Query 022698
Match_columns 293
No_of_seqs 280 out of 2967
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00536 hemK_fam HemK family 99.9 1.5E-24 3.4E-29 190.1 23.3 236 26-277 23-283 (284)
2 PRK14966 unknown domain/N5-glu 99.9 7.2E-25 1.6E-29 197.1 19.9 229 29-277 166-419 (423)
3 PRK01544 bifunctional N5-gluta 99.9 4.9E-24 1.1E-28 199.9 23.4 234 26-275 24-305 (506)
4 COG2890 HemK Methylase of poly 99.9 3.9E-23 8.4E-28 179.9 21.7 217 41-277 36-277 (280)
5 TIGR03533 L3_gln_methyl protei 99.9 4.9E-22 1.1E-26 173.9 22.2 225 26-264 29-278 (284)
6 PRK09328 N5-glutamine S-adenos 99.9 8.1E-22 1.8E-26 172.4 23.0 228 30-275 22-274 (275)
7 COG2226 UbiE Methylase involve 99.9 1.2E-21 2.7E-26 164.7 18.3 123 98-238 35-157 (238)
8 PRK11805 N5-glutamine S-adenos 99.9 2.6E-21 5.6E-26 170.8 21.3 222 26-260 41-286 (307)
9 TIGR03534 RF_mod_PrmC protein- 99.9 1.9E-20 4.2E-25 161.5 21.7 209 42-266 14-247 (251)
10 PF01209 Ubie_methyltran: ubiE 99.9 1.2E-21 2.6E-26 166.3 10.3 116 105-237 38-153 (233)
11 PLN02233 ubiquinone biosynthes 99.9 6.4E-20 1.4E-24 158.9 18.9 138 112-264 70-252 (261)
12 TIGR03704 PrmC_rel_meth putati 99.8 1.3E-19 2.8E-24 155.9 19.9 188 59-262 28-243 (251)
13 PLN02244 tocopherol O-methyltr 99.8 2.3E-19 4.9E-24 161.2 18.0 142 101-259 100-277 (340)
14 TIGR02752 MenG_heptapren 2-hep 99.8 1.2E-18 2.5E-23 148.6 19.6 145 104-265 35-223 (231)
15 PLN02336 phosphoethanolamine N 99.8 7.3E-19 1.6E-23 165.2 16.0 156 85-260 235-414 (475)
16 KOG2904 Predicted methyltransf 99.8 3E-18 6.4E-23 143.2 16.8 212 50-276 79-327 (328)
17 PRK11036 putative S-adenosyl-L 99.8 6.2E-18 1.3E-22 146.3 16.9 135 104-258 35-205 (255)
18 PTZ00098 phosphoethanolamine N 99.8 7.2E-18 1.6E-22 146.2 17.3 140 102-260 40-202 (263)
19 PF05175 MTS: Methyltransferas 99.8 2.6E-18 5.7E-23 139.5 13.4 136 115-265 31-166 (170)
20 PLN02396 hexaprenyldihydroxybe 99.8 2.3E-18 5E-23 152.4 14.1 129 115-261 131-290 (322)
21 PF12847 Methyltransf_18: Meth 99.8 2.7E-18 5.9E-23 129.6 12.4 109 115-237 1-111 (112)
22 PRK00107 gidB 16S rRNA methylt 99.8 1.7E-17 3.8E-22 136.0 17.9 141 114-276 44-186 (187)
23 PF13847 Methyltransf_31: Meth 99.8 4E-18 8.6E-23 136.0 13.2 114 115-245 3-118 (152)
24 PLN02490 MPBQ/MSBQ methyltrans 99.8 8.9E-18 1.9E-22 149.2 16.2 141 100-260 98-256 (340)
25 PF08241 Methyltransf_11: Meth 99.8 4.3E-18 9.3E-23 124.1 10.9 95 120-235 1-95 (95)
26 PRK15001 SAM-dependent 23S rib 99.8 3.6E-17 7.7E-22 147.3 17.8 155 103-276 217-373 (378)
27 KOG1540 Ubiquinone biosynthesi 99.8 2.9E-17 6.3E-22 136.2 15.2 145 99-256 85-234 (296)
28 PRK11873 arsM arsenite S-adeno 99.8 2.7E-17 5.9E-22 143.6 15.8 132 113-260 75-230 (272)
29 PRK15451 tRNA cmo(5)U34 methyl 99.8 3.4E-17 7.5E-22 140.9 16.0 110 114-237 55-164 (247)
30 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.3E-18 5.1E-23 142.6 8.2 104 115-238 59-162 (243)
31 COG4123 Predicted O-methyltran 99.7 2.4E-17 5.3E-22 138.8 13.6 144 112-259 41-193 (248)
32 PRK14103 trans-aconitate 2-met 99.7 3E-17 6.5E-22 142.0 14.4 108 103-236 18-125 (255)
33 smart00828 PKS_MT Methyltransf 99.7 4.7E-17 1E-21 138.1 15.2 128 117-261 1-145 (224)
34 PRK00216 ubiE ubiquinone/menaq 99.7 1.3E-16 2.8E-21 136.4 18.0 155 104-277 41-239 (239)
35 TIGR01177 conserved hypothetic 99.7 1.3E-16 2.9E-21 142.8 17.8 157 95-264 163-319 (329)
36 COG2813 RsmC 16S RNA G1207 met 99.7 1.5E-16 3.3E-21 136.6 17.1 153 103-276 147-299 (300)
37 PRK15068 tRNA mo(5)U34 methylt 99.7 2.1E-16 4.5E-21 140.7 18.2 138 105-261 113-275 (322)
38 TIGR00740 methyltransferase, p 99.7 1.1E-16 2.4E-21 137.2 15.0 111 114-238 52-162 (239)
39 PRK11207 tellurite resistance 99.7 1.9E-16 4E-21 131.7 15.8 104 114-235 29-132 (197)
40 TIGR00537 hemK_rel_arch HemK-r 99.7 2E-16 4.3E-21 129.6 15.3 135 115-259 19-164 (179)
41 PRK10258 biotin biosynthesis p 99.7 1.2E-16 2.6E-21 138.0 13.4 116 97-237 25-140 (251)
42 PRK09489 rsmC 16S ribosomal RN 99.7 6.2E-16 1.3E-20 138.4 18.1 152 104-277 186-337 (342)
43 PLN02672 methionine S-methyltr 99.7 2E-16 4.2E-21 157.4 16.0 173 84-260 77-303 (1082)
44 PF02353 CMAS: Mycolic acid cy 99.7 3.9E-16 8.5E-21 135.4 16.0 115 102-235 50-164 (273)
45 PRK08287 cobalt-precorrin-6Y C 99.7 7.1E-16 1.5E-20 127.2 16.7 136 102-260 19-156 (187)
46 TIGR00452 methyltransferase, p 99.7 3.1E-16 6.7E-21 138.3 15.3 137 105-260 112-273 (314)
47 PF13649 Methyltransf_25: Meth 99.7 6.7E-17 1.4E-21 119.8 8.8 100 119-231 1-101 (101)
48 TIGR00138 gidB 16S rRNA methyl 99.7 7E-16 1.5E-20 126.2 15.2 124 115-260 42-169 (181)
49 TIGR02021 BchM-ChlM magnesium 99.7 1.8E-15 3.8E-20 128.0 17.2 145 102-265 41-211 (219)
50 PRK08317 hypothetical protein; 99.7 1.8E-15 3.8E-20 129.2 17.3 141 102-260 7-176 (241)
51 COG2230 Cfa Cyclopropane fatty 99.7 9.7E-16 2.1E-20 131.4 15.1 114 105-237 63-176 (283)
52 TIGR00477 tehB tellurite resis 99.7 6.3E-16 1.4E-20 128.3 13.6 104 114-236 29-132 (195)
53 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 3.2E-15 7E-20 126.4 17.9 149 105-275 30-222 (223)
54 PRK14968 putative methyltransf 99.7 3.2E-15 7E-20 123.1 17.0 144 114-264 22-177 (188)
55 TIGR02072 BioC biotin biosynth 99.7 9.1E-16 2E-20 131.1 13.8 141 98-260 15-176 (240)
56 PF13489 Methyltransf_23: Meth 99.7 4.1E-16 8.8E-21 125.0 10.9 97 113-238 20-116 (161)
57 TIGR02716 C20_methyl_CrtF C-20 99.7 3.9E-15 8.4E-20 132.2 17.1 137 104-258 139-304 (306)
58 PF13659 Methyltransf_26: Meth 99.7 3.9E-16 8.5E-21 118.7 9.1 112 117-237 2-115 (117)
59 PRK01683 trans-aconitate 2-met 99.7 7.4E-16 1.6E-20 133.6 11.6 111 102-236 19-129 (258)
60 PRK00377 cbiT cobalt-precorrin 99.7 5.3E-15 1.1E-19 123.1 16.1 134 107-260 33-169 (198)
61 PRK14967 putative methyltransf 99.7 5.3E-15 1.2E-19 125.4 16.4 141 113-261 34-185 (223)
62 COG2264 PrmA Ribosomal protein 99.7 3.6E-15 7.9E-20 128.9 15.2 139 101-262 150-290 (300)
63 PRK13944 protein-L-isoaspartat 99.7 3.7E-15 7.9E-20 124.7 14.8 117 98-236 56-172 (205)
64 KOG1270 Methyltransferases [Co 99.7 5E-16 1.1E-20 129.6 9.3 101 116-237 90-195 (282)
65 COG4106 Tam Trans-aconitate me 99.6 1.5E-15 3.2E-20 123.2 11.3 107 105-235 21-127 (257)
66 PRK00121 trmB tRNA (guanine-N( 99.6 8.1E-16 1.8E-20 128.3 10.1 132 115-255 40-176 (202)
67 KOG1271 Methyltransferases [Ge 99.6 3.8E-15 8.2E-20 117.6 12.4 155 98-260 47-205 (227)
68 PF05401 NodS: Nodulation prot 99.6 8E-15 1.7E-19 118.5 14.3 105 114-237 42-146 (201)
69 PRK12335 tellurite resistance 99.6 5.4E-15 1.2E-19 130.0 14.1 103 115-236 120-222 (287)
70 PRK05785 hypothetical protein; 99.6 1.2E-14 2.6E-19 123.2 15.7 91 115-231 51-141 (226)
71 smart00138 MeTrc Methyltransfe 99.6 2.2E-15 4.9E-20 130.6 11.5 113 115-237 99-242 (264)
72 PRK04266 fibrillarin; Provisio 99.6 1.9E-14 4.2E-19 121.5 16.6 139 100-260 55-210 (226)
73 PRK00517 prmA ribosomal protei 99.6 1.6E-14 3.4E-19 124.6 16.4 120 114-261 118-239 (250)
74 TIGR00091 tRNA (guanine-N(7)-) 99.6 2.6E-15 5.5E-20 124.6 10.8 140 115-263 16-161 (194)
75 PF08242 Methyltransf_12: Meth 99.6 1.4E-16 3.1E-21 117.6 2.9 97 120-233 1-99 (99)
76 COG2242 CobL Precorrin-6B meth 99.6 2.5E-14 5.5E-19 114.6 15.9 138 100-259 20-160 (187)
77 PLN03075 nicotianamine synthas 99.6 2.7E-14 5.9E-19 123.9 17.2 149 115-281 123-279 (296)
78 PRK06202 hypothetical protein; 99.6 1.8E-14 3.8E-19 123.0 15.4 106 114-235 59-164 (232)
79 TIGR02469 CbiT precorrin-6Y C5 99.6 2.2E-14 4.7E-19 109.9 14.3 114 102-236 7-121 (124)
80 PF06325 PrmA: Ribosomal prote 99.6 8.9E-15 1.9E-19 127.6 13.2 135 101-262 149-285 (295)
81 TIGR00080 pimt protein-L-isoas 99.6 1.8E-14 3.8E-19 121.5 14.5 116 98-236 61-176 (215)
82 TIGR00406 prmA ribosomal prote 99.6 1.9E-14 4.2E-19 126.5 15.3 124 114-260 158-283 (288)
83 PRK06922 hypothetical protein; 99.6 1.1E-14 2.4E-19 137.2 13.6 120 113-238 416-538 (677)
84 KOG4300 Predicted methyltransf 99.6 1.7E-14 3.7E-19 116.2 12.5 107 115-239 76-184 (252)
85 PF08003 Methyltransf_9: Prote 99.6 2.7E-14 5.9E-19 122.6 14.5 137 105-260 106-267 (315)
86 COG2519 GCD14 tRNA(1-methylade 99.6 2.3E-14 5E-19 119.9 13.6 144 99-264 79-224 (256)
87 PRK07580 Mg-protoporphyrin IX 99.6 8.4E-14 1.8E-18 118.5 16.7 130 114-262 62-216 (230)
88 PRK05134 bifunctional 3-demeth 99.6 5.7E-14 1.2E-18 119.9 15.7 136 103-259 37-204 (233)
89 PRK13942 protein-L-isoaspartat 99.6 3.9E-14 8.4E-19 119.1 14.3 116 98-236 60-175 (212)
90 PF03848 TehB: Tellurite resis 99.6 2.2E-14 4.7E-19 117.2 12.2 104 114-236 29-132 (192)
91 TIGR03587 Pse_Me-ase pseudamin 99.6 2.7E-14 5.8E-19 119.2 12.9 103 113-238 41-143 (204)
92 PRK07402 precorrin-6B methylas 99.6 1E-13 2.2E-18 115.3 15.5 137 100-258 26-168 (196)
93 PHA03411 putative methyltransf 99.6 3.4E-14 7.4E-19 121.5 12.3 129 115-254 64-208 (279)
94 TIGR01983 UbiG ubiquinone bios 99.6 1.5E-13 3.2E-18 116.5 15.6 127 115-260 45-203 (224)
95 PRK13168 rumA 23S rRNA m(5)U19 99.6 6.1E-14 1.3E-18 130.5 14.2 147 89-259 272-423 (443)
96 PRK11727 23S rRNA mA1618 methy 99.6 2.2E-13 4.8E-18 120.2 16.5 174 97-275 89-306 (321)
97 PRK11705 cyclopropane fatty ac 99.5 1E-13 2.2E-18 126.2 14.4 111 104-237 157-267 (383)
98 PLN02585 magnesium protoporphy 99.5 5.1E-13 1.1E-17 118.1 17.0 140 100-259 127-298 (315)
99 TIGR03840 TMPT_Se_Te thiopurin 99.5 1.3E-13 2.8E-18 115.7 12.5 107 114-236 33-151 (213)
100 PLN02336 phosphoethanolamine N 99.5 2.2E-13 4.8E-18 128.1 15.3 134 104-257 27-179 (475)
101 PF08704 GCD14: tRNA methyltra 99.5 2.3E-13 5E-18 115.7 13.4 144 100-264 26-175 (247)
102 COG1041 Predicted DNA modifica 99.5 6E-13 1.3E-17 116.6 16.0 171 92-275 175-345 (347)
103 PRK11188 rrmJ 23S rRNA methylt 99.5 2.9E-13 6.3E-18 113.4 13.2 137 113-266 49-195 (209)
104 PRK11783 rlmL 23S rRNA m(2)G24 99.5 2.9E-13 6.2E-18 132.3 15.1 144 115-264 538-684 (702)
105 PRK11088 rrmA 23S rRNA methylt 99.5 1.9E-13 4E-18 119.4 11.8 98 115-238 85-182 (272)
106 KOG3191 Predicted N6-DNA-methy 99.5 8.5E-13 1.8E-17 104.4 14.0 143 116-264 44-197 (209)
107 TIGR00446 nop2p NOL1/NOP2/sun 99.5 6.2E-13 1.3E-17 115.5 14.8 125 112-240 68-202 (264)
108 PTZ00146 fibrillarin; Provisio 99.5 1.7E-12 3.6E-17 112.4 16.7 144 97-260 112-271 (293)
109 COG2518 Pcm Protein-L-isoaspar 99.5 7.4E-13 1.6E-17 108.5 13.6 113 98-236 56-168 (209)
110 PRK00312 pcm protein-L-isoaspa 99.5 8.9E-13 1.9E-17 110.9 14.5 113 98-236 62-174 (212)
111 PRK14903 16S rRNA methyltransf 99.5 8.6E-13 1.9E-17 122.0 15.1 125 112-240 234-369 (431)
112 PF01170 UPF0020: Putative RNA 99.5 1.6E-12 3.5E-17 106.2 14.9 156 93-256 7-167 (179)
113 PF01135 PCMT: Protein-L-isoas 99.5 3.9E-13 8.5E-18 112.0 11.3 116 98-236 56-171 (209)
114 PF05219 DREV: DREV methyltran 99.5 4E-12 8.6E-17 107.0 17.0 160 13-235 23-186 (265)
115 COG4976 Predicted methyltransf 99.5 1.4E-13 3.1E-18 112.6 8.1 153 100-277 111-286 (287)
116 PRK14901 16S rRNA methyltransf 99.5 7.9E-13 1.7E-17 122.7 14.1 152 98-254 236-407 (434)
117 TIGR03438 probable methyltrans 99.5 1.3E-12 2.9E-17 115.5 15.0 109 114-235 62-175 (301)
118 PRK10901 16S rRNA methyltransf 99.5 1E-12 2.3E-17 121.7 14.6 135 98-239 228-374 (427)
119 PRK03522 rumB 23S rRNA methylu 99.5 6E-13 1.3E-17 118.5 12.0 151 84-259 143-295 (315)
120 TIGR00563 rsmB ribosomal RNA s 99.5 1.3E-12 2.9E-17 121.0 14.4 137 99-240 223-371 (426)
121 PRK04457 spermidine synthase; 99.5 1.1E-12 2.3E-17 113.7 12.9 142 101-255 52-197 (262)
122 PRK14121 tRNA (guanine-N(7)-)- 99.5 8.5E-13 1.8E-17 118.7 12.6 112 115-237 122-235 (390)
123 PRK15128 23S rRNA m(5)C1962 me 99.5 7.4E-13 1.6E-17 120.7 12.5 128 115-250 220-355 (396)
124 PHA03412 putative methyltransf 99.5 4.8E-13 1E-17 112.0 10.2 111 116-235 50-160 (241)
125 PRK13255 thiopurine S-methyltr 99.4 2.7E-12 5.9E-17 108.0 14.6 106 114-235 36-153 (218)
126 PRK14902 16S rRNA methyltransf 99.4 2.7E-12 5.9E-17 119.6 16.0 143 112-258 247-406 (444)
127 PLN02232 ubiquinone biosynthes 99.4 1.2E-12 2.5E-17 105.2 11.3 106 147-264 1-151 (160)
128 TIGR00438 rrmJ cell division p 99.4 6.5E-12 1.4E-16 103.6 16.1 143 110-269 27-179 (188)
129 TIGR00479 rumA 23S rRNA (uraci 99.4 1.2E-12 2.5E-17 121.7 12.9 148 87-257 265-417 (431)
130 KOG2361 Predicted methyltransf 99.4 6.9E-13 1.5E-17 109.6 9.9 129 117-259 73-236 (264)
131 PRK14904 16S rRNA methyltransf 99.4 3.1E-12 6.8E-17 119.1 15.5 124 112-240 247-380 (445)
132 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.8E-12 3.9E-17 107.3 12.2 120 99-237 37-159 (199)
133 TIGR02085 meth_trns_rumB 23S r 99.4 1.9E-12 4.1E-17 117.8 12.9 151 83-258 202-354 (374)
134 TIGR02081 metW methionine bios 99.4 2.1E-12 4.5E-17 107.1 11.9 119 115-259 13-166 (194)
135 smart00650 rADc Ribosomal RNA 99.4 3.1E-12 6.7E-17 103.8 12.0 88 104-201 3-90 (169)
136 PLN02781 Probable caffeoyl-CoA 99.4 1.7E-12 3.8E-17 110.6 10.8 107 113-237 66-178 (234)
137 KOG3010 Methyltransferase [Gen 99.4 1.2E-12 2.5E-17 108.3 9.1 116 117-251 35-155 (261)
138 PRK13943 protein-L-isoaspartat 99.4 6.1E-12 1.3E-16 111.5 13.9 115 99-236 65-179 (322)
139 COG2263 Predicted RNA methylas 99.4 2.2E-11 4.8E-16 97.5 14.5 123 115-259 45-167 (198)
140 PF06080 DUF938: Protein of un 99.4 3.1E-11 6.8E-16 98.9 15.4 141 118-276 28-204 (204)
141 cd02440 AdoMet_MTases S-adenos 99.3 1.6E-11 3.5E-16 89.8 10.8 101 118-236 1-103 (107)
142 KOG1541 Predicted protein carb 99.3 2E-11 4.4E-16 99.5 11.8 149 98-260 32-187 (270)
143 COG4122 Predicted O-methyltran 99.3 1.8E-11 3.8E-16 101.9 10.9 116 106-239 50-168 (219)
144 PRK13256 thiopurine S-methyltr 99.3 1.1E-10 2.3E-15 98.2 14.9 122 98-237 28-163 (226)
145 PRK00811 spermidine synthase; 99.3 1.3E-11 2.8E-16 108.2 9.5 133 115-260 76-219 (283)
146 PLN02476 O-methyltransferase 99.3 3.4E-11 7.4E-16 104.1 11.8 113 106-236 109-227 (278)
147 PRK05031 tRNA (uracil-5-)-meth 99.3 4.3E-11 9.2E-16 108.5 12.9 157 87-271 180-353 (362)
148 PF07021 MetW: Methionine bios 99.3 3.1E-11 6.8E-16 97.5 10.5 88 114-226 12-101 (193)
149 PF01739 CheR: CheR methyltran 99.3 2.1E-11 4.6E-16 100.6 9.6 130 98-237 11-175 (196)
150 COG2265 TrmA SAM-dependent met 99.3 4.7E-11 1E-15 109.7 12.8 144 88-254 267-414 (432)
151 PF01596 Methyltransf_3: O-met 99.3 1.2E-11 2.6E-16 102.8 8.0 107 114-238 44-156 (205)
152 PF12147 Methyltransf_20: Puta 99.3 4.6E-10 1E-14 95.8 17.3 141 114-266 134-304 (311)
153 PRK01581 speE spermidine synth 99.3 1.1E-10 2.3E-15 103.9 13.3 141 114-265 149-302 (374)
154 TIGR00095 RNA methyltransferas 99.2 1.3E-10 2.8E-15 95.8 12.3 117 101-235 35-157 (189)
155 PF05148 Methyltransf_8: Hypot 99.2 8.2E-11 1.8E-15 96.0 10.4 120 104-259 61-184 (219)
156 PRK04338 N(2),N(2)-dimethylgua 99.2 7.1E-11 1.5E-15 107.3 10.9 127 89-236 31-157 (382)
157 PTZ00338 dimethyladenosine tra 99.2 8.4E-11 1.8E-15 103.2 10.9 103 91-202 13-115 (294)
158 PF05891 Methyltransf_PK: AdoM 99.2 5.8E-11 1.3E-15 97.8 9.0 135 115-266 55-206 (218)
159 PF05724 TPMT: Thiopurine S-me 99.2 2.3E-10 4.9E-15 96.3 12.5 143 98-259 22-189 (218)
160 PRK00274 ksgA 16S ribosomal RN 99.2 7.5E-11 1.6E-15 102.9 9.9 100 91-201 19-118 (272)
161 PRK10611 chemotaxis methyltran 99.2 9.4E-11 2E-15 102.1 10.4 112 115-236 115-261 (287)
162 PRK14896 ksgA 16S ribosomal RN 99.2 1.3E-10 2.9E-15 100.6 11.1 99 91-201 6-104 (258)
163 PRK03612 spermidine synthase; 99.2 8E-11 1.7E-15 111.5 10.1 129 114-253 296-437 (521)
164 PF00891 Methyltransf_2: O-met 99.2 2.6E-10 5.6E-15 97.9 12.3 103 112-239 97-201 (241)
165 COG2521 Predicted archaeal met 99.2 6.9E-11 1.5E-15 97.2 8.1 136 114-264 133-281 (287)
166 COG1092 Predicted SAM-dependen 99.2 2.2E-10 4.8E-15 103.4 12.0 118 115-240 217-339 (393)
167 PF10294 Methyltransf_16: Puta 99.2 1.7E-10 3.7E-15 93.8 9.8 108 113-237 43-156 (173)
168 TIGR02143 trmA_only tRNA (urac 99.2 4.5E-10 9.9E-15 101.4 13.2 125 87-237 171-311 (353)
169 PRK11783 rlmL 23S rRNA m(2)G24 99.1 8.9E-10 1.9E-14 108.0 15.0 137 94-238 169-348 (702)
170 PF03602 Cons_hypoth95: Conser 99.1 1.3E-10 2.7E-15 95.2 7.5 121 98-235 24-151 (183)
171 PLN02589 caffeoyl-CoA O-methyl 99.1 3.4E-10 7.3E-15 96.7 10.0 104 114-235 78-188 (247)
172 TIGR00755 ksgA dimethyladenosi 99.1 9.5E-10 2.1E-14 95.0 13.0 99 91-201 6-107 (253)
173 TIGR00417 speE spermidine synt 99.1 4.3E-10 9.2E-15 98.1 10.7 110 115-236 72-185 (270)
174 PF02390 Methyltransf_4: Putat 99.1 9.5E-10 2E-14 91.0 11.9 130 118-257 20-157 (195)
175 KOG3045 Predicted RNA methylas 99.1 5.4E-10 1.2E-14 93.4 10.3 124 104-265 169-296 (325)
176 COG0116 Predicted N6-adenine-s 99.1 2.4E-09 5.3E-14 95.4 14.9 142 92-238 169-345 (381)
177 PF03291 Pox_MCEL: mRNA cappin 99.1 1.1E-09 2.4E-14 97.6 12.5 110 115-237 62-186 (331)
178 KOG2899 Predicted methyltransf 99.1 4.6E-10 1E-14 92.9 9.3 111 113-235 56-207 (288)
179 PF02475 Met_10: Met-10+ like- 99.1 5.4E-10 1.2E-14 92.3 9.6 101 113-234 99-199 (200)
180 COG3963 Phospholipid N-methylt 99.1 6.3E-09 1.4E-13 81.5 14.3 157 97-276 31-192 (194)
181 PLN02366 spermidine synthase 99.1 1E-09 2.2E-14 96.9 11.1 110 114-235 90-204 (308)
182 PF10672 Methyltrans_SAM: S-ad 99.1 6.4E-10 1.4E-14 96.7 9.4 136 115-262 123-265 (286)
183 PRK11933 yebU rRNA (cytosine-C 99.1 3E-09 6.5E-14 98.9 14.4 125 113-241 111-246 (470)
184 KOG1499 Protein arginine N-met 99.1 1.2E-09 2.7E-14 95.5 10.9 107 113-234 58-164 (346)
185 KOG2940 Predicted methyltransf 99.1 2.8E-10 6.1E-15 93.4 6.4 142 98-259 54-226 (325)
186 PF05185 PRMT5: PRMT5 arginine 99.0 2.5E-09 5.5E-14 99.0 12.2 108 116-234 187-294 (448)
187 COG1352 CheR Methylase of chem 99.0 3.2E-09 6.9E-14 91.4 11.6 127 100-236 79-240 (268)
188 KOG3987 Uncharacterized conser 99.0 5.2E-10 1.1E-14 90.4 6.2 163 10-235 40-205 (288)
189 KOG2915 tRNA(1-methyladenosine 99.0 1.3E-08 2.7E-13 85.9 13.3 138 105-263 96-238 (314)
190 PF05958 tRNA_U5-meth_tr: tRNA 99.0 3.8E-09 8.2E-14 95.4 11.1 107 87-202 170-292 (352)
191 COG0742 N6-adenine-specific me 99.0 9.7E-09 2.1E-13 83.1 12.2 123 97-235 24-152 (187)
192 COG0144 Sun tRNA and rRNA cyto 99.0 2.1E-08 4.5E-13 90.6 14.9 152 103-257 144-314 (355)
193 KOG3420 Predicted RNA methylas 98.9 1.3E-09 2.9E-14 83.2 5.2 96 98-200 28-126 (185)
194 COG0220 Predicted S-adenosylme 98.9 6.8E-09 1.5E-13 87.5 8.8 112 117-237 50-164 (227)
195 PF02384 N6_Mtase: N-6 DNA Met 98.9 2.5E-08 5.3E-13 88.8 12.6 150 102-252 34-205 (311)
196 COG2520 Predicted methyltransf 98.9 3E-08 6.4E-13 87.9 12.8 109 114-243 187-295 (341)
197 KOG1975 mRNA cap methyltransfe 98.9 2.9E-08 6.2E-13 85.7 11.1 124 114-251 116-250 (389)
198 COG0030 KsgA Dimethyladenosine 98.9 2.4E-08 5.2E-13 85.2 10.5 101 92-202 8-109 (259)
199 PLN02823 spermine synthase 98.9 1.7E-08 3.7E-13 90.1 10.1 111 115-235 103-218 (336)
200 KOG0820 Ribosomal RNA adenine 98.8 2.3E-08 4.9E-13 84.4 10.0 95 99-202 43-137 (315)
201 PF09445 Methyltransf_15: RNA 98.8 5.7E-09 1.2E-13 83.1 6.0 76 118-199 2-80 (163)
202 TIGR02987 met_A_Alw26 type II 98.8 3.8E-08 8.1E-13 93.8 12.7 87 115-202 31-126 (524)
203 PF05971 Methyltransf_10: Prot 98.8 2E-08 4.3E-13 87.4 9.2 168 101-274 84-295 (299)
204 TIGR00308 TRM1 tRNA(guanine-26 98.8 1.7E-08 3.6E-13 91.5 8.8 127 90-236 16-146 (374)
205 KOG3178 Hydroxyindole-O-methyl 98.8 9.2E-08 2E-12 84.0 12.8 100 115-238 177-276 (342)
206 PF11968 DUF3321: Putative met 98.8 1.6E-07 3.4E-12 77.4 13.4 143 99-278 32-194 (219)
207 KOG1663 O-methyltransferase [S 98.8 5.5E-08 1.2E-12 80.4 10.3 105 114-236 72-182 (237)
208 KOG1500 Protein arginine N-met 98.8 1.2E-07 2.6E-12 82.3 12.3 123 115-254 177-306 (517)
209 TIGR03439 methyl_EasF probable 98.7 4.3E-07 9.4E-12 80.4 15.0 111 114-235 75-195 (319)
210 PF02527 GidB: rRNA small subu 98.7 2.6E-07 5.6E-12 75.5 12.6 99 118-238 51-149 (184)
211 COG0421 SpeE Spermidine syntha 98.7 4.5E-08 9.7E-13 85.1 8.1 108 117-236 78-189 (282)
212 PF04816 DUF633: Family of unk 98.7 2.3E-07 5E-12 77.1 11.9 122 119-259 1-123 (205)
213 PRK01544 bifunctional N5-gluta 98.7 1.3E-07 2.9E-12 89.3 11.3 133 115-256 347-484 (506)
214 KOG1661 Protein-L-isoaspartate 98.7 1.6E-07 3.5E-12 76.4 9.7 103 113-235 80-191 (237)
215 TIGR00478 tly hemolysin TlyA f 98.7 4.7E-07 1E-11 76.5 12.7 98 105-235 65-169 (228)
216 PRK00536 speE spermidine synth 98.7 1.9E-07 4.1E-12 80.3 10.1 132 69-235 35-169 (262)
217 PF00398 RrnaAD: Ribosomal RNA 98.7 5.2E-07 1.1E-11 78.3 12.8 100 91-200 7-109 (262)
218 PF03141 Methyltransf_29: Puta 98.6 4.5E-08 9.8E-13 89.6 5.4 132 118-279 120-263 (506)
219 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 3.4E-07 7.3E-12 80.3 10.6 142 105-250 75-236 (283)
220 PF07942 N2227: N2227-like pro 98.6 1.7E-06 3.6E-11 74.6 14.1 128 115-260 56-242 (270)
221 PF09243 Rsm22: Mitochondrial 98.6 1.7E-06 3.7E-11 75.5 13.9 127 115-257 33-165 (274)
222 PRK00050 16S rRNA m(4)C1402 me 98.6 2.3E-07 4.9E-12 81.3 8.1 93 102-201 7-103 (296)
223 KOG2187 tRNA uracil-5-methyltr 98.6 4E-07 8.7E-12 83.4 9.7 129 88-238 357-491 (534)
224 PRK04148 hypothetical protein; 98.5 2.1E-06 4.5E-11 66.0 12.0 81 102-197 4-86 (134)
225 PF01564 Spermine_synth: Sperm 98.5 3.2E-07 7E-12 78.7 8.1 110 115-236 76-190 (246)
226 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 6.3E-07 1.4E-11 76.7 9.4 133 115-260 56-239 (256)
227 COG0357 GidB Predicted S-adeno 98.5 2.3E-06 5.1E-11 71.2 12.3 123 116-260 68-195 (215)
228 KOG2730 Methylase [General fun 98.5 2.1E-07 4.6E-12 76.2 5.5 102 88-199 71-176 (263)
229 PF01269 Fibrillarin: Fibrilla 98.4 1.8E-05 3.9E-10 65.7 15.3 150 96-266 52-217 (229)
230 PF08123 DOT1: Histone methyla 98.4 3.3E-06 7.1E-11 70.3 9.9 121 98-236 26-157 (205)
231 KOG1269 SAM-dependent methyltr 98.4 9.2E-07 2E-11 79.6 6.8 136 114-266 109-273 (364)
232 COG3897 Predicted methyltransf 98.4 2.2E-06 4.8E-11 69.2 8.1 112 102-237 67-178 (218)
233 PF01728 FtsJ: FtsJ-like methy 98.3 1.7E-06 3.7E-11 70.8 7.3 129 115-260 23-163 (181)
234 PF01861 DUF43: Protein of unk 98.3 3.5E-05 7.6E-10 64.8 14.2 132 115-267 44-185 (243)
235 KOG1122 tRNA and rRNA cytosine 98.3 1.3E-05 2.8E-10 71.9 11.8 123 113-240 239-374 (460)
236 PF13679 Methyltransf_32: Meth 98.2 2.6E-05 5.7E-10 61.1 12.0 87 114-201 24-112 (141)
237 COG0293 FtsJ 23S rRNA methylas 98.2 0.00011 2.3E-09 60.7 14.6 128 113-260 43-183 (205)
238 COG0500 SmtA SAM-dependent met 98.2 3.5E-05 7.5E-10 60.2 11.5 103 119-239 52-157 (257)
239 COG4076 Predicted RNA methylas 98.1 4.9E-06 1.1E-10 66.7 6.0 99 117-234 34-132 (252)
240 PF13578 Methyltransf_24: Meth 98.1 1.1E-06 2.3E-11 65.4 2.0 103 120-237 1-105 (106)
241 PF06962 rRNA_methylase: Putat 98.1 2.5E-05 5.4E-10 60.4 9.5 92 145-239 1-94 (140)
242 COG2384 Predicted SAM-dependen 98.1 6.3E-05 1.4E-09 62.2 12.1 125 116-258 17-141 (226)
243 COG0286 HsdM Type I restrictio 98.1 7.1E-05 1.5E-09 70.6 13.3 136 99-235 171-324 (489)
244 PF03059 NAS: Nicotianamine sy 98.1 5E-05 1.1E-09 65.8 11.0 108 116-236 121-229 (276)
245 KOG1331 Predicted methyltransf 98.1 5.8E-06 1.3E-10 70.7 5.0 108 101-235 34-141 (293)
246 PF11599 AviRa: RRNA methyltra 98.0 0.00011 2.5E-09 60.3 12.0 134 98-237 35-214 (246)
247 COG4262 Predicted spermidine s 98.0 6E-05 1.3E-09 66.6 10.9 142 114-266 288-442 (508)
248 COG3129 Predicted SAM-dependen 98.0 2.2E-05 4.7E-10 65.1 6.8 108 91-202 49-167 (292)
249 KOG1709 Guanidinoacetate methy 98.0 0.00012 2.5E-09 60.3 10.6 108 114-240 100-209 (271)
250 COG1889 NOP1 Fibrillarin-like 98.0 0.00052 1.1E-08 56.0 14.2 148 97-266 56-219 (231)
251 PRK10742 putative methyltransf 97.9 0.00017 3.6E-09 61.3 11.3 79 118-202 91-178 (250)
252 TIGR01444 fkbM_fam methyltrans 97.9 4.5E-05 9.8E-10 59.7 7.4 59 118-181 1-59 (143)
253 COG0275 Predicted S-adenosylme 97.9 0.00051 1.1E-08 59.6 13.7 89 101-195 10-103 (314)
254 PF02005 TRM: N2,N2-dimethylgu 97.9 5.7E-05 1.2E-09 68.7 8.1 128 90-236 20-153 (377)
255 TIGR00006 S-adenosyl-methyltra 97.8 0.00017 3.7E-09 63.4 9.8 93 101-200 7-104 (305)
256 COG4798 Predicted methyltransf 97.8 0.00047 1E-08 55.8 11.3 141 113-262 46-207 (238)
257 KOG2798 Putative trehalase [Ca 97.8 0.0006 1.3E-08 59.2 12.1 127 116-260 151-337 (369)
258 KOG2198 tRNA cytosine-5-methyl 97.7 0.00097 2.1E-08 59.3 13.7 152 112-264 152-330 (375)
259 KOG3201 Uncharacterized conser 97.7 6.6E-05 1.4E-09 58.9 5.1 140 100-256 15-162 (201)
260 PRK11760 putative 23S rRNA C24 97.7 0.00018 4E-09 63.7 8.4 88 113-230 209-296 (357)
261 KOG2671 Putative RNA methylase 97.7 0.00014 2.9E-09 63.9 7.2 121 112-238 205-355 (421)
262 PF01795 Methyltransf_5: MraW 97.6 0.00015 3.3E-09 63.7 7.1 89 102-197 8-102 (310)
263 COG1189 Predicted rRNA methyla 97.6 0.00054 1.2E-08 57.4 9.4 96 114-235 78-176 (245)
264 KOG2352 Predicted spermine/spe 97.6 0.00046 9.9E-09 63.5 9.6 112 118-238 51-162 (482)
265 PF04672 Methyltransf_19: S-ad 97.6 0.0016 3.4E-08 56.0 12.0 124 102-238 55-191 (267)
266 KOG4589 Cell division protein 97.5 0.0016 3.5E-08 52.5 10.8 124 113-260 67-208 (232)
267 KOG4058 Uncharacterized conser 97.4 0.0032 6.9E-08 48.8 10.9 117 99-238 57-173 (199)
268 KOG0822 Protein kinase inhibit 97.4 0.00075 1.6E-08 62.5 8.0 123 102-235 352-476 (649)
269 PF03141 Methyltransf_29: Puta 97.3 0.00045 9.7E-09 63.9 6.4 134 117-276 367-506 (506)
270 PF04989 CmcI: Cephalosporin h 97.3 0.002 4.2E-08 53.3 9.3 105 116-235 33-145 (206)
271 COG1867 TRM1 N2,N2-dimethylgua 97.3 0.0014 3E-08 58.4 8.8 125 90-236 28-153 (380)
272 COG5459 Predicted rRNA methyla 97.2 0.0016 3.6E-08 57.4 7.8 122 115-250 113-238 (484)
273 KOG3115 Methyltransferase-like 97.1 0.0016 3.4E-08 53.2 6.6 113 117-237 62-183 (249)
274 PF07091 FmrO: Ribosomal RNA m 97.1 0.0034 7.4E-08 53.3 8.9 82 114-202 104-185 (251)
275 cd00315 Cyt_C5_DNA_methylase C 97.0 0.01 2.2E-07 52.0 11.4 129 118-259 2-142 (275)
276 KOG1501 Arginine N-methyltrans 97.0 0.0029 6.3E-08 57.4 7.7 73 117-194 68-141 (636)
277 COG4301 Uncharacterized conser 97.0 0.032 7E-07 47.2 13.2 112 113-235 76-191 (321)
278 PRK13699 putative methylase; P 97.0 0.0028 6.1E-08 53.8 7.1 85 173-257 3-93 (227)
279 KOG2793 Putative N2,N2-dimethy 97.0 0.014 3.1E-07 49.8 11.3 108 115-240 86-202 (248)
280 PRK11524 putative methyltransf 96.9 0.0035 7.5E-08 55.1 7.6 86 172-257 9-100 (284)
281 KOG1099 SAM-dependent methyltr 96.7 0.0053 1.1E-07 51.2 6.7 108 115-235 41-161 (294)
282 PF10354 DUF2431: Domain of un 96.6 0.042 9.2E-07 44.2 11.3 136 122-260 3-152 (166)
283 KOG1562 Spermidine synthase [A 96.6 0.0048 1E-07 53.3 5.8 111 113-237 119-236 (337)
284 KOG1253 tRNA methyltransferase 96.5 0.0013 2.8E-08 60.5 2.2 105 113-236 107-215 (525)
285 PF02636 Methyltransf_28: Puta 96.5 0.0093 2E-07 51.4 7.3 82 116-202 19-109 (252)
286 PRK11524 putative methyltransf 96.4 0.012 2.6E-07 51.7 7.6 58 100-165 195-252 (284)
287 PF00145 DNA_methylase: C-5 cy 96.4 0.027 5.9E-07 50.1 9.9 134 118-265 2-147 (335)
288 PF01555 N6_N4_Mtase: DNA meth 96.4 0.012 2.7E-07 49.3 7.2 56 98-161 176-231 (231)
289 PF03492 Methyltransf_7: SAM d 96.3 0.092 2E-06 47.2 12.5 123 114-236 15-182 (334)
290 PRK01747 mnmC bifunctional tRN 96.3 0.05 1.1E-06 53.7 11.5 143 115-276 57-239 (662)
291 PLN02668 indole-3-acetate carb 96.3 0.053 1.1E-06 49.5 10.7 121 116-236 64-236 (386)
292 COG1565 Uncharacterized conser 96.2 0.022 4.8E-07 50.9 8.0 96 102-202 62-163 (370)
293 TIGR00497 hsdM type I restrict 96.2 0.073 1.6E-06 50.7 12.2 134 100-235 201-353 (501)
294 KOG1227 Putative methyltransfe 96.2 0.0016 3.4E-08 56.3 0.8 74 116-195 195-269 (351)
295 PF04445 SAM_MT: Putative SAM- 96.2 0.03 6.5E-07 47.4 8.3 78 117-200 77-163 (234)
296 KOG2912 Predicted DNA methylas 96.0 0.22 4.7E-06 43.8 12.6 144 119-266 106-281 (419)
297 COG1064 AdhP Zn-dependent alco 96.0 0.055 1.2E-06 48.4 9.3 96 113-239 164-261 (339)
298 COG4627 Uncharacterized protei 96.0 0.0031 6.7E-08 49.3 1.3 46 180-235 39-84 (185)
299 PRK13699 putative methylase; P 95.9 0.036 7.8E-07 47.0 7.6 59 100-166 150-208 (227)
300 PTZ00357 methyltransferase; Pr 95.8 0.057 1.2E-06 52.1 9.1 77 118-194 703-798 (1072)
301 COG1568 Predicted methyltransf 95.8 0.04 8.6E-07 47.4 7.1 130 116-266 153-294 (354)
302 KOG1596 Fibrillarin and relate 95.8 0.059 1.3E-06 45.4 8.0 118 97-235 136-259 (317)
303 PF06859 Bin3: Bicoid-interact 95.6 0.0082 1.8E-07 44.3 2.0 42 188-235 1-42 (110)
304 PF05711 TylF: Macrocin-O-meth 95.5 0.35 7.5E-06 41.5 12.0 137 105-255 64-233 (248)
305 PHA01634 hypothetical protein 95.4 0.1 2.2E-06 39.6 7.4 72 115-195 28-99 (156)
306 PRK09424 pntA NAD(P) transhydr 95.2 0.19 4.1E-06 47.7 10.5 100 114-238 163-286 (509)
307 COG2961 ComJ Protein involved 95.1 0.39 8.4E-06 40.8 10.8 131 101-254 75-216 (279)
308 PF10237 N6-adenineMlase: Prob 95.1 0.71 1.5E-05 36.9 11.8 115 115-259 25-143 (162)
309 PF05430 Methyltransf_30: S-ad 94.7 0.052 1.1E-06 41.4 4.2 91 172-277 33-124 (124)
310 TIGR00675 dcm DNA-methyltransf 94.6 0.25 5.5E-06 44.1 9.1 127 119-258 1-138 (315)
311 COG0270 Dcm Site-specific DNA 94.3 0.23 5E-06 44.6 8.4 127 116-254 3-141 (328)
312 cd08283 FDH_like_1 Glutathione 94.3 0.47 1E-05 43.5 10.4 115 112-238 181-307 (386)
313 COG1063 Tdh Threonine dehydrog 94.2 0.16 3.4E-06 46.1 7.1 100 115-240 168-272 (350)
314 PRK09880 L-idonate 5-dehydroge 94.2 0.21 4.6E-06 44.9 8.0 100 114-238 168-267 (343)
315 PF11312 DUF3115: Protein of u 94.2 0.31 6.8E-06 42.9 8.5 117 116-239 87-244 (315)
316 PF02254 TrkA_N: TrkA-N domain 94.1 1.3 2.8E-05 32.8 10.8 106 124-256 4-113 (116)
317 PF07279 DUF1442: Protein of u 94.0 0.97 2.1E-05 37.7 10.5 80 114-195 40-122 (218)
318 PRK07533 enoyl-(acyl carrier p 94.0 1.3 2.7E-05 38.1 12.0 78 116-198 10-98 (258)
319 PF07757 AdoMet_MTase: Predict 94.0 0.043 9.3E-07 40.3 2.3 32 115-152 58-89 (112)
320 COG3510 CmcI Cephalosporin hyd 93.8 0.44 9.6E-06 38.9 8.0 103 116-236 70-179 (237)
321 KOG0024 Sorbitol dehydrogenase 93.6 0.26 5.6E-06 43.6 6.8 100 112-238 166-274 (354)
322 KOG2920 Predicted methyltransf 93.6 0.091 2E-06 45.5 4.0 104 114-235 115-232 (282)
323 KOG2078 tRNA modification enzy 93.6 0.043 9.3E-07 49.9 2.1 63 113-181 247-310 (495)
324 KOG2352 Predicted spermine/spe 93.5 0.09 1.9E-06 48.8 4.1 115 115-240 295-419 (482)
325 PRK07576 short chain dehydroge 93.0 3.2 6.9E-05 35.7 12.9 77 116-197 9-95 (264)
326 PRK06940 short chain dehydroge 92.7 1 2.2E-05 39.1 9.5 74 118-198 4-86 (275)
327 PF11899 DUF3419: Protein of u 92.7 0.23 5.1E-06 45.4 5.5 76 170-255 275-354 (380)
328 KOG1201 Hydroxysteroid 17-beta 92.7 6.6 0.00014 34.5 15.3 80 115-200 37-126 (300)
329 cd08254 hydroxyacyl_CoA_DH 6-h 92.6 1.8 4E-05 38.3 11.2 98 111-238 161-264 (338)
330 PRK08594 enoyl-(acyl carrier p 92.3 3.2 6.8E-05 35.6 11.9 77 116-198 7-97 (257)
331 COG0541 Ffh Signal recognition 92.3 2.2 4.7E-05 39.4 11.0 131 115-259 99-247 (451)
332 KOG0780 Signal recognition par 92.1 1.2 2.5E-05 40.6 8.9 129 117-259 102-248 (483)
333 cd00401 AdoHcyase S-adenosyl-L 91.8 2 4.3E-05 39.9 10.4 103 102-239 188-291 (413)
334 PRK07523 gluconate 5-dehydroge 91.8 4.4 9.6E-05 34.4 12.2 79 116-199 10-98 (255)
335 cd05188 MDR Medium chain reduc 91.6 0.98 2.1E-05 38.4 8.0 101 109-239 128-234 (271)
336 TIGR00561 pntA NAD(P) transhyd 91.6 0.63 1.4E-05 44.2 7.1 95 115-234 163-281 (511)
337 PRK06914 short chain dehydroge 91.4 6 0.00013 34.1 12.8 79 117-198 4-91 (280)
338 KOG2651 rRNA adenine N-6-methy 91.4 0.57 1.2E-05 42.3 6.1 52 106-162 144-195 (476)
339 PF00107 ADH_zinc_N: Zinc-bind 91.3 0.62 1.3E-05 35.2 5.8 85 126-240 2-92 (130)
340 KOG2539 Mitochondrial/chloropl 91.3 0.63 1.4E-05 43.1 6.5 119 115-244 200-322 (491)
341 PRK07109 short chain dehydroge 91.2 5.7 0.00012 35.6 12.8 78 116-198 8-95 (334)
342 PF05050 Methyltransf_21: Meth 91.2 0.72 1.6E-05 36.3 6.3 56 121-178 1-60 (167)
343 PRK06079 enoyl-(acyl carrier p 91.2 3.9 8.4E-05 34.9 11.2 77 116-199 7-94 (252)
344 COG0686 Ald Alanine dehydrogen 91.1 0.57 1.2E-05 41.3 5.7 98 116-235 168-266 (371)
345 PRK08415 enoyl-(acyl carrier p 91.0 5.9 0.00013 34.4 12.4 78 116-198 5-93 (274)
346 PRK08265 short chain dehydroge 90.7 4.9 0.00011 34.4 11.5 75 116-198 6-90 (261)
347 PRK06124 gluconate 5-dehydroge 90.6 9 0.00019 32.4 13.0 79 115-198 10-98 (256)
348 PF01555 N6_N4_Mtase: DNA meth 90.5 0.56 1.2E-05 39.1 5.3 69 189-257 1-80 (231)
349 PF02719 Polysacc_synt_2: Poly 90.3 0.72 1.6E-05 40.5 5.8 78 124-202 5-91 (293)
350 PRK05786 fabG 3-ketoacyl-(acyl 90.3 7 0.00015 32.6 11.9 116 116-237 5-135 (238)
351 PRK07062 short chain dehydroge 90.3 9.6 0.00021 32.5 13.0 80 116-198 8-97 (265)
352 PRK06197 short chain dehydroge 90.2 9.9 0.00021 33.4 13.2 81 116-199 16-106 (306)
353 KOG3924 Putative protein methy 90.2 1.5 3.2E-05 39.9 7.7 119 101-237 179-308 (419)
354 PRK08213 gluconate 5-dehydroge 90.2 7.7 0.00017 33.0 12.2 78 116-198 12-99 (259)
355 COG1748 LYS9 Saccharopine dehy 90.1 3 6.5E-05 38.2 9.8 74 117-198 2-78 (389)
356 cd08232 idonate-5-DH L-idonate 89.9 2.2 4.8E-05 38.0 9.0 93 115-237 165-262 (339)
357 PRK06505 enoyl-(acyl carrier p 89.8 8 0.00017 33.4 12.1 79 116-199 7-96 (271)
358 PRK07063 short chain dehydroge 89.8 11 0.00024 32.0 12.9 80 116-198 7-96 (260)
359 PRK09242 tropinone reductase; 89.8 11 0.00025 31.9 13.3 80 116-198 9-98 (257)
360 PF13561 adh_short_C2: Enoyl-( 89.8 2.7 5.8E-05 35.5 8.9 107 123-237 1-133 (241)
361 PRK06701 short chain dehydroge 89.7 9 0.0002 33.5 12.5 117 116-237 46-181 (290)
362 PRK08159 enoyl-(acyl carrier p 89.6 9.2 0.0002 33.1 12.3 79 116-199 10-99 (272)
363 PF03269 DUF268: Caenorhabditi 89.5 0.23 5.1E-06 39.3 1.9 50 186-236 61-110 (177)
364 PRK08251 short chain dehydroge 89.5 12 0.00025 31.5 13.1 79 117-198 3-91 (248)
365 PRK07889 enoyl-(acyl carrier p 89.4 5.5 0.00012 34.0 10.7 77 116-199 7-96 (256)
366 PRK08267 short chain dehydroge 89.3 8.7 0.00019 32.7 11.9 75 118-199 3-88 (260)
367 PRK06603 enoyl-(acyl carrier p 89.3 9.8 0.00021 32.6 12.2 78 116-198 8-96 (260)
368 PRK05867 short chain dehydroge 89.3 9 0.00019 32.4 11.9 79 116-199 9-97 (253)
369 PF00106 adh_short: short chai 89.2 9 0.0002 29.9 11.4 79 118-200 2-92 (167)
370 cd08230 glucose_DH Glucose deh 89.1 1.9 4.2E-05 38.8 8.0 98 114-239 171-271 (355)
371 PRK07806 short chain dehydroge 89.0 7.3 0.00016 32.8 11.1 116 116-236 6-133 (248)
372 KOG1209 1-Acyl dihydroxyaceton 89.0 2.2 4.7E-05 35.7 7.2 74 115-197 6-90 (289)
373 KOG2360 Proliferation-associat 88.9 1.3 2.7E-05 40.2 6.3 92 103-198 201-294 (413)
374 PRK08085 gluconate 5-dehydroge 88.8 13 0.00029 31.3 13.1 78 116-198 9-96 (254)
375 COG0287 TyrA Prephenate dehydr 88.8 2.1 4.6E-05 37.5 7.6 109 118-254 5-114 (279)
376 PRK05876 short chain dehydroge 88.8 12 0.00026 32.4 12.5 79 116-199 6-94 (275)
377 PRK12939 short chain dehydroge 88.7 6.7 0.00015 32.9 10.7 78 116-198 7-94 (250)
378 PRK07066 3-hydroxybutyryl-CoA 88.7 5.2 0.00011 35.8 10.2 97 117-234 8-116 (321)
379 PRK07370 enoyl-(acyl carrier p 88.7 6.7 0.00014 33.6 10.7 79 116-198 6-97 (258)
380 KOG1098 Putative SAM-dependent 88.7 0.89 1.9E-05 43.6 5.4 102 113-234 42-155 (780)
381 PRK06194 hypothetical protein; 88.6 9.5 0.00021 33.0 11.8 79 116-199 6-94 (287)
382 PRK10458 DNA cytosine methylas 88.6 3 6.4E-05 39.4 8.9 79 116-202 88-183 (467)
383 PF03446 NAD_binding_2: NAD bi 88.5 1.3 2.8E-05 35.3 5.7 108 119-256 4-116 (163)
384 PRK06128 oxidoreductase; Provi 88.5 11 0.00023 33.1 12.1 116 116-236 55-190 (300)
385 cd08237 ribitol-5-phosphate_DH 88.4 5.5 0.00012 35.7 10.4 96 114-238 162-257 (341)
386 PRK07984 enoyl-(acyl carrier p 88.3 13 0.00028 32.0 12.3 79 116-199 6-95 (262)
387 cd01065 NAD_bind_Shikimate_DH 88.2 11 0.00023 29.4 10.9 118 115-256 18-136 (155)
388 TIGR01202 bchC 2-desacetyl-2-h 88.2 2.2 4.9E-05 37.6 7.6 89 115-239 144-233 (308)
389 PRK07904 short chain dehydroge 88.1 5.1 0.00011 34.2 9.6 81 115-198 7-97 (253)
390 PRK05476 S-adenosyl-L-homocyst 88.0 6.3 0.00014 36.7 10.5 115 115-264 211-326 (425)
391 PRK08324 short chain dehydroge 87.9 5.5 0.00012 39.6 10.8 77 116-198 422-508 (681)
392 PRK13394 3-hydroxybutyrate deh 87.9 13 0.00028 31.5 12.0 78 116-198 7-94 (262)
393 PRK07067 sorbitol dehydrogenas 87.5 15 0.00032 31.2 12.1 75 116-198 6-90 (257)
394 TIGR02822 adh_fam_2 zinc-bindi 87.5 7.7 0.00017 34.6 10.7 94 112-238 162-255 (329)
395 PF03514 GRAS: GRAS domain fam 87.5 16 0.00034 33.5 12.8 122 105-235 101-242 (374)
396 PLN02989 cinnamyl-alcohol dehy 87.4 9.6 0.00021 33.7 11.3 80 116-198 5-87 (325)
397 PF04378 RsmJ: Ribosomal RNA s 87.2 0.4 8.6E-06 41.0 2.1 115 120-256 62-187 (245)
398 TIGR00936 ahcY adenosylhomocys 87.2 5.2 0.00011 37.0 9.4 104 102-240 181-285 (406)
399 PRK07502 cyclohexadienyl dehyd 86.9 5.5 0.00012 35.2 9.3 94 117-237 7-100 (307)
400 PRK03659 glutathione-regulated 86.8 4.3 9.4E-05 39.7 9.3 110 118-256 402-515 (601)
401 PRK06196 oxidoreductase; Provi 86.6 16 0.00034 32.3 12.1 75 116-199 26-110 (315)
402 PRK08177 short chain dehydroge 86.4 12 0.00026 31.0 10.8 71 118-198 3-81 (225)
403 TIGR02853 spore_dpaA dipicolin 86.4 10 0.00022 33.3 10.6 109 115-256 150-259 (287)
404 PRK08643 acetoin reductase; Va 86.3 19 0.00042 30.4 13.4 77 117-198 3-89 (256)
405 KOG1205 Predicted dehydrogenas 86.1 17 0.00037 31.9 11.5 82 116-200 12-103 (282)
406 PRK07814 short chain dehydroge 86.1 5 0.00011 34.3 8.5 78 116-198 10-97 (263)
407 PRK07985 oxidoreductase; Provi 86.0 15 0.00033 32.1 11.6 117 116-237 49-185 (294)
408 PRK15001 SAM-dependent 23S rib 85.8 9.5 0.00021 35.0 10.3 96 117-237 46-142 (378)
409 PLN03154 putative allyl alcoho 85.7 3.8 8.1E-05 37.0 7.7 100 112-238 155-259 (348)
410 PRK10669 putative cation:proto 85.7 4.7 0.0001 39.0 8.8 106 124-256 423-532 (558)
411 PF11899 DUF3419: Protein of u 85.6 2 4.4E-05 39.3 5.9 43 112-160 32-74 (380)
412 PRK05855 short chain dehydroge 85.4 15 0.00032 35.3 12.2 79 116-199 315-403 (582)
413 PRK08306 dipicolinate synthase 85.2 9.4 0.0002 33.7 9.8 91 115-237 151-241 (296)
414 PRK05872 short chain dehydroge 85.2 23 0.00049 31.0 12.3 78 116-199 9-96 (296)
415 TIGR03589 PseB UDP-N-acetylglu 85.2 13 0.00028 33.1 10.9 79 116-199 4-85 (324)
416 KOG0821 Predicted ribosomal RN 85.0 2.5 5.3E-05 35.5 5.5 74 100-181 36-109 (326)
417 TIGR00027 mthyl_TIGR00027 meth 85.0 20 0.00044 30.9 11.6 104 116-235 82-195 (260)
418 TIGR02825 B4_12hDH leukotriene 84.9 7.1 0.00015 34.5 9.1 100 111-238 134-238 (325)
419 PF02153 PDH: Prephenate dehyd 84.9 2.1 4.5E-05 37.0 5.4 98 137-261 5-105 (258)
420 cd08281 liver_ADH_like1 Zinc-d 84.8 7.8 0.00017 35.1 9.5 99 112-239 188-292 (371)
421 PRK09496 trkA potassium transp 84.8 18 0.00039 33.7 12.1 70 116-195 231-304 (453)
422 PF03686 UPF0146: Uncharacteri 84.7 2.5 5.4E-05 32.2 5.0 66 115-197 13-79 (127)
423 cd05292 LDH_2 A subgroup of L- 84.7 23 0.00049 31.5 12.1 113 118-237 2-116 (308)
424 TIGR03451 mycoS_dep_FDH mycoth 84.6 10 0.00022 34.2 10.1 102 112-239 173-278 (358)
425 PRK08217 fabG 3-ketoacyl-(acyl 84.6 6.7 0.00015 33.0 8.4 78 116-198 5-92 (253)
426 PRK06125 short chain dehydroge 84.3 24 0.00053 29.9 12.6 79 116-198 7-91 (259)
427 TIGR00518 alaDH alanine dehydr 84.2 3.1 6.8E-05 38.0 6.5 102 115-237 166-267 (370)
428 PRK09291 short chain dehydroge 84.0 8.4 0.00018 32.6 8.8 77 117-198 3-83 (257)
429 PRK09072 short chain dehydroge 83.9 26 0.00055 29.8 12.5 78 116-199 5-91 (263)
430 PLN02494 adenosylhomocysteinas 83.9 7.3 0.00016 36.7 8.7 105 102-240 240-344 (477)
431 PRK12481 2-deoxy-D-gluconate 3 83.4 23 0.00049 30.0 11.2 76 116-198 8-93 (251)
432 PRK11064 wecC UDP-N-acetyl-D-m 83.2 22 0.00047 33.1 11.7 118 117-251 4-136 (415)
433 PRK07890 short chain dehydroge 83.2 8 0.00017 32.7 8.4 78 116-198 5-92 (258)
434 PRK07097 gluconate 5-dehydroge 83.2 28 0.0006 29.7 13.2 80 115-199 9-98 (265)
435 cd08294 leukotriene_B4_DH_like 83.1 6.1 0.00013 34.8 7.9 96 111-237 139-241 (329)
436 PRK12429 3-hydroxybutyrate deh 83.0 23 0.00049 29.8 11.1 78 116-198 4-91 (258)
437 TIGR00853 pts-lac PTS system, 82.9 3.6 7.9E-05 29.6 5.1 59 117-200 4-62 (95)
438 PRK00066 ldh L-lactate dehydro 82.8 34 0.00075 30.5 12.6 77 115-197 5-82 (315)
439 PRK06139 short chain dehydroge 82.8 7.4 0.00016 34.9 8.2 78 116-198 7-94 (330)
440 cd05293 LDH_1 A subgroup of L- 82.8 35 0.00075 30.4 12.9 116 115-237 2-120 (312)
441 PRK12744 short chain dehydroge 82.7 28 0.00061 29.4 12.4 115 116-235 8-143 (257)
442 COG4121 Uncharacterized conser 82.7 14 0.0003 31.8 9.3 143 115-277 58-242 (252)
443 PF06460 NSP13: Coronavirus NS 82.5 18 0.0004 31.2 9.7 117 113-251 59-185 (299)
444 TIGR01832 kduD 2-deoxy-D-gluco 82.4 27 0.00058 29.3 11.3 77 116-199 5-91 (248)
445 PRK08945 putative oxoacyl-(acy 82.3 7.6 0.00016 32.7 7.9 80 115-198 11-102 (247)
446 COG1086 Predicted nucleoside-d 82.3 8.7 0.00019 36.9 8.6 86 115-202 249-339 (588)
447 TIGR00872 gnd_rel 6-phosphoglu 82.2 7.9 0.00017 34.2 8.1 108 119-254 3-113 (298)
448 PRK03562 glutathione-regulated 82.0 20 0.00044 35.2 11.5 111 117-256 401-515 (621)
449 PRK07417 arogenate dehydrogena 81.7 11 0.00024 32.8 8.8 86 118-233 2-87 (279)
450 PRK08703 short chain dehydroge 81.5 12 0.00027 31.3 8.8 79 116-198 6-97 (239)
451 PRK06182 short chain dehydroge 81.5 28 0.00061 29.8 11.3 73 116-199 3-85 (273)
452 COG0604 Qor NADPH:quinone redu 81.4 11 0.00023 33.8 8.7 102 111-240 138-244 (326)
453 PRK05565 fabG 3-ketoacyl-(acyl 81.4 27 0.00059 29.0 11.0 79 116-199 5-94 (247)
454 COG4353 Uncharacterized conser 81.3 2.6 5.7E-05 33.2 4.0 68 215-282 71-152 (192)
455 PRK07024 short chain dehydroge 81.0 11 0.00025 31.9 8.6 76 117-198 3-88 (257)
456 PTZ00075 Adenosylhomocysteinas 80.9 21 0.00046 33.7 10.6 114 114-262 252-367 (476)
457 cd08239 THR_DH_like L-threonin 80.9 4 8.7E-05 36.4 5.9 100 113-238 161-263 (339)
458 PRK06482 short chain dehydroge 80.8 29 0.00063 29.7 11.2 75 117-199 3-87 (276)
459 PRK08293 3-hydroxybutyryl-CoA 80.8 31 0.00067 30.1 11.3 42 118-163 5-46 (287)
460 PRK07326 short chain dehydroge 80.8 12 0.00026 31.2 8.5 76 116-197 6-91 (237)
461 PRK07454 short chain dehydroge 80.3 17 0.00036 30.5 9.2 78 116-198 6-93 (241)
462 cd08295 double_bond_reductase_ 80.1 7.8 0.00017 34.5 7.5 100 111-237 147-251 (338)
463 PRK07102 short chain dehydroge 80.0 14 0.0003 31.0 8.7 77 117-197 2-85 (243)
464 PF07669 Eco57I: Eco57I restri 80.0 2.9 6.2E-05 30.8 3.8 47 188-236 2-50 (106)
465 PRK08340 glucose-1-dehydrogena 79.7 13 0.00029 31.5 8.6 75 118-198 2-86 (259)
466 PRK08339 short chain dehydroge 79.6 38 0.00083 28.9 12.4 79 116-198 8-95 (263)
467 PRK05854 short chain dehydroge 79.6 16 0.00034 32.3 9.2 81 116-199 14-104 (313)
468 PF12692 Methyltransf_17: S-ad 79.4 8.1 0.00018 30.3 6.1 49 98-152 13-61 (160)
469 cd08293 PTGR2 Prostaglandin re 79.3 6 0.00013 35.2 6.5 91 117-237 156-254 (345)
470 KOG1252 Cystathionine beta-syn 79.2 5.7 0.00012 35.5 5.9 68 82-156 185-252 (362)
471 PRK06997 enoyl-(acyl carrier p 79.1 30 0.00065 29.5 10.6 78 116-198 6-94 (260)
472 PRK07791 short chain dehydroge 78.9 43 0.00093 29.1 12.2 79 115-198 5-102 (286)
473 PRK08278 short chain dehydroge 78.7 42 0.0009 28.8 11.9 79 116-199 6-101 (273)
474 PRK07666 fabG 3-ketoacyl-(acyl 78.4 19 0.00041 30.0 9.0 78 116-198 7-94 (239)
475 TIGR03366 HpnZ_proposed putati 78.3 5.8 0.00012 34.4 5.9 97 114-238 119-219 (280)
476 PRK06172 short chain dehydroge 78.3 18 0.00039 30.5 8.9 78 116-198 7-94 (253)
477 PLN02586 probable cinnamyl alc 78.0 12 0.00026 33.9 8.0 97 114-238 182-279 (360)
478 PRK07478 short chain dehydroge 77.9 20 0.00043 30.3 9.0 78 116-198 6-93 (254)
479 PRK05884 short chain dehydroge 77.6 30 0.00064 28.8 9.9 70 118-197 2-78 (223)
480 PRK05693 short chain dehydroge 77.4 43 0.00092 28.7 11.1 71 118-199 3-83 (274)
481 PLN02740 Alcohol dehydrogenase 77.3 16 0.00036 33.2 8.9 99 112-239 195-302 (381)
482 PRK07831 short chain dehydroge 77.3 16 0.00036 31.0 8.4 81 115-198 16-107 (262)
483 cd08234 threonine_DH_like L-th 77.3 19 0.00042 31.7 9.1 97 112-237 156-257 (334)
484 PTZ00142 6-phosphogluconate de 77.2 20 0.00043 34.0 9.4 110 125-254 8-121 (470)
485 PRK06949 short chain dehydroge 77.0 21 0.00046 30.1 9.0 78 116-198 9-96 (258)
486 KOG1371 UDP-glucose 4-epimeras 77.0 9.8 0.00021 33.9 6.7 79 117-198 3-87 (343)
487 PRK08862 short chain dehydroge 77.0 43 0.00092 28.0 12.1 77 116-197 5-92 (227)
488 PRK12384 sorbitol-6-phosphate 76.9 21 0.00045 30.2 9.0 79 117-198 3-91 (259)
489 PRK10309 galactitol-1-phosphat 76.8 12 0.00026 33.5 7.7 98 113-239 158-262 (347)
490 cd05291 HicDH_like L-2-hydroxy 76.8 53 0.0012 29.0 11.8 74 118-197 2-77 (306)
491 PRK08993 2-deoxy-D-gluconate 3 76.8 45 0.00097 28.2 11.9 76 116-198 10-95 (253)
492 PF02086 MethyltransfD12: D12 76.7 5.3 0.00011 34.2 5.2 56 102-164 8-63 (260)
493 PRK12823 benD 1,6-dihydroxycyc 76.7 45 0.00098 28.1 12.4 76 116-197 8-93 (260)
494 COG2933 Predicted SAM-dependen 76.6 25 0.00055 30.5 8.8 71 113-197 209-279 (358)
495 PF06557 DUF1122: Protein of u 76.6 12 0.00026 29.8 6.4 64 216-279 65-142 (170)
496 PRK06101 short chain dehydroge 76.5 44 0.00095 27.9 11.4 71 118-197 3-80 (240)
497 COG0677 WecC UDP-N-acetyl-D-ma 76.5 15 0.00033 33.7 8.0 40 117-160 10-49 (436)
498 PRK06935 2-deoxy-D-gluconate 3 76.3 46 0.001 28.1 12.0 77 116-198 15-101 (258)
499 PRK07453 protochlorophyllide o 76.3 15 0.00033 32.5 8.1 78 116-198 6-93 (322)
500 PRK06114 short chain dehydroge 76.1 47 0.001 28.0 12.5 78 116-198 8-96 (254)
No 1
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.94 E-value=1.5e-24 Score=190.13 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCcc--------
Q 022698 26 WQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVP-------- 97 (293)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~-------- 97 (293)
+...+.+|+.+.+......+++....+++....+.+...+.|+..++| ++|+.+...|++..+.
T Consensus 23 ~~~~a~~ll~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p--------l~yi~g~~~f~g~~f~v~~~vliP 94 (284)
T TIGR00536 23 PWLEALLLLLHDLGRERDLLLAFLTEELTPDEKERIFRLVLRRVKGVP--------VAYLLGSKEFYGLEFFVNEHVLIP 94 (284)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCC--------HHHHhCcceEcCeEEEECCCCcCC
Confidence 344566666666666677777777778888777888899999999999 9999999999876543
Q ss_pred --chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 98 --LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 98 --~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
..+.+++.++..+....+..+|||+|||+|+++..++...+ +.+++++|+|+.+++.|++|++.++..+++.++
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~ 170 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQLEHRVEFI 170 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 33556666665543223336899999999999999998865 469999999999999999999998886679999
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhcc----------ccCcch---hhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCc
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGK----------EYGHRT---VEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHV 241 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~~----------~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~ 241 (293)
++|+.+ +++..+||+|++||||..... +|..+. .........+++++.+.|+|||++++ ++..+.
T Consensus 171 ~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 171 QSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred ECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 999876 344458999999999864431 111111 11123566789999999999999988 666777
Q ss_pred hHHHHHHH-HcCCcceEEeeeeccceecceeeeeecC
Q 022698 242 PEYVRRLQ-ELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 242 ~~~~~~l~-~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
..+.+++. +.||..+++.+|+.+.+ |++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~D~~g~~---R~~~~~~~ 283 (284)
T TIGR00536 250 KSLKELLRIKFTWYDVENGRDLNGKE---RVVLGFYH 283 (284)
T ss_pred HHHHHHHHhcCCCceeEEecCCCCCc---eEEEEEec
Confidence 78888888 47999999999999988 88887654
No 2
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.93 E-value=7.2e-25 Score=197.07 Aligned_cols=229 Identities=13% Similarity=0.052 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccch---------
Q 022698 29 LIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLH--------- 99 (293)
Q Consensus 29 ~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~--------- 99 (293)
.+.+|+.+.+......+++....+++....+.+++.+.|+..++| ++|+.+..+||+..+.+.
T Consensus 166 dA~~LL~~~l~~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~geP--------lqYIlG~~~F~G~~f~V~p~vLIPRpe 237 (423)
T PRK14966 166 EARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEP--------VAYILGVREFYGRRFAVNPNVLIPRPE 237 (423)
T ss_pred HHHHHHHHHHCcCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCC--------ceeEeeeeeecCcEEEeCCCccCCCcc
Confidence 356666666666677788877788888888889999999999999 999999999998766543
Q ss_pred -HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 100 -YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 100 -~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
+.+++.++..+ .++.+|||+|||+|++++.+++..+ ..+++++|+|+.|++.+++|++.++. ++.++++|
T Consensus 238 TE~LVe~aL~~l---~~~~rVLDLGcGSG~IaiaLA~~~p----~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gD 308 (423)
T PRK14966 238 TEHLVEAVLARL---PENGRVWDLGTGSGAVAVTVALERP----DAFVRASDISPPALETARKNAADLGA--RVEFAHGS 308 (423)
T ss_pred HHHHHHHhhhcc---CCCCEEEEEeChhhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcc
Confidence 34555554443 3456899999999999999987765 46999999999999999999988764 59999999
Q ss_pred CCCCCC-CCCcccEEEecchhhhhcc----------ccCcchh---hhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchH
Q 022698 179 VRSLPF-GDNYFDVVVSAAFFHTVGK----------EYGHRTV---EAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPE 243 (293)
Q Consensus 179 ~~~~~~-~~~~fD~Iv~~~~~~~~~~----------~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~ 243 (293)
+.+... ..++||+|+|||||..... ||..+.+ ...+....+++.+.+.|+|||.+++ ++..+.+.
