BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022700
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 130 KREYNVKQEELILYGQSVGSGPTLHLASR--LQKLRGVVLHSAILSGIRVLYPVKMTLWF 187
+R + E +IL G S G LH A R Q L GV+ + P L
Sbjct: 108 QRAKGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVL-------ALSTYAPTFDDLAL 160
Query: 188 DIYKNIDKIRHVNCPVLVIHGTNDDIVDLSHGK 220
D RH PVL +HG+ DD+VD + G+
Sbjct: 161 DE-------RHKRIPVLHLHGSQDDVVDPALGR 186
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 170 AILSGIRVLYPVKMTLWFDIYKNIDKIRHVNCPVLVIHGTNDDIVDLSHGKRLWELSKEK 229
AI S Y V D +++ +R P L++HGT D+I+ + R + + +
Sbjct: 189 AIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVPE 248
Query: 230 YDPLWVKGGGHCNLETYPEYIK-HLRKFI 257
D + V+G H L T+ + + L+ F+
Sbjct: 249 ADYVEVEGAPHGLLWTHADEVNAALKTFL 277
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 93/236 (39%), Gaps = 52/236 (22%)
Query: 41 KNMDCHLLETKNGNKIVA-------TFWRHPFARFT----LLYSHGNAADLGQMLELFIE 89
++MD L T + +K +A TF R A +++ HG AD +L L
Sbjct: 29 QHMDSPDLGTDDDDKAMADIMTRKLTFGRRGAAPGEATSLVVFLHGYGADGADLLGLAEP 88
Query: 90 LRAHL--------------RVNIMSYDY------SGYGASTGKPSEFNTYYDIEAVYNCL 129
L HL R N + + G + D++A +
Sbjct: 89 LAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAAAEGMAAAARDLDAFLDER 148
Query: 130 KREYNVKQEELILYGQSVGSGPTLHLASR-LQKLRGVVLHSAILSGIRVLYPVKMTLWFD 188
E + E L L G S G+ LH+A R +++ G+V S R+L P ++
Sbjct: 149 LAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSG-----RLLAPERLA---- 199
Query: 189 IYKNIDKIRHVNCPVLVIHGTNDDIV---DLS-HGKRLWELSKEKYDPLWVKGGGH 240
++ R PVL++HG D +V D+S G+ L E Y + +KG GH
Sbjct: 200 -----EEARS-KPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHV-MKGTGH 248
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 21/125 (16%)
Query: 121 DIEAVYNCLKREYNVKQEELILYGQSVGSGPTLHLASR-LQKLRGVVLHSAILSGIRVLY 179
D++A ++ E + E L L G S G+ LH+A R +++ G+V S R+L
Sbjct: 140 DLDAFHDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSG-----RLLA 194
Query: 180 PVKMTLWFDIYKNIDKIRHVNCPVLVIHGTNDDIV---DLS-HGKRLWELSKEKYDPLWV 235
P ++ ++ R PVL++HG D +V D+S G+ L E Y + +
Sbjct: 195 PERLA---------EEARS-KPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHV-M 243
Query: 236 KGGGH 240
KG GH
Sbjct: 244 KGTGH 248
>pdb|2RON|A Chain A, The External Thioesterase Of The Surfactin-Synthetase
pdb|2K2Q|B Chain B, Complex Structure Of The External Thioesterase Of The
Surfactin-Synthetase With A Carrier Domain
Length = 242
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 87 FIELRAHLR--VNIMSYDYSGYGASTGKPSEFNTYYDIEAVYNCLKREYNVKQEE-LILY 143
F L A L+ +++ + G+G + E D+E + + K+E N++ + +L+
Sbjct: 29 FRPLHAFLQGECEMLAAEPPGHGTNQTSAIE-----DLEELTDLYKQELNLRPDRPFVLF 83
Query: 144 GQSVGSGPTLHLASRLQKLRGVVLHSAILSGIR 176
G S+G T LA +L++ G+ + I+S I+
Sbjct: 84 GHSMGGMITFRLAQKLER-EGIFPQAVIISAIQ 115
>pdb|3LLC|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_002548124.1)
From Agrobacterium Vitis S4 At 1.80 A Resolution
Length = 270
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 41 KNMDCHLLETKNGN--KIVATFWRHPFA--RFTLLYSHGNAADLGQMLELFIE-LRAHLR 95
+ ++ H + G+ + +A R P R T ++ G +D L + L A L
Sbjct: 7 RPIETHAITVGQGSDARSIAALVRAPAQDERPTCIWLGGYRSDXTGTKALEXDDLAASLG 66
Query: 96 VNIMSYDYSGYGASTGKPSEFNTYYDIEAVYNCLKREYNVKQEELILYGQSVGSGPTLHL 155
V + +DYSG+GAS G + +E L + K E+ IL G S G L L
Sbjct: 67 VGAIRFDYSGHGASGGAFRDGTISRWLEEALAVLD---HFKPEKAILVGSSXGGWIALRL 123
Query: 156 ASRLQKLRGVVLHSAILSGIRVLYPVK 182
+Q+L+ + +SG ++ P
Sbjct: 124 ---IQELKARHDNPTQVSGXVLIAPAP 147
