Query 022699
Match_columns 293
No_of_seqs 163 out of 304
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 3.9E-46 8.5E-51 342.0 17.9 156 101-292 107-285 (286)
2 PLN00067 PsbP domain-containin 100.0 1.9E-41 4.2E-46 310.8 17.8 198 54-291 43-263 (263)
3 PLN00042 photosystem II oxygen 100.0 1.2E-40 2.6E-45 306.1 17.9 154 100-291 89-259 (260)
4 PF01789 PsbP: PsbP; InterPro 100.0 1.2E-39 2.6E-44 284.8 14.2 155 100-292 20-175 (175)
5 PLN00066 PsbP domain-containin 100.0 4E-33 8.7E-38 257.7 17.0 150 101-292 90-259 (262)
6 PLN03152 hypothetical protein; 100.0 8.5E-28 1.8E-32 216.2 16.3 151 109-292 82-241 (241)
7 PF08786 DUF1795: Domain of un 98.1 0.00033 7.1E-09 58.1 15.8 103 175-289 27-130 (130)
8 COG5435 Uncharacterized conser 93.2 3.3 7.2E-05 36.1 13.0 112 166-292 26-142 (147)
9 PRK11615 hypothetical protein; 88.0 11 0.00025 33.9 11.7 89 197-291 96-184 (185)
10 PF07174 FAP: Fibronectin-atta 81.4 23 0.00049 34.1 11.1 21 104-124 110-130 (297)
11 PF10738 Lpp-LpqN: Probable li 78.8 35 0.00075 30.4 11.0 105 175-292 66-174 (175)
12 COG4784 Putative Zn-dependent 76.6 13 0.00028 37.1 8.1 43 250-293 373-416 (479)
13 PF12712 DUF3805: Domain of un 64.8 97 0.0021 27.1 10.8 129 103-291 1-130 (153)
14 smart00564 PQQ beta-propeller 33.2 49 0.0011 20.1 2.5 21 256-276 11-31 (33)
15 PF08006 DUF1700: Protein of u 29.8 32 0.00069 30.0 1.6 20 190-209 46-65 (181)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00 E-value=3.9e-46 Score=341.99 Aligned_cols=156 Identities=28% Similarity=0.454 Sum_probs=143.4
Q ss_pred CCceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEEE
Q 022699 101 GGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSV 180 (293)
Q Consensus 101 ~gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVSV 180 (293)
.||+.|+|+.|||+|+||.+|++++. .|++++|+|++ +.+|||||
T Consensus 107 ~~l~~y~D~~DGY~FlYP~GWi~V~~----------------------------------~G~DVvFrD~I-e~~ENVSV 151 (286)
T PLN00059 107 PVFREYIDTFDGYSFKYPQNWIQVRG----------------------------------AGADIFFRDPV-VLDENLSV 151 (286)
T ss_pred cccceeEcCCCCeEEeCCCCCeEecc----------------------------------CCCceEEeccC-ccccceEE
Confidence 58999999999999999999987532 37899999999 89999999
Q ss_pred EEeeCCC--CCCccccCCHHHHHHHHHHhHhcC----CCCCCccceEEEeeeeecccCCceEEEEEEEeeCC--------
Q 022699 181 IVSPVPP--DFSIEAFGGPKEVGEAVVRTITGS----GRRPDVKGSLIESNLREDSLRSIKYYELEFRVESP-------- 246 (293)
Q Consensus 181 vVsPv~~--~~sI~d~GspeeVa~~Ll~~~~~~----~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~-------- 246 (293)
+|+|++. +++|+|||+|+|||++|+++++.. ++|++++++||+|.+|++ .||++||+|||.++++
T Consensus 152 ~ISs~sss~~~sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~-~DGktYY~lEY~Vks~~~~n~~~~ 230 (286)
T PLN00059 152 EFSSPSSSKYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVA-DDGKLYYQVEVNIKSYANNNELAV 230 (286)
T ss_pred EEecCCcccCCChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEc-cCCcEEEEEEEEEEcCcccccccc
Confidence 9998873 679999999999999999999832 368889999999999975 5899999999999984
Q ss_pred ---------CcceEEEEEEEEeCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699 247 ---------SFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT 292 (293)
Q Consensus 247 ---------~~~RH~La~vaV~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl 292 (293)
+|.||+|++++|.|||||||++|+||+||+|+++.|++|++||+|.