T Consensus 309 l~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~ 388 (423)
T PRK14966 309 WFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAA 388 (423)
T ss_pred hhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHH
Confidence 876432 2457999999999854321 1111111 1112345677778899999999877 67778889
Q ss_pred HHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 244 YVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+.+++++.||..+++.+|+.+.+ |++.++++
T Consensus 389 V~~ll~~~Gf~~v~v~kDl~G~d---R~v~~~~~ 419 (423)
T PRK14966 389 VRGVLAENGFSGVETLPDLAGLD---RVTLGKYM 419 (423)
T ss_pred HHHHHHHCCCcEEEEEEcCCCCc---EEEEEEEh
Confidence 99999999999999999999988 99988765
No 3
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.93 E-value=4.9e-24 Score=199.85 Aligned_cols=234 Identities=10% Similarity=0.051 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccch------
Q 022698 26 WQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLH------ 99 (293)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~------ 99 (293)
....+.+|+.+.+......+++....+++....+.+...+.|+..++| ++|+.+..+||+..+.+.
T Consensus 24 ~~~~a~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~eP--------lqYI~G~~~F~g~~f~V~~~VLIP 95 (506)
T PRK01544 24 PQLEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEP--------IAYITGVKEFYSREFIVNKHVLIP 95 (506)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCC--------HHHHhCcCEEcCcEEEeCCCcccC
Confidence 344466666666665677777777778888777889999999999999 999999999998876544
Q ss_pred ----HHHHHHHHHhcCC-----------------------CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC
Q 022698 100 ----YDMAQRMVGSVND-----------------------WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK 152 (293)
Q Consensus 100 ----~~~~~~l~~~~~~-----------------------~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis 152 (293)
+.+++++++.+.. ..+..+|||+|||+|++++.++..++ +++++++|+|
T Consensus 96 RpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p----~~~v~avDis 171 (506)
T PRK01544 96 RSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELP----NANVIATDIS 171 (506)
T ss_pred CCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCC----CCeEEEEECC
Confidence 5677777655421 11345899999999999999988766 4699999999
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhcc-----------ccCcchhh---hHHHHHH
Q 022698 153 KRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGK-----------EYGHRTVE---AAAERMR 218 (293)
Q Consensus 153 ~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~-----------~~~~~~~~---~~~~~~~ 218 (293)
+.+++.|++|+..+++.+++.++.+|+.+. .+.++||+|+|||||..... ++..+.+. ..+....
T Consensus 172 ~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ 250 (506)
T PRK01544 172 LDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFI 250 (506)
T ss_pred HHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHH
Confidence 999999999999888877899999998652 34568999999999875432 12111111 1224556
Q ss_pred HHHHHHHcccCCcEEEE-EcCCCchHHHHHHHHcCCcceEEeeeeccceecceeeeee
Q 022698 219 VLGEMVRVLKPGGVGVV-WDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 219 ~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
+++.+.++|+|||.+++ ++..+.+.+.+++.+.||..+++.+|+.+.+ |++.+.
T Consensus 251 il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~---R~v~~~ 305 (506)
T PRK01544 251 IAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQGHS---RVILIS 305 (506)
T ss_pred HHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEecCCCCc---eEEEec
Confidence 78888999999999987 6677788899999999999999999999987 777655
No 4
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.9e-23 Score=179.89 Aligned_cols=217 Identities=18% Similarity=0.153 Sum_probs=167.5
Q ss_pred HHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccch----------HHHHHHHHHhc
Q 022698 41 ISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLH----------YDMAQRMVGSV 110 (293)
Q Consensus 41 ~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~----------~~~~~~l~~~~ 110 (293)
..+.+.......++....+.+.+...|+..++| ++|+.+...|+...+.+. +.+++.++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~P--------~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~ 107 (280)
T COG2890 36 PRDQLLAHPEAELSEEELERLRELLERRAEGEP--------VAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALL 107 (280)
T ss_pred CHHHHhhccccccCHHHHHHHHHHHHHHHCCCC--------HhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhh
Confidence 455666666667777777888888888899999 999999999987776544 34555554333
Q ss_pred CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCccc
Q 022698 111 NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFD 190 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 190 (293)
.. ... +|||+|||||++++.++...+ .++|+|+|+|+.|++.|++|+..+++ .++.++.+|+.+ +. .++||
T Consensus 108 ~~-~~~-~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~-~~~fD 178 (280)
T COG2890 108 LQ-LDK-RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PL-RGKFD 178 (280)
T ss_pred hh-cCC-cEEEecCChHHHHHHHHhhCc----CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc-cc-CCcee
Confidence 22 222 799999999999999999877 46999999999999999999999998 567777778776 23 34899
Q ss_pred EEEecchhhhhc----------cccCcchh---hhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHHHHHHHHcC-Ccc
Q 022698 191 VVVSAAFFHTVG----------KEYGHRTV---EAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEYVRRLQELK-MED 255 (293)
Q Consensus 191 ~Iv~~~~~~~~~----------~~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~l~~~g-f~~ 255 (293)
+|||||||.... .||..+.. ...+....++.++.+.|+|||.+++ ++..+.+.+.+++.+.| |..
T Consensus 179 lIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 179 LIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEI 258 (280)
T ss_pred EEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceE
Confidence 999999997665 12211111 1122455688888899999999888 77788999999999999 788
Q ss_pred eEEeeeeccceecceeeeeecC
Q 022698 256 IRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+.+.+++.+.. |++.+++.
T Consensus 259 v~~~~d~~g~~---rv~~~~~~ 277 (280)
T COG2890 259 VETLKDLFGRD---RVVLAKLR 277 (280)
T ss_pred EEEEecCCCce---EEEEEEec
Confidence 88999999977 77777654
No 5
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.90 E-value=4.9e-22 Score=173.92 Aligned_cols=225 Identities=15% Similarity=0.063 Sum_probs=164.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhh-cccccccchhhhhhHhhhcccccccCccch-----
Q 022698 26 WQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFA-AGFSGAVLALSSVCLFFAAGNFFYSAVPLH----- 99 (293)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~----- 99 (293)
+...+.+|+.+.+....+.+++....+++....+.+..++.|+. .++| ++|+.+...|++..+.+.
T Consensus 29 ~~~~a~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~P--------l~yi~g~~~f~g~~f~v~~~vli 100 (284)
T TIGR03533 29 AWDEAVYLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIP--------VAYLTNEAWFAGLEFYVDERVLI 100 (284)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHhCCCc--------HHHHcCCCeecCcEEEECCCCcc
Confidence 34456667777766667777777777888777788888899997 7999 999999999987654433
Q ss_pred -----HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 100 -----YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 100 -----~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+.++...+.......++.+|||+|||+|+++..+++..+ +.+++++|+|+.+++.|++|++.+++.+++.+
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~~~~~i~~ 176 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDRVTL 176 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 345554444221123456899999999999999998765 46999999999999999999999988778999
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhcc----------ccCcch---hhhHHHHHHHHHHHHHcccCCcEEEE-EcCCC
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGK----------EYGHRT---VEAAAERMRVLGEMVRVLKPGGVGVV-WDLLH 240 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~----------~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~ 240 (293)
+++|+.+. ++.++||+|++||||..... ++..+. .........+++.+.++|+|||++++ ++. .
T Consensus 177 ~~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~ 254 (284)
T TIGR03533 177 IQSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-S 254 (284)
T ss_pred EECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-C
Confidence 99998652 34568999999999864321 111000 01112346788999999999999988 443 3
Q ss_pred chHHHHHHHHcCCcceEEeeeecc
Q 022698 241 VPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 241 ~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
.+.+.+.+.+.||.-......-.+
T Consensus 255 ~~~v~~~~~~~~~~~~~~~~~~~~ 278 (284)
T TIGR03533 255 MEALEEAYPDVPFTWLEFENGGDG 278 (284)
T ss_pred HHHHHHHHHhCCCceeeecCCCcE
Confidence 468888899989876544443333
No 6
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.90 E-value=8.1e-22 Score=172.42 Aligned_cols=228 Identities=19% Similarity=0.149 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCccch----------
Q 022698 30 IFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVPLH---------- 99 (293)
Q Consensus 30 ~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~---------- 99 (293)
+.+++.+.+....+.+++....+++....+.+.+.+.|+..++| ++|+.+...||...+.+.
T Consensus 22 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------~~~i~g~~~f~~~~~~~~~~~lipr~~t 93 (275)
T PRK09328 22 AELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEP--------LQYILGEAEFWGLDFKVSPGVLIPRPET 93 (275)
T ss_pred HHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCC--------HHHHceeceEcCcEEEECCCceeCCCCc
Confidence 44445555444455566655566665555778888889999999 999999999887654333
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.+.+.++.... ..++.+|||+|||+|.++..++...+ ..+++++|+|+.+++.+++|+. .....++.++.+|+
T Consensus 94 e~l~~~~~~~~~-~~~~~~vLDiG~GsG~~~~~la~~~~----~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~ 167 (275)
T PRK09328 94 EELVEWALEALL-LKEPLRVLDLGTGSGAIALALAKERP----DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW 167 (275)
T ss_pred HHHHHHHHHhcc-ccCCCEEEEEcCcHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence 456666654432 34567999999999999999998875 4699999999999999999988 33345699999998
Q ss_pred CCCCCCCCcccEEEecchhhhhcc-----------ccCcc---hhhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHH
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGK-----------EYGHR---TVEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEY 244 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~-----------~~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~ 244 (293)
.+. ...++||+|++||||..... ++..+ +....+....+++++.++|+|||.+++ ++..+.+++
T Consensus 168 ~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~ 246 (275)
T PRK09328 168 FEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAV 246 (275)
T ss_pred cCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHH
Confidence 663 33578999999999864321 11111 111223556788999999999999988 455566789
Q ss_pred HHHHHHcCCcceEEeeeeccceecceeeeee
Q 022698 245 VRRLQELKMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
.+++.+.||..+++..|+.+.. |++.++
T Consensus 247 ~~~l~~~gf~~v~~~~d~~~~~---r~~~~~ 274 (275)
T PRK09328 247 RALLAAAGFADVETRKDLAGRD---RVVLGR 274 (275)
T ss_pred HHHHHhCCCceeEEecCCCCCc---eEEEEE
Confidence 9999999999999988998877 877764
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.89 E-value=1.2e-21 Score=164.68 Aligned_cols=123 Identities=33% Similarity=0.458 Sum_probs=107.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
.+...-+.+++.+.. .++.+|||+|||||.++..+++..+ .++|+++|+|+.|++.+++.+...+..+ ++|+.+
T Consensus 35 ~~~~Wr~~~i~~~~~-~~g~~vLDva~GTGd~a~~~~k~~g----~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~ 108 (238)
T COG2226 35 LHRLWRRALISLLGI-KPGDKVLDVACGTGDMALLLAKSVG----TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVG 108 (238)
T ss_pred chHHHHHHHHHhhCC-CCCCEEEEecCCccHHHHHHHHhcC----CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEe
Confidence 334445556665543 3788999999999999999998876 4699999999999999999999888766 999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+.++|+++++||+|.+...++.++ +...+|++++|+|||||++++.+.
T Consensus 109 dAe~LPf~D~sFD~vt~~fglrnv~------------d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 109 DAENLPFPDNSFDAVTISFGLRNVT------------DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred chhhCCCCCCccCEEEeeehhhcCC------------CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 9999999999999999999999999 999999999999999999998653
No 8
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.89 E-value=2.6e-21 Score=170.84 Aligned_cols=222 Identities=14% Similarity=0.033 Sum_probs=160.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhh-cccccccchhhhhhHhhhcccccccCccch-----
Q 022698 26 WQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFA-AGFSGAVLALSSVCLFFAAGNFFYSAVPLH----- 99 (293)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~----- 99 (293)
....+.+|+.+.+....+.+++....+++....+.+.+.+.|+. .++| ++|+.+...|++..+.+.
T Consensus 41 ~~~~a~~ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~~~P--------l~yi~g~~~F~g~~f~v~~~vli 112 (307)
T PRK11805 41 AWDEAVQLVLHALHLPLDIPEPFLDARLTPSEKARILELIERRINERIP--------AAYLTNEAWFCGLEFYVDERVLV 112 (307)
T ss_pred HHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHHCCcc--------HHHHcCcceEcCcEEEECCCCcC
Confidence 34456677777766667777777777887777778889999997 6999 999999999987655433
Q ss_pred -----HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 100 -----YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 100 -----~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+.++...+.......+..+|||+|||+|+++..++...+ ..+++++|+|+.+++.|++|++.+++.+++.+
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p----~~~V~avDis~~al~~A~~n~~~~~l~~~i~~ 188 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHGLEDRVTL 188 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 344444443221112236899999999999999998765 46999999999999999999999888778999
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhcc----------ccCcchh---hhHHHHHHHHHHHHHcccCCcEEEEEcCCCc
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGK----------EYGHRTV---EAAAERMRVLGEMVRVLKPGGVGVVWDLLHV 241 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~----------~~~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 241 (293)
+++|+.+. ++.++||+|++||||..... ++..+.+ ...+....+++++.+.|+|||.+++--....
T Consensus 189 ~~~D~~~~-l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~ 267 (307)
T PRK11805 189 IESDLFAA-LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR 267 (307)
T ss_pred EECchhhh-CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 99998652 34568999999999854221 1211111 1112456788999999999999988322234
Q ss_pred hHHHHHHHHcCCcceEEee
Q 022698 242 PEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~~ 260 (293)
..+.+.+.+.||.-.....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~ 286 (307)
T PRK11805 268 VHLEEAYPDVPFTWLEFEN 286 (307)
T ss_pred HHHHHHHhhCCCEEEEecC
Confidence 4577777777776554433
No 9
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.87 E-value=1.9e-20 Score=161.50 Aligned_cols=209 Identities=17% Similarity=0.149 Sum_probs=154.4
Q ss_pred HHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccCcc----------chHHHHHHHHHhcC
Q 022698 42 SSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVP----------LHYDMAQRMVGSVN 111 (293)
Q Consensus 42 ~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~----------~~~~~~~~l~~~~~ 111 (293)
.+.+......+++......+.....++..+.| ++++.+...|+...+. ....+.+.+++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~~~~ 85 (251)
T TIGR03534 14 RTDLLLHPEKELTPEELARFEALLARRAKGEP--------VAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALERLK 85 (251)
T ss_pred HHHHhhcccCCCCHHHHHHHHHHHHHHHcCCC--------HHHHcccceEeceEEEECCCcccCCCChHHHHHHHHHhcc
Confidence 33334444455655555667778888888888 8888887777765443 33456666666653
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
..+.+|||+|||+|.++..++...+ ..+++++|+|+.+++.+++++..++.. ++.+.++|+.+ +++.++||+
T Consensus 86 --~~~~~ilDig~G~G~~~~~l~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~~~fD~ 157 (251)
T TIGR03534 86 --KGPLRVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PLPGGKFDL 157 (251)
T ss_pred --cCCCeEEEEeCcHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cCcCCceeE
Confidence 2346899999999999999998765 469999999999999999999988774 69999999977 345678999
Q ss_pred EEecchhhhhccccCcc--------------hhhhHHHHHHHHHHHHHcccCCcEEEEE-cCCCchHHHHHHHHcCCcce
Q 022698 192 VVSAAFFHTVGKEYGHR--------------TVEAAAERMRVLGEMVRVLKPGGVGVVW-DLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~l~~~gf~~~ 256 (293)
|++|+||.......... +.........+++++.++|+|||.+++. ...+..++.+.+++.||+.+
T Consensus 158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 99999987533110000 0011123457889999999999999884 44566778999999999999
Q ss_pred EEeeeeccce
Q 022698 257 RVSERVTAFM 266 (293)
Q Consensus 257 ~~~~~~~~~~ 266 (293)
++..++.+..
T Consensus 238 ~~~~d~~~~~ 247 (251)
T TIGR03534 238 ETRKDLAGKD 247 (251)
T ss_pred EEEeCCCCCc
Confidence 9998887755
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.86 E-value=1.2e-21 Score=166.26 Aligned_cols=116 Identities=33% Similarity=0.516 Sum_probs=87.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.+. ..++.+|||+|||+|..+..+++..+. ..+|+++|+|+.|++.|+++....+.. +++++++|+.++|+
T Consensus 38 ~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~---~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 38 KLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGP---NGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF 112 (233)
T ss_dssp HHHHHHT---S--EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred HHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCC---ccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC
Confidence 3444432 456789999999999999988876543 469999999999999999999887754 79999999999999
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++++||+|++...++.++ |+...+++++|+|||||++++.+
T Consensus 113 ~d~sfD~v~~~fglrn~~------------d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFP------------DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp -TT-EEEEEEES-GGG-S------------SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceeEEEHHhhHHhhC------------CHHHHHHHHHHHcCCCeEEEEee
Confidence 999999999999999988 88999999999999999999855
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.85 E-value=6.4e-20 Score=158.89 Aligned_cols=138 Identities=25% Similarity=0.361 Sum_probs=111.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh--cCCCCceEEEEcCCCCCCCCCCcc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM--EGVQEYVTAREGDVRSLPFGDNYF 189 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~f 189 (293)
...++.+|||+|||+|.++..+++..+. ..+|+|+|+|++|++.|+++... ....++++++++|+.++|+++++|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~---~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGS---DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence 3456789999999999999888776532 35999999999999999877542 222346999999999999888999
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------------------------
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------------ 239 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------------ 239 (293)
|+|+++..+++++ ++..+++++.|+|||||.+++.+..
T Consensus 147 D~V~~~~~l~~~~------------d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (261)
T PLN02233 147 DAITMGYGLRNVV------------DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAK 214 (261)
T ss_pred eEEEEecccccCC------------CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChH
Confidence 9999999999988 8899999999999999999886532
Q ss_pred -------------CchHHHHHHHHcCCcceEEeeeecc
Q 022698 240 -------------HVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 240 -------------~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
...++.++++++||+.++......+
T Consensus 215 ~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g 252 (261)
T PLN02233 215 EYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGG 252 (261)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCC
Confidence 2235678889999998876654334
No 12
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.85 E-value=1.3e-19 Score=155.92 Aligned_cols=188 Identities=18% Similarity=0.125 Sum_probs=136.3
Q ss_pred hhhHHHHHHhhcccccccchhhhhhHhhhcccccccCcc----------chHHHHHHHHHhcCCCCCCCeEEEEcCCCCh
Q 022698 59 SYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSAVP----------LHYDMAQRMVGSVNDWSTVKTALDIGCGRGI 128 (293)
Q Consensus 59 ~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~~~----------~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~ 128 (293)
..++.+++|+..++| ++|+.+...|++..+. ..+.+++.++..+....+..+|||+|||+|.
T Consensus 28 ~~~~~~~~rr~~~~P--------l~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~ 99 (251)
T TIGR03704 28 GELAAMVDRRVAGLP--------LEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGA 99 (251)
T ss_pred HHHHHHHHHHHcCCC--------HHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHH
Confidence 457788999999999 9999999999765332 3345666665544322334589999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC--CCCcccEEEecchhhhhcc---
Q 022698 129 LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF--GDNYFDVVVSAAFFHTVGK--- 203 (293)
Q Consensus 129 ~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~Iv~~~~~~~~~~--- 203 (293)
++..+++..+ +.+++++|+|+.+++.+++|++.++ ++++++|+.+... ..++||+|++||||.....
T Consensus 100 i~l~la~~~~----~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~ 171 (251)
T TIGR03704 100 VGAALAAALD----GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIAL 171 (251)
T ss_pred HHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhc
Confidence 9999988765 4689999999999999999998875 4688899876311 1357999999999864321
Q ss_pred --------ccCcch---hhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHHHHHHHHcCCcceEE-eeee
Q 022698 204 --------EYGHRT---VEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEYVRRLQELKMEDIRV-SERV 262 (293)
Q Consensus 204 --------~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~l~~~gf~~~~~-~~~~ 262 (293)
++..+. ....+....+++.+.++|+|||++++ +...+.+++.+.|++.||...-. ++|+
T Consensus 172 ~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 172 MPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 100000 01112345788888899999999887 55667788999999999885443 3344
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.83 E-value=2.3e-19 Score=161.18 Aligned_cols=142 Identities=23% Similarity=0.343 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCC----CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 101 DMAQRMVGSVND----WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 101 ~~~~~l~~~~~~----~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
.+.+.+++.+.- ..++.+|||||||+|..+..+++.+ +++|+|+|+|+.+++.++++++..+..+++.+.+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-----g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~ 174 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-----GANVKGITLSPVQAARANALAAAQGLSDKVSFQV 174 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 345555555431 1456799999999999999988764 3599999999999999999998888777899999
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------- 239 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------- 239 (293)
+|+.++++++++||+|+++..++|++ +...+++++.++|||||.+++++..
T Consensus 175 ~D~~~~~~~~~~FD~V~s~~~~~h~~------------d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~ 242 (340)
T PLN02244 175 ADALNQPFEDGQFDLVWSMESGEHMP------------DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQK 242 (340)
T ss_pred cCcccCCCCCCCccEEEECCchhccC------------CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHH
Confidence 99999888889999999999999998 8889999999999999999885421
Q ss_pred ---------------CchHHHHHHHHcCCcceEEe
Q 022698 240 ---------------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 ---------------~~~~~~~~l~~~gf~~~~~~ 259 (293)
..+++.++++++||..+++.
T Consensus 243 ~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 243 LLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 23478888999999998765
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.82 E-value=1.2e-18 Score=148.61 Aligned_cols=145 Identities=30% Similarity=0.401 Sum_probs=118.1
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.++..+. ..++.+|||+|||+|..+..+++..+. +.+++++|+|+.+++.++++.+..+. ++++++.+|+.+++
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGP---EGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP 109 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC
Confidence 44555443 456789999999999999988877532 45999999999999999999887765 56999999998877
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-----------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----------------------- 240 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 240 (293)
+++++||+|+++.++++.+ ++..+++++.++|+|||.+++.+...
T Consensus 110 ~~~~~fD~V~~~~~l~~~~------------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 177 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVP------------DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGK 177 (231)
T ss_pred CCCCCccEEEEecccccCC------------CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhH
Confidence 7778999999999988887 77899999999999999998864321
Q ss_pred ---------------------chHHHHHHHHcCCcceEEeeeeccc
Q 022698 241 ---------------------VPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 241 ---------------------~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
.+++.++++++||+.++++....|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~ 223 (231)
T TIGR02752 178 LFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGV 223 (231)
T ss_pred HhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccce
Confidence 1456789999999999877655453
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.81 E-value=7.3e-19 Score=165.19 Aligned_cols=156 Identities=22% Similarity=0.287 Sum_probs=124.8
Q ss_pred hhhcccccccCccchHH--HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 85 FFAAGNFFYSAVPLHYD--MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 85 ~~~~~~f~~~~~~~~~~--~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
+.+...||...+.+... ..+.+++.+. ..++.+|||||||+|.++..+++.. +++++|+|+|+.+++.|+++
T Consensus 235 i~~~~~f~g~~~~v~~~v~~te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvDiS~~~l~~A~~~ 308 (475)
T PLN02336 235 ILRYERVFGEGFVSTGGLETTKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-----DVHVVGIDLSVNMISFALER 308 (475)
T ss_pred HHHHHHHhCCCCCCCchHHHHHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHH
Confidence 77777777666554433 3455666654 4567799999999999998888764 35999999999999999988
Q ss_pred HHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---
Q 022698 163 AKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--- 239 (293)
Q Consensus 163 ~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--- 239 (293)
+... ..++.|..+|+.+.++++++||+|+|..+++|++ ++..++++++++|||||.+++.+..
T Consensus 309 ~~~~--~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~ 374 (475)
T PLN02336 309 AIGR--KCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ------------DKPALFRSFFKWLKPGGKVLISDYCRSP 374 (475)
T ss_pred hhcC--CCceEEEEcCcccCCCCCCCEEEEEECCcccccC------------CHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 7533 3569999999988777778999999999999998 8899999999999999999985421
Q ss_pred -------------------CchHHHHHHHHcCCcceEEee
Q 022698 240 -------------------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -------------------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.++++++||+.+.+..
T Consensus 375 ~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 375 GTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred CCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 234678899999999886654
No 16
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.80 E-value=3e-18 Score=143.22 Aligned_cols=212 Identities=13% Similarity=0.125 Sum_probs=152.6
Q ss_pred cccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcccccccC----------ccchHHHHHHHHHhcCC--CCCCC
Q 022698 50 FEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFFYSA----------VPLHYDMAQRMVGSVND--WSTVK 117 (293)
Q Consensus 50 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~~~~----------~~~~~~~~~~l~~~~~~--~~~~~ 117 (293)
.+|+....-+.+.....++....| +||+.+...|-+.. .+..++.++++++.+.+ ...+.
T Consensus 79 ~~pl~~~ql~~i~~~~~~R~~r~P--------lQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~ 150 (328)
T KOG2904|consen 79 DDPLVILQLESIRWACLQRYKRMP--------LQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHT 150 (328)
T ss_pred ccccchhHHHHHHHHHHHHHhcCC--------hhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccc
Confidence 456666666667766677777999 99999999986543 44667899999887754 22345
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-----CCCCCCcccEE
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-----LPFGDNYFDVV 192 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~I 192 (293)
.|||+|||+|++++.++..++ .++++|+|.|+.|+..|.+|+.++++.+++.++..++.. .+...++.|++
T Consensus 151 ~ildlgtGSGaIslsll~~L~----~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLP----QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred eEEEecCCccHHHHHHHhcCC----CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 799999999999999999988 479999999999999999999999999999998665543 12346899999
Q ss_pred EecchhhhhccccCcchhh--------------hHHHHHHHHHHHHHcccCCcEEEEEcC--CCchHHHHHH----HHcC
Q 022698 193 VSAAFFHTVGKEYGHRTVE--------------AAAERMRVLGEMVRVLKPGGVGVVWDL--LHVPEYVRRL----QELK 252 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~l----~~~g 252 (293)
+|||||..-.+...+++.+ .-+....++.-+.|+|+|||.+.+--. ...+.....+ .+--
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~ 306 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDS 306 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhc
Confidence 9999996554322111111 111334466667799999999988322 3334333332 3344
Q ss_pred CcceEEeeeeccceecceeeeeec
Q 022698 253 MEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 253 f~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
+..+.+..|+.+.+ |++..++
T Consensus 307 ~~~~~v~~Df~~~~---Rfv~i~r 327 (328)
T KOG2904|consen 307 NGKAAVVSDFAGRP---RFVIIHR 327 (328)
T ss_pred cchhheeecccCCc---ceEEEEe
Confidence 66777888888866 7776654
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=6.2e-18 Score=146.29 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=110.8
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+. .++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.|+++....+..++++++++|+.+++
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 34555553 34579999999999999888875 35999999999999999999988887778999999998763
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------------
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------ 238 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------ 238 (293)
..+++||+|+++.++++++ ++..+++++.++|||||.+++...
T Consensus 107 ~~~~~~fD~V~~~~vl~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~ 174 (255)
T PRK11036 107 QHLETPVDLILFHAVLEWVA------------DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPK 174 (255)
T ss_pred hhcCCCCCEEEehhHHHhhC------------CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCcc
Confidence 4467899999999999988 788999999999999999976321
Q ss_pred -----------CCchHHHHHHHHcCCcceEE
Q 022698 239 -----------LHVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 239 -----------~~~~~~~~~l~~~gf~~~~~ 258 (293)
...+++.++++++||+.+..
T Consensus 175 ~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~ 205 (255)
T PRK11036 175 RKKRTLSPDYPLDPEQVYQWLEEAGWQIMGK 205 (255)
T ss_pred ccccCCCCCCCCCHHHHHHHHHHCCCeEeee
Confidence 11256888889999987654
No 18
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.79 E-value=7.2e-18 Score=146.24 Aligned_cols=140 Identities=16% Similarity=0.295 Sum_probs=114.2
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
....+++.+ .+.++.+|||||||+|..+..+++.. +++|+++|+|+.+++.++++... .+++.+...|+.+
T Consensus 40 ~~~~~l~~l-~l~~~~~VLDiGcG~G~~a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~ 110 (263)
T PTZ00098 40 ATTKILSDI-ELNENSKVLDIGSGLGGGCKYINEKY-----GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILK 110 (263)
T ss_pred HHHHHHHhC-CCCCCCEEEEEcCCCChhhHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCccc
Confidence 456666665 35678899999999999998887543 36999999999999999987654 2469999999988
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
.++++++||+|+++..++|.+ ..++..++++++++|||||.+++.+..
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~----------~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~ 180 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLS----------YADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTL 180 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCC----------HHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCC
Confidence 777788999999988887765 337889999999999999999986531
Q ss_pred -CchHHHHHHHHcCCcceEEee
Q 022698 240 -HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.++++++||+.++...
T Consensus 181 ~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 181 IPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred CCHHHHHHHHHHCCCCeeeEEe
Confidence 235788999999999988764
No 19
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.78 E-value=2.6e-18 Score=139.52 Aligned_cols=136 Identities=26% Similarity=0.369 Sum_probs=100.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+..+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.+++|++.+++.+ ++++..|..+. .+.++||+|+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEE
Confidence 567999999999999999998766 4589999999999999999999999866 99999999873 34689999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeeeeccc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
|||++.-. .....-...+++++.++|+|||.++++..... .....+ +..|..+++.....+|
T Consensus 105 NPP~~~~~-------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~-~~~~~l-~~~f~~~~~~~~~~~~ 166 (170)
T PF05175_consen 105 NPPFHAGG-------DDGLDLLRDFIEQARRYLKPGGRLFLVINSHL-GYERLL-KELFGDVEVVAKNKGF 166 (170)
T ss_dssp ---SBTTS-------HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS-CHHHHH-HHHHS--EEEEEESSE
T ss_pred ccchhccc-------ccchhhHHHHHHHHHHhccCCCEEEEEeecCC-ChHHHH-HHhcCCEEEEEECCCE
Confidence 99976544 00112457899999999999999976443222 222234 3346677777766664
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.78 E-value=2.3e-18 Score=152.41 Aligned_cols=129 Identities=20% Similarity=0.242 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|++++...+...++.++++|+.+++..+++||+|+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE
Confidence 4568999999999999888753 4699999999999999998877655545799999999888766789999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------------CCchH
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------------LHVPE 243 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------------~~~~~ 243 (293)
..+++|++ ++..+++++.++|||||.+++... ...++
T Consensus 205 ~~vLeHv~------------d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~e 272 (322)
T PLN02396 205 LEVIEHVA------------NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEE 272 (322)
T ss_pred hhHHHhcC------------CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHH
Confidence 99999999 889999999999999999987421 12467
Q ss_pred HHHHHHHcCCcceEEeee
Q 022698 244 YVRRLQELKMEDIRVSER 261 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~~~ 261 (293)
+.++++++||+.+++.-.
T Consensus 273 L~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 273 LSMILQRASVDVKEMAGF 290 (322)
T ss_pred HHHHHHHcCCeEEEEeee
Confidence 899999999998877443
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=2.7e-18 Score=129.56 Aligned_cols=109 Identities=34% Similarity=0.427 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC-CCCCCCCCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV-RSLPFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~Iv 193 (293)
|+.+|||+|||+|..+..+++..+ +++++|+|+|+.+++.+++++...+..+++++++.|+ .... ..++||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP----GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-FLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT----TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-TSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-cCCCCCEEE
Confidence 467999999999999999998655 5799999999999999999997777778999999999 3332 245699999
Q ss_pred ecc-hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAA-FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++. ..+++. ..++..++++++.+.|+|||++++..
T Consensus 76 ~~~~~~~~~~---------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLL---------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCC---------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCcccccc---------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 998 444332 01377889999999999999999854
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.78 E-value=1.7e-17 Score=136.04 Aligned_cols=141 Identities=23% Similarity=0.195 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++..+ +++|+++|+|+.+++.++++++.++..+ ++++.+|+.+++. .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~----~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP----ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-CCCccEEE
Confidence 3478999999999999999987655 5799999999999999999999998754 9999999988765 67899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chHHHHHHHHcCCcceEEe-eeeccceeccee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPEYVRRLQELKMEDIRVS-ERVTAFMVSSHI 271 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~l~~~gf~~~~~~-~~~~~~~~~~~~ 271 (293)
++. .. ++..+++.+.++|+|||.+++..... ..+..++.+..|....++. -.+.+.+...|+
T Consensus 118 ~~~----~~------------~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (187)
T PRK00107 118 SRA----VA------------SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHL 181 (187)
T ss_pred Ecc----cc------------CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEE
Confidence 974 22 56689999999999999999875444 3455566667788755544 367777777788
Q ss_pred eeeec
Q 022698 272 VSFRK 276 (293)
Q Consensus 272 ~~~~~ 276 (293)
+..||
T Consensus 182 ~~~~~ 186 (187)
T PRK00107 182 VIIRK 186 (187)
T ss_pred EEEec
Confidence 88776
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.78 E-value=4e-18 Score=135.97 Aligned_cols=114 Identities=30% Similarity=0.559 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I 192 (293)
.+.+|||+|||+|.++..+++... ++.+++|+|+|+.+++.|+++++..+.. +++|.+.|+.+++ ++ ++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~---~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELN---PGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHST---TTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcC---CCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEE
Confidence 467999999999999999986432 2579999999999999999999998875 7999999999976 43 789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHH
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYV 245 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 245 (293)
+++.++++.. ++..+++++.+.|++||.+++.+.....++.
T Consensus 78 ~~~~~l~~~~------------~~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~ 118 (152)
T PF13847_consen 78 ISNGVLHHFP------------DPEKVLKNIIRLLKPGGILIISDPNHNDELP 118 (152)
T ss_dssp EEESTGGGTS------------HHHHHHHHHHHHEEEEEEEEEEEEEHSHHHH
T ss_pred EEcCchhhcc------------CHHHHHHHHHHHcCCCcEEEEEECChHHHHH
Confidence 9999999988 8899999999999999999997766444433
No 24
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.77 E-value=8.9e-18 Score=149.19 Aligned_cols=141 Identities=22% Similarity=0.290 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.+.+.+++......++.+|||+|||+|.++..+++..+ ..+++++|+|+.|++.++++... .+++++.+|+
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~----~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~ 169 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDA 169 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccH
Confidence 344455555443224567999999999999988887654 35899999999999999987643 3478899999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------CCc
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------LHV 241 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------~~~ 241 (293)
.++++++++||+|+++.++++.+ ++...++++.++|+|||.+++++. ...
T Consensus 170 e~lp~~~~sFDvVIs~~~L~~~~------------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~ 237 (340)
T PLN02490 170 EDLPFPTDYADRYVSAGSIEYWP------------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKE 237 (340)
T ss_pred HhCCCCCCceeEEEEcChhhhCC------------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCH
Confidence 98888788999999999999888 778899999999999999987532 234
Q ss_pred hHHHHHHHHcCCcceEEee
Q 022698 242 PEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~~ 260 (293)
+++.++++++||+.+++..
T Consensus 238 eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 238 EEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred HHHHHHHHHCCCeEEEEEE
Confidence 6788999999999988754
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.77 E-value=4.3e-18 Score=124.13 Aligned_cols=95 Identities=42% Similarity=0.661 Sum_probs=82.8
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhh
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFH 199 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~ 199 (293)
||+|||+|..+..+++. + +.+++++|+|+.+++.++++....+ +.+...|+.++|+++++||+|+++..++
T Consensus 1 LdiG~G~G~~~~~l~~~-~----~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G----GASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T----TCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-c----CCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcccccccccccccccee
Confidence 89999999999999877 3 4699999999999999999876543 5699999999999999999999999999
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+++ ++..+++++.|+|||||++++
T Consensus 72 ~~~------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLE------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSS------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecc------------CHHHHHHHHHHHcCcCeEEeC
Confidence 997 999999999999999999986
No 26
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.76 E-value=3.6e-17 Score=147.33 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=114.9
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEEcCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ--EYVTAREGDVR 180 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~--~~v~~~~~d~~ 180 (293)
.+.+++.+.. ....+|||+|||+|.++..+++..| ..+|+++|+|+.|++.+++|++.++.. .++++...|..
T Consensus 217 trllL~~lp~-~~~~~VLDLGCGtGvi~i~la~~~P----~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l 291 (378)
T PRK15001 217 ARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNP----QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 291 (378)
T ss_pred HHHHHHhCCc-ccCCeEEEEeccccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc
Confidence 4556666643 3346999999999999999998876 469999999999999999999887643 36899999886
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEee
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+. .+.++||+|+||||||.... .......++++.+.++|+|||.++++.... -.+...|++ .|..+++..
T Consensus 292 ~~-~~~~~fDlIlsNPPfh~~~~-------~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~-l~y~~~L~~-~fg~~~~va 361 (378)
T PRK15001 292 SG-VEPFRFNAVLCNPPFHQQHA-------LTDNVAWEMFHHARRCLKINGELYIVANRH-LDYFHKLKK-IFGNCTTIA 361 (378)
T ss_pred cc-CCCCCEEEEEECcCcccCcc-------CCHHHHHHHHHHHHHhcccCCEEEEEEecC-cCHHHHHHH-HcCCceEEc
Confidence 53 34468999999999985421 011244679999999999999999975433 335566655 366777665
Q ss_pred eeccceecceeeeeec
Q 022698 261 RVTAFMVSSHIVSFRK 276 (293)
Q Consensus 261 ~~~~~~~~~~~~~~~~ 276 (293)
.-.+|. ++.++|
T Consensus 362 ~~~kf~----vl~a~k 373 (378)
T PRK15001 362 TNNKFV----VLKAVK 373 (378)
T ss_pred cCCCEE----EEEEEe
Confidence 555554 666666
No 27
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.76 E-value=2.9e-17 Score=136.15 Aligned_cols=145 Identities=25% Similarity=0.266 Sum_probs=118.6
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC--CCcEEEEEeCCHHHHHHHHHHHHhcCCCCc--eEE
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG--SLGRVVGLDCKKRTTLSTLRTAKMEGVQEY--VTA 174 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~--~~~~v~~vDis~~~l~~a~~~~~~~~~~~~--v~~ 174 (293)
+.-.-+..+..+.. ..+.++||++||||.++.-+.++.+... ...+|+.+|||++|+..+++++...++... +.+
T Consensus 85 HRlWKd~~v~~L~p-~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w 163 (296)
T KOG1540|consen 85 HRLWKDMFVSKLGP-GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEW 163 (296)
T ss_pred hHHHHHHhhhccCC-CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEE
Confidence 33344445555543 4568999999999999999998876421 126999999999999999999987776654 899
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch-HHHHHHHHcCC
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP-EYVRRLQELKM 253 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~l~~~gf 253 (293)
+.+|++++|+++.+||..+....+..++ ++.+.+++++|+|||||++.+.++...+ +..+.|..+++
T Consensus 164 ~~~dAE~LpFdd~s~D~yTiafGIRN~t------------h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ys 231 (296)
T KOG1540|consen 164 VEGDAEDLPFDDDSFDAYTIAFGIRNVT------------HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYS 231 (296)
T ss_pred EeCCcccCCCCCCcceeEEEecceecCC------------CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhh
Confidence 9999999999999999999999998888 8999999999999999999998887766 67777766665
Q ss_pred cce
Q 022698 254 EDI 256 (293)
Q Consensus 254 ~~~ 256 (293)
..+
T Consensus 232 f~V 234 (296)
T KOG1540|consen 232 FDV 234 (296)
T ss_pred hhh
Confidence 433
No 28
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.76 E-value=2.7e-17 Score=143.64 Aligned_cols=132 Identities=31% Similarity=0.467 Sum_probs=111.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+.++.+|||+|||+|..+..+++.... ..+|+++|+|+.+++.|+++....+. +++.++.+|+.++++++++||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~---~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGP---TGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEE
Confidence 457789999999999988777665432 35899999999999999999888776 46899999999888777899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC------------------------CCchHHHHHH
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL------------------------LHVPEYVRRL 248 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------------------~~~~~~~~~l 248 (293)
+++.++++.+ +...+++++.++|||||++++.+. ....++.+++
T Consensus 151 i~~~v~~~~~------------d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 218 (272)
T PRK11873 151 ISNCVINLSP------------DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAML 218 (272)
T ss_pred EEcCcccCCC------------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHH
Confidence 9999998887 778899999999999999998542 1235788899
Q ss_pred HHcCCcceEEee
Q 022698 249 QELKMEDIRVSE 260 (293)
Q Consensus 249 ~~~gf~~~~~~~ 260 (293)
+++||..+++..
T Consensus 219 ~~aGf~~v~i~~ 230 (272)
T PRK11873 219 AEAGFVDITIQP 230 (272)
T ss_pred HHCCCCceEEEe
Confidence 999999987743
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=3.4e-17 Score=140.89 Aligned_cols=110 Identities=20% Similarity=0.296 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++.+.. ++.+++++|+|+.|++.|++++...+...+++++++|+.++++ ..+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEe
Confidence 35679999999999999888775321 2579999999999999999999887766679999999988765 3599999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++.++++++ ..+...+++++++.|||||.+++.+
T Consensus 131 ~~~~l~~l~----------~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLE----------PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCC----------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999887 2356789999999999999999865
No 30
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=2.3e-18 Score=142.58 Aligned_cols=104 Identities=27% Similarity=0.424 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||-|.++..+++. +++|+|+|+|+.+++.|+..+...++. +.+.+..++++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEE
Confidence 6789999999999999999887 579999999999999999999999875 77888888877655589999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+++|++ ++..+++.+.+++||||.+++++.
T Consensus 131 mEVlEHv~------------dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 131 MEVLEHVP------------DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred hhHHHccC------------CHHHHHHHHHHHcCCCcEEEEecc
Confidence 99999999 999999999999999999999654
No 31
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.75 E-value=2.4e-17 Score=138.77 Aligned_cols=144 Identities=18% Similarity=0.297 Sum_probs=114.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYF 189 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~f 189 (293)
......+|||+|||+|.+++.++++.+ .+++++||+++.+.+.|++|.+.+++.+++++++.|+.++. ....+|
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~----~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTE----KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCC----CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccccc
Confidence 344478999999999999999998865 36999999999999999999999999999999999998864 234579
Q ss_pred cEEEecchhhhhccc----c--CcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-CCchHHHHHHHHcCCcceEEe
Q 022698 190 DVVVSAAFFHTVGKE----Y--GHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~----~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~l~~~gf~~~~~~ 259 (293)
|+|+|||||+..... + ..+-....-+..++++.+.++|||||.+.++.. ....++.+.+++.+|...++.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999766533 0 111111112356789999999999999988653 345678999999999877664
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.75 E-value=3e-17 Score=142.03 Aligned_cols=108 Identities=29% Similarity=0.331 Sum_probs=90.5
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
...+++.+. ..++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.|++.++++ +++++++|+.++
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p----~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~ 84 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWP----GAVIEALDSSPEMVAAARER--------GVDARTGDVRDW 84 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhC
Confidence 345566654 35668999999999999999988765 46999999999999988653 267899999876
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+ ++++||+|+|+.++++++ ++..+++++.++|||||.+++.
T Consensus 85 ~-~~~~fD~v~~~~~l~~~~------------d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 85 K-PKPDTDVVVSNAALQWVP------------EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred C-CCCCceEEEEehhhhhCC------------CHHHHHHHHHHhCCCCcEEEEE
Confidence 4 467899999999999998 8889999999999999999873
No 33
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.74 E-value=4.7e-17 Score=138.07 Aligned_cols=128 Identities=22% Similarity=0.324 Sum_probs=109.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
++|||||||+|..+..+++..+ +.+++++|+|+.+++.++++....++.+++++...|....+. .++||+|+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHH
Confidence 3799999999999998888764 469999999999999999999888888889999999876554 35899999999
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------CchHHHHHHHHcCCcceEEe
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-----------------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------~~~~~~~~l~~~gf~~~~~~ 259 (293)
++++++ ++..+++++.++|+|||.+++.+.. ...++.+.+.++||+.++..
T Consensus 76 ~l~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 76 VIHHIK------------DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HHHhCC------------CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 999988 7889999999999999999986532 23468889999999988776
Q ss_pred ee
Q 022698 260 ER 261 (293)
Q Consensus 260 ~~ 261 (293)
..
T Consensus 144 ~~ 145 (224)
T smart00828 144 DA 145 (224)
T ss_pred EC
Confidence 43
No 34
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.74 E-value=1.3e-16 Score=136.39 Aligned_cols=155 Identities=30% Similarity=0.395 Sum_probs=124.0
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
..++..+. ..++.+|||+|||+|..+..++...+. ..+++++|+++.+++.+++++..++...++.+...|+.+.+
T Consensus 41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGK---TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 34444443 335679999999999999999887642 36999999999999999999877655567899999998877
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC------------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------ 239 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------ 239 (293)
.+.++||+|+++..+++.. ++..+++++.+.|+|||.+++++..
T Consensus 117 ~~~~~~D~I~~~~~l~~~~------------~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVP------------DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGK 184 (239)
T ss_pred CCCCCccEEEEecccccCC------------CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHH
Confidence 6667899999998888887 7889999999999999999875421
Q ss_pred --------------------CchHHHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 240 --------------------HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 240 --------------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
...++.++++++||+.+++.....+.. .++.++||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~---~~~~~~~~ 239 (239)
T PRK00216 185 LISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIV---ALHVGYKP 239 (239)
T ss_pred HHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcE---EEEEEecC
Confidence 123477788999999999887776765 57777664
No 35
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.74 E-value=1.3e-16 Score=142.81 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=119.3
Q ss_pred CccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 95 AVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+.+..+.+...++... ...++.+|||+|||+|.++..++.. +.+++|+|+++.|++.+++|++..+..+ +.+
T Consensus 163 ~~~l~~~la~~~~~l~-~~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~ 234 (329)
T TIGR01177 163 PGSMDPKLARAMVNLA-RVTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIED-FFV 234 (329)
T ss_pred CCCCCHHHHHHHHHHh-CCCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeE
Confidence 3445567777777655 3567789999999999998876543 4699999999999999999999888765 889
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCc
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKME 254 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~ 254 (293)
..+|+.+++..+++||+|++||||.......+. ...+....+++++.++|+|||+++++.. ...++.+.++++||
T Consensus 235 ~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~---~~~~l~~~~l~~~~r~Lk~gG~lv~~~~-~~~~~~~~~~~~g~- 309 (329)
T TIGR01177 235 KRGDATKLPLSSESVDAIATDPPYGRSTTAAGD---GLESLYERSLEEFHEVLKSEGWIVYAVP-TRIDLESLAEDAFR- 309 (329)
T ss_pred EecchhcCCcccCCCCEEEECCCCcCcccccCC---chHHHHHHHHHHHHHHccCCcEEEEEEc-CCCCHHHHHhhcCc-
Confidence 999999988767899999999998643211111 1112357899999999999999988643 33467788999999
Q ss_pred ceEEeeeecc
Q 022698 255 DIRVSERVTA 264 (293)
Q Consensus 255 ~~~~~~~~~~ 264 (293)
.+.......+
T Consensus 310 i~~~~~~~~h 319 (329)
T TIGR01177 310 VVKRFEVRVH 319 (329)
T ss_pred chheeeeeee
Confidence 6666554333
No 36
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.5e-16 Score=136.61 Aligned_cols=153 Identities=20% Similarity=0.328 Sum_probs=116.0
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.+++.+.. ....+|||+|||.|.+++.+++..| ..+++.+|+|..+++.+++|++.|++... .+...|..+.
T Consensus 147 S~lLl~~l~~-~~~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~ 220 (300)
T COG2813 147 SRLLLETLPP-DLGGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEP 220 (300)
T ss_pred HHHHHHhCCc-cCCCcEEEeCCCccHHHHHHHHhCC----CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccc
Confidence 3445566543 4455999999999999999999977 46999999999999999999999987543 6777887763
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeeee
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
..+ +||.|+||||+|.-.. ....-..++++...+.|++||.|.++-. ....+...|++. |..+++...-
T Consensus 221 -v~~-kfd~IisNPPfh~G~~-------v~~~~~~~~i~~A~~~L~~gGeL~iVan-~~l~y~~~L~~~-Fg~v~~la~~ 289 (300)
T COG2813 221 -VEG-KFDLIISNPPFHAGKA-------VVHSLAQEIIAAAARHLKPGGELWIVAN-RHLPYEKKLKEL-FGNVEVLAKN 289 (300)
T ss_pred -ccc-cccEEEeCCCccCCcc-------hhHHHHHHHHHHHHHhhccCCEEEEEEc-CCCChHHHHHHh-cCCEEEEEeC
Confidence 333 8999999999985430 1111234799999999999999988655 445566666655 7788888777
Q ss_pred ccceecceeeeeec
Q 022698 263 TAFMVSSHIVSFRK 276 (293)
Q Consensus 263 ~~~~~~~~~~~~~~ 276 (293)
.+|. ++.++|
T Consensus 290 ~gf~----Vl~a~k 299 (300)
T COG2813 290 GGFK----VLRAKK 299 (300)
T ss_pred CCEE----EEEEec
Confidence 7764 666554
No 37
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.73 E-value=2.1e-16 Score=140.68 Aligned_cols=138 Identities=23% Similarity=0.287 Sum_probs=107.8
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+...+.. ..+.+|||||||+|..+..++...+ ..|+|+|+|+.++..++...+..+...++.++.+|+.+++.
T Consensus 113 ~l~~~l~~-l~g~~VLDIGCG~G~~~~~la~~g~-----~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322)
T PRK15068 113 RVLPHLSP-LKGRTVLDVGCGNGYHMWRMLGAGA-----KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322)
T ss_pred HHHHhhCC-CCCCEEEEeccCCcHHHHHHHHcCC-----CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC
Confidence 34445543 3467999999999999988887632 37999999999987655443333323469999999998887
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------C
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------L 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------~ 239 (293)
.++||+|+|+.+++|.. ++..+++++++.|+|||.+++.+. .
T Consensus 187 -~~~FD~V~s~~vl~H~~------------dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lp 253 (322)
T PRK15068 187 -LKAFDTVFSMGVLYHRR------------SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIP 253 (322)
T ss_pred -cCCcCEEEECChhhccC------------CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCC
Confidence 77899999999999987 889999999999999999987321 0
Q ss_pred CchHHHHHHHHcCCcceEEeee
Q 022698 240 HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
...++...|+++||+.+++...
T Consensus 254 s~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 254 SVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred CHHHHHHHHHHcCCceEEEEeC
Confidence 2346889999999999988643
No 38
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.73 E-value=1.1e-16 Score=137.16 Aligned_cols=111 Identities=16% Similarity=0.242 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++.++. ++++++|+|+|+.|++.|+++++..+...+++++++|+.+++++ ++|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~--p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ--PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEe
Confidence 35679999999999999999887531 15799999999999999999988765555689999999987653 589999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++.++++++ .++...++++++++|+|||.+++.+.
T Consensus 128 ~~~~l~~~~----------~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFLP----------PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhCC----------HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 999999886 33678899999999999999998753
No 39
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.73 E-value=1.9e-16 Score=131.69 Aligned_cols=104 Identities=23% Similarity=0.335 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++++...++ .++.+...|+.+.++ .++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~-~~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF-DGEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc-CCCcCEEE
Confidence 34679999999999999988865 46999999999999999999888776 348889999887665 45799999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
|+.++++++ ..+...+++++.++|+|||.+++
T Consensus 101 ~~~~~~~~~----------~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFLE----------AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhCC----------HHHHHHHHHHHHHHcCCCcEEEE
Confidence 999988776 33678999999999999998655
No 40
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.72 E-value=2e-16 Score=129.64 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=104.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|.++..+++.. .+++++|+|+.+++.+++|...++. ++++..+|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG------KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC------CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEE
Confidence 45689999999999998888652 3899999999999999999988775 3889999987643 458999999
Q ss_pred cchhhhhccccCcch---------hhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEe
Q 022698 195 AAFFHTVGKEYGHRT---------VEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~ 259 (293)
|+|+++.+....... .........+++++.++|+|||.++++... ..+++.+.+++.||+...+.
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEE
Confidence 999987653221100 001123567899999999999998886543 36688999999999866554
No 41
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.71 E-value=1.2e-16 Score=137.99 Aligned_cols=116 Identities=24% Similarity=0.335 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
..+....+.+++.+.. .+..+|||+|||+|..+..++.. +.+++++|+|+.|++.++++.. ...+++
T Consensus 25 ~~q~~~a~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~------~~~~~~ 91 (251)
T PRK10258 25 ELQRQSADALLAMLPQ-RKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA------ADHYLA 91 (251)
T ss_pred HHHHHHHHHHHHhcCc-cCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC------CCCEEE
Confidence 3556677777777753 35678999999999998877653 4699999999999999987743 146788
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+|+..+++++++||+|+++.++++.+ ++..+++++.++|+|||.+++..
T Consensus 92 ~d~~~~~~~~~~fD~V~s~~~l~~~~------------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 92 GDIESLPLATATFDLAWSNLAVQWCG------------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cCcccCcCCCCcEEEEEECchhhhcC------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 99998888788999999999999988 88999999999999999999864
No 42
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.71 E-value=6.2e-16 Score=138.42 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=111.6
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+.. ....+|||+|||+|.++..+++..+ ..+++++|+|+.|++.++++++.+++. .++...|+...
T Consensus 186 ~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p----~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~- 257 (342)
T PRK09489 186 QLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP----KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD- 257 (342)
T ss_pred HHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-
Confidence 445555543 3345899999999999999988765 468999999999999999999998864 56777887653
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeeeec
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVT 263 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~ 263 (293)
..++||+|+||+|+|.... ........+++++.+.|+|||.++++.....+ +...+.+. |..+++.....
T Consensus 258 -~~~~fDlIvsNPPFH~g~~-------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~-y~~~l~~~-Fg~~~~la~~~ 327 (342)
T PRK09489 258 -IKGRFDMIISNPPFHDGIQ-------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLP-YPDLLDET-FGSHEVLAQTG 327 (342)
T ss_pred -cCCCccEEEECCCccCCcc-------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCC-hHHHHHHH-cCCeEEEEeCC
Confidence 2578999999999985320 01235678999999999999999886654433 33444433 66777776666
Q ss_pred cceecceeeeeecC
Q 022698 264 AFMVSSHIVSFRKP 277 (293)
Q Consensus 264 ~~~~~~~~~~~~~~ 277 (293)
+|. ++.++|.
T Consensus 328 ~f~----v~~a~~~ 337 (342)
T PRK09489 328 RFK----VYRAIMT 337 (342)
T ss_pred CEE----EEEEEcc
Confidence 654 6666553
No 43
>PLN02672 methionine S-methyltransferase
Probab=99.71 E-value=2e-16 Score=157.40 Aligned_cols=173 Identities=16% Similarity=0.092 Sum_probs=123.0
Q ss_pred HhhhcccccccCccchH------HHHHHHHHhcCCC----CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH
Q 022698 84 LFFAAGNFFYSAVPLHY------DMAQRMVGSVNDW----STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK 153 (293)
Q Consensus 84 ~~~~~~~f~~~~~~~~~------~~~~~l~~~~~~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~ 153 (293)
...+..+||+..+.+.+ +.++.+++.+... .++.+|||+|||+|++++.+++..+ ..+++|+|+|+
T Consensus 77 ~~~G~~~F~~l~~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~----~~~v~avDis~ 152 (1082)
T PLN02672 77 DYEGFRNRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL----PSKVYGLDINP 152 (1082)
T ss_pred CCCCeEEecCCceeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC----CCEEEEEECCH
Confidence 33467778777665442 2333333332111 1245899999999999999998876 35999999999
Q ss_pred HHHHHHHHHHHhcCC---------------CCceEEEEcCCCCCCCC-CCcccEEEecchhhhhcc-----------cc-
Q 022698 154 RTTLSTLRTAKMEGV---------------QEYVTAREGDVRSLPFG-DNYFDVVVSAAFFHTVGK-----------EY- 205 (293)
Q Consensus 154 ~~l~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~~~-~~~fD~Iv~~~~~~~~~~-----------~~- 205 (293)
.+++.|++|++.+++ .++++|+++|+.+.... ..+||+|||||||..... +|
T Consensus 153 ~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~ 232 (1082)
T PLN02672 153 RAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASE 232 (1082)
T ss_pred HHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccc
Confidence 999999999988643 24799999999874311 237999999999864331 11
Q ss_pred --------Ccch------hhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCchHHH-HHHHHcCCcceEEee
Q 022698 206 --------GHRT------VEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVPEYV-RRLQELKMEDIRVSE 260 (293)
Q Consensus 206 --------~~~~------~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~-~~l~~~gf~~~~~~~ 260 (293)
..+. .....-...++.++.++|+|||++++ ++..+.+.+. +++++.||..+++++
T Consensus 233 ~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 233 EFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred ccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeEEee
Confidence 0111 11222345677778889999999988 7888888898 699999999887764
No 44
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.71 E-value=3.9e-16 Score=135.44 Aligned_cols=115 Identities=28% Similarity=0.423 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++.+ .+.++.+|||||||.|..+..+++.. +++|+|+++|++..+.+++.++..|+.+++++...|..+
T Consensus 50 k~~~~~~~~-~l~~G~~vLDiGcGwG~~~~~~a~~~-----g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 50 KLDLLCEKL-GLKPGDRVLDIGCGWGGLAIYAAERY-----GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHTTT-T--TT-EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHh-CCCCCCEEEEeCCCccHHHHHHHHHc-----CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 445566665 37889999999999999999999886 379999999999999999999999998899999999988
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++ .+||.|+|...+.|+. .++...+++++.++|||||++++
T Consensus 124 ~~---~~fD~IvSi~~~Ehvg----------~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 124 LP---GKFDRIVSIEMFEHVG----------RKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp ------S-SEEEEESEGGGTC----------GGGHHHHHHHHHHHSETTEEEEE
T ss_pred cC---CCCCEEEEEechhhcC----------hhHHHHHHHHHHHhcCCCcEEEE
Confidence 64 3899999999999986 23778999999999999999987
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.71 E-value=7.1e-16 Score=127.24 Aligned_cols=136 Identities=14% Similarity=0.158 Sum_probs=105.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+...++..+. ..++.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++|+..++. .++++..+|...
T Consensus 19 ~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~ 92 (187)
T PRK08287 19 VRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFP----SLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI 92 (187)
T ss_pred HHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh
Confidence 3334445543 45678999999999999999988755 46999999999999999999988876 358999988753
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEe
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
++ .++||+|+++.... ....+++.+.+.|+|||.+++.. ....++..+.+++.||..+++.
T Consensus 93 -~~-~~~~D~v~~~~~~~---------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 93 -EL-PGKADAIFIGGSGG---------------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred -hc-CcCCCEEEECCCcc---------------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEE
Confidence 23 35799999875433 23467888999999999998753 3455678889999999887764
Q ss_pred e
Q 022698 260 E 260 (293)
Q Consensus 260 ~ 260 (293)
.
T Consensus 156 ~ 156 (187)
T PRK08287 156 Q 156 (187)
T ss_pred E
Confidence 3
No 46
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.71 E-value=3.1e-16 Score=138.29 Aligned_cols=137 Identities=19% Similarity=0.179 Sum_probs=104.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.++..+. ..++.+|||+|||+|..+..++...+ ..|+|+|+|+.|+..++...+..+...++.+...++.+++.
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~-----~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGA-----KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCC-----CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC
Confidence 3444443 24567999999999999887776522 37999999999988765433322223458888899888764
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------C
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------L 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------~ 239 (293)
..+||+|+|+.+++|.+ ++..++++++++|+|||.|++.+. .
T Consensus 186 -~~~FD~V~s~gvL~H~~------------dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flp 252 (314)
T TIGR00452 186 -LYAFDTVFSMGVLYHRK------------SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIP 252 (314)
T ss_pred -CCCcCEEEEcchhhccC------------CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCC
Confidence 34799999999999998 889999999999999999987321 0
Q ss_pred CchHHHHHHHHcCCcceEEee
Q 022698 240 HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++...++++||+.+++..
T Consensus 253 S~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 253 SVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred CHHHHHHHHHHCCCeEEEEEe
Confidence 234567889999999998764
No 47
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.70 E-value=6.7e-17 Score=119.82 Aligned_cols=100 Identities=34% Similarity=0.605 Sum_probs=81.8
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec-ch
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA-AF 197 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~-~~ 197 (293)
|||+|||+|..+..+++.+ ..++..+++++|+|+.|++.++++....+. ++++++.|+.+++..+++||+|+++ .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999999887 323346999999999999999999987665 4899999999987777899999994 55
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCc
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 231 (293)
++++. +++...+++++.++|+|||
T Consensus 78 ~~~~~----------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLS----------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSS----------HHHHHHHHHHHHHTEEEEE
T ss_pred cCCCC----------HHHHHHHHHHHHHHhCCCC
Confidence 88877 4578899999999999998
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.70 E-value=7e-16 Score=126.25 Aligned_cols=124 Identities=20% Similarity=0.228 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|.++..++...+ ..+|+++|+|+.+++.++++++.++.. +++++++|+.+++ ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~----~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP----ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEe
Confidence 367999999999999998876544 468999999999999999999888874 5999999998864 3578999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chHHHHHHHH---cCCcceEEee
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPEYVRRLQE---LKMEDIRVSE 260 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~l~~---~gf~~~~~~~ 260 (293)
+. ++ +...+++.+.++|+|||.+++..... ..+.....+. .||+.+....
T Consensus 116 ~~-~~---------------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 116 RA-LA---------------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred hh-hh---------------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccc
Confidence 86 32 34467888899999999998865433 3333333333 6888776654
No 49
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.69 E-value=1.8e-15 Score=127.99 Aligned_cols=145 Identities=23% Similarity=0.242 Sum_probs=111.7
Q ss_pred HHHHHHHhcCC-CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 102 MAQRMVGSVND-WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 102 ~~~~l~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
+.+.+++.+.. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.|++++...+..+++.+.+.|+.
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 44445555442 345789999999999999988764 35999999999999999999887766557999999998
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----------------------
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---------------------- 238 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------------------- 238 (293)
+.+ ++||+|++..++++.+ ..+...+++++.+.+++++.+.+...
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~----------~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYP----------ASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATS 181 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCC----------HHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccc
Confidence 764 6899999998887775 23677889999999988777665321
Q ss_pred ---CCchHHHHHHHHcCCcceEEeeeeccc
Q 022698 239 ---LHVPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 239 ---~~~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
...+++.++++++||+.+.......++
T Consensus 182 ~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 182 AYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred eEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 123568888999999988776555443
No 50
>PRK08317 hypothetical protein; Provisional
Probab=99.69 E-value=1.8e-15 Score=129.22 Aligned_cols=141 Identities=30% Similarity=0.382 Sum_probs=111.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++.+|||+|||+|..+..++..++ +.++++++|+|+.+++.++++.... ..++.+...|+..
T Consensus 7 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~---~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~ 80 (241)
T PRK08317 7 YRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVG---PEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEeccccc
Confidence 3344555443 56778999999999999999988762 1469999999999999998883322 3568999999988
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
.++++++||+|+++.++++++ ++..+++++.++|+|||.+++.+..
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLE------------DPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS 148 (241)
T ss_pred CCCCCCCceEEEEechhhccC------------CHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH
Confidence 777778999999999999988 8889999999999999999875421
Q ss_pred -------CchHHHHHHHHcCCcceEEee
Q 022698 240 -------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 -------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
....+.+.++++||..++...
T Consensus 149 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 149 DHFADPWLGRRLPGLFREAGLTDIEVEP 176 (241)
T ss_pred hcCCCCcHHHHHHHHHHHcCCCceeEEE
Confidence 012467788999999876644
No 51
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=9.7e-16 Score=131.37 Aligned_cols=114 Identities=27% Similarity=0.400 Sum_probs=100.3
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+.+.+ ++.++.+|||||||.|..++.++++. +.+|+|+++|+++.+.+++.+...|+..++++...|..++.
T Consensus 63 ~~~~kl-~L~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~- 135 (283)
T COG2230 63 LILEKL-GLKPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE- 135 (283)
T ss_pred HHHHhc-CCCCCCEEEEeCCChhHHHHHHHHHc-----CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-
Confidence 344444 47899999999999999999999886 36999999999999999999999999889999999999864
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++||.|||...++|+.. ++...+++.+.++|+|||.+++..
T Consensus 136 --e~fDrIvSvgmfEhvg~----------~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 136 --EPFDRIVSVGMFEHVGK----------ENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred --cccceeeehhhHHHhCc----------ccHHHHHHHHHhhcCCCceEEEEE
Confidence 45999999999999983 378999999999999999998843
No 52
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.68 E-value=6.3e-16 Score=128.30 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.+++++..+++. +.+...|+...++ +++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~-~~~fD~I~ 99 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAAL-NEDYDFIF 99 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccc-cCCCCEEE
Confidence 34579999999999999998864 469999999999999999998877764 7788888766554 35799999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
++.++++++ ..+...+++++.++|+|||.++++
T Consensus 100 ~~~~~~~~~----------~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 100 STVVFMFLQ----------AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EecccccCC----------HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999998875 236778999999999999996664
No 53
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.68 E-value=3.2e-15 Score=126.36 Aligned_cols=149 Identities=28% Similarity=0.367 Sum_probs=116.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+++.+. ..++.+|||+|||+|..+..+++..+. ..+++++|+++.+++.++++.. ...++.+..+|+.+.++
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPD---RGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCC---CceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC
Confidence 3444443 236789999999999999999887652 2589999999999999988865 23458999999988776
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL------------------------- 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------- 239 (293)
..++||+|+++..+++.+ ++..+++++.+.|+|||++++.+..
T Consensus 103 ~~~~~D~i~~~~~~~~~~------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVT------------DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGL 170 (223)
T ss_pred CCCcEEEEEEeeeeCCcc------------cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhh
Confidence 667899999998888877 7889999999999999999875421
Q ss_pred -------------------CchHHHHHHHHcCCcceEEeeeeccceecceeeeee
Q 022698 240 -------------------HVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 240 -------------------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
..+++.+.+.++||+.+++.+...+.. .++.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~---~~~~~~ 222 (223)
T TIGR01934 171 ISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVA---AIHVGK 222 (223)
T ss_pred hcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeeccee---eEEEec
Confidence 123577788999999888876655533 445444
No 54
>PRK14968 putative methyltransferase; Provisional
Probab=99.68 E-value=3.2e-15 Score=123.12 Aligned_cols=144 Identities=24% Similarity=0.298 Sum_probs=107.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEcCCCCCCCCCCcccEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~I 192 (293)
.++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++..++..++ +.++..|+.+. +...+||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEE
Confidence 45678999999999999988876 35999999999999999999988776544 88899998763 445589999
Q ss_pred EecchhhhhccccC---------cchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEeee
Q 022698 193 VSAAFFHTVGKEYG---------HRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 193 v~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
++|+++....+... ..+.........+++++.++|+|||.+++.. ....+++.+.+.+.||+.......
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 99998865321100 0000112245678999999999999887743 334577899999999987766554
Q ss_pred ecc
Q 022698 262 VTA 264 (293)
Q Consensus 262 ~~~ 264 (293)
...
T Consensus 175 ~~~ 177 (188)
T PRK14968 175 KFP 177 (188)
T ss_pred ccC
Confidence 333
No 55
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.67 E-value=9.1e-16 Score=131.08 Aligned_cols=141 Identities=28% Similarity=0.420 Sum_probs=108.0
Q ss_pred chHHHHHHHHHhcCCC--CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 98 LHYDMAQRMVGSVNDW--STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
.+..+...+++.+... ..+.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++.. +++.++
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~----~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~ 85 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFP----QAEFIALDISAGMLAQAKTKLS-----ENVQFI 85 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCC----CCcEEEEeChHHHHHHHHHhcC-----CCCeEE
Confidence 3444555555554432 2346899999999999999988765 4589999999999988887654 247899
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------- 239 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------- 239 (293)
.+|+.+.++++++||+|+++.++++.. ++..+++++.++|+|||.+++....
T Consensus 86 ~~d~~~~~~~~~~fD~vi~~~~l~~~~------------~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~ 153 (240)
T TIGR02072 86 CGDAEKLPLEDSSFDLIVSNLALQWCD------------DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGL 153 (240)
T ss_pred ecchhhCCCCCCceeEEEEhhhhhhcc------------CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhcc
Confidence 999998877778999999999999987 8889999999999999999985432
Q ss_pred ---CchHHHHHHHHcCCcceEEee
Q 022698 240 ---HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ---~~~~~~~~l~~~gf~~~~~~~ 260 (293)
...++.+.+.+. |..+....
T Consensus 154 ~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 154 RYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred CCCCHHHHHHHHHHh-cCCcEEEE
Confidence 123456666666 77665543
No 56
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.67 E-value=4.1e-16 Score=125.04 Aligned_cols=97 Identities=32% Similarity=0.482 Sum_probs=77.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|.++..+++. +.+++++|+|+.+++. .++.....+....+.++++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhH
Confidence 456789999999999998888554 3499999999998877 11233333333333457899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+|+.+++|++ ++..+++++.++|||||.+++...
T Consensus 83 ~~~~~l~~~~------------d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 83 ICNDVLEHLP------------DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp EEESSGGGSS------------HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hhHHHHhhcc------------cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 9999999999 999999999999999999998654
No 57
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.66 E-value=3.9e-15 Score=132.22 Aligned_cols=137 Identities=17% Similarity=0.207 Sum_probs=109.0
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.. ...+..+|||||||+|.++..+++..| ..+++++|. +.+++.++++++..++.++++++.+|+.+.+
T Consensus 139 ~~l~~~~-~~~~~~~vlDiG~G~G~~~~~~~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEA-KLDGVKKMIDVGGGIGDISAAMLKHFP----ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHc-CCCCCCEEEEeCCchhHHHHHHHHHCC----CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 3344443 345678999999999999999999876 468999997 7899999999999988889999999998655
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-----------------------
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----------------------- 240 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------- 240 (293)
++ .+|+|++...+|... .+....+++++++.|+|||++++.+...
T Consensus 213 ~~--~~D~v~~~~~lh~~~----------~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (306)
T TIGR02716 213 YP--EADAVLFCRILYSAN----------EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFS 280 (306)
T ss_pred CC--CCCEEEeEhhhhcCC----------hHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccc
Confidence 43 379999888888775 2245689999999999999999865310
Q ss_pred ------chHHHHHHHHcCCcceEE
Q 022698 241 ------VPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 241 ------~~~~~~~l~~~gf~~~~~ 258 (293)
.+++.++|+++||+.+++
T Consensus 281 ~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 281 VLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred cccCCCHHHHHHHHHHcCCCeeEe
Confidence 135778888888887764
No 58
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.66 E-value=3.9e-16 Score=118.68 Aligned_cols=112 Identities=30% Similarity=0.442 Sum_probs=88.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEEEe
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVVVS 194 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Iv~ 194 (293)
.+|||+|||+|.++..+++.. ..+++++|+++.+++.++.++..++..++++++++|..+.. .+.++||+|++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEE
Confidence 589999999999999998874 26999999999999999999999988788999999998764 56789999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+||......... ..+....+++++.++|+|||.++++.
T Consensus 77 npP~~~~~~~~~~----~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAA----LRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp --STTSBTT--------GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCccccccchh----hHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999754211000 01145689999999999999998753
No 59
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=7.4e-16 Score=133.56 Aligned_cols=111 Identities=20% Similarity=0.349 Sum_probs=92.6
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.++..+. ..++.+|||+|||+|.++..+++..+ +.+++|+|+|+.+++.++++. +++.+...|+.+
T Consensus 19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~ 87 (258)
T PRK01683 19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWP----AARITGIDSSPAMLAEARSRL------PDCQFVEADIAS 87 (258)
T ss_pred HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhc
Confidence 4555666553 35678999999999999999987765 469999999999999998774 237889999887
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+. +.++||+|+++.++++++ ++..+++++.++|||||.+++.
T Consensus 88 ~~-~~~~fD~v~~~~~l~~~~------------d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 88 WQ-PPQALDLIFANASLQWLP------------DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred cC-CCCCccEEEEccChhhCC------------CHHHHHHHHHHhcCCCcEEEEE
Confidence 54 356899999999999988 7889999999999999999874
No 60
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.66 E-value=5.3e-15 Score=123.13 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=103.1
Q ss_pred HHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCC
Q 022698 107 VGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFG 185 (293)
Q Consensus 107 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 185 (293)
+..+ ...++.+|||+|||+|.++..+++..+. ..+++++|+|+.+++.+++|++.+++.+++.++.+|..+. +..
T Consensus 33 l~~l-~~~~~~~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 33 LSKL-RLRKGDMILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHc-CCCCcCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 4444 3567889999999999999998876532 3589999999999999999999888656799999998763 222
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEee
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
.++||.|+++.. .. ++..+++.+.+.|+|||.+++.. .....+..+.+++.|| ..++.+
T Consensus 109 ~~~~D~V~~~~~---~~------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~ 169 (198)
T PRK00377 109 NEKFDRIFIGGG---SE------------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITE 169 (198)
T ss_pred CCCCCEEEECCC---cc------------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEE
Confidence 368999998642 12 55688999999999999998732 2334578888889999 445443
No 61
>PRK14967 putative methyltransferase; Provisional
Probab=99.66 E-value=5.3e-15 Score=125.39 Aligned_cols=141 Identities=26% Similarity=0.296 Sum_probs=104.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.+++|+..++. ++.++..|+.+. +++++||+|
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~----~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~V 105 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G----AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVV 105 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEE
Confidence 356679999999999999888764 2 24899999999999999999988775 378889998763 446789999
Q ss_pred Eecchhhhhcccc--Cc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEeee
Q 022698 193 VSAAFFHTVGKEY--GH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 193 v~~~~~~~~~~~~--~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
++|+||....... .. ...........+++++.++|||||+++++. .....++.+.+++.||........
