Query 022701
Match_columns 293
No_of_seqs 162 out of 538
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 98.4 1.3E-07 4.5E-12 73.5 2.6 84 2-91 3-100 (101)
2 2jun_A Midline-1; B-BOX, TRIM, 94.7 0.0088 3E-07 45.9 1.3 43 46-88 4-49 (101)
3 2d8u_A Ubiquitin ligase TRIM63 93.5 0.031 1.1E-06 39.7 1.9 46 40-91 3-49 (64)
4 2yvr_A Transcription intermedi 92.9 0.039 1.3E-06 37.5 1.7 44 42-91 3-46 (50)
5 2ffw_A Midline-1; B-BOX, ring 91.2 0.061 2.1E-06 40.5 1.1 44 45-88 30-76 (78)
6 2did_A Tripartite motif protei 90.3 0.14 4.8E-06 35.2 2.2 40 45-91 8-48 (53)
7 3ddt_A E3 ubiquitin-protein li 89.5 0.14 4.7E-06 34.6 1.6 42 44-91 5-47 (48)
8 1fre_A Nuclear factor XNF7; zi 88.9 0.31 1.1E-05 31.8 3.0 27 47-74 5-31 (42)
9 2dja_A Midline-2; tripartite m 86.6 0.26 8.9E-06 36.6 1.7 44 42-91 15-59 (84)
10 2yrg_A Tripartite motif-contai 84.8 0.44 1.5E-05 33.7 2.1 41 44-91 13-54 (59)
11 2ffw_A Midline-1; B-BOX, ring 81.5 0.45 1.5E-05 35.7 1.1 43 2-44 30-75 (78)
12 2csv_A Tripartite motif protei 76.7 0.8 2.7E-05 33.2 1.1 40 45-91 18-57 (72)
13 2egm_A Tripartite motif-contai 72.1 0.66 2.2E-05 32.6 -0.4 28 46-74 19-46 (57)
14 1fre_A Nuclear factor XNF7; zi 70.5 2 6.8E-05 27.8 1.7 31 3-34 4-35 (42)
15 2d8v_A Zinc finger FYVE domain 69.4 2.3 7.7E-05 31.9 2.0 48 42-91 5-53 (67)
16 2did_A Tripartite motif protei 67.5 2.8 9.7E-05 28.4 2.1 40 2-48 8-48 (53)
17 2fc7_A ZZZ3 protein; structure 61.9 13 0.00043 28.3 5.0 51 41-92 18-75 (82)
18 3ddt_A E3 ubiquitin-protein li 59.9 4.1 0.00014 27.1 1.7 32 4-35 8-40 (48)
19 2yrg_A Tripartite motif-contai 59.6 4.9 0.00017 28.2 2.2 31 3-34 15-46 (59)
20 2dja_A Midline-2; tripartite m 58.0 6.9 0.00024 28.7 2.9 45 3-53 19-64 (84)
21 2e5r_A Dystrobrevin alpha; ZZ 55.4 7.9 0.00027 28.0 2.7 49 41-91 9-61 (63)
22 2d8u_A Ubiquitin ligase TRIM63 55.4 6.4 0.00022 27.4 2.2 45 3-53 9-54 (64)
23 2yvr_A Transcription intermedi 52.6 6.3 0.00022 26.2 1.7 32 3-34 7-38 (50)
24 2egm_A Tripartite motif-contai 50.3 4.1 0.00014 28.4 0.5 31 3-34 19-50 (57)
25 2lri_C Autoimmune regulator; Z 48.7 11 0.00038 27.4 2.6 43 3-53 13-58 (66)
26 2yqq_A Zinc finger HIT domain- 46.5 10 0.00035 27.2 2.1 25 44-69 11-35 (56)
27 2csv_A Tripartite motif protei 41.3 10 0.00036 27.1 1.5 31 3-34 19-49 (72)
28 2k0a_A PRE-mRNA-splicing facto 35.8 6.7 0.00023 31.8 -0.4 51 22-72 22-79 (109)
29 4hc9_A Trans-acting T-cell-spe 34.1 7.3 0.00025 31.5 -0.4 74 1-74 4-89 (115)
30 1mm2_A MI2-beta; PHD, zinc fin 32.6 43 0.0015 23.5 3.6 25 3-35 10-34 (61)
31 1f62_A Transcription factor WS 30.2 36 0.0012 22.7 2.7 44 4-52 2-48 (51)
32 1z60_A TFIIH basal transcripti 27.0 12 0.00042 27.0 -0.2 31 47-77 17-50 (59)
33 2rp5_A Putative uncharacterize 26.8 8.6 0.00029 31.9 -1.2 19 218-236 88-106 (136)
34 1v6g_A Actin binding LIM prote 25.7 28 0.00096 24.9 1.6 61 14-75 3-73 (81)
35 2yql_A PHD finger protein 21A; 24.2 29 0.001 23.9 1.4 25 3-35 10-34 (56)
36 4gne_A Histone-lysine N-methyl 23.5 68 0.0023 25.4 3.6 62 3-73 16-85 (107)