T Consensus 231 ~~qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~ 285 (286)
T PLN00059 231 MPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE 285 (286)
T ss_pred cccccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeec
Confidence 5799999999999999999999999999999999999999999985
No 2
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=100.00 E-value=1.9e-41 Score=310.84 Aligned_cols=198 Identities=23% Similarity=0.397 Sum_probs=164.5
Q ss_pred cccc-eeehhhhhhHhhhhcccCCccccccCCCccccccccccccccC----CCceEEee-----------CCCceEEec
Q 022699 54 FNRR-LLVGVGTASLVAVGANFGGVTSFLLGLSPESGRNLKLDVLYPI----GGYSRCID-----------INEGFEFIY 117 (293)
Q Consensus 54 ~~RR-~llg~~s~~a~al~anf~G~ts~ll~~~~e~~~~~~ld~~~p~----~gf~~y~D-----------~~~GY~F~y 117 (293)
..|| +|+|+..+.++.+ +..++.-|++..+..+-|. .||..|.- ...||+|+|
T Consensus 43 ~~rr~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~Fly 111 (263)
T PLN00067 43 IHRRELLLGLALAPLILI-----------APEPPAEAREVEVGSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFIL 111 (263)
T ss_pred hHHHHHHhhhhhhhhhhc-----------cCCchhhhheehhhcccCCCCCCCceEEEecCCCCCcccccCCcccceEeC
Confidence 4566 7777655533332 2224455788777666443 36777762 267999999
Q ss_pred cCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCc--eEEeCCCCCCCCceEEEEEeeCC-----CCCC
Q 022699 118 PDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEP--IVAFGPPGSTGELNVSVIVSPVP-----PDFS 190 (293)
Q Consensus 118 P~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep--~v~F~p~~~~~~~nVSVvVsPv~-----~~~s 190 (293)
|.+|+++++ . |++|+++||..|.|| ++.|+|+. ++||||+|+|+. .+++
T Consensus 112 P~gW~~v~V---s------------------~~~sGnycqp~c~~p~~dv~F~D~~---dgnVSVIVSPV~r~t~k~~~s 167 (263)
T PLN00067 112 PPTWKQTRV---A------------------NILSGNYCQPKCAEPWVEVKFEDEK---QGKVQVVASPLIRLTNKPNAT 167 (263)
T ss_pred CCCCcCccc---c------------------ccccCccccccccCCCceEEEeCCC---CCCEEEEEecccccccCCCCC
Confidence 999998765 1 567789999999884 88999976 579999999984 4679
Q ss_pred ccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEEEEEEeCCEEEEEEeec
Q 022699 191 IEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQA 270 (293)
Q Consensus 191 I~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La~vaV~~GrLYTL~aqa 270 (293)
|+|||+|++|+++|.+.+++ +++++++||++++++. ||++||+|||.++.+++.||+|+++|+++||||||++|+
T Consensus 168 IeDlGsPeeVl~~Lg~~v~g---~~~~~~eLLeAs~re~--dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asa 242 (263)
T PLN00067 168 IEEIGSPEKLIASLGPFVTG---NSYDPDELLETSVEKI--GDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSA 242 (263)
T ss_pred hHHccCHHHHHHHhhHHhhc---CCCCCcceEEeeeEee--CCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecC
Confidence 99999999999999999984 3467789999999985 999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHhhhcccee
Q 022699 271 PESVWPEVKSELYTVADSFSL 291 (293)
Q Consensus 271 pE~rW~k~~~~Lr~vv~SFrv 291 (293)
+|+||.|+++.|++|++||+|
T Consensus 243 nEkRW~K~k~~l~~V~dSFsV 263 (263)
T PLN00067 243 SDKQWQSSEKTLKAILDSFQA 263 (263)
T ss_pred CHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999986
No 3
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=1.2e-40 Score=306.11 Aligned_cols=154 Identities=25% Similarity=0.398 Sum_probs=133.9
Q ss_pred CCCceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEE
Q 022699 100 IGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVS 179 (293)
Q Consensus 100 ~~gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVS 179 (293)
..||.+|. .|||+|+||++|+++++.. ..+++++|+|++ +.++|||
T Consensus 89 ~~gF~~y~--~dgY~FlyP~~W~~~ke~~-------------------------------~~G~dv~f~D~~-~~~eNVS 134 (260)
