BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022699
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 179 SVIVSPVPPDF-SIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYY 237
SV V+ VP +I+ FG PK++ E +++ + P+ K +LI+++ E + YY
Sbjct: 120 SVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAP---PNQKTTLIDAS--EHDVDGKTYY 174
Query: 238 ELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT 292
+ EF V++ ++ RH + NG YTL A E W ++K L+TV DSF +T
Sbjct: 175 QFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKIT 229
>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis
thaliana GN=PPD3 PE=1 SV=2
Length = 247
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 164 IVAFGPPGSTGELNVSVIVSPVPPDFS-IEAFGGPKEVGEAVVRTITGSGRRP-DVKGSL 221
I AF P T NVS+ ++ + PDF+ +E+FG + E +V + S ++P V L
Sbjct: 119 ITAFYPQ-ETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKL 177
Query: 222 IESNLREDSLRSIKYYELEFRVESPSFQRHNI--AVCCTRNG---KLYTLNAQAPESVWP 276
I DS S +Y +E+ +++P R ++ A+ NG +LYT+ Q +
Sbjct: 178 I------DSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESA 231
Query: 277 EVKSELYTVADSF 289
E S++ SF
Sbjct: 232 EQSSKIQKTVKSF 244
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 85/236 (36%), Gaps = 60/236 (25%)
Query: 56 RRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEF 115
R+ LVGVGT ++ A T L P+S YS +D +G+ +
Sbjct: 60 RQALVGVGTLVATSIPA-----TLLLAEEIPKS--------------YSPFVDREDGYSY 100
Query: 116 IYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGE 175
YP W + +RA + + +R L N V+ + +I+E GP
Sbjct: 101 YYPSDW---REFDFRAHDSAFKDRYLQLQ--NVRVRFIPTEKNDIHE----VGP------ 145
Query: 176 LNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIK 235
+ V D F P +V +++E
Sbjct: 146 ------MEEVVYDLVKHKFAAPNQVATIY--------------------DMKERVEDGKN 179
Query: 236 YYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSL 291
YY E+ + +P + + A N + YTL A E W +VK +L VADS +
Sbjct: 180 YYTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKI 235
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 63/212 (29%)
Query: 103 YSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINE 162
+ ID +G+ F YP +W+ R A F R DP +++N
Sbjct: 109 FREYIDTFDGYSFKYPQNWIQ-----VRGAGADIFFR--DPVVLDEN------------- 148
Query: 163 PIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVR--------TITGSGRR 214
L+V S+E G P+EVG+ V+R T G R+
Sbjct: 149 -------------LSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQ 195
Query: 215 PDVKGSLIESNLREDSLRSIKYYELEFRVESPS-----------------FQRHNIAVCC 257
++ + S + +D YY++E ++S + + R +AV
Sbjct: 196 ANILST--SSRVADDGKL---YYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLG 250
Query: 258 TRNGKLYTLNAQAPESVWPEVKSELYTVADSF 289
N +LY++ Q PE V+ E + +L V DSF
Sbjct: 251 VENDRLYSIRLQTPEKVFLEEEKDLRRVMDSF 282
>sp|Q0TME7|ADD_CLOP1 Adenosine deaminase OS=Clostridium perfringens (strain ATCC 13124 /
NCTC 8237 / Type A) GN=add PE=3 SV=1
Length = 332
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 165 VAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIES 224
VAF + NV I P +E KEV E+V++ I + D+KG+LI S
Sbjct: 79 VAFELMEDASKENVKYIEIRFAPLLHLEKGMTQKEVIESVIKGIRKAEELYDIKGNLILS 138
Query: 225 NLREDSLRSI 234
LR S+ S+
Sbjct: 139 CLRHHSIDSV 148
>sp|Q8XHH8|ADD_CLOPE Adenosine deaminase OS=Clostridium perfringens (strain 13 / Type A)
GN=add PE=3 SV=1
Length = 332
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 165 VAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIES 224
VAF + NV I P +E KEV E+V++ I + D+KG+LI S
Sbjct: 79 VAFELMEDASKENVKYIEIRFAPLLHLEKGMTQKEVIESVIKGIRKAEELYDIKGNLILS 138
Query: 225 NLREDSLRSI 234
LR S+ S+
Sbjct: 139 CLRHHSIDSV 148
>sp|Q0SQ45|ADD_CLOPS Adenosine deaminase OS=Clostridium perfringens (strain SM101 / Type
A) GN=add PE=3 SV=1
Length = 332
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 165 VAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIES 224
VAF + NV I P +E KEV E+V++ I + D+KG+LI S
Sbjct: 79 VAFELMEDASKENVKYIEIRFAPLLHLEKGMTQKEVIESVIKGIRKAEEFYDIKGNLILS 138
Query: 225 NLREDSLRSI 234
LR S+ S+
Sbjct: 139 CLRHHSIDSV 148
>sp|P82715|PPD5_ARATH PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis
thaliana GN=PPD5 PE=1 SV=3
Length = 297
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 40/253 (15%)
Query: 54 FNRRLLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPIGGYSRCIDINEGF 113
+RR LV +G +S +++ + SG LK+ + DIN +
Sbjct: 52 LSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTM--------VDDIN-AY 102
Query: 114 EFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGST 173
+ YP + ++ L+++ E + ER P+ S + R + ++E + T
Sbjct: 103 SYAYPLDYPSEK-LVFKWVESRKPERYSSAAPL-----SPDARLRIVSERV------DLT 150