37 1x4s_A Protein FON, zinc finge 22.0 28 0.00095 25.3 0.9 27 46-72 12-42 (59)
38 2jne_A Hypothetical protein YF 20.3 88 0.003 25.0 3.5 41 1-55 31-71 (101)
39 2fiy_A Protein FDHE homolog; F 20.1 1.1E+02 0.0036 28.5 4.7 61 3-72 183-260 (309)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.37 E-value=1.3e-07 Score=73.51 Aligned_cols=84 Identities=18% Similarity=0.445 Sum_probs=67.2
Q ss_pred CCCCCccCC---CCeEEEecCCccccccccCcccccccchhcccccc-c---------cccccCCCCceeeccccccccc
Q 022701 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRT-L---------LCERCNSQPALVRCAEERVSLC 68 (293)
Q Consensus 2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsAN~La~RH~Rv-p---------LCd~C~~~PA~v~C~~d~a~LC 68 (293)
+..|++|.. .+|+.+|..+.+.||..|...+|..++..++|.++ + .|+.+...+..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 357999984 68999999999999999999999877766788765 2 3666655668899999999999
Q ss_pred cCCcc-CccCCCCCCCCCcceecc
Q 022701 69 QNCDW-IGHGTSTSASSHKRQTIN 91 (293)
Q Consensus 69 ~~CD~-~~H~An~~as~HqR~pln 91 (293)
..|.. ..|. .|..+||.
T Consensus 83 ~~C~~~~~H~------~H~~~~l~ 100 (101)
T 2jun_A 83 ALCKLVGRHR------DHQVAALS 100 (101)
T ss_dssp HHHHHHTTTS------SSCBCCCC
T ss_pred hhcCCCCCcC------CCCeecCC
Confidence 99986 4453 56666653
No 2
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.75 E-value=0.0088 Score=45.95 Aligned_cols=43 Identities=28% Similarity=0.571 Sum_probs=36.3
Q ss_pred ccccccCC---CCceeeccccccccccCCccCccCCCCCCCCCcce
Q 022701 46 LLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (293)
Q Consensus 46 pLCd~C~~---~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~ 88 (293)
..|++|.. .+|+.+|..|..+||..|....|..+....+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 57999984 57999999999999999998878766666788865
No 3
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=93.46 E-value=0.031 Score=39.66 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=35.6
Q ss_pred ccccccccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701 40 KRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (293)
Q Consensus 40 ~RH~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln 91 (293)
.+..+..+|..+...+..+||..|...+|..|... .| ..|..+||.
T Consensus 3 ~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 49 (64)
T 2d8u_A 3 SGSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 49 (64)
T ss_dssp CCCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred CCCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHH
Confidence 34556678988877889999999999999999864 44 357666655
No 4
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=92.90 E-value=0.039 Score=37.50 Aligned_cols=44 Identities=23% Similarity=0.547 Sum_probs=35.4
Q ss_pred ccccccccccCCCCceeeccccccccccCCccCccCCCCCCCCCcceecc
Q 022701 42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (293)
Q Consensus 42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~pln 91 (293)
..|...|..+...+..+||..|...+|..|....| ..|..+||.