T PLN00042 89 NTGFLPYN--GDGFKLLVPSKWNPSKERE-------------------------------FPGQVLRFEDNF-DATSNLS 134 (260)
T ss_pred CCCCeEee--CCCeEEecCCCCccccccc-------------------------------cCCceEEeeccc-cccccEE
Confidence 57899995 4999999999999876522 236799999999 8999999
Q ss_pred EEEeeCCCCCCccccCCHHH----HHHHHHHhHhcCCC---CCCc------cceEEEeeeeecccCCceEEEEEEEeeCC
Q 022699 180 VIVSPVPPDFSIEAFGGPKE----VGEAVVRTITGSGR---RPDV------KGSLIESNLREDSLRSIKYYELEFRVESP 246 (293)
Q Consensus 180 VvVsPv~~~~sI~d~Gspee----Va~~Ll~~~~~~~~---g~~~------~a~Li~A~~re~~~dG~~YY~~Ey~v~s~ 246 (293)
|+|+|++ +.+|+|||+|+| |++.|.++.+ +++ +.++ +++||++++|+. ||++||+|||.++++
T Consensus 135 V~Ispt~-k~sI~dlGsPee~l~~vgylL~kq~~-a~~t~s~~Gf~p~~vata~Lleas~re~--dGk~YY~lE~~~~~a 210 (260)
T PLN00042 135 VMVTPTD-KKSITDYGSPEEFLSKVSYLLGKQAY-SGETASEGGFDANAVATAAVLESSTQEV--GGKPYYYLSVLTRTA 210 (260)
T ss_pred EEEecCC-cCCHhhcCCHHHHHHHHHHHHHhhhc-cCccccccCcCcccccceeEEEeeeEEe--CCeEEEEEEEEEecC
Confidence 9999997 579999999999 6777777776 333 2333 679999999975 999999999999988
Q ss_pred C---cceEEEEEEEEeCCEEEEEEeecCCCCchhh-HHHHHhhhcccee
Q 022699 247 S---FQRHNIAVCCTRNGKLYTLNAQAPESVWPEV-KSELYTVADSFSL 291 (293)
Q Consensus 247 ~---~~RH~La~vaV~~GrLYTL~aqapE~rW~k~-~~~Lr~vv~SFrv 291 (293)
+ +.||+|+++||.+||||||++|+||+||.|+ ++.|++|++||+|
T Consensus 211 d~d~~~RH~LatatV~~GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV 259 (260)
T PLN00042 211 DGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV 259 (260)
T ss_pred CCCCCCceEEEEEEEECCEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence 6 7999999999999999999999999999998 5589999999997
No 4
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=100.00 E-value=1.2e-39 Score=284.76 Aligned_cols=155 Identities=41% Similarity=0.699 Sum_probs=137.7
Q ss_pred CCCceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEE
Q 022699 100 IGGYSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVS 179 (293)
Q Consensus 100 ~~gf~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVS 179 (293)
..||++|.|+.+||+|.||.+|.+++. .+.++.|+||. +.++||+
T Consensus 20 ~~~~~~y~d~~~~y~f~~P~gW~~~~~----------------------------------~G~~v~f~d~~-~~~~nvs 64 (175)
T PF01789_consen 20 STGFQPYTDSDDGYSFLYPSGWEEVDV----------------------------------SGADVVFRDPI-DADENVS 64 (175)
T ss_dssp -SSEEEEEECTTTEEEEEETTEEEEES----------------------------------TTEEEEEEETT-ETTSEEE
T ss_pred CCCceEEEcCCCCEEEECCCCCeecCC----------------------------------CCeEEEEECcc-cccceEE
Confidence 478999999999999999999965322 36789999999 7889999
Q ss_pred EEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCC-cceEEEEEEEE
Q 022699 180 VIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPS-FQRHNIAVCCT 258 (293)
Q Consensus 180 VvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~-~~RH~La~vaV 258 (293)
|+|+|++.+++|+|||+|++||++|++.++ .+++.++.++||++.+++. +|++||+|||.+++++ +.||+|+++++
T Consensus 65 V~v~p~~~~~sl~~lGs~~~va~~l~~~~~-~~~~~~~~a~li~a~~~~~--~g~~yY~~Ey~~~~~~~~~rh~l~~~tv 141 (175)
T PF01789_consen 65 VVVSPVPKDFSLEDLGSPEEVAERLLNGEL-ASPGSGREAELISASEREV--DGKTYYEYEYTVQSPNEGRRHNLAVVTV 141 (175)
T ss_dssp EEEEE-STS-SGGGG-SHHHHHHHHHHHCC-CHCTSSEEEEEEEEEEEEE--TTEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEecCCcCchhhcCCHHHHHHHHhhhhc-ccccCCcceEEEEeeeeec--CCccEEEEEEEeccCCCcccEEEEEEEE
Confidence 999999987899999999999999999987 4555568899999999986 8999999999999998 99999999999
Q ss_pred eCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699 259 RNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT 292 (293)
Q Consensus 259 ~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl 292 (293)
.+||||||++||||++|+++++.|++|++||+|.
