BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022698
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q74LY0|UBIE_LACJO Demethylmenaquinone methyltransferase OS=Lactobacillus johnsonii
(strain CNCM I-12250 / La1 / NCC 533) GN=ubiE PE=3 SV=1
Length = 244
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 28/157 (17%)
Query: 92 FYSAVPLHYDMAQRMV--GSVNDWSTVKT----------ALDIGCGRGILLNAVATQFKK 139
++ V HYD ++ G+ N W ALD+ CG G L A+A K+
Sbjct: 19 LFTRVAPHYDQMNNLISLGTQNGWRKKFFKKLKVKAGDFALDLCCGTGDLTIALA---KQ 75
Query: 140 TGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFH 199
G G V+GLD ++ + + + +Q+ + ++GD LP+ D FD+V
Sbjct: 76 VGPSGNVIGLDFNQKMLDLADKKIRGQNLQKEIQLKQGDAMHLPYTDQSFDIV------- 128
Query: 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG-VGVV 235
T+G +G R V A + VL E+ RVLKP G VG++
Sbjct: 129 TIG--FGLRNVPDADQ---VLKEIYRVLKPDGKVGIL 160
>sp|B2IUM7|UBIE_NOSP7 Demethylmenaquinone methyltransferase OS=Nostoc punctiforme (strain
ATCC 29133 / PCC 73102) GN=ubiE PE=3 SV=1
Length = 230
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 73/151 (48%), Gaps = 29/151 (19%)
Query: 113 WSTVK---TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
WS K TALD+ CG G L +A ++ G+ G V G+D + + L TAK +
Sbjct: 38 WSAAKSGNTALDLCCGSGDLALRLA---RRVGATGYVYGVDF----SCNLLETAKERSQK 90
Query: 170 EY----VTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR 225
+Y + E DV +LPF DN FD T+G YG R V+ + R L E+ R
Sbjct: 91 QYPQPAIAWVEADVLNLPFDDNQFDAA-------TMG--YGLRNVK---DIPRSLQELHR 138
Query: 226 VLKPGGVGVVWDLLHVPE--YVRRLQELKME 254
VLKPG + D H P +R Q+L +
Sbjct: 139 VLKPGAKAAILD-FHRPSNPQLRAFQQLYLN 168
>sp|Q3ED65|MENG_ARATH 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic
OS=Arabidopsis thaliana GN=MENG PE=1 SV=2
Length = 261
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 20/123 (16%)
Query: 113 WSTVKTA---LDIGCGRGILLNAVATQFKKTGSLGRVVGLD--CKKRTTLSTLRTAKMEG 167
WS K LD+ CG G L ++ +K GS G+V+GLD ++ +T ++ K
Sbjct: 68 WSGAKKGDYVLDLCCGSGDLAFLLS---EKVGSTGKVMGLDFSSEQLAVAATRQSLKARS 124
Query: 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVL 227
+ + EGD LPF D FD V T+G YG R V +R+R + EM RVL
Sbjct: 125 CYKCIEWIEGDAIDLPFDDCEFDAV-------TMG--YGLRNV---VDRLRAMKEMYRVL 172
Query: 228 KPG 230
KPG
Sbjct: 173 KPG 175
>sp|C5BMZ8|BIOHC_TERTT Biotin biosynthesis bifunctional protein BioHC OS=Teredinibacter
turnerae (strain ATCC 39867 / T7901) GN=bioC PE=3 SV=1
Length = 570
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 23/150 (15%)
Query: 93 YSAVPLHYD----MAQRMVGSVNDWS------TVKTALDIGCGRGILLNAVATQFKK-TG 141
+S+ YD + +R+V S+ ++S +T LD+GCG G + + QF + T
Sbjct: 303 FSSAAQEYDTLARLQKRVVDSLVEFSLGTGGSVGQTLLDLGCGTGYCIERLLQQFPEITQ 362
Query: 142 SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTV 201
GR+ LD + + GV E + GD+ SLPF D FD +S+
Sbjct: 363 PEGRIHALDIAEGMLDRAQQKFDELGVAEQINWHLGDMESLPFVDESFDGCISSL----- 417
Query: 202 GKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
TV+ + +++ EM R LKPGG
Sbjct: 418 -------TVQWSENPLQLFSEMYRALKPGG 440
>sp|Q3MD91|UBIE_ANAVT Demethylmenaquinone methyltransferase OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=ubiE PE=3 SV=1
Length = 229
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
Query: 113 WSTVK---TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
W+ K T LD+ CG G L +A ++ GS G+V G+D + + A+ + Q
Sbjct: 38 WTGAKPGDTCLDLCCGSGDLALRLA---RRVGSTGQVYGVDFSANLLETAKQRAQAQYPQ 94
Query: 170 EYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP 229