T Consensus 106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVVASQ 185 (223)
T ss_pred EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEEEee
Confidence 9999986543210 00 000111235678899999999999998843 335568889999999875544433
No 62
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=3.6e-15 Score=128.87 Aligned_cols=139 Identities=27% Similarity=0.400 Sum_probs=105.0
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+.-..++... .++.+|||+|||||.++++.++.-. .+++|+|++|.+++.++.|+..|++...++....+..
T Consensus 150 ~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-----~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~ 222 (300)
T COG2264 150 SLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-----KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL 222 (300)
T ss_pred HHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-----ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch
Confidence 34444454443 3678999999999999998887632 5799999999999999999999997643333334433
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~ 258 (293)
..+ ..++||+||+|-.-. -...+...+.+.|||||++++++.. +.+.+.+.+.++||+.++.
T Consensus 223 ~~~-~~~~~DvIVANILA~---------------vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 223 EVP-ENGPFDVIVANILAE---------------VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred hhc-ccCcccEEEehhhHH---------------HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 322 346899999995322 3457888999999999999997754 4566888888999999888
Q ss_pred eeee
Q 022698 259 SERV 262 (293)
Q Consensus 259 ~~~~ 262 (293)
..+-
T Consensus 287 ~~~~ 290 (300)
T COG2264 287 LERE 290 (300)
T ss_pred EecC
Confidence 7653
No 63
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.65 E-value=3.7e-15 Score=124.69 Aligned_cols=117 Identities=22% Similarity=0.238 Sum_probs=93.9
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||+|||+|..+..+++..+. ..+|+++|+++.+++.+++|+..++..+++++..+
T Consensus 56 ~~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~---~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 56 SAPHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIER---RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred chHHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 34556666776664 456789999999999999888877642 35899999999999999999998887667999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|..+.....++||+|+++.+..+++ +++.+.|+|||++++.
T Consensus 132 d~~~~~~~~~~fD~Ii~~~~~~~~~------------------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 132 DGKRGLEKHAPFDAIIVTAAASTIP------------------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CcccCCccCCCccEEEEccCcchhh------------------HHHHHhcCcCcEEEEE
Confidence 9987543456899999998776554 3577899999999874
No 64
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.65 E-value=5e-16 Score=129.64 Aligned_cols=101 Identities=28% Similarity=0.410 Sum_probs=86.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-----ceEEEEcCCCCCCCCCCccc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-----YVTAREGDVRSLPFGDNYFD 190 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~fD 190 (293)
+.+|||+|||.|-++..|++. ++.|+|+|++++|++.|++......... ++++...|++.. .++||
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccc
Confidence 367999999999999999987 5799999999999999999965554332 367777777765 35699
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.|+|..+++|+. ++..+++.+.+.|||||.+++.+
T Consensus 161 aVvcsevleHV~------------dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 161 AVVCSEVLEHVK------------DPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeeeHHHHHHHh------------CHHHHHHHHHHHhCCCCceEeee
Confidence 999999999998 99999999999999999999854
No 65
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.65 E-value=1.5e-15 Score=123.19 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=92.8
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.++.++. ..+..+|.|+|||+|..+..|+++.| .+.++|+|-|++|++.|+++. .+++|..+|+.+..
T Consensus 21 dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP----~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~- 88 (257)
T COG4106 21 DLLARVP-LERPRRVVDLGCGPGNSTELLARRWP----DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK- 88 (257)
T ss_pred HHHhhCC-ccccceeeecCCCCCHHHHHHHHhCC----CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcC-
Confidence 3444553 45667999999999999999999998 689999999999999987663 44899999999874
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++.++|++++|.++++++ +-..++.++...|.|||+|.+
T Consensus 89 p~~~~dllfaNAvlqWlp------------dH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 89 PEQPTDLLFANAVLQWLP------------DHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred CCCccchhhhhhhhhhcc------------ccHHHHHHHHHhhCCCceEEE
Confidence 467899999999999999 888999999999999999988
No 66
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.65 E-value=8.1e-16 Score=128.33 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC-CCCC--CCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV-RSLP--FGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~ 191 (293)
+..+|||+|||+|..+..+++..+ +.+++++|+|+.+++.+++++..++. .++.++++|+ ..++ +++++||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p----~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP----DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC----CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccce
Confidence 467899999999999999988765 46899999999999999999988776 5699999999 6554 55678999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMED 255 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~ 255 (293)
|+++.+..+.... +.. .......+++++.++|||||.+++.... ...+..+.+++.|+..
T Consensus 115 V~~~~~~p~~~~~-~~~---~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 115 IYLNFPDPWPKKR-HHK---RRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFL 176 (202)
T ss_pred EEEECCCCCCCcc-ccc---cccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccc
Confidence 9997653322100 000 0002467899999999999999986432 2456788888888753
No 67
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.64 E-value=3.8e-15 Score=117.56 Aligned_cols=155 Identities=18% Similarity=0.284 Sum_probs=116.4
Q ss_pred chHHHHHHHHHhcC--CCCCC-CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 98 LHYDMAQRMVGSVN--DWSTV-KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 98 ~~~~~~~~l~~~~~--~~~~~-~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
..+.++.++.+... ++... .+|||+|||+|.+...|++. +.....+|+|.|+.+++.|+..+++.+..+.++|
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e----gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f 122 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE----GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRF 122 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh----cCCCCccccccCHHHHHHHHHHHHhcCCCcceeE
Confidence 45667777777654 12233 39999999999998877765 2235699999999999999999999999888999
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-CchHHHHHHHHcCC
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-HVPEYVRRLQELKM 253 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~l~~~gf 253 (293)
.+.|+.+..+..++||+|.--..+..+.-.+.. ....+..++..+.++|+|||++++..+. +..+..+.+...||
T Consensus 123 ~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~----~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 123 QQLDITDPDFLSGQFDLVLDKGTLDAISLSPDG----PVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNF 198 (227)
T ss_pred EEeeccCCcccccceeEEeecCceeeeecCCCC----cccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCe
Confidence 999999866667889999876666544321111 1112355778888999999999996665 45678999999998
Q ss_pred cceEEee
Q 022698 254 EDIRVSE 260 (293)
Q Consensus 254 ~~~~~~~ 260 (293)
+.....+
T Consensus 199 ~~~~tvp 205 (227)
T KOG1271|consen 199 EYLSTVP 205 (227)
T ss_pred EEEEeec
Confidence 8766654
No 68
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.64 E-value=8e-15 Score=118.48 Aligned_cols=105 Identities=23% Similarity=0.356 Sum_probs=82.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
..-.++||+|||.|.++..|+... .+++++|+|+.+++.|+++.... ++|++.+.|+.+. .+.++||+||
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC------d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC------DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE------EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHhh------CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEE
Confidence 345689999999999999998774 49999999999999999998754 4699999999774 4678999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+..+++++.+ .++...++.++...|+|||.|++..
T Consensus 112 ~SEVlYYL~~---------~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 112 LSEVLYYLDD---------AEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EES-GGGSSS---------HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EehHhHcCCC---------HHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999861 2367789999999999999999944
No 69
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.63 E-value=5.4e-15 Score=130.02 Aligned_cols=103 Identities=19% Similarity=0.275 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++++.+++ ++++...|+...++ +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEE
Confidence 3459999999999999988864 46999999999999999999988876 48888889877544 678999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+.++++++ .++...+++++.++|+|||.++++
T Consensus 191 ~~vl~~l~----------~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 191 TVVLMFLN----------RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred cchhhhCC----------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99998876 336788999999999999997664
No 70
>PRK05785 hypothetical protein; Provisional
Probab=99.63 E-value=1.2e-14 Score=123.22 Aligned_cols=91 Identities=30% Similarity=0.378 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|||+|||+|..+..+++.. +.+|+|+|+|++|++.+++. ..++++|+.++|+++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-----~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-----KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-----CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEe
Confidence 36799999999999998887764 24899999999999998753 13568899999998999999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 231 (293)
+..+++.+ ++...+++++|+|||.+
T Consensus 117 ~~~l~~~~------------d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 117 SFALHASD------------NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred cChhhccC------------CHHHHHHHHHHHhcCce
Confidence 99999888 88999999999999954
No 71
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.63 E-value=2.2e-15 Score=130.56 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCCChHHH----HHHHHhhhc-CCCcEEEEEeCCHHHHHHHHHHHH----hc-------------------
Q 022698 115 TVKTALDIGCGRGILLN----AVATQFKKT-GSLGRVVGLDCKKRTTLSTLRTAK----ME------------------- 166 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~----~l~~~~~~~-~~~~~v~~vDis~~~l~~a~~~~~----~~------------------- 166 (293)
++.+|+|+|||+|..+. .+++..+.. ..+.+|+|+|+|+.|++.|++..- ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999998544 444443321 124699999999999999997531 00
Q ss_pred ---CCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 167 ---GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 167 ---~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+..++.|.+.|+.+.+.+.++||+|+|.+++++++ ..+...+++++++.|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~----------~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD----------EPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCC----------HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 112468999999998766678999999999999987 3366789999999999999999854
No 72
>PRK04266 fibrillarin; Provisional
Probab=99.63 E-value=1.9e-14 Score=121.55 Aligned_cols=139 Identities=19% Similarity=0.209 Sum_probs=101.7
Q ss_pred HHHHHHHHHhc--CCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 100 YDMAQRMVGSV--NDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 100 ~~~~~~l~~~~--~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+...++..+ ..+.++.+|||+|||+|.++..+++..+ ..+|+++|+|+.|++.+.++++.. .++.++.+
T Consensus 55 ~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~----~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~ 127 (226)
T PRK04266 55 SKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE----EGVVYAVEFAPRPMRELLEVAEER---KNIIPILA 127 (226)
T ss_pred cchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEEC
Confidence 34455555433 3466788999999999999999988764 248999999999999888776643 45888999
Q ss_pred CCCCC----CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE------EcCCCch-----
Q 022698 178 DVRSL----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV------WDLLHVP----- 242 (293)
Q Consensus 178 d~~~~----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~------~~~~~~~----- 242 (293)
|+.+. ++ ..+||+|++..+. + .....+++++.++|||||.+++ ++....+
T Consensus 128 D~~~~~~~~~l-~~~~D~i~~d~~~---p-----------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~ 192 (226)
T PRK04266 128 DARKPERYAHV-VEKVDVIYQDVAQ---P-----------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFK 192 (226)
T ss_pred CCCCcchhhhc-cccCCEEEECCCC---h-----------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHH
Confidence 98652 12 2569999975321 1 1234578999999999999999 5544332
Q ss_pred HHHHHHHHcCCcceEEee
Q 022698 243 EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 243 ~~~~~l~~~gf~~~~~~~ 260 (293)
+..+.++++||+.++.+.
T Consensus 193 ~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 193 EEIRKLEEGGFEILEVVD 210 (226)
T ss_pred HHHHHHHHcCCeEEEEEc
Confidence 356888999999887765
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.63 E-value=1.6e-14 Score=124.55 Aligned_cols=120 Identities=29% Similarity=0.404 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|..+..+++.. ..+++|+|+|+.+++.|++|+..+++..++.+..+| .+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g-----~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLG-----AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcC-----CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEE
Confidence 467899999999999887665431 236999999999999999999988864444433222 2799999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEeee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
+|...+ ....+++++.++|||||.+++.+.. ..+++.+.+.+.||+.++..++
T Consensus 185 ani~~~---------------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 185 ANILAN---------------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred EcCcHH---------------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe
Confidence 985432 3457889999999999999997643 4567888899999998877654
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.62 E-value=2.6e-15 Score=124.57 Aligned_cols=140 Identities=23% Similarity=0.249 Sum_probs=102.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~ 191 (293)
...+|||||||+|.++..+++..| ...++|+|+|+.+++.|++++...++. +++++++|+.+++ ++++++|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p----~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP----DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeE
Confidence 345899999999999999998876 469999999999999999999888774 7999999997643 34568999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcC-CcceEEeeeec
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELK-MEDIRVSERVT 263 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~g-f~~~~~~~~~~ 263 (293)
|+++.|-.+... .+.+- .-....++++++++|||||.+++..... ..++.+.+.+.+ |+.+....++.
T Consensus 91 v~~~~pdpw~k~-~h~~~---r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 161 (194)
T TIGR00091 91 VFLNFPDPWPKK-RHNKR---RITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTDLN 161 (194)
T ss_pred EEEECCCcCCCC-Ccccc---ccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecccccccC
Confidence 999876443221 00000 0012468999999999999998854322 344666777666 77665444443
No 75
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.62 E-value=1.4e-16 Score=117.56 Aligned_cols=97 Identities=31% Similarity=0.414 Sum_probs=65.4
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEEEecch
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVVVSAAF 197 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Iv~~~~ 197 (293)
||+|||+|..+..+++.++ ..+++++|+|+.|++.++++....+.. +......+..+.. ...++||+|+++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~----~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhh
Confidence 7999999999999998875 579999999999998888888776532 2333333333321 12258999999999
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEE
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 233 (293)
+++++ ++..++++++++|+|||+|
T Consensus 76 l~~l~------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLE------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S-------------HHHHHHHHTTT-TSS-EE
T ss_pred Hhhhh------------hHHHHHHHHHHHcCCCCCC
Confidence 99997 8999999999999999986
No 76
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.62 E-value=2.5e-14 Score=114.64 Aligned_cols=138 Identities=21% Similarity=0.179 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+++....+..+ .+.++.+++|||||||.+++.++...| ..+++++|-++++++..++|+++.+. +++.++.+|+
T Consensus 20 ~EIRal~ls~L-~~~~g~~l~DIGaGtGsi~iE~a~~~p----~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~A 93 (187)
T COG2242 20 EEIRALTLSKL-RPRPGDRLWDIGAGTGSITIEWALAGP----SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDA 93 (187)
T ss_pred HHHHHHHHHhh-CCCCCCEEEEeCCCccHHHHHHHHhCC----CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccc
Confidence 34444445555 467888999999999999999995544 57999999999999999999999995 7799999998
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE--EcCCCchHHHHHHHHcCC-cce
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV--WDLLHVPEYVRRLQELKM-EDI 256 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~l~~~gf-~~~ 256 (293)
-+.-....+||.|+.... . +...+++.+...|||||++++ +.........+.+++.|+ +.+
T Consensus 94 p~~L~~~~~~daiFIGGg-~---------------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 94 PEALPDLPSPDAIFIGGG-G---------------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred hHhhcCCCCCCEEEECCC-C---------------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 763212237999998765 2 456899999999999999988 333334457778889999 544
Q ss_pred EEe
Q 022698 257 RVS 259 (293)
Q Consensus 257 ~~~ 259 (293)
++.
T Consensus 158 ~v~ 160 (187)
T COG2242 158 QVQ 160 (187)
T ss_pred EEE
Confidence 443
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=99.62 E-value=2.7e-14 Score=123.86 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=105.9
Q ss_pred CCCeEEEEcCCCChHHHHHHH--HhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVAT--QFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~--~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
++.+|+|||||.|.++..++. .++ +++++++|+++++++.|++++.. .++.++++|..+|+.+.....++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p----~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP----TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCE
Confidence 678999999998866544433 334 56999999999999999999964 78888899999999885433478999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc-----hHHHHHHHHcCCcceEEeeeeccce
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV-----PEYVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
|++. +++++. ..++.++++++++.|+|||.+++-..... +.+... .-.||+......- .+-
T Consensus 199 VF~~-ALi~~d----------k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~-~~~gf~~~~~~~P-~~~- 264 (296)
T PLN03075 199 VFLA-ALVGMD----------KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPC-DLRGFEVLSVFHP-TDE- 264 (296)
T ss_pred EEEe-cccccc----------cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChh-hCCCeEEEEEECC-CCC-
Confidence 9999 766653 22789999999999999999998432111 111111 1128886655432 221
Q ss_pred ecceeeeeecCCCCC
Q 022698 267 VSSHIVSFRKPSQHY 281 (293)
Q Consensus 267 ~~~~~~~~~~~~~~~ 281 (293)
+-..++.+||+....
T Consensus 265 v~Nsvi~~r~~~~~~ 279 (296)
T PLN03075 265 VINSVIIARKPGGPV 279 (296)
T ss_pred ceeeEEEEEeecCCc
Confidence 233578888876544
No 78
>PRK06202 hypothetical protein; Provisional
Probab=99.62 E-value=1.8e-14 Score=122.96 Aligned_cols=106 Identities=28% Similarity=0.357 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++..++.+++.+++|+|+|+.|++.++++....+ +.+...+...++..+++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccCCCccEEE
Confidence 456799999999999999988776655556799999999999999988765433 5566666666555567999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++.+++|++ +++...+++++.++++ |.+++
T Consensus 135 ~~~~lhh~~----------d~~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 135 SNHFLHHLD----------DAEVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred ECCeeecCC----------hHHHHHHHHHHHHhcC--eeEEE
Confidence 999999997 2235679999999998 44444
No 79
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=2.2e-14 Score=109.91 Aligned_cols=114 Identities=22% Similarity=0.184 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+...+++.+. ..++.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++++..+.. ++.++..|+..
T Consensus 7 ~~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 80 (124)
T TIGR02469 7 VRALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVP----NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPE 80 (124)
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCC----CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccc
Confidence 3444555553 44567999999999999999988765 369999999999999999998887753 58888888764
Q ss_pred C-CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 182 L-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 182 ~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
. +...++||.|++..... ....+++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~~~~D~v~~~~~~~---------------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 81 ALEDSLPEPDRVFIGGSGG---------------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cChhhcCCCCEEEECCcch---------------hHHHHHHHHHHHcCCCCEEEEE
Confidence 2 22246899999975432 3458899999999999999874
No 80
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.61 E-value=8.9e-15 Score=127.63 Aligned_cols=135 Identities=22% Similarity=0.351 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+.-.+++... .++.+|||+|||||.+++..++.- ..+|+|+|+++.+++.|++|++.|++.+++.+. ...
T Consensus 149 ~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klG-----A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~ 219 (295)
T PF06325_consen 149 RLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLG-----AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSE 219 (295)
T ss_dssp HHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTT-----BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTS
T ss_pred HHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcC-----CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eec
Confidence 34444444442 456799999999999998887652 248999999999999999999999998766553 222
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~ 258 (293)
+ ...++||+|++|-... -...+...+.++|+|||.+++++.. +.+++.+.+++ ||..++.
T Consensus 220 ~--~~~~~~dlvvANI~~~---------------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 220 D--LVEGKFDLVVANILAD---------------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp C--TCCS-EEEEEEES-HH---------------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred c--cccccCCEEEECCCHH---------------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 2 2348899999996544 3346778889999999999997654 44568888866 9998776
Q ss_pred eeee
Q 022698 259 SERV 262 (293)
Q Consensus 259 ~~~~ 262 (293)
..+-
T Consensus 282 ~~~~ 285 (295)
T PF06325_consen 282 REEG 285 (295)
T ss_dssp EEET
T ss_pred EEEC
Confidence 6543
No 81
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.61 E-value=1.8e-14 Score=121.53 Aligned_cols=116 Identities=20% Similarity=0.150 Sum_probs=92.5
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||+|||+|..+..+++..+. ..+|+++|+++.+++.|+++++..++ ++++++.+
T Consensus 61 ~~p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~---~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~ 135 (215)
T TIGR00080 61 SAPHMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVG 135 (215)
T ss_pred chHHHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEEC
Confidence 45556677777664 567889999999999999988887542 24799999999999999999999887 56999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|..+......+||+|+++.+...++ +.+.+.|+|||++++.
T Consensus 136 d~~~~~~~~~~fD~Ii~~~~~~~~~------------------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DGTQGWEPLAPYDRIYVTAAGPKIP------------------EALIDQLKEGGILVMP 176 (215)
T ss_pred CcccCCcccCCCCEEEEcCCccccc------------------HHHHHhcCcCcEEEEE
Confidence 9977543346899999986654433 3467889999998874
No 82
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.61 E-value=1.9e-14 Score=126.46 Aligned_cols=124 Identities=20% Similarity=0.303 Sum_probs=95.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.+++|+..+++..++.+...+... ...++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g----~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G----AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEE
Confidence 35689999999999999877653 2 358999999999999999999999887677777776433 2356899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+|.... ....+++++.++|||||.+++++.. +.+++.+.+++. |..+++.+
T Consensus 231 an~~~~---------------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 231 ANILAE---------------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred EecCHH---------------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeEec
Confidence 986533 3457889999999999999997654 344566777665 87666543
No 83
>PRK06922 hypothetical protein; Provisional
Probab=99.60 E-value=1.1e-14 Score=137.18 Aligned_cols=120 Identities=22% Similarity=0.302 Sum_probs=93.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCccc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFD 190 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD 190 (293)
..++.+|||+|||+|..+..+++..+ +.+++|+|+|+.|++.|+++....+ .++.++++|..+++ +++++||
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P----~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETE----DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEE
Confidence 34578999999999999988887765 5799999999999999998876554 34788999998876 6678999
Q ss_pred EEEecchhhhhcc-ccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 191 VVVSAAFFHTVGK-EYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 191 ~Iv~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+|++++++|++.. .+.....-...+...+++++.++|||||.+++.+.
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999986521 00000000123778999999999999999999764
No 84
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.60 E-value=1.7e-14 Score=116.17 Aligned_cols=107 Identities=23% Similarity=0.373 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceE-EEEcCCCCCC-CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT-AREGDVRSLP-FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~I 192 (293)
....|||+|||+|..- +.++- .+..+|+++|.++.|-+.+.+.++.+.. .++. |+.++.++++ ++++++|+|
T Consensus 76 ~K~~vLEvgcGtG~Nf----kfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANF----KFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred CccceEEecccCCCCc----ccccC-CCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeE
Confidence 3346899999999874 33331 1367999999999999999999988753 4465 9999999988 789999999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
|+..++.... ++.+.++++.++|+|||+++++++.
T Consensus 150 V~TlvLCSve------------~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 150 VCTLVLCSVE------------DPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEEEEeccC------------CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9999999888 9999999999999999999997754
No 85
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.60 E-value=2.7e-14 Score=122.63 Aligned_cols=137 Identities=24% Similarity=0.289 Sum_probs=104.6
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.+..++.++ .+++|||||||+|..+..++..-+ ..|+|+|.++....+.+...+..+....+.++..-+.++|.
T Consensus 106 rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA-----~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~ 179 (315)
T PF08003_consen 106 RLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGA-----KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN 179 (315)
T ss_pred HHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCC-----CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc
Confidence 355555443 478999999999999988887633 48999999998776655443444433335555456677765
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE----Ec---------------------CC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV----WD---------------------LL 239 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~----~~---------------------~~ 239 (293)
.+.||+|+|..+++|.. +|...+++++..|+|||.|++ ++ ..
T Consensus 180 -~~~FDtVF~MGVLYHrr------------~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiP 246 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRR------------SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIP 246 (315)
T ss_pred -cCCcCEEEEeeehhccC------------CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeC
Confidence 67899999999999998 999999999999999999996 11 12
Q ss_pred CchHHHHHHHHcCCcceEEee
Q 022698 240 HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+.......+++.||+.+++..
T Consensus 247 s~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 247 SVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred CHHHHHHHHHHcCCceEEEec
Confidence 345788899999999999864
No 86
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=2.3e-14 Score=119.86 Aligned_cols=144 Identities=26% Similarity=0.275 Sum_probs=119.7
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.+.....++..+ .+.++.+|+|.|+|||.++..|+..... ..+|+.+|+.++.++.|++|++..++.+++.+...|
T Consensus 79 yPKD~~~I~~~~-gi~pg~rVlEAGtGSG~lt~~La~~vg~---~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D 154 (256)
T COG2519 79 YPKDAGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGP---EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD 154 (256)
T ss_pred cCCCHHHHHHHc-CCCCCCEEEEcccCchHHHHHHHHhhCC---CceEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence 344445555555 3789999999999999999999987654 369999999999999999999999998889999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcce
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDI 256 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~ 256 (293)
+.+...++ .||.|+..- + +|-++++.+...|+|||.++++... +.....+.|++.||..+
T Consensus 155 v~~~~~~~-~vDav~LDm-----p------------~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~i 216 (256)
T COG2519 155 VREGIDEE-DVDAVFLDL-----P------------DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDI 216 (256)
T ss_pred cccccccc-ccCEEEEcC-----C------------ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccch
Confidence 99865444 899999863 3 8889999999999999999886554 55678899999999999
Q ss_pred EEeeeecc
Q 022698 257 RVSERVTA 264 (293)
Q Consensus 257 ~~~~~~~~ 264 (293)
+..+-+..
T Consensus 217 e~~E~l~R 224 (256)
T COG2519 217 EAVETLVR 224 (256)
T ss_pred hhheeeeh
Confidence 88765544
No 87
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.59 E-value=8.4e-14 Score=118.50 Aligned_cols=130 Identities=21% Similarity=0.195 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+..+++.+..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEE
Confidence 45679999999999999888765 347999999999999999998877765678999998432 357899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------CCchHHHHHH
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------LHVPEYVRRL 248 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------~~~~~~~~~l 248 (293)
++.++++.+ .++....++.+.+.+++++.+.+... ....++...+
T Consensus 133 ~~~~l~~~~----------~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 202 (230)
T PRK07580 133 CLDVLIHYP----------QEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRAL 202 (230)
T ss_pred EcchhhcCC----------HHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHH
Confidence 999987766 23667788888887765555443211 1124577788
Q ss_pred HHcCCcceEEeeee
Q 022698 249 QELKMEDIRVSERV 262 (293)
Q Consensus 249 ~~~gf~~~~~~~~~ 262 (293)
.++||+.++.....
T Consensus 203 ~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 203 AAAGFKVVRTERIS 216 (230)
T ss_pred HHCCCceEeeeecc
Confidence 89999877765433
No 88
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.59 E-value=5.7e-14 Score=119.87 Aligned_cols=136 Identities=22% Similarity=0.296 Sum_probs=106.8
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
.+.+...+. ..++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+. .+.+...|+.+.
T Consensus 37 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 107 (233)
T PRK05134 37 LNYIREHAG-GLFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEEL 107 (233)
T ss_pred HHHHHHhcc-CCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHh
Confidence 344444432 346789999999999999877764 35899999999999999998877664 377888888765
Q ss_pred C-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------
Q 022698 183 P-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------------------- 239 (293)
Q Consensus 183 ~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 239 (293)
+ ...++||+|+++.++++.+ ++..+++.+.+.|+|||.+++....
T Consensus 108 ~~~~~~~fD~Ii~~~~l~~~~------------~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (233)
T PRK05134 108 AAEHPGQFDVVTCMEMLEHVP------------DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK 175 (233)
T ss_pred hhhcCCCccEEEEhhHhhccC------------CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc
Confidence 4 2357899999999999887 7888999999999999999875321
Q ss_pred ---------CchHHHHHHHHcCCcceEEe
Q 022698 240 ---------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 ---------~~~~~~~~l~~~gf~~~~~~ 259 (293)
..+++.++++++||+.++..
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 176 GTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred ccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 22458888999999988764
No 89
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.59 E-value=3.9e-14 Score=119.07 Aligned_cols=116 Identities=22% Similarity=0.202 Sum_probs=92.5
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||||||+|..+..+++..+. +.+|+++|+++.+++.++++++..+. .++.++.+
T Consensus 60 ~~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~---~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~g 134 (212)
T PRK13942 60 SAIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGK---SGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVG 134 (212)
T ss_pred CcHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEEC
Confidence 45667777777764 567889999999999999888877542 35999999999999999999998876 46999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|........++||+|++......++ +.+.+.|||||++++.
T Consensus 135 d~~~~~~~~~~fD~I~~~~~~~~~~------------------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 135 DGTLGYEENAPYDRIYVTAAGPDIP------------------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcccCCCcCCCcCEEEECCCcccch------------------HHHHHhhCCCcEEEEE
Confidence 9877544567899999876544332 3466789999998884
No 90
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.58 E-value=2.2e-14 Score=117.20 Aligned_cols=104 Identities=27% Similarity=0.390 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.++||+|||.|..+..|+++ +..|+++|+|+.+++.+++.++..++. ++....|+.+..++ ++||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEE
Confidence 35679999999999999999987 679999999999999999998888875 99999999887664 6899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+.-++++++ .+....+++.+...++|||.+++.
T Consensus 100 st~v~~fL~----------~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMFLQ----------RELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGGS-----------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeccCC----------HHHHHHHHHHHHhhcCCcEEEEEE
Confidence 988888877 236678999999999999998773
No 91
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.58 E-value=2.7e-14 Score=119.16 Aligned_cols=103 Identities=16% Similarity=0.309 Sum_probs=84.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|||+|||+|..+..+++.++ +.+++|+|+|+.|++.|+++.. ++.+.++|+.+ ++++++||+|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~----~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~~sfD~V 109 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKDNFFDLV 109 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCCCCEEEE
Confidence 34567899999999999999887654 4699999999999999987642 26788899887 7778899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+++.+++|++ .++...+++++.+++ ++.+++.+.
T Consensus 110 ~~~~vL~hl~----------p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 110 LTKGVLIHIN----------PDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred EECChhhhCC----------HHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 9999999886 337788999999987 466766543
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.57 E-value=1e-13 Score=115.26 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
.+....++..+ ...++.+|||+|||+|.++..+++..+ +.+++++|+|+.+++.+++|++..+. ++++++.+|+
T Consensus 26 ~~v~~~l~~~l-~~~~~~~VLDiG~G~G~~~~~la~~~~----~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~ 99 (196)
T PRK07402 26 REVRLLLISQL-RLEPDSVLWDIGAGTGTIPVEAGLLCP----KGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSA 99 (196)
T ss_pred HHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECch
Confidence 33333455555 456778999999999999998876544 46999999999999999999988876 4589999998
Q ss_pred CC-CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHc---CC
Q 022698 180 RS-LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQEL---KM 253 (293)
Q Consensus 180 ~~-~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~---gf 253 (293)
.+ ++.....+|.++.... . +...+++++.+.|+|||.+++..... ..+..+.+++. ++
T Consensus 100 ~~~~~~~~~~~d~v~~~~~----~------------~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 163 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEGG----R------------PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNI 163 (196)
T ss_pred HHHHhhCCCCCCEEEEECC----c------------CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCc
Confidence 64 2211234677655321 1 34678999999999999998865432 22344555554 44
Q ss_pred cceEE
Q 022698 254 EDIRV 258 (293)
Q Consensus 254 ~~~~~ 258 (293)
+.+++
T Consensus 164 ~~~~~ 168 (196)
T PRK07402 164 EVVQA 168 (196)
T ss_pred eEEEE
Confidence 44444
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.57 E-value=3.4e-14 Score=121.50 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=96.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
...+|||+|||+|.++..++...+ ..+++++|+|+.|++.++++. +++.++++|+.+.. ...+||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~----~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-~~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK----PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-SNEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-ccCCCcEEEE
Confidence 356899999999999988877643 359999999999999998863 24789999998864 3468999999
Q ss_pred cchhhhhccccCcchhhh------HHH--HHHHHHHHHHcccCCcEEEEE--------cCCCchHHHHHHHHcCCc
Q 022698 195 AAFFHTVGKEYGHRTVEA------AAE--RMRVLGEMVRVLKPGGVGVVW--------DLLHVPEYVRRLQELKME 254 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~------~~~--~~~~l~~~~~~LkpgG~l~~~--------~~~~~~~~~~~l~~~gf~ 254 (293)
|||+++.+.+........ .+. ...+++....+|+|+|.++++ ......++..+++++||.
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 999998653322111110 011 357788888999999987662 123456899999999986
No 94
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.56 E-value=1.5e-13 Score=116.52 Aligned_cols=127 Identities=23% Similarity=0.299 Sum_probs=103.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC-CCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG-DNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Iv 193 (293)
.+.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+.. ++.+...|+.+.+.. .++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEE
Confidence 4679999999999998877764 247999999999999999988876642 488888888776533 37899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-------------------------------Cch
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-------------------------------HVP 242 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------------------~~~ 242 (293)
++..+++.. ++..+++++.+.|+|||.+++.... ...
T Consensus 118 ~~~~l~~~~------------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (224)
T TIGR01983 118 CMEVLEHVP------------DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPS 185 (224)
T ss_pred ehhHHHhCC------------CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHH
Confidence 999999887 8889999999999999998874321 123
Q ss_pred HHHHHHHHcCCcceEEee
Q 022698 243 EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 243 ~~~~~l~~~gf~~~~~~~ 260 (293)
++.+.++++||+.+++..
T Consensus 186 ~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 186 ELTSWLESAGLRVKDVKG 203 (224)
T ss_pred HHHHHHHHcCCeeeeeee
Confidence 577889999999887654
No 95
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.56 E-value=6.1e-14 Score=130.51 Aligned_cols=147 Identities=19% Similarity=0.200 Sum_probs=107.3
Q ss_pred ccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 89 GNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 89 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
..|+..+....+.+.+.+++.+. ..++.+|||+|||+|.+++.+++.. .+|+|+|+|+.|++.|++|++.+++
T Consensus 272 ~~F~q~n~~~~e~l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~------~~V~gvD~s~~al~~A~~n~~~~~~ 344 (443)
T PRK13168 272 RDFIQVNAQVNQKMVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA------AEVVGVEGVEAMVERARENARRNGL 344 (443)
T ss_pred CCeEEcCHHHHHHHHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC------CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 34554444455667777776664 3566799999999999999988763 4899999999999999999998887
Q ss_pred CCceEEEEcCCCCC----CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-CCCchH
Q 022698 169 QEYVTAREGDVRSL----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-LLHVPE 243 (293)
Q Consensus 169 ~~~v~~~~~d~~~~----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~ 243 (293)
++++++++|+.+. ++.+++||+|+++||+.... ..++.+.+ ++|++++++++ ..+...
T Consensus 345 -~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~---------------~~~~~l~~-~~~~~ivyvSCnp~tlaR 407 (443)
T PRK13168 345 -DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA---------------EVMQALAK-LGPKRIVYVSCNPATLAR 407 (443)
T ss_pred -CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH---------------HHHHHHHh-cCCCeEEEEEeChHHhhc
Confidence 4599999998652 23346799999999986543 34454544 68999888854 333333
Q ss_pred HHHHHHHcCCcceEEe
Q 022698 244 YVRRLQELKMEDIRVS 259 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~ 259 (293)
-...|.+.||+..++.
T Consensus 408 Dl~~L~~~gY~l~~i~ 423 (443)
T PRK13168 408 DAGVLVEAGYRLKRAG 423 (443)
T ss_pred cHHHHhhCCcEEEEEE
Confidence 4456668899866554
No 96
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.55 E-value=2.2e-13 Score=120.15 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=112.7
Q ss_pred cchHHHHHHHHHhcCC-----C--CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-CC
Q 022698 97 PLHYDMAQRMVGSVND-----W--STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-GV 168 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~-----~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~~ 168 (293)
+..-..+.++.+.+.. . ....++||||||+|++...++...+ +++++|+|+++.+++.|++|++.+ ++
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~----~~~~~atDId~~Al~~A~~Nv~~Np~l 164 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY----GWRFVGSDIDPQALASAQAIISANPGL 164 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHHhccCC
Confidence 4445555555555432 1 1356899999999999988877654 579999999999999999999999 78
Q ss_pred CCceEEEE-cCCCCCC----CCCCcccEEEecchhhhhccccCcchhhhHHHHH---------HHHHHHHHcccCCcEEE
Q 022698 169 QEYVTARE-GDVRSLP----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERM---------RVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 169 ~~~v~~~~-~d~~~~~----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~LkpgG~l~ 234 (293)
.+++.++. .|..... .+.++||+|+|||||+.-..+..........+.. .+=....+++.+||.+-
T Consensus 165 ~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~ 244 (321)
T PRK11727 165 NGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVA 244 (321)
T ss_pred cCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEee
Confidence 88888864 3332221 1356899999999998655321100000000000 00011234455677665
Q ss_pred EEc----------------------CCCchHHHHHHHHcCCcceEEeeeeccceecceeeeee
Q 022698 235 VWD----------------------LLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 235 ~~~----------------------~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
++. ....+.+.+.|++.|...+.+.+...|.. .++++.+.
T Consensus 245 fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~-~~~~vaWs 306 (321)
T PRK11727 245 FIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQK-QSRFIAWT 306 (321)
T ss_pred eehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCCCe-eeEEEEee
Confidence 532 23457899999999999999999888865 23444433
No 97
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.55 E-value=1e-13 Score=126.22 Aligned_cols=111 Identities=27% Similarity=0.383 Sum_probs=89.8
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+. ..++.+|||||||+|..+..+++.. +++|+|+|+|+.+++.++++.+ +. .+++...|..++
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-----g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l- 225 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-----GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL- 225 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc-
Confidence 34444443 5677899999999999998888754 3699999999999999998874 32 278888888764
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+++||.|+++..+++++ ..++..+++++.++|||||.+++..
T Consensus 226 --~~~fD~Ivs~~~~ehvg----------~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 226 --NGQFDRIVSVGMFEHVG----------PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --CCCCCEEEEeCchhhCC----------hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 46899999999998886 2367789999999999999998843
No 98
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.53 E-value=5.1e-13 Score=118.08 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCC--CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC----CCceE
Q 022698 100 YDMAQRMVGSVNDW--STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV----QEYVT 173 (293)
Q Consensus 100 ~~~~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~----~~~v~ 173 (293)
....+.+++.+... .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++++..+. ..++.
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~ 200 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPK 200 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcccccccccceE
Confidence 34455555554321 24679999999999999988865 45999999999999999999876421 13478
Q ss_pred EEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC---------------
Q 022698 174 AREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL--------------- 238 (293)
Q Consensus 174 ~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--------------- 238 (293)
|...|+.++ +++||+|+|..+++|.+ .+....+++.+.+ +.+||.++....
T Consensus 201 f~~~Dl~~l---~~~fD~Vv~~~vL~H~p----------~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~ 266 (315)
T PLN02585 201 FEANDLESL---SGKYDTVTCLDVLIHYP----------QDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELF 266 (315)
T ss_pred EEEcchhhc---CCCcCEEEEcCEEEecC----------HHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhc
Confidence 888887653 47899999999988876 2234456666664 456665543211
Q ss_pred -----------CCchHHHHHHHHcCCcceEEe
Q 022698 239 -----------LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 239 -----------~~~~~~~~~l~~~gf~~~~~~ 259 (293)
...+++.++++++||+..+..
T Consensus 267 ~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 267 PGPSKATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred CCCCcCceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 024578888899999866543
No 99
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.53 E-value=1.3e-13 Score=115.66 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-----------CCCCceEEEEcCCCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-----------GVQEYVTAREGDVRSL 182 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~~ 182 (293)
.++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+..... .-..++++.++|+.++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 35679999999999999999875 679999999999999764322110 0023589999999887
Q ss_pred CCC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 183 PFG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 183 ~~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+.. .++||.|+....+++++ .+....+++.+.++|||||.++++
T Consensus 107 ~~~~~~~fD~i~D~~~~~~l~----------~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 107 TAADLGPVDAVYDRAALIALP----------EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CcccCCCcCEEEechhhccCC----------HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 532 46799999998888887 346778999999999999986653
No 100
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.53 E-value=2.2e-13 Score=128.14 Aligned_cols=134 Identities=22% Similarity=0.251 Sum_probs=102.5
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC--
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-- 181 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-- 181 (293)
..+++.+. ..++.+|||+|||+|..+..+++.. .+++|+|+|+.+++.+++.. +..+++.+++.|+..
T Consensus 27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~------~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~ 96 (475)
T PLN02336 27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA------GQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPD 96 (475)
T ss_pred hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC------CEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccc
Confidence 44555553 2356699999999999999988762 48999999999998765432 223568999999863
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-----------------CchHH
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-----------------HVPEY 244 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------~~~~~ 244 (293)
+++++++||+|+++.++++++ .++...+++++.++|||||++++.+.. ....+
T Consensus 97 ~~~~~~~fD~I~~~~~l~~l~----------~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 166 (475)
T PLN02336 97 LNISDGSVDLIFSNWLLMYLS----------DKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFY 166 (475)
T ss_pred cCCCCCCEEEEehhhhHHhCC----------HHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHH
Confidence 456678999999999999987 234678999999999999999885311 13467
Q ss_pred HHHHHHcCCcceE
Q 022698 245 VRRLQELKMEDIR 257 (293)
Q Consensus 245 ~~~l~~~gf~~~~ 257 (293)
.+++.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 7888888887653
No 101
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.52 E-value=2.3e-13 Score=115.72 Aligned_cols=144 Identities=22% Similarity=0.280 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.....++..+ .+.|+.+|||.|+|+|.++.++++.+.. ..+|+..|+.++..+.|++|++..++.+++.+...|+
T Consensus 26 pkD~~~I~~~l-~i~pG~~VlEaGtGSG~lt~~l~r~v~p---~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 26 PKDISYILMRL-DIRPGSRVLEAGTGSGSLTHALARAVGP---TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHHHHHHHT-T--TT-EEEEE--TTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred CchHHHHHHHc-CCCCCCEEEEecCCcHHHHHHHHHHhCC---CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 34445555555 4789999999999999999999988754 4599999999999999999999999988999999999
Q ss_pred CCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcc-cCCcEEEEEcCC--CchHHHHHHHHcCC
Q 022698 180 RSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVL-KPGGVGVVWDLL--HVPEYVRRLQELKM 253 (293)
Q Consensus 180 ~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~--~~~~~~~~l~~~gf 253 (293)
.+..+. +..+|.|+...| +|-..+..+.+.| +|||++++.... +.....+.|++.||
T Consensus 102 ~~~g~~~~~~~~~DavfLDlp-----------------~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLDLP-----------------DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp GCG--STT-TTSEEEEEEESS-----------------SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred ecccccccccCcccEEEEeCC-----------------CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 653332 367999998643 5667788899999 899999886543 45678889999999
Q ss_pred cceEEeeeecc
Q 022698 254 EDIRVSERVTA 264 (293)
Q Consensus 254 ~~~~~~~~~~~ 264 (293)
..+++.+-+..
T Consensus 165 ~~i~~~Evl~R 175 (247)
T PF08704_consen 165 TDIETVEVLLR 175 (247)
T ss_dssp EEEEEEEEEEE
T ss_pred eeeEEEEEEee
Confidence 99988764443
No 102
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.52 E-value=6e-13 Score=116.60 Aligned_cols=171 Identities=22% Similarity=0.242 Sum_probs=126.5
Q ss_pred cccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 022698 92 FYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171 (293)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~ 171 (293)
|..+....+.+++.++... +..++..|||--||||.+++.+... +++++|+|++..|++-++.|++..++.+.
T Consensus 175 f~~p~s~~P~lAR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~~~ 247 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIEDY 247 (347)
T ss_pred ccCcCCcCHHHHHHHHHHh-ccccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcCce
Confidence 3344556677888777654 4678889999999999999887655 67999999999999999999999887553
Q ss_pred eEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHc
Q 022698 172 VTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQEL 251 (293)
Q Consensus 172 v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~ 251 (293)
.....+|+..+|+++.++|.|++.|||.-...-.+.. -.+=..++++.++++|++||++++... ......+.+.
T Consensus 248 ~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~---l~~Ly~~~le~~~evLk~gG~~vf~~p---~~~~~~~~~~ 321 (347)
T COG1041 248 PVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEG---LDELYEEALESASEVLKPGGRIVFAAP---RDPRHELEEL 321 (347)
T ss_pred eEEEecccccCCCCCCccceEEecCCCCccccccccc---HHHHHHHHHHHHHHHhhcCcEEEEecC---CcchhhHhhc
Confidence 3344449999998887899999999986544211111 112356789999999999999999765 3445566789
Q ss_pred CCcceEEeeeeccceecceeeeee
Q 022698 252 KMEDIRVSERVTAFMVSSHIVSFR 275 (293)
Q Consensus 252 gf~~~~~~~~~~~~~~~~~~~~~~ 275 (293)
||..+.......+......+..++
T Consensus 322 ~f~v~~~~~~~~H~sLtR~i~v~~ 345 (347)
T COG1041 322 GFKVLGRFTMRVHGSLTRVIYVVR 345 (347)
T ss_pred CceEEEEEEEeecCceEEEEEEEe
Confidence 999888776665544333444433
No 103
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.51 E-value=2.9e-13 Score=113.37 Aligned_cols=137 Identities=23% Similarity=0.202 Sum_probs=94.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------C
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------F 184 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~ 184 (293)
..++.+|||+|||+|.++..+++..+. ..+|+|+|+++. ... .++.++++|+.+.+ +
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~---~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGD---KGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLERV 113 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCC---CceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHHh
Confidence 356779999999999999999887642 359999999881 111 34889999998843 4
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHH--cCCcceEEeeee
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQE--LKMEDIRVSERV 262 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~--~gf~~~~~~~~~ 262 (293)
.+++||+|+|+...++.... ..+..........+++++.++|+|||.+++..+. .+++.+.+.+ ..|..+++.++.
T Consensus 114 ~~~~~D~V~S~~~~~~~g~~-~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~-~~~~~~~l~~l~~~f~~v~~~Kp~ 191 (209)
T PRK11188 114 GDSKVQVVMSDMAPNMSGTP-AVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ-GEGFDEYLREIRSLFTKVKVRKPD 191 (209)
T ss_pred CCCCCCEEecCCCCccCCCh-HHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec-CcCHHHHHHHHHhCceEEEEECCc
Confidence 56789999998755443210 0000000001246899999999999999985433 3444444544 479999998888
Q ss_pred ccce
Q 022698 263 TAFM 266 (293)
Q Consensus 263 ~~~~ 266 (293)
....
T Consensus 192 ssr~ 195 (209)
T PRK11188 192 SSRA 195 (209)
T ss_pred cccc
Confidence 7755
No 104
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.51 E-value=2.9e-13 Score=132.31 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC-CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP-FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~fD~I 192 (293)
++.+|||+|||+|.+++.+++.- ..+|+++|+|+.+++.+++|++.+++. .+++++++|+.+.. ...++||+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-----a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlI 612 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-----AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLI 612 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEE
Confidence 46799999999999999988641 247999999999999999999999886 57999999987631 114689999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-CchHHHHHHHHcCCcceEEeeeecc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL-HVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
+++||+..... .....+....+...++..+.++|+|||.+++.... +.....+.+.+.|+....+.....+
T Consensus 613 ilDPP~f~~~~-~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 613 FIDPPTFSNSK-RMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAKTLP 684 (702)
T ss_pred EECCCCCCCCC-ccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecCCCC
Confidence 99999754321 11122333456778889999999999999885443 3444577888889886655543333
No 105
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.50 E-value=1.9e-13 Score=119.39 Aligned_cols=98 Identities=28% Similarity=0.406 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+..+|||+|||+|..+..+++.++..+ ...++|+|+|+.|++.|+++. +++.+.++|+.++|+++++||+|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~-~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEIT-TMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhccccc-CCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence 456899999999999999988765322 247999999999999987652 3478999999998888889999998
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.. + ..++++.|+|||||.++++..
T Consensus 158 ~~~----~---------------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 158 IYA----P---------------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ecC----C---------------CCHHHHHhhccCCCEEEEEeC
Confidence 632 1 234678999999999998754
No 106
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8.5e-13 Score=104.35 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=111.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
..-++|||||||..+.+|++.+. +++.+.++|+||.|++...+.++.|+.. +..++.|+... +..++.|+++.|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~---~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~-l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG---PQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSG-LRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC---CCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhh-hccCCccEEEEC
Confidence 56799999999999999998765 3678999999999999999999988754 78899998773 445899999999
Q ss_pred chhhhhccccC--------cch-hhhHHHHHHHHHHHHHcccCCcEEEEEc--CCCchHHHHHHHHcCCcceEEeeeecc
Q 022698 196 AFFHTVGKEYG--------HRT-VEAAAERMRVLGEMVRVLKPGGVGVVWD--LLHVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 196 ~~~~~~~~~~~--------~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
|||-..++++- +.+ ....+-...++.++-..|.|.|+++++. ....+++...+++.||......++-.+
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~ 197 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQRKAG 197 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEEecC
Confidence 99977665432 111 1112234568888889999999998854 445678999999999987666554444
No 107
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.50 E-value=6.2e-13 Score=115.46 Aligned_cols=125 Identities=21% Similarity=0.197 Sum_probs=94.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+|||+|||+|..+..+++.+... ..|+++|+++.+++.+++|++.+++. ++.+...|...++...++||.
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~---g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNE---GAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCC---CEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCE
Confidence 45677899999999999999998876532 48999999999999999999999874 589999998776544567999
Q ss_pred EEecchhhhhcc---ccCc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 192 VVSAAFFHTVGK---EYGH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 192 Iv~~~~~~~~~~---~~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|++++|...... ++.. ....-.....++++.+.++|||||+++++.+..
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999988653321 1110 000011133568999999999999999876654
No 108
>PTZ00146 fibrillarin; Provisional
Probab=99.49 E-value=1.7e-12 Score=112.36 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=101.2
Q ss_pred cchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 97 PLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+....++..++.-+. .+.++.+|||+|||+|.++.+++..... ..+|+++|+|+.+++.+.+.+... .++.+
T Consensus 112 p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~---~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~ 185 (293)
T PTZ00146 112 PFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGP---EGVVYAVEFSHRSGRDLTNMAKKR---PNIVP 185 (293)
T ss_pred CcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECcHHHHHHHHHHhhhc---CCCEE
Confidence 455667766654443 2467889999999999999999988743 248999999998776555554432 34788
Q ss_pred EEcCCCCC---CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE-E-----cCCCch-HH
Q 022698 175 REGDVRSL---PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV-W-----DLLHVP-EY 244 (293)
Q Consensus 175 ~~~d~~~~---~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~-----~~~~~~-~~ 244 (293)
+..|+... .....+||+|+++... + ++...++.++.+.|||||.+++ + +....+ +.
T Consensus 186 I~~Da~~p~~y~~~~~~vDvV~~Dva~---p-----------dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~ 251 (293)
T PTZ00146 186 IIEDARYPQKYRMLVPMVDVIFADVAQ---P-----------DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVV 251 (293)
T ss_pred EECCccChhhhhcccCCCCEEEEeCCC---c-----------chHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHH
Confidence 89998642 1123579999997631 2 1445667789999999999988 2 222222 22
Q ss_pred ----HHHHHHcCCcceEEee
Q 022698 245 ----VRRLQELKMEDIRVSE 260 (293)
Q Consensus 245 ----~~~l~~~gf~~~~~~~ 260 (293)
.+.|+++||+.++...
T Consensus 252 f~~ev~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 252 FASEVQKLKKEGLKPKEQLT 271 (293)
T ss_pred HHHHHHHHHHcCCceEEEEe
Confidence 4778999999887764
No 109
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.4e-13 Score=108.54 Aligned_cols=113 Identities=26% Similarity=0.302 Sum_probs=94.4
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||||||+|..+..+++.. .+|+.+|+.+...+.|++|++..|..+ |.+.++
T Consensus 56 s~P~~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~------~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~g 127 (209)
T COG2518 56 SAPHMVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLV------GRVVSIERIEELAEQARRNLETLGYEN-VTVRHG 127 (209)
T ss_pred cCcHHHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHh------CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEEC
Confidence 44557777777775 6788999999999999999888764 399999999999999999999999854 999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|....-.+..+||.|++......+| +.+.+.|++||++++.
T Consensus 128 DG~~G~~~~aPyD~I~Vtaaa~~vP------------------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 128 DGSKGWPEEAPYDRIIVTAAAPEVP------------------EALLDQLKPGGRLVIP 168 (209)
T ss_pred CcccCCCCCCCcCEEEEeeccCCCC------------------HHHHHhcccCCEEEEE
Confidence 9987433457899999998877776 3467789999999883
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.49 E-value=8.9e-13 Score=110.90 Aligned_cols=113 Identities=24% Similarity=0.236 Sum_probs=88.3
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. ..++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++++..++. ++.+..+
T Consensus 62 ~~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~ 133 (212)
T PRK00312 62 SQPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHG 133 (212)
T ss_pred CcHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEEC
Confidence 45666677776654 4677899999999999998776653 38999999999999999999988764 4899999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|..+.....++||+|+++.+...++ +.+.+.|+|||.+++.
T Consensus 134 d~~~~~~~~~~fD~I~~~~~~~~~~------------------~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 134 DGWKGWPAYAPFDRILVTAAAPEIP------------------RALLEQLKEGGILVAP 174 (212)
T ss_pred CcccCCCcCCCcCEEEEccCchhhh------------------HHHHHhcCCCcEEEEE
Confidence 9866322347899999987654433 3467899999999884
No 111
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=8.6e-13 Score=122.02 Aligned_cols=125 Identities=16% Similarity=0.213 Sum_probs=95.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCccc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFD 190 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD 190 (293)
...++.+|||+|||+|..+.+++..... +.+|+++|+|+.+++.+++|+++.|+. ++.+.+.|+..++ ...++||
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKD---QGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCC
Confidence 4567789999999999999999987643 359999999999999999999999874 5899999998765 3356899
Q ss_pred EEEecchhhhhccc---cCcc-------hhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 191 VVVSAAFFHTVGKE---YGHR-------TVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~---~~~~-------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
.|++++|+...... +... ...-.....+++.++.+.|||||.++++.+..
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99999887544321 1100 00011234568999999999999999876654
No 112
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.48 E-value=1.6e-12 Score=106.22 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=103.4
Q ss_pred ccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCC-----CcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 93 YSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGS-----LGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-----~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
..+.++.+.++..++.... +.++..|||..||+|++.+..+.......+ ..+++|+|+++.+++.+++|++..+
T Consensus 7 ~~~a~L~~~lA~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 7 FGPAPLRPTLAAALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp SSSTSS-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 3445678888888887664 577889999999999999988776553210 1248999999999999999999999
Q ss_pred CCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHH
Q 022698 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRR 247 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 247 (293)
+...+.+.+.|+.++++.++++|.||+||||...-.. ......-...+++++.++|++...+++.. ...+...
T Consensus 86 ~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~----~~~~~~ly~~~~~~~~~~l~~~~v~l~~~---~~~~~~~ 158 (179)
T PF01170_consen 86 VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGS----KKDLEKLYRQFLRELKRVLKPRAVFLTTS---NRELEKA 158 (179)
T ss_dssp -CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCH----HHHHHHHHHHHHHHHHCHSTTCEEEEEES---CCCHHHH
T ss_pred cCCceEEEecchhhcccccCCCCEEEECcchhhhccC----HHHHHHHHHHHHHHHHHHCCCCEEEEEEC---CHHHHHH
Confidence 8888999999999988667899999999999653210 00011123467788889999944444443 3345566
Q ss_pred HHHcCCcce
Q 022698 248 LQELKMEDI 256 (293)
Q Consensus 248 l~~~gf~~~ 256 (293)
+...++...
T Consensus 159 ~~~~~~~~~ 167 (179)
T PF01170_consen 159 LGLKGWRKR 167 (179)
T ss_dssp HTSTTSEEE
T ss_pred hcchhhceE
Confidence 666655443
No 113
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.48 E-value=3.9e-13 Score=112.04 Aligned_cols=116 Identities=23% Similarity=0.275 Sum_probs=89.4
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
..+.+...+++.+. +.++.+|||||||+|..+..++....+ ..+|+++|+.+...+.|+++++..+. .++.++.+
T Consensus 56 s~P~~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~---~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~g 130 (209)
T PF01135_consen 56 SAPSMVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGP---VGRVVSVERDPELAERARRNLARLGI-DNVEVVVG 130 (209)
T ss_dssp --HHHHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHST---TEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES
T ss_pred hHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCc---cceEEEECccHHHHHHHHHHHHHhcc-CceeEEEc
Confidence 55678888888886 788999999999999999999877653 34899999999999999999999886 46999999
Q ss_pred CCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 178 DVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 178 d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|.........+||.|+++......+ ..+.+.|++||+|++.
T Consensus 131 dg~~g~~~~apfD~I~v~~a~~~ip------------------~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 131 DGSEGWPEEAPFDRIIVTAAVPEIP------------------EALLEQLKPGGRLVAP 171 (209)
T ss_dssp -GGGTTGGG-SEEEEEESSBBSS--------------------HHHHHTEEEEEEEEEE
T ss_pred chhhccccCCCcCEEEEeeccchHH------------------HHHHHhcCCCcEEEEE
Confidence 9876433457899999987776554 3366789999999883
No 114
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.47 E-value=4e-12 Score=107.05 Aligned_cols=160 Identities=21% Similarity=0.281 Sum_probs=104.6
Q ss_pred hhhhHHhhhccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhccccc
Q 022698 13 EWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAGNFF 92 (293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~f~ 92 (293)
.-++.|..-+.+.+.++++.+.+.+..+.++.++... .++..... |.++
T Consensus 23 ~ET~~FL~~S~e~S~~~~~ql~~~l~~~~L~~f~S~T--~iNG~LgR--------------G~MF--------------- 71 (265)
T PF05219_consen 23 EETQEFLDRSYEKSDWFFTQLWHSLASSILSWFMSKT--DINGILGR--------------GSMF--------------- 71 (265)
T ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHhHH--hHhhhhcC--------------CcEE---------------
Confidence 3455566666666666777777777655554444432 22222211 2222
Q ss_pred ccCccchHHHHHHHHHhcC-CC---CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 93 YSAVPLHYDMAQRMVGSVN-DW---STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~-~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
..+.+..+.++..-. .. ....++||||+|.|..+..++..+. +|+++|.|+.|.... +..|.
T Consensus 72 ----vfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~------~v~aTE~S~~Mr~rL----~~kg~ 137 (265)
T PF05219_consen 72 ----VFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK------EVYATEASPPMRWRL----SKKGF 137 (265)
T ss_pred ----EecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc------eEEeecCCHHHHHHH----HhCCC
Confidence 133334444444321 11 1356899999999999999998865 899999999975444 44443
Q ss_pred CCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 169 QEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 169 ~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.++ |..+....+.+||+|.|.+++.... +|..+++.+++.|+|+|++++
T Consensus 138 ----~vl--~~~~w~~~~~~fDvIscLNvLDRc~------------~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 138 ----TVL--DIDDWQQTDFKFDVISCLNVLDRCD------------RPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred ----eEE--ehhhhhccCCceEEEeehhhhhccC------------CHHHHHHHHHHHhCCCCEEEE
Confidence 232 2223332356899999999999887 899999999999999999987
No 115
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.47 E-value=1.4e-13 Score=112.57 Aligned_cols=153 Identities=21% Similarity=0.304 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+.+.+.++..... .+-.++||+|||||-.+..+-... .+++|+|||++|++.|.+. +..+ .+.+.+.
T Consensus 111 P~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea 177 (287)
T COG4976 111 PELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEK----GLYD--TLYVAEA 177 (287)
T ss_pred HHHHHHHHHhccC-CccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhc----cchH--HHHHHHH
Confidence 4455566655542 346799999999999998876653 3899999999999888765 2221 2333443
Q ss_pred CCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----------------CCc
Q 022698 180 RSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL----------------LHV 241 (293)
Q Consensus 180 ~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----------------~~~ 241 (293)
..+. ....+||+|++..++.++. +...++.-+...|+|||.+.|+.. .+.
T Consensus 178 ~~Fl~~~~~er~DLi~AaDVl~YlG------------~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~ 245 (287)
T COG4976 178 VLFLEDLTQERFDLIVAADVLPYLG------------ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHS 245 (287)
T ss_pred HHHhhhccCCcccchhhhhHHHhhc------------chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccc
Confidence 3221 3457899999999999988 888999999999999999998421 122
Q ss_pred -hHHHHHHHHcCCcceEEee----eeccceecceeeeeecC
Q 022698 242 -PEYVRRLQELKMEDIRVSE----RVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 242 -~~~~~~l~~~gf~~~~~~~----~~~~~~~~~~~~~~~~~ 277 (293)
+.+...+...||+.+++++ ...+.+.+...+.++|+
T Consensus 246 ~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~ 286 (287)
T COG4976 246 ESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKK 286 (287)
T ss_pred hHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence 3467778899999998854 23344444555555554
No 116
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=7.9e-13 Score=122.71 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=105.4
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
++......+...+ ...++.+|||+|||+|..+..+++.... .++|+++|+++.+++.+++|++..|+. ++.+++.
T Consensus 236 ~qd~~s~l~~~~l-~~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~ 310 (434)
T PRK14901 236 VQDRSAQLVAPLL-DPQPGEVILDACAAPGGKTTHIAELMGD---QGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAA 310 (434)
T ss_pred EECHHHHHHHHHh-CCCCcCEEEEeCCCCchhHHHHHHHhCC---CceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 3343344444444 3466789999999999999999987643 359999999999999999999999875 4999999
Q ss_pred CCCCCC----CCCCcccEEEecchhhhhcc---ccCcch-------hhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch-
Q 022698 178 DVRSLP----FGDNYFDVVVSAAFFHTVGK---EYGHRT-------VEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP- 242 (293)
Q Consensus 178 d~~~~~----~~~~~fD~Iv~~~~~~~~~~---~~~~~~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~- 242 (293)
|+.+++ ...++||.|++++|...... .+...- ..-.....+++.++.+.|||||.++++++...+
T Consensus 311 D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~ 390 (434)
T PRK14901 311 DSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA 390 (434)
T ss_pred ChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 998764 33568999999877532211 111000 000112467899999999999999887654422
Q ss_pred ----HHHHHHHHc-CCc
Q 022698 243 ----EYVRRLQEL-KME 254 (293)
Q Consensus 243 ----~~~~~l~~~-gf~ 254 (293)
.+...+++. +|+
T Consensus 391 Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 391 ENEAQIEQFLARHPDWK 407 (434)
T ss_pred hHHHHHHHHHHhCCCcE
Confidence 244455555 454
No 117
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.47 E-value=1.3e-12 Score=115.50 Aligned_cols=109 Identities=13% Similarity=0.108 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-CCCCC----c
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-PFGDN----Y 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~----~ 188 (293)
.++.+|||+|||+|..+..+++.+++ +.+++++|+|++|++.+++++......-++.++++|+.+. +.... .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCC
Confidence 35578999999999999999988753 2589999999999999998876543223477889998763 33222 2
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
..++++...+++++ .++...+++++++.|+|||.+++
T Consensus 139 ~~~~~~gs~~~~~~----------~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 139 RLGFFPGSTIGNFT----------PEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred eEEEEecccccCCC----------HHHHHHHHHHHHHhcCCCCEEEE
Confidence 33444456666665 34778999999999999999987
No 118
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=1e-12 Score=121.66 Aligned_cols=135 Identities=21% Similarity=0.172 Sum_probs=97.3
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG 177 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~ 177 (293)
+++.-...+...+ ...++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.+++|++.++.. +.++++
T Consensus 228 iQd~~s~~~~~~l-~~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~ 300 (427)
T PRK10901 228 VQDAAAQLAATLL-APQNGERVLDACAAPGGKTAHILELAP----QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVG 300 (427)
T ss_pred EECHHHHHHHHHc-CCCCCCEEEEeCCCCChHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEc
Confidence 3343333344444 346778999999999999999988764 359999999999999999999998864 789999
Q ss_pred CCCCCC--CCCCcccEEEecchhhhhcc---ccCc---chhh----hHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 178 DVRSLP--FGDNYFDVVVSAAFFHTVGK---EYGH---RTVE----AAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 178 d~~~~~--~~~~~fD~Iv~~~~~~~~~~---~~~~---~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
|+.+++ +..++||.|++++|+..... .+.. .... -......+++.+.+.|||||.+++..+.
T Consensus 301 D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 301 DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 998753 23567999999988653211 1110 0000 0123457899999999999999987653
No 119
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.46 E-value=6e-13 Score=118.53 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=101.7
Q ss_pred HhhhcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH
Q 022698 84 LFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA 163 (293)
Q Consensus 84 ~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~ 163 (293)
+......||..+....+.+.+.+.+.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+
T Consensus 143 ~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~-~~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 143 LFIRPQSFFQTNPAVAAQLYATARDWVRE-LPPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQSA 215 (315)
T ss_pred EEECCCeeeecCHHHHHHHHHHHHHHHHh-cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHH
Confidence 33344455554444445555555555432 24579999999999999999874 359999999999999999999
Q ss_pred HhcCCCCceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-CCc
Q 022698 164 KMEGVQEYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-LHV 241 (293)
Q Consensus 164 ~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~ 241 (293)
+.+++ ++++|+++|+.++.. ..++||+|+++||...+. ..+++. ...++|++++++.+. ...
T Consensus 216 ~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~--------------~~~~~~-l~~~~~~~ivyvsc~p~t~ 279 (315)
T PRK03522 216 AELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIG--------------KELCDY-LSQMAPRFILYSSCNAQTM 279 (315)
T ss_pred HHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCCCCcc--------------HHHHHH-HHHcCCCeEEEEECCcccc
Confidence 99987 579999999977532 235799999998854332 122222 234678887777443 233
Q ss_pred hHHHHHHHHcCCcceEEe
Q 022698 242 PEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~ 259 (293)
..-...+ .||+..++.
T Consensus 280 ~rd~~~l--~~y~~~~~~ 295 (315)
T PRK03522 280 AKDLAHL--PGYRIERVQ 295 (315)
T ss_pred hhHHhhc--cCcEEEEEE
Confidence 3333344 577755543
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.45 E-value=1.3e-12 Score=120.96 Aligned_cols=137 Identities=20% Similarity=0.155 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
+..-...+...+. ..++.+|||+|||+|..+..+++..+ .++++++|+|+.+++.+++|++..++..++.+..+|
T Consensus 223 Qd~~s~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~----~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d 297 (426)
T TIGR00563 223 QDASAQWVATWLA-PQNEETILDACAAPGGKTTHILELAP----QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGD 297 (426)
T ss_pred ECHHHHHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 3333344444443 46678999999999999999998765 359999999999999999999998875334446677
Q ss_pred CCCCCC--CCCcccEEEecchhhhhcc---ccCc---c----hhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 179 VRSLPF--GDNYFDVVVSAAFFHTVGK---EYGH---R----TVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 179 ~~~~~~--~~~~fD~Iv~~~~~~~~~~---~~~~---~----~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
....+. ..++||.|++++|...... .+.. . ...-.....+++.++.++|||||.++++++..
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 655432 4568999999877543321 1110 0 00111234679999999999999999976654
No 121
>PRK04457 spermidine synthase; Provisional
Probab=99.45 E-value=1.1e-12 Score=113.70 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=98.2
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
...+.++..+....++.+|||||||+|.++..+++..| ..+++++|+++.+++.|++++...+..++++++.+|+.
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~ 127 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP----DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA 127 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH
Confidence 44555544433334567899999999999999988876 56999999999999999999876655567999999986
Q ss_pred CC-CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc---hHHHHHHHHcCCcc
Q 022698 181 SL-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV---PEYVRRLQELKMED 255 (293)
Q Consensus 181 ~~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~l~~~gf~~ 255 (293)
+. ....++||+|+++. ++... . .......++++++.+.|+|||++++.-.... .+..+.+++. |..
T Consensus 128 ~~l~~~~~~yD~I~~D~-~~~~~----~---~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~-F~~ 197 (262)
T PRK04457 128 EYIAVHRHSTDVILVDG-FDGEG----I---IDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESS-FEG 197 (262)
T ss_pred HHHHhCCCCCCEEEEeC-CCCCC----C---ccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHh-cCC
Confidence 53 22235799999873 21110 0 0001236899999999999999988333233 3344555444 653
No 122
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.45 E-value=8.5e-13 Score=118.66 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=89.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC--CCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--PFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~I 192 (293)
.+..+||||||+|.++..+++..| ...++|+|+++.+++.+.+++..+++ +++.++++|+..+ .++++++|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P----~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP----NKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC----CCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEE
Confidence 456899999999999999999876 46999999999999999999998887 4599999998653 3567899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+++.|..|.. ..+.+. ....+++++.++|+|||.+.+..
T Consensus 197 ~lnFPdPW~K-krHRRl-----v~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 197 FVHFPVPWDK-KPHRRV-----ISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EEeCCCCccc-cchhhc-----cHHHHHHHHHHHcCCCcEEEEEE
Confidence 9987654432 111000 12579999999999999998843
No 123
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.45 E-value=7.4e-13 Score=120.72 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC--C--CCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP--F--GDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~--~~~~f 189 (293)
++.+|||+|||+|.+++.++.. + ..+|+++|+|+.+++.+++|++.+++. ++++++++|+.+.. + ..++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-g----a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-G----CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-C----CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 4679999999999998765532 1 359999999999999999999999985 47999999997742 1 24589
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---CchHHHHHHHH
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---HVPEYVRRLQE 250 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~l~~ 250 (293)
|+|+++||+..... ........+...+++.+.++|+|||.++.+++. ..+++.+.+.+
T Consensus 295 DlVilDPP~f~~~k---~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 295 DVIVMDPPKFVENK---SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred CEEEECCCCCCCCh---HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 99999999753321 111222235567777888999999999985543 34455555543
No 124
>PHA03412 putative methyltransferase; Provisional
Probab=99.45 E-value=4.8e-13 Score=112.00 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+.+|||+|||+|.++..+++..+... ..+|+++|+++.+++.|++|.. ++.++..|+...++ +++||+||+|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~-~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~-~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAK-PREIVCVELNHTYYKLGKRIVP------EATWINADALTTEF-DTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCC-CcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccc-cCCccEEEEC
Confidence 56999999999999999987654211 3599999999999999998753 37889999987554 5689999999
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
|||................-...+++.+.+++++|+. ++
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 9998655221111111112355688888886666665 44
No 125
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.45 E-value=2.7e-12 Score=108.03 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-----------CCCCceEEEEcCCCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-----------GVQEYVTAREGDVRSL 182 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-----------~~~~~v~~~~~d~~~~ 182 (293)
.++.+|||+|||.|..+..|+++ +.+|+|+|+|+.+++.+.+..... -...++++.++|+.++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence 45679999999999999999875 679999999999999764321110 0124689999999987
Q ss_pred CCC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 183 PFG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 183 ~~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+.. .+.||.|+....+++++ .+....+++.+.++|+|||.+++
T Consensus 110 ~~~~~~~fd~v~D~~~~~~l~----------~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 110 TAADLADVDAVYDRAALIALP----------EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CcccCCCeeEEEehHhHhhCC----------HHHHHHHHHHHHHHcCCCCeEEE
Confidence 532 35899999998888887 44778899999999999996544
No 126
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.45 E-value=2.7e-12 Score=119.56 Aligned_cols=143 Identities=22% Similarity=0.214 Sum_probs=100.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCccc
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFD 190 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 190 (293)
...++.+|||+|||+|..+..+++.... ..+++++|+++.+++.+++|++.+++.+ +.++++|+.++.. -.++||
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD 322 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKN---TGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAEKFD 322 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhcccCC
Confidence 3456789999999999999999987632 3599999999999999999999998754 9999999987531 126899
Q ss_pred EEEecchhhhhcc---ccCcchhhhH-------HHHHHHHHHHHHcccCCcEEEEEcCCC----chHHH-HHHHHc-CCc
Q 022698 191 VVVSAAFFHTVGK---EYGHRTVEAA-------AERMRVLGEMVRVLKPGGVGVVWDLLH----VPEYV-RRLQEL-KME 254 (293)
Q Consensus 191 ~Iv~~~~~~~~~~---~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~-~~l~~~-gf~ 254 (293)
+|++++|...... .+...-.... .-...+++.+.++|||||.+++..+.. .+... ..+++. +|+
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~ 402 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFE 402 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcE
Confidence 9999988643221 1110000001 123468999999999999999866543 23333 345544 365
Q ss_pred ceEE
Q 022698 255 DIRV 258 (293)
Q Consensus 255 ~~~~ 258 (293)
.+.+
T Consensus 403 ~~~~ 406 (444)
T PRK14902 403 LVPL 406 (444)
T ss_pred Eecc
Confidence 5443
No 127
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.44 E-value=1.2e-12 Score=105.22 Aligned_cols=106 Identities=26% Similarity=0.305 Sum_probs=85.5
Q ss_pred EEEeCCHHHHHHHHHHHHhc--CCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH
Q 022698 147 VGLDCKKRTTLSTLRTAKME--GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV 224 (293)
Q Consensus 147 ~~vDis~~~l~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (293)
+|+|+|++|++.|+++.+.. +...+++++++|+.++|+++++||+|+++..+++++ ++..++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~------------d~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV------------DRLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC------------CHHHHHHHHH
Confidence 48999999999998776532 223469999999999998888999999999999888 8899999999
Q ss_pred HcccCCcEEEEEcCC-------------------------------------------CchHHHHHHHHcCCcceEEeee
Q 022698 225 RVLKPGGVGVVWDLL-------------------------------------------HVPEYVRRLQELKMEDIRVSER 261 (293)
Q Consensus 225 ~~LkpgG~l~~~~~~-------------------------------------------~~~~~~~~l~~~gf~~~~~~~~ 261 (293)
++|||||.+++.+.. ..+++.++|+++||+.++....
T Consensus 69 rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~ 148 (160)
T PLN02232 69 RVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEI 148 (160)
T ss_pred HHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEEC
Confidence 999999999876532 2236777888999998866544
Q ss_pred ecc
Q 022698 262 VTA 264 (293)
Q Consensus 262 ~~~ 264 (293)
..+
T Consensus 149 ~~g 151 (160)
T PLN02232 149 SGG 151 (160)
T ss_pred cch
Confidence 333
No 128
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.44 E-value=6.5e-12 Score=103.64 Aligned_cols=143 Identities=25% Similarity=0.277 Sum_probs=94.9
Q ss_pred cCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 110 VNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 110 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
...+.++.+|||+|||+|.++..+++.... ..+++++|+|+.+ .. +++.+.+.|+.+..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~---~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGG---KGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCC---CceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHH
Confidence 334567889999999999999988877532 3589999999863 11 23778888887632
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC--CchHHHHHHHHcCCcceEEe
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL--HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~l~~~gf~~~~~~ 259 (293)
.+.++||+|+++.+.+... .+.............+++.+.++|+|||.+++.... ...++...++. +|..+++.