T Consensus 142 ~~g~lY~l~~~a~e~~w~k~~~~l~~iv~SF~v~ 175 (175)
T PF01789_consen 142 KNGKLYTLTAQAPESRWDKVEPKLRKIVDSFRVY 175 (175)
T ss_dssp ETTEEEEEEEEEEHHHHHTCHHHHHHHHHC-EE-
T ss_pred ECCEEEEEEEEcCHHHHHHHHHHHHHHHhcEEeC
Confidence 9999999999999999999999999999999984
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=100.00 E-value=4e-33 Score=257.72 Aligned_cols=150 Identities=20% Similarity=0.363 Sum_probs=125.0
Q ss_pred CCceEEeeC-------------CCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEe
Q 022699 101 GGYSRCIDI-------------NEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAF 167 (293)
Q Consensus 101 ~gf~~y~D~-------------~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F 167 (293)
.||.+|.-+ ..+|+|+||.+|.++.+ . +.+ + .-.|.+..|
T Consensus 90 ~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW~ev~V---S---~~d------~---------------gg~~vd~Rf 142 (262)
T PLN00066 90 NGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPV---S---IAD------L---------------GGTEIDLRF 142 (262)
T ss_pred cceEEEecCccccCcCCCCccccCCeEEECCCCCeEeec---c---ccc------C---------------CCCceEEEe
Confidence 678888854 57899999999987654 1 011 0 112345555
Q ss_pred CCCCCCCCceEEEEEeeCC-------CCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEE
Q 022699 168 GPPGSTGELNVSVIVSPVP-------PDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELE 240 (293)
Q Consensus 168 ~p~~~~~~~nVSVvVsPv~-------~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~E 240 (293)
.++ .++||+|+|+|++ .+++|+|||+|++|++.|++++++.+ .++++|+++++++. ||++||+||
T Consensus 143 ~~~---~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~---~~e~eLl~a~~re~--dGktYY~~E 214 (262)
T PLN00066 143 ASD---KEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEP---VEEGKVLSMEVAEH--SGRTYYQFE 214 (262)
T ss_pred ccC---CCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCC---ccccceeEeeeeec--CCcEEEEEE
Confidence 554 4799999999996 57899999999999999999988443 36789999999875 999999999
Q ss_pred EEeeCCCcceEEEEEEEEeCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699 241 FRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT 292 (293)
Q Consensus 241 y~v~s~~~~RH~La~vaV~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl 292 (293)
| .||+|+++||.+||||||++|+||+||++++++|++|++||+|+
T Consensus 215 ~-------~rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~dSF~V~ 259 (262)
T PLN00066 215 L-------PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVV 259 (262)
T ss_pred E-------eCceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHhhceeee
Confidence 9 28999999999999999999999999999999999999999986
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.95 E-value=8.5e-28 Score=216.19 Aligned_cols=151 Identities=25% Similarity=0.309 Sum_probs=114.0
Q ss_pred CCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCc-eEEeCCCCCCCCceEEEEEeeCC-
Q 022699 109 INEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEP-IVAFGPPGSTGELNVSVIVSPVP- 186 (293)
Q Consensus 109 ~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep-~v~F~p~~~~~~~nVSVvVsPv~- 186 (293)
-.+||+.-||.++...-+ +|.+. +...=+.-+-...+ .+.|..|. ++|||||+|+|++
