BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022698
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174
T T +DIG G G L A+A Q S + LD K L+ + + +
Sbjct: 43 TAGTCIDIGSGPGALSIALAKQ-----SDFSIRALDFSKHXNEIALKNIADANLNDRIQI 97
Query: 175 REGDVRSLPFGDNYFDVVVS--AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+GDV ++P DNY D++VS + FF E A R E+ R+LK GG
Sbjct: 98 VQGDVHNIPIEDNYADLIVSRGSVFFW-----------EDVATAFR---EIYRILKSGG 142
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-- 177
LDIGCG G ++ + G V G+D A+ G+ + +
Sbjct: 35 LDIGCGSG----KISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFK 88
Query: 178 --DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ SL F D+ FD V AF +V ER R++ E+ RVLKPG
Sbjct: 89 VENASSLSFHDSSFDFAVMQAFL---------TSVPDPKERSRIIKEVFRVLKPGA 135
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 17/120 (14%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+GCG G +AT RV G+ + A G+ VT D
Sbjct: 66 LDVGCGIGKPAVRLATARDV-----RVTGISISRPQVNQANARATAAGLANRVTFSYADA 120
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239
LPF D FD V + H +R R L E RVL+PGG + D +
Sbjct: 121 XDLPFEDASFDAVWALESLHHX------------PDRGRALREXARVLRPGGTVAIADFV 168
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 21/153 (13%)
Query: 79 LSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFK 138
L+ +C FF+ P ++ + + +++ + DIGCG G +A
Sbjct: 13 LNLICDFFSNXERQGPGSP---EVTLKALSFIDNLTEKSLIADIGCGTGGQTXVLAGHVT 69
Query: 139 KTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFF 198
G+V GLD R A+ G+Q VT G LPF + D++ S
Sbjct: 70 -----GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSXDDLPFRNEELDLIWSEGAI 124
Query: 199 HTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ +G E G L E + LK GG
Sbjct: 125 YNIGFERG-------------LNEWRKYLKKGG 144
>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8 Complexed With
S-adenosylmethionine
pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
Ttha0223 From Thermus Thermophilus Hb8
Length = 263
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 26/134 (19%)
Query: 120 LDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
L++G G G I L +A + R + LD L R K+ GV V + D
Sbjct: 44 LELGVGTGRIALPLIARGY-------RYIALDADA-AXLEVFRQ-KIAGVDRKVQVVQAD 94
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV-WD 237
R++P D V+ +H V + +VL E +RVLKPGG + WD
Sbjct: 95 ARAIPLPDESVHGVIVVHLWHLV------------PDWPKVLAEAIRVLKPGGALLEGWD 142
Query: 238 LLHV-PEYVRRLQE 250
PE+ LQE
Sbjct: 143 QAEASPEWT--LQE 154
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 25/123 (20%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME---GVQEYVTAR 175
LD+G G G + +F V +DC + R + G+ + +T +
Sbjct: 86 GLDLGAGYGGAARFLVRKFG--------VSIDCLNIAPVQNKRNEEYNNQAGLADNITVK 137
Query: 176 EGDVRSLPFGDNYFDVVVSA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
G +P DN +D + S AF H+ ++++V E RVLKP GV
Sbjct: 138 YGSFLEIPCEDNSYDFIWSQDAFLHS-------------PDKLKVFQECARVLKPRGVXA 184
Query: 235 VWD 237
+ D
Sbjct: 185 ITD 187
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 21/133 (15%)
Query: 105 RMVGSVNDWSTVKTALDIGCGRGI--LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162
R + N+ + KT LD G G + L V +K G + L KK S
Sbjct: 13 RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGI--EISDLQLKKAENFSRENN 70
Query: 163 AKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGE 222
K+ +GD+R LPF D S +F ++ G + R + + E
Sbjct: 71 FKL-------NISKGDIRKLPFKDE------SXSFVYSYGTIFHXRKNDVKE----AIDE 113
Query: 223 MVRVLKPGGVGVV 235
+ RVLKPGG+ +
Sbjct: 114 IKRVLKPGGLACI 126
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 21/153 (13%)
Query: 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKT-GSLGR 145
A + F + + D+A DWS V+ LD+G G G +L A+A + G+L
Sbjct: 154 ALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVE 213
Query: 146 VVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD-VRSLPFGDNYFDVVVSAAFFHTVGKE 204
+ G + R R G+ + VT EGD + LP DVV+ + E
Sbjct: 214 LAGPAERAR------RRFADAGLADRVTVAEGDFFKPLPV---TADVVLLSFVLLNWSDE 264