+++ E +V LPF DN FD T+G YG R V + R L E+ RVLKP
Sbjct: 95 PHISWVEANVLDLPFEDNQFDAA-------TMG--YGLRNV---TDIPRSLQELRRVLKP 142
Query: 230 GGVGVVWDLLHVP--EYVRRLQELKMEDIRVS 259
+ D H P + R Q+ ++ I V
Sbjct: 143 NAKAAILD-FHRPNNQQFRTFQQWYLDSIVVP 173
>sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1
Length = 241
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPFGDN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFGDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|Q8CSH9|UBIE_STAES Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=ubiE PE=3 SV=1
Length = 241
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG A++ + GS G+V GLD + + +TA +E +Q G
Sbjct: 53 ALDVCCGTADWTIALS---EAVGSKGQVTGLDFSENMLEVGKQKTASLENIQ----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
D +LPF DN FD V T+G +G R V + + L EM RVLKPGG+ V
Sbjct: 106 DAMNLPFDDNSFDYV-------TIG--FGLRNV---PDYLSALKEMHRVLKPGGMVV 150
>sp|Q5HP74|UBIE_STAEQ Demethylmenaquinone methyltransferase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=ubiE PE=3 SV=1
Length = 241
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 20/117 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG A++ + GS G+V GLD + + +TA +E +Q G
Sbjct: 53 ALDVCCGTADWTIALS---EAVGSKGQVTGLDFSENMLEVGKQKTASLENIQ----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
D +LPF DN FD V T+G +G R V + + L EM RVLKPGG+ V
Sbjct: 106 DAMNLPFDDNSFDYV-------TIG--FGLRNV---PDYLSALKEMHRVLKPGGMVV 150
>sp|Q73AY2|UBIE_BACC1 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
ATCC 10987) GN=ubiE PE=3 SV=1
Length = 237
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A + G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALA---EAVGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|Q6GGU0|UBIE_STAAR Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MRSA252) GN=ubiE PE=3 SV=1
Length = 241
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 57/115 (49%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K GS G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGSTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|Q8YLP4|UBIE_NOSS1 Demethylmenaquinone methyltransferase OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ubiE PE=3 SV=1
Length = 229
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 113 WSTVK---TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
W+ K T LD+ CG G L +A ++ GS G+V G+D + + A+ + Q
Sbjct: 38 WTGAKPGDTCLDLCCGSGDLALRLA---RRVGSTGQVSGVDFSANLLETAKQRAQSQYPQ 94
Query: 170 EYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP 229
++ E +V LPF DN FD T+G YG R V + R L E+ RVLKP
Sbjct: 95 PNISWVEANVLDLPFKDNQFDAA-------TMG--YGLRNV---TDIPRSLQELHRVLKP 142
Query: 230 GGVGVVWDLLHVP--EYVRRLQELKMEDIRV 258
+ D H P + R Q+ ++ I V
Sbjct: 143 NAKAAILD-FHRPNNQQFRTFQQWYLDSIVV 172
>sp|Q81FQ6|UBIE_BACCR Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
ATCC 14579 / DSM 31) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 110 VNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
+ D ALD+ CG A+A G G+VVGLD + + ++ K+E +Q
Sbjct: 42 IMDVQPGSQALDVCCGTADWTIALAG---AVGEQGKVVGLDFSE--NMLSVGKQKVEALQ 96
Query: 170 -EYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK 228
+ V G+ LPF DN FD V T+G +G R V + M VL EM RV+K
Sbjct: 97 LKQVELLHGNAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVK 144
Query: 229 PGG 231
PGG
Sbjct: 145 PGG 147
>sp|B7HHR7|UBIE_BACC4 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
B4264) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 110 VNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