Query: 174 GELNVSVIVSPVPPDFSI----EAFGGPKEVGEAVVRT-----ITGSGRRPDVKGSLIES 224
L +S+ + P P+ + + KEV ++V+ +T S R + S++++
Sbjct: 151 DNLVISISIGP--PNSRLTSKEKKTWSAKEVADSVLSDKSALRVTSSQRLEE--SSVLDA 206
Query: 225 NLREDSLRSIKYYELEFR------VESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEV 278
+ + YYE R E+ RH I+ R+G LYT+NA W ++
Sbjct: 207 HASDIDGEPYWYYEYLVRKSPTKIAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKM 266
Query: 279 KSELYTVADSFSL 291
L SF L
Sbjct: 267 GPVLERAVGSFRL 279
>sp|O49292|PPD4_ARATH PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis
thaliana GN=PPD4 PE=1 SV=2
Length = 260
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 19/128 (14%)
Query: 172 STGELNVSVIVSPV-------PPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIES 224
S E +SVIV+PV D IE G P +V A + G +V+G ++ S
Sbjct: 145 SPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFGPEVIGE----NVEGKVLSS 200
Query: 225 NLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYT 284
N+ E R YY +F +E P H + +LY + W +L
Sbjct: 201 NVAEHDGR--LYY--QFELEPP----HVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKR 252
Query: 285 VADSFSLT 292
+A SF +
Sbjct: 253 IASSFRIV 260
>sp|Q64595|KGP2_RAT cGMP-dependent protein kinase 2 OS=Rattus norvegicus GN=Prkg2 PE=2
SV=1
Length = 762
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 104 SRCIDINEGFEFIYPDSWV----GDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQN 159
SR D+N+ EF + + V ++ L+ A K++F + LDP I V+ GR
Sbjct: 131 SRTYDLNKPPEFSFEKARVRKDSSEKKLITDALNKNQFLKRLDPQQIKDMVECMYGRNYQ 190
Query: 160 INEPIVAFGPPGS 172
IV G PG+
Sbjct: 191 QGSYIVKQGEPGN 203
>sp|Q7NFA1|ACSF_GLOVI Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
OS=Gloeobacter violaceus (strain PCC 7421) GN=acsF PE=3
SV=1
Length = 346
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 226 LREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTV 285
LR+ +L S K + L +++P FQRH + C N +L L+ ++P + P + + T+
Sbjct: 270 LRQTNLDSGKVFPLILDLDNPRFQRH-LDRCADLNLQLEALSGKSPLARLPVIAALAGTI 328
Query: 286 ADSFSL 291
A F L
Sbjct: 329 AQLFLL 334
>sp|Q6R2K2|SRF4_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana
GN=SRF4 PE=2 SV=1
Length = 687
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 81 LLGLSPESGRNLKLDVLYPIGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEF-ER 139
L+G E GRN+ + + G R + +++ +F P +W + A+ E+
Sbjct: 476 LVGYCSEQGRNMLVYEYFTSGSLHRFLHLSD--DFSKPLTWNTRIRIALGTAKAIEYLHE 533
Query: 140 SLDPPPINKNVKSSN 154
+ PP ++KN+KSSN
Sbjct: 534 TCSPPLVHKNIKSSN 548
>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis
sativus GN=PSBP PE=2 SV=1
Length = 263
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 177 NVSVIVSPVPPDFSIEAFGGPKEVGEAVV----------RTITGSGRRPDVKGSLIESNL 226
N+SVI++P SI+ FG P+E V +T + G PD ++ +N+
Sbjct: 135 NLSVIINPTDKK-SIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPD---AVATANI 190
Query: 227 REDSLRSIK---YY---ELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVW 275
E + ++ YY L + +H + +GKLY AQA + W
Sbjct: 191 LEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRW 245
>sp|Q7VIL1|ATPL_HELHP ATP synthase subunit c OS=Helicobacter hepaticus (strain ATCC 51449
/ 3B1) GN=atpE PE=3 SV=1
Length = 103
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 166 AFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESN 225
AFG S ++ S ++ I A GG +G A TI+G+ R P + G L+ +
Sbjct: 15 AFGAEVSGLDMIKSYSIAGAVIGLGIAALGGAIGMGHAAAATISGTARNPGISGKLLGTM 74
Query: 226 LREDSL 231
+L
Sbjct: 75 FIALAL 80
>sp|Q13237|KGP2_HUMAN cGMP-dependent protein kinase 2 OS=Homo sapiens GN=PRKG2 PE=1 SV=1
Length = 762
Score = 32.3 bits (72), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 104 SRCIDINEGFEFIYPDSWV----GDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQN 159
+R D+N+ EF + + V ++ L+ A K++F + LDP I V+ GR
Sbjct: 131 TRTYDLNKPPEFSFEKARVRKDSSEKKLITDALNKNQFLKRLDPQQIKDMVECMYGRNYQ 190
Query: 160 INEPIVAFGPPGS 172
I+ G PG+
Sbjct: 191 QGSYIIKQGEPGN 203
>sp|Q12114|CHS5_YEAST Chitin biosynthesis protein CHS5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHS5 PE=1 SV=1
Length = 671
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 147 NKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVR 206
NK V+ +N ++ +EP+ G P + I SP + IE PK+ E+V
Sbjct: 517 NKPVEDANEPVEDTSEPVEDAGEPVQETNEFTTDIASPRHQEEDIELEAEPKDATESVAV 576
Query: 207 TITGSGRRPDVKGSLIESNL 226
+ +P+ KGS E ++
Sbjct: 577 EPSNEDVKPEEKGSEAEDDI 596
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,381,653
Number of Sequences: 539616
Number of extensions: 5090756
Number of successful extensions: 11933
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 11907
Number of HSP's gapped (non-prelim): 36
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)