Query: 205 YGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237
+ + +L VR L+PGG +V D
Sbjct: 265 ----------DALTILRGCVRALEPGGRLLVLD 287
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 22/116 (18%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+GCG G + +TG + VG+D + ++ K G ++ +GD+
Sbjct: 58 LDVGCGDGY----GTYKLSRTGY--KAVGVDISE----VXIQKGKERGEGPDLSFIKGDL 107
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
SLPF + F+ + + ++E E +R L E+ RVLK G +
Sbjct: 108 SSLPFENEQFEAIXAI------------NSLEWTEEPLRALNEIKRVLKSDGYACI 151
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 25/115 (21%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LDIG G G T + + +G+D K A+ +GV E V ++G
Sbjct: 26 LDIGAGAG------HTALAFSPYVQECIGVDATKEXVEVASSFAQEKGV-ENVRFQQGTA 78
Query: 180 RSLPFGDNYFDVVV---SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
SLPF D+ FD++ +A F V K + E+ RVLK G
Sbjct: 79 ESLPFPDDSFDIITCRYAAHHFSDVRK---------------AVREVARVLKQDG 118
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175
V+ LD+ CG GI +A + + VVGLD + R AK ++ +
Sbjct: 42 VRRVLDLACGTGIPTLELAERGYE------VVGLDLHEEMLRVARRKAKERNLK--IEFL 93
Query: 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVL-GEMVRVLKPGGV 232
+GDV + F N FD V FF T+ + E +R L ++ LKPGGV
Sbjct: 94 QGDVLEIAFK-NEFDAV--TMFFSTI--------MYFDEEDLRKLFSKVAEALKPGGV 140
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 40/168 (23%)
Query: 85 FFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLG 144
F AG++ PL + ++ ++D +T LDIGCG G +A A + +
Sbjct: 61 FLDAGHY----QPLRDAIVAQLRERLDDKATA--VLDIGCGEGYYTHAFADALPEITTF- 113
Query: 145 RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKE 204
GLD K ++ A Q VT LPF D D ++ +
Sbjct: 114 ---GLDVSK----VAIKAAAKRYPQ--VTFCVASSHRLPFSDTSXDAII---------RI 155
Query: 205 YGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELK 252
Y E E+ RV+KPGG W + P R L ELK
Sbjct: 156 YAPCKAE----------ELARVVKPGG----WVITATPG-PRHLXELK 188
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 45/144 (31%)
Query: 120 LDIGCGRG---ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
LD+ CG G LL + VVG+D + +R A+ EY +RE
Sbjct: 43 LDLACGVGGFSFLLEDYGFE---------VVGVDISE----DXIRKAR-----EYAKSRE 84
Query: 177 -------GDVRSLPFGDNYFDVVV---SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRV 226
GD R L F D FD V+ S F + E +V E+ RV
Sbjct: 85 SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPL-------------ELNQVFKEVRRV 131
Query: 227 LKPGGVGVVWDLLHVPEYVRRLQE 250
LKP G + + + E + RL+E
Sbjct: 132 LKPSGKFIXY-FTDLRELLPRLKE 154
>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme
pdb|2VDV|F Chain F, Structure Of Trm8, M7g Methylation Enzyme
Length = 246
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLD----CKKRTTLSTLRTAKMEGVQEYVT 173
T DIGCG G L+ ++ F + LG + + + R TA G Q
Sbjct: 52 TIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINV 111
Query: 174 AREGDVRSLPFGDNYFDV-VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
R ++ LP N+F+ +S FF + R +A +L E VLK GGV
Sbjct: 112 LRGNAMKFLP---NFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGV 168
>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|F Chain F, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 254
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 8/120 (6%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLD----CKKRTTLSTLRTAKMEGVQEYVT 173
T DIGCG G L+ ++ F + LG + + + R TA G Q
Sbjct: 60 TIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINV 119
Query: 174 AREGDVRSLPFGDNYFDV-VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
R ++ LP N+F+ +S FF + R +A +L E VLK GGV
Sbjct: 120 LRGNAMKFLP---NFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGV 176
>pdb|3PX2|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX2|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123n Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 262
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+ CG G+ L +A F G V GL+ L+ R + V + GD+