T Consensus 3 ~~~~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ 46 (50)
T 2yvr_A 3 GERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLE 46 (50)
T ss_dssp CCCSCBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETT
T ss_pred CcCCCcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHH
Confidence 45667788887788999999999999999987544 367777765
No 5
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=91.20 E-value=0.061 Score=40.52 Aligned_cols=44 Identities=27% Similarity=0.559 Sum_probs=36.0
Q ss_pred cccccccCC---CCceeeccccccccccCCccCccCCCCCCCCCcce
Q 022701 45 TLLCERCNS---QPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQ 88 (293)
Q Consensus 45 vpLCd~C~~---~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~ 88 (293)
...|+.|.. .+|..+|..|.+++|..|-+..|.......+|+.+
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~ 76 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 76 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence 357999975 56899999999999999988768766667788764
No 6
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=90.32 E-value=0.14 Score=35.19 Aligned_cols=40 Identities=20% Similarity=0.472 Sum_probs=31.9
Q ss_pred cccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701 45 TLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (293)
Q Consensus 45 vpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln 91 (293)
..+|..+. .+..+||..|...+|..|... .| ..|..+||.
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLS 48 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECC
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHH
Confidence 34688776 678999999999999999863 34 478888776
No 7
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=89.55 E-value=0.14 Score=34.60 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=31.7
Q ss_pred ccccccccCCCCceeeccccccccccCCcc-CccCCCCCCCCCcceecc
Q 022701 44 RTLLCERCNSQPALVRCAEERVSLCQNCDW-IGHGTSTSASSHKRQTIN 91 (293)
Q Consensus 44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~-~~H~An~~as~HqR~pln 91 (293)
+..+|......+..+||..|...+|..|.. ..| ..|..+||.
T Consensus 5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 47 (48)
T 3ddt_A 5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 47 (48)
T ss_dssp TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred cCCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence 345677777677889999999999999974 344 367777764
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=88.94 E-value=0.31 Score=31.76 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=22.6
Q ss_pred cccccCCCCceeeccccccccccCCccC
Q 022701 47 LCERCNSQPALVRCAEERVSLCQNCDWI 74 (293)
Q Consensus 47 LCd~C~~~PA~v~C~~d~a~LC~~CD~~ 74 (293)
+|.... .+..+||..|...+|..|...
T Consensus 5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~ 31 (42)
T 1fre_A 5 KCSEHD-ERLKLYCKDDGTLSCVICRDS 31 (42)
T ss_dssp CCCSSC-SSCCCCCCSSSSSSCCTTSSC
T ss_pred cchhhC-CeeeEEeCCCCeEEeccCCCC
Confidence 576665 578899999999999999863
No 9
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=86.65 E-value=0.26 Score=36.63 Aligned_cols=44 Identities=20% Similarity=0.536 Sum_probs=32.7
Q ss_pred ccccccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701 42 HSRTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (293)
Q Consensus 42 H~RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln 91 (293)
..+..+|..+...+..+||..|...+|..|... .| ..|..+||.
T Consensus 15 ~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 59 (84)
T 2dja_A 15 HLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN 59 (84)
T ss_dssp CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred CCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHH
Confidence 344456777777788999999999999999873 34 356666554
No 10
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.80 E-value=0.44 Score=33.70 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=31.5
Q ss_pred ccccccccCCCCceeeccccccccccCCccC-ccCCCCCCCCCcceecc
Q 022701 44 RTLLCERCNSQPALVRCAEERVSLCQNCDWI-GHGTSTSASSHKRQTIN 91 (293)
Q Consensus 44 RvpLCd~C~~~PA~v~C~~d~a~LC~~CD~~-~H~An~~as~HqR~pln 91 (293)
+..+|..+. .+..+||..|...+|..|... .| ..|...||.