+ D ALD+ CG A+A G G+VVGLD + + ++ K+E +Q
Sbjct: 42 IMDVQPGSQALDVCCGTADWTIALAG---AVGEQGKVVGLDFSE--NMLSVGKQKVEALQ 96
Query: 170 -EYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK 228
+ V G+ LPF DN FD V T+G +G R V + M VL EM RV+K
Sbjct: 97 LKQVELLHGNAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVK 144
Query: 229 PGG 231
PGG
Sbjct: 145 PGG 147
>sp|B7IP91|UBIE_BACC2 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
G9842) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 110 VNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
+ D ALD+ CG A+A G G+VVGLD + + ++ K+E +Q
Sbjct: 42 IMDVQPGSQALDVCCGTADWTIALAG---AVGEQGKVVGLDFSE--NMLSVGKQKVEALQ 96
Query: 170 -EYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK 228
+ V G+ LPF DN FD V T+G +G R V + M VL EM RV+K
Sbjct: 97 LKQVELLHGNAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVK 144
Query: 229 PGG 231
PGG
Sbjct: 145 PGG 147
>sp|Q6HL42|UBIE_BACHK Demethylmenaquinone methyltransferase OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|Q63DL9|UBIE_BACCZ Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain ZK
/ E33L) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|B9IVN5|UBIE_BACCQ Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
Q1) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|B7HL23|UBIE_BACC7 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
AH187) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|C1EN10|UBIE_BACC3 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
03BB102) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|B7JGZ8|UBIE_BACC0 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain
AH820) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|Q81SW0|UBIE_BACAN Demethylmenaquinone methyltransferase OS=Bacillus anthracis GN=ubiE
PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|C3L8S6|UBIE_BACAC Demethylmenaquinone methyltransferase OS=Bacillus anthracis (strain
CDC 684 / NRRL 3495) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|C3P5A0|UBIE_BACAA Demethylmenaquinone methyltransferase OS=Bacillus anthracis (strain
A0248) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 18/114 (15%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREG 177
ALD+ CG A+A G G+VVGLD + + ++ K+E +Q + V G
Sbjct: 51 ALDVCCGTADWTIALAGA---VGEQGKVVGLDFSE--NMLSVGKQKVEALQLKQVELLHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 106 NAMELPFEDNTFDYV-------TIG--FGLRNV---PDYMHVLKEMTRVVKPGG 147
>sp|B7GHP8|UBIE_ANOFW Demethylmenaquinone methyltransferase OS=Anoxybacillus flavithermus
(strain DSM 21510 / WK1) GN=ubiE PE=3 SV=1
Length = 237
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
ALD+ CG A+A + G G V GLD + K G Q +VT G+
Sbjct: 51 ALDVCCGTADWTIALA---EAVGPSGEVYGLDFSRNMLKVGEEKVKERGFQ-HVTLVHGN 106
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
SLPF DN FD V T+G +G R V + M VL EM RV KPGG
Sbjct: 107 AMSLPFPDNTFDYV-------TIG--FGLRNV---PDYMTVLKEMYRVAKPGG 147
>sp|Q8CWG0|UBIE_OCEIH Demethylmenaquinone methyltransferase OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=ubiE PE=3 SV=1
Length = 238
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
+TALD+ CG G +++ + G G+V+GLD K LS + K + +
Sbjct: 51 ETALDVCCGTGDWSISLS---EAVGQTGKVIGLDFSK-NMLSIAKQKKQDLQLNQLELVH 106
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
G+ LP+ +N FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 107 GNAMELPYEENSFDYV-------TIG--FGLRNV---PDYMTVLEEMYRVVKPGG 149