Sbjct: 55 LDVACGTGMHLRHLADSF------GTVEGLELSA-DMLAIARRRNPDAVLHH-----GDM 102
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM--RVLGEMVRVLKP 229
R G + V F ++G G ++AA ER VL + V V++P
Sbjct: 103 RDFSLGRRFSAVTC---MFSSIGNLAGQAELDAALERFAAHVLPDGVVVVEP 151
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTT 156
P + ++ V +N+ + DIGCG G +A K G++ G+D
Sbjct: 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-----GQITGIDLFPDFI 82
Query: 157 LSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216
A + V G + +LPF + D++ S + +G E G
Sbjct: 83 EIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERG---------- 132
Query: 217 MRVLGEMVRVLKPGG 231
+ E + LK GG
Sbjct: 133 ---MNEWSKYLKKGG 144
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTT 156
P + ++ V +N+ + DIGCG G +A K G++ G+D
Sbjct: 34 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-----GQITGIDLFPDFI 88
Query: 157 LSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216
A + V G + +LPF + D++ S + +G E G
Sbjct: 89 EIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERG---------- 138
Query: 217 MRVLGEMVRVLKPGG 231
+ E + LK GG
Sbjct: 139 ---MNEWSKYLKKGG 150
>pdb|3PFG|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sam And
Dtdp-Phenol
pdb|3PFH|A Chain A, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
pdb|3PFH|D Chain D, X-Ray Crystal Structure The N,N-Dimethyltransferase Tylm1
From Streptomyces Fradiae In Complex With Sah And
Dtdp-Quip3n
Length = 263
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+ CG G+ L +A F G V GL+ L+ R + V + GD+
Sbjct: 55 LDVACGTGMHLRHLADSF------GTVEGLELSA-DMLAIARRRNPDAVLHH-----GDM 102
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM--RVLGEMVRVLKP 229
R G + V F ++G G ++AA ER VL + V V++P
Sbjct: 103 RDFSLGRRFSAVTC---MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151
>pdb|3PX3|A Chain A, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
pdb|3PX3|D Chain D, Structure Of Tylm1 From Streptomyces Fradiae H123a Mutant
In Complex With Sah And Dtdp-Quip3n
Length = 263
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+ CG G+ L +A F G V GL+ L+ R + V + GD+
Sbjct: 55 LDVACGTGMHLRHLADSF------GTVEGLELSA-DMLAIARRRNPDAVLHH-----GDM 102
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM--RVLGEMVRVLKP 229
R G + V F ++G G ++AA ER VL + V V++P
Sbjct: 103 RDFSLGRRFSAVTC---MFSSIGALAGQAELDAALERFAAHVLPDGVVVVEP 151
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K LD+GCG GIL + F +V+G+D + + ++ +++ +T +
Sbjct: 66 KVVLDVGCGTGIL-----SMFAAKAGAKKVLGVD-QSEILYQAMDIIRLNKLEDTITLIK 119
Query: 177 GDVRSLPFGDNYFDVVVS 194
G + + DV++S
Sbjct: 120 GKIEEVHLPVEKVDVIIS 137
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 19/110 (17%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+GCG G++ A+A + K T D +R K+ + Y D+
Sbjct: 57 LDLGCGYGVIGIALADEVKST------TXADINRRAIKLAKENIKLNNLDNY------DI 104
Query: 180 RSL------PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEM 223
R + D ++ +++ GKE HR +E E ++ GE+
Sbjct: 105 RVVHSDLYENVKDRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEI 153
>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein
1
Length = 235
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 121 DIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK--RTTLSTLRTAKMEGVQEYVTAREGD 178
DIGCG G LL ++ F T LG + + + + LR A G Q R
Sbjct: 52 DIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNA 111
Query: 179 VRSLPFGDNYF 189
++ LP N+F
Sbjct: 112 MKHLP---NFF 119
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K LD+G G GIL F +V+G++C + + ++ K + VT +
Sbjct: 72 KVVLDVGSGTGIL-----CMFAAKAGARKVIGIECSSISDYA-VKIVKANKLDHVVTIIK 125
Query: 177 GDVRSLPFGDNYFDVVVS 194
G V + D+++S
Sbjct: 126 GKVEEVELPVEKVDIIIS 143
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K LD+G G GIL F +V+G++C + + ++ K + VT +
Sbjct: 68 KVVLDVGSGTGIL-----CMFAAKAGARKVIGIECSSISDYA-VKIVKANKLDHVVTIIK 121
Query: 177 GDVRSLPFGDNYFDVVVS 194
G V + D+++S
Sbjct: 122 GKVEEVELPVEKVDIIIS 139