T Consensus 13 ~~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ 54 (59)
T 2yrg_A 13 KVDHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTS 54 (59)
T ss_dssp CSSBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECC
T ss_pred cCccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHH
Confidence 345677776 578899999999999999864 33 467777775
No 11
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=81.52 E-value=0.45 Score=35.68 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=35.0
Q ss_pred CCCCCccCC---CCeEEEecCCccccccccCcccccccchhccccc
Q 022701 2 GYMCDFCGD---QRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR 44 (293)
Q Consensus 2 ~~~Cd~C~~---a~A~vyC~aD~A~LC~~CD~~vHsAN~La~RH~R 44 (293)
+..|++|.. .+|+-.|....+.||..|=...|...+..++|.-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 357999976 6799999999999999998877876665667753
No 12
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=76.71 E-value=0.8 Score=33.23 Aligned_cols=40 Identities=18% Similarity=0.447 Sum_probs=30.5
Q ss_pred cccccccCCCCceeeccccccccccCCccCccCCCCCCCCCcceecc
Q 022701 45 TLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (293)
Q Consensus 45 vpLCd~C~~~PA~v~C~~d~a~LC~~CD~~~H~An~~as~HqR~pln 91 (293)
..+|..+. .+..+||..|...+|..|....| ..|..+||.
T Consensus 18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ 57 (72)
T 2csv_A 18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVE 57 (72)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHH
T ss_pred cCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHH
Confidence 34687774 78899999999999999986444 367766654
No 13
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.11 E-value=0.66 Score=32.64 Aligned_cols=28 Identities=14% Similarity=0.434 Sum_probs=23.5
Q ss_pred ccccccCCCCceeeccccccccccCCccC
Q 022701 46 LLCERCNSQPALVRCAEERVSLCQNCDWI 74 (293)
Q Consensus 46 pLCd~C~~~PA~v~C~~d~a~LC~~CD~~ 74 (293)
.+|..+. .+..+||..|...+|..|...
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~ 46 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRES 46 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHS
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCC
Confidence 4677774 678999999999999999863
No 14
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=70.53 E-value=2 Score=27.75 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=24.7
Q ss_pred CCCCccCCCCeEEEecCCccccccccCc-cccc
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHs 34 (293)
.+|..-+ .+-.+||..|...+|..|-. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 4677776 56789999999999999986 4554
No 15
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=69.37 E-value=2.3 Score=31.93 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=38.7
Q ss_pred ccccccccccCCCCceeecccc-ccccccCCccCccCCCCCCCCCcceecc
Q 022701 42 HSRTLLCERCNSQPALVRCAEE-RVSLCQNCDWIGHGTSTSASSHKRQTIN 91 (293)
Q Consensus 42 H~RvpLCd~C~~~PA~v~C~~d-~a~LC~~CD~~~H~An~~as~HqR~pln 91 (293)
-...+.|-+|... |+++|..| .-..|..|-+..|.. ..-..|+.++..
T Consensus 5 ~ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 5 SSGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPYH 53 (67)
T ss_dssp CCCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECCC
T ss_pred CcCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeecc
Confidence 3456789999987 99999998 778999999999964 446789887753
No 16
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=67.50 E-value=2.8 Score=28.42 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=29.5
Q ss_pred CCCCCccCCCCeEEEecCCccccccccCc-ccccccchhccccccccc
Q 022701 2 GYMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLC 48 (293)
Q Consensus 2 ~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsAN~La~RH~RvpLC 48 (293)
+.+|..-+ .+-.+||..|...+|..|-. .-|. .|..+++-
T Consensus 8 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ 48 (53)
T 2did_A 8 ESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLS 48 (53)
T ss_dssp CCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECC
T ss_pred CCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHH
Confidence 35677776 56889999999999999986 5564 35555554
No 17
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=61.92 E-value=13 Score=28.29 Aligned_cols=51 Identities=22% Similarity=0.463 Sum_probs=33.9
Q ss_pred cccccccccccCCCCc---eeecccccc----ccccCCccCccCCCCCCCCCcceeccC
Q 022701 41 RHSRTLLCERCNSQPA---LVRCAEERV----SLCQNCDWIGHGTSTSASSHKRQTINC 92 (293)
Q Consensus 41 RH~RvpLCd~C~~~PA---~v~C~~d~a----~LC~~CD~~~H~An~~as~HqR~pln~ 92 (293)
.|..+ .|+.|...|- .+.|..|.- -||+.|-..++.+..=...|.-++|..