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 178 LYPVKMTLWFDIYKNIDK-IRHVNCPVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLWVK 236
++P W D + D+ I+ + L+IHG D +V LS RL EL ++ +
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGR 249
Query: 237 GGGHCNLETYPEYIKHLRKFIN 258
G +E + + + +F N
Sbjct: 250 CGHWTQIEQTDRFNRLVVEFFN 271
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 178 LYPVKMTLWFDIYKNIDK-IRHVNCPVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLWVK 236
++P W D + D+ I+ + L+IHG D +V LS RL EL ++ +
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELIDRAQLHVFGR 249
Query: 237 GGGHCNLETYPEYIKHLRKFIN 258
G +E + + + +F N
Sbjct: 250 CGHWTQIEQTDRFNRLVVEFFN 271
>pdb|3FLB|A Chain A, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
Biosynthetic Pathway - Form 2
Length = 267
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 155 LASRLQKLRGVVLHSAILSGIRVLYPVKMTLWFDIYKNIDKIRH-----VNCPVLVIHGT 209
L + L+KL G +A+L+ +L V + D Y+ ++ RH V+CPV V G
Sbjct: 142 LVAELRKLGGS--DAAMLADPELLAMVLPAIRSD-YRAVETYRHEPGRRVDCPVTVFTGD 198
Query: 210 NDDIVDLSHGKRLWELSKEKYDPLWVKGGGH 240
+D V + R WE L V GGH
Sbjct: 199 HDPRVSVGEA-RAWEEHTTGPADLRVLPGGH 228
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 184 TLWFDIYKNIDKIRHVNCPVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLWVKGGGHCNL 243
T W+ ++ I ++ P L++HGT D + + + R++ + + + V+G H L
Sbjct: 204 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 261
Query: 244 ETYPEYI 250
T+ E +
Sbjct: 262 WTHAEEV 268
>pdb|3FLA|A Chain A, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
BIOSYNTHETIC Pathway - Form 1
pdb|3FLA|B Chain B, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
BIOSYNTHETIC Pathway - Form 1
Length = 267
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 155 LASRLQKLRGVVLHSAILSGIRVLYPVKMTLWFDIYKNIDKIRH-----VNCPVLVIHGT 209
L + L+KL G +A L+ +L V + D Y+ ++ RH V+CPV V G
Sbjct: 142 LVAELRKLGGS--DAAXLADPELLAXVLPAIRSD-YRAVETYRHEPGRRVDCPVTVFTGD 198
Query: 210 NDDIVDLSHGKRLWELSKEKYDPLWVKGGGH 240
+D V + R WE L V GGH
Sbjct: 199 HDPRVSVGEA-RAWEEHTTGPADLRVLPGGH 228
>pdb|1PY9|A Chain A, The Crystal Structure Of An Autoantigen In Multiple
Sclerosis
Length = 116
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 37 VTADKNMDCHLLETKNGNKIVATFWRHPFARFTLLYSHGNAADLGQ----------MLEL 86
V + + C + KN + ++R PF+R LY +G D Q + E
Sbjct: 15 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKET 74
Query: 87 FIELRAHLRV-NIMSYDYSGY 106
E + LR+ N+ D GY
Sbjct: 75 ISEGKVTLRIQNVRFSDEGGY 95
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 184 TLWFDIYKNIDKIRHVNCPVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLWVKGGGHCNL 243
T W+ ++ I ++ P L++HGT D + + + R++ + + + V+G H L
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 260
Query: 244 ETYPEYIK 251
T+ E +
Sbjct: 261 WTHAEEVN 268
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 184 TLWFDIYKNIDKIRHVNCPVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLWVKGGGHCNL 243
T W+ ++ I ++ P L++HGT D + + + R++ + + + V+G H L
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 260
Query: 244 ETYPEYIK 251
T+ E +
Sbjct: 261 WTHAEEVN 268
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 184 TLWFDIYKNIDKIRHVNCPVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLWVKGGGHCNL 243
T W+ ++ I ++ P L++HGT D + + + R++ + + + V+G H L
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 260
Query: 244 ETYPEYIK 251
T+ E +
Sbjct: 261 WTHAEEVN 268
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 96/237 (40%), Gaps = 54/237 (22%)
Query: 51 KNGNKIVATFWRHPFARF--TLLYSHGNAADLGQMLELFIELRAHLR-VNIMS--YDYSG 105