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~-~~~~~~~~ 169 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISG-YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK-LFEKVKVT 169 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCC-CccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh-hhceEEEe
Confidence 2456799999975421100 000011111224568899999999999999884322 22355555544 48888888
Q ss_pred eeeccceecc
Q 022698 260 ERVTAFMVSS 269 (293)
Q Consensus 260 ~~~~~~~~~~ 269 (293)
++..+.....
T Consensus 170 ~~~~~~~~~~ 179 (188)
T TIGR00438 170 KPQASRKRSA 179 (188)
T ss_pred CCCCCCcccc
Confidence 8888765443
No 129
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.44 E-value=1.2e-12 Score=121.69 Aligned_cols=148 Identities=18% Similarity=0.239 Sum_probs=103.5
Q ss_pred hcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 87 ~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
+...|+..+......+.+.+.+.+. ..++.+|||+|||+|.+++.+++.. .+|+++|+|+.+++.|++|+..+
T Consensus 265 ~~~~F~Q~N~~~~~~l~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~------~~V~~vE~~~~av~~a~~n~~~~ 337 (431)
T TIGR00479 265 SARDFFQVNSGQNEKLVDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA------KSVVGIEVVPESVEKAQQNAELN 337 (431)
T ss_pred CCCceeecCHHHHHHHHHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC------CEEEEEEcCHHHHHHHHHHHHHh
Confidence 3344554444444556666665553 3556799999999999999988762 48999999999999999999998
Q ss_pred CCCCceEEEEcCCCCC----CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-CCc
Q 022698 167 GVQEYVTAREGDVRSL----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-LHV 241 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~ 241 (293)
++ ++++|+.+|+.+. +..+++||+|+++||...+. ..+++.+.+ ++|++.+++++. .+.
T Consensus 338 ~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~--------------~~~l~~l~~-l~~~~ivyvsc~p~tl 401 (431)
T TIGR00479 338 GI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCA--------------AEVLRTIIE-LKPERIVYVSCNPATL 401 (431)
T ss_pred CC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCC--------------HHHHHHHHh-cCCCEEEEEcCCHHHH
Confidence 87 5699999998652 12345799999998864322 344554443 889888777532 222
Q ss_pred hHHHHHHHHcCCcceE
Q 022698 242 PEYVRRLQELKMEDIR 257 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~ 257 (293)
..-...|.+.||....
T Consensus 402 ard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 402 ARDLEFLCKEGYGITW 417 (431)
T ss_pred HHHHHHHHHCCeeEEE
Confidence 3345566778887443
No 130
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.44 E-value=6.9e-13 Score=109.59 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=104.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----CCCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----PFGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~I 192 (293)
.+|||+|||.|.....+++..+.. +.+++++|.|+.|++..+++..... .++...+.|+... +...+++|.|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~--~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNN--RLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCC--CeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceE
Confidence 389999999999999998876632 3799999999999999998877654 4566667776542 3456899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-------------------------------CCc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-------------------------------LHV 241 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-------------------------------~~~ 241 (293)
++..++..++ .+.....++++.++|||||.+++-|+ ...
T Consensus 149 t~IFvLSAi~----------pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~ 218 (264)
T KOG2361|consen 149 TLIFVLSAIH----------PEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTE 218 (264)
T ss_pred EEEEEEeccC----------hHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccH
Confidence 9999998887 34778899999999999999998553 134
Q ss_pred hHHHHHHHHcCCcceEEe
Q 022698 242 PEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~ 259 (293)
++..+++.++||..++..
T Consensus 219 eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 219 EELDELFTKAGFEEVQLE 236 (264)
T ss_pred HHHHHHHHhcccchhccc
Confidence 578899999999987764
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=3.1e-12 Score=119.09 Aligned_cols=124 Identities=22% Similarity=0.218 Sum_probs=93.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+|||+|||+|..+..+++.... ..+|+++|+|+.+++.++++++..|+. ++.+.+.|+.+++ ++++||+
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~ 321 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQN---RGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDA 321 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCE
Confidence 3456789999999999999999887643 359999999999999999999998874 6899999998764 4568999
Q ss_pred EEecchhhhhcc---ccCcc-------hhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 192 VVSAAFFHTVGK---EYGHR-------TVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 192 Iv~~~~~~~~~~---~~~~~-------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|++.+|...... .+... ...-......++.++.+.|+|||++++.++..
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999877533221 11100 00001234568999999999999999977654
No 132
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.43 E-value=1.8e-12 Score=107.34 Aligned_cols=120 Identities=10% Similarity=0.013 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.+.+.+.++..+....++.+|||+|||+|.+++.++... ..+|+++|+++.+++.+++|++.++. .++.++++|
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-----a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D 110 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-----AAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTN 110 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEch
Confidence 344555566555433456799999999999998655442 25999999999999999999999886 469999999
Q ss_pred CCCC-CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHH--cccCCcEEEEEc
Q 022698 179 VRSL-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR--VLKPGGVGVVWD 237 (293)
Q Consensus 179 ~~~~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~ 237 (293)
+.+. +...++||+|+++|||..- -....++.+.. +|+|+|++++..
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy~~g-------------~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPFRKG-------------LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred HHHHHhhcCCCceEEEECCCCCCC-------------hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 8763 2223569999999997532 22344454543 589999888854
No 133
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.42 E-value=1.9e-12 Score=117.83 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=103.6
Q ss_pred hHhhhcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 83 CLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 83 ~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
.+.+....|+..+....+.+...+.+.+.. .++.+|||+|||+|.+++.++.. +.+|+++|+|+.+++.|++|
T Consensus 202 ~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~-~~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~N 274 (374)
T TIGR02085 202 PLVIRPQSFFQTNPKVAAQLYATARQWVRE-IPVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQS 274 (374)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHHHh-cCCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHHH
Confidence 344445556655555556666555554422 24568999999999999988854 35899999999999999999
Q ss_pred HHhcCCCCceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-CC
Q 022698 163 AKMEGVQEYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-LH 240 (293)
Q Consensus 163 ~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~ 240 (293)
++.+++. +++|.++|+.+... ..++||+|+++||..... ..+++.+. .++|++++++... .+
T Consensus 275 ~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~~--------------~~~l~~l~-~~~p~~ivyvsc~p~T 338 (374)
T TIGR02085 275 AQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPRRGIG--------------KELCDYLS-QMAPKFILYSSCNAQT 338 (374)
T ss_pred HHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCCCCCc--------------HHHHHHHH-hcCCCeEEEEEeCHHH
Confidence 9999874 69999999976421 124699999999975432 24444444 4799988888542 22
Q ss_pred chHHHHHHHHcCCcceEE
Q 022698 241 VPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 241 ~~~~~~~l~~~gf~~~~~ 258 (293)
...-...| .||...++
T Consensus 339 laRDl~~L--~gy~l~~~ 354 (374)
T TIGR02085 339 MAKDIAEL--SGYQIERV 354 (374)
T ss_pred HHHHHHHh--cCceEEEE
Confidence 22222333 68875544
No 134
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.42 E-value=2.1e-12 Score=107.14 Aligned_cols=119 Identities=24% Similarity=0.365 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-C-CCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-L-PFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~I 192 (293)
++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++ + +++++.|+.+ + ++++++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-----QVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-----CCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhcccccCCCCcCEE
Confidence 56799999999999988776542 35789999999998877542 2 5788888865 3 3556789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE---------------------------------cCC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW---------------------------------DLL 239 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~---------------------------------~~~ 239 (293)
+++.++++++ ++..+++++.+.++++. +.+. ...
T Consensus 80 i~~~~l~~~~------------d~~~~l~e~~r~~~~~i-i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (194)
T TIGR02081 80 ILSQTLQATR------------NPEEILDEMLRVGRHAI-VSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFC 146 (194)
T ss_pred EEhhHhHcCc------------CHHHHHHHHHHhCCeEE-EEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccC
Confidence 9999999998 88889999988776532 1110 012
Q ss_pred CchHHHHHHHHcCCcceEEe
Q 022698 240 HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 ~~~~~~~~l~~~gf~~~~~~ 259 (293)
..+++.++++++||+.++..
T Consensus 147 s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 147 TIADFEDLCGELNLRILDRA 166 (194)
T ss_pred cHHHHHHHHHHCCCEEEEEE
Confidence 35678899999999987764
No 135
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.41 E-value=3.1e-12 Score=103.76 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=71.7
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+. ..++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.. .++++++.+|+.+++
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~ 72 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFD 72 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCC
Confidence 34555543 456679999999999999999876 25899999999999999988754 246899999999887
Q ss_pred CCCCcccEEEecchhhhh
Q 022698 184 FGDNYFDVVVSAAFFHTV 201 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~ 201 (293)
+++.+||.|++|+||+..
T Consensus 73 ~~~~~~d~vi~n~Py~~~ 90 (169)
T smart00650 73 LPKLQPYKVVGNLPYNIS 90 (169)
T ss_pred ccccCCCEEEECCCcccH
Confidence 666679999999999753
No 136
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.41 E-value=1.7e-12 Score=110.56 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=88.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-----CCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-----FGD 186 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~ 186 (293)
..+..+|||+|||+|..++.+++.++. +++++++|+++++++.|++|++.+++.++++++.+|+.+. + .+.
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~---~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPE---DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 345679999999999999999887653 3599999999999999999999999988899999999763 1 114
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++||+|+....- .....++..+.+.|+|||.+++-+
T Consensus 143 ~~fD~VfiDa~k---------------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVDADK---------------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEECCCH---------------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 689999987432 145578899999999999988743
No 137
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=108.29 Aligned_cols=116 Identities=22% Similarity=0.347 Sum_probs=83.9
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
..++|+|||+|..++.++.++. +|+|+|+|+.|++.|++.....-......+...++.++.-.+++.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k------~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK------EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh------hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh
Confidence 3799999999988888887754 8999999999999988775433211112333333333322378999999999
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc-EEEEEcCC----CchHHHHHHHHc
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG-VGVVWDLL----HVPEYVRRLQEL 251 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~----~~~~~~~~l~~~ 251 (293)
.+|++ |..++++++.|+||+.| .+.++... ..++....+.+.
T Consensus 109 a~HWF-------------dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~ 155 (261)
T KOG3010|consen 109 AVHWF-------------DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRL 155 (261)
T ss_pred hHHhh-------------chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHH
Confidence 99998 67899999999999876 76665544 345555555444
No 138
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.40 E-value=6.1e-12 Score=111.53 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
.+.+...+++.+. ..++.+|||+|||+|.++..+++..+. ...|+++|+++.+++.|+++++.++. +++.++.+|
T Consensus 65 ~p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~---~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD 139 (322)
T PRK13943 65 QPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGD 139 (322)
T ss_pred cHHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCC
Confidence 4556666666653 456789999999999999999887542 23799999999999999999998886 568999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
..+.....++||+|++.......+ ..+.+.|+|||.+++.
T Consensus 140 ~~~~~~~~~~fD~Ii~~~g~~~ip------------------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 140 GYYGVPEFAPYDVIFVTVGVDEVP------------------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred hhhcccccCCccEEEECCchHHhH------------------HHHHHhcCCCCEEEEE
Confidence 876544446799999975443332 2356789999998874
No 139
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.2e-11 Score=97.49 Aligned_cols=123 Identities=20% Similarity=0.125 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|+|+|||||.+++..+..-+ .+|+|+|+++++++.+++|+.+.+ .++.|+.+|+.+. .+++|.++.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-----~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~---~~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-----SRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDF---RGKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-----cEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhc---CCccceEEE
Confidence 456899999999999988876533 699999999999999999999843 5699999999886 467999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
|||+...... + | ..++..+.+.- ..+.-+.......-+.....++|+......
T Consensus 115 NPPFG~~~rh---a------D-r~Fl~~Ale~s--~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 115 NPPFGSQRRH---A------D-RPFLLKALEIS--DVVYSIHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred CCCCcccccc---C------C-HHHHHHHHHhh--heEEEeeccccHHHHHHHHHhcCCeEEEEE
Confidence 9998654210 0 1 23433333322 122223344444556667788998876664
No 140
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.37 E-value=3.1e-11 Score=98.90 Aligned_cols=141 Identities=17% Similarity=0.177 Sum_probs=105.5
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC--------CCCcc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF--------GDNYF 189 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f 189 (293)
+|||||||||..+.++++.+| .....-.|+++..+...+......+..+-..-+..|+...+. ..++|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP----~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP----HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC----CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 599999999999999999998 468889999999877777766666554333445566655321 23589
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----------------------------Cc
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----------------------------HV 241 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------------------~~ 241 (293)
|.|+|.+.+|..+ ......+++.+.++|++||.|++++.. ..
T Consensus 104 D~i~~~N~lHI~p----------~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~ 173 (204)
T PF06080_consen 104 DAIFCINMLHISP----------WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDI 173 (204)
T ss_pred ceeeehhHHHhcC----------HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCH
Confidence 9999999999887 457788999999999999999997643 12
Q ss_pred hHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 242 PEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 242 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
+++.++..+.|++..+.++.-..+. ++.++|
T Consensus 174 e~v~~lA~~~GL~l~~~~~MPANN~----~Lvfrk 204 (204)
T PF06080_consen 174 EDVEALAAAHGLELEEDIDMPANNL----LLVFRK 204 (204)
T ss_pred HHHHHHHHHCCCccCcccccCCCCe----EEEEeC
Confidence 3666777778888776666555443 555543
No 141
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.34 E-value=1.6e-11 Score=89.81 Aligned_cols=101 Identities=37% Similarity=0.493 Sum_probs=82.1
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~ 196 (293)
+|+|+|||+|..+..+++ .+ ..+++++|+++.++..+++.....+ ..++.+...|..+... ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~----~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GP----GARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CC----CCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 589999999999988876 22 4699999999999998885433332 3568999999987643 457899999999
Q ss_pred hhhh-hccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 197 FFHT-VGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 197 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
++++ .. ....+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~~~------------~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVE------------DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhh------------HHHHHHHHHHHHcCCCCEEEEE
Confidence 9887 44 7789999999999999999875
No 142
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.33 E-value=2e-11 Score=99.52 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=101.9
Q ss_pred chHHHHHHHHHhcCCCCC--CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 98 LHYDMAQRMVGSVNDWST--VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
.+.++.+..++.+. +.+ ..-|||||||+|-.+..+... +...+|+|||+.|++.|.+.--+ -.++
T Consensus 32 IQ~em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~~e~e------gdli 98 (270)
T KOG1541|consen 32 IQAEMAERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVERELE------GDLI 98 (270)
T ss_pred ehHHHHHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHHhhhh------cCee
Confidence 45567777777664 232 457999999999887666543 46899999999999999873211 2467
Q ss_pred EcCCCC-CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHH----HHHH
Q 022698 176 EGDVRS-LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVR----RLQE 250 (293)
Q Consensus 176 ~~d~~~-~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~----~l~~ 250 (293)
.+|+-+ +|+..+.||-+++...+.|+-. .......+......|+..++.+|++|++.++--+...++..+ .-..
T Consensus 99 l~DMG~GlpfrpGtFDg~ISISAvQWLcn-A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~ 177 (270)
T KOG1541|consen 99 LCDMGEGLPFRPGTFDGVISISAVQWLCN-ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMK 177 (270)
T ss_pred eeecCCCCCCCCCccceEEEeeeeeeecc-cCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHh
Confidence 788855 6788999999999877765431 111122223356678999999999999988844444444333 3346
Q ss_pred cCCcceEEee
Q 022698 251 LKMEDIRVSE 260 (293)
Q Consensus 251 ~gf~~~~~~~ 260 (293)
+||..--+..
T Consensus 178 aGF~GGlvVd 187 (270)
T KOG1541|consen 178 AGFGGGLVVD 187 (270)
T ss_pred hccCCceeee
Confidence 7887554443
No 143
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=1.8e-11 Score=101.91 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=93.8
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-cCCCCCC-
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE-GDVRSLP- 183 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~~~- 183 (293)
++..+....+.++|||||++.|..++.++..++. ..+++++|+++++.+.|++|++..|+.+++.++. +|..+.-
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~ 126 (219)
T COG4122 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHH
Confidence 3434434457789999999999999999999885 3599999999999999999999999999898888 4776531
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
...++||+|+...- ..+...+++.+.++|+|||.+++-+..
T Consensus 127 ~~~~~~fDliFIDad---------------K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 127 RLLDGSFDLVFIDAD---------------KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred hccCCCccEEEEeCC---------------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 23589999997532 125568999999999999999985543
No 144
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.30 E-value=1.1e-10 Score=98.15 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=92.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-----------c
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-----------E 166 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-----------~ 166 (293)
.++.+.+++-... ..++.+||..|||.|.-+..|+.+ +.+|+|+|+|+.+++.+.+.... .
T Consensus 28 pnp~L~~~~~~l~--~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~ 99 (226)
T PRK13256 28 PNEFLVKHFSKLN--INDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKL 99 (226)
T ss_pred CCHHHHHHHHhcC--CCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceecccccce
Confidence 4555556554432 235679999999999999999876 56999999999999987652110 0
Q ss_pred CCCCceEEEEcCCCCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 167 GVQEYVTAREGDVRSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
--..++++.++|+.+++.. .++||+|+-...++.++ .+...+..+.+.++|+|||.++++.
T Consensus 100 ~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alp----------p~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 100 YKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALP----------NDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred eccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCC----------HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 0123589999999998532 36899999999999988 4467889999999999999887743
No 145
>PRK00811 spermidine synthase; Provisional
Probab=99.29 E-value=1.3e-11 Score=108.18 Aligned_cols=133 Identities=19% Similarity=0.154 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--C--CCceEEEEcCCCCCC-CCCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--V--QEYVTAREGDVRSLP-FGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~--~~~v~~~~~d~~~~~-~~~~~f 189 (293)
.+.+||+||||+|..+..++++.+ ..+|+++|+++.+++.+++++...+ . .++++++.+|+...- ...++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~----~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPS----VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCC----CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcc
Confidence 467999999999999998886522 3589999999999999999876432 1 467999999987632 235789
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC---CCch---HHHHHHHHcCCcceEEee
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL---LHVP---EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~---~~~~~l~~~gf~~~~~~~ 260 (293)
|+|+++.+-...+ .. .--..++++.+.+.|+|||++++... ...+ ...+.+++. |..+....
T Consensus 152 DvIi~D~~dp~~~---~~-----~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~~ 219 (283)
T PRK00811 152 DVIIVDSTDPVGP---AE-----GLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPYQ 219 (283)
T ss_pred cEEEECCCCCCCc---hh-----hhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEEE
Confidence 9999974321111 00 00236789999999999999887321 1122 234444555 66666543
No 146
>PLN02476 O-methyltransferase
Probab=99.29 E-value=3.4e-11 Score=104.08 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=91.4
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P- 183 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~- 183 (293)
++..+....+.++||||||++|..++.++..++. +.+++++|.++++.+.|+++++..|+.++++++.+|+.+. +
T Consensus 109 lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~---~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 109 LLAMLVQILGAERCIEVGVYTGYSSLAVALVLPE---SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence 3333333455789999999999999999987764 3489999999999999999999999988999999998662 1
Q ss_pred C----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 184 F----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 184 ~----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+ ..++||+|+....- .+...+++.+.++|+|||.+++-
T Consensus 186 l~~~~~~~~FD~VFIDa~K---------------~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADK---------------RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHhcccCCCCCEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 1 13589999987542 26678889999999999999873
No 147
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.29 E-value=4.3e-11 Score=108.47 Aligned_cols=157 Identities=13% Similarity=0.155 Sum_probs=103.8
Q ss_pred hcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 87 ~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
....||..+....+.+.+++.+.+.. .+.++||++||+|.++..+++.. .+|+++|+|+.+++.+++|+..+
T Consensus 180 ~~~sF~Q~N~~~~e~l~~~v~~~~~~--~~~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~ 251 (362)
T PRK05031 180 VENSFTQPNAAVNEKMLEWALDATKG--SKGDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAAN 251 (362)
T ss_pred CCCCeeccCHHHHHHHHHHHHHHhhc--CCCeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHh
Confidence 34556665555666777777766532 23579999999999999888763 38999999999999999999999
Q ss_pred CCCCceEEEEcCCCCCC--CC--------------CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC
Q 022698 167 GVQEYVTAREGDVRSLP--FG--------------DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG 230 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~--~~--------------~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 230 (293)
++. +++|+.+|+.+.- .. ..+||+|+.+||...+. ..+++.+.+ |+
T Consensus 252 ~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~--------------~~~l~~l~~---~~ 313 (362)
T PRK05031 252 GID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLD--------------DETLKLVQA---YE 313 (362)
T ss_pred CCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCc--------------HHHHHHHHc---cC
Confidence 874 6999999986631 10 12589999999964332 344444443 67
Q ss_pred cEEEEEcCC-CchHHHHHHHHcCCcceEEeeeeccceeccee
Q 022698 231 GVGVVWDLL-HVPEYVRRLQELKMEDIRVSERVTAFMVSSHI 271 (293)
Q Consensus 231 G~l~~~~~~-~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 271 (293)
+++|+.+.. +...-...|.+ ||...++. -+.-|+...|+
T Consensus 314 ~ivyvSC~p~tlarDl~~L~~-gY~l~~v~-~~DmFPqT~Hv 353 (362)
T PRK05031 314 RILYISCNPETLCENLETLSQ-THKVERFA-LFDQFPYTHHM 353 (362)
T ss_pred CEEEEEeCHHHHHHHHHHHcC-CcEEEEEE-EcccCCCCCcE
Confidence 777774432 22222334443 88755443 33334433343
No 148
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.28 E-value=3.1e-11 Score=97.54 Aligned_cols=88 Identities=30% Similarity=0.460 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CC-CCCCcccE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LP-FGDNYFDV 191 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~fD~ 191 (293)
.++.+|||+|||.|.+...|.+.. +.+..|+|++++.+..+.++ | +.++++|+.+ ++ +++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-----~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-----QVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-----CCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCccE
Confidence 567899999999999988777652 47999999999977655544 4 6789999976 32 78999999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRV 226 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 226 (293)
||++..+..+. +|..+++++.|+
T Consensus 79 VIlsqtLQ~~~------------~P~~vL~EmlRV 101 (193)
T PF07021_consen 79 VILSQTLQAVR------------RPDEVLEEMLRV 101 (193)
T ss_pred EehHhHHHhHh------------HHHHHHHHHHHh
Confidence 99999999988 899999999776
No 149
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.28 E-value=2.1e-11 Score=100.56 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=82.1
Q ss_pred chHHHHHHHHH-hcCCC--CCCCeEEEEcCCCChHHHHHHHHhhh-----cCCCcEEEEEeCCHHHHHHHHHHH------
Q 022698 98 LHYDMAQRMVG-SVNDW--STVKTALDIGCGRGILLNAVATQFKK-----TGSLGRVVGLDCKKRTTLSTLRTA------ 163 (293)
Q Consensus 98 ~~~~~~~~l~~-~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~-----~~~~~~v~~vDis~~~l~~a~~~~------ 163 (293)
.-+.+.+.++. .+... .+..+|+..||++|.-+..++-.+.+ .+...+|+|+|+|+.+++.|++-.
T Consensus 11 ~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~ 90 (196)
T PF01739_consen 11 QFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSL 90 (196)
T ss_dssp HHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGG
T ss_pred HHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHH
Confidence 33445555552 22211 24578999999999988888776654 121469999999999999987631
Q ss_pred -------------Hhc--------CCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHH
Q 022698 164 -------------KME--------GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGE 222 (293)
Q Consensus 164 -------------~~~--------~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (293)
... .+.++|.|.+.|+.+.+...+.||+|+|.+++.++. .+....+++.
T Consensus 91 ~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~----------~~~~~~vl~~ 160 (196)
T PF01739_consen 91 RGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFD----------PETQQRVLRR 160 (196)
T ss_dssp TTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-----------HHHHHHHHHH
T ss_pred hhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeC----------HHHHHHHHHH
Confidence 000 112468999999988333467899999999999887 4467889999
Q ss_pred HHHcccCCcEEEEEc
Q 022698 223 MVRVLKPGGVGVVWD 237 (293)
Q Consensus 223 ~~~~LkpgG~l~~~~ 237 (293)
+++.|+|||.|++-.
T Consensus 161 l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGH 175 (196)
T ss_dssp HGGGEEEEEEEEE-T
T ss_pred HHHHcCCCCEEEEec
Confidence 999999999999944
No 150
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.7e-11 Score=109.68 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=111.9
Q ss_pred cccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 88 AGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 88 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
...||..+....+.+..++++.+. ..++.++||+-||.|.+++.+++. ..+|+|+|+++++++.|++|++.|+
T Consensus 267 ~~sF~Q~N~~~~ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A~~NA~~n~ 339 (432)
T COG2265 267 PRSFFQVNPAVAEKLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAAQENAAANG 339 (432)
T ss_pred CCCceecCHHHHHHHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHHHHHHHHcC
Confidence 346666666677778888888875 356789999999999999999966 3599999999999999999999999
Q ss_pred CCCceEEEEcCCCCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-CCCchH
Q 022698 168 VQEYVTAREGDVRSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-LLHVPE 243 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~ 243 (293)
+.+ ++|..+++.+.... ...+|+|+.+||=.-+. ..+++.+. .++|..++++++ ..+...
T Consensus 340 i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--------------~~~lk~l~-~~~p~~IvYVSCNP~TlaR 403 (432)
T COG2265 340 IDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--------------REVLKQLA-KLKPKRIVYVSCNPATLAR 403 (432)
T ss_pred CCc-EEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC--------------HHHHHHHH-hcCCCcEEEEeCCHHHHHH
Confidence 865 99999999876422 35799999998854433 34555555 468888888854 334455
Q ss_pred HHHHHHHcCCc
Q 022698 244 YVRRLQELKME 254 (293)
Q Consensus 244 ~~~~l~~~gf~ 254 (293)
-...|.+.||.
T Consensus 404 Dl~~L~~~gy~ 414 (432)
T COG2265 404 DLAILASTGYE 414 (432)
T ss_pred HHHHHHhCCeE
Confidence 66778888887
No 151
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.28 E-value=1.2e-11 Score=102.80 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-----CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-----FGDN 187 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~ 187 (293)
....+||||||++|..++.+++.+|+ +++++.+|++++..+.|+++++..|+.++++++.+|+.+. + ...+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPE---DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTT---TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcc---cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 34679999999999999999998875 4699999999999999999999999988999999998752 1 1135
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+||+|+....-. +...+++.+.++|+|||.+++-+.
T Consensus 121 ~fD~VFiDa~K~---------------~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 121 QFDFVFIDADKR---------------NYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp SEEEEEEESTGG---------------GHHHHHHHHHHHEEEEEEEEEETT
T ss_pred ceeEEEEccccc---------------chhhHHHHHhhhccCCeEEEEccc
Confidence 799999875322 556788888899999999998543
No 152
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.27 E-value=4.6e-10 Score=95.82 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=113.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCccc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD 190 (293)
..+-+||||.||.|......+...+.. ..++...|.|+..++..++..+..|+.+.++|.+.|+.+.. -.+...|
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 456799999999999998888887753 25899999999999999999999999887799999998742 1245679
Q ss_pred EEEecchhhhhccccCcchhhhHHH-HHHHHHHHHHcccCCcEEEEEcCCC--------------------------chH
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAE-RMRVLGEMVRVLKPGGVGVVWDLLH--------------------------VPE 243 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~--------------------------~~~ 243 (293)
+++++..|..++ +.+ ....++.+.+.+.|||.++..+... -.+
T Consensus 212 l~iVsGL~ElF~----------Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 212 LAIVSGLYELFP----------DNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEEEecchhhCC----------cHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHH
Confidence 999999998887 223 4557899999999999999865322 237
Q ss_pred HHHHHHHcCCcceEEeeeeccce
Q 022698 244 YVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 244 ~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
..++.+++||+.+...-|..|..
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIF 304 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIF 304 (311)
T ss_pred HHHHHHHcCCchhhheeccCCce
Confidence 88888999999888877777744
No 153
>PRK01581 speE spermidine synthase; Validated
Probab=99.25 E-value=1.1e-10 Score=103.86 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=96.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH-----HhcCC-CCceEEEEcCCCCC-CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA-----KMEGV-QEYVTAREGDVRSL-PFGD 186 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~-----~~~~~-~~~v~~~~~d~~~~-~~~~ 186 (293)
..+.+||++|||+|..+..+++..+ ..+|+++|+++.+++.|++.. ..... .++++++.+|+.+. ....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~----v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET----VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 3456999999999998887776532 359999999999999999631 11111 36899999999873 2335
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--ch----HHHHHHHHcCCcceEEee
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VP----EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~----~~~~~l~~~gf~~~~~~~ 260 (293)
++||+|+++.+-.... . ....--.++++.+.+.|+|||++++..... .+ .+...+++.|+.......
T Consensus 225 ~~YDVIIvDl~DP~~~---~----~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 225 SLYDVIIIDFPDPATE---L----LSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred CCccEEEEcCCCcccc---c----hhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEE
Confidence 6899999984311000 0 001123579999999999999988743222 11 246677888888776665
Q ss_pred eeccc
Q 022698 261 RVTAF 265 (293)
Q Consensus 261 ~~~~~ 265 (293)
.+..|
T Consensus 298 ~vPsy 302 (374)
T PRK01581 298 IVPSF 302 (374)
T ss_pred ecCCC
Confidence 55444
No 154
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.24 E-value=1.3e-10 Score=95.77 Aligned_cols=117 Identities=10% Similarity=0.013 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+.+.+...+.....+.++||++||+|.+++.++.+.. .+|+++|.++.+++.+++|++.++..+++++++.|+.
T Consensus 35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-----~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 35 VVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-----KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-----CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 33344444443333567999999999999999987632 4899999999999999999999988767999999995
Q ss_pred CC-C-C-CC-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEE
Q 022698 181 SL-P-F-GD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVV 235 (293)
Q Consensus 181 ~~-~-~-~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~ 235 (293)
+. . . .. ..||+|+..|||... .....++.+. .+|+++|.+++
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~~-------------~~~~~l~~l~~~~~l~~~~iiv~ 157 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFNG-------------ALQALLELCENNWILEDTVLIVV 157 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCCC-------------cHHHHHHHHHHCCCCCCCeEEEE
Confidence 52 1 1 12 248999988988642 2233344443 46888887766
No 155
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.23 E-value=8.2e-11 Score=95.99 Aligned_cols=120 Identities=22% Similarity=0.334 Sum_probs=79.8
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+...++...|-|+|||.+.++..+. + ..+|...|+-.. .+ .+..+|+...|
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~----~---~~~V~SfDLva~--------------n~--~Vtacdia~vP 117 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP----N---KHKVHSFDLVAP--------------NP--RVTACDIANVP 117 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH------S------EEEEESS-S--------------ST--TEEES-TTS-S
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhcc----c---CceEEEeeccCC--------------CC--CEEEecCccCc
Confidence 4455666555556789999999999875432 1 247999998653 12 36789999999
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----CchHHHHHHHHcCCcceEEe
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~l~~~gf~~~~~~ 259 (293)
+++++.|++|++..+-.. +...+++++.|+|||||.|.+.+.. ......+.+++.||+.....
T Consensus 118 L~~~svDv~VfcLSLMGT-------------n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 118 LEDESVDVAVFCLSLMGT-------------NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp --TT-EEEEEEES---SS--------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred CCCCceeEEEEEhhhhCC-------------CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 999999999998766543 7889999999999999999997653 45678899999999987653
No 156
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.22 E-value=7.1e-11 Score=107.30 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=97.8
Q ss_pred ccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC
Q 022698 89 GNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV 168 (293)
Q Consensus 89 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~ 168 (293)
.-||........++...+++.+....+..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~----~~~V~a~Din~~Av~~a~~N~~~N~~ 106 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG----VEKVTLNDINPDAVELIKKNLELNGL 106 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 34676666777777777776654221346899999999999999987754 24899999999999999999999987
Q ss_pred CCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 169 QEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 169 ~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
. ++.+.+.|+..+....++||+|+++|+ . .+..++..+.+.+++||++++.
T Consensus 107 ~-~~~v~~~Da~~~l~~~~~fD~V~lDP~----G------------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 107 E-NEKVFNKDANALLHEERKFDVVDIDPF----G------------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-ceEEEhhhHHHHHhhcCCCCEEEECCC----C------------CcHHHHHHHHHHhcCCCEEEEE
Confidence 4 467899998764211457999999875 2 3356777777789999999984
No 157
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.22 E-value=8.4e-11 Score=103.21 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=84.4
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.++.++-..+.+.+.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+..+
T Consensus 13 ~~GQnFL~d~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~~~~ 85 (294)
T PTZ00338 13 KFGQHILKNPLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSPLAS 85 (294)
T ss_pred CCCccccCCHHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcCCCC
Confidence 445555567778888888764 567789999999999999988875 3489999999999999999988766556
Q ss_pred ceEEEEcCCCCCCCCCCcccEEEecchhhhhc
Q 022698 171 YVTAREGDVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
+++++.+|+.+.++ .+||.|++|.||+...
T Consensus 86 ~v~ii~~Dal~~~~--~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 86 KLEVIEGDALKTEF--PYFDVCVANVPYQISS 115 (294)
T ss_pred cEEEEECCHhhhcc--cccCEEEecCCcccCc
Confidence 79999999987654 4689999999998654
No 158
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.22 E-value=5.8e-11 Score=97.83 Aligned_cols=135 Identities=13% Similarity=0.126 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
...+.||.|+|.|.++..++..+ ..+|-.+|.++..++.|++...... ....++.+..+.++..+.++||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-----f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-----FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC------SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-----cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEe
Confidence 45689999999999998765443 2499999999999999998765521 13368888888887555679999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-----------C------CCchHHHHHHHHcCCcceE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD-----------L------LHVPEYVRRLQELKMEDIR 257 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-----------~------~~~~~~~~~l~~~gf~~~~ 257 (293)
-.++.|+. +++..++|+++...|+|+|++++=+ . ...+.+.++++++|+..++
T Consensus 129 QW~lghLT----------D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 129 QWCLGHLT----------DEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp ES-GGGS-----------HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred hHhhccCC----------HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 99999998 5689999999999999999999811 1 1235799999999999876
Q ss_pred Eeeeeccce
Q 022698 258 VSERVTAFM 266 (293)
Q Consensus 258 ~~~~~~~~~ 266 (293)
.. ...+|+
T Consensus 199 ~~-~Q~~fP 206 (218)
T PF05891_consen 199 EE-KQKGFP 206 (218)
T ss_dssp EE-E-TT--
T ss_pred ec-cccCCC
Confidence 54 334443
No 159
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.21 E-value=2.3e-10 Score=96.25 Aligned_cols=143 Identities=22% Similarity=0.291 Sum_probs=98.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-c------C---
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-E------G--- 167 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~------~--- 167 (293)
.++.+.+.+-. +. ..++.+||..|||.|.-...|+++ +.+|+|+|+|+.+++.+.+.... . .
T Consensus 22 ~~p~L~~~~~~-l~-~~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 22 PNPALVEYLDS-LA-LKPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp STHHHHHHHHH-HT-TSTSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCHHHHHHHHh-cC-CCCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceee
Confidence 44555554443 32 356679999999999999999876 57999999999999988433221 0 0
Q ss_pred -CCCceEEEEcCCCCCCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE--EcCC----
Q 022698 168 -VQEYVTAREGDVRSLPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV--WDLL---- 239 (293)
Q Consensus 168 -~~~~v~~~~~d~~~~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~--~~~~---- 239 (293)
-.+++++.++|+.+++... ++||+|.=...++.+++ +...+..+.+.++|+|||.+++ ....
T Consensus 94 ~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp----------~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~ 163 (218)
T PF05724_consen 94 YQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPP----------EMRERYAQQLASLLKPGGRGLLITLEYPQGEM 163 (218)
T ss_dssp ETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-G----------GGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS
T ss_pred ecCCceEEEEcccccCChhhcCCceEEEEecccccCCH----------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC
Confidence 1235789999999976432 57999999988888873 3678899999999999999433 2221
Q ss_pred -------CchHHHHHHHHcCCcceEEe
Q 022698 240 -------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 240 -------~~~~~~~~l~~~gf~~~~~~ 259 (293)
..+++.+++. .+|+.....
T Consensus 164 ~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 164 EGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred CCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 1235666665 777755554
No 160
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.21 E-value=7.5e-11 Score=102.90 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=79.0
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.|+.++.....+.+.+++.+. ..++.+|||+|||+|.++..+++.. .+++|+|+++.+++.++++... +
T Consensus 19 ~~gq~fl~~~~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~avE~d~~~~~~~~~~~~~----~ 87 (272)
T PRK00274 19 SLGQNFLIDENILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERA------AKVTAVEIDRDLAPILAETFAE----D 87 (272)
T ss_pred ccCcCcCCCHHHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhC------CcEEEEECCHHHHHHHHHhhcc----C
Confidence 445555567778888887764 4567799999999999999998873 3899999999999999887642 4
Q ss_pred ceEEEEcCCCCCCCCCCcccEEEecchhhhh
Q 022698 171 YVTAREGDVRSLPFGDNYFDVVVSAAFFHTV 201 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~ 201 (293)
+++++++|+.++++++-.+|.|++|+||+..
T Consensus 88 ~v~~i~~D~~~~~~~~~~~~~vv~NlPY~is 118 (272)
T PRK00274 88 NLTIIEGDALKVDLSELQPLKVVANLPYNIT 118 (272)
T ss_pred ceEEEEChhhcCCHHHcCcceEEEeCCccch
Confidence 5999999999876543225999999998754
No 161
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.21 E-value=9.4e-11 Score=102.10 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=87.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhc----CCCcEEEEEeCCHHHHHHHHHHH------------------Hh-------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKT----GSLGRVVGLDCKKRTTLSTLRTA------------------KM------- 165 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~----~~~~~v~~vDis~~~l~~a~~~~------------------~~------- 165 (293)
+..+|+..||+||.-+..++-.+.+. ....+|+|+|||+.+++.|++.. ..
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999999888887765442 11468999999999999998752 00
Q ss_pred -----cCCCCceEEEEcCCCCCCCC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 166 -----EGVQEYVTAREGDVRSLPFG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 166 -----~~~~~~v~~~~~d~~~~~~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
..+..+|.|.+.|+.+.+++ .++||+|+|.+++.++. .+....+++++++.|+|||+|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~----------~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD----------KTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC----------HHHHHHHHHHHHHHhCCCcEEEEe
Confidence 11335689999999875432 57899999999998886 347889999999999999998874
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.20 E-value=1.3e-10 Score=100.56 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=80.2
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.++.++-..+.+.+.+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. .+
T Consensus 6 ~~GQnfl~d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~---~~ 75 (258)
T PRK14896 6 KLGQHFLIDDRVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIA---AG 75 (258)
T ss_pred cCCccccCCHHHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhcc---CC
Confidence 345555567778888888764 456789999999999999999876 24899999999999999988754 24
Q ss_pred ceEEEEcCCCCCCCCCCcccEEEecchhhhh
Q 022698 171 YVTAREGDVRSLPFGDNYFDVVVSAAFFHTV 201 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~ 201 (293)
++.++++|+.+.+++ .||.|++|+||+..
T Consensus 76 ~v~ii~~D~~~~~~~--~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 76 NVEIIEGDALKVDLP--EFNKVVSNLPYQIS 104 (258)
T ss_pred CEEEEEeccccCCch--hceEEEEcCCcccC
Confidence 699999999887653 48999999998753
No 163
>PRK03612 spermidine synthase; Provisional
Probab=99.19 E-value=8e-11 Score=111.53 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-----CC-CCceEEEEcCCCCC-CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-----GV-QEYVTAREGDVRSL-PFGD 186 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-----~~-~~~v~~~~~d~~~~-~~~~ 186 (293)
+++++|||+|||+|..+..++++ +. ..+++++|+++++++.++++.... .. .++++++..|..+. ....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~---v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PD---VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC---cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 45679999999999999888864 21 259999999999999999853211 11 25799999998763 2234
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---C---chHHHHHHHHcCC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---H---VPEYVRRLQELKM 253 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~---~~~~~~~l~~~gf 253 (293)
++||+|+++.+....+ ... .--..++++.+.+.|+|||.+++.... . ..+..+.+++.||
T Consensus 372 ~~fDvIi~D~~~~~~~---~~~----~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 372 EKFDVIIVDLPDPSNP---ALG----KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCEEEEeCCCCCCc---chh----ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 6899999986533221 000 001256899999999999999883221 1 1357777888999
No 164
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.19 E-value=2.6e-10 Score=97.86 Aligned_cols=103 Identities=24% Similarity=0.351 Sum_probs=85.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
.+.+..+|+|||+|+|.++..+++..| +.+++..|. |..++.+++ .+++++..+|+.+ +++. +|+
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~-~~P~--~D~ 161 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAYP----NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD-PLPV--ADV 161 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHST----TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT-CCSS--ESE
T ss_pred cccCccEEEeccCcchHHHHHHHHHCC----CCcceeecc-Hhhhhcccc-------ccccccccccHHh-hhcc--ccc
Confidence 355667899999999999999999988 579999999 888887777 4679999999984 5555 999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC--cEEEEEcCC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG--GVGVVWDLL 239 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~~ 239 (293)
++...++|..+ +++-..+|+++++.|+|| |+|++++..
T Consensus 162 ~~l~~vLh~~~----------d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 162 YLLRHVLHDWS----------DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp EEEESSGGGS-----------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred eeeehhhhhcc----------hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 99999999988 457789999999999999 999997643
No 165
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.19 E-value=6.9e-11 Score=97.24 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEEcCCCCC--CCCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGV-QEYVTAREGDVRSL--PFGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~-~~~v~~~~~d~~~~--~~~~~~f 189 (293)
..+.+|||.|+|-|..++..+++ ++ .|..+|.+++.++.|.-|-=..++ ..+++++.+|..+. .+.+.+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf 206 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF 206 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence 45789999999999999888776 44 999999999999988766322222 23478999998764 2678899
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---------CchHHHHHHHHcCCcceEEee
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
|+|+-.||=.... + .---.+++++++|+|+|||.++-+.-. ....+.+.|++.||..+...+
T Consensus 207 DaIiHDPPRfS~A------g---eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 207 DAIIHDPPRFSLA------G---ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred ceEeeCCCccchh------h---hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 9999887732221 1 113468999999999999998753222 235799999999999887765
Q ss_pred eecc
Q 022698 261 RVTA 264 (293)
Q Consensus 261 ~~~~ 264 (293)
.-.+
T Consensus 278 ~~~g 281 (287)
T COG2521 278 EALG 281 (287)
T ss_pred hccc
Confidence 4333
No 166
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.19 E-value=2.2e-10 Score=103.41 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC----CCCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP----FGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~----~~~~~f 189 (293)
.+++|||+.|-||.++++.+..- ..+|+.||+|..+++.|++|++.|++. +++.|++.|+.++- -...+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-----A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-----ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-----CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 37899999999999998887651 239999999999999999999999985 46899999998742 123489
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|+|+..||-..-..... +...++...++..+.++|+|||.++++++..
T Consensus 292 DlIilDPPsF~r~k~~~---~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 292 DLIILDPPSFARSKKQE---FSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred cEEEECCcccccCcccc---hhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999988544332111 4445688889999999999999999976654
No 167
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.18 E-value=1.7e-10 Score=93.82 Aligned_cols=108 Identities=23% Similarity=0.253 Sum_probs=74.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEEcCCCCCC----CCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--VQEYVTAREGDVRSLP----FGD 186 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~ 186 (293)
...+.+|||+|||+|..++.++...+ ..+|+.+|.++ .++.++.|++.|+ ...++.+...|+.+.. ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~----~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFG----AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-----SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-
T ss_pred hcCCceEEEECCccchhHHHHHhccC----CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccccc
Confidence 34678999999999999998887733 46999999998 9999999999887 5567899999986621 234
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+||+|++..+++.-. ....+++.+.++|+|+|.+++..
T Consensus 118 ~~~D~IlasDv~Y~~~------------~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 118 HSFDVILASDVLYDEE------------LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp SSBSEEEEES--S-GG------------GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ccCCEEEEecccchHH------------HHHHHHHHHHHHhCCCCEEEEEe
Confidence 6899999998888655 67788899999999999866643
No 168
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.17 E-value=4.5e-10 Score=101.40 Aligned_cols=125 Identities=11% Similarity=0.069 Sum_probs=88.9
Q ss_pred hcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 87 ~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
....|+..+....+.+.+++.+.+. .. +.+|||+|||+|.++..+++.. .+|+++|+|+.|++.+++|+..+
T Consensus 171 ~~~~F~Q~N~~~~~~l~~~v~~~~~-~~-~~~vlDl~~G~G~~sl~la~~~------~~v~~vE~~~~av~~a~~n~~~~ 242 (353)
T TIGR02143 171 VENSFTQPNAAVNIKMLEWACEVTQ-GS-KGDLLELYCGNGNFSLALAQNF------RRVLATEIAKPSVNAAQYNIAAN 242 (353)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhh-cC-CCcEEEEeccccHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHc
Confidence 3444555555556667777766653 12 2479999999999999888763 38999999999999999999999
Q ss_pred CCCCceEEEEcCCCCCCCC----------C------CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC
Q 022698 167 GVQEYVTAREGDVRSLPFG----------D------NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG 230 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~~~----------~------~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 230 (293)
++. +++|+.+|+.++... . .+||+|+.+||-..+. ..+++.+. +|+
T Consensus 243 ~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~--------------~~~l~~l~---~~~ 304 (353)
T TIGR02143 243 NID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLD--------------PDTCKLVQ---AYE 304 (353)
T ss_pred CCC-cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCc--------------HHHHHHHH---cCC
Confidence 874 599999998763210 1 2389999999843222 24444443 377
Q ss_pred cEEEEEc
Q 022698 231 GVGVVWD 237 (293)
Q Consensus 231 G~l~~~~ 237 (293)
+++|+.+
T Consensus 305 ~ivYvsC 311 (353)
T TIGR02143 305 RILYISC 311 (353)
T ss_pred cEEEEEc
Confidence 8777754
No 169
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.14 E-value=8.9e-10 Score=108.00 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=99.5
Q ss_pred cCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhc---------------------------------
Q 022698 94 SAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKT--------------------------------- 140 (293)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~--------------------------------- 140 (293)
...++.+.++..++....-..++..++|.+||+|++.+..+......
T Consensus 169 ~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 169 GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 44567788888888765422567899999999999999887632100
Q ss_pred -----CCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC--CCcccEEEecchhhhhccccCcchhhhH
Q 022698 141 -----GSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG--DNYFDVVVSAAFFHTVGKEYGHRTVEAA 213 (293)
Q Consensus 141 -----~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~Iv~~~~~~~~~~~~~~~~~~~~ 213 (293)
....+++|+|+++.+++.|++|+..+|+.+.+.+.++|+.+++.+ .++||+|++||||..--.+ .
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~--------~ 320 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE--------E 320 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc--------h
Confidence 012379999999999999999999999988899999999887533 3579999999999643210 1
Q ss_pred HHHHHHHHHHHHccc---CCcEEEEEcC
Q 022698 214 AERMRVLGEMVRVLK---PGGVGVVWDL 238 (293)
Q Consensus 214 ~~~~~~l~~~~~~Lk---pgG~l~~~~~ 238 (293)
.+...+++.+.+.++ +|+.++++..
T Consensus 321 ~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 321 PALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 244455555554444 8888877653
No 170
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.14 E-value=1.3e-10 Score=95.18 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=86.9
Q ss_pred chHHHHHHHHHhcCCC-CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 98 LHYDMAQRMVGSVNDW-STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
....+-+.+...+... -.+.++||+.||||.+++..+++-. .+|+.+|.|+.++...++|++..+..+++.++.
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-----~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-----KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-----CeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 3344455555555433 4578999999999999998877632 599999999999999999999998877899999
Q ss_pred cCCCCCC----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH--HcccCCcEEEE
Q 022698 177 GDVRSLP----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV--RVLKPGGVGVV 235 (293)
Q Consensus 177 ~d~~~~~----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~~ 235 (293)
.|+...- ....+||+|++.|||.... ....++..+. .+|+++|.+++
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDPPY~~~~------------~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDPPYAKGL------------YYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE--STTSCH------------HHHHHHHHHHHTTSEEEEEEEEE
T ss_pred cCHHHHHHhhcccCCCceEEEECCCcccch------------HHHHHHHHHHHCCCCCCCEEEEE
Confidence 9975421 1357899999999997643 2356666666 78999998888
No 171
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.13 E-value=3.4e-10 Score=96.68 Aligned_cols=104 Identities=21% Similarity=0.294 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-C-C----C
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-F-G----D 186 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-~----~ 186 (293)
.+..+|||||+++|..++.++..++. +++++++|++++..+.|+++++..|+.++++++.+|+.+. + + . .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~---~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE---DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccC
Confidence 45679999999999999999988764 4699999999999999999999999989999999998663 2 1 1 2
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
++||+|+...- ......+++.+.++|+|||.+++
T Consensus 155 ~~fD~iFiDad---------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 155 GTFDFIFVDAD---------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred CcccEEEecCC---------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 68999998643 12556788888999999999887
No 172
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.13 E-value=9.5e-10 Score=95.03 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=79.3
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.++.++-....+.+.+++.+. ..++.+|||+|||+|.++..+++.. ..++++|+++.+++.++++... .+
T Consensus 6 ~~gq~fl~d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~~iE~d~~~~~~l~~~~~~---~~ 75 (253)
T TIGR00755 6 SLGQNFLIDESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRA------KKVTAIEIDPRLAEILRKLLSL---YE 75 (253)
T ss_pred CCCCccCCCHHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhC------CcEEEEECCHHHHHHHHHHhCc---CC
Confidence 455556677788888888774 4567899999999999999998874 3799999999999999887643 25
Q ss_pred ceEEEEcCCCCCCCCCCccc---EEEecchhhhh
Q 022698 171 YVTAREGDVRSLPFGDNYFD---VVVSAAFFHTV 201 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~~~fD---~Iv~~~~~~~~ 201 (293)
++.++.+|+...+++ ++| +|++|.||+..
T Consensus 76 ~v~v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~ 107 (253)
T TIGR00755 76 RLEVIEGDALKVDLP--DFPKQLKVVSNLPYNIS 107 (253)
T ss_pred cEEEEECchhcCChh--HcCCcceEEEcCChhhH
Confidence 689999999887653 466 99999998753
No 173
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.13 E-value=4.3e-10 Score=98.07 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEEcCCCCC-CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--V-QEYVTAREGDVRSL-PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~-~~~v~~~~~d~~~~-~~~~~~fD 190 (293)
.+.+||+||||+|..+..+++..+ ..+++++|+++.+++.+++++...+ . .+++++...|..+. ....++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~----~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS----VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC----cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 345999999999999988876542 3589999999999999999875432 1 24688888887652 11246899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+|+++.+....+ .... -..++++.+.+.|+|||.+++.
T Consensus 148 vIi~D~~~~~~~---~~~l-----~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGP---AETL-----FTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCc---ccch-----hHHHHHHHHHHHhCCCcEEEEc
Confidence 999976532211 0000 1357889999999999999885
No 174
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.12 E-value=9.5e-10 Score=91.03 Aligned_cols=130 Identities=26% Similarity=0.327 Sum_probs=91.4
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C--CCCCcccEEEe
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P--FGDNYFDVVVS 194 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~Iv~ 194 (293)
.+||||||.|.++..+|...| ...++|+|++...+..+.+.+...++ +++.++++|+..+ . ++++++|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P----d~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP----DINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST----TSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC----CCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEE
Confidence 899999999999999999987 56999999999999999999988887 5699999999872 2 45689999999
Q ss_pred cchhhhhccccC-cchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHc--CCcceE
Q 022698 195 AAFFHTVGKEYG-HRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQEL--KMEDIR 257 (293)
Q Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~--gf~~~~ 257 (293)
+.|=-+...... .+. --..+++.++++|+|||.+.+.+... .....+.+.+. +|+.+.
T Consensus 95 ~FPDPWpK~rH~krRl-----~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRL-----VNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ES-----SGGGGGGST-----TSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred eCCCCCcccchhhhhc-----CCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEcc
Confidence 866332221000 111 12468999999999999998854322 23455666663 666553
No 175
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.12 E-value=5.4e-10 Score=93.36 Aligned_cols=124 Identities=21% Similarity=0.315 Sum_probs=93.4
Q ss_pred HHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC
Q 022698 104 QRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP 183 (293)
Q Consensus 104 ~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (293)
+.+++.+........|.|+|||.+.++. .. ...|+..|+-+. +-++..+|+.+.|
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~------~~kV~SfDL~a~----------------~~~V~~cDm~~vP 223 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SE------RHKVHSFDLVAV----------------NERVIACDMRNVP 223 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh---cc------ccceeeeeeecC----------------CCceeeccccCCc
Confidence 3455555544566789999999998864 11 248999998542 1367889999999
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC----CchHHHHHHHHcCCcceEEe
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL----HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~~~~l~~~gf~~~~~~ 259 (293)
+++++.|++|++..+-.. +...+++++.|+|++||.+++.+.. ....+.+.+.+.||......
T Consensus 224 l~d~svDvaV~CLSLMgt-------------n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMGT-------------NLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred CccCcccEEEeeHhhhcc-------------cHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 999999999988665433 7889999999999999999996653 34568889999999876554
Q ss_pred eeeccc
Q 022698 260 ERVTAF 265 (293)
Q Consensus 260 ~~~~~~ 265 (293)
.....|
T Consensus 291 ~~n~~F 296 (325)
T KOG3045|consen 291 VSNKYF 296 (325)
T ss_pred hhcceE
Confidence 333333
No 176
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.4e-09 Score=95.40 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=102.1
Q ss_pred cccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCC----------------------------
Q 022698 92 FYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSL---------------------------- 143 (293)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~---------------------------- 143 (293)
+....++.+.++..++.... +.++..++|.-||+|++++..+...++.-|+
T Consensus 169 ~~g~ApLketLAaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~ 247 (381)
T COG0116 169 YDGPAPLKETLAAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER 247 (381)
T ss_pred cCCCCCchHHHHHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence 44455677888888887664 6677899999999999999988765321110
Q ss_pred c-------EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHH
Q 022698 144 G-------RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216 (293)
Q Consensus 144 ~-------~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~ 216 (293)
+ .++|+|+++.+++.|+.|+...|+.+.++|.+.|+..+..+...+|+|||||||..-- +.+... ..=.
T Consensus 248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRl---g~~~~v-~~LY 323 (381)
T COG0116 248 ARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERL---GSEALV-AKLY 323 (381)
T ss_pred HhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhc---CChhhH-HHHH
Confidence 1 3779999999999999999999999999999999998764336899999999996322 111000 0012
Q ss_pred HHHHHHHHHcccCCcEEEEEcC
Q 022698 217 MRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 217 ~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+.+.+.+.++--+..+++..
T Consensus 324 ~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 324 REFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHhcCCceEEEEcc
Confidence 3444555566777777777653
No 177
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.10 E-value=1.1e-09 Score=97.57 Aligned_cols=110 Identities=23% Similarity=0.219 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc---------CCCCceEEEEcCCCCCC--
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME---------GVQEYVTAREGDVRSLP-- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~---------~~~~~v~~~~~d~~~~~-- 183 (293)
++.+|||+|||-|.-+.-+...- -..++|+|||...++.|+++.+.. ...-...|+.+|.....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcC-----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 67899999999999877666542 259999999999999999988321 11123677888876421
Q ss_pred --CC--CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 --FG--DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 --~~--~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+. ..+||+|-|-..+|+.= ...+....+++++.+.|+|||.++...
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~F--------ese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAF--------ESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGG--------SSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhccccCCCcceeehHHHHHHhc--------CCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 22 25899999998888652 234466779999999999999998754
No 178
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=4.6e-10 Score=92.93 Aligned_cols=111 Identities=24% Similarity=0.427 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC-----C------------------
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV-----Q------------------ 169 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~-----~------------------ 169 (293)
+..+..+|||||.+|..+..+++.+.. ..+.|+||++..++.|+++.+...- .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 456778999999999999999999873 5899999999999999998653210 0
Q ss_pred -----------CceEEE-------EcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc
Q 022698 170 -----------EYVTAR-------EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG 231 (293)
Q Consensus 170 -----------~~v~~~-------~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 231 (293)
+++.|. ..|+.+ .....||+|+|....-|+.-..|. +....++++++++|.|||
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD------~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGD------DGLRRFFRKISSLLHPGG 203 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEeccccc------HHHHHHHHHHHHhhCcCc
Confidence 011111 111221 234679999998776555433332 256789999999999999
Q ss_pred EEEE
Q 022698 232 VGVV 235 (293)
Q Consensus 232 ~l~~ 235 (293)
+|++
T Consensus 204 iLvv 207 (288)
T KOG2899|consen 204 ILVV 207 (288)
T ss_pred EEEE
Confidence 9998
No 179
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.10 E-value=5.4e-10 Score=92.34 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.+|+|+.||.|.+++.+++..+ ...|+++|++|.+++.+++|++.|++.+++...++|..++.. .+.||.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~----~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK----AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-----SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC----ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEE
Confidence 45688999999999999999987533 468999999999999999999999999999999999998754 7889999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
+++.|-... .++..+.+++++||++-
T Consensus 174 im~lp~~~~----------------~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPESSL----------------EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TSSGG----------------GGHHHHHHHEEEEEEEE
T ss_pred EECChHHHH----------------HHHHHHHHHhcCCcEEE
Confidence 998775432 46777888999999874
No 180
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.09 E-value=6.3e-09 Score=81.54 Aligned_cols=157 Identities=16% Similarity=0.206 Sum_probs=110.8
Q ss_pred cchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 97 PLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
+.+.-+++.+...+. ...+..|||+|.|+|.++.+++++.-. ...++++|.|++......+... .++++.
T Consensus 31 PsSs~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~---~~~L~~iE~~~dF~~~L~~~~p------~~~ii~ 100 (194)
T COG3963 31 PSSSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVR---PESLTAIEYSPDFVCHLNQLYP------GVNIIN 100 (194)
T ss_pred CCcHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCC---ccceEEEEeCHHHHHHHHHhCC------Cccccc
Confidence 455557777777765 466778999999999999999887532 4699999999999887776643 266888
Q ss_pred cCCCCCC-----CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHc
Q 022698 177 GDVRSLP-----FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQEL 251 (293)
Q Consensus 177 ~d~~~~~-----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~ 251 (293)
+|+.++. ..+..||.|+|.-|+-.++ .....++++.+...|.+||.++...+.+.... +..-
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P----------~~~~iaile~~~~rl~~gg~lvqftYgp~s~v---~l~r 167 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFP----------MHRRIAILESLLYRLPAGGPLVQFTYGPLSPV---LLGR 167 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCc----------HHHHHHHHHHHHHhcCCCCeEEEEEecCCCcc---cccc
Confidence 8887653 3456799999998877766 23556889999999999999998766543332 1123
Q ss_pred CCcceEEeeeeccceecceeeeeec
Q 022698 252 KMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 252 gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
++-.+....++..+.+...++.+++
T Consensus 168 ~~y~v~~~~~vvRN~PPA~v~~~~~ 192 (194)
T COG3963 168 GDYNVQHFDFVVRNFPPAQVWIYRR 192 (194)
T ss_pred cceeEEEeeEEEecCCceeEEEeec
Confidence 3334444445555444555665554
No 181
>PLN02366 spermidine synthase
Probab=99.08 E-value=1e-09 Score=96.86 Aligned_cols=110 Identities=17% Similarity=0.179 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEEcCCCCCC--CCCCc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GV-QEYVTAREGDVRSLP--FGDNY 188 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~~~--~~~~~ 188 (293)
.++++||+||||.|..+..+++. +. ..+++.+|+++.+++.+++.+... +. .++++++.+|+...- .++++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~---v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SS---VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC---CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 45679999999999999988865 21 358999999999999999987542 12 358999999976531 22568
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
||+|++..+-...+ ...--..++++.+.+.|+|||+++.
T Consensus 166 yDvIi~D~~dp~~~--------~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 166 YDAIIVDSSDPVGP--------AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CCEEEEcCCCCCCc--------hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99999864322111 0001235789999999999999976
No 182
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.07 E-value=6.4e-10 Score=96.69 Aligned_cols=136 Identities=20% Similarity=0.235 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEEcCCCCCC---CCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ-EYVTAREGDVRSLP---FGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~---~~~~~fD 190 (293)
.+++|||+.|-+|.++++.+..- ..+|+.+|.|..+++.+++|+..|++. ++++|++.|+.+.- -..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-----A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-----AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-----ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-----CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCC
Confidence 46799999999999998776541 248999999999999999999999976 57999999997631 1246899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC---chHHHHHHHHcCCcceEEeeee
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH---VPEYVRRLQELKMEDIRVSERV 262 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~l~~~gf~~~~~~~~~ 262 (293)
+||+.||-..- +. +....+...++..+.++|+|||.|+++.+.+ .+...+.+.+.+ ..++..+.+
T Consensus 198 ~IIlDPPsF~k----~~--~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a-~~~~~~~~~ 265 (286)
T PF10672_consen 198 LIILDPPSFAK----SK--FDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAA-REVEFIERL 265 (286)
T ss_dssp EEEE--SSEES----ST--CEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHH-HHCEEEEEE
T ss_pred EEEECCCCCCC----CH--HHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhC-ccceEeeee
Confidence 99999885421 11 2224577889999999999999998865543 344566665554 344444433
No 183
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.07 E-value=3e-09 Score=98.88 Aligned_cols=125 Identities=20% Similarity=0.182 Sum_probs=93.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CCCCcccE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FGDNYFDV 191 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 191 (293)
..++.+|||+|||.|.-+.+++..+... ..+++.|+++..+..+++|+++.|+. ++.+...|...+. ...+.||.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~---g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQ---GAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCC---CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCe
Confidence 4678899999999999999999988643 48999999999999999999999984 5888888887653 22357999
Q ss_pred EEecchhhhhc---cccCc-------chhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc
Q 022698 192 VVSAAFFHTVG---KEYGH-------RTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV 241 (293)
Q Consensus 192 Iv~~~~~~~~~---~~~~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 241 (293)
|++..|..... ..+.. ....-..-..+++..+.++|||||+|+.+.+...
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 99887754222 11100 0000111235689999999999999998877643
No 184
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-09 Score=95.48 Aligned_cols=107 Identities=25% Similarity=0.241 Sum_probs=81.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+..++.|||+|||+|.++...++.. ..+|+|+|.|.-+ +.|.+.+..|+..+.++++.+.+.+..+|..+.|+|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG-----A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiI 131 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG-----ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDII 131 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC-----cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEE
Confidence 4568899999999999999888774 3599999998765 999999999999889999999999876667899999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
+|-..-+.+-.+.. ...++-.=-+.|+|||.++
T Consensus 132 vSEWMGy~Ll~EsM---------ldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 132 VSEWMGYFLLYESM---------LDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eehhhhHHHHHhhh---------hhhhhhhhhhccCCCceEc
Confidence 99654433321110 1122222237899999987
No 185
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=2.8e-10 Score=93.41 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=106.1
Q ss_pred chHHHHHHHHHhcCCC-CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE
Q 022698 98 LHYDMAQRMVGSVNDW-STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE 176 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~ 176 (293)
+.+++...+.+.+-+. +....++|||||-|.+..++..+. -.+++.+|.|..|++.++.. +.+++ .+....
T Consensus 54 lkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~-----vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v 125 (325)
T KOG2940|consen 54 LKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG-----VEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFV 125 (325)
T ss_pred HHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcc-----hhheeeeecchHHHHHhhcc-CCCce--EEEEEe
Confidence 3444444555444322 234579999999999998887663 24899999999999988754 33443 267778
Q ss_pred cCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc-------------------
Q 022698 177 GDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD------------------- 237 (293)
Q Consensus 177 ~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~------------------- 237 (293)
.|-+.+++.++++|+|+++..+||.. +....+.+++..|||+|.++-.-
T Consensus 126 ~DEE~Ldf~ens~DLiisSlslHW~N------------dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelE 193 (325)
T KOG2940|consen 126 GDEEFLDFKENSVDLIISSLSLHWTN------------DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELE 193 (325)
T ss_pred cchhcccccccchhhhhhhhhhhhhc------------cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHH
Confidence 89888889899999999999999998 77888999999999999987410
Q ss_pred -----------CCCchHHHHHHHHcCCcceEEe
Q 022698 238 -----------LLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 238 -----------~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
+.+..+.-.+|..+||....+.
T Consensus 194 R~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 194 REGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 1123467778888888876654
No 186
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.03 E-value=2.5e-09 Score=98.98 Aligned_cols=108 Identities=24% Similarity=0.324 Sum_probs=78.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+..|+|+|||+|-+....++.....+...+|+|+|-|+.+...+++..+.+++.++|+++.+|+++...+ .++|+|||=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5689999999999998877765444445699999999999988888878889989999999999997654 489999984
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
..=.....| -..+.+....+.|||||+++
T Consensus 266 lLGsfg~nE----------l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNE----------LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTT----------SHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccc----------cCHHHHHHHHhhcCCCCEEe
Confidence 321111100 12345777789999999876
No 187
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.02 E-value=3.2e-09 Score=91.44 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCC--CCCeEEEEcCCCChHHHHHHHHhhhcC-----CCcEEEEEeCCHHHHHHHHHHH-------H-
Q 022698 100 YDMAQRMVGSVNDWS--TVKTALDIGCGRGILLNAVATQFKKTG-----SLGRVVGLDCKKRTTLSTLRTA-------K- 164 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~~~-----~~~~v~~vDis~~~l~~a~~~~-------~- 164 (293)
+.+.+.++..+.... ..-+|+-+||+||.-+..+|-.+.+.. ...+|+|+|||..+++.|+.-. +
T Consensus 79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 445555555443212 367999999999987777766554432 2579999999999999887521 0
Q ss_pred -----------h---------cCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHH
Q 022698 165 -----------M---------EGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMV 224 (293)
Q Consensus 165 -----------~---------~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (293)
. ..+...|.|...|+...++..+.||+|+|-+++..+. .+...++++.++
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd----------~~~q~~il~~f~ 228 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD----------EETQERILRRFA 228 (268)
T ss_pred CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC----------HHHHHHHHHHHH
Confidence 0 0112457788888876543457799999999999887 447788999999
Q ss_pred HcccCCcEEEEE
Q 022698 225 RVLKPGGVGVVW 236 (293)
Q Consensus 225 ~~LkpgG~l~~~ 236 (293)
..|+|||.|++-
T Consensus 229 ~~L~~gG~LflG 240 (268)
T COG1352 229 DSLKPGGLLFLG 240 (268)
T ss_pred HHhCCCCEEEEc
Confidence 999999999994
No 188
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=99.02 E-value=5.2e-10 Score=90.44 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=110.5
Q ss_pred cCchhhhHHhhhccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHhhhHHHHHHhhcccccccchhhhhhHhhhcc
Q 022698 10 TTREWRQIYAIYGVEQWQTLIFLLCHAIFFSISSILFLVYFEPVCFFFHSYLTLEAARFAAGFSGAVLALSSVCLFFAAG 89 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 89 (293)
+-+--+|++...+.+.+..+++.+.+.+..++++.++... .++.+... |.+.
T Consensus 40 ~pD~~Tq~fL~ns~~~s~n~f~ql~h~l~~sils~fms~T--dING~lgr--------------GsMF------------ 91 (288)
T KOG3987|consen 40 EPDATTQSFLENSKALSANIFTQLWHALARSILSFFMSQT--DINGFLGR--------------GSMF------------ 91 (288)
T ss_pred CCCccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--cccccccc--------------CceE------------
Confidence 3344567777888888888899999998888777655543 22222221 2211
Q ss_pred cccccCccchHHHHHHHHHhcCC-C-CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 90 NFFYSAVPLHYDMAQRMVGSVND-W-STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~~~~~~-~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
..+++..+.++..-.+ + ..+.++||+|+|.|.++..++..+. +|++++.|..|..+.++. +
T Consensus 92 -------ifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe------evyATElS~tMr~rL~kk----~ 154 (288)
T KOG3987|consen 92 -------IFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE------EVYATELSWTMRDRLKKK----N 154 (288)
T ss_pred -------EecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH------HHHHHHhhHHHHHHHhhc----C
Confidence 2344444555543322 2 3457899999999999999988765 799999999987766543 2
Q ss_pred CCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccC-CcEEEE
Q 022698 168 VQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKP-GGVGVV 235 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~ 235 (293)
.. | .-..++. ..+-+||+|.|.+.+.... ++..+++.++.+|+| +|++++
T Consensus 155 yn--V-l~~~ew~---~t~~k~dli~clNlLDRc~------------~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 155 YN--V-LTEIEWL---QTDVKLDLILCLNLLDRCF------------DPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred Cc--e-eeehhhh---hcCceeehHHHHHHHHhhc------------ChHHHHHHHHHHhccCCCcEEE
Confidence 11 1 1112222 2345799999999988776 888999999999999 898776
No 189
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.3e-08 Score=85.90 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=109.5
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF 184 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 184 (293)
.++..+ +..|+.+|+|-|+|+|.++.++++..... .+++..|+.+...+.|.+.++..++.+++.+...|+....+
T Consensus 96 ~I~~~L-~i~PGsvV~EsGTGSGSlShaiaraV~pt---Ghl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 96 MILSML-EIRPGSVVLESGTGSGSLSHAIARAVAPT---GHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHh-cCCCCCEEEecCCCcchHHHHHHHhhCcC---cceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 344444 47899999999999999999999987653 59999999999999999999999999999999999987554
Q ss_pred C--CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCc-EEEEEcC--CCchHHHHHHHHcCCcceEEe
Q 022698 185 G--DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGG-VGVVWDL--LHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 185 ~--~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~--~~~~~~~~~l~~~gf~~~~~~ 259 (293)
. +..+|.|+...| .|-..+..++.+||.+| +++-... -+.+...+.|++.||..++..
T Consensus 172 ~~ks~~aDaVFLDlP-----------------aPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLP-----------------APWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred cccccccceEEEcCC-----------------ChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence 3 578999998644 55566677777899877 4443221 134467888999999999998
Q ss_pred eeec
Q 022698 260 ERVT 263 (293)
Q Consensus 260 ~~~~ 263 (293)
+.+.
T Consensus 235 Ev~~ 238 (314)
T KOG2915|consen 235 EVLL 238 (314)
T ss_pred Eeeh
Confidence 8766
No 190
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.99 E-value=3.8e-09 Score=95.42 Aligned_cols=107 Identities=20% Similarity=0.313 Sum_probs=72.3
Q ss_pred hcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 87 AAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 87 ~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
....|+..+....+.+.+.+++.+.. .++ +|||+.||.|.+++.++... .+|+|+|+++.+++.|++|++.+
T Consensus 170 ~~~sFfQvN~~~~~~l~~~~~~~l~~-~~~-~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~Na~~N 241 (352)
T PF05958_consen 170 SPGSFFQVNPEQNEKLYEQALEWLDL-SKG-DVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARENAKLN 241 (352)
T ss_dssp ETTS---SBHHHHHHHHHHHHHHCTT--TT-EEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHHHHHHT
T ss_pred CCCcCccCcHHHHHHHHHHHHHHhhc-CCC-cEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHHHHHHc
Confidence 34556666666667788888887753 333 89999999999999998764 49999999999999999999999
Q ss_pred CCCCceEEEEcCCCCCC----------------CCCCcccEEEecchhhhhc
Q 022698 167 GVQEYVTAREGDVRSLP----------------FGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~----------------~~~~~fD~Iv~~~~~~~~~ 202 (293)
++ ++++|...++.++. .....+|+|+..||=..+.
T Consensus 242 ~i-~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 242 GI-DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp T---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred CC-CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 98 46999988765431 1123689999988755443
No 191
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.98 E-value=9.7e-09 Score=83.07 Aligned_cols=123 Identities=19% Similarity=0.141 Sum_probs=92.4
Q ss_pred cchHHHHHHHHHhcCC-CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 97 PLHYDMAQRMVGSVND-WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
|....+-+.+...+.+ .-.+.++||+-+|||.+++..+++.. .+++.+|.+..++...++|.+..+...++.++
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-----~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~ 98 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-----ARVVFVEKDRKAVKILKENLKALGLEGEARVL 98 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-----ceEEEEecCHHHHHHHHHHHHHhCCccceEEE
Confidence 3444555666666665 35678999999999999998887743 59999999999999999999999877889999
Q ss_pred EcCCCCC-C-CC-CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHH--HHHcccCCcEEEE
Q 022698 176 EGDVRSL-P-FG-DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGE--MVRVLKPGGVGVV 235 (293)
Q Consensus 176 ~~d~~~~-~-~~-~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~ 235 (293)
..|+... + .. .++||+|+..|||+.-- -+....+.. -..+|+|+|.+++
T Consensus 99 ~~da~~~L~~~~~~~~FDlVflDPPy~~~l-----------~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 99 RNDALRALKQLGTREPFDLVFLDPPYAKGL-----------LDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred eecHHHHHHhcCCCCcccEEEeCCCCccch-----------hhHHHHHHHHHhcCCcCCCcEEEE
Confidence 9998743 1 11 23599999999998321 022233333 3467999999988
No 192
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.1e-08 Score=90.58 Aligned_cols=152 Identities=25% Similarity=0.232 Sum_probs=105.7
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
...+...+....++.+|||++++.|.-|.++++...+. +..|+++|+|+.-+...+.|+++.|+.+ +.....|...+
T Consensus 144 sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~--~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~ 220 (355)
T COG0144 144 ASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENE--GAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRL 220 (355)
T ss_pred HHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCC--CceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccc
Confidence 33444455556788999999999999999999998753 2467999999999999999999999865 78888887654
Q ss_pred C---CCCCcccEEEecchhhhhcc---ccC---cchhh----hHHHHHHHHHHHHHcccCCcEEEEEcCCCc----hHHH
Q 022698 183 P---FGDNYFDVVVSAAFFHTVGK---EYG---HRTVE----AAAERMRVLGEMVRVLKPGGVGVVWDLLHV----PEYV 245 (293)
Q Consensus 183 ~---~~~~~fD~Iv~~~~~~~~~~---~~~---~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~ 245 (293)
+ ...++||.|++..|...... .|. ..... -..-..+++..+.+.|||||.|+++++... +++.