>sp|Q65I24|UBIE_BACLD Demethylmenaquinone methyltransferase OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=ubiE PE=3 SV=1
Length = 232
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
TALD+ CG G A+A G G + GLD K + ++ K E + + G
Sbjct: 50 TALDVCCGTGDWTIALAD---AAGETGEIKGLDFSK--NMLSIAEQKTESYSQ-IELIHG 103
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ LPF DN FD V T+G +G R V + + VL EM RV+KPGG
Sbjct: 104 NAMELPFPDNTFDYV-------TIG--FGLRNV---PDYLTVLKEMARVVKPGG 145
>sp|B9DNV5|UBIE_STACT Demethylmenaquinone methyltransferase OS=Staphylococcus carnosus
(strain TM300) GN=ubiE PE=3 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 20/117 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG A++ K G G V+GLD + + +T M +Q +G
Sbjct: 53 ALDVCCGTADWTIALS---KAVGPSGEVIGLDFSENMLKVGEEKTKNMSNIQ----LVQG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
D LPF DN FD V T+G +G R + + + L EM RVLKPGG+ V
Sbjct: 106 DAMDLPFDDNEFDYV-------TIG--FGLRNI---PDYVIALKEMNRVLKPGGMAV 150
>sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MW2) GN=ubiE PE=3 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=ubiE PE=3 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|Q6G992|UBIE_STAAS Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain MSSA476) GN=ubiE PE=3 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|P67062|UBIE_STAAN Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain N315) GN=ubiE PE=1 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|P67061|UBIE_STAAM Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=ubiE PE=1 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|A6QH20|UBIE_STAAE Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain Newman) GN=ubiE PE=3 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|Q5HFV2|UBIE_STAAC Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain COL) GN=ubiE PE=3 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|A5ISZ9|UBIE_STAA9 Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain JH9) GN=ubiE PE=3 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|A6U1T9|UBIE_STAA2 Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain JH1) GN=ubiE PE=3 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|A7X2H6|UBIE_STAA1 Demethylmenaquinone methyltransferase OS=Staphylococcus aureus
(strain Mu3 / ATCC 700698) GN=ubiE PE=3 SV=1
Length = 241
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREG 177
ALD+ CG G A++ K G G V G+D + + +TA ME V+ G
Sbjct: 53 ALDVCCGTGDWTIALS---KAVGPTGEVTGIDFSENMLEVGKEKTASMENVK----LVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
D LPF DN FD V T+G +G R V + + L EM RVLKPGG+
Sbjct: 106 DAMELPFEDNSFDYV-------TIG--FGLRNV---PDYLVALKEMNRVLKPGGM 148
>sp|O86169|UBIE_GEOSE Demethylmenaquinone methyltransferase OS=Geobacillus
stearothermophilus GN=ubiE PE=3 SV=1
Length = 234
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K ALD+ CG A+A + G G+V GLD + + K G+ V
Sbjct: 49 KKALDVCCGTADWTIALA---EAVGPEGKVYGLDFSENMLKVGEQKVKARGLHN-VKLIH 104
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
G+ LPF DN FD V T+G +G R V + M VL EM RV KPGG+ V
Sbjct: 105 GNAMQLPFPDNSFDYV-------TIG--FGLRNV---PDYMTVLKEMHRVTKPGGITV 150
>sp|Q88SI6|UBIE_LACPL Demethylmenaquinone methyltransferase OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=ubiE PE=3
SV=1
Length = 237
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179
LD+ CG G A+A K+ + G V+GLD + + V + V R G+
Sbjct: 52 LDLCCGTGDWTIALA---KELQAPGEVIGLDFSAPMLKLAQQKVTQQQVADRVWLRRGNA 108