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K LD+G G GIL F +V+G++C + + ++ K + VT +
Sbjct: 62 KVVLDVGSGTGIL-----CMFAAKAGARKVIGIECSSISDYA-VKIVKANKLDHVVTIIK 115
Query: 177 GDVRSLPFGDNYFDVVVS 194
G V + D+++S
Sbjct: 116 GKVEEVELPVEKVDIIIS 133
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K LD+G G GIL F +V+G++C + + ++ K + VT +
Sbjct: 59 KVVLDVGSGTGIL-----CMFAAKAGARKVIGIECSSISDYA-VKIVKANKLDHVVTIIK 112
Query: 177 GDVRSLPFGDNYFDVVVS 194
G V + D+++S
Sbjct: 113 GKVEEVELPVEKVDIIIS 130
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K LD+GCG GIL + F +V+ +D + + ++ +++ + +
Sbjct: 47 KVVLDVGCGTGIL-----SMFAAKAGAKKVIAVD-QSEILYQAMDIIRLNKLEDTIVLIK 100
Query: 177 GDVRSLPFGDNYFDVVVS 194
G + + DV++S
Sbjct: 101 GKIEEVSLPVEKVDVIIS 118
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 19/113 (16%)
Query: 93 YSAVPLHYDMAQRMVGSVN---------DWSTVKTALDIGCGRGILLNAVATQFKKTGSL 143
Y +H +M Q V +++ D K LD+GCG GIL + F
Sbjct: 7 YDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGIL-----SMFAAKHGA 61
Query: 144 GRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS--LPFGDNYFDVVVS 194
V+G+D ++ ++ G + +T G + LPF D+++S
Sbjct: 62 KHVIGVDMSSIIEMAK-ELVELNGFSDKITLLRGKLEDVHLPFPK--VDIIIS 111
>pdb|2X8X|X Chain X, Structure Of The N-Terminal Domain Of Omp85 From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus
Length = 235
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 143 LGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202
LG+VVG + TL+ A EGV E VT R + P D V+S G
Sbjct: 130 LGQVVGTPQVDPDGVVTLQVA--EGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPG 187
Query: 203 KEYGHRTVEAAAERMRVLG--EMVRV-LKPG 230
+TV+A R+ LG E V+V L+PG
Sbjct: 188 VVLNQKTVQADLRRLFELGLFEDVQVALEPG 218
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLD 150
L+IGCG+G L +A Q GS G V G+D
Sbjct: 48 LEIGCGQGDLSAVLADQV---GSSGHVTGID 75
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFK 138
V + D+S TA+DIG GRG L AV F
Sbjct: 193 QVAAAYDFSGAATAVDIGGGRGSLXAAVLDAFP 225
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
KT LD+GCG G A K +V+G+D +R L AK + V +
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAK-----KVLGIDLSER----MLTEAKRKTTSPVVCYEQ 96
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVG 202
+ + + ++VV+S+ H +
Sbjct: 97 KAIEDIAIEPDAYNVVLSSLALHYIA 122
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 93 YSAVPLHYDM-AQRM------VGSVNDWSTV--KTALDIGCGRGIL 129
YS V +H +M A R+ +G + +W+ + KT LD+G G GIL
Sbjct: 52 YSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGIL 97
>pdb|3BXO|A Chain A, Crystal Structure Of Streptomyces Venezuelae Desvi
pdb|3BXO|B Chain B, Crystal Structure Of Streptomyces Venezuelae Desvi
Length = 239
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 42/116 (36%), Gaps = 21/116 (18%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+ CG G L +F T L + R L T +GD+
Sbjct: 45 LDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPD------------ATLHQGDM 92
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235
R G + VV + F +VG Y T E A + L+PGGV VV
Sbjct: 93 RDFRLGRKFSAVV---SMFSSVG--YLKTTEELGA----AVASFAEHLEPGGVVVV 139
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 21/139 (15%)
Query: 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKK-TGSLGRVVGLDCKKRTTLST 159
D+A DWS V+ LD+G G G L A+A + G+L + G + R
Sbjct: 168 DLAYEAPADAYDWSAVRHVLDVGGGNGGXLAAIALRAPHLRGTLVELAGPAERAR----- 222
Query: 160 LRTAKMEGVQEYVTAREGD-VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMR 218
R G+ + VT EGD + LP DVV+ + E + +
Sbjct: 223 -RRFADAGLADRVTVAEGDFFKPLPV---TADVVLLSFVLLNWSDE----------DALT 268
Query: 219 VLGEMVRVLKPGGVGVVWD 237
+L VR L+PGG +V D
Sbjct: 269 ILRGCVRALEPGGRLLVLD 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,203,770
Number of Sequences: 62578
Number of extensions: 306443
Number of successful extensions: 1004
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 992
Number of HSP's gapped (non-prelim): 43
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)