T Consensus 82 ~g~gf~~~~pp~f~di~e--------~~~~~----------~g~~~yg~~akp~~~~aRf~s~D--~sEnVSVVIspv~~ 141 (241)
T PLN03152 82 YGDGFSIRVPPSFEDIME--------PEDYN----------AGLSLYGDKAKPRTFAARFASPD--GSEVLSVVIRPSNQ 141 (241)
T ss_pred hCCceEEeCCCChhhhcC--------hhhcc----------cccceecCCCCCcceeeeecCCC--CCceEEEEEecCcc
Confidence 589999999999964311 22211 11111222222233 34587665 6899999999998
Q ss_pred ------CCCCccccCCHHHHHHHHHHhHhcCCCCCCc-cceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEEEEEEe
Q 022699 187 ------PDFSIEAFGGPKEVGEAVVRTITGSGRRPDV-KGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTR 259 (293)
Q Consensus 187 ------~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~-~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La~vaV~ 259 (293)
.+++|+|||+|+|||+.|+ |.+..+ .+..++. +++ .||++||.|||.++ .||+|++|+|.
T Consensus 142 LK~tfle~kDLtDLGsp~EVgkv~v------P~g~~~~saR~iel-~~E--~dGKtYY~lEy~v~----~RH~LaTVaVs 208 (241)
T PLN03152 142 LKITFLEAKDITDLGSLKEAAKIFV------PGGATLYSARTIKV-KEE--EGIRTYYFYEFGRD----EQHVALVATVN 208 (241)
T ss_pred ccccccccCChhHcCCHHHHHHhhC------CCcccccccceeee-eee--cCCceeEEEEEEeC----CcEEEEEEEEc
Confidence 5789999999999997765 443111 3445554 345 49999999999986 79999999999
Q ss_pred CCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699 260 NGKLYTLNAQAPESVWPEVKSELYTVADSFSLT 292 (293)
Q Consensus 260 ~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl 292 (293)
+||||||+++++|+||+|++++|+++++||+|+
T Consensus 209 rGKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~ 241 (241)
T PLN03152 209 SGKAYIAGATAPESKWDDDGVKLRSAAISLTVL 241 (241)
T ss_pred CCeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence 999999999999999999999999999999985
No 7
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=98.07 E-value=0.00033 Score=58.06 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=77.7
Q ss_pred CceEEEEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEE
Q 022699 175 ELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIA 254 (293)
Q Consensus 175 ~~nVSVvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La 254 (293)
..|+.|+-.+++.+ -++++..++.++.+-+.-+ .-++++...-+ .+|.+-+.+||.-...+..-|...
T Consensus 27 ~~slvIsR~~l~~g------~tl~~~~~~q~~~l~~~l~----~~~~~~~~~~~--l~~~~a~~l~~~~~~~g~~v~Q~q 94 (130)
T PF08786_consen 27 GPSLVISRDPLPDG------ETLEDYLQRQLAQLRKQLP----GFQLVERQPIT--LGGRPARELEYSFRSGGQPVYQRQ 94 (130)
T ss_dssp -EEEEEEEE---TT------S-HHHHHHHHHHHHHCCST----T-EEEEEEEEE--ETTEEEEEEEEEEEETTCEEEEEE
T ss_pred cceEEEEeccCCCC------CCHHHHHHHHHHHHHhhCC----CcEEEeeEEEE--eCCCCeEEEEEEEeeCCEEEEEEE
Confidence 34555555566644 4677888888877752322 24777765554 589999999999998888889988
Q ss_pred EEEEeC-CEEEEEEeecCCCCchhhHHHHHhhhccc
Q 022699 255 VCCTRN-GKLYTLNAQAPESVWPEVKSELYTVADSF 289 (293)
Q Consensus 255 ~vaV~~-GrLYTL~aqapE~rW~k~~~~Lr~vv~SF 289 (293)
++...+ +++|+|+.+++....+..++.++.|++||
T Consensus 95 ~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf 130 (130)
T PF08786_consen 95 AAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAILKSF 130 (130)