T Consensus 18 ~H~~~-~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~ 75 (82)
T 2fc7_A 18 QHVGF-KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYR 75 (82)
T ss_dssp EESSC-CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECS
T ss_pred eeCcC-CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeC
Confidence 45443 7999998874 478999975 699999877543222223566555543
No 18
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=59.86 E-value=4.1 Score=27.07 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=23.8
Q ss_pred CCCccCCCCeEEEecCCccccccccC-cccccc
Q 022701 4 MCDFCGDQRSIVYCRSDAACLCLSCD-RNVHLA 35 (293)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD-~~vHsA 35 (293)
+|..-+..+-.+||..|...+|..|- ..-|..
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~ 40 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKA 40 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTTT
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCCC
Confidence 45555545678999999999999996 445654
No 19
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.59 E-value=4.9 Score=28.18 Aligned_cols=31 Identities=26% Similarity=0.776 Sum_probs=24.5
Q ss_pred CCCCccCCCCeEEEecCCccccccccCc-cccc
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHs 34 (293)
.+|..-+ .+-.+||+.|...+|..|.. .-|.
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~ 46 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEHR 46 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcCC
Confidence 4677766 46789999999999999986 4554
No 20
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=58.00 E-value=6.9 Score=28.69 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=32.9
Q ss_pred CCCCccCCCCeEEEecCCccccccccCc-ccccccchhccccccccccccCC
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCNS 53 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsAN~La~RH~RvpLCd~C~~ 53 (293)
..|..-+..+-.+||..|...+|..|-. .-|. .|..+++-+.-..
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~ 64 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEK 64 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHH
Confidence 4577775566889999999999999986 5564 3666666654443
No 21
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.45 E-value=7.9 Score=27.99 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=31.6
Q ss_pred cccccccccccCCCC---ceeeccccc-cccccCCccCccCCCCCCCCCcceecc
Q 022701 41 RHSRTLLCERCNSQP---ALVRCAEER-VSLCQNCDWIGHGTSTSASSHKRQTIN 91 (293)
Q Consensus 41 RH~RvpLCd~C~~~P---A~v~C~~d~-a~LC~~CD~~~H~An~~as~HqR~pln 91 (293)
.|. ..|+.|...| ..+.|..|. --||+.|-..+...+.--..|.-+-+.
T Consensus 9 ~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 9 FHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp CSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred eeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 465 5799999887 347799884 559999987764322222345544443
No 22
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=55.43 E-value=6.4 Score=27.38 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=32.7
Q ss_pred CCCCccCCCCeEEEecCCccccccccCc-ccccccchhccccccccccccCC
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHLANALSKRHSRTLLCERCNS 53 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHsAN~La~RH~RvpLCd~C~~ 53 (293)
..|..-...+-.+||..|...+|..|-. .-|. .|..+++-+....
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence 4677775566789999999999999975 4664 3666666655443
No 23
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=52.58 E-value=6.3 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.578 Sum_probs=25.3
Q ss_pred CCCCccCCCCeEEEecCCccccccccCccccc
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHL 34 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHs 34 (293)
..|..-...+-.+||..|...+|..|-..-|.
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~ 38 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK 38 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTT
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCC
Confidence 45777755567899999999999999775554
No 24
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.27 E-value=4.1 Score=28.44 Aligned_cols=31 Identities=19% Similarity=0.576 Sum_probs=24.3
Q ss_pred CCCCccCCCCeEEEecCCccccccccCc-cccc
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDR-NVHL 34 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~-~vHs 34 (293)
.+|..-+ .+-.+||..|.+.+|..|.. .-|.