T Consensus 221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV 300 (355)
T COG0144 221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVV 300 (355)
T ss_pred cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHH
Confidence 3 12236999999877543221 111 11111 112234689999999999999999777643 3444
Q ss_pred H-HHHHc-CCcceE
Q 022698 246 R-RLQEL-KMEDIR 257 (293)
Q Consensus 246 ~-~l~~~-gf~~~~ 257 (293)
+ .+++. +|+...
T Consensus 301 ~~~L~~~~~~~~~~ 314 (355)
T COG0144 301 ERFLERHPDFELEP 314 (355)
T ss_pred HHHHHhCCCceeec
Confidence 4 44443 444433
No 193
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=1.3e-09 Score=83.22 Aligned_cols=96 Identities=26% Similarity=0.298 Sum_probs=73.7
Q ss_pred chHHHHHHHHHhcCC---CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 98 LHYDMAQRMVGSVND---WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
..++++..++..+.. --.+++++|+|||.|-+....+.. . ...++|+||.|++++.+.+|+....++ +.+
T Consensus 28 T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~----~e~vlGfDIdpeALEIf~rNaeEfEvq--idl 100 (185)
T KOG3420|consen 28 TRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-K----NESVLGFDIDPEALEIFTRNAEEFEVQ--IDL 100 (185)
T ss_pred CcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-C----CceEEeeecCHHHHHHHhhchHHhhhh--hhe
Confidence 334455555444321 135678999999999988444322 2 358999999999999999999998876 799
Q ss_pred EEcCCCCCCCCCCcccEEEecchhhh
Q 022698 175 REGDVRSLPFGDNYFDVVVSAAFFHT 200 (293)
Q Consensus 175 ~~~d~~~~~~~~~~fD~Iv~~~~~~~ 200 (293)
+++|+.++.+..+.||.++.|||+.-
T Consensus 101 Lqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 101 LQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred eeeeccchhccCCeEeeEEecCCCCc
Confidence 99999997766789999999999854
No 194
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.90 E-value=6.8e-09 Score=87.46 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=87.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCcccEEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYFDVVV 193 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~Iv 193 (293)
..+||||||.|.+...+|+..| ...++|+|+....+..+.+.+...++. ++.+++.|+..+- .++++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP----~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP----EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC----CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 4799999999999999999988 468999999999999999999999884 6999999987632 3456999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+.|=-|.. ..+.+- .--...+++.+.+.|+|||.+.+.+
T Consensus 125 i~FPDPWpK-kRH~KR---Rl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPK-KRHHKR---RLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EECCCCCCC-cccccc---ccCCHHHHHHHHHHccCCCEEEEEe
Confidence 986633322 111000 0012468999999999999999844
No 195
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.89 E-value=2.5e-08 Score=88.85 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhh---cCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEc
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKK---TGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREG 177 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~ 177 (293)
+++.+++.+. ..++.+|+|.+||+|.+...+...+.. .....+++|+|+++.++..++-|+...+.... ..+...
T Consensus 34 i~~l~~~~~~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 34 IVDLMVKLLN-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHT-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHhhhh-ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 4455555553 456678999999999999988876410 01146999999999999999988766654332 457888
Q ss_pred CCCCCCCC--CCcccEEEecchhhhh--cccc-----Ccc--hhhhHHHHHHHHHHHHHcccCCcEEEEEcC------C-
Q 022698 178 DVRSLPFG--DNYFDVVVSAAFFHTV--GKEY-----GHR--TVEAAAERMRVLGEMVRVLKPGGVGVVWDL------L- 239 (293)
Q Consensus 178 d~~~~~~~--~~~fD~Iv~~~~~~~~--~~~~-----~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------~- 239 (293)
|....+.. ..+||+|++|||+... .... ... ..........++..+.+.|++||++.++-. .
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~ 192 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSS 192 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGST
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccc
Confidence 87654422 4689999999999765 1100 000 000011223588889999999998766321 1
Q ss_pred CchHHHHHHHHcC
Q 022698 240 HVPEYVRRLQELK 252 (293)
Q Consensus 240 ~~~~~~~~l~~~g 252 (293)
....+++.|.+.+
T Consensus 193 ~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 193 SEKKIRKYLLENG 205 (311)
T ss_dssp HHHHHHHHHHHHE
T ss_pred hHHHHHHHHHhhc
Confidence 1235666666554
No 196
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=3e-08 Score=87.93 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|+|+-+|-|.+++.+++.-. .+|+++|+||.+++.+++|++.|++.+++..+++|....+...+.+|.|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-----~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-----PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-----ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEE
Confidence 3578999999999999999987732 35999999999999999999999998889999999998764447899999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchH
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPE 243 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 243 (293)
.+.|. ....++..+.+.+++||++-+++..+..+
T Consensus 262 m~~p~----------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 262 MGLPK----------------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred eCCCC----------------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 98764 33467777888999999998877655443
No 197
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.85 E-value=2.9e-08 Score=85.68 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-----ceEEEEcCCCC------C
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-----YVTAREGDVRS------L 182 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-----~v~~~~~d~~~------~ 182 (293)
.+...++|+|||-|.-++-+-+.. -..++|+||++..+++|+++.+...-.. .+.|+.+|-.. +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-----I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-----IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-----ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 456679999999999887665442 2489999999999999998876432111 26888888754 2
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHc
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQEL 251 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~ 251 (293)
++.+.+||+|-|-.++|.. ++..+....+++++.++|+|||.++- +......+...|++.
T Consensus 191 e~~dp~fDivScQF~~HYa--------Fetee~ar~~l~Nva~~LkpGG~FIg-TiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYA--------FETEESARIALRNVAKCLKPGGVFIG-TIPDSDVIIKRLRAG 250 (389)
T ss_pred cCCCCCcceeeeeeeEeee--------eccHHHHHHHHHHHHhhcCCCcEEEE-ecCcHHHHHHHHHhc
Confidence 2345569999998887754 22344677899999999999999876 334455666666655
No 198
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=2.4e-08 Score=85.19 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=81.2
Q ss_pred cccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc
Q 022698 92 FYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY 171 (293)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~ 171 (293)
++.++-......+.+++... ..++.+|||||+|.|.+|..|++. +.+|+++|+++.+++..++.... .++
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~---~~n 77 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFAP---YDN 77 (259)
T ss_pred cccccccCHHHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhccc---ccc
Confidence 44455556667788887775 455789999999999999999987 35899999999999988888652 356
Q ss_pred eEEEEcCCCCCCCCCC-cccEEEecchhhhhc
Q 022698 172 VTAREGDVRSLPFGDN-YFDVVVSAAFFHTVG 202 (293)
Q Consensus 172 v~~~~~d~~~~~~~~~-~fD~Iv~~~~~~~~~ 202 (293)
++++.+|+...+++.- .++.||+|.||+-..
T Consensus 78 ~~vi~~DaLk~d~~~l~~~~~vVaNlPY~Iss 109 (259)
T COG0030 78 LTVINGDALKFDFPSLAQPYKVVANLPYNISS 109 (259)
T ss_pred eEEEeCchhcCcchhhcCCCEEEEcCCCcccH
Confidence 9999999998776532 689999999998654
No 199
>PLN02823 spermine synthase
Probab=98.85 E-value=1.7e-08 Score=90.07 Aligned_cols=111 Identities=20% Similarity=0.182 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC---CCCceEEEEcCCCCC-CCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG---VQEYVTAREGDVRSL-PFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD 190 (293)
.+.+||.||+|.|..+..+++..+ ..+++++|+++.+++.+++.+..++ -.++++++..|.... ....++||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~----~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT----VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCcc
Confidence 456899999999999988887533 3589999999999999999876432 246899999998774 22356899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHH-HHHHcccCCcEEEE
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLG-EMVRVLKPGGVGVV 235 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~ 235 (293)
+|++..+ .... .+.. ..--..++++ .+.+.|+|||++++
T Consensus 179 vIi~D~~-dp~~--~~~~---~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 179 VIIGDLA-DPVE--GGPC---YQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred EEEecCC-Cccc--cCcc---hhhccHHHHHHHHHHhcCCCcEEEE
Confidence 9998732 1100 0000 0001246887 88999999999876
No 200
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.85 E-value=2.3e-08 Score=84.43 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
++.....+++... ..++..|||+|.|||..+..++.. +.+|+|+|+++.|+...+++.+....+++.+++.+|
T Consensus 43 Np~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD 115 (315)
T KOG0820|consen 43 NPLVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGD 115 (315)
T ss_pred CHHHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecc
Confidence 3556666776653 678889999999999999999877 569999999999999999998877666889999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhc
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
+...++ ..||.+|+|.||....
T Consensus 116 ~lK~d~--P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 116 FLKTDL--PRFDGCVSNLPYQISS 137 (315)
T ss_pred cccCCC--cccceeeccCCccccC
Confidence 988654 4599999998886543
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.84 E-value=5.7e-09 Score=83.06 Aligned_cols=76 Identities=29% Similarity=0.345 Sum_probs=57.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCc-ccEEEe
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNY-FDVVVS 194 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~-fD~Iv~ 194 (293)
.|+|+.||.|..++.+++.+. +|+++|+++..++.++.|++..|+.+++.++++|+.+.. ..... +|+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~------~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD------RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHhCC------eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 699999999999999998854 899999999999999999999999899999999998753 11122 899999
Q ss_pred cchhh
Q 022698 195 AAFFH 199 (293)
Q Consensus 195 ~~~~~ 199 (293)
+||..
T Consensus 76 SPPWG 80 (163)
T PF09445_consen 76 SPPWG 80 (163)
T ss_dssp ---BS
T ss_pred CCCCC
Confidence 99964
No 202
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.84 E-value=3.8e-08 Score=93.83 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcC----CCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTG----SLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG 185 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~----~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~ 185 (293)
...+|||.|||+|.+...++..++... ....++|+|+++.++..++.++...+. ....+...|..... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 345899999999999999998876321 125899999999999999999876651 12444545533211 11
Q ss_pred CCcccEEEecchhhhhc
Q 022698 186 DNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~ 202 (293)
.++||+|++||||....
T Consensus 110 ~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 110 LDLFDIVITNPPYGRLK 126 (524)
T ss_pred cCcccEEEeCCCccccC
Confidence 25799999999997654
No 203
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.82 E-value=2e-08 Score=87.45 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCCC----CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-CCCCceEEE
Q 022698 101 DMAQRMVGSVNDWS----TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-GVQEYVTAR 175 (293)
Q Consensus 101 ~~~~~l~~~~~~~~----~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~~~~~v~~~ 175 (293)
....++.+.+.... ..-++||||||..++=-.|..... +++++|+||++.+++.|++|.+.| ++.++|+++
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~----~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY----GWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc----CCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 34455555554322 245799999999988544544433 589999999999999999999999 898999998
Q ss_pred EcCCCCC-----CCCCCcccEEEecchhhhhccccCcchhhh---------------------------HHHHHHHHHHH
Q 022698 176 EGDVRSL-----PFGDNYFDVVVSAAFFHTVGKEYGHRTVEA---------------------------AAERMRVLGEM 223 (293)
Q Consensus 176 ~~d~~~~-----~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~l~~~ 223 (293)
...-... ......||+.+||||++....+........ ...-..|++++
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rM 239 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRM 239 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----SS--------------------------------TTTTHHHHTHHHHHHHH
T ss_pred EcCCccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHH
Confidence 7643221 122458999999999987664321100000 00011244444
Q ss_pred HH---cccCCcEEEEEcC----CCchHHHHHHHHcCCcceEEeeeeccceecceeeee
Q 022698 224 VR---VLKPGGVGVVWDL----LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSF 274 (293)
Q Consensus 224 ~~---~LkpgG~l~~~~~----~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~ 274 (293)
.+ .++. -+.++... ...+.+...|++.|-..+.+.+...|.. .++++.+
T Consensus 240 I~ES~~~~~-~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e~~QG~t-~rw~lAW 295 (299)
T PF05971_consen 240 IKESLQLKD-QVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTEMCQGQT-KRWILAW 295 (299)
T ss_dssp HHHHHHHGG-GEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEEEETTE-EEEEEEE
T ss_pred HHHHHHhCC-CcEEEeecccCcccHHHHHHHHHhcCCceEEEEEccCCce-EEEEEEE
Confidence 31 1222 23333222 2456788999999999999998888864 3444443
No 204
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.81 E-value=1.7e-08 Score=91.45 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=93.8
Q ss_pred cccccCccchHHHHHHHHHhcCCCCC---CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 90 NFFYSAVPLHYDMAQRMVGSVNDWST---VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~~~~~~~~~---~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
-||......+.++.-.++........ ..+|||+.||+|..++.++.+.+. ..+|+++|+|+.+++.+++|++.+
T Consensus 16 vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~g---a~~Vv~nD~n~~Av~~i~~N~~~N 92 (374)
T TIGR00308 16 VFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEG---VREVFANDINPKAVESIKNNVEYN 92 (374)
T ss_pred cccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHh
Confidence 35555555666655544443322122 258999999999999999887431 258999999999999999999998
Q ss_pred CCCCceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 167 GVQEYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 167 ~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+.. ++++.+.|+..+-. ...+||+|...| +. .+..++..+.+.+++||.+++.
T Consensus 93 ~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG---------------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 93 SVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-FG---------------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-CC---------------CcHHHHHHHHHhcccCCEEEEE
Confidence 864 58899999876421 135799999987 42 2346888899999999999985
No 205
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.80 E-value=9.2e-08 Score=84.02 Aligned_cols=100 Identities=21% Similarity=0.308 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.....+|+|.|.|..+..+..++| ++-+++.....+..+..+.. .| |+.+.+|+..- .|. -|+|+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp------~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~--~daI~m 242 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYP------HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK--GDAIWM 242 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCC------CCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC--cCeEEE
Confidence 356899999999999999998776 68888888887776666654 44 67888888774 333 479999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
-..+|++. +++...+|++++..|+|||.+++++.
T Consensus 243 kWiLhdwt----------DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 243 KWILHDWT----------DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EeecccCC----------hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 99999998 55899999999999999999999664
No 206
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.80 E-value=1.6e-07 Score=77.39 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhcCCCC---CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 99 HYDMAQRMVGSVNDWS---TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~---~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
..-+++|+.+...... ...++|||||=+......-.. -..|+.+|+++. . -.+.
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~-------~fdvt~IDLns~----------~------~~I~ 88 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG-------WFDVTRIDLNSQ----------H------PGIL 88 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccccC-------ceeeEEeecCCC----------C------CCce
Confidence 3446666665544322 236899999986654332211 247999999874 1 2467
Q ss_pred EcCCCCCCC---CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcE-----EEEEcC---------
Q 022698 176 EGDVRSLPF---GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV-----GVVWDL--------- 238 (293)
Q Consensus 176 ~~d~~~~~~---~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~--------- 238 (293)
++|+.+.|. ++++||+|+++.++..+| +....-+.++++++.|+|+|. |+++-+
T Consensus 89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP---------~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy 159 (219)
T PF11968_consen 89 QQDFMERPLPKNESEKFDVISLSLVLNFVP---------DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY 159 (219)
T ss_pred eeccccCCCCCCcccceeEEEEEEEEeeCC---------CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc
Confidence 888888765 367899999999999988 233556799999999999999 777533
Q ss_pred CCchHHHHHHHHcCCcceEEeeeeccceecceeeeeecCC
Q 022698 239 LHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPS 278 (293)
Q Consensus 239 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (293)
...+.+.++|...||..++.++ .... .++.+++..
T Consensus 160 ~~~~~l~~im~~LGf~~~~~~~--~~Kl---~y~l~r~~~ 194 (219)
T PF11968_consen 160 MTEERLREIMESLGFTRVKYKK--SKKL---AYWLFRKSG 194 (219)
T ss_pred cCHHHHHHHHHhCCcEEEEEEe--cCeE---EEEEEeecC
Confidence 2345788999999999887643 2322 455555543
No 207
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=5.5e-08 Score=80.42 Aligned_cols=105 Identities=27% Similarity=0.283 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-----CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-----FGDN 187 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~ 187 (293)
..+++.||||.=+|.-++.++..+|+. .+|+++|++++..+.+.+..+..|+..++.+++++..+. + .+.+
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~d---Grv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPED---GRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCC---ceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCC
Confidence 346799999999999999999999974 599999999999999999999999999999999998652 1 2457
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.||.++...- .++....+.++.+++|+||++++-
T Consensus 149 tfDfaFvDad---------------K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 149 TFDFAFVDAD---------------KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ceeEEEEccc---------------hHHHHHHHHHHHhhcccccEEEEe
Confidence 8999997521 225568899999999999999983
No 208
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.77 E-value=1.2e-07 Score=82.28 Aligned_cols=123 Identities=17% Similarity=0.207 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.++.|||+|||+|.++...+..- ..+|++++-| +|.+.|++..+.|.+.+++.++.+-+++..++ ++.|+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-----A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-----AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-----cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEe
Confidence 56789999999999987777653 3599999986 57889999999999999999999999987664 57999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE-E------cCCCchHHHHHHHHcCCc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV-W------DLLHVPEYVRRLQELKME 254 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~------~~~~~~~~~~~l~~~gf~ 254 (293)
-|.-..+- .+...+.+-.+++.|+|.|.++- + .+....-+.+.+.++.|-
T Consensus 250 EPMG~mL~----------NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFW 306 (517)
T KOG1500|consen 250 EPMGYMLV----------NERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFW 306 (517)
T ss_pred ccchhhhh----------hHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhh
Confidence 76644433 11334455556799999998763 1 111222366666666543
No 209
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.73 E-value=4.3e-07 Score=80.45 Aligned_cols=111 Identities=11% Similarity=0.096 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCce--EEEEcCCCCC----CC--C
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYV--TAREGDVRSL----PF--G 185 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v--~~~~~d~~~~----~~--~ 185 (293)
.++..++|+|||+|.-+..|+..+...+....++++|+|.++++.+.+++..... +.+ .-+++|..+. +. .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhcccccc
Confidence 4556899999999999999999887544457899999999999999999873322 224 4477877552 11 1
Q ss_pred CCcccEEEec-chhhhhccccCcchhhhHHHHHHHHHHHHH-cccCCcEEEE
Q 022698 186 DNYFDVVVSA-AFFHTVGKEYGHRTVEAAAERMRVLGEMVR-VLKPGGVGVV 235 (293)
Q Consensus 186 ~~~fD~Iv~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~~ 235 (293)
.....+++.. ..+..++ +.+...+++++++ .|+|||.|++
T Consensus 154 ~~~~r~~~flGSsiGNf~----------~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFS----------RPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEEeCccccCCC----------HHHHHHHHHHHHHhhCCCCCEEEE
Confidence 2235566653 3555555 3467789999999 9999999887
No 210
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.73 E-value=2.6e-07 Score=75.54 Aligned_cols=99 Identities=23% Similarity=0.224 Sum_probs=81.0
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecch
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAF 197 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 197 (293)
+++|||+|.|--++.++-..| ..+++.+|.+..-+...+......++. ++++++..+++ +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p----~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP----DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T----TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCC----CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeehh
Confidence 899999999999999998888 469999999999999999999999984 69999999988 444678999999754
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
- ....+++-+...+++||.+++.--
T Consensus 125 ~----------------~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 125 A----------------PLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp S----------------SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred c----------------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3 344677888899999999888653
No 211
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.72 E-value=4.5e-08 Score=85.14 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=82.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--C-CCceEEEEcCCCCCC-CCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--V-QEYVTAREGDVRSLP-FGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~fD~I 192 (293)
++||-||.|.|..+..++++.+ -.+++.+||++..++.+++.+.... . .+|++++..|..++- ....+||+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~----ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP----VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC----cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 6999999999999999998865 3599999999999999999876542 2 378999999987742 123479999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
++...=. .. ++... --.++++.+++.|+++|+++.-
T Consensus 154 i~D~tdp-~g--p~~~L-----ft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDP-VG--PAEAL-----FTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCC-CC--ccccc-----CCHHHHHHHHHhcCCCcEEEEe
Confidence 9863211 11 11111 1258999999999999999884
No 212
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.71 E-value=2.3e-07 Score=77.14 Aligned_cols=122 Identities=19% Similarity=0.136 Sum_probs=90.3
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCc-ccEEEecch
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNY-FDVVVSAAF 197 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~Iv~~~~ 197 (293)
|.||||-.|.+++.|++.-. ..+++++|+++.-++.|+++.+..++.++++++.+|..+. +..+. .|.|+...+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecC
Confidence 68999999999999998743 3589999999999999999999999999999999997762 33333 788886543
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
=.. -..+++.+....++....|++........+++.|.+.||..++-.
T Consensus 76 GG~--------------lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 76 GGE--------------LIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp -HH--------------HHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred CHH--------------HHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeE
Confidence 221 335677777777777778888888888899999999999876543
No 213
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.70 E-value=1.3e-07 Score=89.34 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I 192 (293)
....+||||||.|.++..+|...| ...++|+|++...+..+.+.+...++ .++.+...|+..+. ++++++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p----~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP----DALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEE
Confidence 355799999999999999999987 46899999999999988888887776 46888888875322 567889999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcC-Ccce
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELK-MEDI 256 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~g-f~~~ 256 (293)
..+.|=-|.......+=. -...+++.+++.|+|||.+.+.+... .....+.+.+.+ |+.+
T Consensus 422 ~i~FPDPWpKkrh~krRl----~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRI----FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred EEECCCCCCCCCCccccc----cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence 998664332211100000 12468999999999999998854321 122344555554 6543
No 214
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.6e-07 Score=76.42 Aligned_cols=103 Identities=22% Similarity=0.266 Sum_probs=80.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC---------CCCceEEEEcCCCCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG---------VQEYVTAREGDVRSLP 183 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~---------~~~~v~~~~~d~~~~~ 183 (293)
+.|+.+.||+|+|||.++..++..+...| ...+|+|.-++.++.+++|+...- -..++.++.+|.+...
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g--~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATG--GNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCC--ccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 46788999999999999999987766433 355999999999999999976542 1245788999998865
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.+..+||.|.+...-. ..-+++...|+|||.+++
T Consensus 158 ~e~a~YDaIhvGAaa~------------------~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 158 AEQAPYDAIHVGAAAS------------------ELPQELLDQLKPGGRLLI 191 (237)
T ss_pred CccCCcceEEEccCcc------------------ccHHHHHHhhccCCeEEE
Confidence 5667899999974433 233556678999999888
No 215
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.67 E-value=4.7e-07 Score=76.51 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=60.4
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHH-HHHHHHhcCCCCce-EEEEcCCCCC
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLS-TLRTAKMEGVQEYV-TAREGDVRSL 182 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~-a~~~~~~~~~~~~v-~~~~~d~~~~ 182 (293)
.+++......++.++||+|||+|.++..+++.- ..+|+|+|+++.++.. .+++ .++ .+...|+...
T Consensus 65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g-----a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~ 132 (228)
T TIGR00478 65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG-----AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYV 132 (228)
T ss_pred HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccC
Confidence 344444322356789999999999999888752 2589999999987765 2222 112 2333444432
Q ss_pred CC-----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 183 PF-----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 183 ~~-----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.. .-..+|+++++. ...+..+.+.|+| |.+++
T Consensus 133 ~~~~~~~d~~~~DvsfiS~--------------------~~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 133 TPADIFPDFATFDVSFISL--------------------ISILPELDLLLNP-NDLTL 169 (228)
T ss_pred CHhHcCCCceeeeEEEeeh--------------------HhHHHHHHHHhCc-CeEEE
Confidence 21 112456555432 2356778888999 76654
No 216
>PRK00536 speE spermidine synthase; Provisional
Probab=98.66 E-value=1.9e-07 Score=80.31 Aligned_cols=132 Identities=13% Similarity=0.032 Sum_probs=87.6
Q ss_pred hcccccccchhhhhhHhhhcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEE
Q 022698 69 AAGFSGAVLALSSVCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVG 148 (293)
Q Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~ 148 (293)
.+..-|..+.++.++ .....+|.+. +-++.-.+ ..+ ..+++||=||.|.|..++.++++ + .+|+.
T Consensus 35 es~~fGr~LvLD~~~-~te~dEfiYH-----EmLvHppl--~~h-~~pk~VLIiGGGDGg~~REvLkh-~-----~~v~m 99 (262)
T PRK00536 35 KSKDFGEIAMLNKQL-LFKNFLHIES-----ELLAHMGG--CTK-KELKEVLIVDGFDLELAHQLFKY-D-----THVDF 99 (262)
T ss_pred EccccccEEEEeeee-eecchhhhHH-----HHHHHHHH--hhC-CCCCeEEEEcCCchHHHHHHHCc-C-----CeeEE
Confidence 344456666666334 2344444432 22222111 122 44689999999999999999887 2 39999
Q ss_pred EeCCHHHHHHHHHHHHhc---CCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHH
Q 022698 149 LDCKKRTTLSTLRTAKME---GVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVR 225 (293)
Q Consensus 149 vDis~~~l~~a~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (293)
+||++..++.+++.+... --++|++++.. +.+ ...++||+|++... ....+++.+.+
T Consensus 100 VeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~-----------------~~~~fy~~~~~ 159 (262)
T PRK00536 100 VQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE-----------------PDIHKIDGLKR 159 (262)
T ss_pred EECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC-----------------CChHHHHHHHH
Confidence 999999999999954331 11357777752 221 12368999998743 12478899999
Q ss_pred cccCCcEEEE
Q 022698 226 VLKPGGVGVV 235 (293)
Q Consensus 226 ~LkpgG~l~~ 235 (293)
.|+|||.++.
T Consensus 160 ~L~~~Gi~v~ 169 (262)
T PRK00536 160 MLKEDGVFIS 169 (262)
T ss_pred hcCCCcEEEE
Confidence 9999999988
No 217
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.65 E-value=5.2e-07 Score=78.34 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=80.5
Q ss_pred ccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC
Q 022698 91 FFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE 170 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~ 170 (293)
.++.++-.++.+++.+++.+. ..++..|+|+|+|.|.++..|++.. .+++++|+++...+..++.... .+
T Consensus 7 ~~gQnFL~~~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~------~~v~~vE~d~~~~~~L~~~~~~---~~ 76 (262)
T PF00398_consen 7 SLGQNFLVDPNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG------KRVIAVEIDPDLAKHLKERFAS---NP 76 (262)
T ss_dssp GCTSSEEEHHHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS------SEEEEEESSHHHHHHHHHHCTT---CS
T ss_pred CCCcCeeCCHHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc------CcceeecCcHhHHHHHHHHhhh---cc
Confidence 456666678889999998885 4577899999999999999998874 4999999999999988887662 35
Q ss_pred ceEEEEcCCCCCCCCC---CcccEEEecchhhh
Q 022698 171 YVTAREGDVRSLPFGD---NYFDVVVSAAFFHT 200 (293)
Q Consensus 171 ~v~~~~~d~~~~~~~~---~~fD~Iv~~~~~~~ 200 (293)
+++++.+|+.++.... +....|++|.||+.
T Consensus 77 ~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 77 NVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp SEEEEES-TTTSCGGGHCSSSEEEEEEEETGTG
T ss_pred cceeeecchhccccHHhhcCCceEEEEEecccc
Confidence 6999999999876433 45679999999843
No 218
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.62 E-value=4.5e-08 Score=89.60 Aligned_cols=132 Identities=23% Similarity=0.258 Sum_probs=80.8
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH-HHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT-AKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
.+||+|||+|.++..|..+ .|+.+-+.+.--..++.. +.+.|+...+. ..--..+|++++.||+|.|..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r--------~V~t~s~a~~d~~~~qvqfaleRGvpa~~~--~~~s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER--------NVTTMSFAPNDEHEAQVQFALERGVPAMIG--VLGSQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred EEEeccceeehhHHHHhhC--------CceEEEcccccCCchhhhhhhhcCcchhhh--hhccccccCCccchhhhhccc
Confidence 5899999999999988865 445544443322222221 22235432111 111245789999999999998
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc-----------hHHHHHHHHcCCcceEEeeeeccc
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV-----------PEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
....... +-..++-++-|+|+|||.++.+..... ..+.++.+...++.+....
T Consensus 190 c~i~W~~-----------~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~----- 253 (506)
T PF03141_consen 190 CLIPWHP-----------NDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKG----- 253 (506)
T ss_pred ccccchh-----------cccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeC-----
Confidence 7765441 223578889999999999998654322 1244444556666554432
Q ss_pred eecceeeeeecCCC
Q 022698 266 MVSSHIVSFRKPSQ 279 (293)
Q Consensus 266 ~~~~~~~~~~~~~~ 279 (293)
.+..++||..
T Consensus 254 ----~~aIwqKp~~ 263 (506)
T PF03141_consen 254 ----DTAIWQKPTN 263 (506)
T ss_pred ----CEEEEeccCC
Confidence 3566676654
No 219
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.61 E-value=3.4e-07 Score=80.27 Aligned_cols=142 Identities=22% Similarity=0.212 Sum_probs=98.9
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP- 183 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~- 183 (293)
.+...+....++.+|||++++.|.-+.+++..+... ..+++.|+++..+...+.++++.|.. ++.....|.....
T Consensus 75 ~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~---g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~ 150 (283)
T PF01189_consen 75 QLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNK---GEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDP 150 (283)
T ss_dssp HHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTT---SEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHH
T ss_pred ccccccccccccccccccccCCCCceeeeeecccch---hHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccc
Confidence 333333345678899999999999999999988753 59999999999999999999999874 4777777776541
Q ss_pred -CCCCcccEEEecchhhhhc---cccC-------cchhhhHHHHHHHHHHHHHcc----cCCcEEEEEcCCC----chHH
Q 022698 184 -FGDNYFDVVVSAAFFHTVG---KEYG-------HRTVEAAAERMRVLGEMVRVL----KPGGVGVVWDLLH----VPEY 244 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~---~~~~-------~~~~~~~~~~~~~l~~~~~~L----kpgG~l~~~~~~~----~~~~ 244 (293)
.....||.|++..|..... ..+. .....-..-..++++.+.+.+ ||||+++.+.+.. .++.
T Consensus 151 ~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~v 230 (283)
T PF01189_consen 151 KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEV 230 (283)
T ss_dssp HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHH
T ss_pred cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHH
Confidence 2234699999987754332 1111 111111123456899999999 9999999976643 4455
Q ss_pred HHHHHH
Q 022698 245 VRRLQE 250 (293)
Q Consensus 245 ~~~l~~ 250 (293)
++.+-+
T Consensus 231 V~~fl~ 236 (283)
T PF01189_consen 231 VEKFLK 236 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 220
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.59 E-value=1.7e-06 Score=74.59 Aligned_cols=128 Identities=21% Similarity=0.192 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-----------------------------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM----------------------------- 165 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~----------------------------- 165 (293)
...+||--|||.|.++..++.. +..+.|.|.|--|+-..+-.+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v 129 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPV 129 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCce
Confidence 3568999999999999999876 46999999999987644432220
Q ss_pred ----------cCCCCceEEEEcCCCCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcE
Q 022698 166 ----------EGVQEYVTAREGDVRSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGV 232 (293)
Q Consensus 166 ----------~~~~~~v~~~~~d~~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 232 (293)
.....++....+|+.+.-.+ .++||+|+.+..+.-.+ +..+.++.+.++|||||.
T Consensus 130 ~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~------------Ni~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 130 RIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE------------NIIEYIETIEHLLKPGGY 197 (270)
T ss_pred EeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH------------HHHHHHHHHHHHhccCCE
Confidence 01112455556666554322 36899999997776655 899999999999999997
Q ss_pred EEEEcC-----------------CCchHHHHHHHHcCCcceEEee
Q 022698 233 GVVWDL-----------------LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 233 l~~~~~-----------------~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
.+=.++ ...+++.+++++.||+.++...
T Consensus 198 WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 198 WINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred EEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 764221 1246889999999999877655
No 221
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.57 E-value=1.7e-06 Score=75.54 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|||+|||+|..+.++...++. -.+++++|.|+.|++.++..++................+. .+..+.|+|++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~DLvi~ 108 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF-LPFPPDDLVIA 108 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc-ccCCCCcEEEE
Confidence 3568999999999988877777762 3589999999999999988766543211111111111111 11223499999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch------HHHHHHHHcCCcceE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP------EYVRRLQELKMEDIR 257 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~l~~~gf~~~~ 257 (293)
..++..++. .....+++.+.+.+.+ .|++++..+.. +.++.|.+.|+..+.
T Consensus 109 s~~L~EL~~----------~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 109 SYVLNELPS----------AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred ehhhhcCCc----------hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 999988872 3566788888887766 88888877654 455556566665443
No 222
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.56 E-value=2.3e-07 Score=81.26 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=72.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++..++|.+||.|..+..+++.++. ..+|+|+|.++.|++.+++++.. .+++.+++.|+.+
T Consensus 7 ll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~---~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~ 79 (296)
T PRK00050 7 LLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGP---KGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSN 79 (296)
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCC---CCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHH
Confidence 5566676664 356779999999999999999988753 35999999999999999988755 3679999999987
Q ss_pred CC--CCCC--cccEEEecchhhhh
Q 022698 182 LP--FGDN--YFDVVVSAAFFHTV 201 (293)
Q Consensus 182 ~~--~~~~--~fD~Iv~~~~~~~~ 201 (293)
+. .+.+ ++|.|+++..+...
T Consensus 80 l~~~l~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred HHHHHHcCCCccCEEEECCCcccc
Confidence 53 1222 79999987655433
No 223
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=4e-07 Score=83.43 Aligned_cols=129 Identities=20% Similarity=0.246 Sum_probs=88.8
Q ss_pred cccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 88 AGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 88 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
...||..+....+.+...+-+.+. ...+..++|+.||||.+++++++.. .+|+|+++++++++.|++|+..||
T Consensus 357 p~AFFQ~Nt~~aevLys~i~e~~~-l~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~nA~~Ng 429 (534)
T KOG2187|consen 357 PGAFFQTNTSAAEVLYSTIGEWAG-LPADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEKNAQING 429 (534)
T ss_pred CchhhccCcHHHHHHHHHHHHHhC-CCCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhhcchhcC
Confidence 344555555555556665555553 6677899999999999999999874 499999999999999999999999
Q ss_pred CCCceEEEEcCCCCC-C-CCC---Cccc-EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 168 VQEYVTAREGDVRSL-P-FGD---NYFD-VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~-~-~~~---~~fD-~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+. +.+|+++-++++ + +.. ++-+ +++.+|+=..+. ..+++.+.+.-++--.++++..
T Consensus 430 is-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh--------------~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 430 IS-NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLH--------------MKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred cc-ceeeeecchhhccchhcccCCCCCceEEEECCCccccc--------------HHHHHHHHhccCccceEEEEcC
Confidence 84 599999955553 1 111 2345 455555432221 3566666665557666776554
No 224
>PRK04148 hypothetical protein; Provisional
Probab=98.55 E-value=2.1e-06 Score=66.01 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCCh-HHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGI-LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~-~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
+.+.+.+.+.. ..+.+|||||||+|. .+..|++. +.+|+++|+++.+++.++++ + +.++..|+.
T Consensus 4 i~~~l~~~~~~-~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf 68 (134)
T PRK04148 4 IAEFIAENYEK-GKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLF 68 (134)
T ss_pred HHHHHHHhccc-ccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHh----C----CeEEECcCC
Confidence 45555555543 345789999999996 66666643 46999999999987777655 2 678999998
Q ss_pred CCCCC-CCcccEEEecch
Q 022698 181 SLPFG-DNYFDVVVSAAF 197 (293)
Q Consensus 181 ~~~~~-~~~fD~Iv~~~~ 197 (293)
+..+. -..+|+|.+..|
T Consensus 69 ~p~~~~y~~a~liysirp 86 (134)
T PRK04148 69 NPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred CCCHHHHhcCCEEEEeCC
Confidence 85432 256999998644
No 225
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.53 E-value=3.2e-07 Score=78.75 Aligned_cols=110 Identities=17% Similarity=0.070 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCC---CCceEEEEcCCCCCC-CCCC-cc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGV---QEYVTAREGDVRSLP-FGDN-YF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~---~~~v~~~~~d~~~~~-~~~~-~f 189 (293)
.+.+||=||.|.|..+..+++..+ ..+++++|+++..++.+++.+..... .+|++++..|...+- -... +|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~----~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPP----VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-----SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcCC----cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 567999999999999988876543 35999999999999999998765321 368999999987632 1233 89
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|+|+....-...+ .... --.++++.+.+.|+|||++++-
T Consensus 152 DvIi~D~~dp~~~---~~~l-----~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 152 DVIIVDLTDPDGP---APNL-----FTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEEEEESSSTTSC---GGGG-----SSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEeCCCCCCC---cccc-----cCHHHHHHHHhhcCCCcEEEEE
Confidence 9999854321111 0001 1258999999999999999883
No 226
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.52 E-value=6.3e-07 Score=76.71 Aligned_cols=133 Identities=23% Similarity=0.253 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC---------------------------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--------------------------- 167 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--------------------------- 167 (293)
.+.++||||||+-..-. +...+ ...+|+..|.++..++..++.++..+
T Consensus 56 ~g~~llDiGsGPtiy~~--lsa~~---~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQL--LSACE---WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp -EEEEEEES-TT--GGG--TTGGG---TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhh--hhHHH---hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 45689999999954422 11111 12489999999988876666543111
Q ss_pred CCCce-EEEEcCCCCCC-CCC-----CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC-
Q 022698 168 VQEYV-TAREGDVRSLP-FGD-----NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL- 239 (293)
Q Consensus 168 ~~~~v-~~~~~d~~~~~-~~~-----~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 239 (293)
+...| .++.+|+.+.+ +.. .+||+|++...+.....+ .+.....++++.++|||||.|+++...
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d--------~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKD--------LDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SS--------HHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCC--------HHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 01113 47788987743 222 259999999888766522 346788999999999999999985432
Q ss_pred ----------------CchHHHHHHHHcCCcceEEee
Q 022698 240 ----------------HVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 240 ----------------~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+.+.+.++++||...+..+
T Consensus 203 ~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 203 STYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp -SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ceeEEECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 345689999999998777663
No 227
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=2.3e-06 Score=71.23 Aligned_cols=123 Identities=24% Similarity=0.219 Sum_probs=94.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCc-ccEEEe
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNY-FDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~Iv~ 194 (293)
+.+++|||+|.|--++.++-.+| ..+++-+|....-+...+.-....++ ++++++++.++++.. ..+ ||+|+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p----~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~-~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP----DLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQ-EKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc----CCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccc-ccccCcEEEe
Confidence 57999999999999999987766 45799999999999999999888887 569999999998652 223 999999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC----CCchHHHHHHHHcCCcceEEee
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL----LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..+- +...+..-+...+++||.+++.-. ...++....+...|+....+..
T Consensus 142 RAva----------------~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~ 195 (215)
T COG0357 142 RAVA----------------SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFS 195 (215)
T ss_pred ehcc----------------chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEE
Confidence 7542 334556667789999998765322 2334566666777887776654
No 228
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.49 E-value=2.1e-07 Score=76.25 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=75.2
Q ss_pred cccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC
Q 022698 88 AGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG 167 (293)
Q Consensus 88 ~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~ 167 (293)
...|+..+.+....++..+.... ....|+|.-||.|..++..+... ..|+++|++|.-+..|+.|++..|
T Consensus 71 e~wfsvTpe~ia~~iA~~v~~~~----~~~~iidaf~g~gGntiqfa~~~------~~VisIdiDPikIa~AkhNaeiYG 140 (263)
T KOG2730|consen 71 EGWFSVTPEKIAEHIANRVVACM----NAEVIVDAFCGVGGNTIQFALQG------PYVIAIDIDPVKIACARHNAEVYG 140 (263)
T ss_pred cceEEeccHHHHHHHHHHHHHhc----CcchhhhhhhcCCchHHHHHHhC------CeEEEEeccHHHHHHHhccceeec
Confidence 33344444443333444333322 34589999999999998888774 489999999999999999999999
Q ss_pred CCCceEEEEcCCCCCC----CCCCcccEEEecchhh
Q 022698 168 VQEYVTAREGDVRSLP----FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 168 ~~~~v~~~~~d~~~~~----~~~~~fD~Iv~~~~~~ 199 (293)
+.+++.|+++|+.++. +....+|+|+.++|..
T Consensus 141 I~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwg 176 (263)
T KOG2730|consen 141 VPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWG 176 (263)
T ss_pred CCceeEEEechHHHHHHHHhhhhheeeeeecCCCCC
Confidence 9999999999998742 3344577888777643
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.42 E-value=1.8e-05 Score=65.66 Aligned_cols=150 Identities=18% Similarity=0.211 Sum_probs=98.6
Q ss_pred ccchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceE
Q 022698 96 VPLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT 173 (293)
Q Consensus 96 ~~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~ 173 (293)
.+....+...++.-+. .+.++.+||-+|+.+|+...+++.-... ...|+|+|.|+...+..-.-++.. +|+-
T Consensus 52 ~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~---~G~VYaVEfs~r~~rdL~~la~~R---~NIi 125 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGP---DGVVYAVEFSPRSMRDLLNLAKKR---PNII 125 (229)
T ss_dssp -TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHS---TTEE
T ss_pred CchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCC---CCcEEEEEecchhHHHHHHHhccC---Ccee
Confidence 3455667777765543 3568889999999999999999887764 359999999998777666555543 4577
Q ss_pred EEEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE------EcCCCch--
Q 022698 174 AREGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV------WDLLHVP-- 242 (293)
Q Consensus 174 ~~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~------~~~~~~~-- 242 (293)
-+..|+.... .--+.+|+|++.-.- .+....+..++...||+||.+++ ++....+
T Consensus 126 PIl~DAr~P~~Y~~lv~~VDvI~~DVaQ--------------p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~ 191 (229)
T PF01269_consen 126 PILEDARHPEKYRMLVEMVDVIFQDVAQ--------------PDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEE 191 (229)
T ss_dssp EEES-TTSGGGGTTTS--EEEEEEE-SS--------------TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHH
T ss_pred eeeccCCChHHhhcccccccEEEecCCC--------------hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHH
Confidence 7889988622 113579999986331 11455677888899999999887 3333332
Q ss_pred ---HHHHHHHHcCCcceEEeeeeccce
Q 022698 243 ---EYVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 243 ---~~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
+..+.|++.||+.++.. ++.+|.
T Consensus 192 vf~~e~~~L~~~~~~~~e~i-~LePy~ 217 (229)
T PF01269_consen 192 VFAEEVKKLKEEGFKPLEQI-TLEPYE 217 (229)
T ss_dssp HHHHHHHHHHCTTCEEEEEE-E-TTTS
T ss_pred HHHHHHHHHHHcCCChheEe-ccCCCC
Confidence 35666777799987765 455544
No 230
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.37 E-value=3.3e-06 Score=70.28 Aligned_cols=121 Identities=19% Similarity=0.173 Sum_probs=73.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-------hcCC-C
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-------MEGV-Q 169 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-------~~~~-~ 169 (293)
+.+.....+++.+. +.++..++|+|||.|......+...+ -.+.+|+|+.+...+.|+...+ ..+. .
T Consensus 26 i~~~~~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~----~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~ 100 (205)
T PF08123_consen 26 ISPEFVSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG----CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP 100 (205)
T ss_dssp CHHHHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB--
T ss_pred cCHHHHHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC----CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34556666777664 67788999999999999888876654 2469999999998877765432 2232 2
Q ss_pred CceEEEEcCCCCCCCC---CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 170 EYVTAREGDVRSLPFG---DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 170 ~~v~~~~~d~~~~~~~---~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.++++..+|+.+.+.. -...|+|++|+.... ++....+.+....||+|.+++-.
T Consensus 101 ~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-------------~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 101 GKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFD-------------PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--------------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ccceeeccCccccHhHhhhhcCCCEEEEeccccC-------------HHHHHHHHHHHhcCCCCCEEEEC
Confidence 4588889998764321 134799999876432 14555667777889998887653
No 231
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.35 E-value=9.2e-07 Score=79.59 Aligned_cols=136 Identities=24% Similarity=0.282 Sum_probs=110.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.+...++|+|||.|.....+.... .+.++++|.++.-+.++........+.++..++..|....|++++.||.+-
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-----~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-----KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-----cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 455589999999999988776542 368999999999888888777776776667778899999889999999999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC-----------------------------CCchHH
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL-----------------------------LHVPEY 244 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------------------~~~~~~ 244 (293)
+.....+.+ ++...+++++++++|||.++..+. ....++
T Consensus 184 ~ld~~~~~~------------~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~ 251 (364)
T KOG1269|consen 184 FLEVVCHAP------------DLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDV 251 (364)
T ss_pred EEeecccCC------------cHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccH
Confidence 999999999 999999999999999999997321 112357
Q ss_pred HHHHHHcCCcceEEeeeeccce
Q 022698 245 VRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 245 ~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
...+...||..+...++.....
T Consensus 252 ~~~~~~~~~~~~~~~~dl~~~~ 273 (364)
T KOG1269|consen 252 FDLLKSFGFEHLKLEKDLALKS 273 (364)
T ss_pred HHHHhhccchhhhhcccccCCC
Confidence 7777888888877776666544
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=2.2e-06 Score=69.20 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+..+- +.-.+++|||+|+|+|-.++..++... ..|++.|+.+...+..+-|++.|++. +.+...|...
T Consensus 67 lAR~i~~~P-etVrgkrVLd~gagsgLvaIAaa~aGA-----~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g 138 (218)
T COG3897 67 LARYIDDHP-ETVRGKRVLDLGAGSGLVAIAAARAGA-----AEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG 138 (218)
T ss_pred HHHHHhcCc-cccccceeeecccccChHHHHHHHhhh-----HHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC
Confidence 444444443 234678999999999999888776643 58999999999888888999999865 8888888765
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
++..||+|+...+++.-+ ....++. +...|+..|.-+++.
T Consensus 139 ---~~~~~Dl~LagDlfy~~~------------~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 139 ---SPPAFDLLLAGDLFYNHT------------EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred ---CCcceeEEEeeceecCch------------HHHHHHH-HHHHHHhCCCEEEEe
Confidence 356799999988776554 4456666 666666666555544
No 233
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.33 E-value=1.7e-06 Score=70.81 Aligned_cols=129 Identities=21% Similarity=0.251 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------CC-
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------FG- 185 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~- 185 (293)
.+.++||+||++|.++..+++... +..+|+|+|+.+. ... ..+.++++|+.+.. ..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~---~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGG---PAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTT---TEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred cccEEEEcCCcccceeeeeeeccc---ccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccc
Confidence 357999999999999999987751 1469999999876 111 22556666654311 11
Q ss_pred -CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE--cCCCchHHHHHHHHcCCcceEEee
Q 022698 186 -DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW--DLLHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
..++|+|+|......... ...+.....+-....+.-+...|+|||.+++- .....+++...++. .|+.+.+.+
T Consensus 88 ~~~~~dlv~~D~~~~~~g~-~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~-~F~~v~~~K 163 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGD-RNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR-CFSKVKIVK 163 (181)
T ss_dssp TTCSESEEEE-------SS-HHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH-HHHHEEEEE
T ss_pred cccCcceeccccccCCCCc-hhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh-CCeEEEEEE
Confidence 268999999863322221 01111111112233444555789999988762 22222456655544 677766654
No 234
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.28 E-value=3.5e-05 Score=64.77 Aligned_cols=132 Identities=21% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC---CCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG---DNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~ 191 (293)
.+++||-+|=..- .+++++.... ..+|+.+|+++..++..++.++..|+. ++.+..|+++ |++ .++||+
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~----~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~-~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGL----PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD-PLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT------SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTTSS-BSE
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCC----CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc-cCCHHHhcCCCE
Confidence 4679999995443 3333332211 469999999999999999999999976 9999999987 333 479999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc-------hHHHHHHHHcCCcceEEeeeecc
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV-------PEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
++.+||+-.- ....++.+....||..|...+....+. -++.+.+.+.||..-.+..++..
T Consensus 116 f~TDPPyT~~-------------G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~ 182 (243)
T PF01861_consen 116 FFTDPPYTPE-------------GLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIPDFNR 182 (243)
T ss_dssp EEE---SSHH-------------HHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEEEEEE
T ss_pred EEeCCCCCHH-------------HHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHhhhcc
Confidence 9999998542 677899999999998773333232222 24677778999998888888877
Q ss_pred cee
Q 022698 265 FMV 267 (293)
Q Consensus 265 ~~~ 267 (293)
+..
T Consensus 183 Y~g 185 (243)
T PF01861_consen 183 YEG 185 (243)
T ss_dssp B--
T ss_pred ccc
Confidence 764
No 235
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.27 E-value=1.3e-05 Score=71.94 Aligned_cols=123 Identities=23% Similarity=0.222 Sum_probs=91.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCcc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYF 189 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~f 189 (293)
..++.||||+++..|.-+.+++..+... ..|+|.|.+...+...+.|+.+.|+. +..+...|..++| ++ ++|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~---G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~-~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNT---GVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFP-GSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCC---ceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccC-ccc
Confidence 4678999999999999999999998765 49999999999999999999999974 4667778877665 33 389
Q ss_pred cEEEecchhhhhc---cccCcchhhhHHH-------HHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 190 DVVVSAAFFHTVG---KEYGHRTVEAAAE-------RMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 190 D~Iv~~~~~~~~~---~~~~~~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|-|....|..... .+...+.-....+ ..+++-.+..++++||+|+.+.+.-
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9999887765411 1222222211112 2357777888999999999966543
No 236
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.24 E-value=2.6e-05 Score=61.13 Aligned_cols=87 Identities=23% Similarity=0.371 Sum_probs=65.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEEcCCCCCCCCCCcccE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--VQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
.+..+|+|+|||.|.++..++..+++..++.+|+++|.++..++.++++.+..+ ...+..+...+..+.. .....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCeE
Confidence 456789999999999999999866654456899999999999999999888776 4455677666655432 2456788
Q ss_pred EEecchhhhh
Q 022698 192 VVSAAFFHTV 201 (293)
Q Consensus 192 Iv~~~~~~~~ 201 (293)
++....-..+
T Consensus 103 ~vgLHaCG~L 112 (141)
T PF13679_consen 103 LVGLHACGDL 112 (141)
T ss_pred EEEeecccch
Confidence 8876554443
No 237
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=0.00011 Score=60.66 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=79.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------C
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------F 184 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~ 184 (293)
+.++.+|+|+|+..|.++..+++.... +.+|+++|+.|-. ..+.|.++++|+..-+ +
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~---~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGA---GGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCC---CCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHc
Confidence 457789999999999999999888764 3469999998751 1134899999998643 2
Q ss_pred CCCcccEEEecchhhhhccccCcchhhh---HHHHHHHHHHHHHcccCCcEEEEEcCCC--chHHHHHHHHcCCcceEEe
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEA---AAERMRVLGEMVRVLKPGGVGVVWDLLH--VPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~l~~~gf~~~~~~ 259 (293)
...++|+|+|...-... |...... ..-....+.-+..+|+|||.+++-.+.. .+++...+ +..|..+++.
T Consensus 108 ~~~~~DvV~sD~ap~~~----g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~-~~~F~~v~~~ 182 (205)
T COG0293 108 GGAPVDVVLSDMAPNTS----GNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL-RRLFRKVKIF 182 (205)
T ss_pred CCCCcceEEecCCCCcC----CCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHH-HHhhceeEEe
Confidence 33457999986432110 1100000 0011234555568999999998844322 23344444 3347666654
Q ss_pred e
Q 022698 260 E 260 (293)
Q Consensus 260 ~ 260 (293)
+
T Consensus 183 K 183 (205)
T COG0293 183 K 183 (205)
T ss_pred c
Confidence 3
No 238
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.17 E-value=3.5e-05 Score=60.17 Aligned_cols=103 Identities=35% Similarity=0.417 Sum_probs=69.7
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC--CCCCC-CcccEEEec
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS--LPFGD-NYFDVVVSA 195 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~Iv~~ 195 (293)
++|+|||+|... .+....+ . ...++++|+++.++..++..... .....+.+...|... .++.. ..||++ +.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~--~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG-R--GAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC-C--CceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999976 2332221 1 13789999999999885544432 211115778888775 56655 489999 54
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
....+.. +....+.++.+.|+|+|.+++....
T Consensus 126 ~~~~~~~------------~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLL------------PPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcC------------CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 4443332 2568889999999999999885543
No 239
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.15 E-value=4.9e-06 Score=66.69 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=75.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
..+.|+|+|+|.++...++.. .+|++++.+|...+.|.+|...+|. .+++++.+|+.+..+ ...|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A------~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA------ERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHhhh------ceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHH
Confidence 579999999999987776652 4999999999999999999988876 569999999999876 4579999842
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
.=-.+- .+....++..+...|+-++.++
T Consensus 105 lDTaLi----------~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 105 LDTALI----------EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hhHHhh----------cccccHHHHHHHHHhhcCCccc
Confidence 211111 1133456777777888888776
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.14 E-value=1.1e-06 Score=65.37 Aligned_cols=103 Identities=25% Similarity=0.336 Sum_probs=44.0
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-CCCCcccEEEecch
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-FGDNYFDVVVSAAF 197 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~Iv~~~~ 197 (293)
||+|+..|..+..+++.++..+ ..+++++|..+. .+..++.++..+..++++++.+|..+. + +..+++|+|+....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 6899999999999988776532 148999999995 334555555555667799999998653 1 23478999998642
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|..+ .....++.+.+.|+|||.+++-|
T Consensus 79 -H~~~------------~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HSYE------------AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HH------------HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCHH------------HHHHHHHHHHHHcCCCeEEEEeC
Confidence 1111 45677888999999999998865
No 241
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.14 E-value=2.5e-05 Score=60.44 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=63.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHH
Q 022698 145 RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGE 222 (293)
Q Consensus 145 ~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (293)
+|+|+||.++|++..+++++..+..+++.++..+-..+. .+.+++|+++.|..|-.-. ...-....+.-...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPgg---Dk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGG---DKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS----TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCC---CCCCCcCcHHHHHHHHH
Confidence 589999999999999999999988888999998877654 2335899999996653221 11222233456778999
Q ss_pred HHHcccCCcEEEEEcCC
Q 022698 223 MVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 223 ~~~~LkpgG~l~~~~~~ 239 (293)
+.++|+|||++.++-+.
T Consensus 78 al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 78 ALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHEEEEEEEEEEE--
T ss_pred HHHhhccCCEEEEEEeC
Confidence 99999999999886655
No 242
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.12 E-value=6.3e-05 Score=62.17 Aligned_cols=125 Identities=20% Similarity=0.082 Sum_probs=96.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+.++.||||-.+.+++.|.+..+ ...+++.|+++..++.|.+++..+++.+++++..+|....-..+..+|+|+..
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~----~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNP----ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCC----cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEe
Confidence 44599999999999999998755 56999999999999999999999999999999999986532234479998865
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEE
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~ 258 (293)
..-.. -...++++-...|+-=-++++-...+..+.++.+.+.+|..+.-
T Consensus 93 GMGG~--------------lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 93 GMGGT--------------LIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAE 141 (226)
T ss_pred CCcHH--------------HHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeee
Confidence 43211 23456666666666444666666667788999999999985543
No 243
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.08 E-value=7.1e-05 Score=70.65 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
..++.+.+++.+.. .+..+|.|..||+|.+.....+.+.+......++|.|+++.....++.|.-.+++...+.....|
T Consensus 171 P~~v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 171 PREVSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred hHHHHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 34566666666654 55669999999999999988888764321267999999999999999999888875334555555
Q ss_pred CCCCCC-----CCCcccEEEecchhhhhcccc------------CcchhhhHHHH-HHHHHHHHHcccCCcEEEE
Q 022698 179 VRSLPF-----GDNYFDVVVSAAFFHTVGKEY------------GHRTVEAAAER-MRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 179 ~~~~~~-----~~~~fD~Iv~~~~~~~~~~~~------------~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~ 235 (293)
-..-|. ..++||.|++|||+....... ....+.+.... ..++..+...|+|||+..+
T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 544332 236799999999996211100 01111111122 6789999999999886554
No 244
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.06 E-value=5e-05 Score=65.77 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-MEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+.+|+=||+|.=-++..+.... .+.+..++++|+++.+.+.+++-.+ ..++..++.|+.+|..+.+..-..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~--~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQ--HGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH----HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHH--hCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 4599999999865555544421 1225689999999999999998877 556677899999999876544467999997
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
........ ++..+++..+.+.++||..+++-
T Consensus 199 AalVg~~~-----------e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALVGMDA-----------EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT-S---------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhccccc-----------chHHHHHHHHHhhCCCCcEEEEe
Confidence 65544221 25678999999999999999883
No 245
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=5.8e-06 Score=70.70 Aligned_cols=108 Identities=32% Similarity=0.530 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
..++.++... ..+..++|+|||.|..+. . ++..-+.+.|++...+..+++. +. .....+|+.
T Consensus 34 p~v~qfl~~~---~~gsv~~d~gCGngky~~----~----~p~~~~ig~D~c~~l~~~ak~~----~~---~~~~~ad~l 95 (293)
T KOG1331|consen 34 PMVRQFLDSQ---PTGSVGLDVGCGNGKYLG----V----NPLCLIIGCDLCTGLLGGAKRS----GG---DNVCRADAL 95 (293)
T ss_pred HHHHHHHhcc---CCcceeeecccCCcccCc----C----CCcceeeecchhhhhccccccC----CC---ceeehhhhh
Confidence 3455555544 346689999999996531 1 1356899999998865544432 21 257789999
Q ss_pred CCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 181 SLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 181 ~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.+|+.+.+||.+++..++||+. .......+++++.+.|+|||...+
T Consensus 96 ~~p~~~~s~d~~lsiavihhls---------T~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLS---------TRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred cCCCCCCccccchhhhhhhhhh---------hHHHHHHHHHHHHHHhcCCCceEE
Confidence 9999899999999999999986 223456799999999999998665
No 246
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.04 E-value=0.00011 Score=60.31 Aligned_cols=134 Identities=20% Similarity=0.198 Sum_probs=79.7
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-------------
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK------------- 164 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~------------- 164 (293)
+..++.++.+..+.. ..+-++.|-+||+|.+...+.-..... -..|++.|+++++++.|++|+.
T Consensus 35 LAsEi~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~--l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 35 LASEIFQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRR--LRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp HHHHHHHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGG--EEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHH--HHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 445666666665543 455689999999999987776554422 2599999999999999999975
Q ss_pred ----------------------------hcCCCCceEEEEcCCCCCC-----CCCCcccEEEecchhhhhccccCcchhh
Q 022698 165 ----------------------------MEGVQEYVTAREGDVRSLP-----FGDNYFDVVVSAAFFHTVGKEYGHRTVE 211 (293)
Q Consensus 165 ----------------------------~~~~~~~v~~~~~d~~~~~-----~~~~~fD~Iv~~~~~~~~~~~~~~~~~~ 211 (293)
..|-..-....+.|+++.. ......|+|+..-||..+. ++.+..
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t---~W~g~~ 188 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMT---SWQGEG 188 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSS---STTS--
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccc---cccCCC
Confidence 1111222567788887621 1123479999999987655 333333
Q ss_pred hHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 212 AAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 212 ~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.......++..++.+|-+++++.+++
T Consensus 189 ~~~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 189 SGGPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp -HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCcHHHHHHHHHhhCCCCcEEEEec
Confidence 33455689999999995555666644
No 247
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.03 E-value=6e-05 Score=66.56 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=96.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh---c--CC-CCceEEEEcCCCCCC-CCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM---E--GV-QEYVTAREGDVRSLP-FGD 186 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~---~--~~-~~~v~~~~~d~~~~~-~~~ 186 (293)
+...++|-+|.|.|-.++.+.+. |+ ..+++-+|.+|.|++.++++... | .. ++|++++..|+.++- -..
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~---~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~ 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQ---VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CC---cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc
Confidence 44568999999999998888754 42 35999999999999999865321 1 11 368999999987642 234
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE--EcCCCch----HHHHHHHHcCCcceEEee
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV--WDLLHVP----EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~--~~~~~~~----~~~~~l~~~gf~~~~~~~ 260 (293)
..||.|+...+=-..+ ... .---.+++.-+.+.|+++|.+++ .+....+ .+..-++++||...-.+.
T Consensus 364 ~~fD~vIVDl~DP~tp------s~~-rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv 436 (508)
T COG4262 364 DMFDVVIVDLPDPSTP------SIG-RLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHV 436 (508)
T ss_pred ccccEEEEeCCCCCCc------chh-hhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEE
Confidence 6899999753211100 000 00124688889999999999988 2222333 255667899998777766
Q ss_pred eeccce
Q 022698 261 RVTAFM 266 (293)
Q Consensus 261 ~~~~~~ 266 (293)
++..|.
T Consensus 437 ~VPTFG 442 (508)
T COG4262 437 HVPTFG 442 (508)
T ss_pred ecCccc
Confidence 666553
No 248
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.98 E-value=2.2e-05 Score=65.11 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=71.8
Q ss_pred ccccCccchHHHHHHHHHhcCC----CC-CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q 022698 91 FFYSAVPLHYDMAQRMVGSVND----WS-TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM 165 (293)
Q Consensus 91 f~~~~~~~~~~~~~~l~~~~~~----~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~ 165 (293)
|.-...+...+....+.+.+.. +. +..++||||+|.-++= ..+..+.++.+.+|.|+++.+++.|+.+...
T Consensus 49 ~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIY----PliG~~eYgwrfvGseid~~sl~sA~~ii~~ 124 (292)
T COG3129 49 FLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIY----PLIGVHEYGWRFVGSEIDSQSLSSAKAIISA 124 (292)
T ss_pred CcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccc----ccccceeecceeecCccCHHHHHHHHHHHHc
Confidence 3333444455555555555432 22 4568999999987763 2222333468999999999999999999888
Q ss_pred c-CCCCceEEEEcCCCCCCC-----CCCcccEEEecchhhhhc
Q 022698 166 E-GVQEYVTAREGDVRSLPF-----GDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 166 ~-~~~~~v~~~~~d~~~~~~-----~~~~fD~Iv~~~~~~~~~ 202 (293)
| ++...++.+...-..--+ ..+.||.+.||||+|...
T Consensus 125 N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 125 NPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred CcchhhheeEEeccCccccccccccccceeeeEecCCCcchhH
Confidence 7 666667766543322112 246899999999998654
No 249
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.96 E-value=0.00012 Score=60.27 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--CCCCcccE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--FGDNYFDV 191 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~ 191 (293)
.++.+||++|-|-|.+...+-+.-| .+-+-++..|+.++..+.+.-.. ..+|..+.+-+++.. ++++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-----~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-----DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-----cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcce
Confidence 4678999999999998877655433 47789999999888887764332 245777777776632 56788999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|.-...-.+.. +...+.+.+.++|||+|.+-+.+-..
T Consensus 173 I~yDTy~e~yE------------dl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 173 IYYDTYSELYE------------DLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred eEeechhhHHH------------HHHHHHHHHhhhcCCCceEEEecCcc
Confidence 99754333333 77888999999999999998766443
No 250
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=0.00052 Score=55.99 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 97 PLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+....++..++.-+. ++.++.+||-+|+.+|+...+++.-.+ ...+++++.|+......-.-++.. +|+--
T Consensus 56 p~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~----~G~iYaVEfs~R~~reLl~~a~~R---~Ni~P 128 (231)
T COG1889 56 PRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG----EGRIYAVEFSPRPMRELLDVAEKR---PNIIP 128 (231)
T ss_pred cchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC----CCcEEEEEecchhHHHHHHHHHhC---CCcee
Confidence 445567776665543 357889999999999999999987765 358999999999877666665543 45777
Q ss_pred EEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE------EcCCCch---
Q 022698 175 REGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV------WDLLHVP--- 242 (293)
Q Consensus 175 ~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~------~~~~~~~--- 242 (293)
+..|+.... .--++.|+|.+.-. + ++...-+..++...||+||.+++ ++....+
T Consensus 129 IL~DA~~P~~Y~~~Ve~VDviy~DVA----Q----------p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v 194 (231)
T COG1889 129 ILEDARKPEKYRHLVEKVDVIYQDVA----Q----------PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV 194 (231)
T ss_pred eecccCCcHHhhhhcccccEEEEecC----C----------chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH
Confidence 788887621 11246899987521 1 11334567788899999997665 3333332
Q ss_pred --HHHHHHHHcCCcceEEeeeeccce
Q 022698 243 --EYVRRLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 243 --~~~~~l~~~gf~~~~~~~~~~~~~ 266 (293)
+-.+.|++.+|+.++.. ++..|.
T Consensus 195 f~~ev~kL~~~~f~i~e~~-~LePye 219 (231)
T COG1889 195 FKDEVEKLEEGGFEILEVV-DLEPYE 219 (231)
T ss_pred HHHHHHHHHhcCceeeEEe-ccCCcc
Confidence 34566778888877655 445543
No 251
>PRK10742 putative methyltransferase; Provisional
Probab=97.92 E-value=0.00017 Score=61.27 Aligned_cols=79 Identities=16% Similarity=-0.014 Sum_probs=63.8
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc------C--CCCceEEEEcCCCCCC-CCCCc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME------G--VQEYVTAREGDVRSLP-FGDNY 188 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~------~--~~~~v~~~~~d~~~~~-~~~~~ 188 (293)
+|||+-+|+|..+..++.. +++|+++|.|+.+....+++++.. + +..+++++..|..++- -...+
T Consensus 91 ~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~ 164 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPR 164 (250)
T ss_pred EEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCC
Confidence 8999999999999999876 578999999999999999888874 2 2256889999986642 12347
Q ss_pred ccEEEecchhhhhc
Q 022698 189 FDVVVSAAFFHTVG 202 (293)
Q Consensus 189 fD~Iv~~~~~~~~~ 202 (293)
||+|...|+|.+-.
T Consensus 165 fDVVYlDPMfp~~~ 178 (250)
T PRK10742 165 PQVVYLDPMFPHKQ 178 (250)
T ss_pred CcEEEECCCCCCCc
Confidence 99999999987643
No 252
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.91 E-value=4.5e-05 Score=59.66 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=49.9
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+++|+|||.|..+..+++..+ ..+++++|+++.+.+.++++.+.++.. ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999998887654 458999999999999999999988764 48888777654
No 253
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=0.00051 Score=59.56 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
.+...+++.+. ..+++..+|.--|.|..+..++..++.. ++++|+|.++.+++.|++.....+ +++.+++.++.
T Consensus 10 VLl~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~---~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~ 83 (314)
T COG0275 10 VLLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDL---GRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA 83 (314)
T ss_pred hHHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCC---CeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence 35566777665 4677899999999999999999998753 589999999999999999987765 67999998876
Q ss_pred CCC-----CCCCcccEEEec
Q 022698 181 SLP-----FGDNYFDVVVSA 195 (293)
Q Consensus 181 ~~~-----~~~~~fD~Iv~~ 195 (293)
++. ...+++|-|+..
T Consensus 84 ~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 84 NLAEALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHHHHhcCCCceeEEEEe
Confidence 643 123466766643
No 254
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.85 E-value=5.7e-05 Score=68.71 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=87.6
Q ss_pred cccccCccchHHHHHHHH---HhcCC-CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q 022698 90 NFFYSAVPLHYDMAQRMV---GSVND-WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM 165 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~---~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~ 165 (293)
-||......+.++.-.++ ..... .....+|||.=+|+|.=++..+.+++. ..+|++-|+|+++++..++|++.
T Consensus 20 vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~---~~~v~~NDi~~~a~~~i~~N~~~ 96 (377)
T PF02005_consen 20 VFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAG---VDKVTANDISPEAVELIKRNLEL 96 (377)
T ss_dssp SS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SS---ECEEEEEES-HHHHHHHHHHHHH
T ss_pred cccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCC---CCEEEEecCCHHHHHHHHHhHhh
Confidence 355555556666655552 22211 123468999999999999999988653 35999999999999999999999
Q ss_pred cCCCC-ceEEEEcCCCCCC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 166 EGVQE-YVTAREGDVRSLP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 166 ~~~~~-~v~~~~~d~~~~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
|++.+ ++++...|+..+- .....||+|=..|.= .+..++..+.+.++.||.|++.
T Consensus 97 N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPfG----------------Sp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 97 NGLEDERIEVSNMDANVLLYSRQERFDVIDLDPFG----------------SPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp CT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--SS------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ccccCceEEEehhhHHHHhhhccccCCEEEeCCCC----------------CccHhHHHHHHHhhcCCEEEEe
Confidence 99987 7889998987642 246789999875432 5667899999999999999984
No 255
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.80 E-value=0.00017 Score=63.44 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=72.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
-+.+.+++.+. ..++..++|.=+|.|..+..+++.++ .++|+|+|.++.+++.+++++... .+++.+++.+..
T Consensus 7 Vll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~----~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~ 79 (305)
T TIGR00006 7 VLLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLG----TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFA 79 (305)
T ss_pred hhHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHH
Confidence 35666777764 45677999999999999999998875 259999999999999999987654 357999999987
Q ss_pred CCC-----CCCCcccEEEecchhhh
Q 022698 181 SLP-----FGDNYFDVVVSAAFFHT 200 (293)
Q Consensus 181 ~~~-----~~~~~fD~Iv~~~~~~~ 200 (293)
++. ....++|.|+.+..+..
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDLGVSS 104 (305)
T ss_pred HHHHHHHhcCCCcccEEEEeccCCH
Confidence 653 12357999998755533
No 256
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=0.00047 Score=55.85 Aligned_cols=141 Identities=21% Similarity=0.181 Sum_probs=89.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHH----HHHHHHHH-HhcCCCCceEEEEcCCCCCCCCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRT----TLSTLRTA-KMEGVQEYVTAREGDVRSLPFGDN 187 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~----l~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~ 187 (293)
+.++.+|+|+-.|.|.++..++...... ..|+++=..+.. .+..+.+. .+.....+++.+-.+...+. +.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~---G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPK---GKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCc---eeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCC
Confidence 5788999999999999999998887654 377776544431 11111111 11111123455555554444 456
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC----------------chHHHHHHHHc
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH----------------VPEYVRRLQEL 251 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------~~~~~~~l~~~ 251 (293)
..|++..+..+|.+....-+ ......+...+++.|||||.+.+.++.- ...+.+..+++
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~-----~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaa 196 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIH-----PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAA 196 (238)
T ss_pred cccccccchhhhhhhccccC-----cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhh
Confidence 68888887777665432222 2255678999999999999999976531 23477778899
Q ss_pred CCcceEEeeee
Q 022698 252 KMEDIRVSERV 262 (293)
Q Consensus 252 gf~~~~~~~~~ 262 (293)
||+..-..+-+
T Consensus 197 GFkl~aeS~il 207 (238)
T COG4798 197 GFKLEAESEIL 207 (238)
T ss_pred cceeeeeehhh
Confidence 99865444333
No 257
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.0006 Score=59.25 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc------------------------
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY------------------------ 171 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~------------------------ 171 (293)
..+||--|||.|.++..++.... ...|-+.|.-|+-...=.+..-...+.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~------~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~ 224 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF------KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPIS 224 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc------cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccccccc
Confidence 45899999999999999987633 566668887776533322210000010
Q ss_pred ---------------eEEEEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEE
Q 022698 172 ---------------VTAREGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233 (293)
Q Consensus 172 ---------------v~~~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 233 (293)
.+...+|+.+.- ...+.||+|+.+..+.... +..++++.+..+|||||++
T Consensus 225 ~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~------------NileYi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 225 IPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH------------NILEYIDTIYKILKPGGVW 292 (369)
T ss_pred CccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH------------HHHHHHHHHHHhccCCcEE
Confidence 111223332210 1124699999886665554 8889999999999999998
Q ss_pred EEEcC------------------CCchHHHHHHHHcCCcceEEee
Q 022698 234 VVWDL------------------LHVPEYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 234 ~~~~~------------------~~~~~~~~~l~~~gf~~~~~~~ 260 (293)
+=.++ ...+++..++...||+.++-+.