++G ++V T PF + HG A+ + L E+ LR NI S +D++G
Sbjct: 29 RDGLQLVGT-REEPFGEIYDMAIIFHGFTAN--RNTSLLREIANSLRDENIASVRFDFNG 85
Query: 106 YGASTGKPSEFNTYYDIE---AVYNCLKREYNVKQEELILYGQSVGSGPTLHLASRLQKL 162
+G S GK +IE A+ N +K + +V+ + L G S G LA L
Sbjct: 86 HGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRN--IYLVGHSQGGVVASMLAGLYPDL 143
Query: 163 -RGVVL--HSAILSG----------------IRVLYPVKMTLWFDIYKNIDK---IRHVN 200
+ VVL +A L G I P K Y I + I V+
Sbjct: 144 IKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVS 203
Query: 201 C----PVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLW-------VKGGGHCNLETY 246
PV +IHGT+D +V + K KYD ++ ++G HC ++Y
Sbjct: 204 AQFTKPVCLIHGTDDTVVSPNASK--------KYDQIYQNSTLHLIEGADHCFSDSY 252
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 186 WFDIYKNIDKIRHVNCPVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLWVKGGGHCNLET 245
W + +DK+ + + P++ NDD W +E YD L GHC L +
Sbjct: 186 WDTLDSTLDKVANTSVPLIAFTANNDD----------WVKQEEVYDMLAHIRTGHCKLYS 235
Query: 246 -------YPEYIKHLRKFINAMEKLSI 265
E + LR F ++ K +I
Sbjct: 236 LLGSSHDLGENLVVLRNFYQSVTKAAI 262
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 96/237 (40%), Gaps = 54/237 (22%)
Query: 51 KNGNKIVATFWRHPFARF--TLLYSHGNAADLGQMLELFIELRAHLR-VNIMS--YDYSG 105
++G ++V T PF + HG A+ + L E+ LR NI S +D++G
Sbjct: 29 RDGLQLVGT-REEPFGEIYDMAIIFHGFTAN--RNTSLLREIANSLRDENIASVRFDFNG 85
Query: 106 YGASTGKPSEFNTYYDIE---AVYNCLKREYNVKQEELILYGQSVGSGPTLHLASRLQKL 162
+G S GK +IE A+ N +K + +V+ + L G + G LA L
Sbjct: 86 HGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRN--IYLVGHAQGGVVASMLAGLYPDL 143
Query: 163 -RGVVL--HSAILSG----------------IRVLYPVKMTLWFDIYKNIDK---IRHVN 200
+ VVL +A L G I P K Y I + I V+
Sbjct: 144 IKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVS 203
Query: 201 C----PVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLW-------VKGGGHCNLETY 246
PV +IHGT+D +V + K KYD ++ ++G HC ++Y
Sbjct: 204 AQFTKPVCLIHGTDDTVVSPNASK--------KYDQIYQNSTLHLIEGADHCFSDSY 252
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 194 DKIRHVNCPVLVIHGTNDDIV 214
D ++ ++ PVLV HGT+D +V
Sbjct: 209 DDLKRIDVPVLVAHGTDDQVV 229
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 96/237 (40%), Gaps = 54/237 (22%)
Query: 51 KNGNKIVATFWRHPFARF--TLLYSHGNAADLGQMLELFIELRAHLR-VNIMS--YDYSG 105
++G ++V T PF + HG A+ + L E+ LR NI S +D++G
Sbjct: 29 RDGLQLVGT-REEPFGEIYDMAIIFHGFTAN--RNTSLLREIANSLRDENIASVRFDFNG 85
Query: 106 YGASTGKPSEFNTYYDIE---AVYNCLKREYNVKQEELILYGQSVGSGPTLHLASRLQKL 162
+G S GK +IE A+ N +K + +V+ + L G + G LA L
Sbjct: 86 HGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRN--IYLVGHAQGGVVASMLAGLYPDL 143
Query: 163 -RGVVL--HSAILSG----------------IRVLYPVKMTLWFDIYKNIDK---IRHVN 200
+ VVL +A L G I P K Y I + I V+
Sbjct: 144 IKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVS 203
Query: 201 C----PVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLW-------VKGGGHCNLETY 246
PV +IHGT+D +V + K KYD ++ ++G HC ++Y
Sbjct: 204 AQFTKPVCLIHGTDDTVVSPNASK--------KYDQIYQNSTLHLIEGADHCFSDSY 252
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 188 DIYKNIDKIRHVNCPVLVIHGTNDDIVDLSHGKRLWELSKEKYDPLWVKGGGH 240
D K+++K N P L+IHG +D V + +L + +KGG H
Sbjct: 212 DFRKDLEKF---NIPTLIIHGDSDATVPFEYSGKLTHEAIPNSKVALIKGGPH 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,820,651
Number of Sequences: 62578
Number of extensions: 376382
Number of successful extensions: 834
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 820
Number of HSP's gapped (non-prelim): 31
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)