T ss_dssp EEEEEC-CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred EEEEECCCEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 888887 99999999999999999999999999998
No 8
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=93.22 E-value=3.3 Score=36.09 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=74.6
Q ss_pred EeCCCCCCCCceEEEEEe--eCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEe
Q 022699 166 AFGPPGSTGELNVSVIVS--PVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRV 243 (293)
Q Consensus 166 ~F~p~~~~~~~nVSVvVs--Pv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v 243 (293)
.+++++ ..-+|.+|+ |+..+-. -.+..++.+..+.+.-++ -++..-.+-+ ++|..--..+|.-
T Consensus 26 ~~~~~g---t~~~sfvIsRd~~~~g~~------~~~y~~rql~~l~k~Lpg----y~~~~~~e~~--v~~~aa~~~~y~w 90 (147)
T COG5435 26 VSGDNG---TSGFSFVISRDPLEPGDT------FPEYVQRQLALLRKQLPG----YELHHRREIE--VGGAAAPLLDYQW 90 (147)
T ss_pred EecCCC---cceeEEEEecCCCCCCCc------HHHHHHHHHHHHHhhCCC----eEEeeccccc--cCccccceeEEEe
Confidence 344554 356666665 4443322 234556666555534333 2555544333 6888888888887
Q ss_pred eCC--Cc-ceEEEEEEEEeCCEEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699 244 ESP--SF-QRHNIAVCCTRNGKLYTLNAQAPESVWPEVKSELYTVADSFSLT 292 (293)
Q Consensus 244 ~s~--~~-~RH~La~vaV~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl 292 (293)
.++ ++ .-|.+.++.-+++++-+|+++++-.-=++.+....+++.||..-
T Consensus 91 ~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p~ 142 (147)
T COG5435 91 TSPEGEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWEQVIQSFVPN 142 (147)
T ss_pred ecCCCCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 774 33 33566665557889999999999999999999999999999763
No 9
>PRK11615 hypothetical protein; Provisional
Probab=87.99 E-value=11 Score=33.90 Aligned_cols=89 Identities=9% Similarity=0.118 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEEEEEEeCCEEEEEEeecCCCCch
Q 022699 197 PKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIAVCCTRNGKLYTLNAQAPESVWP 276 (293)
Q Consensus 197 peeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La~vaV~~GrLYTL~aqapE~rW~ 276 (293)
.+..+.+|+.+-...-+ .-.++.-+.-+ ++|++++.++=.+...+..--+-.+++..++||-||.+..|.+.-.
T Consensus 96 Ld~la~rl~~qQr~rdp----~lqvvsnK~i~--i~G~~~qQLDS~~t~~Gqk~~SSvvL~~v~~rl~tlQitlpA~nqq 169 (185)
T PRK11615 96 LAVLAKRLEDQQRSRDP----QLQVVTNKAIE--LKGHKLQQLDSIISAKGQTAYSSVVLGKVDNQLLTMQITLPADNQQ 169 (185)
T ss_pred HHHHHHHHHHHHHhhCc----CceeecceeEE--ECCeeeEEeeeeeecCCceEEEEEEEEeeCCeEEEEEEecCCCCHH
Confidence 46677888776552221 13455544443 6999999999888877666666666777899999999999999988
Q ss_pred hhHHHHHhhhcccee
Q 022699 277 EVKSELYTVADSFSL 291 (293)
Q Consensus 277 k~~~~Lr~vv~SFrv 291 (293)
+....-+.|+++..+
T Consensus 170 qaq~~ae~ii~tl~~ 184 (185)
T PRK11615 170 QAQTTAENIINTLVI 184 (185)
T ss_pred HHHHHHHHHHhheec
Confidence 988899999988764
No 10
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=81.41 E-value=23 Score=34.08 Aligned_cols=21 Identities=29% Similarity=0.754 Sum_probs=18.2
Q ss_pred eEEeeCCCceEEeccCCCccc
Q 022699 104 SRCIDINEGFEFIYPDSWVGD 124 (293)
Q Consensus 104 ~~y~D~~~GY~F~yP~~W~~~ 124 (293)
-++.|..-||+|+.|.+|+..