T Consensus 293 iNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 293 INLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred EeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEeee
Confidence 75322 1245788888999999877653
No 258
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00097 Score=59.34 Aligned_cols=152 Identities=21% Similarity=0.166 Sum_probs=93.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-------- 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-------- 183 (293)
.+.++.+|||+++..|.-+..+++.+-+......+++-|.++.-+............ .+..+...|+...|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCc
Confidence 467899999999999999999988764321123899999999988888777654432 33444444443332
Q ss_pred -CCCCcccEEEecchhhhhc---ccc-----Ccchhh---hHHHHHHHHHHHHHcccCCcEEEEEcCCCc----hH-HHH
Q 022698 184 -FGDNYFDVVVSAAFFHTVG---KEY-----GHRTVE---AAAERMRVLGEMVRVLKPGGVGVVWDLLHV----PE-YVR 246 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~---~~~-----~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~-~~~ 246 (293)
.....||-|.|.-|...-. ..+ ++.... -..-...++.+..++||+||.++.+++... +. +.+
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~ 310 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQE 310 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHH
Confidence 1224699999975542211 000 000000 001234688888999999999999776543 33 344
Q ss_pred HHHHcC--CcceEEeeeecc
Q 022698 247 RLQELK--MEDIRVSERVTA 264 (293)
Q Consensus 247 ~l~~~g--f~~~~~~~~~~~ 264 (293)
+|++.| ++.+.+..++.+
T Consensus 311 ~L~~~~~~~~lv~~~~~lp~ 330 (375)
T KOG2198|consen 311 ALQKVGGAVELVDVSGDLPG 330 (375)
T ss_pred HHHHhcCcccceeecccccc
Confidence 454444 455555555554
No 259
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=6.6e-05 Score=58.87 Aligned_cols=140 Identities=11% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHH-HHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC--CceEEEE
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAV-ATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ--EYVTARE 176 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l-~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~--~~v~~~~ 176 (293)
+.++-.+++.... ..+.+|||+|.|--+++-.+ +...+ ...|..+|-++.+++-.++....+..+ .++....
T Consensus 15 eala~~~l~~~n~-~rg~~ilelgggft~laglmia~~a~----~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlr 89 (201)
T KOG3201|consen 15 EALAWTILRDPNK-IRGRRILELGGGFTGLAGLMIACKAP----DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLR 89 (201)
T ss_pred HHHHHHHHhchhH-HhHHHHHHhcCchhhhhhhheeeecC----CceEEEecCCHHHHHHHHHHHhcccccccceehhhH
Confidence 3444445544332 34578999999975544333 33333 469999999999999888776655322 2233333
Q ss_pred cCCCCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCc---hHHHHHHHHc
Q 022698 177 GDVRSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHV---PEYVRRLQEL 251 (293)
Q Consensus 177 ~d~~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~l~~~ 251 (293)
.+..... ....+||+|+|...+..-. ....+.+.++++|+|.|.-++..+... +.+.......
T Consensus 90 w~~~~aqsq~eq~tFDiIlaADClFfdE------------~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~ 157 (201)
T KOG3201|consen 90 WLIWGAQSQQEQHTFDIILAADCLFFDE------------HHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTV 157 (201)
T ss_pred HHHhhhHHHHhhCcccEEEeccchhHHH------------HHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhc
Confidence 3332211 2245899999987765533 567888999999999999777666544 3456666778
Q ss_pred CCcce
Q 022698 252 KMEDI 256 (293)
Q Consensus 252 gf~~~ 256 (293)
||...
T Consensus 158 gf~v~ 162 (201)
T KOG3201|consen 158 GFTVC 162 (201)
T ss_pred eeEEE
Confidence 88754
No 260
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.70 E-value=0.00018 Score=63.73 Aligned_cols=88 Identities=17% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
..++.++||+||++|.++..+++. +.+|++||..+- + ..+.. .++|.....|......+.+.+|.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l----~-~~L~~---~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPM----A-QSLMD---TGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhc----C-HhhhC---CCCEEEEeccCcccCCCCCCCCEE
Confidence 357789999999999999888876 469999996552 1 12222 256888888887653236789999
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG 230 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 230 (293)
+|.-.- .|.++.+-+.+.|..|
T Consensus 275 VcDmve----------------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE----------------KPARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc----------------CHHHHHHHHHHHHhcC
Confidence 997542 4456666677777665
No 261
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.68 E-value=0.00014 Score=63.87 Aligned_cols=121 Identities=21% Similarity=0.174 Sum_probs=84.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-------HHHHHHHhcCCCC-ceEEEEcCCCCCC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-------STLRTAKMEGVQE-YVTAREGDVRSLP 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-------~a~~~~~~~~~~~-~v~~~~~d~~~~~ 183 (293)
...+++-|.|--.|||.+....+.. ++-|.|.||+-.++. -.+.|+++.|..+ -+.++.+|..+-+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~ 278 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP 278 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc
Confidence 3567889999999999998887765 579999999998877 2456777777443 3577888888765
Q ss_pred CC-CCcccEEEecchhhhhccc---------------------cCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 184 FG-DNYFDVVVSAAFFHTVGKE---------------------YGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 184 ~~-~~~fD~Iv~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+. .-.||.|||.|||..-..- +.+....-..-....+.-.++.|..||+++++-.
T Consensus 279 ~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 43 4579999999998543200 0111111111223466667799999999998543
No 262
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.64 E-value=0.00015 Score=63.70 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
+.+.+++.+. ..++..++|.--|.|..+..+++.++ +++++|+|.++.+++.+++++... .+++.++..++.+
T Consensus 8 ll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~----~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP----NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T----T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG
T ss_pred cHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC----CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH
Confidence 4555666664 46778999999999999999999887 469999999999999998876644 4679999999876
Q ss_pred CC-----C-CCCcccEEEecch
Q 022698 182 LP-----F-GDNYFDVVVSAAF 197 (293)
Q Consensus 182 ~~-----~-~~~~fD~Iv~~~~ 197 (293)
+. . ...++|-|+....
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S
T ss_pred HHHHHHHccCCCccCEEEEccc
Confidence 53 2 2347888886533
No 263
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00054 Score=57.44 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEcCCCCCCC--CCCccc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREGDVRSLPF--GDNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~~~~--~~~~fD 190 (293)
.++..+||+|+.||.++-.+++.- ...|+|+|.....+..--++ .++ +.+...|++.+.. -.+..|
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-----Ak~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-----AKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-----CcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHHHcccCCC
Confidence 467899999999999999988763 25999999988755433332 233 4555667766531 123689
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+++|.-.+..+ ..++..+..+++|+|.++.
T Consensus 147 ~~v~DvSFISL---------------~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 147 LIVIDVSFISL---------------KLILPALLLLLKDGGDLVL 176 (245)
T ss_pred eEEEEeehhhH---------------HHHHHHHHHhcCCCceEEE
Confidence 99998777654 4788889999999997765
No 264
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00046 Score=63.53 Aligned_cols=112 Identities=22% Similarity=0.310 Sum_probs=82.9
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecch
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAF 197 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 197 (293)
++|-+|||.-.+...+-+.. ...|+.+|+|+.+++.+....... .+-..+...|+..+.+++.+||+|+.-+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-----~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-----FEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-----CCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCc
Confidence 89999999998776554432 368999999999998777554321 23478999999999999999999999888
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++++-......... ......+.+++++|+|||+.+.+..
T Consensus 124 lDal~~de~a~~~~--~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 124 LDALFEDEDALLNT--AHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccccCCchhhhhh--HHhhHHHhhHHHHhccCCEEEEEEe
Confidence 87665322211111 2445678999999999999776544
No 265
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.56 E-value=0.0016 Score=56.01 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCC--hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRG--ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G--~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
...+.++.+.....-..+||||||-- .....+++... +.++|+-+|++|-.+..++..+..+.- .+..++++|+
T Consensus 55 Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~---P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~ 130 (267)
T PF04672_consen 55 FLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVA---PDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH----TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--T
T ss_pred HHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhC---CCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCC
Confidence 44445555443223446999999963 23444555443 368999999999999988888776532 3489999999
Q ss_pred CCCC--C---------CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 180 RSLP--F---------GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 180 ~~~~--~---------~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.+.. + .-.+.=.|+.+.++|++++ .+++..+++.+...|.||..|.++..
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D---------~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPD---------DDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-C---------GCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCC---------ccCHHHHHHHHHHhCCCCceEEEEec
Confidence 8732 1 1122235666788888873 23788999999999999999999543
No 266
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.53 E-value=0.0016 Score=52.49 Aligned_cols=124 Identities=27% Similarity=0.342 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCCCC--------
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRSLP-------- 183 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~~-------- 183 (293)
++|+.+|||+||..|..+....+... +...|.|+|+-.- ..-.| +.++++ |+.+..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~---p~g~v~gVDllh~--------~p~~G----a~~i~~~dvtdp~~~~ki~e~ 131 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVN---PNGMVLGVDLLHI--------EPPEG----ATIIQGNDVTDPETYRKIFEA 131 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhC---CCceEEEEeeeec--------cCCCC----cccccccccCCHHHHHHHHHh
Confidence 46789999999999999987766653 3569999998432 11112 344444 665421
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHH-------HHHHHHHcccCCcEEEE--EcCCCchHHHHHHHHcCCc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMR-------VLGEMVRVLKPGGVGVV--WDLLHVPEYVRRLQELKME 254 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~l~~~gf~ 254 (293)
+++.+.|+|+|...-.... .. ..|... ++.-....++|+|.+++ ++-...+.+.+.|.+. |+
T Consensus 132 lp~r~VdvVlSDMapnaTG----vr----~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~-f~ 202 (232)
T KOG4589|consen 132 LPNRPVDVVLSDMAPNATG----VR----IRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAV-FT 202 (232)
T ss_pred CCCCcccEEEeccCCCCcC----cc----hhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHH-hh
Confidence 3567899999863322111 00 112222 23333467899999987 5555556677777555 77
Q ss_pred ceEEee
Q 022698 255 DIRVSE 260 (293)
Q Consensus 255 ~~~~~~ 260 (293)
.++..+
T Consensus 203 ~Vk~vK 208 (232)
T KOG4589|consen 203 NVKKVK 208 (232)
T ss_pred hcEeeC
Confidence 777654
No 267
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0032 Score=48.83 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC
Q 022698 99 HYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD 178 (293)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d 178 (293)
..+..+.++..+.. ++..+.+|+|+|.|.+....++... ...+|+|+++-.+..++-.+-+.+..++..|...|
T Consensus 57 tteQv~nVLSll~~-n~~GklvDlGSGDGRiVlaaar~g~-----~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkd 130 (199)
T KOG4058|consen 57 TTEQVENVLSLLRG-NPKGKLVDLGSGDGRIVLAAARCGL-----RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKD 130 (199)
T ss_pred cHHHHHHHHHHccC-CCCCcEEeccCCCceeehhhhhhCC-----CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhh
Confidence 34556667777653 5667899999999999988877631 36799999999999888888888888889999999
Q ss_pred CCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 179 VRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 179 ~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.+..+.+ +..++....-..++ .+-.++..-+..|..++-.-+
T Consensus 131 lwK~dl~d--y~~vviFgaes~m~---------------dLe~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 131 LWKVDLRD--YRNVVIFGAESVMP---------------DLEDKLRTELPANTRVVACRF 173 (199)
T ss_pred hhhccccc--cceEEEeehHHHHh---------------hhHHHHHhhCcCCCeEEEEec
Confidence 98866544 44444333322232 233445556667777665443
No 268
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.00075 Score=62.48 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=85.8
Q ss_pred HHHHHHHhcCCCCC--CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 102 MAQRMVGSVNDWST--VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 102 ~~~~l~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
+...++++..+-.. ...|+=+|+|.|-+..+..+.........+++++|-+|+|+-..+. .+...+.++|.++..|+
T Consensus 352 i~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 352 ILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDM 430 (649)
T ss_pred HHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccc
Confidence 33444454433222 4468899999999988877665544445799999999999987775 45556678899999999
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+.++.+..+.|++|+-. +..+.+. +--.+.|.-+.+.|||+|+.+=
T Consensus 431 R~w~ap~eq~DI~VSEL-LGSFGDN---------ELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 431 RKWNAPREQADIIVSEL-LGSFGDN---------ELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred cccCCchhhccchHHHh-hccccCc---------cCCHHHHHHHHhhcCCCceEcc
Confidence 99874457899999742 2222210 0113677788899999998774
No 269
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.35 E-value=0.00045 Score=63.88 Aligned_cols=134 Identities=19% Similarity=0.221 Sum_probs=80.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH----HHHHHHHHHHhcCCCCceEEEEcCCCC-CCCCCCcccE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR----TTLSTLRTAKMEGVQEYVTAREGDVRS-LPFGDNYFDV 191 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~----~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~ 191 (293)
..|+|+.+|.|.++++|... .|+....-+. .+.. .-..|+-+ .-.|+.+ ++.=..+||+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~v----IydRGLIG----~yhDWCE~fsTYPRTYDL 430 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPV----IYDRGLIG----VYHDWCEAFSTYPRTYDL 430 (506)
T ss_pred eeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchh----hhhcccch----hccchhhccCCCCcchhh
Confidence 46999999999999888643 3455544433 1111 11223311 1234443 2222478999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chHHHHHHHHcCCcceEEeeeeccceecce
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPEYVRRLQELKMEDIRVSERVTAFMVSSH 270 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~ 270 (293)
|.++..+.... ..-+...++-++-|+|+|||.+++-|... ..++..++.+..++. ++.....+-....+
T Consensus 431 lHA~~lfs~~~---------~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~-~~~d~e~g~~~~Ek 500 (506)
T PF03141_consen 431 LHADGLFSLYK---------DRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEV-RIHDTEDGPDGPEK 500 (506)
T ss_pred eehhhhhhhhc---------ccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceE-EEEecCCCCCCCce
Confidence 99998886654 12356788999999999999999966433 345666666777663 34443333222334
Q ss_pred eeeeec
Q 022698 271 IVSFRK 276 (293)
Q Consensus 271 ~~~~~~ 276 (293)
++.++|
T Consensus 501 iL~~~K 506 (506)
T PF03141_consen 501 ILICQK 506 (506)
T ss_pred EEEEEC
Confidence 555543
No 270
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.32 E-value=0.002 Score=53.35 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=57.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----C----CCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----F----GDN 187 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~----~~~ 187 (293)
+..|+|+|.-.|.-++.++..+...+..++|+++|++.... .++..+...+.++++++++|..+.. . ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 46899999999999999988776655568999999954322 1222333344578999999987642 1 112
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
...+|+... -|... +....|+....++++|+.+++
T Consensus 111 ~~vlVilDs-~H~~~------------hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 111 HPVLVILDS-SHTHE------------HVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp SSEEEEESS-----S------------SHHHHHHHHHHT--TT-EEEE
T ss_pred CceEEEECC-CccHH------------HHHHHHHHhCccCCCCCEEEE
Confidence 334555321 11111 445667778899999999988
No 271
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0014 Score=58.45 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=90.5
Q ss_pred cccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCC
Q 022698 90 NFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQ 169 (293)
Q Consensus 90 ~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~ 169 (293)
-||......+.++.-.++....... ..+|+|.-+|+|.=++..+.+.+ ..+++.-|+||.+.+.+++|++.|...
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~~~-~~~v~DalsatGiRgIRya~E~~----~~~v~lNDisp~Avelik~Nv~~N~~~ 102 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGKLL-PKRVLDALSATGIRGIRYAVETG----VVKVVLNDISPKAVELIKENVRLNSGE 102 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhccC-CeEEeecccccchhHhhhhhhcC----ccEEEEccCCHHHHHHHHHHHHhcCcc
Confidence 3555555666666666666554322 56899999999999998888765 238999999999999999999998432
Q ss_pred CceEEEEcCCCCCCC-CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 170 EYVTAREGDVRSLPF-GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 170 ~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+ ...+..|+..+-. ....||+|=..|.= .|.-++..+.+..+.||.+.+.
T Consensus 103 ~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG----------------SPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 103 D-AEVINKDANALLHELHRAFDVIDIDPFG----------------SPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred c-ceeecchHHHHHHhcCCCccEEecCCCC----------------CCchHHHHHHHHhhcCCEEEEE
Confidence 2 4555577655321 13679988765432 3455778888889999999883
No 272
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0016 Score=57.43 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC----CCCCCCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR----SLPFGDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~~~~fD 190 (293)
.+.+|||+|.|.|.-..++-..+|.. ..++.++.|+..-+..... ..+-...+......|+. .+|. ...|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl---~sa~ile~sp~lrkV~~tl-~~nv~t~~td~r~s~vt~dRl~lp~-ad~yt 187 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDL---KSAVILEASPALRKVGDTL-AENVSTEKTDWRASDVTEDRLSLPA-ADLYT 187 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCc---hhhhhhccCHHHHHHHHHH-HhhcccccCCCCCCccchhccCCCc-cceee
Confidence 35679999999999887777777653 3677788888644433332 22211111222233332 2221 23466
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHH
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQE 250 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~ 250 (293)
+++...=+-+.. . .......++.++.++.|||.|++++..+...+..++++
T Consensus 188 l~i~~~eLl~d~---~------ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rA 238 (484)
T COG5459 188 LAIVLDELLPDG---N------EKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRA 238 (484)
T ss_pred hhhhhhhhcccc---C------cchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHH
Confidence 655432222111 1 11334488999999999999999998877665555443
No 273
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.12 E-value=0.0016 Score=53.23 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=67.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC------CCCceEEEEcCCCCC-C--CCCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG------VQEYVTAREGDVRSL-P--FGDN 187 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~------~~~~v~~~~~d~~~~-~--~~~~ 187 (293)
-.+.|||||-|.+...|+..+| ..-+.|.+|--..-+..+++..... ...++.+...+.... | +..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP----dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kg 137 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP----DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKG 137 (249)
T ss_pred ceEEeeccCccchhhhccccCc----cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhc
Confidence 4699999999999999999888 4589999988776666555544332 234566776666543 2 2233
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+.+-.+...|=-|... ......-....++.+..-+|++||.++.+.
T Consensus 138 qLskmff~fpdpHfk~----~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKA----RKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhh----hhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 3333332222111110 000000011246777888999999998854
No 274
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.12 E-value=0.0034 Score=53.29 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+|+|||||.=-++..+....+ +..++|+||+..+++...+.....++. ..+...|....+ +....|+..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~----~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-~~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAP----GATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-PKEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSST----T-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-TTSEESEEE
T ss_pred CCCchhhhhhccCCceehhhcccCC----CcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-CCCCcchhh
Confidence 4467999999999888776664433 579999999999999999999988865 566677887643 456789999
Q ss_pred ecchhhhhc
Q 022698 194 SAAFFHTVG 202 (293)
Q Consensus 194 ~~~~~~~~~ 202 (293)
..-.++.+.
T Consensus 177 llK~lp~le 185 (251)
T PF07091_consen 177 LLKTLPCLE 185 (251)
T ss_dssp EET-HHHHH
T ss_pred HHHHHHHHH
Confidence 876666554
No 275
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.03 E-value=0.01 Score=51.96 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=77.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC--CCcccEEEec
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG--DNYFDVVVSA 195 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~Iv~~ 195 (293)
+++|+.||.|.....+.+. | ...+.++|+++.+++..++|.... +...|+.++... .+.+|+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~----G-~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA----G-FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc----C-CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeC
Confidence 6999999999998777644 1 246889999999998888875321 456777765422 3579999999
Q ss_pred chhhhhccccCcchhhh-HHHHHHHHHHHHHcccCCcEEEEEcCC---------CchHHHHHHHHcCCcceEEe
Q 022698 196 AFFHTVGKEYGHRTVEA-AAERMRVLGEMVRVLKPGGVGVVWDLL---------HVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~l~~~gf~~~~~~ 259 (293)
+|......--...+..+ ......-+-++.+.++|. ++++=+.. ....+.+.|++.||......
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~ 142 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKL 142 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEE
Confidence 98765542111111111 111222223344456775 33331211 12357777888998754443
No 276
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0029 Score=57.42 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=56.1
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEEEe
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVVVS 194 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~ 194 (293)
..|||||+|||-++....+... -.+++++.-..|.+.|++....+|+.+++.++.-.-.+... +..+.|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvraga-----D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-----DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-----CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 3699999999999877766642 37999999999999999999999999999888665444321 1233566654
No 277
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.032 Score=47.17 Aligned_cols=112 Identities=19% Similarity=0.166 Sum_probs=76.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CC-CCCCccc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LP-FGDNYFD 190 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~fD 190 (293)
......++|+|+|+..-+..|...+..++...+++.+|+|...++...+.....-..-.+.-+++|... +. .+.+. .
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~-~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGG-R 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCC-e
Confidence 445678999999999999999999987776789999999999887544443332212225556666543 11 22222 2
Q ss_pred EEEe--cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 191 VVVS--AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 191 ~Iv~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
-+++ ...+..+. +.+-..++.++...|+||-.+++
T Consensus 155 Rl~~flGStlGN~t----------p~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 155 RLFVFLGSTLGNLT----------PGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEEEEecccccCCC----------hHHHHHHHHHHHhcCCCcceEEE
Confidence 2222 33344444 23667899999999999998887
No 278
>PRK13699 putative methylase; Provisional
Probab=96.96 E-value=0.0028 Score=53.77 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=55.4
Q ss_pred EEEEcCCCCC--CCCCCcccEEEecchhhhh-ccccCc--chhhhHHHHHHHHHHHHHcccCCcEEEEE-cCCCchHHHH
Q 022698 173 TAREGDVRSL--PFGDNYFDVVVSAAFFHTV-GKEYGH--RTVEAAAERMRVLGEMVRVLKPGGVGVVW-DLLHVPEYVR 246 (293)
Q Consensus 173 ~~~~~d~~~~--~~~~~~fD~Iv~~~~~~~~-~~~~~~--~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~ 246 (293)
++.++|..+. .++++++|+|+..|||..- ....+. ......+-....+.+++|+|||||.+++. +......+..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~ 82 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMA 82 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHH
Confidence 5667777653 3678999999999999631 100010 00111112357889999999999988763 3333566777
Q ss_pred HHHHcCCcceE
Q 022698 247 RLQELKMEDIR 257 (293)
Q Consensus 247 ~l~~~gf~~~~ 257 (293)
.+++.||....
T Consensus 83 al~~~GF~l~~ 93 (227)
T PRK13699 83 AWKNAGFSVVG 93 (227)
T ss_pred HHHHCCCEEee
Confidence 88999998554
No 279
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.96 E-value=0.014 Score=49.77 Aligned_cols=108 Identities=15% Similarity=0.070 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH-----HhcCCCCceEEEEcCCCCCC---CCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA-----KMEGVQEYVTAREGDVRSLP---FGD 186 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~-----~~~~~~~~v~~~~~d~~~~~---~~~ 186 (293)
...+|||+|+|+|-.++.++... +++|+..|+.. .+.....|. ..++....+.+...++...+ +..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~ 159 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-----GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL 159 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-----cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc
Confidence 34579999999997777666544 46899999744 344344332 22233335666666665532 112
Q ss_pred Cc-ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 187 NY-FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 187 ~~-fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
+. ||+|++..+++... .+..++.-++..|..+|.+++.....
T Consensus 160 ~~~~DlilasDvvy~~~------------~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 160 PNPFDLILASDVVYEEE------------SFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred CCcccEEEEeeeeecCC------------cchhHHHHHHHHHhcCCeEEEEEecc
Confidence 33 99999998887665 66778888888899999666544433
No 280
>PRK11524 putative methyltransferase; Provisional
Probab=96.92 E-value=0.0035 Score=55.13 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=54.0
Q ss_pred eEEEEcCCCCC--CCCCCcccEEEecchhhhhcc----ccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHH
Q 022698 172 VTAREGDVRSL--PFGDNYFDVVVSAAFFHTVGK----EYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYV 245 (293)
Q Consensus 172 v~~~~~d~~~~--~~~~~~fD~Iv~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 245 (293)
..++++|..+. .+++++||+|+++|||..... ...........-....+.++.++|||||.+++......-...
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~ 88 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMPFI 88 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhhHH
Confidence 46788888763 255789999999999863110 001111111122357889999999999999885443333345
Q ss_pred HHHHHcCCcceE
Q 022698 246 RRLQELKMEDIR 257 (293)
Q Consensus 246 ~~l~~~gf~~~~ 257 (293)
..+.+.||....
T Consensus 89 ~~~~~~~f~~~~ 100 (284)
T PRK11524 89 DLYCRKLFTIKS 100 (284)
T ss_pred HHHHhcCcceEE
Confidence 566677876444
No 281
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.0053 Score=51.16 Aligned_cols=108 Identities=27% Similarity=0.301 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhh--cCCC---cEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKK--TGSL---GRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------ 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~--~~~~---~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------ 183 (293)
.-.|++|+++..|.++..|.+++-+ .+.+ .+++++|+.+- +.. +.|--+++|+....
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI----~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------API----EGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------Ccc----CceEEeecccCCHhHHHHHH
Confidence 3468999999999999999988754 2212 24999999764 122 23677889987642
Q ss_pred --CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 184 --FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 184 --~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+...+.|+|||...-.... ....+.+...+-....+.-...+|+|||.++-
T Consensus 109 ~hfggekAdlVvcDGAPDvTG-lHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTG-LHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHhCCCCccEEEeCCCCCccc-cccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 3456899999975432111 00111222222233455556689999999875
No 282
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.64 E-value=0.042 Score=44.18 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=77.4
Q ss_pred EcCCCChHHHHHHHHhhhcCCCcEEEEEe--CCHHHHH---HHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEE
Q 022698 122 IGCGRGILLNAVATQFKKTGSLGRVVGLD--CKKRTTL---STLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVV 192 (293)
Q Consensus 122 iG~G~G~~~~~l~~~~~~~~~~~~v~~vD--is~~~l~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~I 192 (293)
+|=|.=.++.+|++.+.. +..++++- -.++..+ .+..|.....-.+-.-....|+.++. ...++||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 566777777778877653 23555554 3333322 23344433311111223456666654 245789999
Q ss_pred EecchhhhhccccCcchh-hhHHHHHHHHHHHHHcccCCcEEEEEcCCCch----HHHHHHHHcCCcceEEee
Q 022698 193 VSAAFFHTVGKEYGHRTV-EAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP----EYVRRLQELKMEDIRVSE 260 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----~~~~~l~~~gf~~~~~~~ 260 (293)
+-|.|-.....+.+.... ....=...+++.+..+|+++|.+.+.-....+ .+.++-++.||..++...
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~ 152 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVP 152 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEec
Confidence 999775431111111111 11122346889999999999999885544433 466777788988776643
No 283
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0048 Score=53.35 Aligned_cols=111 Identities=21% Similarity=0.200 Sum_probs=79.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc--CC-CCceEEEEcCCCCCC--CCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME--GV-QEYVTAREGDVRSLP--FGDN 187 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~--~~-~~~v~~~~~d~~~~~--~~~~ 187 (293)
+...+++|=||.|.|...+..+++ +. -.++.-+|+....++..++..... +. .+++...-+|...+- ...+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~---ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~ 194 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KS---VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN 194 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-cc---ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC
Confidence 345678999999999998888776 43 248999999999999888876543 22 257888889876532 2367
Q ss_pred cccEEEec--chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 188 YFDVVVSA--AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 188 ~fD~Iv~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+||+|+.. .|..... ..-...++..+.+.||+||+++...
T Consensus 195 ~~dVii~dssdpvgpa~----------~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGPAC----------ALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred CceEEEEecCCccchHH----------HHHHHHHHHHHHHhhCCCcEEEEec
Confidence 89999963 2222111 1123467888889999999998854
No 284
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0013 Score=60.53 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNY 188 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~ 188 (293)
..++.+|||.=+++|.-++..+.+++.. .++++.|.++.++...++|.+.++..+.++....|+..+- -....
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v---~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGV---RQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcch---hhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccc
Confidence 3456789999999999999999998853 5899999999999999999999988888888888876532 22467
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
||+|=..|. . .+..+|..+.+.++.||.|++.
T Consensus 184 FDvIDLDPy-G---------------s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 184 FDVIDLDPY-G---------------SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred cceEecCCC-C---------------CccHHHHHHHHHhhcCCEEEEE
Confidence 999986532 1 4457888899999999999983
No 285
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.53 E-value=0.0093 Score=51.44 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCC----CcEEEEEeCCHHHHHHHHHHHHhc-----CCCCceEEEEcCCCCCCCCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGS----LGRVVGLDCKKRTTLSTLRTAKME-----GVQEYVTAREGDVRSLPFGD 186 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~----~~~v~~vDis~~~l~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~ 186 (293)
+.+|+|+|+|+|.++..++..+.+..+ ..+++.+|+|+.+.+..++++... ....++.+ ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 468999999999999999998764322 359999999999887777776542 12234555 23333322
Q ss_pred CcccEEEecchhhhhc
Q 022698 187 NYFDVVVSAAFFHTVG 202 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~ 202 (293)
..-+|++|.++..+|
T Consensus 95 -~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 -FPGFIIANELFDALP 109 (252)
T ss_dssp -CCEEEEEESSGGGS-
T ss_pred -CCEEEEEeeehhcCc
Confidence 245555665554433
No 286
>PRK11524 putative methyltransferase; Provisional
Probab=96.44 E-value=0.012 Score=51.68 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM 165 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~ 165 (293)
.++.+.++.... +++..|||.-+|||..+.+..+. +.+.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l------gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS------GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 467888887764 57889999999999988766554 45999999999999999999753
No 287
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.40 E-value=0.027 Score=50.10 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=78.2
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---CCCCcccEEEe
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---FGDNYFDVVVS 194 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~Iv~ 194 (293)
+++|+.||.|.+...+.+.- ...+.++|+++.+.+.-+.|.. .....|+.++. ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-----~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-----FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-----EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcC-----cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEe
Confidence 68999999999998776552 2478999999998888888754 56778888764 333 5999999
Q ss_pred cchhhhhccccCcchhhhHHH-HHHHHHHHHHcccCCcEEEE--EcCCC------chHHHHHHHHcCCcceEEeeeeccc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAE-RMRVLGEMVRVLKPGGVGVV--WDLLH------VPEYVRRLQELKMEDIRVSERVTAF 265 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~--~~~~~------~~~~~~~l~~~gf~~~~~~~~~~~~ 265 (293)
.+|...+..--...+..+..+ +-.-+-++.+.++|.-.++= .+... ...+.+.|.+.||......-+-..|
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~y 147 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAADY 147 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGG
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccceeehhccccHhhC
Confidence 998766542211122211111 22233334456788554431 11111 2467778888998755444344334
No 288
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.39 E-value=0.012 Score=49.28 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHH
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLR 161 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~ 161 (293)
...++.+.++.... .++..|||.-||||..+.+..+. +.+.+|+|+++...+.|++
T Consensus 176 kP~~l~~~lI~~~t--~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAST--NPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS---TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhh--ccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhcC
Confidence 44568888887774 46789999999999998776654 4589999999999988864
No 289
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.30 E-value=0.092 Score=47.25 Aligned_cols=123 Identities=15% Similarity=0.041 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhh--------c----CCCcEEEEEeCCHHHHHHHHHHHHhcC----CCCc--eEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKK--------T----GSLGRVVGLDCKKRTTLSTLRTAKMEG----VQEY--VTAR 175 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~--------~----~~~~~v~~vDis~~~l~~a~~~~~~~~----~~~~--v~~~ 175 (293)
...-+|+|+||.+|..++.+....-. . .+..+|+-.|.-.+-....-+.+.... -.++ +.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34568999999999999888764321 1 112578888865443332222221110 0111 2333
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhcccc-Ccch--------------------------hhhHHHHHHHHHHHHHccc
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVGKEY-GHRT--------------------------VEAAAERMRVLGEMVRVLK 228 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~-~~~~--------------------------~~~~~~~~~~l~~~~~~Lk 228 (293)
.+.+-+--+|+++.|+++|...+||+...| +... .....|...+|+.=++-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 455444336789999999999999988533 1110 1112344456666667899
Q ss_pred CCcEEEEE
Q 022698 229 PGGVGVVW 236 (293)
Q Consensus 229 pgG~l~~~ 236 (293)
|||++++.
T Consensus 175 ~GG~mvl~ 182 (334)
T PF03492_consen 175 PGGRMVLT 182 (334)
T ss_dssp EEEEEEEE
T ss_pred cCcEEEEE
Confidence 99999873
No 290
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.26 E-value=0.05 Score=53.69 Aligned_cols=143 Identities=16% Similarity=0.149 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhh---cCC-----CcEEEEEeCCH---HHHHHHHH-----------HHHh-----cC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKK---TGS-----LGRVVGLDCKK---RTTLSTLR-----------TAKM-----EG 167 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~---~~~-----~~~v~~vDis~---~~l~~a~~-----------~~~~-----~~ 167 (293)
+.-+|+|+|-|+|.......+...+ .++ .-+++++|..| +.+..+.+ .... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999988888766621 111 25889999654 22222221 1111 12
Q ss_pred C------CC--ceEEEEcCCCCC-CCCCCcccEEEecchhhhhccccCcchhhhHHHH----HHHHHHHHHcccCCcEEE
Q 022698 168 V------QE--YVTAREGDVRSL-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER----MRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 168 ~------~~--~v~~~~~d~~~~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~ 234 (293)
+ .+ ++.+..+|+.+. +.-..+||+++..+.- +..+| .++++.+.++++|||.+.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~Fs-------------P~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFA-------------PAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCC-------------CccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 01 234556776542 2112568999975321 11122 479999999999999987
Q ss_pred EEcCCCchHHHHHHHHcCCcceEEeeeeccceecceeeeeec
Q 022698 235 VWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRK 276 (293)
Q Consensus 235 ~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~ 276 (293)
-.. ....+++.|.++||+.- ...++..+..+..+.+
T Consensus 204 t~t--~a~~vr~~l~~~GF~v~----~~~~~g~kr~~~~~~~ 239 (662)
T PRK01747 204 TFT--SAGFVRRGLQEAGFTVR----KVKGFGRKREMLVGEL 239 (662)
T ss_pred Eee--hHHHHHHHHHHcCCeee----ecCCCchhhhhhhehh
Confidence 653 56789999999999744 2344444455666655
No 291
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.26 E-value=0.053 Score=49.46 Aligned_cols=121 Identities=17% Similarity=0.054 Sum_probs=68.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhh----h-------cCCCcEEEEEeCCHHHHHHHHHHHHhc--------C----CCCce
Q 022698 116 VKTALDIGCGRGILLNAVATQFK----K-------TGSLGRVVGLDCKKRTTLSTLRTAKME--------G----VQEYV 172 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~----~-------~~~~~~v~~vDis~~~l~~a~~~~~~~--------~----~~~~v 172 (293)
..+|+|+|||+|..+..+....- + ..+..++..-|.-.+-....-+.+... . ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 56899999999988766644321 1 112357777776544333222222110 0 00011
Q ss_pred EEE---EcCCCCCCCCCCcccEEEecchhhhhccccC-cc-------------------------hhhhHHHHHHHHHHH
Q 022698 173 TAR---EGDVRSLPFGDNYFDVVVSAAFFHTVGKEYG-HR-------------------------TVEAAAERMRVLGEM 223 (293)
Q Consensus 173 ~~~---~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~-~~-------------------------~~~~~~~~~~~l~~~ 223 (293)
-|. .+.+-+--+|.++.++++|...+||+...|. .. ......|...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 1222222267899999999999999885331 11 011123455566666
Q ss_pred HHcccCCcEEEEE
Q 022698 224 VRVLKPGGVGVVW 236 (293)
Q Consensus 224 ~~~LkpgG~l~~~ 236 (293)
++-|+|||++++.
T Consensus 224 a~ELvpGG~mvl~ 236 (386)
T PLN02668 224 AQEMKRGGAMFLV 236 (386)
T ss_pred HHHhccCcEEEEE
Confidence 7889999999874
No 292
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.022 Score=50.91 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCC--CCCCeEEEEcCCCChHHHHHHHHhhhcCC----CcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE
Q 022698 102 MAQRMVGSVNDW--STVKTALDIGCGRGILLNAVATQFKKTGS----LGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR 175 (293)
Q Consensus 102 ~~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~~----~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~ 175 (293)
+..++++..... +.+..++|+|+|+|.++..+++.+....| ..++.-+|+|+...+.-+++++... ..++.
T Consensus 62 la~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~--~~~~~- 138 (370)
T COG1565 62 LAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE--DLIRW- 138 (370)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc--cchhH-
Confidence 444555444332 23457999999999999999987744332 4799999999997776666665443 11111
Q ss_pred EcCCCCCCCCCCcccEEEecchhhhhc
Q 022698 176 EGDVRSLPFGDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 176 ~~d~~~~~~~~~~fD~Iv~~~~~~~~~ 202 (293)
..+.+ ..+++-.-+||+|..+..+|
T Consensus 139 -~~~~e-~~p~~~~~i~~~NElfDAlP 163 (370)
T COG1565 139 -VEWVE-DLPKKFPGIVVSNELFDALP 163 (370)
T ss_pred -HHHHH-hccccCceEEEechhhcccc
Confidence 11111 12233356777888887766
No 293
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.24 E-value=0.073 Score=50.68 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCC-CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEEc
Q 022698 100 YDMAQRMVGSVND-WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQE-YVTAREG 177 (293)
Q Consensus 100 ~~~~~~l~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~-~v~~~~~ 177 (293)
.++++.+.+.+.. ..+...+.|..||+|.+................+++.+..+.+...+..|....+... .......
T Consensus 201 ~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~ 280 (501)
T TIGR00497 201 QDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINA 280 (501)
T ss_pred HHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccC
Confidence 3455544444433 2255689999999999987654443210002479999999999999998876655432 2233334
Q ss_pred CCCCCC-C-CCCcccEEEecchhhhh-ccc--c-----------C-cchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 178 DVRSLP-F-GDNYFDVVVSAAFFHTV-GKE--Y-----------G-HRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 178 d~~~~~-~-~~~~fD~Iv~~~~~~~~-~~~--~-----------~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
|-...+ . ...+||.|++|||+... ... + + .++. ...-..++..+...|++||...+
T Consensus 281 dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 281 DTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPN--SKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred CcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCC--chhhHHHHHHHHHhcCCCCeEEE
Confidence 433311 1 24579999999998542 100 0 0 0111 12335678888899999997655
No 294
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.23 E-value=0.0016 Score=56.31 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCChHHH-HHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 116 VKTALDIGCGRGILLN-AVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~-~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+..|.|+-+|-|.++. .+...- ...|+|+|.+|.+++..+++++.|++..+.....+|-+.. .++...|.|..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~ag-----Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAG-----AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNL 268 (351)
T ss_pred cchhhhhhcccceEEeehhhccC-----ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheee
Confidence 4689999999999998 555442 3599999999999999999999998877777777887663 45677888886
Q ss_pred c
Q 022698 195 A 195 (293)
Q Consensus 195 ~ 195 (293)
.
T Consensus 269 G 269 (351)
T KOG1227|consen 269 G 269 (351)
T ss_pred c
Confidence 4
No 295
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.22 E-value=0.03 Score=47.40 Aligned_cols=78 Identities=23% Similarity=0.200 Sum_probs=46.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHH---HHHhcCC-----CCceEEEEcCCCCC-CCCCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLR---TAKMEGV-----QEYVTAREGDVRSL-PFGDN 187 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~---~~~~~~~-----~~~v~~~~~d~~~~-~~~~~ 187 (293)
.+|||.-+|-|.-+..++.. +++|+++|-||-.....+. ++..... ..+++++.+|..++ ..++.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS
T ss_pred CEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCC
Confidence 48999999999999988754 4699999999986554443 3332221 14799999998873 34467
Q ss_pred cccEEEecchhhh
Q 022698 188 YFDVVVSAAFFHT 200 (293)
Q Consensus 188 ~fD~Iv~~~~~~~ 200 (293)
+||+|...|.|.+
T Consensus 151 s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 151 SFDVVYFDPMFPE 163 (234)
T ss_dssp --SEEEE--S---
T ss_pred CCCEEEECCCCCC
Confidence 9999999988865
No 296
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=96.00 E-value=0.22 Score=43.83 Aligned_cols=144 Identities=10% Similarity=0.133 Sum_probs=89.1
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC--C-----CCCCcccE
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--P-----FGDNYFDV 191 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~-----~~~~~fD~ 191 (293)
=+|||+|.-++--.+-.... +....++|+.......|..|...+++...+.+++....+- . .++..||.
T Consensus 106 GiDIgtgasci~~llg~rq~----n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydF 181 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQN----NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDF 181 (419)
T ss_pred eeeccCchhhhHHhhhchhc----cceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeE
Confidence 37999888776543332222 4789999999999999999999999888787777644221 0 12345999
Q ss_pred EEecchhhhhcccc-------------------CcchhhhHHHHHHHHHHHH--H-cccCCcEEEEE---cCCCchHHHH
Q 022698 192 VVSAAFFHTVGKEY-------------------GHRTVEAAAERMRVLGEMV--R-VLKPGGVGVVW---DLLHVPEYVR 246 (293)
Q Consensus 192 Iv~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~--~-~LkpgG~l~~~---~~~~~~~~~~ 246 (293)
+.||||+..-..|. +...+...-.-..+..++. + +|+.+=++|-. --...+.+..
T Consensus 182 cMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~~IrwYT~MlGKKsslk~l~~ 261 (419)
T KOG2912|consen 182 CMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRKRIRWYTCMLGKKSSLKPLIS 261 (419)
T ss_pred EecCCchhhchhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhhcceEEeeecccccccHHHHH
Confidence 99999985442111 1111111111223333333 1 23444344331 1134567889
Q ss_pred HHHHcCCcceEEeeeeccce
Q 022698 247 RLQELKMEDIRVSERVTAFM 266 (293)
Q Consensus 247 ~l~~~gf~~~~~~~~~~~~~ 266 (293)
.|++.|-..+.+.+...|..
T Consensus 262 kL~e~gv~kv~itel~qGkT 281 (419)
T KOG2912|consen 262 KLREQGVTKVKITELVQGKT 281 (419)
T ss_pred HHHHcCCceEEEEEeecccc
Confidence 99999988888888877754
No 297
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.98 E-value=0.055 Score=48.37 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC-CCCCCCCCCccc
Q 022698 113 WSTVKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD-VRSLPFGDNYFD 190 (293)
Q Consensus 113 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fD 190 (293)
..|+.+|+=+|+| .|..+..+++.+ +++|+++|.|++.++.|++.-. ..++... ......-.+.||
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCc
Confidence 5678888888887 244444444433 3799999999998887776622 2334332 111111123499
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+|+..-+ ...+....+.|++||.++++...
T Consensus 232 ~ii~tv~-------------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-------------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9998644 23445567799999999986654
No 298
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.0031 Score=49.30 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=39.5
Q ss_pred CCCCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 180 RSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 180 ~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
...++.+++.|+|.+..++.|+. -+....+++++++.|||||+|-+
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt----------~~Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLT----------YDEGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHh----------HHHHHHHHHHHHHHhCcCcEEEE
Confidence 34467889999999999999987 34677899999999999999987
No 299
>PRK13699 putative methylase; Provisional
Probab=95.91 E-value=0.036 Score=47.01 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME 166 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~ 166 (293)
.++.+.++.... .++..|||.-||+|..+.+..+. +.+.+|+|+++...+.+.++....
T Consensus 150 ~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 457777776654 46779999999999998776654 458999999999999998887653
No 300
>PTZ00357 methyltransferase; Provisional
Probab=95.82 E-value=0.057 Score=52.11 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=56.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH-HhcCC-------CCceEEEEcCCCCCCCCC---
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA-KMEGV-------QEYVTAREGDVRSLPFGD--- 186 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~-~~~~~-------~~~v~~~~~d~~~~~~~~--- 186 (293)
.|+=+|+|-|-+....++.....+-..+|+++|-++.+......+. ....+ .++|+++..|++.+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999998888877766555679999999977554444432 22233 346999999999874221
Q ss_pred --------CcccEEEe
Q 022698 187 --------NYFDVVVS 194 (293)
Q Consensus 187 --------~~fD~Iv~ 194 (293)
+++|+|||
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 37999997
No 301
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.77 E-value=0.04 Score=47.39 Aligned_cols=130 Identities=19% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCeEEEEcCCCChHHHHHH-HHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC---CCcccE
Q 022698 116 VKTALDIGCGRGILLNAVA-TQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG---DNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~-~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~ 191 (293)
++.|+=+| -.--.+++++ ..+| .++..+||++..+....+.++..|. ++++....|+++ |++ .++||+
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mp-----k~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMP-----KRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCC-----ceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcc-cChHHHHhhCCe
Confidence 45688888 3333333322 1223 5999999999999999999999887 458888999988 444 378999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC---cEEEEEcCC-Cc---hHHHH-HHHHcCCcceEEeeeec
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG---GVGVVWDLL-HV---PEYVR-RLQELKMEDIRVSERVT 263 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~-~~---~~~~~-~l~~~gf~~~~~~~~~~ 263 (293)
++..||.-.- ....++.+=...||.- |.+.+.-.. +. -++.+ ++.+.||....++.++.
T Consensus 225 fiTDPpeTi~-------------alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdiirnFN 291 (354)
T COG1568 225 FITDPPETIK-------------ALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDIIRNFN 291 (354)
T ss_pred eecCchhhHH-------------HHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhhhhhhh
Confidence 9998875432 5667777777788876 566663221 22 23444 56678887766666555
Q ss_pred cce
Q 022698 264 AFM 266 (293)
Q Consensus 264 ~~~ 266 (293)
.++
T Consensus 292 ~Y~ 294 (354)
T COG1568 292 EYV 294 (354)
T ss_pred ccc
Confidence 543
No 302
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.76 E-value=0.059 Score=45.43 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHhcC--CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEE
Q 022698 97 PLHYDMAQRMVGSVN--DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTA 174 (293)
Q Consensus 97 ~~~~~~~~~l~~~~~--~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~ 174 (293)
+....++..++.-+. ++.++.+||-+|+++|....++..-... ..-|+++|.|+..=.....-++.. .++--
T Consensus 136 PfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGp---eG~VYAVEfs~rsGRdL~nmAkkR---tNiiP 209 (317)
T KOG1596|consen 136 PFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGP---EGCVYAVEFSHRSGRDLINMAKKR---TNIIP 209 (317)
T ss_pred hHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCC---CceEEEEEecccchHHHHHHhhcc---CCcee
Confidence 344556666654433 3578899999999999998887766543 468999999987544443333322 34556
Q ss_pred EEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHH-HHHHHHHHHcccCCcEEEE
Q 022698 175 REGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER-MRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 175 ~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~ 235 (293)
+.-|+.... ..-+-.|+|++.-+- + +. ..+.-++...||+||.+++
T Consensus 210 IiEDArhP~KYRmlVgmVDvIFaDvaq---p------------dq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 210 IIEDARHPAKYRMLVGMVDVIFADVAQ---P------------DQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred eeccCCCchheeeeeeeEEEEeccCCC---c------------hhhhhhhhhhhhhhccCCeEEE
Confidence 667776521 122458888875221 0 22 2344456778999999887
No 303
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.55 E-value=0.0082 Score=44.29 Aligned_cols=42 Identities=19% Similarity=0.463 Sum_probs=31.0
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
+||+|+|..+.-++.-..| ++....+++++++.|+|||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~G------D~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWG------DEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHH------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCc------CHHHHHHHHHHHHhhCCCCEEEE
Confidence 4899999888655542222 23567899999999999999998
No 304
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.49 E-value=0.35 Score=41.51 Aligned_cols=137 Identities=16% Similarity=0.070 Sum_probs=75.8
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC-CCcEEEEEeCCH--------------------------HHHH
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG-SLGRVVGLDCKK--------------------------RTTL 157 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-~~~~v~~vDis~--------------------------~~l~ 157 (293)
.+++.+....-++.|+|.||-.|..++.++..+...+ ...++++.|.=+ ..++
T Consensus 64 ~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e 143 (248)
T PF05711_consen 64 QAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLE 143 (248)
T ss_dssp HHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHH
T ss_pred HHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHH
Confidence 3444443223456899999999988876665553322 235788887321 1345
Q ss_pred HHHHHHHhcCC-CCceEEEEcCCCC-CC-CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 158 STLRTAKMEGV-QEYVTAREGDVRS-LP-FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 158 ~a~~~~~~~~~-~~~v~~~~~d~~~-~~-~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
..++|+...++ .+++.++.+.+.+ +| .+..++-++....-++ . .....|+.++..|.|||+++
T Consensus 144 ~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--e------------sT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 144 EVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--E------------STKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp HHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--H------------HHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch--H------------HHHHHHHHHHhhcCCCeEEE
Confidence 55566655553 3579999999864 33 1223343333332111 1 44678899999999999999
Q ss_pred EEcCCC---chHHHHHHHHcCCcc
Q 022698 235 VWDLLH---VPEYVRRLQELKMED 255 (293)
Q Consensus 235 ~~~~~~---~~~~~~~l~~~gf~~ 255 (293)
+-++.. ...+.+.+.+.|...
T Consensus 210 ~DDY~~~gcr~AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 210 FDDYGHPGCRKAVDEFRAEHGITD 233 (248)
T ss_dssp ESSTTTHHHHHHHHHHHHHTT--S
T ss_pred EeCCCChHHHHHHHHHHHHcCCCC
Confidence 966655 223556666777653
No 305
>PHA01634 hypothetical protein
Probab=95.43 E-value=0.1 Score=39.58 Aligned_cols=72 Identities=11% Similarity=-0.028 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+++|+|||++.|..++..+..- ..+|++++.++...+..+++.+.+.+-++.. ....+ +-.-+.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-----AK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~eW---~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-----ASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKGEW---NGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-----ccEEEEeccCHHHHHHHHHHhhhheeeecee-ecccc---cccCCCcceEEE
Confidence 46799999999999998887653 2599999999999999998887765422221 11122 212356888775
Q ss_pred c
Q 022698 195 A 195 (293)
Q Consensus 195 ~ 195 (293)
.
T Consensus 99 D 99 (156)
T PHA01634 99 D 99 (156)
T ss_pred E
Confidence 3
No 306
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.25 E-value=0.19 Score=47.73 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-----------
Q 022698 114 STVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS----------- 181 (293)
Q Consensus 114 ~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~----------- 181 (293)
.++.+|+=+|+|. |..++..++.+ +++|+++|.+++.++.+++. |. ++...|..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-----GA~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~ 229 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-----GAIVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKV 229 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhh
Confidence 4678999999998 55555555544 36899999999987777653 32 222111111
Q ss_pred CC----------CCC--CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 182 LP----------FGD--NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 182 ~~----------~~~--~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.. +.+ ..+|+|+........+ .+..+.+++.+.+||||.++.+..
T Consensus 230 ~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~------------aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 230 MSEEFIKAEMALFAEQAKEVDIIITTALIPGKP------------APKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cchhHHHHHHHHHHhccCCCCEEEECCCCCccc------------CcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 011 3589999764432221 233445888999999999887654
No 307
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=95.13 E-value=0.39 Score=40.81 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCC
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVR 180 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 180 (293)
+..+..++.+.+.+++.+ |..-|||--++..+.+.- -++.++|+.|+-....++++.. ..++.+.+.|..
T Consensus 75 a~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~q------DRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~ 144 (279)
T COG2961 75 AELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLREQ------DRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGF 144 (279)
T ss_pred HHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcchh------ceeeeeecCccHHHHHHHHhCC---CcceEEEecCcH
Confidence 344445555555566655 899999998888777652 3899999999988888888773 256899999975
Q ss_pred C-----CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHccc--CCcEEEEEc-CCCch---HHHHHHH
Q 022698 181 S-----LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK--PGGVGVVWD-LLHVP---EYVRRLQ 249 (293)
Q Consensus 181 ~-----~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~-~~~~~---~~~~~l~ 249 (293)
. +| +.++=-+|+..|||+.-. +...+++.+.+.++ ++|...++- ..... .+.+.++
T Consensus 145 ~~l~a~LP-P~erRglVLIDPPfE~~~------------eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 145 LALKAHLP-PKERRGLVLIDPPFELKD------------EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALE 211 (279)
T ss_pred HHHhhhCC-CCCcceEEEeCCCccccc------------HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHh
Confidence 4 23 344568999999998765 66666666666555 467766643 33334 4555555
Q ss_pred HcCCc
Q 022698 250 ELKME 254 (293)
Q Consensus 250 ~~gf~ 254 (293)
+.|..
T Consensus 212 ~~~i~ 216 (279)
T COG2961 212 ALGIR 216 (279)
T ss_pred hcCcc
Confidence 66653
No 308
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.07 E-value=0.71 Score=36.90 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---CCCccc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---GDNYFD 190 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---~~~~fD 190 (293)
+..+|+-|||=+-... +.+ ...+..+++..|++.. .+..+ +. .|..-|..... + -.++||
T Consensus 25 ~~~~iaclstPsl~~~--l~~---~~~~~~~~~Lle~D~R--------F~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d 88 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEA--LKK---ESKPRIQSFLLEYDRR--------FEQFG--GD-EFVFYDYNEPEELPEELKGKFD 88 (162)
T ss_pred CCCEEEEEeCcHHHHH--HHh---hcCCCccEEEEeecch--------HHhcC--Cc-ceEECCCCChhhhhhhcCCCce
Confidence 4578999998653332 222 1122468999999765 33322 22 46666765521 1 147899
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEe
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVS 259 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~ 259 (293)
+|++.||+-.-+ ........+.-++++++.++++.....+++...+- |+......
T Consensus 89 ~vv~DPPFl~~e------------c~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll--~~~~~~f~ 143 (162)
T PF10237_consen 89 VVVIDPPFLSEE------------CLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL--GLRMCDFQ 143 (162)
T ss_pred EEEECCCCCCHH------------HHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh--CeeEEeEE
Confidence 999999993322 44556666666778888888866433333332222 55544443
No 309
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.69 E-value=0.052 Score=41.39 Aligned_cols=91 Identities=25% Similarity=0.313 Sum_probs=54.0
Q ss_pred eEEEEcCCCCC-CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHH
Q 022698 172 VTAREGDVRSL-PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQE 250 (293)
Q Consensus 172 v~~~~~d~~~~-~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~ 250 (293)
+.+..+|+.+. +--...||+|+..+.--...++. =-.++++++.++++|||.+..+. ....+++.|.+
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPel---------Ws~e~~~~l~~~~~~~~~l~Tys--~a~~Vr~~L~~ 101 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPEL---------WSEELFKKLARLSKPGGTLATYS--SAGAVRRALQQ 101 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGG---------SSHHHHHHHHHHEEEEEEEEES----BHHHHHHHHH
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCcCCccc---------CCHHHHHHHHHHhCCCcEEEEee--chHHHHHHHHH
Confidence 56667776542 21136789998753211110000 01479999999999999876644 45779999999
Q ss_pred cCCcceEEeeeeccceecceeeeeecC
Q 022698 251 LKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 251 ~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+||.+- ...++..+..++.+.+|
T Consensus 102 aGF~v~----~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 102 AGFEVE----KVPGFGRKREMLRAVKP 124 (124)
T ss_dssp CTEEEE----EEE-STTSSEEEEEEC-
T ss_pred cCCEEE----EcCCCCCcchheEEEcC
Confidence 999843 33455556678877764
No 310
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.58 E-value=0.25 Score=44.07 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=74.2
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-CCCcccEEEecch
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-GDNYFDVVVSAAF 197 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Iv~~~~ 197 (293)
|+|+.||.|.+..-+.+. | -.-+.++|+++.+.+.-+.|... .+...|+.++.. .-..+|+++..+|
T Consensus 1 vidLF~G~GG~~~Gl~~a----G-~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA----G-FKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc----C-CeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999998777543 1 13466899999988888877532 234567766532 1235899999988
Q ss_pred hhhhccccCcchhhh-HHHHHHHHHHHHHcccCCcEEEEEcCC---------CchHHHHHHHHcCCcceEE
Q 022698 198 FHTVGKEYGHRTVEA-AAERMRVLGEMVRVLKPGGVGVVWDLL---------HVPEYVRRLQELKMEDIRV 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~---------~~~~~~~~l~~~gf~~~~~ 258 (293)
.......-...+..+ ...+..-+-++.+.++|. .+++=++. ....+...|++.||.....
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEE
Confidence 766553211122211 112222233344556775 33331211 1245677788899975433
No 311
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.35 E-value=0.23 Score=44.56 Aligned_cols=127 Identities=14% Similarity=0.090 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC---CCcccEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG---DNYFDVV 192 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~I 192 (293)
..+++|+.||.|.+..-+...- -.-+.++|+++.+++.-+.|... ..+...|+.+.... ...+|++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-----f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-----FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-----CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEE
Confidence 3579999999999987665442 24788999999988887777543 34556676654311 1179999
Q ss_pred EecchhhhhccccCcchhhhHH-HHHHHHHHHHHcccCCcEEEEEcC--------CCchHHHHHHHHcCCc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAA-ERMRVLGEMVRVLKPGGVGVVWDL--------LHVPEYVRRLQELKME 254 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~--------~~~~~~~~~l~~~gf~ 254 (293)
+..+|...+..--...+..+.. .+.--+.++...++| -.+++=++ .....+.+.|++.||.
T Consensus 72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 9999987665321112222111 122345556677888 33443121 1235688888999996
No 312
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.25 E-value=0.47 Score=43.47 Aligned_cols=115 Identities=21% Similarity=0.277 Sum_probs=65.4
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC-CCC-C-CC-CC
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD-VRS-L-PF-GD 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d-~~~-~-~~-~~ 186 (293)
...++.+||..|+|. |..+..+++... ..+++++|.+++.++.+++.. +. ..+.....+ ... + .. ..
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g----~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG----AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGG 252 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCC
Confidence 456678999999877 777777776643 136999999999888777642 11 111111111 100 0 11 22
Q ss_pred CcccEEEecchhh-------hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 NYFDVVVSAAFFH-------TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 ~~fD~Iv~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+|+|+..-.-. .+. . ..+....+....+.++.+.++++|.++.+..
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAE---Q-ALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCEEEECCCCccccccccccc---c-cccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 3589998742110 000 0 0000011345577888999999999988653
No 313
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.25 E-value=0.16 Score=46.07 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCC--CCCCC-Ccc
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRS--LPFGD-NYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~--~~~~~-~~f 189 (293)
++.+|+=+|||+ |..+..+++.+. ..+|+++|.++.-++.|++.....- +..... +... ..... ..+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G----a~~Viv~d~~~~Rl~~A~~~~g~~~----~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG----ASVVIVVDRSPERLELAKEAGGADV----VVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC----CceEEEeCCCHHHHHHHHHhCCCeE----eecCccccHHHHHHHHhCCCCC
Confidence 344899999998 666666666654 4699999999999998887432210 111111 1100 01112 259
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
|+++-... . ...+..+.+.++|||.+.++....
T Consensus 240 D~vie~~G---~---------------~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 240 DVVIEAVG---S---------------PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CEEEECCC---C---------------HHHHHHHHHHhcCCCEEEEEeccC
Confidence 99996433 1 236778888999999999876553
No 314
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.24 E-value=0.21 Score=44.88 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+||=.|+ |.++....+.....| ..+|+++|.+++.++.+++ .|...-+.....+..+.....+.+|+|+
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 35678888886 455544443333322 2379999999997776654 2321101111111111111123589888
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.... . ...+..+.+.|++||.++.+..
T Consensus 241 d~~G-----------------~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 241 EVSG-----------------H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ECCC-----------------C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 6421 1 1345667788999999998764
No 315
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.21 E-value=0.31 Score=42.90 Aligned_cols=117 Identities=20% Similarity=0.134 Sum_probs=73.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhh----hc------------CCCcEEEEEeCCHH--HHHHHHHHHHhc-----------
Q 022698 116 VKTALDIGCGRGILLNAVATQFK----KT------------GSLGRVVGLDCKKR--TTLSTLRTAKME----------- 166 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~----~~------------~~~~~v~~vDis~~--~l~~a~~~~~~~----------- 166 (293)
..+||.||.|.|.-..+++..+. .. .+...++.+||.+= .+..........
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 36899999999999999988871 10 11248999999763 333333333222
Q ss_pred -----CCCCceEEEEcCCCCCCCCC-------CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 167 -----GVQEYVTAREGDVRSLPFGD-------NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 167 -----~~~~~v~~~~~d~~~~~~~~-------~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
.-.-++.|.+.|+..+..++ ...|+|.....++.+=-+ .......++.++-..++||..|+
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~-------s~~kTt~FLl~Lt~~~~~GslLL 239 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST-------SISKTTKFLLRLTDICPPGSLLL 239 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc-------ChHHHHHHHHHHHhhcCCCcEEE
Confidence 00124789999998764211 135666554444322100 01245679999999999999999
Q ss_pred EEcCC
Q 022698 235 VWDLL 239 (293)
Q Consensus 235 ~~~~~ 239 (293)
|++..
T Consensus 240 VvDSp 244 (315)
T PF11312_consen 240 VVDSP 244 (315)
T ss_pred EEcCC
Confidence 98754
No 316
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.10 E-value=1.3 Score=32.80 Aligned_cols=106 Identities=22% Similarity=0.157 Sum_probs=69.0
Q ss_pred CCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEEecchhh
Q 022698 124 CGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 124 ~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv~~~~~~ 199 (293)
||.|.++..+++.+.+. +.+++.+|.+++..+.++.. + +.++.+|..+.. ..-.+.|.|++...=
T Consensus 4 ~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~- 72 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVILTDD- 72 (116)
T ss_dssp ES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEEESSS-
T ss_pred EcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEEccCC-
Confidence 67789999999998873 35899999999976655433 3 578889987632 122468888875321
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
+.....+....+.+.|...++..- ..++..+.|++.|...+
T Consensus 73 --------------d~~n~~~~~~~r~~~~~~~ii~~~--~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 73 --------------DEENLLIALLARELNPDIRIIARV--NDPENAELLRQAGADHV 113 (116)
T ss_dssp --------------HHHHHHHHHHHHHHTTTSEEEEEE--SSHHHHHHHHHTT-SEE
T ss_pred --------------HHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHCCcCEE
Confidence 122234444556677777766532 35778888888887643
No 317
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.01 E-value=0.97 Score=37.65 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=53.6
Q ss_pred CCCCeEEEEcCCCCh--HHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-CCCCCCccc
Q 022698 114 STVKTALDIGCGRGI--LLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-LPFGDNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~--~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD 190 (293)
.....++++.|+.|. .++.|+..-... +.+++++-..+..+...++.....+..+.++|+.++..+ +-..-...|
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~T--gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iD 117 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQT--GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGID 117 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhc--CCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCC
Confidence 445679999776554 344444443333 469999999999888888888877776667998887532 211123578
Q ss_pred EEEec
Q 022698 191 VVVSA 195 (293)
Q Consensus 191 ~Iv~~ 195 (293)
+++..
T Consensus 118 F~vVD 122 (218)
T PF07279_consen 118 FVVVD 122 (218)
T ss_pred EEEEe
Confidence 88864
No 318
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.00 E-value=1.3 Score=38.07 Aligned_cols=78 Identities=17% Similarity=0.092 Sum_probs=52.4
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+++ +.++..+++.+.+.| .+|+.++.++...+.+.+..+..+ .+.++.+|+.+.. +
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G--~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALG--AELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcC--CEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 56899999888 489999999887764 588888988654433333332222 2456778887532 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|..+
T Consensus 85 ~~g~ld~lv~nAg~ 98 (258)
T PRK07533 85 EWGRLDFLLHSIAF 98 (258)
T ss_pred HcCCCCEEEEcCcc
Confidence 12578999998654
No 319
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.96 E-value=0.043 Score=40.32 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK 152 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis 152 (293)
+....+|||||+|-+...|.++ +-.-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE------GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC------CCCccccccc
Confidence 4557999999999988777765 4577888864
No 320
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.82 E-value=0.44 Score=38.90 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-------CCCc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-------GDNY 188 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~ 188 (293)
+..|+|+|.-.|..++..+...-+.|...+|+++||+-..+..+... .+++.|+.++-.+... ..+.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 45799999999999988888766655568999999987654433322 2559999999876431 1232
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
--+.+|-..-|+.. .....++-..++|..|-.+++-
T Consensus 144 ~kIfvilDsdHs~~------------hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 144 PKIFVILDSDHSME------------HVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred CcEEEEecCCchHH------------HHHHHHHHhhhHhhcCceEEEe
Confidence 33444444445544 5567778888999999998883
No 321
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.60 E-value=0.26 Score=43.56 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEE-EcC-CCCC------
Q 022698 112 DWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAR-EGD-VRSL------ 182 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~-~~d-~~~~------ 182 (293)
....+.+||=+|+|. |-.+...++.+. ..+|+.+|+++..++.|++ + |... +... ..+ ..++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G----A~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG----ASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEK 236 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcC----CCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHh
Confidence 356788999999998 666666676665 4699999999999999988 3 3211 1111 111 0110
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
......+|+.+...-.+ ..++.....+++||.+++++.
T Consensus 237 ~~g~~~~d~~~dCsG~~------------------~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCSGAE------------------VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred hccccCCCeEEEccCch------------------HHHHHHHHHhccCCEEEEecc
Confidence 02234588888654332 344556778999999887654
No 322
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.59 E-value=0.091 Score=45.45 Aligned_cols=104 Identities=16% Similarity=0.065 Sum_probs=59.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHH-------HHHHHH--hcCCCCceEEEEc---CCCC
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLS-------TLRTAK--MEGVQEYVTAREG---DVRS 181 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~-------a~~~~~--~~~~~~~v~~~~~---d~~~ 181 (293)
..+++|||+|||+|-..+...... ...+...|.|...++. +.-++. ......-...... |+.-
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-----~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~ 189 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-----AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVF 189 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-----cceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchh
Confidence 457899999999998887776552 2578888888776621 111111 1110011222233 2211
Q ss_pred CCCCC-CcccEEEecchhhhhccccCcchhhhHHHHHHH-HHHHHHcccCCcEEEE
Q 022698 182 LPFGD-NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRV-LGEMVRVLKPGGVGVV 235 (293)
Q Consensus 182 ~~~~~-~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~~ 235 (293)
. ... .+||+|.+...++... ....+ ......+++++|.+++
T Consensus 190 ~-~t~~~~ydlIlsSetiy~~~------------~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 190 N-HTERTHYDLILSSETIYSID------------SLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred h-hccccchhhhhhhhhhhCcc------------hhhhhHhhhhhhcCCccchhhh
Confidence 1 111 2789998887766554 34444 4445567888998876
No 323
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.58 E-value=0.043 Score=49.91 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEcCCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREGDVRS 181 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~ 181 (293)
.+++..|.|+.||.|-+++.++.. +++|++-|.++++++..+.|++.+.+.+. ++.+..|+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 357789999999999999888776 58999999999999999999999988765 8888887754
No 324
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.51 E-value=0.09 Score=48.80 Aligned_cols=115 Identities=14% Similarity=0.049 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-------CCCCC
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-------PFGDN 187 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~ 187 (293)
....+|-+|-|+|.+...+...+| .++++++++.|.+++.+..++....- .+..+.-.|..+. .-.+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p----~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP----KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDI 369 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC----ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhcccccc
Confidence 345789999999999999988887 46999999999999999998754431 1234444444321 01356
Q ss_pred cccEEEec---chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 188 YFDVVVSA---AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 188 ~fD~Iv~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
.||++... ...+.+. .+ .+..-...++..+...|.|.|.+++.-...
T Consensus 370 ~~dvl~~dvds~d~~g~~-----~p-p~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 370 CPDVLMVDVDSKDSHGMQ-----CP-PPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred CCcEEEEECCCCCcccCc-----CC-chHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 79999863 1111111 00 011123467888889999999998844333
No 325
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.95 E-value=3.2 Score=35.66 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+... +.+|++++.+++.++...+.....+ .++.++..|+.+.. + .
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARA--GANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 55788777 5778888888888765 4689999998876665544444332 34678888987532 1 1
Q ss_pred CCcccEEEecch
Q 022698 186 DNYFDVVVSAAF 197 (293)
Q Consensus 186 ~~~fD~Iv~~~~ 197 (293)
.+++|+++++..
T Consensus 84 ~~~iD~vi~~ag 95 (264)
T PRK07576 84 FGPIDVLVSGAA 95 (264)
T ss_pred cCCCCEEEECCC
Confidence 246899998754
No 326
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.71 E-value=1 Score=39.10 Aligned_cols=74 Identities=22% Similarity=0.134 Sum_probs=50.4
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----CCCc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----GDNY 188 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~ 188 (293)
.+|=-|+ |.++..+++.+. . +.+|+.+|.++..++...+..+..+ .++.++.+|+.+.. + ..++
T Consensus 4 ~~lItGa--~gIG~~la~~l~-~--G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~ 76 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVG-A--GKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGP 76 (275)
T ss_pred EEEEECC--ChHHHHHHHHHh-C--CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence 4554554 579999999885 3 4799999998877665555444333 34778889987632 1 1256
Q ss_pred ccEEEecchh
Q 022698 189 FDVVVSAAFF 198 (293)
Q Consensus 189 fD~Iv~~~~~ 198 (293)
.|+++.|...
T Consensus 77 id~li~nAG~ 86 (275)
T PRK06940 77 VTGLVHTAGV 86 (275)
T ss_pred CCEEEECCCc
Confidence 8999988654
No 327
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=92.69 E-value=0.23 Score=45.37 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=59.1
Q ss_pred CceEEEEcCCCCCC--CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHH
Q 022698 170 EYVTAREGDVRSLP--FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRR 247 (293)
Q Consensus 170 ~~v~~~~~d~~~~~--~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 247 (293)
++++++..++.+.. .+++++|.++......+++ .....+.++++.+.++|||++++-+....+.+...
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~----------~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~~~~~ 344 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMD----------PEQLNEEWQELARTARPGARVLWRSAAVPPWYPGR 344 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCC----------HHHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCccc
Confidence 77999999987742 3578999999999999988 34778899999999999999999766555554444
Q ss_pred H--HHcCCcc
Q 022698 248 L--QELKMED 255 (293)
Q Consensus 248 l--~~~gf~~ 255 (293)
+ .+.+|..
T Consensus 345 ~~~~~~~~~~ 354 (380)
T PF11899_consen 345 FLLERWGFDE 354 (380)
T ss_pred ccHHhhcccH
Confidence 4 5555553
No 328
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.67 E-value=6.6 Score=34.50 Aligned_cols=80 Identities=25% Similarity=0.259 Sum_probs=61.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
.++.||==|+|+| +++.++.++.++| +++..+|++++..+...+..+..| ++....+|+.+.. -
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg--~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRG--AKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhC--CeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 4567888887776 6788888888774 599999999998887777777665 4889999997642 1
Q ss_pred CCCcccEEEecchhhh
Q 022698 185 GDNYFDVVVSAAFFHT 200 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~ 200 (293)
.-+..|++|.|..+-+
T Consensus 111 e~G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVT 126 (300)
T ss_pred hcCCceEEEecccccc
Confidence 2367999999876543
No 329
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.58 E-value=1.8 Score=38.25 Aligned_cols=98 Identities=22% Similarity=0.197 Sum_probs=57.9
Q ss_pred CCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----CC
Q 022698 111 NDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----PF 184 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 184 (293)
....++.+||..|+|. |..+..+++.. +.++++++.++...+.+++ .+.. .+....-... ..
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~-----G~~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~ 228 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAM-----GAAVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAG 228 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHh
Confidence 3456677888877652 45555555443 3689999999987766643 2321 1111110000 11
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
..+.+|+|+.+.. ....++++.+.|+++|.++....
T Consensus 229 ~~~~~D~vid~~g------------------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 229 LGGGFDVIFDFVG------------------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred cCCCceEEEECCC------------------CHHHHHHHHHHhhcCCEEEEECC
Confidence 2456898885421 12456778899999999987643
No 330
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.28 E-value=3.2 Score=35.60 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=51.0
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCH---HHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C--
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKK---RTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~---~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-- 184 (293)
++++|=.|+++ +.++..+++.+.+.| ++|+.++.+. +.++...+ ... ..++.++.+|+.+.. +
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G--~~v~~~~r~~~~~~~~~~~~~---~~~-~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAG--AKLVFTYAGERLEKEVRELAD---TLE-GQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCC--CEEEEecCcccchHHHHHHHH---HcC-CCceEEEecCCCCHHHHHHHHHH
Confidence 56899999884 889999999988764 5888886543 33332222 211 134778889987632 0
Q ss_pred ---CCCcccEEEecchh
Q 022698 185 ---GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ---~~~~fD~Iv~~~~~ 198 (293)
.-+++|+++.|..+
T Consensus 81 ~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 81 IKEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHHhCCCccEEEECccc
Confidence 12679999988654
No 331
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.25 E-value=2.2 Score=39.44 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=85.7
Q ss_pred CCCeEEEEcC-CCChHH--HHHHHHhhhcCCCcEEEEEeC-CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC------
Q 022698 115 TVKTALDIGC-GRGILL--NAVATQFKKTGSLGRVVGLDC-KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF------ 184 (293)
Q Consensus 115 ~~~~vLDiG~-G~G~~~--~~l~~~~~~~~~~~~v~~vDi-s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~------ 184 (293)
++..|+=+|- |+|-.+ .-|+.++.+.+...-++++|+ -|.|+++.+..+...+ +.|+..+-..-|.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~----v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG----VPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcC----CceecCCCCCCHHHHHHHH
Confidence 4556777763 555443 445667766665667888895 5778888888888776 4555544333231
Q ss_pred ----CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHH---HH-HHcCCcce
Q 022698 185 ----GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVR---RL-QELKMEDI 256 (293)
Q Consensus 185 ----~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~l-~~~gf~~~ 256 (293)
....||+|++...=.+.- +++.-+-+++++..++|.=.|+++|.....+... .| ++.|+..+
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~i----------de~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGv 244 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHI----------DEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGV 244 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccc----------cHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceE
Confidence 235699999875543222 2366678889999999999999999877765333 33 24466655
Q ss_pred EEe
Q 022698 257 RVS 259 (293)
Q Consensus 257 ~~~ 259 (293)
-+.