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 4577775 56889999999999999985 4443
No 25
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=48.72 E-value=11 Score=27.37 Aligned_cols=43 Identities=28% Similarity=0.592 Sum_probs=27.5
Q ss_pred CCCCccCCCCeEEEecCCccccccccCcccccc--c-chhccccccccccccCC
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA--N-ALSKRHSRTLLCERCNS 53 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsA--N-~La~RH~RvpLCd~C~~ 53 (293)
..|..|+.. +...+|..|++..|.. + +|.......+.|..|..
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCcCCCCCC--------CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 468888853 4466788899888874 2 34444445566666654
No 26
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.52 E-value=10 Score=27.24 Aligned_cols=25 Identities=32% Similarity=0.693 Sum_probs=21.9
Q ss_pred ccccccccCCCCceeecccccccccc
Q 022701 44 RTLLCERCNSQPALVRCAEERVSLCQ 69 (293)
Q Consensus 44 RvpLCd~C~~~PA~v~C~~d~a~LC~ 69 (293)
+..+|.+|+. ++.+.|..|.+..|.
T Consensus 11 ~~~~C~vC~~-~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 11 STVVCVICLE-KPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCCTTTCS-CCSEECTTTCCEESS
T ss_pred CCCccCcCcC-CCeeeCCCCCCCeeC
Confidence 3447999999 999999999999986
No 27
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=41.30 E-value=10 Score=27.13 Aligned_cols=31 Identities=26% Similarity=0.735 Sum_probs=24.8
Q ss_pred CCCCccCCCCeEEEecCCccccccccCccccc
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHL 34 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHs 34 (293)
.+|..-+ .+-.+||..|...+|..|-..-|.
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~ 49 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEHK 49 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTTS
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCCC
Confidence 4677775 577899999999999999765554
No 28
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=35.79 E-value=6.7 Score=31.83 Aligned_cols=51 Identities=20% Similarity=0.511 Sum_probs=27.7
Q ss_pred cccccccCcccccccchhccccccccccccCCCCceeeccccc-------cccccCCc
Q 022701 22 ACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER-------VSLCQNCD 72 (293)
Q Consensus 22 A~LC~~CD~~vHsAN~La~RH~RvpLCd~C~~~PA~v~C~~d~-------a~LC~~CD 72 (293)
+.||..||-+--.-...++-...+.+|+.|....-.-+|..|. +..|..|-
T Consensus 22 G~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~ 79 (109)
T 2k0a_A 22 GLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECC 79 (109)
T ss_dssp CEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHH
T ss_pred hhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhh
Confidence 4556665554433333333345566888776555444554443 55666665
No 29
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=34.15 E-value=7.3 Score=31.50 Aligned_cols=74 Identities=23% Similarity=0.516 Sum_probs=46.3
Q ss_pred CCCCCCccCCCCeEEEecCCc-cccccccC--cccccccc-hhccccc-------cccccccCCCCceee-ccccccccc
Q 022701 1 MGYMCDFCGDQRSIVYCRSDA-ACLCLSCD--RNVHLANA-LSKRHSR-------TLLCERCNSQPALVR-CAEERVSLC 68 (293)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~-A~LC~~CD--~~vHsAN~-La~RH~R-------vpLCd~C~~~PA~v~-C~~d~a~LC 68 (293)
+++.|..|+.....+|=+.+. ..||-.|. .+.|..|. +.....| ...|..|......+| =..+...||
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 367899999886666666554 47999999 44455544 2222111 235888887765444 334456899
Q ss_pred cCCccC
Q 022701 69 QNCDWI 74 (293)
Q Consensus 69 ~~CD~~ 74 (293)
..|-.-
T Consensus 84 NaCgl~ 89 (115)
T 4hc9_A 84 NACGLY 89 (115)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 999743
No 30
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=32.63 E-value=43 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=17.7
Q ss_pred CCCCccCCCCeEEEecCCccccccccCcccccc
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsA 35 (293)
..|..|+.. +.-.+|..|++..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~~ 34 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHIH 34 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCSS
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHccc
Confidence 457778753 4566788899888874
No 31
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.22 E-value=36 Score=22.72 Aligned_cols=44 Identities=27% Similarity=0.629 Sum_probs=25.4
Q ss_pred CCCccCCCCeEEEecCCccccccccCcccccc--c-chhccccccccccccC
Q 022701 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA--N-ALSKRHSRTLLCERCN 52 (293)
Q Consensus 4 ~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsA--N-~La~RH~RvpLCd~C~ 52 (293)
.|..|+... ..+.-.+|..|++..|.. + +|.......+.|..|.