Query: 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
LPF DN FD+V T+G +G R + ++ + L E+ RVLKPG
Sbjct: 109 MHLPFKDNTFDLV-------TIG--FGLRNL---PDKAQALTEIYRVLKPGA 148
>sp|Q5N4X9|UBIE_SYNP6 Demethylmenaquinone methyltransferase OS=Synechococcus sp. (strain
ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ubiE PE=3 SV=1
Length = 233
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 113 WSTVKTA---LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
WS K LD+ CG G L +A K GS G+V+G D + A+
Sbjct: 42 WSAAKPGDRVLDLCCGSGDLAFLLA---KVVGSKGQVIGFDRSQALLSVAGDRARQLASA 98
Query: 170 EYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP 229
+ + GD LPF D++FD T+G YG R V + VL ++ RVLKP
Sbjct: 99 LVIDWQRGDALDLPFPDDHFDAA-------TLG--YGLRNVP---DIPTVLRQLQRVLKP 146
Query: 230 GGVGVVWDLLHVP--EYVRRLQELKME 254
G + D +H P +R+ Q++ ++
Sbjct: 147 GARAAILD-MHRPYSPLLRQFQQVYLD 172
>sp|Q31P90|UBIE_SYNE7 Demethylmenaquinone methyltransferase OS=Synechococcus elongatus
(strain PCC 7942) GN=ubiE PE=3 SV=1
Length = 233
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 113 WSTVKTA---LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169
WS K LD+ CG G L +A K GS G+V+G D + A+
Sbjct: 42 WSAAKPGDRVLDLCCGSGDLAFLLA---KVVGSKGQVIGFDRSQALLSVAGDRARQLASA 98
Query: 170 EYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP 229
+ + GD LPF D++FD T+G YG R V + VL ++ RVLKP
Sbjct: 99 LVIDWQRGDALDLPFPDDHFDAA-------TLG--YGLRNVP---DIPTVLRQLQRVLKP 146
Query: 230 GGVGVVWDLLHVP--EYVRRLQELKME 254
G + D +H P +R+ Q++ ++
Sbjct: 147 GARAAILD-MHRPYSPLLRQFQQVYLD 172
>sp|Q5WGT4|UBIE_BACSK Demethylmenaquinone methyltransferase OS=Bacillus clausii (strain
KSM-K16) GN=ubiE PE=3 SV=1
Length = 235
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177
+ALD+ CG G A++ + G G V+GLD + L+ R + ++ G
Sbjct: 50 SALDVCCGTGDWTLALS---EAVGEQGSVIGLDFSE-NMLAVGREKVAAAKRTNISLVHG 105
Query: 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
+ +LP+ DN FD V T+G +G R V + M+VL EM RV KPGG
Sbjct: 106 NAMALPYDDNTFDYV-------TIG--FGLRNV---PDYMQVLQEMCRVAKPGG 147
>sp|Q9KJ20|GSDMT_ACTHA Glycine/sarcosine/dimethylglycine N-methyltransferase
OS=Actinopolyspora halophila PE=1 SV=1
Length = 565
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 48/182 (26%)
Query: 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA 163
QRM G V D S LD+G G G +A + V L+ +
Sbjct: 344 QRMAGKV-DISPETRILDLGAGYGGAARYLARTYG-----CHVTCLNLSEVENQRNREIT 397
Query: 164 KMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA-AFFHTVGKEYGHRTVEAAAERMRVLGE 222
+ EG++ + +G LP+ DN FDVV S +F H+ +R RV+ E
Sbjct: 398 RAEGLEHLIEVTDGSFEDLPYQDNAFDVVWSQDSFLHS-------------GDRSRVMEE 444
Query: 223 MVRVLKPGG-----------------VGVVWDLLHV-----PEYVRR------LQELKME 254
+ RVLKP G +G + D LH+ P + R+ LQ ++ E
Sbjct: 445 VTRVLKPKGSVLFTDPMASDSAKKNELGPILDRLHLDSLGSPGFYRKELTRLGLQNIEFE 504
Query: 255 DI 256
D+
Sbjct: 505 DL 506
>sp|P20187|YT37_STRFR Uncharacterized 37.1 kDa protein in transposon TN4556
OS=Streptomyces fradiae PE=3 SV=1
Length = 345
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 36/171 (21%)
Query: 88 AGNFFYSAVP--------LHYDMAQRMVGSVN----DWSTVKTALDIGCGRGILLNAVAT 135
+G F SAVP L A R SV D ++ALD+GCG G L +A
Sbjct: 87 SGRVFESAVPDEVSYLDQLATTDAARSYKSVMLDALDARPGESALDLGCGPGTDLGTLA- 145
Query: 136 QFKKTGSLGRVVGLDCKKR-TTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194
K GRV+G+D + + RT + V+ + GD+ +LP D D +
Sbjct: 146 --KAVSPSGRVIGIDSSQEMVEQARRRTENLPAVEVEL----GDIHTLPLEDGSIDCART 199