T Consensus 245 IlT 247 (451)
T COG0541 245 ILT 247 (451)
T ss_pred EEE
Confidence 443
No 332
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=1.2 Score=40.58 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=80.6
Q ss_pred CeEEEEcC-CCCh--HHHHHHHHhhhcCCCcEEEEEe-CCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---------
Q 022698 117 KTALDIGC-GRGI--LLNAVATQFKKTGSLGRVVGLD-CKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------- 183 (293)
Q Consensus 117 ~~vLDiG~-G~G~--~~~~l~~~~~~~~~~~~v~~vD-is~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 183 (293)
..|+=+|- |+|- ...-++.++.+.|...-++|.| .-+.+.++.++|+...++ .|+..--..-|
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~i----P~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARV----PFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCC----eeEecccccchHHHHHHHHH
Confidence 34555553 3343 3334566667777767778888 567788899999888764 44432111112
Q ss_pred -CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHH---HH-HHcCCcceEE
Q 022698 184 -FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVR---RL-QELKMEDIRV 258 (293)
Q Consensus 184 -~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~l-~~~gf~~~~~ 258 (293)
+..+.||+|++...-.|-. ....-+-+.++.+.++|+-++++.|........+ .+ ...++..+-+
T Consensus 178 ~fKke~fdvIIvDTSGRh~q----------e~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIl 247 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQ----------EASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVIL 247 (483)
T ss_pred HHHhcCCcEEEEeCCCchhh----------hHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEE
Confidence 2346799999986655544 2245556777889999999999988876554332 33 2445555544
Q ss_pred e
Q 022698 259 S 259 (293)
Q Consensus 259 ~ 259 (293)
.
T Consensus 248 T 248 (483)
T KOG0780|consen 248 T 248 (483)
T ss_pred E
Confidence 3
No 333
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.78 E-value=2 Score=39.86 Aligned_cols=103 Identities=15% Similarity=0.165 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++......++.+|+=+|+|. ++..++..+... +++|+++|+++..++.|+. .|. ... +..+
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~--IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e 253 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGD--VGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE 253 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCH--HHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH
Confidence 3455555544334678999999986 444444444333 4689999999886665543 332 111 1111
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHH-HHHHcccCCcEEEEEcCC
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLG-EMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~ 239 (293)
. . ..+|+|+.... .. ..+. ...+.+++||+++.+...
T Consensus 254 ~-v--~~aDVVI~atG-----------------~~-~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 254 A-V--KEGDIFVTTTG-----------------NK-DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred H-H--cCCCEEEECCC-----------------CH-HHHHHHHHhcCCCCcEEEEeCCC
Confidence 1 1 34799987522 11 2333 347799999999887754
No 334
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.78 E-value=4.4 Score=34.37 Aligned_cols=79 Identities=19% Similarity=0.105 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.++..++...+..+..+ .++.++.+|+.+.. + .
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAG--AEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 56788777 57889999999887764 589999999887766555554433 34778888987632 1 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|.|+.+....
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 24689999886543
No 335
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.59 E-value=0.98 Score=38.39 Aligned_cols=101 Identities=25% Similarity=0.231 Sum_probs=57.9
Q ss_pred hcCCCCCCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----
Q 022698 109 SVNDWSTVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----- 182 (293)
Q Consensus 109 ~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----- 182 (293)
.+....++.+||-.|+|+ |..+..+++. . +.++++++.++...+.+++. +.. .++...-...
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~---~--g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~ 195 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKA---A--GARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELR 195 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHH---c--CCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHH
Confidence 333345678999999886 4344434433 2 36999999998766655432 211 1111110110
Q ss_pred CCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 183 PFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 183 ~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
....+.+|+++.+..- ...+..+.+.|+++|.++.....
T Consensus 196 ~~~~~~~d~vi~~~~~------------------~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 196 LTGGGGADVVIDAVGG------------------PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred HhcCCCCCEEEECCCC------------------HHHHHHHHHhcccCCEEEEEccC
Confidence 0123569999865221 13455667789999999886543
No 336
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.57 E-value=0.63 Score=44.23 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC------------
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS------------ 181 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~------------ 181 (293)
++.+++=+|+|. |..+..+++.+ ++.|+++|.++..++.++. .+. +++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-----GA~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-----GAIVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeec
Confidence 567999999976 33333333332 3689999999997666554 232 232222211
Q ss_pred -----------CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 182 -----------LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 182 -----------~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
++-.-..+|+|+..-.+...+ .|..+.++..+.+|||+.++
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~------------aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKP------------APKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCC------------CCeeehHHHHhhCCCCCEEE
Confidence 000124589998765333322 34456677788899998876
No 337
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.41 E-value=6 Score=34.10 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=53.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---------CCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---------GDN 187 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~ 187 (293)
.++|=.| |+|.++..+++.+.+. +.+|++++.+++.++...+.....+...++.++.+|+.+... .-+
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKK--GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 4577777 5667888888887765 468999998887766555444443433458899999876321 014
Q ss_pred cccEEEecchh
Q 022698 188 YFDVVVSAAFF 198 (293)
Q Consensus 188 ~fD~Iv~~~~~ 198 (293)
+.|.|+.+...
T Consensus 81 ~id~vv~~ag~ 91 (280)
T PRK06914 81 RIDLLVNNAGY 91 (280)
T ss_pred CeeEEEECCcc
Confidence 67999887554
No 338
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.40 E-value=0.57 Score=42.31 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=39.0
Q ss_pred HHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH
Q 022698 106 MVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT 162 (293)
Q Consensus 106 l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~ 162 (293)
++..+....+-..++|+|+|.|.++..+.-.+ +..|.++|-|....+.|++.
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-----~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-----GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-----CceEEEeccchHHHHHHHHH
Confidence 33444444556689999999999998887654 47999999998877766653
No 339
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.31 E-value=0.62 Score=35.21 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=54.8
Q ss_pred CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC------CCCCcccEEEecchhh
Q 022698 126 RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP------FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 126 ~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~Iv~~~~~~ 199 (293)
.|..+..+++.. +.+|+++|.++..++.+++. |. ..++..+-.++. .....+|+|+-...-
T Consensus 2 vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~- 68 (130)
T PF00107_consen 2 VGLMAIQLAKAM-----GAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS- 68 (130)
T ss_dssp HHHHHHHHHHHT-----TSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-
T ss_pred hHHHHHHHHHHc-----CCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEecCc-
Confidence 466677777665 36999999999977766543 32 123322222110 123479999865321
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
...++....+|+|+|.++++....
T Consensus 69 -----------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 -----------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -----------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -----------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 246677888999999999987654
No 340
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=91.27 E-value=0.63 Score=43.11 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC--CCC-CCCcccE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS--LPF-GDNYFDV 191 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~--~~~-~~~~fD~ 191 (293)
.+..+.|+|.|.|.-.-++....+.. ...++.||.|..|+.....+.....-.+.+......+.. +|. ....||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t--~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQT--KREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccc--cceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceee
Confidence 34568888887765554443333321 348999999999999888886651100111111101111 232 2455999
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHH-HHHcccCCcEEEEEcCCCchHH
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGE-MVRVLKPGGVGVVWDLLHVPEY 244 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~~~~~~~ 244 (293)
|++...+++..... ......+. +.+..++|+.++++........
T Consensus 278 vi~ah~l~~~~s~~---------~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~ 322 (491)
T KOG2539|consen 278 VICAHKLHELGSKF---------SRLDVPESLWRKTDRSGYFLVIIEKGTTMGL 322 (491)
T ss_pred EEeeeeeeccCCch---------hhhhhhHHHHHhccCCCceEEEEecCCccch
Confidence 99998888765211 22223333 3467889999999876654433
No 341
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.24 E-value=5.7 Score=35.62 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
+++||=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+.....+ .++.++.+|+.+.. . .
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFARRG--AKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45677777 56778888888887664 689999999888776666655544 34788899987632 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-+++|++|.|...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 2578999988654
No 342
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.21 E-value=0.72 Score=36.31 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=32.0
Q ss_pred EEcCCCC--hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHH--HHhcCCCCceEEEEcC
Q 022698 121 DIGCGRG--ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRT--AKMEGVQEYVTAREGD 178 (293)
Q Consensus 121 DiG~G~G--~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~--~~~~~~~~~v~~~~~d 178 (293)
|||++.| .....++.. ..+++.+++++|+++..++..+++ +..+.....+++....
T Consensus 1 DvGA~~G~~~~~~~~~~~--~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK--KCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHH--HTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHH--HcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 554444322 223357999999999999999988 5555332335555443
No 343
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.20 E-value=3.9 Score=34.88 Aligned_cols=77 Identities=22% Similarity=0.131 Sum_probs=51.6
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|-.|.++ +.++..+++.+.+.| .+|+.++.+....+.+++. .+ .++.++.+|+.+.. +
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G--~~Vi~~~r~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQG--ATVIYTYQNDRMKKSLQKL---VD--EEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCC--CEEEEecCchHHHHHHHhh---cc--CceeEEeCCCCCHHHHHHHHHHHHH
Confidence 56788888875 689999999988764 6899888775432222221 11 24778889987632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-+++|++|.|..+.
T Consensus 80 ~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 80 RVGKIDGIVHAIAYA 94 (252)
T ss_pred HhCCCCEEEEccccc
Confidence 125799999987653
No 344
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.06 E-value=0.57 Score=41.27 Aligned_cols=98 Identities=20% Similarity=0.122 Sum_probs=67.7
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
+.+|.=||.|. |..+..++.-+ +++|+-+|+|.+.++.....+. .++..+..+..++...-.+.|+||.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-----gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-----GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-----CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEE
Confidence 45677788876 66665555433 5799999999987776665543 4477777766554323356899997
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.-.+--.. .|....+++...+|||+.++=
T Consensus 238 aVLIpgak------------aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 238 AVLIPGAK------------APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEecCCC------------CceehhHHHHHhcCCCcEEEE
Confidence 53333222 677888999999999998874
No 345
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.04 E-value=5.9 Score=34.37 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=51.2
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
++.+|=.|++ ++.++..+++.+.+.| ++|+.++.++...+.+.+.....+ .. .++.+|+.+.. -
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQG--AELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCC--CEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHH
Confidence 4678888887 3678899998887764 689988988643233333323323 22 46778887642 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-+++|++|.|..+
T Consensus 80 ~~g~iDilVnnAG~ 93 (274)
T PRK08415 80 DLGKIDFIVHSVAF 93 (274)
T ss_pred HcCCCCEEEECCcc
Confidence 12679999998765
No 346
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.70 E-value=4.9 Score=34.38 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.+++.++...+.. + .++.++.+|+.+.. + .
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAAG--ARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 45777777 56778888988887764 59999999887554443322 2 34788899987632 1 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|+++.|...
T Consensus 78 ~g~id~lv~~ag~ 90 (261)
T PRK08265 78 FGRVDILVNLACT 90 (261)
T ss_pred hCCCCEEEECCCC
Confidence 1468999988654
No 347
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=90.60 E-value=9 Score=32.44 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=.| |+|.++..+++.+.+. +.+|+.++.+++.++...+..+..+ .++.++.+|+.+.. +
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGA--GAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 356788777 5777888888888765 4699999999877766555554443 34788899987532 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|.++.+...
T Consensus 85 ~~~~id~vi~~ag~ 98 (256)
T PRK06124 85 EHGRLDILVNNVGA 98 (256)
T ss_pred hcCCCCEEEECCCC
Confidence 12467999987654
No 348
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.51 E-value=0.56 Score=39.09 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=37.0
Q ss_pred ccEEEecchhhhhcc---c--c--CcchhhhHHHHHHHHHHHHHcccCCcEEEE-EcCCCch--HHHHHHHHcC-CcceE
Q 022698 189 FDVVVSAAFFHTVGK---E--Y--GHRTVEAAAERMRVLGEMVRVLKPGGVGVV-WDLLHVP--EYVRRLQELK-MEDIR 257 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~---~--~--~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~--~~~~~l~~~g-f~~~~ 257 (293)
.|+|+..|||..... . . .........-....+.++.|+|||||.+++ ++..... -...+.+..| |....
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRN 80 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheec
Confidence 488999999876553 0 0 011111122345688999999999999877 4444444 2333444557 76544
No 349
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=90.35 E-value=0.72 Score=40.51 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=48.6
Q ss_pred CCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceE----EEEcCCCCCC-----CCCCcccEEEe
Q 022698 124 CGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVT----AREGDVRSLP-----FGDNYFDVVVS 194 (293)
Q Consensus 124 ~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~----~~~~d~~~~~-----~~~~~fD~Iv~ 194 (293)
.|+|.++..|++++-+.++ .+++.+|.++..+...++.+......+++. .+.+|+.+.. +...+.|+|+-
T Consensus 5 Ga~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred ccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 4789999999999876543 689999999999998888875332222344 4478887632 44567999999
Q ss_pred cchhhhhc
Q 022698 195 AAFFHTVG 202 (293)
Q Consensus 195 ~~~~~~~~ 202 (293)
...+-|++
T Consensus 84 aAA~KhVp 91 (293)
T PF02719_consen 84 AAALKHVP 91 (293)
T ss_dssp ------HH
T ss_pred ChhcCCCC
Confidence 88887776
No 350
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.29 E-value=7 Score=32.63 Aligned_cols=116 Identities=21% Similarity=0.029 Sum_probs=67.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F----G----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~----~----- 185 (293)
+++||=.|+ +|.++..+++.+.+.| .+|++++.++...+...+..... .++.++.+|+.+.. . .
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKEG--AQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 457888887 5778888888887664 59999999988766554443332 24788899987632 0 0
Q ss_pred CCcccEEEecchhhhhccccCcchhh-----hHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVE-----AAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-++.|.++.+............+... ....+..+++.+...++++|.++++.
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 13468888775432111000000000 00011234566667778888877744
No 351
>PRK07062 short chain dehydrogenase; Provisional
Probab=90.27 E-value=9.6 Score=32.49 Aligned_cols=80 Identities=14% Similarity=-0.074 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
++++|=.|+ +|.++..+++.+.+. +++|+.++.+++.++.+.+.........++.++..|+.+.. . .
T Consensus 8 ~k~~lItGa-s~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 8 GRVAVVTGG-SSGIGLATVELLLEA--GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 457887875 566788888888765 46899999998877766555443321234778888987632 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|+++.|...
T Consensus 85 ~g~id~li~~Ag~ 97 (265)
T PRK07062 85 FGGVDMLVNNAGQ 97 (265)
T ss_pred cCCCCEEEECCCC
Confidence 2568999988654
No 352
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.21 E-value=9.9 Score=33.37 Aligned_cols=81 Identities=19% Similarity=0.063 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+++||=.| |+|.++..+++.+.+.| .+|+.++.++...+.+.+.........++.++.+|+.+.. . .
T Consensus 16 ~k~vlItG-as~gIG~~~a~~l~~~G--~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 16 GRVAVVTG-ANTGLGYETAAALAAKG--AHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 45777665 57788999999888764 5899999887766655444432211234788899987642 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 93 ~~~iD~li~nAg~~ 106 (306)
T PRK06197 93 YPRIDLLINNAGVM 106 (306)
T ss_pred CCCCCEEEECCccc
Confidence 24689999986543
No 353
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.19 E-value=1.5 Score=39.91 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-------hcCC-CCce
Q 022698 101 DMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-------MEGV-QEYV 172 (293)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-------~~~~-~~~v 172 (293)
+....+++.+. ..+.....|+|.|.|.....++.... ...-+|++++...-+.+..+.. ..|- .+.+
T Consensus 179 ~ql~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~----~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~ 253 (419)
T KOG3924|consen 179 EQLRSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAG----CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI 253 (419)
T ss_pred HHHHHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhc----cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce
Confidence 34444555553 57788999999999999988887654 2466788877765555554432 2222 2346
Q ss_pred EEEEcCCCCCC---CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 173 TAREGDVRSLP---FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 173 ~~~~~d~~~~~---~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+.++++..... .-....++|++|++...- +...-++++..-+++|-+++=..
T Consensus 254 ~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp-------------~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 254 ETIHGSFLDPKRVTEIQTEATVIFVNNVAFDP-------------ELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred eecccccCCHHHHHHHhhcceEEEEecccCCH-------------HHHHhhHHHHhhCCCcceEeccc
Confidence 77777776522 112457999998765322 33334457888899999887533
No 354
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.19 E-value=7.7 Score=32.96 Aligned_cols=78 Identities=24% Similarity=0.101 Sum_probs=56.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.++..++...+.....+ .++.++.+|+.+.. . .
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAG--ARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788888 67889999999987764 589999999877766655544433 34778899987632 1 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.++.|.|+.+...
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1468999988654
No 355
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.07 E-value=3 Score=38.23 Aligned_cols=74 Identities=26% Similarity=0.196 Sum_probs=52.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C--CCCcccEEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F--GDNYFDVVV 193 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~~fD~Iv 193 (293)
.+||=||| |.++...+..+.+.+ ..+|+..|.|.+.++.+..... .+++..+.|+.+.+ . .-..+|+|+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEE
Confidence 47899999 777877887776654 2699999999886665554422 25889999998753 1 113469999
Q ss_pred ecchh
Q 022698 194 SAAFF 198 (293)
Q Consensus 194 ~~~~~ 198 (293)
+..|.
T Consensus 74 n~~p~ 78 (389)
T COG1748 74 NAAPP 78 (389)
T ss_pred EeCCc
Confidence 87554
No 356
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.94 E-value=2.2 Score=37.96 Aligned_cols=93 Identities=25% Similarity=0.266 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC---CCCCCCCCCcc
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD---VRSLPFGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~f 189 (293)
++.+||-.|+|. |..+..+++.. +. ++++++.++...+.+++. +.. .++..+ ........+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-----G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-----GAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCCc
Confidence 677888887654 44444444443 34 789999988876654432 321 122111 11111122358
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|+|+..... ...++.+.+.|+++|+++.+.
T Consensus 233 d~vld~~g~------------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASGA------------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCCC------------------HHHHHHHHHHHhcCCEEEEEe
Confidence 999864221 124567788999999998764
No 357
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.81 E-value=8 Score=33.44 Aligned_cols=79 Identities=20% Similarity=0.113 Sum_probs=51.1
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++.+|=.|+++ +.++..+++.+.+.| ++|+.++.++...+..++.....+. ..++.+|+.+.. +
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~G--a~V~~~~r~~~~~~~~~~~~~~~g~---~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQG--AELAFTYQGEALGKRVKPLAESLGS---DFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCC--CEEEEecCchHHHHHHHHHHHhcCC---ceEEeCCCCCHHHHHHHHHHHHH
Confidence 46788899876 478888888887764 6888888775433333333222221 246788887632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|....
T Consensus 82 ~~g~iD~lVnnAG~~ 96 (271)
T PRK06505 82 KWGKLDFVVHAIGFS 96 (271)
T ss_pred HhCCCCEEEECCccC
Confidence 126799999886543
No 358
>PRK07063 short chain dehydrogenase; Provisional
Probab=89.81 E-value=11 Score=32.00 Aligned_cols=80 Identities=23% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.....+...++.++.+|+.+.. + .
T Consensus 7 ~k~vlVtGa-s~gIG~~~a~~l~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 7 GKVALVTGA-AQGIGAAIARAFAREG--AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467887776 5678888888887764 6899999998877766665554222245788899987632 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.+|.|...
T Consensus 84 ~g~id~li~~ag~ 96 (260)
T PRK07063 84 FGPLDVLVNNAGI 96 (260)
T ss_pred hCCCcEEEECCCc
Confidence 1468999988654
No 359
>PRK09242 tropinone reductase; Provisional
Probab=89.80 E-value=11 Score=31.86 Aligned_cols=80 Identities=19% Similarity=0.041 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.........++.++.+|+.+.. + .
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGLG--ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457887876 5678888888887664 5899999988877766655544311235788899987531 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.|+.+...
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 2568999988654
No 360
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=89.78 E-value=2.7 Score=35.52 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=65.6
Q ss_pred cCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEEcCCCCCC-----C-----CC-Ccc
Q 022698 123 GCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAREGDVRSLP-----F-----GD-NYF 189 (293)
Q Consensus 123 G~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~-----~-----~~-~~f 189 (293)
|+| ++.++..+++.+.+. +++|+.++.+++.++...+.+.. .+ .+++.+|+.+.. + .. ++.
T Consensus 1 g~~~s~GiG~aia~~l~~~--Ga~V~~~~~~~~~~~~~~~~l~~~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~g~i 74 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEE--GANVILTDRNEEKLADALEELAKEYG----AEVIQCDLSDEESVEALFDEAVERFGGRI 74 (241)
T ss_dssp STSSTSHHHHHHHHHHHHT--TEEEEEEESSHHHHHHHHHHHHHHTT----SEEEESCTTSHHHHHHHHHHHHHHHCSSE
T ss_pred CCCCCCChHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHHHcC----CceEeecCcchHHHHHHHHHHHhhcCCCe
Confidence 555 577888888888776 47999999999976544444433 33 236889987532 0 12 789
Q ss_pred cEEEecchhhhhc--cccCcchhhhHHHH-----------HHHHHHHHHcccCCcEEEEEc
Q 022698 190 DVVVSAAFFHTVG--KEYGHRTVEAAAER-----------MRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 190 D~Iv~~~~~~~~~--~~~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~~~~ 237 (293)
|++|.|....... ..+..+ .+.++. ..+.+.+.+.++++|.++++.
T Consensus 75 D~lV~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 75 DILVNNAGISPPSNVEKPLLD--LSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp SEEEEEEESCTGGGTSSSGGG--SHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecccccccccCCCChHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 9999875543321 011011 011121 235566667888999887753
No 361
>PRK06701 short chain dehydrogenase; Provisional
Probab=89.69 E-value=9 Score=33.47 Aligned_cols=117 Identities=20% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH-HHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR-TTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.++. ..+......+..+ .++.++.+|+.+.. +.
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G--~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEG--ADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCC--CEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 457887774 6778888888887664 68888887753 2333333333333 34788899987632 10
Q ss_pred -CCcccEEEecchhhhhccc---cCcchh-----hhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 -DNYFDVVVSAAFFHTVGKE---YGHRTV-----EAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~~---~~~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-+++|+||.+......... ...+.+ .....+..+++.+.+.++++|.++++.
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1468999987554221100 000000 000122345566666677778777643
No 362
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.62 E-value=9.2 Score=33.06 Aligned_cols=79 Identities=19% Similarity=0.064 Sum_probs=50.6
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
++++|=.|++ ++.++..+++.+.+.| ++|+.++.++...+.+++..+..+ ....+.+|+.+.. .
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G--~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAG--AELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCC--CEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHH
Confidence 4578888887 5789999999988764 588877765432333333333322 2456788886532 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|++|.|..+.
T Consensus 85 ~~g~iD~lv~nAG~~ 99 (272)
T PRK08159 85 KWGKLDFVVHAIGFS 99 (272)
T ss_pred hcCCCcEEEECCccc
Confidence 125789999986543
No 363
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.52 E-value=0.23 Score=39.32 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=34.1
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.++||.+.|...++|..--.--++..+. ...+.+.++.++|||||.|++.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~-Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPI-GDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred hccchhhheechhccccccccCCCCCcc-ccHHHHHHHHHhhccCCeEEEE
Confidence 4679999999888776532111222222 2246778899999999999983
No 364
>PRK08251 short chain dehydrogenase; Provisional
Probab=89.50 E-value=12 Score=31.53 Aligned_cols=79 Identities=15% Similarity=-0.006 Sum_probs=55.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~ 186 (293)
+++|=.| |+|.++..+++++.+.| .+|+.++.++..++.............++.++.+|+.+.. . ..
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKG--RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4677677 57889999999987764 5899999998877666554443221235888999988642 0 12
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|.|+.+..+
T Consensus 80 ~~id~vi~~ag~ 91 (248)
T PRK08251 80 GGLDRVIVNAGI 91 (248)
T ss_pred CCCCEEEECCCc
Confidence 468999988654
No 365
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.42 E-value=5.5 Score=34.02 Aligned_cols=77 Identities=23% Similarity=0.075 Sum_probs=51.4
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C---
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKK--RTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F--- 184 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~--~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~--- 184 (293)
++++|=.|+| ++.++..+++.+.+.| .+|+.++.+. +.++...+. .+ .++.++.+|+.+.. .
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G--~~v~l~~r~~~~~~~~~~~~~---~~--~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQG--AEVVLTGFGRALRLTERIAKR---LP--EPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCC--CEEEEecCccchhHHHHHHHh---cC--CCCcEEeCCCCCHHHHHHHHHHH
Confidence 4689999986 7889999999888764 6888888764 333332222 11 23667888987632 0
Q ss_pred --CCCcccEEEecchhh
Q 022698 185 --GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~~ 199 (293)
.-+++|++|.|..+.
T Consensus 80 ~~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 80 REHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHHcCCCcEEEEccccc
Confidence 126799999986543
No 366
>PRK08267 short chain dehydrogenase; Provisional
Probab=89.27 E-value=8.7 Score=32.65 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=52.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC------C
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG------D 186 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~------~ 186 (293)
++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+... ..++.++.+|+.+.. +. .
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEG--WRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5677764 5788888888887664 699999999887665544332 134889999997632 00 3
Q ss_pred CcccEEEecchhh
Q 022698 187 NYFDVVVSAAFFH 199 (293)
Q Consensus 187 ~~fD~Iv~~~~~~ 199 (293)
+++|.|+.+....
T Consensus 76 ~~id~vi~~ag~~ 88 (260)
T PRK08267 76 GRLDVLFNNAGIL 88 (260)
T ss_pred CCCCEEEECCCCC
Confidence 5689999886543
No 367
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.26 E-value=9.8 Score=32.56 Aligned_cols=78 Identities=22% Similarity=0.103 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCC-hHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRG-ILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G-~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++.+|=.|+++| .++..+++.+.+.| ++|+.++.++...+.+++.....+. ..++.+|+.+.. +
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G--~~v~~~~r~~~~~~~~~~l~~~~g~---~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHG--AELWFTYQSEVLEKRVKPLAEEIGC---NFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcC--CEEEEEeCchHHHHHHHHHHHhcCC---ceEEEccCCCHHHHHHHHHHHHH
Confidence 457888888775 58888888877654 5888888775332233333222221 235678887632 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|..+
T Consensus 83 ~~g~iDilVnnag~ 96 (260)
T PRK06603 83 KWGSFDFLLHGMAF 96 (260)
T ss_pred HcCCccEEEEcccc
Confidence 12679999987654
No 368
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.25 E-value=9 Score=32.45 Aligned_cols=79 Identities=19% Similarity=0.056 Sum_probs=55.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.....+ .++.++.+|+.+.. + .
T Consensus 9 ~k~vlVtGa-s~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 9 GKRALITGA-STGIGKRVALAYVEAG--AQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567888886 5567888888887764 589999999887776665554443 34778889987632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|+++.|....
T Consensus 84 ~g~id~lv~~ag~~ 97 (253)
T PRK05867 84 LGGIDIAVCNAGII 97 (253)
T ss_pred hCCCCEEEECCCCC
Confidence 15789999886543
No 369
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=89.24 E-value=9 Score=29.91 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=54.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC--HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------CC
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK--KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------FG 185 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis--~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 185 (293)
++|=.|+ +|.++..+++.+-+.| +.+++.+..+ .+..+......+..+ .++.+..+|+.+.. ..
T Consensus 2 ~~lItGa-~~giG~~~a~~l~~~g-~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGA-SSGIGRALARALARRG-ARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECC-CCHHHHHHHHHHHhcC-ceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccc
Confidence 4555665 5778899998887764 4688888888 555555555555544 56899999987632 12
Q ss_pred CCcccEEEecchhhh
Q 022698 186 DNYFDVVVSAAFFHT 200 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~ 200 (293)
.++.|++++|.....
T Consensus 78 ~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 78 FGPLDILINNAGIFS 92 (167)
T ss_dssp HSSESEEEEECSCTT
T ss_pred ccccccccccccccc
Confidence 367999999866544
No 370
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.14 E-value=1.9 Score=38.84 Aligned_cols=98 Identities=19% Similarity=0.135 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeC---CHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCccc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDC---KKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFD 190 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDi---s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 190 (293)
.++.+||=+|+| .++...++..... ++++++++. ++..++.+++ .|.. .+.....+..+ ....+.+|
T Consensus 171 ~~g~~vlI~G~G--~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~-~~~~~~~d 240 (355)
T cd08230 171 WNPRRALVLGAG--PIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAE-VKLVGEFD 240 (355)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhh-hhhcCCCC
Confidence 356789888864 4544444333333 358999987 5665555443 3421 11111111111 01124589
Q ss_pred EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 191 VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 191 ~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
+|+-... . ...+....+.|++||.++++...
T Consensus 241 ~vid~~g-----------------~-~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 241 LIIEATG-----------------V-PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred EEEECcC-----------------C-HHHHHHHHHHccCCcEEEEEecC
Confidence 8886421 0 13566778899999999886643
No 371
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.99 E-value=7.3 Score=32.77 Aligned_cols=116 Identities=16% Similarity=0.034 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH-HHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR-TTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|-.|+ +|.++..+++.+.+.| .+|++++.+.. ..+......+..+ .++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G--~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAG--AHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCC--CEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 457888875 5678888888887654 58888877542 3333333333322 34778889987632 00
Q ss_pred -CCcccEEEecchhhhhcc-ccCcchhhhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 186 -DNYFDVVVSAAFFHTVGK-EYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
-+..|+|+.+........ .+.............+++.+.+.++.+|.++++
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 135899887754321110 000000011113445677777777767777664
No 372
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.98 E-value=2.2 Score=35.74 Aligned_cols=74 Identities=22% Similarity=0.184 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 183 (293)
..+.||-.||.+|.++.++++++.+.| ..|+++-.+-+-..... ...| +.....|+.+..
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G--~~V~AtaR~~e~M~~L~---~~~g----l~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNG--YLVYATARRLEPMAQLA---IQFG----LKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCC--eEEEEEccccchHhhHH---HhhC----CeeEEeccCChHHHHHHHHHHhh
Confidence 456899999999999999999998764 69999876654332222 1223 445566665421
Q ss_pred CCCCcccEEEecch
Q 022698 184 FGDNYFDVVVSAAF 197 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~ 197 (293)
+++++.|+.+.|..
T Consensus 77 ~~~Gkld~L~NNAG 90 (289)
T KOG1209|consen 77 NPDGKLDLLYNNAG 90 (289)
T ss_pred CCCCceEEEEcCCC
Confidence 35789999997744
No 373
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.95 E-value=1.3 Score=40.21 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=69.2
Q ss_pred HHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC
Q 022698 103 AQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL 182 (293)
Q Consensus 103 ~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 182 (293)
+.++..++....++.+|+|.+|-.|.-+.+++..+.+. .++.|+|.+....+..++.....|... +....+|+...
T Consensus 201 asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~---gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t 276 (413)
T KOG2360|consen 201 ASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQ---GKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNT 276 (413)
T ss_pred hhcchhhhcCCCCCCceeeeccccccchhhHHHHhhcc---CCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccCC
Confidence 33445555555677899999999999999999888754 499999999999999999988888743 56668888764
Q ss_pred CCC--CCcccEEEecchh
Q 022698 183 PFG--DNYFDVVVSAAFF 198 (293)
Q Consensus 183 ~~~--~~~fD~Iv~~~~~ 198 (293)
+.+ =.....|++.|..
T Consensus 277 ~~~~~~~~v~~iL~Dpsc 294 (413)
T KOG2360|consen 277 ATPEKFRDVTYILVDPSC 294 (413)
T ss_pred CCcccccceeEEEeCCCC
Confidence 321 1346677776664
No 374
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=88.80 E-value=13 Score=31.34 Aligned_cols=78 Identities=18% Similarity=0.089 Sum_probs=54.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+++.++.++..++.........+ .++.++.+|+.+.. + .
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G--~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYG--AEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKD 83 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 45677777 56788888988887664 699999999877666555544433 34677888887632 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.+++|.|+.+...
T Consensus 84 ~~~id~vi~~ag~ 96 (254)
T PRK08085 84 IGPIDVLINNAGI 96 (254)
T ss_pred cCCCCEEEECCCc
Confidence 2568999998654
No 375
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=88.78 E-value=2.1 Score=37.45 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=68.3
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-cCCCCCCCCCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE-GDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~Iv~~~ 196 (293)
+|+=+| .|.++..+++.+...|....+++.|.+...++.+. ..++. ... .+... ......|+|+..-
T Consensus 5 ~v~IvG--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~----~lgv~----d~~~~~~~~--~~~~~aD~Vivav 72 (279)
T COG0287 5 KVGIVG--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL----ELGVI----DELTVAGLA--EAAAEADLVIVAV 72 (279)
T ss_pred EEEEEC--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh----hcCcc----cccccchhh--hhcccCCEEEEec
Confidence 566666 67788888888888777678899999887554443 23321 111 11111 1234589999886
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCc
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKME 254 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~ 254 (293)
|... ...+++++...|++|..+.=+... -....+.+++.+-.
T Consensus 73 Pi~~---------------~~~~l~~l~~~l~~g~iv~Dv~S~-K~~v~~a~~~~~~~ 114 (279)
T COG0287 73 PIEA---------------TEEVLKELAPHLKKGAIVTDVGSV-KSSVVEAMEKYLPG 114 (279)
T ss_pred cHHH---------------HHHHHHHhcccCCCCCEEEecccc-cHHHHHHHHHhccC
Confidence 6653 457888888899998776432221 23466666666544
No 376
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.76 E-value=12 Score=32.35 Aligned_cols=79 Identities=28% Similarity=0.146 Sum_probs=54.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+...| .+|+.+|.++..++...+..+..+ .++.++.+|+.+.. . .
T Consensus 6 ~k~vlVTGa-s~gIG~ala~~La~~G--~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 6 GRGAVITGG-ASGIGLATGTEFARRG--ARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 456776665 5778888988887764 589999999887766555544433 34788889987632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|..+.
T Consensus 81 ~g~id~li~nAg~~ 94 (275)
T PRK05876 81 LGHVDVVFSNAGIV 94 (275)
T ss_pred cCCCCEEEECCCcC
Confidence 24689999887653
No 377
>PRK12939 short chain dehydrogenase; Provisional
Probab=88.74 E-value=6.7 Score=32.93 Aligned_cols=78 Identities=22% Similarity=0.103 Sum_probs=53.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.| |+|.++..+++.+.+.| .++++++.+++.++...+..+..+ .++.++.+|+.+.. +.
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAG--ATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46788666 57889999998887664 589999988876665555444333 34888899987632 11
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.|+.+...
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1468999987543
No 378
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.71 E-value=5.2 Score=35.79 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=54.3
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-------hcCCC-----CceEEEEcCCCCCCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-------MEGVQ-----EYVTAREGDVRSLPF 184 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-------~~~~~-----~~v~~~~~d~~~~~~ 184 (293)
.+|-=||+| .++..++..+... +.+|+..|++++.++.+++... ..+.. .++.+. .|..+
T Consensus 8 ~~VaVIGaG--~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--- 79 (321)
T PRK07066 8 KTFAAIGSG--VIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--- 79 (321)
T ss_pred CEEEEECcC--HHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---
Confidence 467777765 4555555555443 4699999999998876655432 11111 112221 12111
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
.-...|+|+-+-+- .. +-...+++++.+.++|+.+|.
T Consensus 80 av~~aDlViEavpE-~l------------~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 80 CVADADFIQESAPE-RE------------ALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred HhcCCCEEEECCcC-CH------------HHHHHHHHHHHHhCCCCeEEE
Confidence 11346888876321 11 134567788888888877444
No 379
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=88.70 E-value=6.7 Score=33.57 Aligned_cols=79 Identities=18% Similarity=0.079 Sum_probs=48.8
Q ss_pred CCeEEEEcCC-CChHHHHHHHHhhhcCCCcEEEEEeCCHH--HHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C---
Q 022698 116 VKTALDIGCG-RGILLNAVATQFKKTGSLGRVVGLDCKKR--TTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F--- 184 (293)
Q Consensus 116 ~~~vLDiG~G-~G~~~~~l~~~~~~~~~~~~v~~vDis~~--~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~--- 184 (293)
++++|=.|++ ++.++..+++.+.+.| .+|+.++.+.+ ..+...+.....+ .++.++..|+.+.. +
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G--~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAG--AELGITYLPDEKGRFEKKVRELTEPL--NPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCC--CEEEEEecCcccchHHHHHHHHHhcc--CcceEeecCcCCHHHHHHHHHHH
Confidence 4678999985 6889999999988764 57777654432 1111111222222 23567788887632 0
Q ss_pred --CCCcccEEEecchh
Q 022698 185 --GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~ 198 (293)
.-++.|++|.|..+
T Consensus 82 ~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 82 KQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHcCCCCEEEEcccc
Confidence 12579999988764
No 380
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=88.66 E-value=0.89 Score=43.58 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----C----C
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----P----F 184 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~----~ 184 (293)
+.+...|||+||..|.+....++.+|. ++-|+|+|+-|-- ..+++.-++.|+..- + .
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv---~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l 106 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPV---GSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKIL 106 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCC---CceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHH
Confidence 356678999999999999988888874 5699999997630 112244444444321 1 1
Q ss_pred CCCcccEEEecchh----hhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEE
Q 022698 185 GDNYFDVVVSAAFF----HTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGV 234 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 234 (293)
...+.|+|+....- .|.. +.+....-....++-+...|+.||.++
T Consensus 107 ~t~~advVLhDgapnVg~~w~~-----DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 107 KTWKADVVLHDGAPNVGGNWVQ-----DAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred HhCCCcEEeecCCCccchhHHH-----HHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 23456888864321 1221 001101111235566667899999944
No 381
>PRK06194 hypothetical protein; Provisional
Probab=88.65 E-value=9.5 Score=32.98 Aligned_cols=79 Identities=16% Similarity=0.041 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
+.++|=.| |+|.++..+++.+.+.| .+|+.+|.++..++...+.....+ .++.++.+|+.+.. . .
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALG--MKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45788555 66888999998887664 689999998876665544444333 34788899987632 0 0
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|+|+.+....
T Consensus 81 ~g~id~vi~~Ag~~ 94 (287)
T PRK06194 81 FGAVHLLFNNAGVG 94 (287)
T ss_pred cCCCCEEEECCCCC
Confidence 14579999886653
No 382
>PRK10458 DNA cytosine methylase; Provisional
Probab=88.57 E-value=3 Score=39.36 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-----------
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----------- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 184 (293)
..+++|+.||.|.+...+-.. | ...+.++|+++.+.+.-+.|.... +.......|+.++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a----G-~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~ 159 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI----G-GQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEA 159 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc----C-CEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhh
Confidence 458999999999998877543 2 247789999999888777774211 112344556555421
Q ss_pred ------CCCcccEEEecchhhhhc
Q 022698 185 ------GDNYFDVVVSAAFFHTVG 202 (293)
Q Consensus 185 ------~~~~fD~Iv~~~~~~~~~ 202 (293)
.-..+|+++..+|...+.
T Consensus 160 ~~~~~~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 160 AEHIRQHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred hhhhhccCCCCCEEEEcCCCCccc
Confidence 012589999998876554
No 383
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.53 E-value=1.3 Score=35.29 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=60.9
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchh
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFF 198 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~ 198 (293)
|-=||+ |..+..+++.+.+.| .+|++.|.+++..+...+. + +.. ..+..+. -...|+|++.-+-
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~~~----g----~~~-~~s~~e~---~~~~dvvi~~v~~ 67 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAG--YEVTVYDRSPEKAEALAEA----G----AEV-ADSPAEA---AEQADVVILCVPD 67 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTT--TEEEEEESSHHHHHHHHHT----T----EEE-ESSHHHH---HHHBSEEEE-SSS
T ss_pred EEEEch--HHHHHHHHHHHHhcC--CeEEeeccchhhhhhhHHh----h----hhh-hhhhhhH---hhcccceEeeccc
Confidence 444554 778888888887654 5999999999865544433 2 222 2222222 1235999876331
Q ss_pred hhhccccCcchhhhHHHHHHHHHH--HHHcccCCcEEEEEcCCCch---HHHHHHHHcCCcce
Q 022698 199 HTVGKEYGHRTVEAAAERMRVLGE--MVRVLKPGGVGVVWDLLHVP---EYVRRLQELKMEDI 256 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~~---~~~~~l~~~gf~~~ 256 (293)
.+....++.. +...|++|..++-.+....+ +..+.+.+.|...+
T Consensus 68 --------------~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 68 --------------DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp --------------HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred --------------chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 1244566676 77888887777664444333 45556666774433
No 384
>PRK06128 oxidoreductase; Provisional
Probab=88.47 E-value=11 Score=33.12 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH--HHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR--TTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~--~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+..+.. ..+...+.....+ .++.++.+|+.+.. +
T Consensus 55 ~k~vlITG-as~gIG~~~a~~l~~~G--~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 55 GRKALITG-ADSGIGRATAIAFAREG--ADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred CCEEEEec-CCCcHHHHHHHHHHHcC--CEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 45788888 57778889998887764 57777765433 2222333333333 34778889987632 1
Q ss_pred -CCCcccEEEecchhhhhcccc---Ccchhhh-----HHHHHHHHHHHHHcccCCcEEEEE
Q 022698 185 -GDNYFDVVVSAAFFHTVGKEY---GHRTVEA-----AAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~~~~~~~---~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
.-++.|++|.|.......... ..+.... ......+++.+.+.++++|.++++
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 114689999886543211000 0000000 001123556666777888887774
No 385
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.40 E-value=5.5 Score=35.72 Aligned_cols=96 Identities=13% Similarity=0.017 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.++.+||=+||| .++..+.+.......+.+++++|.++..++.+++ .+. ... .+ ++. ....+|+|+
T Consensus 162 ~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~--~~--~~~-~~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYL--ID--DIP-EDLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eee--hh--hhh-hccCCcEEE
Confidence 467899989874 4554433322211113589999999987777653 221 111 11 111 112489888
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
-.-.-. .....+....+.|++||+++++..
T Consensus 228 D~~G~~---------------~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 ECVGGR---------------GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ECCCCC---------------ccHHHHHHHHHhCcCCcEEEEEee
Confidence 532200 012456777889999999988654
No 386
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.34 E-value=13 Score=31.97 Aligned_cols=79 Identities=16% Similarity=0.011 Sum_probs=50.5
Q ss_pred CCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+++ +.++..+++.+.+.| .+|+.++.+....+.+.+..... +.+.++.+|+.+.. +
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G--~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREG--AELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCC--CEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHh
Confidence 46788889887 488888888887764 58888887743222232222221 22567788987632 0
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-+++|++|.|..+.
T Consensus 81 ~~g~iD~linnAg~~ 95 (262)
T PRK07984 81 VWPKFDGFVHSIGFA 95 (262)
T ss_pred hcCCCCEEEECCccC
Confidence 125689999987653
No 387
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.17 E-value=11 Score=29.35 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|+-+|+ |.++..++..+...+ ..+++.+|.+++..+...+...... +.....|..+. -...|+|++
T Consensus 18 ~~~~i~iiG~--G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~Dvvi~ 87 (155)
T cd01065 18 KGKKVLILGA--GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL---LAEADLIIN 87 (155)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc---cccCCEEEe
Confidence 4578999988 567777877776543 3589999999876655444332211 11122232221 246899998
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC-chHHHHHHHHcCCcce
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH-VPEYVRRLQELKMEDI 256 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~l~~~gf~~~ 256 (293)
.-+....+.+.. .+ . ...+++|..++-+.... ..++.+.+++.|...+
T Consensus 88 ~~~~~~~~~~~~--~~----~--------~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v 136 (155)
T cd01065 88 TTPVGMKPGDEL--PL----P--------PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTI 136 (155)
T ss_pred CcCCCCCCCCCC--CC----C--------HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCcee
Confidence 755443210000 00 0 11256766555443321 1267777888886544
No 388
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.15 E-value=2.2 Score=37.64 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 115 TVKTALDIGCGR-GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~-G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
++.++|=+|||. |..+..+++.. | ...+.++|.++..++.+.+. . + .|..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~---G-~~~v~~~~~~~~rl~~a~~~----~------~--i~~~~~--~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA---G-GSPPAVWETNPRRRDGATGY----E------V--LDPEKD--PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc---C-CceEEEeCCCHHHHHhhhhc----c------c--cChhhc--cCCCCCEEE
Confidence 456788887653 33444444433 2 23577889888766555421 1 1 111110 123589988
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
-.-.- ...+..+.+.|+++|+++++...
T Consensus 206 d~~G~------------------~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 206 DASGD------------------PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred ECCCC------------------HHHHHHHHHhhhcCcEEEEEeec
Confidence 64221 13456677899999999986643
No 389
>PRK07904 short chain dehydrogenase; Provisional
Probab=88.08 E-value=5.1 Score=34.20 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHH-HHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRT-TLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~-l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
.+.+||=.|+ +|.++..+++++.+.+ +.+|+.++.+++. ++.+.+.....+ ..++.++.+|+.+.. .
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 4557888887 6778888998876653 3689999988764 555544444433 135889999987532 1
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
..+..|+++.+...
T Consensus 84 ~~g~id~li~~ag~ 97 (253)
T PRK07904 84 AGGDVDVAIVAFGL 97 (253)
T ss_pred hcCCCCEEEEeeec
Confidence 12579988876543
No 390
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.02 E-value=6.3 Score=36.71 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|+=+|+|. ++..++..+... +.+|+.+|+++.....+. ..|. .+ .++.+. ....|+|+.
T Consensus 211 ~Gk~VlViG~G~--IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~----~~G~----~v--~~l~ea---l~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGD--VGKGCAQRLRGL--GARVIVTEVDPICALQAA----MDGF----RV--MTMEEA---AELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhC--CCEEEEEcCCchhhHHHH----hcCC----Ee--cCHHHH---HhCCCEEEE
Confidence 577999999864 666666665544 469999999986433222 1231 21 122221 135899987
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHH-HHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcceEEeeeecc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLG-EMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDIRVSERVTA 264 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 264 (293)
... .. ..+. .....+|+|++++.+.....+--...|.+.+.+..++...+..
T Consensus 274 aTG-----------------~~-~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~ 326 (425)
T PRK05476 274 ATG-----------------NK-DVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDE 326 (425)
T ss_pred CCC-----------------CH-HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceE
Confidence 521 11 2333 5677899999999887766554444555555444444444433
No 391
>PRK08324 short chain dehydrogenase; Validated
Probab=87.89 E-value=5.5 Score=39.58 Aligned_cols=77 Identities=25% Similarity=0.165 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+++|.++..++.+.+..... .++.++.+|+.+.. + .
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~~G--a~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAAEG--ACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCc--CEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456776664 6778888888887664 58999999998766555443322 34788889987532 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.+.+|+|+.+...
T Consensus 496 ~g~iDvvI~~AG~ 508 (681)
T PRK08324 496 FGGVDIVVSNAGI 508 (681)
T ss_pred cCCCCEEEECCCC
Confidence 2468999988654
No 392
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.87 E-value=13 Score=31.49 Aligned_cols=78 Identities=18% Similarity=0.081 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC----------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF----------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 185 (293)
++++|=. .|+|.++..+++.+.+.| .+|+.++.++...+.+.+.....+ .++.++.+|+.+... .
T Consensus 7 ~~~vlIt-Gasg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 7 GKTAVVT-GAASGIGKEIALELARAG--AAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCEEEEE-CCCChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567744 567889999999887764 589999999977766665554443 347888999876320 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.++.|+|+.+...
T Consensus 82 ~~~~d~vi~~ag~ 94 (262)
T PRK13394 82 FGSVDILVSNAGI 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 1458999987654
No 393
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=87.52 E-value=15 Score=31.19 Aligned_cols=75 Identities=25% Similarity=0.161 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.+...++...+.. + .++.++.+|+.+.. + .
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEG--ARVVIADIKPARARLAALEI---G--PAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHHh---C--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45677676 67788999999987764 69999999887665443322 1 34778888987532 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|+++.+...
T Consensus 78 ~~~id~li~~ag~ 90 (257)
T PRK07067 78 FGGIDILFNNAAL 90 (257)
T ss_pred cCCCCEEEECCCc
Confidence 1468999987554
No 394
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.52 E-value=7.7 Score=34.62 Aligned_cols=94 Identities=15% Similarity=0.002 Sum_probs=54.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccE
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDV 191 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 191 (293)
...++.+||=.|+| .++..+.+..... ++++++++.+++.++.+++ .|.. .++ |..+. ..+.+|+
T Consensus 162 ~~~~g~~VlV~G~g--~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~---~vi--~~~~~--~~~~~d~ 226 (329)
T TIGR02822 162 SLPPGGRLGLYGFG--GSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAA---SAG--GAYDT--PPEPLDA 226 (329)
T ss_pred CCCCCCEEEEEcCC--HHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCc---eec--ccccc--CcccceE
Confidence 35677899999874 3443333322222 4689999999887665554 3432 111 11111 1235787
Q ss_pred EEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 192 VVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 192 Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
++.... . ...+....+.|++||+++++..
T Consensus 227 ~i~~~~-----------------~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAP-----------------A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCC-----------------c-HHHHHHHHHhhCCCcEEEEEec
Confidence 654221 1 1356777889999999988664
No 395
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=87.49 E-value=16 Score=33.50 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=70.1
Q ss_pred HHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcC---CCcEEEEEeC----CHHHHHHHHHH----HHhcCCCCceE
Q 022698 105 RMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTG---SLGRVVGLDC----KKRTTLSTLRT----AKMEGVQEYVT 173 (293)
Q Consensus 105 ~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~---~~~~v~~vDi----s~~~l~~a~~~----~~~~~~~~~v~ 173 (293)
.+++.+.. ...-+|+|+|.|.|.-=..|.+.+..+. +.-++|+++. +...++.+.++ ++..|+. .+
T Consensus 101 aIleA~~g-~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fe 177 (374)
T PF03514_consen 101 AILEAFEG-ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FE 177 (374)
T ss_pred HHHHHhcc-CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EE
Confidence 45555543 3456899999999998888888776542 3469999999 77777766665 3445654 55
Q ss_pred EEEc---CCCCCC---CCCCcccEEEec--chhhhhccccCcchhhhHHHH-HHHHHHHHHcccCCcEEEE
Q 022698 174 AREG---DVRSLP---FGDNYFDVVVSA--AFFHTVGKEYGHRTVEAAAER-MRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 174 ~~~~---d~~~~~---~~~~~fD~Iv~~--~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~~ 235 (293)
|... ++.++. +.-.+=+.++.| .-+|++..+.... .++ ..+++ ..+.|+|.-.+++
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~-----~~~~~~~L~-~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGAL-----ENPRDAFLR-VIRSLNPKVVVLV 242 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccc-----cchHHHHHH-HHHhcCCCEEEEE
Confidence 5553 333321 111112344444 4456665222111 122 34554 4457899866555
No 396
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=87.41 E-value=9.6 Score=33.70 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CC--CCcccEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FG--DNYFDVV 192 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~~fD~I 192 (293)
+++||=.| |+|.++..+++.+.+.| .+|+++..++.............+...++.++.+|+.+.. .. -...|+|
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRG--YTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCC--CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 46788777 68999999999887664 5787777665533322222221222245888999988743 10 1247998
Q ss_pred Eecchh
Q 022698 193 VSAAFF 198 (293)
Q Consensus 193 v~~~~~ 198 (293)
+.+...
T Consensus 82 ih~A~~ 87 (325)
T PLN02989 82 FHTASP 87 (325)
T ss_pred EEeCCC
Confidence 887653
No 397
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=87.23 E-value=0.4 Score=41.02 Aligned_cols=115 Identities=18% Similarity=0.301 Sum_probs=64.6
Q ss_pred EEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-----CCCCCCcccEEEe
Q 022698 120 LDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-----LPFGDNYFDVVVS 194 (293)
Q Consensus 120 LDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~fD~Iv~ 194 (293)
|..-.||=.++..+++. .-+.+.+|+.+...+..++++... .++++...|..+ +| +..+=-+|+.
T Consensus 62 l~~YPGSP~ia~~llR~------qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allP-P~~rRglVLI 131 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE------QDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLP-PPERRGLVLI 131 (245)
T ss_dssp --EEE-HHHHHHHHS-T------TSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S--TTS-EEEEE
T ss_pred cCcCCCCHHHHHHhCCc------cceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCC-CCCCCeEEEE
Confidence 67888888887777654 248999999999988888776653 569999999865 23 3445679999
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHccc--CCcEEEEEcCC-C---chHHHHHHHHcCCcce
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLK--PGGVGVVWDLL-H---VPEYVRRLQELKMEDI 256 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~-~---~~~~~~~l~~~gf~~~ 256 (293)
.|+|..-. +..++.+.+...+| |.|+++++-.. . ...+.+.+++.|...+
T Consensus 132 DPpYE~~~------------dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~ 187 (245)
T PF04378_consen 132 DPPYEQKD------------DYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKV 187 (245)
T ss_dssp -----STT------------HHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-
T ss_pred CCCCCCch------------HHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCe
Confidence 99998765 66666666665555 57877774432 2 2345566666666543
No 398
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.19 E-value=5.2 Score=37.00 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=58.7
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+.+.......+.+|+=+|+|. ++..+++.+... +++|+++|.++.....+. ..|. .+ .+..+
T Consensus 181 ~~~~i~r~t~~~l~Gk~VvViG~G~--IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~----~~G~----~v--~~lee 246 (406)
T TIGR00936 181 TIDGILRATNLLIAGKTVVVAGYGW--CGKGIAMRARGM--GARVIVTEVDPIRALEAA----MDGF----RV--MTMEE 246 (406)
T ss_pred HHHHHHHhcCCCCCcCEEEEECCCH--HHHHHHHHHhhC--cCEEEEEeCChhhHHHHH----hcCC----Ee--CCHHH
Confidence 3444444332224577999999877 444455444433 469999999886432222 2232 22 12222
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHH-HHHHHcccCCcEEEEEcCCC
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVL-GEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~ 240 (293)
. . ...|+|++... . ...+ .+....+|+|++++.+....
T Consensus 247 a-l--~~aDVVItaTG-----------------~-~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 247 A-A--KIGDIFITATG-----------------N-KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred H-H--hcCCEEEECCC-----------------C-HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 1 1 34699887432 1 1233 34667899999999876654
No 399
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.87 E-value=5.5 Score=35.24 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=54.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
.+|.=||+| .++..++..+...|...+|+++|.+++.++.+++ .+.. .. ...+..+. -...|+|+..-
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~--~~-~~~~~~~~---~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG--DR-VTTSAAEA---VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC--ce-ecCCHHHH---hcCCCEEEECC
Confidence 468888765 5666666665544322489999999987665542 2321 11 11222111 13579999875
Q ss_pred hhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 197 FFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+... ...+++++...+++|+.++.+.
T Consensus 75 p~~~---------------~~~v~~~l~~~l~~~~iv~dvg 100 (307)
T PRK07502 75 PVGA---------------SGAVAAEIAPHLKPGAIVTDVG 100 (307)
T ss_pred CHHH---------------HHHHHHHHHhhCCCCCEEEeCc
Confidence 5432 2355667777888988665443
No 400
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.85 E-value=4.3 Score=39.67 Aligned_cols=110 Identities=13% Similarity=0.044 Sum_probs=67.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEE
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVV 193 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv 193 (293)
+|+= ||-|.++..+++.+.+. +..++.+|.+++.++.+++ .+ ..++.+|..+.. ..-.+.|.++
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~vv 469 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAAGAEKAEAIV 469 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhcCCccCCEEE
Confidence 4544 55677888888887655 3589999999998877654 23 467889987642 1224688888
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
+.-.= ++....+-...+.+.|...++.-. ..++..+.+++.|-+.+
T Consensus 470 ~~~~d---------------~~~n~~i~~~~r~~~p~~~IiaRa--~~~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 470 ITCNE---------------PEDTMKIVELCQQHFPHLHILARA--RGRVEAHELLQAGVTQF 515 (601)
T ss_pred EEeCC---------------HHHHHHHHHHHHHHCCCCeEEEEe--CCHHHHHHHHhCCCCEE
Confidence 75221 012223333445577877776522 24455566666665544
No 401
>PRK06196 oxidoreductase; Provisional
Probab=86.64 E-value=16 Score=32.29 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=52.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+++||=.| |+|.++..+++.+.+.| .+|++++.+++..+.+.+... ++.++.+|+.+.. . .
T Consensus 26 ~k~vlITG-asggIG~~~a~~L~~~G--~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 26 GKTAIVTG-GYSGLGLETTRALAQAG--AHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhc
Confidence 46788777 46778999999887764 589999998876554433322 2678889987642 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|++|.|..+.
T Consensus 97 ~~~iD~li~nAg~~ 110 (315)
T PRK06196 97 GRRIDILINNAGVM 110 (315)
T ss_pred CCCCCEEEECCCCC
Confidence 25689999987643
No 402
>PRK08177 short chain dehydrogenase; Provisional
Probab=86.38 E-value=12 Score=31.03 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=47.2
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC--------CCCCcc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP--------FGDNYF 189 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 189 (293)
++|=.|+ +|.++..+++.+.+.| .+|++++.++...+...+ . .++.+..+|+.+.. ...+++
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~----~---~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERG--WQVTATVRGPQQDTALQA----L---PGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCC--CEEEEEeCCCcchHHHHh----c---cccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 4665554 7888888988888764 599999988765433221 1 23567778876532 123579
Q ss_pred cEEEecchh
Q 022698 190 DVVVSAAFF 198 (293)
Q Consensus 190 D~Iv~~~~~ 198 (293)
|+|+.+...
T Consensus 73 d~vi~~ag~ 81 (225)
T PRK08177 73 DLLFVNAGI 81 (225)
T ss_pred CEEEEcCcc
Confidence 999988654
No 403
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=86.36 E-value=10 Score=33.30 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=62.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+|+=+|. |.++..+++.+...| .+|+.++.++...+.+ ...+. ... +..++...-..+|+|+.
T Consensus 150 ~gk~v~IiG~--G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~----~~~g~----~~~--~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 150 HGSNVMVLGF--GRTGMTIARTFSALG--ARVFVGARSSADLARI----TEMGL----IPF--PLNKLEEKVAEIDIVIN 215 (287)
T ss_pred CCCEEEEEcC--hHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHH----HHCCC----eee--cHHHHHHHhccCCEEEE
Confidence 4578999987 557788888776553 5999999998754333 22222 111 11111111246899998
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch-HHHHHHHHcCCcce
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP-EYVRRLQELKMEDI 256 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~l~~~gf~~~ 256 (293)
.-|...+. ++....++++..++=+...+.. ++ +..++.|.+.+
T Consensus 216 t~P~~ii~------------------~~~l~~~k~~aliIDlas~Pg~tdf-~~Ak~~G~~a~ 259 (287)
T TIGR02853 216 TIPALVLT------------------ADVLSKLPKHAVIIDLASKPGGTDF-EYAKKRGIKAL 259 (287)
T ss_pred CCChHHhC------------------HHHHhcCCCCeEEEEeCcCCCCCCH-HHHHHCCCEEE
Confidence 75544322 2234567886554433333322 44 67788886644
No 404
>PRK08643 acetoin reductase; Validated
Probab=86.26 E-value=19 Score=30.37 Aligned_cols=77 Identities=23% Similarity=0.182 Sum_probs=53.6
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 186 (293)
+++|=.| |+|.++..+++.+.+.| .+|+.++.++..++.........+ .++.++.+|+.+.. + ..
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDG--FKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3566666 56778889998887664 589999998877766655554433 34778899987632 1 12
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|.++.+..+
T Consensus 78 ~~id~vi~~ag~ 89 (256)
T PRK08643 78 GDLNVVVNNAGV 89 (256)
T ss_pred CCCCEEEECCCC
Confidence 468999988654
No 405
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.10 E-value=17 Score=31.88 Aligned_cols=82 Identities=23% Similarity=0.167 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------FG 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 185 (293)
++.|+==||.+| ++.+++.++.+.| .+++-+-.....++...+.++..+..+++..+++|+.+.. ..
T Consensus 12 ~kvVvITGASsG-IG~~lA~~la~~G--~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~ 88 (282)
T KOG1205|consen 12 GKVVLITGASSG-IGEALAYELAKRG--AKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH 88 (282)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHhCC--CceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence 557777787666 6778888887764 6778888888888877666555544336899999998753 12
Q ss_pred CCcccEEEecchhhh
Q 022698 186 DNYFDVVVSAAFFHT 200 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~ 200 (293)
-+..|+.|.|..+..
T Consensus 89 fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 89 FGRVDVLVNNAGISL 103 (282)
T ss_pred cCCCCEEEecCcccc
Confidence 367999999977655
No 406
>PRK07814 short chain dehydrogenase; Provisional
Probab=86.09 E-value=5 Score=34.32 Aligned_cols=78 Identities=18% Similarity=0.113 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-----G----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 185 (293)
++++|=.| |+|.++.++++.+.+.| .+|++++.+++.++...+.....+ .++.++.+|+.+... .
T Consensus 10 ~~~vlItG-asggIG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 10 DQVAVVTG-AGRGLGAAIALAFAEAG--ADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788887 57789999998887764 699999999887665555544333 347888899876321 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-+++|+|+.+...
T Consensus 85 ~~~id~vi~~Ag~ 97 (263)
T PRK07814 85 FGRLDIVVNNVGG 97 (263)
T ss_pred cCCCCEEEECCCC
Confidence 1468999987543
No 407
>PRK07985 oxidoreductase; Provisional
Probab=86.02 E-value=15 Score=32.08 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=65.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH--HHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK--RTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~--~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+. ...+...+.....+ .++.++.+|+.+.. +
T Consensus 49 ~k~vlITGa-s~gIG~aia~~L~~~G--~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 49 DRKALVTGG-DSGIGRAAAIAYAREG--ADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCC--CEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence 457888884 6778888988887764 5888876543 33333433333333 34778889987632 0
Q ss_pred -CCCcccEEEecchhhh-hccccCcchhhh-------HHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 185 -GDNYFDVVVSAAFFHT-VGKEYGHRTVEA-------AAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~~~-~~~~~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-++.|+++.|..... ............ ...+..+++.+.+.++.+|.++++.
T Consensus 124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 1246899998755321 110000000000 0011235566666777788877743
No 408
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=85.78 E-value=9.5 Score=34.98 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=62.0
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCc-eEEEEcCCCCCCCCCCcccEEEec
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEY-VTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
.+|+=++=.-|.++..++..-+ +.+--|--+-...+.|++.+++... +.+. +..+ +++ +.+|+|+.-
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~--------~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~-~~~-~~~d~vl~~ 113 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKP--------YSIGDSYISELATRENLRLNGIDESSVKFL--DSTA-DYP-QQPGVVLIK 113 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCC--------CeeehHHHHHHHHHHHHHHcCCCcccceee--cccc-ccc-CCCCEEEEE
Confidence 3799999999999999985321 2222233344466788888887532 4443 2222 222 448999875
Q ss_pred chhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 196 AFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
-|-.- ......+..+.+.|.||+.++..+
T Consensus 114 ~PK~~-------------~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 114 VPKTL-------------ALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred eCCCH-------------HHHHHHHHHHHhhCCCCCEEEEEE
Confidence 44221 245567888999999999987644
No 409
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.69 E-value=3.8 Score=36.96 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEcCC--CChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCC-C-CCCC
Q 022698 112 DWSTVKTALDIGCG--RGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRS-L-PFGD 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~ 186 (293)
...++.+||=.|++ .|..+..+++.. +.++++++.+++..+.+++. .|...-+..... +..+ . ....
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~-----G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLH-----GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHCC
Confidence 45677889888872 455555555543 46899999988766555422 233211111101 1111 0 0112
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+.+|+|+-.-. ...+..+.+.|++||+++++..
T Consensus 227 ~gvD~v~d~vG-------------------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 227 EGIDIYFDNVG-------------------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCcEEEEECCC-------------------HHHHHHHHHHhccCCEEEEECc
Confidence 35898885421 1345667789999999988654
No 410
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.67 E-value=4.7 Score=39.01 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=66.1
Q ss_pred CCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEEEecchhh
Q 022698 124 CGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVVVSAAFFH 199 (293)
Q Consensus 124 ~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~Iv~~~~~~ 199 (293)
||.|..+..+++.+.+.+ .+++.+|.+++.++.+++ .+ ...+.+|..+.. ..-++.|.+++.-.=
T Consensus 423 ~G~G~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~- 491 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAG--IPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLLLTIPN- 491 (558)
T ss_pred ECCChHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEEEEcCC-
Confidence 455778888998887653 589999999997766653 23 578889988732 122468876653110
Q ss_pred hhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 200 TVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
++....+-...+...|+..++... ..++..+.+++.|-..+
T Consensus 492 --------------~~~~~~iv~~~~~~~~~~~iiar~--~~~~~~~~l~~~Gad~v 532 (558)
T PRK10669 492 --------------GYEAGEIVASAREKRPDIEIIARA--HYDDEVAYITERGANQV 532 (558)
T ss_pred --------------hHHHHHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHcCCCEE
Confidence 011112222334556776665532 35677778888887654
No 411
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.60 E-value=2 Score=39.32 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=31.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHH
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTL 160 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~ 160 (293)
++.++.+||-|.+ .|+.++.++..-| .+|++||+||..+...+
T Consensus 32 ~i~~~d~vl~ItS-aG~N~L~yL~~~P-----~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 32 NIGPDDRVLTITS-AGCNALDYLLAGP-----KRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCCCCeEEEEcc-CCchHHHHHhcCC-----ceEEEEeCCHHHHHHHH
Confidence 4678889999954 5666666655543 59999999998766554
No 412
>PRK05855 short chain dehydrogenase; Validated
Probab=85.44 E-value=15 Score=35.28 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+.++|=+| |+|.++..+++.+.+.| .+|+.++.+...++...+..+..+ .++.++.+|+.+.. . .
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFAREG--AEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 35677666 47889999999988764 589999999887776655554444 34888999997642 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|+++.|....
T Consensus 390 ~g~id~lv~~Ag~~ 403 (582)
T PRK05855 390 HGVPDIVVNNAGIG 403 (582)
T ss_pred cCCCcEEEECCccC
Confidence 24689999986653
No 413
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.21 E-value=9.4 Score=33.71 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
.+.+++=+|+| ..+..++..+... +++|+++|.++...+.++ ..+. .+.. ..++...-..+|+|+.
T Consensus 151 ~g~kvlViG~G--~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~~--~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFG--RTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPFH--LSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eeec--HHHHHHHhCCCCEEEE
Confidence 46799999985 4777777766655 469999999987544433 2332 2221 1111111246899997
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.-|... +-++..+.++||+.++-+.
T Consensus 217 t~p~~~------------------i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 217 TIPALV------------------LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CCChhh------------------hhHHHHHcCCCCcEEEEEc
Confidence 533211 2234556788988776443
No 414
>PRK05872 short chain dehydrogenase; Provisional
Probab=85.20 E-value=23 Score=30.98 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=52.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.+++.++...+.... ..++..+.+|+.+.. . .
T Consensus 9 gk~vlItG-as~gIG~~ia~~l~~~G--~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 9 GKVVVVTG-AARGIGAELARRLHARG--AKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45788776 56678888888887664 6999999998876655444321 223556668887632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
-++.|++|.|....
T Consensus 83 ~g~id~vI~nAG~~ 96 (296)
T PRK05872 83 FGGIDVVVANAGIA 96 (296)
T ss_pred cCCCCEEEECCCcC
Confidence 25789999987653
No 415
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=85.16 E-value=13 Score=33.06 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=50.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-CC--CCcccEE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-FG--DNYFDVV 192 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~~fD~I 192 (293)
+++||=.| |+|.++..+++.+.+.+...+|+++|.++.......+.. . ..++.++.+|+.+.. .. -..+|+|
T Consensus 4 ~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~-~~~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 4 NKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---P-APCLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---C-CCcEEEEEccCCCHHHHHHHHhcCCEE
Confidence 45788666 479999999998876543358999987655332222111 1 134888999988742 10 1348999
Q ss_pred Eecchhh
Q 022698 193 VSAAFFH 199 (293)
Q Consensus 193 v~~~~~~ 199 (293)
+.+....
T Consensus 79 ih~Ag~~ 85 (324)
T TIGR03589 79 VHAAALK 85 (324)
T ss_pred EECcccC
Confidence 9875543
No 416
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.01 E-value=2.5 Score=35.48 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCC
Q 022698 100 YDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDV 179 (293)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~ 179 (293)
..+.+.++.....+ ...-|.+||.|.|.++..+...- .++...+++++..+.-.+...+... .+......|+
T Consensus 36 ~~lT~KIvK~A~~~-~~~~v~eIgPgpggitR~il~a~-----~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~ 107 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNL-TNAYVYEIGPGPGGITRSILNAD-----VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDV 107 (326)
T ss_pred hHHHHHHHHhcccc-ccceeEEecCCCCchhHHHHhcc-----hhheeeeeeccccChHHHHHhhcCC--cceEEecccc
Confidence 44666777666543 35679999999999999988652 2488899999888777766655443 3477777877
Q ss_pred CC
Q 022698 180 RS 181 (293)
Q Consensus 180 ~~ 181 (293)
..
T Consensus 108 LR 109 (326)
T KOG0821|consen 108 LR 109 (326)
T ss_pred ce
Confidence 54
No 417
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=84.98 E-value=20 Score=30.95 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=66.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEEcCCCC-C-------CCC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEG--VQEYVTAREGDVRS-L-------PFG 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~-~-------~~~ 185 (293)
...|+.+|||-=.-...+ +. +.+.+++=+|. |+.++.-++.+...+ ...+..++..|+.+ + .+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl----~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd 155 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRL----PW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFD 155 (260)
T ss_pred CcEEEEeCCccccHHHhc----CC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCC
Confidence 346999999987765433 21 11245555554 445555555555433 23568899999862 1 011
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEE
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
....-++++-.++.+++ .+....+++.+.+...||+.+++
T Consensus 156 ~~~ptl~i~EGvl~YL~----------~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 156 PTAPTAWLWEGLLMYLT----------EEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred CCCCeeeeecchhhcCC----------HHHHHHHHHHHHHhCCCCcEEEE
Confidence 23445777777777776 44778899999988889998887
No 418
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=84.92 E-value=7.1 Score=34.54 Aligned_cols=100 Identities=10% Similarity=0.019 Sum_probs=56.1
Q ss_pred CCCCCCCeEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCCC--CCC
Q 022698 111 NDWSTVKTALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRSL--PFG 185 (293)
Q Consensus 111 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~~--~~~ 185 (293)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++ .|...-+..... +..+. ...
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-----G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK-----GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKAS 204 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhC
Confidence 34567788988874 3455555555443 4689999999886666543 343210111110 11110 011
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
.+.+|+|+-.-. . ..+....++|+++|+++.+..
T Consensus 205 ~~gvdvv~d~~G-----------------~--~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 205 PDGYDCYFDNVG-----------------G--EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred CCCeEEEEECCC-----------------H--HHHHHHHHHhCcCcEEEEecc
Confidence 245898885311 1 234667889999999998653
No 419
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=84.88 E-value=2.1 Score=37.02 Aligned_cols=98 Identities=22% Similarity=0.250 Sum_probs=52.5
Q ss_pred hhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchhhhhccccCcchhhhHHHH
Q 022698 137 FKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAER 216 (293)
Q Consensus 137 ~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~ 216 (293)
+.+.|+..+|+|+|.++..++.+.+. |+.+ -...+... . ..+|+||..-|.. ..
T Consensus 5 L~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~~~~--~--~~~DlvvlavP~~---------------~~ 58 (258)
T PF02153_consen 5 LRKAGPDVEVYGYDRDPETLEAALEL----GIID---EASTDIEA--V--EDADLVVLAVPVS---------------AI 58 (258)
T ss_dssp HHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS---EEESHHHH--G--GCCSEEEE-S-HH---------------HH
T ss_pred HHhCCCCeEEEEEeCCHHHHHHHHHC----CCee---eccCCHhH--h--cCCCEEEEcCCHH---------------HH
Confidence 33344457999999999976665433 4422 11222111 1 2469999876654 44
Q ss_pred HHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcC---CcceEEeee
Q 022698 217 MRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELK---MEDIRVSER 261 (293)
Q Consensus 217 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~g---f~~~~~~~~ 261 (293)
..+++++...+++|+.+.=+..... ...+.+++.+ ...+-.+..
T Consensus 59 ~~~l~~~~~~~~~~~iv~Dv~SvK~-~~~~~~~~~~~~~~~~v~~HPM 105 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVTDVGSVKA-PIVEAMERLLPEGVRFVGGHPM 105 (258)
T ss_dssp HHHHHHHHCGS-TTSEEEE--S-CH-HHHHHHHHHHTSSGEEEEEEES
T ss_pred HHHHHHhhhhcCCCcEEEEeCCCCH-HHHHHHHHhcCcccceeecCCC
Confidence 5888999999999887765443332 3444444433 344444443
No 420
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.78 E-value=7.8 Score=35.14 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=55.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----CCC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----PFG 185 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~ 185 (293)
...++.+||=.|+| .++..+.+..... ++ +|+++|.++..++.+++ .|.. .++..+-.+. ...