T Consensus 110 grvdn~~gGFS~vvP~GW~~S 130 (297)
T PF07174_consen 110 GRVDNAAGGFSYVVPAGWVES 130 (297)
T ss_pred ccccccccceEEeccCCcccc
Confidence 477788999999999999864
No 11
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=78.78 E-value=35 Score=30.42 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=65.4
Q ss_pred CceEEEEEeeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCCcceEEEE
Q 022699 175 ELNVSVIVSPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPSFQRHNIA 254 (293)
Q Consensus 175 ~~nVSVvVsPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~~~RH~La 254 (293)
.-|+-|+|..+..+++ |+|+.+.=-..+. ..++ .+-++++.-+ .+|-+=+.+|-.-+..+..+|...
T Consensus 66 ~Pnavv~V~kL~G~~D------p~e~l~~a~~d~~-~l~g----~~~~~~s~~~--~~GfpS~~i~GtY~~~g~~~~~~~ 132 (175)
T PF10738_consen 66 PPNAVVTVSKLTGDFD------PAEALEHAPADAQ-NLPG----FRELDGSPSD--FSGFPSSQIEGTYDKDGMRLHTSQ 132 (175)
T ss_pred CCceEEEEEeccCCCC------HHHHHHhchhhHh-hCcC----cccccCCccc--cCCCceeEEEEEEeeCCEEeEeEE
Confidence 4678888888775543 5555443222222 2222 2344443332 478888888844444444555544
Q ss_pred EEEE--eCC--EEEEEEeecCCCCchhhHHHHHhhhccceee
Q 022699 255 VCCT--RNG--KLYTLNAQAPESVWPEVKSELYTVADSFSLT 292 (293)
Q Consensus 255 ~vaV--~~G--rLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl 292 (293)
...| .++ +|..|++++.+.+=....+..+.|++.|+|.
T Consensus 133 r~VV~~~~~~~Ylvqltvt~~~~qa~~~~~a~~aI~~g~~It 174 (175)
T PF10738_consen 133 RTVVIPGDDQRYLVQLTVTTTADQAVALADATEAIDEGFTIT 174 (175)
T ss_pred EEEEEeCCCcEEEEEEEeeccccchhhhhhHHHHHHcCCEec
Confidence 4443 333 6677888899999999999999999999985
No 12
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=76.60 E-value=13 Score=37.13 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=29.9
Q ss_pred eEEEEEEEE-eCCEEEEEEeecCCCCchhhHHHHHhhhccceeeC
Q 022699 250 RHNIAVCCT-RNGKLYTLNAQAPESVWPEVKSELYTVADSFSLTS 293 (293)
Q Consensus 250 RH~La~vaV-~~GrLYTL~aqapE~rW~k~~~~Lr~vv~SFrvl~ 293 (293)
|-.+=++.+ .+++.|-|-.-+|-..- ..++.+..+..|||.+.