Query: 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV----WDLLHV 241
R ++ A+ + L E RVL+PGG V+ WD L +
Sbjct: 200 ------------DRVLQHVADPAQALAEARRVLRPGGRLVMGEPDWDSLTI 238
>sp|A8FEK9|UBIE_BACP2 Demethylmenaquinone methyltransferase OS=Bacillus pumilus (strain
SAFR-032) GN=ubiE PE=3 SV=1
Length = 234
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
ALD+ CG A+A G G V GLD K LS T G + G+
Sbjct: 51 ALDVCCGTADWTIALADA---VGDKGEVKGLDFSK-NMLSVGETKVKSGGYNQIELLHGN 106
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232
LPF DN FD V T+G +G R V + + VL EM RV+KPGG+
Sbjct: 107 AMELPFEDNTFDYV-------TIG--FGLRNV---PDYLTVLKEMTRVVKPGGM 148
>sp|Q9KCC4|UBIE_BACHD Demethylmenaquinone methyltransferase OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=ubiE PE=3 SV=1
Length = 245
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
++ALD+ CG A+ K G G V GLD + LS + + ++V R
Sbjct: 49 QSALDVCCGTADWAIALG---KAVGPTGHVEGLDFSE-NMLSIGKKKIADERLDHVFLRH 104
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
G+ LP+ D+ FD V T+G +G R V + M+VL EM RV KPGG
Sbjct: 105 GNAMELPYADDTFDFV-------TIG--FGLRNV---PDYMQVLREMARVTKPGG 147
>sp|P94298|UBIE_BACPE Demethylmenaquinone methyltransferase OS=Bacillus pseudofirmus
(strain OF4) GN=ubiE PE=3 SV=2
Length = 236
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
ALD+ CG A+ + G G+V GLD K L K E ++V+ R G+
Sbjct: 51 ALDVCCGTADWTIALG---EAVGHNGKVEGLDFSKNMLLIGEEKVK-EHKMKHVSLRHGN 106
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
LP+ D FDVV T+G +G R V + M+VL EM RV+K GG
Sbjct: 107 AMELPYADETFDVV-------TIG--FGLRNV---PDYMQVLKEMHRVVKKGG 147
>sp|O66128|UBIE_MICLU Demethylmenaquinone methyltransferase OS=Micrococcus luteus GN=ubiE
PE=3 SV=1
Length = 246
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 18/122 (14%)
Query: 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178
ALD+ CG G +A + G G V+GLD + + ++ K +Q + G+
Sbjct: 62 ALDVCCGTGDWTIQMA---QAVGKNGHVIGLDFSE--NMLSVAQGKTNHIQN-IELIHGN 115
Query: 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238
LPF DN FD + T+G +G R + + + L EM RVLKPGG+ VV +
Sbjct: 116 AMELPFEDNIFD-------YTTIG--FGLRNL---PDYKKGLEEMYRVLKPGGMIVVLET 163
Query: 239 LH 240
H
Sbjct: 164 SH 165
>sp|Q5KXU0|UBIE_GEOKA Demethylmenaquinone methyltransferase OS=Geobacillus kaustophilus
(strain HTA426) GN=ubiE PE=3 SV=1
Length = 234
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K ALD+ CG A+A + G G V GLD + + K G+ V
Sbjct: 49 KRALDVCCGTADWAIALA---EAVGPEGEVYGLDFSENMLKVGEQKVKARGLGN-VKLIH 104
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234
G+ LPF DN FD V T+G +G R V + M VL EM RV KPGG+ V
Sbjct: 105 GNAMQLPFPDNSFDYV-------TIG--FGLRNV---PDYMTVLKEMHRVTKPGGMTV 150
>sp|C5D3E5|UBIE_GEOSW Demethylmenaquinone methyltransferase OS=Geobacillus sp. (strain
WCH70) GN=ubiE PE=3 SV=1
Length = 234
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176
K ALD+ CG A+A + G G V GLD K + K + V
Sbjct: 49 KKALDVCCGTADWTIALA---EAVGPSGEVYGLDFSKNMLQVGEQKVKERQLAN-VKLIH 104
Query: 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231
G+ ++PF DN FD V T+G +G R V + M VL EM RV+KPGG
Sbjct: 105 GNAMNIPFPDNTFDYV-------TIG--FGLRNV---PDYMTVLKEMYRVVKPGG 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,405,688
Number of Sequences: 539616
Number of extensions: 3945874
Number of successful extensions: 16100
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 518
Number of HSP's that attempted gapping in prelim test: 15748
Number of HSP's gapped (non-prelim): 536
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)