T Consensus 188 ~i~~g~~VlV~G~G--~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~ 256 (371)
T cd08281 188 GVRPGQSVAVVGLG--GVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELT 256 (371)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHh
Confidence 35567788888864 4554443333322 34 69999999987776654 2321 1221111110 011
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
.+.+|+|+-... ....+....+.|+++|.++.+...
T Consensus 257 ~~g~d~vid~~G------------------~~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 257 GGGVDYAFEMAG------------------SVPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred CCCCCEEEECCC------------------ChHHHHHHHHHHhcCCEEEEEccC
Confidence 235899885421 013455667789999999886643
No 421
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.75 E-value=18 Score=33.75 Aligned_cols=70 Identities=16% Similarity=0.063 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccE
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDV 191 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 191 (293)
..+|+=+|+ |.++..+++.+... +..++.+|.+++.++.+++.. ..+.++.+|..+.. ..-.++|.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKE--GYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 467887777 77888888888765 358999999999777655432 12567888886532 12246888
Q ss_pred EEec
Q 022698 192 VVSA 195 (293)
Q Consensus 192 Iv~~ 195 (293)
|++.
T Consensus 301 vi~~ 304 (453)
T PRK09496 301 FIAL 304 (453)
T ss_pred EEEC
Confidence 8874
No 422
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=84.67 E-value=2.5 Score=32.16 Aligned_cols=66 Identities=20% Similarity=0.136 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCC-CCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFG-DNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Iv 193 (293)
+..+|+|+|-|.=.-....+ .+. +..|+++|+.+. ++. .| +.++.-|+.+.... =...|+|.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L---~~~--G~dV~~tDi~~~-------~a~-~g----~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKL---KER--GFDVIATDINPR-------KAP-EG----VNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp -SSEEEEET-TT--HHHHHH---HHH--S-EEEEE-SS-S------------S----TTEE---SSS--HHHHTTEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHH---HHc--CCcEEEEECccc-------ccc-cC----cceeeecccCCCHHHhcCCcEEE
Confidence 34599999998854433333 322 479999999987 222 33 57888999873321 13589999
Q ss_pred ecch
Q 022698 194 SAAF 197 (293)
Q Consensus 194 ~~~~ 197 (293)
|..|
T Consensus 76 SiRP 79 (127)
T PF03686_consen 76 SIRP 79 (127)
T ss_dssp EES-
T ss_pred EeCC
Confidence 8644
No 423
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.67 E-value=23 Score=31.45 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=53.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-STLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
+|.=||+| ..+..++..+...+...++..+|++++..+ .+..................|..+ + ...|+|+...
T Consensus 2 kI~IIGaG--~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~--l--~~aDiViita 75 (308)
T cd05292 2 KVAIVGAG--FVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD--C--KGADVVVITA 75 (308)
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH--h--CCCCEEEEcc
Confidence 46678875 455555555444432358999999987554 233222211111123333344322 1 3479999865
Q ss_pred hhhhhccccCcchhhh-HHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 197 FFHTVGKEYGHRTVEA-AAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 197 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.....+.....+.... ..-..++.+++.+ ..|+|++++..
T Consensus 76 ~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~t 116 (308)
T cd05292 76 GANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVT 116 (308)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEec
Confidence 5432221100111110 0112233444444 55889888864
No 424
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=84.63 E-value=10 Score=34.17 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=55.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC-C-C-CCCC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS-L-P-FGDN 187 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~-~-~~~~ 187 (293)
...++.+||=.|+ |.++..+.+..... +. +|+++|.++..++.+++ .|...-+.....+..+ + . ....
T Consensus 173 ~~~~g~~VlV~G~--g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 173 GVKRGDSVAVIGC--GGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCC
Confidence 3566788998876 44554444333322 34 59999999987776643 3321101111111100 0 0 1123
Q ss_pred cccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 188 YFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
.+|+|+-.-. . ...+....+.+++||+++++...
T Consensus 245 g~d~vid~~g-----------------~-~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 245 GADVVIDAVG-----------------R-PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CCCEEEECCC-----------------C-HHHHHHHHHHhccCCEEEEECCC
Confidence 5898885321 1 13455667789999999987653
No 425
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.55 E-value=6.7 Score=32.97 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+.++|=.|+ +|.++..+++.+.+.| .+++.++.++..++.+.+.....+ .++.++..|+.+.. . .
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G--~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKG--AKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457887775 6778888888887664 589999999877666555544433 34778888976531 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-+++|.|+.+...
T Consensus 80 ~~~id~vi~~ag~ 92 (253)
T PRK08217 80 FGQLNGLINNAGI 92 (253)
T ss_pred cCCCCEEEECCCc
Confidence 1468999988653
No 426
>PRK06125 short chain dehydrogenase; Provisional
Probab=84.31 E-value=24 Score=29.86 Aligned_cols=79 Identities=16% Similarity=0.032 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-CCCcc
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-GDNYF 189 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~f 189 (293)
++++|=.|+ +|.++..+++.+.+.| ++|++++.+++.++.+.+.+.... ..++.++..|+.+.. . .-++.
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEG--CHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 467888885 5668888888887654 699999999887766555444321 134778888887532 1 12578
Q ss_pred cEEEecchh
Q 022698 190 DVVVSAAFF 198 (293)
Q Consensus 190 D~Iv~~~~~ 198 (293)
|.+|.+...
T Consensus 83 d~lv~~ag~ 91 (259)
T PRK06125 83 DILVNNAGA 91 (259)
T ss_pred CEEEECCCC
Confidence 999988654
No 427
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.16 E-value=3.1 Score=38.02 Aligned_cols=102 Identities=18% Similarity=0.100 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEe
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVS 194 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~ 194 (293)
++.+|+=+|+| ..+...++.+... +++|+++|.++..++.+.... + ..+.....+...+.-.-..+|+|+.
T Consensus 166 ~~~~VlViGaG--~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 166 EPGDVTIIGGG--VVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCceEEEEcCC--HHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEE
Confidence 34578888775 5555555555444 358999999987665544332 1 1121111111111101135899997
Q ss_pred cchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 195 AAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
..+....+ .+..+-++..+.++||+.++-+.
T Consensus 237 a~~~~g~~------------~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 237 AVLIPGAK------------APKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred ccccCCCC------------CCcCcCHHHHhcCCCCCEEEEEe
Confidence 54321111 11112244456678998776543
No 428
>PRK09291 short chain dehydrogenase; Provisional
Probab=84.00 E-value=8.4 Score=32.58 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=52.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~I 192 (293)
++||=.|+ +|.++..+++.+.+.| .++++++.++...+.........+ .++.++.+|+.+.. ....+.|+|
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~v 77 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKG--HNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVL 77 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEE
Confidence 36777775 6778888888887654 689999988776655554444433 23788889987632 112478999
Q ss_pred Eecchh
Q 022698 193 VSAAFF 198 (293)
Q Consensus 193 v~~~~~ 198 (293)
+.|..+
T Consensus 78 i~~ag~ 83 (257)
T PRK09291 78 LNNAGI 83 (257)
T ss_pred EECCCc
Confidence 988554
No 429
>PRK09072 short chain dehydrogenase; Provisional
Probab=83.93 E-value=26 Score=29.81 Aligned_cols=78 Identities=15% Similarity=0.039 Sum_probs=53.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC---------CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF---------GD 186 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 186 (293)
+.++|=.|+ +|.++..+++.+.+.| .+|++++.+++.++....... . ..++.++.+|+.+..- ..
T Consensus 5 ~~~vlItG~-s~~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 5 DKRVLLTGA-SGGIGQALAEALAAAG--ARLLLVGRNAEKLEALAARLP-Y--PGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHh-c--CCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 446777765 5678888888887664 689999999887665554431 2 2458888999876320 02
Q ss_pred CcccEEEecchhh
Q 022698 187 NYFDVVVSAAFFH 199 (293)
Q Consensus 187 ~~fD~Iv~~~~~~ 199 (293)
++.|.|+.+..+.
T Consensus 79 ~~id~lv~~ag~~ 91 (263)
T PRK09072 79 GGINVLINNAGVN 91 (263)
T ss_pred CCCCEEEECCCCC
Confidence 4689999886543
No 430
>PLN02494 adenosylhomocysteinase
Probab=83.86 E-value=7.3 Score=36.72 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS 181 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~ 181 (293)
..+.+++.....-.+++|+=+|+|. ++..+++.+... +.+|+++|.++.....+ ...+. .+. ++.+
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~--IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA----~~~G~----~vv--~leE 305 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGD--VGKGCAAAMKAA--GARVIVTEIDPICALQA----LMEGY----QVL--TLED 305 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCH--HHHHHHHHHHHC--CCEEEEEeCCchhhHHH----HhcCC----eec--cHHH
Confidence 3444554443334578899999874 666666665433 46999999998633222 22232 111 2222
Q ss_pred CCCCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 182 LPFGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 182 ~~~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
. . ...|+|++...- ...+..+....+|+||+++.+....
T Consensus 306 a-l--~~ADVVI~tTGt-----------------~~vI~~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 306 V-V--SEADIFVTTTGN-----------------KDIIMVDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred H-H--hhCCEEEECCCC-----------------ccchHHHHHhcCCCCCEEEEcCCCC
Confidence 1 1 347999974321 1223356677999999999987643
No 431
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.36 E-value=23 Score=30.04 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=49.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|-.|+ +|.++..+++.+.+.| .+|+.++.+.. +...+.....+ .++.++..|+.+.. + .
T Consensus 8 ~k~~lItGa-s~gIG~aia~~l~~~G--~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 8 GKVAIITGC-NTGLGQGMAIGLAKAG--ADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC--CEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 567887775 6678889998887764 68888887542 22222333333 35788899987632 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|++|.|...
T Consensus 81 ~g~iD~lv~~ag~ 93 (251)
T PRK12481 81 MGHIDILINNAGI 93 (251)
T ss_pred cCCCCEEEECCCc
Confidence 2568999988654
No 432
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=83.25 E-value=22 Score=33.10 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=59.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH---hcCC---------CCceEEEEcCCCCCCC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK---MEGV---------QEYVTAREGDVRSLPF 184 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~---~~~~---------~~~v~~~~~d~~~~~~ 184 (293)
.+|.=||.| ..+..++..+.+.| .+|+++|+++..++..+.... ..++ .++..+. .+
T Consensus 4 ~kI~VIGlG--~~G~~~A~~La~~G--~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~~------ 72 (415)
T PRK11064 4 ETISVIGLG--YIGLPTAAAFASRQ--KQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-TT------ 72 (415)
T ss_pred cEEEEECcc--hhhHHHHHHHHhCC--CEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-cc------
Confidence 356666654 45555666665543 599999999997775321100 0000 0111111 11
Q ss_pred CCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc---CCCchHHHHHHHHc
Q 022698 185 GDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD---LLHVPEYVRRLQEL 251 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~l~~~ 251 (293)
....|+|+..-+-.. ..+ + ..+.......++.+.+.|++|..++... .....+....+.+.
T Consensus 73 -~~~aDvvii~vptp~-~~~-~---~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 73 -PEPADAFLIAVPTPF-KGD-H---EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred -cccCCEEEEEcCCCC-CCC-C---CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 124688886533211 000 1 1111245566788888898877766632 22334455555554
No 433
>PRK07890 short chain dehydrogenase; Provisional
Probab=83.24 E-value=8 Score=32.72 Aligned_cols=78 Identities=18% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.++.++..++.........+ .++.++..|+.+.. . .
T Consensus 5 ~k~vlItG-a~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 5 GKVVVVSG-VGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 45788666 47788999998887764 699999999887665555544333 34788999987532 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.|+.+...
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 1468999988654
No 434
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.16 E-value=28 Score=29.65 Aligned_cols=80 Identities=21% Similarity=0.102 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
.++++|=.|++ |.++..+++++.+.| .+++.++.++..++...+.....+ .++.++.+|+.+.. +
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G--~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAG--ATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 34578878765 567788888877664 689999999887776666655443 34788899987532 1
Q ss_pred CCCcccEEEecchhh
Q 022698 185 GDNYFDVVVSAAFFH 199 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~~ 199 (293)
.-++.|.++.+..+.
T Consensus 84 ~~~~id~li~~ag~~ 98 (265)
T PRK07097 84 EVGVIDILVNNAGII 98 (265)
T ss_pred hCCCCCEEEECCCCC
Confidence 115689999886653
No 435
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=83.07 E-value=6.1 Score=34.80 Aligned_cols=96 Identities=14% Similarity=0.014 Sum_probs=55.4
Q ss_pred CCCCCCCeEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-----C
Q 022698 111 NDWSTVKTALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-----P 183 (293)
Q Consensus 111 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-----~ 183 (293)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++ .|.. .++..+-.+. .
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-----G~~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~ 206 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK-----GCKVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKE 206 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHH
Confidence 34566778887774 3344555455443 4689999998886666544 3432 1221111111 0
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
...+.+|+|+..-. ...+....+.|+++|.++.+.
T Consensus 207 ~~~~gvd~vld~~g-------------------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 207 AAPDGIDCYFDNVG-------------------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HCCCCcEEEEECCC-------------------HHHHHHHHHhhccCCEEEEEc
Confidence 11245898885311 134567788999999998754
No 436
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.99 E-value=23 Score=29.81 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=54.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
+++||=.| |+|.++..+++++...| .+|++++.++...+.........+ .++.++.+|+.+.. + .
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEG--AKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34677555 57889999999887664 589999999887766555544433 34788889987532 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.+..|+|+.+...
T Consensus 79 ~~~~d~vi~~a~~ 91 (258)
T PRK12429 79 FGGVDILVNNAGI 91 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1468999987654
No 437
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=82.87 E-value=3.6 Score=29.65 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=36.7
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAA 196 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~ 196 (293)
.+|| +.||+|..+..++.. .++.++.+|+. +++...+..+.+.....+|+|+..|
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k----------------------~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK----------------------MNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHHHHHH----------------------HHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEECc
Confidence 4566 779999766554433 34445566664 6777777655432234689999876
Q ss_pred hhhh
Q 022698 197 FFHT 200 (293)
Q Consensus 197 ~~~~ 200 (293)
-+.+
T Consensus 59 qi~~ 62 (95)
T TIGR00853 59 QVAY 62 (95)
T ss_pred hHHH
Confidence 5543
No 438
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=82.82 E-value=34 Score=30.46 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=42.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-STLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
.+.+|.=||+|. .+..++..+...+-..++..+|++++.++ .+...........++.....|..++ ...|+||
T Consensus 5 ~~~ki~iiGaG~--vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~----~~adivI 78 (315)
T PRK00066 5 QHNKVVLVGDGA--VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC----KDADLVV 78 (315)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHh----CCCCEEE
Confidence 346899999854 55555444433332348999999887543 3333322221112345544443332 3479998
Q ss_pred ecch
Q 022698 194 SAAF 197 (293)
Q Consensus 194 ~~~~ 197 (293)
...-
T Consensus 79 itag 82 (315)
T PRK00066 79 ITAG 82 (315)
T ss_pred EecC
Confidence 7543
No 439
>PRK06139 short chain dehydrogenase; Provisional
Probab=82.77 E-value=7.4 Score=34.89 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=56.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+..+..+ .++.++..|+.+.. . .
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~~G--~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFARRG--ARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 456776665 6778888888887764 689999999998887776665554 34778888887532 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.+++|++|.|...
T Consensus 82 ~g~iD~lVnnAG~ 94 (330)
T PRK06139 82 GGRIDVWVNNVGV 94 (330)
T ss_pred cCCCCEEEECCCc
Confidence 2578999998654
No 440
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.75 E-value=35 Score=30.43 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHH-HHHHHHHhcCCCCceEEEE-cCCCCCCCCCCcccEE
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTL-STLRTAKMEGVQEYVTARE-GDVRSLPFGDNYFDVV 192 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~-~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~I 192 (293)
+..+|.=||+ |..+..++..+...+-..+++.+|++++..+ .+..............+.. .|..++ ...|+|
T Consensus 2 ~~~Ki~IiGa--G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~----~~adiv 75 (312)
T cd05293 2 PRNKVTVVGV--GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT----ANSKVV 75 (312)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh----CCCCEE
Confidence 3457888997 5566555555444343468999999886443 3333322221111123343 444432 236999
Q ss_pred EecchhhhhccccCcchhhhH-HHHHHHHHHHHHcccCCcEEEEEc
Q 022698 193 VSAAFFHTVGKEYGHRTVEAA-AERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+...-....+.+...+.+... .-..++.+.+.+. .|+|+++++.
T Consensus 76 vitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs 120 (312)
T cd05293 76 IVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS 120 (312)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence 874322111111111111100 0112344444444 7899988765
No 441
>PRK12744 short chain dehydrogenase; Provisional
Probab=82.70 E-value=28 Score=29.41 Aligned_cols=115 Identities=18% Similarity=0.154 Sum_probs=62.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC----HHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C--
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK----KRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis----~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+++.++.+ .+..+...+.....+ .++.++..|+.+.. +
T Consensus 8 ~k~vlItG-a~~gIG~~~a~~l~~~G--~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~ 82 (257)
T PRK12744 8 GKVVLIAG-GAKNLGGLIARDLAAQG--AKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDD 82 (257)
T ss_pred CcEEEEEC-CCchHHHHHHHHHHHCC--CcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHH
Confidence 45788777 46679999999887664 466666533 233333333333222 34788899987532 0
Q ss_pred ---CCCcccEEEecchhhhhccccCcch--hh-----hHHHHHHHHHHHHHcccCCcEEEE
Q 022698 185 ---GDNYFDVVVSAAFFHTVGKEYGHRT--VE-----AAAERMRVLGEMVRVLKPGGVGVV 235 (293)
Q Consensus 185 ---~~~~fD~Iv~~~~~~~~~~~~~~~~--~~-----~~~~~~~~l~~~~~~LkpgG~l~~ 235 (293)
.-++.|+++.+.............. .. ....+..+++.+.+.++++|.+++
T Consensus 83 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 83 AKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 1246899998865422111000000 00 001122356666677777776554
No 442
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=82.67 E-value=14 Score=31.81 Aligned_cols=143 Identities=13% Similarity=0.019 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcC--------CCcEEEEEeCCHHHHHHHHHHH-----------------------
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTG--------SLGRVVGLDCKKRTTLSTLRTA----------------------- 163 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~--------~~~~v~~vDis~~~l~~a~~~~----------------------- 163 (293)
....|+|+|-|+|...+.+.+..+... ....+++++.+|..-..+....
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 445799999999999888877665422 1246777776653322211110
Q ss_pred ---HhcCCCCceEEEEcCCCCC-CCCCC---cccEEEecchhhhhccccCcchhhhHHHH----HHHHHHHHHcccCCcE
Q 022698 164 ---KMEGVQEYVTAREGDVRSL-PFGDN---YFDVVVSAAFFHTVGKEYGHRTVEAAAER----MRVLGEMVRVLKPGGV 232 (293)
Q Consensus 164 ---~~~~~~~~v~~~~~d~~~~-~~~~~---~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~LkpgG~ 232 (293)
...+ .-...+..+|+.+. |..+. ++|+.+....- +..+| .+++..+++..+|||.
T Consensus 138 ~r~~~~g-~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFs-------------P~kNP~mW~~e~l~~~a~~~~~~~~ 203 (252)
T COG4121 138 AAAVRHG-LLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFR-------------PVKNPEMWEDELLNLMARIPYRDPT 203 (252)
T ss_pred HHhhhcc-hheeeeeeeehhhcCCcccccccCccEEecCCcc-------------ccCChhhccHHHHHHHHhhcCCCCc
Confidence 0111 12345666776553 21122 57777754221 11133 4688999999999999
Q ss_pred EEEEcCCCchHHHHHHHHcCCcceEEeeeeccceecceeeeeecC
Q 022698 233 GVVWDLLHVPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKP 277 (293)
Q Consensus 233 l~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+.- +...--+++-+.++||+..+. .++..++.+..+.++
T Consensus 204 l~t--~ssA~~vRr~L~~aGF~v~~r----~g~grKRem~~a~~~ 242 (252)
T COG4121 204 LAT--FAAAIAVRRRLEQAGFTVEKR----TGRGKKRELLRGVKI 242 (252)
T ss_pred eec--hHHHHHHHHHHHHcCceeeec----CCccccccchhhhcc
Confidence 854 333456889999999986543 444444456666654
No 443
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=82.47 E-value=18 Score=31.20 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcCCCCh---HH-HHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCc
Q 022698 113 WSTVKTALDIGCGRGI---LL-NAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNY 188 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~---~~-~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 188 (293)
.+...|||-+|+|+-. -+ ..|.+-+|. ++-++-.|+.+- . ++.-..+.+|-..+. ++.+
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~---~ailvDnDi~d~--------v-----SDa~~~~~~Dc~t~~-~~~k 121 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPE---DAILVDNDIRDY--------V-----SDADQSIVGDCRTYM-PPDK 121 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-T---T-EEEEEESS----------B------SSSEEEES-GGGEE-ESS-
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCC---CcEEEecchhhh--------c-----cccCCceeccccccC-CCCc
Confidence 3557899999999832 22 334444554 567888888654 1 122356678877754 3578
Q ss_pred ccEEEecch---hhhhccc-cCcchhhhHHHHHHHHHHHHHcccCCcEEEE--EcCCCchHHHHHHHHc
Q 022698 189 FDVVVSAAF---FHTVGKE-YGHRTVEAAAERMRVLGEMVRVLKPGGVGVV--WDLLHVPEYVRRLQEL 251 (293)
Q Consensus 189 fD~Iv~~~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~--~~~~~~~~~~~~l~~~ 251 (293)
||+|+|.-- ......+ ...++ -..-+..-+...|+-||.+.+ .+.....+..+++..-
T Consensus 122 ~DlIiSDmYd~~~k~~~~~n~~~~~-----fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F 185 (299)
T PF06460_consen 122 FDLIISDMYDGRTKNCDGENNSKEG-----FFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYF 185 (299)
T ss_dssp EEEEEE----TTS-SS-S------T-----HHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTE
T ss_pred ccEEEEecccccccccccccCCccc-----cHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhc
Confidence 999998632 1111100 00011 112344556678999999887 5666667777776543
No 444
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=82.42 E-value=27 Score=29.28 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++++.+.| .+|+.++.++. +.+.+.....+ .++.++..|+.+.. + .
T Consensus 5 ~k~vlItGa-s~gIG~~ia~~l~~~G--~~vi~~~r~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 5 GKVALVTGA-NTGLGQGIAVGLAEAG--ADIVGAGRSEP--SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEcCchH--HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 467888887 4668889998888764 58999987652 22333333322 34788899987632 0 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|.+|.+....
T Consensus 78 ~~~~d~li~~ag~~ 91 (248)
T TIGR01832 78 FGHIDILVNNAGII 91 (248)
T ss_pred cCCCCEEEECCCCC
Confidence 14689999886543
No 445
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=82.29 E-value=7.6 Score=32.74 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------C
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------F 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 184 (293)
+++++|=.| |+|.++..+++.+.+.| .+|++++.++...+...+.+...+. .++.++..|+.... .
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHG--ATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence 466888888 57889999998887764 5999999998777665555544332 34667777775211 0
Q ss_pred --CCCcccEEEecchh
Q 022698 185 --GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~ 198 (293)
..++.|.|+.+...
T Consensus 87 ~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 87 EEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHhCCCCEEEECCcc
Confidence 12468999987543
No 446
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.29 E-value=8.7 Score=36.87 Aligned_cols=86 Identities=21% Similarity=0.143 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CCCCcc
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FGDNYF 189 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~f 189 (293)
.+++||=-| |+|.++..+++++-+.+ ..++..+|.++..+....+.+...-...++.+.-+|+++.. +.+.+.
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence 345666555 77999999999887655 37999999999999988888776422345889999998853 345679
Q ss_pred cEEEecchhhhhc
Q 022698 190 DVVVSAAFFHTVG 202 (293)
Q Consensus 190 D~Iv~~~~~~~~~ 202 (293)
|+|+-...+-|+|
T Consensus 327 d~VfHAAA~KHVP 339 (588)
T COG1086 327 DIVFHAAALKHVP 339 (588)
T ss_pred ceEEEhhhhccCc
Confidence 9999988887776
No 447
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=82.16 E-value=7.9 Score=34.15 Aligned_cols=108 Identities=17% Similarity=0.076 Sum_probs=58.9
Q ss_pred EEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecchh
Q 022698 119 ALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAFF 198 (293)
Q Consensus 119 vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~ 198 (293)
|-=||+ |..+..++..+.+. +.+|++.|.+++..+.+.+ .+.. . ..+..++.......|+|++.-+-
T Consensus 3 Ig~IGl--G~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~----~g~~---~--~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 3 LGLIGL--GRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKE----DRTT---G--VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred EEEEcc--hHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCCc---c--cCCHHHHHhhcCCCCEEEEEcCc
Confidence 444665 56677777776654 3589999999987665543 2211 1 11222211011245888876433
Q ss_pred hhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC---CchHHHHHHHHcCCc
Q 022698 199 HTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL---HVPEYVRRLQELKME 254 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~l~~~gf~ 254 (293)
. ....+++++...|++|-.++-..-. ...+..+.+++.|..
T Consensus 70 ~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298)
T TIGR00872 70 G---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298)
T ss_pred h---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence 2 2345667788888887544332222 223344456666754
No 448
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.98 E-value=20 Score=35.21 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=67.5
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----CCCCcccEE
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----FGDNYFDVV 192 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~I 192 (293)
.+|+=+|+ |.++..+++.+.+. +.+++.+|.+++.++.+++ .+ ...+.+|..+.. ..-.+.|.+
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~agi~~A~~v 468 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESAGAAKAEVL 468 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence 46766665 55777777777654 3589999999998877754 23 467889987743 122468888
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCchHHHHHHHHcCCcce
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDI 256 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~gf~~~ 256 (293)
++.-. +++....+-...+.+.|+-.++.-. ...+....+++.|-+.+
T Consensus 469 vv~~~---------------d~~~n~~i~~~ar~~~p~~~iiaRa--~d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 469 INAID---------------DPQTSLQLVELVKEHFPHLQIIARA--RDVDHYIRLRQAGVEKP 515 (621)
T ss_pred EEEeC---------------CHHHHHHHHHHHHHhCCCCeEEEEE--CCHHHHHHHHHCCCCEE
Confidence 87421 0122223333445566776655522 23455666667766544
No 449
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.72 E-value=11 Score=32.82 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=50.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEecch
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSAAF 197 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~ 197 (293)
+|.=||+ |.++..++..+.+. +.+|+++|.+++.++.+.+. +. +.....+. + .-...|+|+..-|
T Consensus 2 ~I~IIG~--G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGL--GLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---LLKDCDLVILALP 66 (279)
T ss_pred eEEEEee--cHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---HhcCCCEEEEcCC
Confidence 3555664 56666676666544 35899999999877665432 22 11111111 1 1235799998755
Q ss_pred hhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEE
Q 022698 198 FHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVG 233 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 233 (293)
.. ....+++++...++++..+
T Consensus 67 ~~---------------~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IG---------------LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HH---------------HHHHHHHHHHHhCCCCcEE
Confidence 43 2335677888888877544
No 450
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.54 E-value=12 Score=31.25 Aligned_cols=79 Identities=22% Similarity=0.151 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC---C--------
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP---F-------- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~---~-------- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+|++++.++..++...+.+...+. ..+.+...|+.+.. .
T Consensus 6 ~k~vlItG-~sggiG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 6 DKTILVTG-ASQGLGEQVAKAYAAAG--ATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHcC--CEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHH
Confidence 45788888 57788889998887664 5899999999877665555443321 23556667764311 0
Q ss_pred --CCCcccEEEecchh
Q 022698 185 --GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 --~~~~fD~Iv~~~~~ 198 (293)
..+..|.|+.+...
T Consensus 82 ~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 82 EATQGKLDGIVHCAGY 97 (239)
T ss_pred HHhCCCCCEEEEeccc
Confidence 01468999987653
No 451
>PRK06182 short chain dehydrogenase; Validated
Probab=81.45 E-value=28 Score=29.76 Aligned_cols=73 Identities=21% Similarity=0.079 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+. +.+|++++.+++.++... .. ++.++.+|+.+.. + .
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~--G~~V~~~~r~~~~l~~~~----~~----~~~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQ--GYTVYGAARRVDKMEDLA----SL----GVHPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----hC----CCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 35677677 4667899999888765 469999999887554322 11 2677888887632 1 1
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.+..|++|.+..+.
T Consensus 72 ~~~id~li~~ag~~ 85 (273)
T PRK06182 72 EGRIDVLVNNAGYG 85 (273)
T ss_pred cCCCCEEEECCCcC
Confidence 24689999986654
No 452
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=81.40 E-value=11 Score=33.84 Aligned_cols=102 Identities=21% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCCCCCeEEEEcCCC--ChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC--CCC-
Q 022698 111 NDWSTVKTALDIGCGR--GILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL--PFG- 185 (293)
Q Consensus 111 ~~~~~~~~vLDiG~G~--G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~- 185 (293)
.+..++.+||=.|+.. |.+++.|++.+. ..++++--|++-.+. ++..|...-+.+...|+.+- ...
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G-----~~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG-----ATVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC-----CcEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHcC
Confidence 3456788999888433 555666665542 366666666654443 33444322233333333221 122
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCC
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLH 240 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 240 (293)
...+|+|+..- -...+.+....|+++|+++.+....
T Consensus 209 g~gvDvv~D~v-------------------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 209 GKGVDVVLDTV-------------------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCCceEEEECC-------------------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 23699999641 2345566778999999999876644
No 453
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.38 E-value=27 Score=29.04 Aligned_cols=79 Identities=28% Similarity=0.259 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEE-eCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGL-DCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG---- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~v-Dis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 185 (293)
++++|=.| |+|.++..+++.+.+.| .+++.+ +.++...+.........+ .++.++..|+.+.. ..
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEG--AKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 34677776 57889999988877653 588888 888876665555444332 34888999987632 10
Q ss_pred -CCcccEEEecchhh
Q 022698 186 -DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 -~~~fD~Iv~~~~~~ 199 (293)
-+++|.|+.+....
T Consensus 80 ~~~~id~vi~~ag~~ 94 (247)
T PRK05565 80 KFGKIDILVNNAGIS 94 (247)
T ss_pred HhCCCCEEEECCCcC
Confidence 13689999886543
No 454
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=81.27 E-value=2.6 Score=33.17 Aligned_cols=68 Identities=13% Similarity=0.012 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcccCCcEEEEEcCCC--------------chHHHHHHHHcCCcceEEeeeeccceecceeeeeecCCCC
Q 022698 215 ERMRVLGEMVRVLKPGGVGVVWDLLH--------------VPEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQH 280 (293)
Q Consensus 215 ~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (293)
--..+++-+++.|.|||.|++--... ....--.|.+.||+-++.+-.-.|.+-..+-+.+.||-..
T Consensus 71 ~E~~l~~~l~~~lspg~~lfVeYv~DrET~~~lqkG~~p~atrLGfeL~k~GftwfkdWY~PEG~mEGg~KlQAeKp~~~ 150 (192)
T COG4353 71 LEVKLYKVLYNFLSPGGKLFVEYVRDRETRYRLQKGKPPVATRLGFELLKAGFTWFKDWYFPEGGMEGGPKLQAEKPINS 150 (192)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEechhHHHHHHcCCCCccchhhHHHHhCcceeeeeeeccCccccccccccccCCCCh
Confidence 34578899999999999998832211 1234455678999999988888887766667777777554
Q ss_pred CC
Q 022698 281 YA 282 (293)
Q Consensus 281 ~~ 282 (293)
--
T Consensus 151 e~ 152 (192)
T COG4353 151 EE 152 (192)
T ss_pred HH
Confidence 33
No 455
>PRK07024 short chain dehydrogenase; Provisional
Probab=81.00 E-value=11 Score=31.92 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=52.2
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~ 186 (293)
++||=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+..... .++.++.+|+.+.. . ..
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 76 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQG--ATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAH 76 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 46666664 7788999999887764 58999999887765544433222 15888999987632 0 12
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|+++.|...
T Consensus 77 g~id~lv~~ag~ 88 (257)
T PRK07024 77 GLPDVVIANAGI 88 (257)
T ss_pred CCCCEEEECCCc
Confidence 458999988654
No 456
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=80.90 E-value=21 Score=33.73 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVV 193 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv 193 (293)
-.+++|+=+|+|. ++..+++.+... +++|+++|.++.....+. ..| +.+ .++.++ -...|+|+
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~----~~G----~~~--~~leel---l~~ADIVI 314 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRGF--GARVVVTEIDPICALQAA----MEG----YQV--VTLEDV---VETADIFV 314 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHC--CCEEEEEeCCchhHHHHH----hcC----cee--ccHHHH---HhcCCEEE
Confidence 3577899999875 777777776544 469999998876432222 123 222 222221 13579999
Q ss_pred ecchhhhhccccCcchhhhHHHHHHHH-HHHHHcccCCcEEEEEcCCCchHHHHHHHHcC-CcceEEeeee
Q 022698 194 SAAFFHTVGKEYGHRTVEAAAERMRVL-GEMVRVLKPGGVGVVWDLLHVPEYVRRLQELK-MEDIRVSERV 262 (293)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~~~~l~~~g-f~~~~~~~~~ 262 (293)
+...- . .++ ++....+|||++++-+.....+.....++..+ ....++++..
T Consensus 315 ~atGt-----------------~-~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~~vdv~evep~v 367 (476)
T PTZ00075 315 TATGN-----------------K-DIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEIKPQV 367 (476)
T ss_pred ECCCc-----------------c-cccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcCCceeecccCCC
Confidence 76321 1 122 35667899999999887765455556666644 4433343333
No 457
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.87 E-value=4 Score=36.36 Aligned_cols=100 Identities=16% Similarity=0.106 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-C-CCCCcc
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGR-VVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL-P-FGDNYF 189 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~-v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~f 189 (293)
..++.+||=.|+ |.++..+.+..... +++ ++++|.+++..+.+++. |...-+.....+...+ . .....+
T Consensus 161 ~~~g~~vlV~G~--G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 161 VSGRDTVLVVGA--GPVGLGALMLARAL--GAEDVIGVDPSPERLELAKAL----GADFVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----CCCEEEcCCcchHHHHHHHhCCCCC
Confidence 456778888875 55655554444333 345 99999998876665432 3211011111110000 0 112368
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+|+-... ....+....+.|+++|.++++..
T Consensus 233 d~vid~~g------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIECSG------------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEECCC------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 99985421 11234556678999999987654
No 458
>PRK06482 short chain dehydrogenase; Provisional
Probab=80.84 E-value=29 Score=29.71 Aligned_cols=75 Identities=19% Similarity=0.082 Sum_probs=50.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 186 (293)
+++|=.|+ +|.++..+++++.+.| .+|++++.+++.++...... ..++.++.+|+.+.. + ..
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g--~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARG--DRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAAL 74 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35775554 7889999999887664 58999999887655443321 134788899987632 0 01
Q ss_pred CcccEEEecchhh
Q 022698 187 NYFDVVVSAAFFH 199 (293)
Q Consensus 187 ~~fD~Iv~~~~~~ 199 (293)
++.|+|+.+....
T Consensus 75 ~~id~vi~~ag~~ 87 (276)
T PRK06482 75 GRIDVVVSNAGYG 87 (276)
T ss_pred CCCCEEEECCCCC
Confidence 4579999876543
No 459
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.79 E-value=31 Score=30.13 Aligned_cols=42 Identities=17% Similarity=0.007 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHH
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTA 163 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~ 163 (293)
+|.=||+| ..+..++..+... +.+|+.+|.+++.++.++++.
T Consensus 5 kIaViGaG--~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAG--VLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred EEEEECCC--HHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHH
Confidence 56677765 4555555555443 359999999999888877653
No 460
>PRK07326 short chain dehydrogenase; Provisional
Probab=80.77 E-value=12 Score=31.17 Aligned_cols=76 Identities=20% Similarity=0.062 Sum_probs=52.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
+.++|=.| |+|.++..+++.+.+. +.+|++++.++.......+..... .++.++.+|+.+.. +.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAE--GYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHC--CCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45788888 5888999999888765 358999999887666554444322 34788888987531 10
Q ss_pred CCcccEEEecch
Q 022698 186 DNYFDVVVSAAF 197 (293)
Q Consensus 186 ~~~fD~Iv~~~~ 197 (293)
-+.+|.|+.+..
T Consensus 80 ~~~~d~vi~~ag 91 (237)
T PRK07326 80 FGGLDVLIANAG 91 (237)
T ss_pred cCCCCEEEECCC
Confidence 136899997743
No 461
>PRK07454 short chain dehydrogenase; Provisional
Probab=80.26 E-value=17 Score=30.46 Aligned_cols=78 Identities=18% Similarity=0.100 Sum_probs=54.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
.+++|=.| |+|.++..+++.+.+.| .+|++++.++...+...+..+..+ .++.++.+|+.+.. +.
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAG--WDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45778777 57889999999887664 599999999876655544444332 35888899987642 11
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|.++.+...
T Consensus 81 ~~~id~lv~~ag~ 93 (241)
T PRK07454 81 FGCPDVLINNAGM 93 (241)
T ss_pred cCCCCEEEECCCc
Confidence 1458999987654
No 462
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.11 E-value=7.8 Score=34.51 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=55.8
Q ss_pred CCCCCCCeEEEEcC--CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEc-CCCC-C-CCC
Q 022698 111 NDWSTVKTALDIGC--GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREG-DVRS-L-PFG 185 (293)
Q Consensus 111 ~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~ 185 (293)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++. .|...-+..... +..+ + ...
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-----G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~ 218 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK-----GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF 218 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC
Confidence 34567788998875 2344444444443 46899999888866665542 232111111111 1111 0 011
Q ss_pred CCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 186 DNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
.+.+|+|+-... . ..+....+.|+++|.++.+.
T Consensus 219 ~~gvd~v~d~~g-----------------~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 219 PNGIDIYFDNVG-----------------G--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CCCcEEEEECCC-----------------H--HHHHHHHHHhccCcEEEEec
Confidence 246898885311 1 34567788999999998764
No 463
>PRK07102 short chain dehydrogenase; Provisional
Probab=79.97 E-value=14 Score=30.98 Aligned_cols=77 Identities=19% Similarity=0.131 Sum_probs=52.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCC-------CCCcc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPF-------GDNYF 189 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~f 189 (293)
++++=.| |+|.++..+++.+.+.| .+|++++.+++..+...+.....+ ..++.++.+|+.+... ...++
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAG--ARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 3677676 56888999998887664 589999999876655444433322 2458899999886421 01357
Q ss_pred cEEEecch
Q 022698 190 DVVVSAAF 197 (293)
Q Consensus 190 D~Iv~~~~ 197 (293)
|.++.+..
T Consensus 78 d~vv~~ag 85 (243)
T PRK07102 78 DIVLIAVG 85 (243)
T ss_pred CEEEECCc
Confidence 99998754
No 464
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=79.95 E-value=2.9 Score=30.77 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=29.1
Q ss_pred cccEEEecchhhhhccccCcc-hh-hhHHHHHHHHHHHHHcccCCcEEEEE
Q 022698 188 YFDVVVSAAFFHTVGKEYGHR-TV-EAAAERMRVLGEMVRVLKPGGVGVVW 236 (293)
Q Consensus 188 ~fD~Iv~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~LkpgG~l~~~ 236 (293)
+||+|+.||||.......... .. ...+-...++....++| +|.+.++
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I 50 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFI 50 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEE
Confidence 599999999997765322111 00 11223345777777877 8888653
No 465
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=79.69 E-value=13 Score=31.53 Aligned_cols=75 Identities=23% Similarity=0.075 Sum_probs=52.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CCC
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GDN 187 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 187 (293)
++|=.|+ +|.++..+++.+.+.| .+|+.++.++..++.+.+.....+ ++.++.+|+.+.. + .-+
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKKG--ARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5666775 5678888988887764 689999999887776655554332 3778889987532 0 125
Q ss_pred cccEEEecchh
Q 022698 188 YFDVVVSAAFF 198 (293)
Q Consensus 188 ~fD~Iv~~~~~ 198 (293)
+.|++|.|...
T Consensus 76 ~id~li~naG~ 86 (259)
T PRK08340 76 GIDALVWNAGN 86 (259)
T ss_pred CCCEEEECCCC
Confidence 78999988654
No 466
>PRK08339 short chain dehydrogenase; Provisional
Probab=79.64 E-value=38 Score=28.92 Aligned_cols=79 Identities=15% Similarity=0.015 Sum_probs=53.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C----CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----GD 186 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~ 186 (293)
++++|=.|++ |.++..+++.+.+.| .+|+.++.+++.++.+.+...... ..++.++.+|+.+.. + .-
T Consensus 8 ~k~~lItGas-~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 8 GKLAFTTASS-KGIGFGVARVLARAG--ADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 4567777654 567888888887764 689999999887766655543321 134788899987632 1 11
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|+++.|...
T Consensus 84 g~iD~lv~nag~ 95 (263)
T PRK08339 84 GEPDIFFFSTGG 95 (263)
T ss_pred CCCcEEEECCCC
Confidence 568999987543
No 467
>PRK05854 short chain dehydrogenase; Provisional
Probab=79.60 E-value=16 Score=32.34 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC----------CC
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP----------FG 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 185 (293)
+++++=.|+ +|.++..+++.+.+.| .+|+.+..+++..+.+.+.........++.++.+|+.+.. -.
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAAAG--AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 456776665 5678888888887664 6999999988776666555443221234888999987642 01
Q ss_pred CCcccEEEecchhh
Q 022698 186 DNYFDVVVSAAFFH 199 (293)
Q Consensus 186 ~~~fD~Iv~~~~~~ 199 (293)
.++.|++|.|....
T Consensus 91 ~~~iD~li~nAG~~ 104 (313)
T PRK05854 91 GRPIHLLINNAGVM 104 (313)
T ss_pred CCCccEEEECCccc
Confidence 25689999986543
No 468
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=79.40 E-value=8.1 Score=30.32 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCC
Q 022698 98 LHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCK 152 (293)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis 152 (293)
.+....+++...+... +.-|||+|=|+|..=-+|...+| +.+|+++|..
T Consensus 13 aQR~~L~~a~~~v~~~--~G~VlElGLGNGRTydHLRe~~p----~R~I~vfDR~ 61 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGL--PGPVLELGLGNGRTYDHLREIFP----DRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHHHTTT----S-EEEE--TTSHHHHHHHHH------SS-EEEEESS
T ss_pred HHHHHHHHHHHHhcCC--CCceEEeccCCCccHHHHHHhCC----CCeEEEEeee
Confidence 3455677788777653 35799999999999999988888 4699999964
No 469
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=79.34 E-value=6 Score=35.24 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=52.2
Q ss_pred CeEEEEcC--CCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CCCCc
Q 022698 117 KTALDIGC--GRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FGDNY 188 (293)
Q Consensus 117 ~~vLDiG~--G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~ 188 (293)
.+||=.|+ |.|..+..+++.. ++ +|++++.+++..+.+++. .|.. .++..+-.++. ...+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-----G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~~~~~g 224 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-----GCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLRELCPEG 224 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHHHCCCC
Confidence 68888875 3455555555543 35 799999988766555442 2332 12211111110 11246
Q ss_pred ccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 189 FDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 189 fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
+|+|+.... . ..+....+.|+++|+++.+.
T Consensus 225 vd~vid~~g-----------------~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 225 VDVYFDNVG-----------------G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ceEEEECCC-----------------c--HHHHHHHHHhccCCEEEEEe
Confidence 899985321 1 12356778999999998754
No 470
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=79.16 E-value=5.7 Score=35.47 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=46.2
Q ss_pred hhHhhhcccccccCccchHHHHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHH
Q 022698 82 VCLFFAAGNFFYSAVPLHYDMAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTT 156 (293)
Q Consensus 82 ~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l 156 (293)
++++....++.......-+++.+.+ .....++-.|.|||....-+.+.+.+.+++.+|+++|.....+
T Consensus 185 l~Qf~np~Np~~hy~ttg~EI~~q~-------~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~ 252 (362)
T KOG1252|consen 185 LDQFHNPGNPLAHYETTGPEIWRQL-------DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIV 252 (362)
T ss_pred HHHhcCCCCcccccccccHHHHHHh-------cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCccee
Confidence 6777777776644333444444433 2233578888888887777777777777789999999987643
No 471
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.06 E-value=30 Score=29.55 Aligned_cols=78 Identities=21% Similarity=0.063 Sum_probs=48.0
Q ss_pred CCeEEEEcC-CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGC-GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~-G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.|+ |++.++..+++.+.+.| .+|+.++......+..++.....+ . ..++.+|+.+.. +
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~Dv~d~~~v~~~~~~~~~ 80 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREG--AELAFTYVGDRFKDRITEFAAEFG--S-DLVFPCDVASDEQIDALFASLGQ 80 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCC--CeEEEEccchHHHHHHHHHHHhcC--C-cceeeccCCCHHHHHHHHHHHHH
Confidence 467888887 57889999999887764 588877654222222222222222 1 235678887532 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-+++|++|.|..+
T Consensus 81 ~~g~iD~lvnnAG~ 94 (260)
T PRK06997 81 HWDGLDGLVHSIGF 94 (260)
T ss_pred HhCCCcEEEEcccc
Confidence 12679999998754
No 472
>PRK07791 short chain dehydrogenase; Provisional
Probab=78.90 E-value=43 Score=29.07 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCH---------HHHHHHHHHHHhcCCCCceEEEEcCCCCCC--
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKK---------RTTLSTLRTAKMEGVQEYVTAREGDVRSLP-- 183 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~---------~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 183 (293)
.++++|=.|++ +.++..+++.+.+.| .+++.++.+. ..++.+.+.....+ .++.++..|+.+..
T Consensus 5 ~~k~~lITGas-~GIG~aia~~la~~G--~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v 79 (286)
T PRK07791 5 DGRVVIVTGAG-GGIGRAHALAFAAEG--ARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGA 79 (286)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCC--CEEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHH
Confidence 35678888864 567888888887654 5888888764 44444444443333 34778888987632
Q ss_pred ---C-----CCCcccEEEecchh
Q 022698 184 ---F-----GDNYFDVVVSAAFF 198 (293)
Q Consensus 184 ---~-----~~~~fD~Iv~~~~~ 198 (293)
+ .-++.|++|.|..+
T Consensus 80 ~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 80 ANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 0 12578999998654
No 473
>PRK08278 short chain dehydrogenase; Provisional
Probab=78.73 E-value=42 Score=28.84 Aligned_cols=79 Identities=19% Similarity=0.101 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHH-------HHHHHHHHHhcCCCCceEEEEcCCCCCC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRT-------TLSTLRTAKMEGVQEYVTAREGDVRSLP----- 183 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~-------l~~a~~~~~~~~~~~~v~~~~~d~~~~~----- 183 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+... ++...+.....+ .++.++.+|+.+..
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 6 GKTLFITGA-SRGIGLAIALRAARDG--ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHH
Confidence 457887766 6778888988887764 589998876532 222222333333 34788889987632
Q ss_pred CC-----CCcccEEEecchhh
Q 022698 184 FG-----DNYFDVVVSAAFFH 199 (293)
Q Consensus 184 ~~-----~~~fD~Iv~~~~~~ 199 (293)
+. -+++|.|+.+..+.
T Consensus 81 ~~~~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHHHHhCCCCEEEECCCCc
Confidence 11 14689999886543
No 474
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.44 E-value=19 Score=30.04 Aligned_cols=78 Identities=22% Similarity=0.137 Sum_probs=54.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
+.++|=.| |+|.++..+++++.+.| .+|+.++.++...+.........+ .++.++..|+.+.. +.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEG--VNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45788787 57889999999887664 599999998876665444443332 35888899987532 00
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.+..|.|+++...
T Consensus 82 ~~~id~vi~~ag~ 94 (239)
T PRK07666 82 LGSIDILINNAGI 94 (239)
T ss_pred cCCccEEEEcCcc
Confidence 1468999988654
No 475
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.27 E-value=5.8 Score=34.43 Aligned_cols=97 Identities=20% Similarity=0.163 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-cCCCC-C-C-CCCCcc
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE-GDVRS-L-P-FGDNYF 189 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~-~-~-~~~~~f 189 (293)
.++.+||=+|+ |.++..+++.....| ..+|+++|.++..++.+++. +.. .++. .+..+ . . .....+
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAAAG-AARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNGRGV 188 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCCCCC
Confidence 36778888876 445554444333332 12489999998877666543 321 1111 11000 0 0 112358
Q ss_pred cEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 190 DVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 190 D~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
|+|+-... ....++.+.+.|+++|+++++..
T Consensus 189 d~vid~~G------------------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFSG------------------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECCC------------------ChHHHHHHHHHhcCCCEEEEecc
Confidence 98885321 12355667789999999998764
No 476
>PRK06172 short chain dehydrogenase; Provisional
Probab=78.27 E-value=18 Score=30.49 Aligned_cols=78 Identities=22% Similarity=0.114 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.....+ .++.++.+|+.+.. + .
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREG--AKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467888885 6778888888887664 689999999887666655554443 45888899987632 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-+++|+|+.+...
T Consensus 82 ~g~id~li~~ag~ 94 (253)
T PRK06172 82 YGRLDYAFNNAGI 94 (253)
T ss_pred hCCCCEEEECCCC
Confidence 1468999988654
No 477
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=78.02 E-value=12 Score=33.90 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=50.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEE-cCCCCCCCCCCcccEE
Q 022698 114 STVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTARE-GDVRSLPFGDNYFDVV 192 (293)
Q Consensus 114 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~I 192 (293)
.++.+||=.|+| .++..+.+..... +.++++++.++.....+ ++..|.. .++. .+........+.+|+|
T Consensus 182 ~~g~~VlV~G~G--~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~~~~~D~v 251 (360)
T PLN02586 182 EPGKHLGVAGLG--GLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAAIGTMDYI 251 (360)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhhcCCCCEE
Confidence 456788877764 4555444433333 35788888876533222 1223321 1111 1100110011247888
Q ss_pred EecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcC
Q 022698 193 VSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDL 238 (293)
Q Consensus 193 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 238 (293)
+-... . ...+....+.|++||.++.+..
T Consensus 252 id~~g-----------------~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 252 IDTVS-----------------A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EECCC-----------------C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 85321 0 1245667789999999987653
No 478
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.91 E-value=20 Score=30.31 Aligned_cols=78 Identities=23% Similarity=0.180 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+++.++...+.....+ .++.++.+|+.+.. + .
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREG--AKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456776654 5778888888887764 589999999887776665555443 34788889987632 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-++.|+++.|...
T Consensus 81 ~~~id~li~~ag~ 93 (254)
T PRK07478 81 FGGLDIAFNNAGT 93 (254)
T ss_pred cCCCCEEEECCCC
Confidence 2468999988654
No 479
>PRK05884 short chain dehydrogenase; Provisional
Probab=77.65 E-value=30 Score=28.78 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=44.5
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC--CCccc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG--DNYFD 190 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~--~~~fD 190 (293)
++|=.|+ +|.++..+++.+.+. +.+|+.++.+++.++...+.. + +.++.+|+.+.. .. .+++|
T Consensus 2 ~vlItGa-s~giG~~ia~~l~~~--g~~v~~~~r~~~~~~~~~~~~---~----~~~~~~D~~~~~~v~~~~~~~~~~id 71 (223)
T PRK05884 2 EVLVTGG-DTDLGRTIAEGFRND--GHKVTLVGARRDDLEVAAKEL---D----VDAIVCDNTDPASLEEARGLFPHHLD 71 (223)
T ss_pred eEEEEeC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhc---c----CcEEecCCCCHHHHHHHHHHHhhcCc
Confidence 3555555 456888888888765 469999999887554433221 1 456778886532 00 13589
Q ss_pred EEEecch
Q 022698 191 VVVSAAF 197 (293)
Q Consensus 191 ~Iv~~~~ 197 (293)
+++.|..
T Consensus 72 ~lv~~ag 78 (223)
T PRK05884 72 TIVNVPA 78 (223)
T ss_pred EEEECCC
Confidence 9998754
No 480
>PRK05693 short chain dehydrogenase; Provisional
Probab=77.39 E-value=43 Score=28.66 Aligned_cols=71 Identities=23% Similarity=0.141 Sum_probs=47.2
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------CCC
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------GDN 187 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 187 (293)
++|=.| |+|.++..+++.+.+. +.+|++++.++..++... ..+ +.++.+|+.+.. . ..+
T Consensus 3 ~vlItG-asggiG~~la~~l~~~--G~~V~~~~r~~~~~~~~~----~~~----~~~~~~Dl~~~~~~~~~~~~~~~~~~ 71 (274)
T PRK05693 3 VVLITG-CSSGIGRALADAFKAA--GYEVWATARKAEDVEALA----AAG----FTAVQLDVNDGAALARLAEELEAEHG 71 (274)
T ss_pred EEEEec-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HCC----CeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 566566 5778888898888765 469999999887554332 112 567778876531 0 124
Q ss_pred cccEEEecchhh
Q 022698 188 YFDVVVSAAFFH 199 (293)
Q Consensus 188 ~fD~Iv~~~~~~ 199 (293)
+.|+||.+....
T Consensus 72 ~id~vi~~ag~~ 83 (274)
T PRK05693 72 GLDVLINNAGYG 83 (274)
T ss_pred CCCEEEECCCCC
Confidence 689999886543
No 481
>PLN02740 Alcohol dehydrogenase-like
Probab=77.35 E-value=16 Score=33.20 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=56.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcC-----CCC-C-C
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGD-----VRS-L-P 183 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d-----~~~-~-~ 183 (293)
...++.+||=+|+ |.++..+++..... ++ +|+++|.+++.++.+++ .|.. .++... +.+ . .
T Consensus 195 ~~~~g~~VlV~G~--G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~ 263 (381)
T PLN02740 195 NVQAGSSVAIFGL--GAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIRE 263 (381)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHH
Confidence 4567789999986 45555554443333 34 69999999987777654 3432 122111 110 0 0
Q ss_pred CCCCcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCC-cEEEEEcCC
Q 022698 184 FGDNYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPG-GVGVVWDLL 239 (293)
Q Consensus 184 ~~~~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~ 239 (293)
...+.+|+|+-... ....+......+++| |+++++...
T Consensus 264 ~~~~g~dvvid~~G------------------~~~~~~~a~~~~~~g~G~~v~~G~~ 302 (381)
T PLN02740 264 MTGGGVDYSFECAG------------------NVEVLREAFLSTHDGWGLTVLLGIH 302 (381)
T ss_pred HhCCCCCEEEECCC------------------ChHHHHHHHHhhhcCCCEEEEEccC
Confidence 11225899886422 113455666788886 998876643
No 482
>PRK07831 short chain dehydrogenase; Provisional
Probab=77.32 E-value=16 Score=31.00 Aligned_cols=81 Identities=26% Similarity=0.125 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEEcCCCCCC-----C----
Q 022698 115 TVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKM-EGVQEYVTAREGDVRSLP-----F---- 184 (293)
Q Consensus 115 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~-~~~~~~v~~~~~d~~~~~-----~---- 184 (293)
.++++|=.|+....++..+++.+...| .+|+.+|.++..++...+..+. .+ ..++.++.+|+.+.. +
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEG--ARVVISDIHERRLGETADELAAELG-LGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEEccCCCHHHHHHHHHHHH
Confidence 346788887642257777888776654 5899999988877666555443 22 134788889987631 0
Q ss_pred -CCCcccEEEecchh
Q 022698 185 -GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 -~~~~fD~Iv~~~~~ 198 (293)
.-++.|+++.+...
T Consensus 93 ~~~g~id~li~~ag~ 107 (262)
T PRK07831 93 ERLGRLDVLVNNAGL 107 (262)
T ss_pred HHcCCCCEEEECCCC
Confidence 11568999988764
No 483
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=77.28 E-value=19 Score=31.69 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=55.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----CCCC
Q 022698 112 DWSTVKTALDIGCGRGILLNAVATQFKKTGSLGR-VVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSL----PFGD 186 (293)
Q Consensus 112 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~-v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~ 186 (293)
...++.+||-.|+ |..+..+++..... +.+ +++++.+++..+.+++. +.. .++..+-.+. ....
T Consensus 156 ~~~~g~~vlI~g~--g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 156 GIKPGDSVLVFGA--GPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcC
Confidence 4556789999975 44444444333333 345 89999998876665432 321 2222211110 0123
Q ss_pred CcccEEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEc
Q 022698 187 NYFDVVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWD 237 (293)
Q Consensus 187 ~~fD~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 237 (293)
..+|+++..-. ....+..+.+.|+++|.++.+.
T Consensus 225 ~~vd~v~~~~~------------------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATG------------------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCC------------------ChHHHHHHHHHHhcCCEEEEEe
Confidence 56999996421 1235566778899999988754
No 484
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=77.16 E-value=20 Score=33.95 Aligned_cols=110 Identities=12% Similarity=0.046 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEEEec-chhhhhcc
Q 022698 125 GRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVVVSA-AFFHTVGK 203 (293)
Q Consensus 125 G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iv~~-~~~~~~~~ 203 (293)
|.|..+..++..+.+.| .+|++.|.+++..+...+.....+.. +. ...+..++.-.-...|+|+.. ++-.
T Consensus 8 GLG~MG~~lA~nL~~~G--~~V~v~dr~~~~~~~l~~~~~~~g~~--i~-~~~s~~e~v~~l~~~d~Iil~v~~~~---- 78 (470)
T PTZ00142 8 GLAVMGQNLALNIASRG--FKISVYNRTYEKTEEFVKKAKEGNTR--VK-GYHTLEELVNSLKKPRKVILLIKAGE---- 78 (470)
T ss_pred eEhHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhhhhcCCc--ce-ecCCHHHHHhcCCCCCEEEEEeCChH----
Confidence 44666777777776654 59999999999877666543322311 11 122322211111235766654 3322
Q ss_pred ccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCCCch---HHHHHHHHcCCc
Q 022698 204 EYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVP---EYVRRLQELKME 254 (293)
Q Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~l~~~gf~ 254 (293)
....+++.+...|++|-+++-..-.... ...+.+.+.|..
T Consensus 79 -----------~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~ 121 (470)
T PTZ00142 79 -----------AVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL 121 (470)
T ss_pred -----------HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence 3346778888889888765443322223 344455555644
No 485
>PRK06949 short chain dehydrogenase; Provisional
Probab=77.00 E-value=21 Score=30.10 Aligned_cols=78 Identities=19% Similarity=0.130 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-C---------C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-F---------G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 185 (293)
+++||=.| |+|.++..+++.+.+.| .+|++++.+++.++.........+ .++.++.+|+.+.. . .
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAG--AKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 46788887 67888999998887664 589999999887766655544332 34788888886531 0 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.++.|+|+.+...
T Consensus 84 ~~~~d~li~~ag~ 96 (258)
T PRK06949 84 AGTIDILVNNSGV 96 (258)
T ss_pred cCCCCEEEECCCC
Confidence 2468999988654
No 486
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=76.96 E-value=9.8 Score=33.91 Aligned_cols=79 Identities=28% Similarity=0.348 Sum_probs=50.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH-hcCCCCceEEEEcCCCCCC-----CCCCccc
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK-MEGVQEYVTAREGDVRSLP-----FGDNYFD 190 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~-~~~~~~~v~~~~~d~~~~~-----~~~~~fD 190 (293)
.+||=.| |.|.++.+.+-++-+.| -.|+++|.=......+-++.+ ..+-...+.|...|+.+.+ |...+||
T Consensus 3 ~~VLVtG-gaGyiGsht~l~L~~~g--y~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd 79 (343)
T KOG1371|consen 3 KHVLVTG-GAGYIGSHTVLALLKRG--YGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFD 79 (343)
T ss_pred cEEEEec-CCcceehHHHHHHHhCC--CcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCc
Confidence 4677665 67888777777766664 489999944333333333322 2232356999999998854 4456799
Q ss_pred EEEecchh
Q 022698 191 VVVSAAFF 198 (293)
Q Consensus 191 ~Iv~~~~~ 198 (293)
.|+-....
T Consensus 80 ~V~Hfa~~ 87 (343)
T KOG1371|consen 80 AVMHFAAL 87 (343)
T ss_pred eEEeehhh
Confidence 99876554
No 487
>PRK08862 short chain dehydrogenase; Provisional
Probab=76.95 E-value=43 Score=28.01 Aligned_cols=77 Identities=18% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|++. .++..++..+.+.| .+|+.++.+++.++...+.....+ ..+..+.+|..+.. + .
T Consensus 5 ~k~~lVtGas~-GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 5 SSIILITSAGS-VLGRTISCHFARLG--ATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CeEEEEECCcc-HHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 45788777766 56788888887664 689999999988877666555444 23666777876532 1 1
Q ss_pred CC-cccEEEecch
Q 022698 186 DN-YFDVVVSAAF 197 (293)
Q Consensus 186 ~~-~fD~Iv~~~~ 197 (293)
-+ +.|+++.|..
T Consensus 80 ~g~~iD~li~nag 92 (227)
T PRK08862 80 FNRAPDVLVNNWT 92 (227)
T ss_pred hCCCCCEEEECCc
Confidence 14 7999998864
No 488
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=76.93 E-value=21 Score=30.21 Aligned_cols=79 Identities=19% Similarity=0.086 Sum_probs=52.8
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----CC
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----GD 186 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 186 (293)
++||=.| |+|.++..+++.+.+.| .+++.+|.++...+...+......-..++.++.+|+.+.. . .-
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g--~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEG--YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4677777 57888999998887764 6999999988766554443332211134788889987532 0 01
Q ss_pred CcccEEEecchh
Q 022698 187 NYFDVVVSAAFF 198 (293)
Q Consensus 187 ~~fD~Iv~~~~~ 198 (293)
++.|.|+.+...
T Consensus 80 ~~id~vv~~ag~ 91 (259)
T PRK12384 80 GRVDLLVYNAGI 91 (259)
T ss_pred CCCCEEEECCCc
Confidence 468999987643
No 489
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=76.81 E-value=12 Score=33.49 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=53.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCc-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCC---C--CCCC
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLG-RVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRS---L--PFGD 186 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~-~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~---~--~~~~ 186 (293)
..++.+||=.|+ |.++..+.+..... +. .+++++.+++.++.+++ .+.. .++..+-.. . ....
T Consensus 158 ~~~g~~vlV~G~--g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~ 226 (347)
T PRK10309 158 GCEGKNVIIIGA--GTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKS----LGAM---QTFNSREMSAPQIQSVLRE 226 (347)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH----cCCc---eEecCcccCHHHHHHHhcC
Confidence 456778888876 44555444333333 24 47899999987766543 2321 121111000 0 0122
Q ss_pred Cccc-EEEecchhhhhccccCcchhhhHHHHHHHHHHHHHcccCCcEEEEEcCC
Q 022698 187 NYFD-VVVSAAFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLL 239 (293)
Q Consensus 187 ~~fD-~Iv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 239 (293)
..+| +|+-... -...+....+.|++||.++++...
T Consensus 227 ~~~d~~v~d~~G------------------~~~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 227 LRFDQLILETAG------------------VPQTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CCCCeEEEECCC------------------CHHHHHHHHHHhhcCCEEEEEccC
Confidence 3577 5543211 123566677899999999987643
No 490
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=76.78 E-value=53 Score=29.02 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=39.6
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhc-C-CCCceEEEEcCCCCCCCCCCcccEEEec
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKME-G-VQEYVTAREGDVRSLPFGDNYFDVVVSA 195 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~-~-~~~~v~~~~~d~~~~~~~~~~fD~Iv~~ 195 (293)
+|.=+|| |..+..++..+...+...+++.+|++++..+....-+... . ....+.+...+..++ ...|+|+..
T Consensus 2 kI~IIGa--G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l----~~aDIVIit 75 (306)
T cd05291 2 KVVIIGA--GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDC----KDADIVVIT 75 (306)
T ss_pred EEEEECC--CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHh----CCCCEEEEc
Confidence 4667787 5566666665554442348999999887654333222211 0 011233333333321 358999976
Q ss_pred ch
Q 022698 196 AF 197 (293)
Q Consensus 196 ~~ 197 (293)
..
T Consensus 76 ag 77 (306)
T cd05291 76 AG 77 (306)
T ss_pred cC
Confidence 43
No 491
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=76.76 E-value=45 Score=28.16 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| ++|+++|.+.. +...+.....+ .++.++..|+.+.. + .
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G--~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAG--CDIVGINIVEP--TETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEecCcch--HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 457777775 6788999999887764 68999887643 22222333322 34778888987531 1 1
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.++.|+++.+..+
T Consensus 83 ~~~~D~li~~Ag~ 95 (253)
T PRK08993 83 FGHIDILVNNAGL 95 (253)
T ss_pred hCCCCEEEECCCC
Confidence 2468999988654
No 492
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=76.71 E-value=5.3 Score=34.15 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHH
Q 022698 102 MAQRMVGSVNDWSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAK 164 (293)
Q Consensus 102 ~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~ 164 (293)
+..++.+.+... +..+++|+-||+|.++..+... +.+++.-|+++......+..++
T Consensus 8 l~~~I~~~ip~~-~~~~~vepF~G~g~V~~~~~~~------~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKN-KHKTYVEPFAGGGSVFLNLKQP------GKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S--S-SEEEETT-TTSHHHHCC---------SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CCCEEEEEecchhHHHHHhccc------ccceeeeechHHHHHHHHHHHh
Confidence 556777777532 5779999999999998777552 4599999999987776663433
No 493
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=76.66 E-value=45 Score=28.14 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=49.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.| |+|.++..+++.+.+.| .+|+.+|.++. .....+.....+ .++.++.+|+.+.. . .
T Consensus 8 ~k~vlVtG-as~gIG~~la~~l~~~G--~~v~~~~r~~~-~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 8 GKVVVVTG-AAQGIGRGVALRAAAEG--ARVVLVDRSEL-VHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCC--CEEEEEeCchH-HHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 45677777 56778888888887664 58999998864 333333333322 34778888887632 0 1
Q ss_pred CCcccEEEecch
Q 022698 186 DNYFDVVVSAAF 197 (293)
Q Consensus 186 ~~~fD~Iv~~~~ 197 (293)
-+.+|+++.|..
T Consensus 82 ~~~id~lv~nAg 93 (260)
T PRK12823 82 FGRIDVLINNVG 93 (260)
T ss_pred cCCCeEEEECCc
Confidence 246899998764
No 494
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=76.62 E-value=25 Score=30.49 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=52.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCCCCCCcccEE
Q 022698 113 WSTVKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLPFGDNYFDVV 192 (293)
Q Consensus 113 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I 192 (293)
+.++..-.|+|+-.|..+..|.++ +-.|+++|--+- ..++... +.|+-...|...+.....+.|-.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr------~m~V~aVDng~m-----a~sL~dt---g~v~h~r~DGfk~~P~r~~idWm 274 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR------NMRVYAVDNGPM-----AQSLMDT---GQVTHLREDGFKFRPTRSNIDWM 274 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc------ceEEEEeccchh-----hhhhhcc---cceeeeeccCcccccCCCCCceE
Confidence 567889999999999999888876 569999997553 2233333 34788888887765445679999
Q ss_pred Eecch
Q 022698 193 VSAAF 197 (293)
Q Consensus 193 v~~~~ 197 (293)
||..+
T Consensus 275 VCDmV 279 (358)
T COG2933 275 VCDMV 279 (358)
T ss_pred Eeehh
Confidence 99754
No 495
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=76.60 E-value=12 Score=29.75 Aligned_cols=64 Identities=16% Similarity=-0.002 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcccCCcEEEEEcCCCc--------------hHHHHHHHHcCCcceEEeeeeccceecceeeeeecCCC
Q 022698 216 RMRVLGEMVRVLKPGGVGVVWDLLHV--------------PEYVRRLQELKMEDIRVSERVTAFMVSSHIVSFRKPSQ 279 (293)
Q Consensus 216 ~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (293)
-..+++-+++.|.|||++++--.... ...-..|.+.||+-++-+-.-.|+.-..+-+.+.||..
T Consensus 65 E~~l~~~~~~~l~pg~~lfVeY~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfKdWYfPEG~~EGg~KlQa~Kpl~ 142 (170)
T PF06557_consen 65 EDELYKLFSRYLEPGGRLFVEYVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFKDWYFPEGGMEGGPKLQAEKPLN 142 (170)
T ss_dssp HHHHHHHHHTT----SEEEEE-TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEEEEE--TTTSTT-EEEEEE--SS
T ss_pred HHHHHHHHHHHhhhcCeEEEEEecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEeeeeccCccccCCceeeeecCCC
Confidence 35688999999999999998332211 13455667789999998888888776677888888754
No 496
>PRK06101 short chain dehydrogenase; Provisional
Probab=76.52 E-value=44 Score=27.95 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=45.7
Q ss_pred eEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC--CCccc
Q 022698 118 TALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG--DNYFD 190 (293)
Q Consensus 118 ~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~--~~~fD 190 (293)
++|=.| |+|.++..+++.+.+.| .+|++++.+++.++...+. + .++.++.+|+.+.. .. ....|
T Consensus 3 ~vlItG-as~giG~~la~~L~~~G--~~V~~~~r~~~~~~~~~~~----~--~~~~~~~~D~~~~~~~~~~~~~~~~~~d 73 (240)
T PRK06101 3 AVLITG-ATSGIGKQLALDYAKQG--WQVIACGRNQSVLDELHTQ----S--ANIFTLAFDVTDHPGTKAALSQLPFIPE 73 (240)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHh----c--CCCeEEEeeCCCHHHHHHHHHhcccCCC
Confidence 466555 57889999999887664 6899999988765443221 1 24778889987632 00 12357
Q ss_pred EEEecch
Q 022698 191 VVVSAAF 197 (293)
Q Consensus 191 ~Iv~~~~ 197 (293)
.++.|..
T Consensus 74 ~~i~~ag 80 (240)
T PRK06101 74 LWIFNAG 80 (240)
T ss_pred EEEEcCc
Confidence 7776654
No 497
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=76.48 E-value=15 Score=33.69 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=29.4
Q ss_pred CeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHH
Q 022698 117 KTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTL 160 (293)
Q Consensus 117 ~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~ 160 (293)
.+|-=+| -|.+++.++..+...| .+|+|+||++..++...
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~~G--~~ViG~DIn~~~Vd~ln 49 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFASAG--FKVIGVDINQKKVDKLN 49 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHHcC--CceEeEeCCHHHHHHHh
Confidence 4555554 5777777887777654 69999999999776544
No 498
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=76.34 E-value=46 Score=28.10 Aligned_cols=77 Identities=22% Similarity=0.105 Sum_probs=50.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----C
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F-----G 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.+. ..+.+.+.....+ .++.++.+|+.+.. + .
T Consensus 15 ~k~vlItGa-s~gIG~~ia~~l~~~G--~~v~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 15 GKVAIVTGG-NTGLGQGYAVALAKAG--ADIIITTHGT-NWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC--CEEEEEeCCc-HHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567887776 5667888888887664 6888888773 3344444433333 34788899987632 0 0
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
-+..|.++.+...
T Consensus 89 ~g~id~li~~ag~ 101 (258)
T PRK06935 89 FGKIDILVNNAGT 101 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1468999988654
No 499
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=76.26 E-value=15 Score=32.49 Aligned_cols=78 Identities=15% Similarity=0.065 Sum_probs=53.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEcCCCCCC-----CC-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKRTTLSTLRTAKMEGVQEYVTAREGDVRSLP-----FG----- 185 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 185 (293)
++++|=.|+ +|.++..+++.+.+.| .+|+.++.++...+.+.+..... ..++.++..|+.+.. ..
T Consensus 6 ~k~vlVTGa-s~gIG~~~a~~L~~~G--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 6 KGTVIITGA-SSGVGLYAAKALAKRG--WHVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCEEEEEcC-CChHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 456777764 6778888888887664 68999998887665554443322 235788899987642 11
Q ss_pred CCcccEEEecchh
Q 022698 186 DNYFDVVVSAAFF 198 (293)
Q Consensus 186 ~~~fD~Iv~~~~~ 198 (293)
.++.|++|.|...
T Consensus 81 ~~~iD~li~nAg~ 93 (322)
T PRK07453 81 GKPLDALVCNAAV 93 (322)
T ss_pred CCCccEEEECCcc
Confidence 1458999998654
No 500
>PRK06114 short chain dehydrogenase; Provisional
Probab=76.10 E-value=47 Score=28.04 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHhhhcCCCcEEEEEeCCHH-HHHHHHHHHHhcCCCCceEEEEcCCCCCC-----C-----
Q 022698 116 VKTALDIGCGRGILLNAVATQFKKTGSLGRVVGLDCKKR-TTLSTLRTAKMEGVQEYVTAREGDVRSLP-----F----- 184 (293)
Q Consensus 116 ~~~vLDiG~G~G~~~~~l~~~~~~~~~~~~v~~vDis~~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 184 (293)
++++|=.| |+|.++..+++.+.+.| .+++.++.++. .++...+.....+ .++.++..|+.+.. .
T Consensus 8 ~k~~lVtG-~s~gIG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 8 GQVAFVTG-AGSGIGQRIAIGLAQAG--ADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC--CEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 45777776 56779999999887764 68999997653 3344434443333 34778888987532 0
Q ss_pred CCCcccEEEecchh
Q 022698 185 GDNYFDVVVSAAFF 198 (293)
Q Consensus 185 ~~~~fD~Iv~~~~~ 198 (293)
.-++.|.++.|...
T Consensus 83 ~~g~id~li~~ag~ 96 (254)
T PRK06114 83 ELGALTLAVNAAGI 96 (254)
T ss_pred HcCCCCEEEECCCC
Confidence 12568999988664
Done!