T Consensus 373 ~w~fdvaVI~~g~rvyrfltavp~gs~-~l~~~a~sv~~SFR~lt 416 (479)
T COG4784 373 RWQFDVAVIRAGDRVYRFLTAVPKGST-ALEPRANSVRRSFRPLT 416 (479)
T ss_pred cccceEEEEEeCCEEEEEEEecccCcc-hhhHHHHHHHhhcccCC
Confidence 334444444 47899999888876543 34458899999999863
No 13
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=64.81 E-value=97 Score=27.08 Aligned_cols=129 Identities=17% Similarity=0.204 Sum_probs=57.1
Q ss_pred ceEEeeCCCceEEeccCCCccccchhhhhhhhhhhccCCCCCCCCCCCCCCCcccccccCceEEeCCCCCCCCceEEEEE
Q 022699 103 YSRCIDINEGFEFIYPDSWVGDQTLLYRAAEKSEFERSLDPPPINKNVKSSNGRRQNINEPIVAFGPPGSTGELNVSVIV 182 (293)
Q Consensus 103 f~~y~D~~~GY~F~yP~~W~~~~~l~~~~~~~~e~~~s~dpp~~~~~~~s~d~r~~~v~ep~v~F~p~~~~~~~nVSVvV 182 (293)
++-|..+..=|+..||.+|..=. |. |---+|.+|. .=..|..+
T Consensus 1 mkKfiSpg~WFS~~YP~~W~EfE----------------D~------------------E~sflFYnp~-~WTGNfRI-- 43 (153)
T PF12712_consen 1 MKKFISPGAWFSMEYPADWNEFE----------------DG------------------EGSFLFYNPD-QWTGNFRI-- 43 (153)
T ss_dssp -EEEE-GGG-EEEEE-TT-EEE-------------------------------------TTEEEEE-SS-S---EEEE--
T ss_pred CCcccCCCceEEEecCCCcchhc----------------cC------------------CcceEEEChH-HhcCceEE--
Confidence 35677888889999999995411 10 1234677776 45677765
Q ss_pred eeCCCCCCccccCCHHHHHHHHHHhHhcCCCCCCccceEEEeeeeecccCCceEEEEEEEeeCCC-cceEEEEEEEEeCC
Q 022699 183 SPVPPDFSIEAFGGPKEVGEAVVRTITGSGRRPDVKGSLIESNLREDSLRSIKYYELEFRVESPS-FQRHNIAVCCTRNG 261 (293)
Q Consensus 183 sPv~~~~sI~d~GspeeVa~~Ll~~~~~~~~g~~~~a~Li~A~~re~~~dG~~YY~~Ey~v~s~~-~~RH~La~vaV~~G 261 (293)
++..+ .-...|...+++.+... ..++++....- .--|.-|.--+... +.-|.. |+-.++
T Consensus 44 Sayk~--------~~~~ygk~~i~~EL~en----~~a~~vkvg~~------~caYs~E~f~eeg~~YtsH~W--vtg~~~ 103 (153)
T PF12712_consen 44 SAYKG--------GSAQYGKECIRQELKEN----PSAKLVKVGNW------ECAYSKEMFQEEGAYYTSHLW--VTGEGD 103 (153)
T ss_dssp EEEE----------STTHHHHHHHHHHHH-----TT-EEEEETTE------EEEEEEEEEEETTEEEEEEEE--EEEETT
T ss_pred EEEec--------ccccchHHHHHHHHHhC----CCcceEEeccE------EEEEEhhhhhccCeeEEEEEE--EEecCc
Confidence 44431 11123444444444111 11344443221 11233332211111 124554 556788
Q ss_pred EEEEEEeecCCCCchhhHHHHHhhhcccee
Q 022699 262 KLYTLNAQAPESVWPEVKSELYTVADSFSL 291 (293)
Q Consensus 262 rLYTL~aqapE~rW~k~~~~Lr~vv~SFrv 291 (293)
..|.+..+.+-.. .....+.|+.|..|
T Consensus 104 ~sfeCSFTv~kg~---~~~~aE~iiasL~v 130 (153)
T PF12712_consen 104 VSFECSFTVPKGE---SVKEAEEIIASLEV 130 (153)
T ss_dssp EEEEEEEEEETT------HHHHHHHHH-EE
T ss_pred eEEEEEEEccCCC---CcchHHHHHhhhee
Confidence 8888888776542 33455666777654
No 14
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=33.19 E-value=49 Score=20.05 Aligned_cols=21 Identities=33% Similarity=0.756 Sum_probs=17.8
Q ss_pred EEEeCCEEEEEEeecCCCCch
Q 022699 256 CCTRNGKLYTLNAQAPESVWP 276 (293)
Q Consensus 256 vaV~~GrLYTL~aqapE~rW~ 276 (293)
++-.+|+||.+++...+.+|.
T Consensus 11 ~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 11 VGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEcCCCEEEEEEcccCcEEEE
Confidence 445689999999999999996
No 15
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=29.80 E-value=32 Score=30.00 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=16.5
Q ss_pred CccccCCHHHHHHHHHHhHh
Q 022699 190 SIEAFGGPKEVGEAVVRTIT 209 (293)
Q Consensus 190 sI~d~GspeeVa~~Ll~~~~ 209 (293)
=+++||+|+++|+.++.+..
T Consensus 46 ii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 46 IIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHcCCHHHHHHHHHHhhh
Confidence 46789999999999987543
Done!