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence 588888753 234566788999888864 1 2333333344455553
No 32
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.95 E-value=12 Score=27.04 Aligned_cols=31 Identities=26% Similarity=0.630 Sum_probs=23.1
Q ss_pred cccccCCCC---ceeeccccccccccCCccCccC
Q 022701 47 LCERCNSQP---ALVRCAEERVSLCQNCDWIGHG 77 (293)
Q Consensus 47 LCd~C~~~P---A~v~C~~d~a~LC~~CD~~~H~ 77 (293)
.|-.|...- ..+.|..|+..+|..||.-+|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe 50 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHD 50 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHh
Confidence 355554432 2477999999999999999886
No 33
>2rp5_A Putative uncharacterized protein CEP-1; oligomerization domain, SAM domain, transcription; NMR {Caenorhabditis elegans}
Probab=26.85 E-value=8.6 Score=31.93 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=16.3
Q ss_pred CCCCCcccccccchhhhhh
Q 022701 218 DFNMDEMDLNFENYEELFG 236 (293)
Q Consensus 218 ~f~~ddv~l~fenyeelfg 236 (293)
=|+|-|++=-||.|++||-
T Consensus 88 i~TM~Dl~k~Fe~~~~iFE 106 (136)
T 2rp5_A 88 IYTMGDMIREFEKHNDIFE 106 (136)
T ss_dssp CCSTTHHHHHHHHTSCHHH
T ss_pred ceeHHHHHHHHHHHHHHHH
Confidence 4899999999999998863
No 34
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.69 E-value=28 Score=24.87 Aligned_cols=61 Identities=20% Similarity=0.337 Sum_probs=36.7
Q ss_pred EEEecCC----ccccccccCcccccccchh----ccccccccccccCCCC--ceeeccccccccccCCccCc
Q 022701 14 IVYCRSD----AACLCLSCDRNVHLANALS----KRHSRTLLCERCNSQP--ALVRCAEERVSLCQNCDWIG 75 (293)
Q Consensus 14 ~vyC~aD----~A~LC~~CD~~vHsAN~La----~RH~RvpLCd~C~~~P--A~v~C~~d~a~LC~~CD~~~ 75 (293)
.+||+.| -+..|..|+..|.. ..+. .-|..-..|..|...- ...+-......+|..|-...
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~ 73 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPV 73 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCC
T ss_pred CCcchHHHHhHhCCcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhccc
Confidence 3688888 34579999998873 2221 2355555677777653 22333344445788776544
No 35
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.24 E-value=29 Score=23.85 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=17.1
Q ss_pred CCCCccCCCCeEEEecCCccccccccCcccccc
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLA 35 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsA 35 (293)
..|..|+.. +.-.+|..|++..|..
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~~H~~ 34 (56)
T 2yql_A 10 DFCSVCRKS--------GQLLMCDTCSRVYHLD 34 (56)
T ss_dssp CSCSSSCCS--------SCCEECSSSSCEECSS
T ss_pred CCCccCCCC--------CeEEEcCCCCcceECc
Confidence 468888864 3455677888777763
No 36
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.52 E-value=68 Score=25.40 Aligned_cols=62 Identities=26% Similarity=0.528 Sum_probs=36.7
Q ss_pred CCCCccCCCCeEEEecCCcccccc--ccCccccccc-chhccccccccc-----cccCCCCceeeccccccccccCCcc
Q 022701 3 YMCDFCGDQRSIVYCRSDAACLCL--SCDRNVHLAN-ALSKRHSRTLLC-----ERCNSQPALVRCAEERVSLCQNCDW 73 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~aD~A~LC~--~CD~~vHsAN-~La~RH~RvpLC-----d~C~~~PA~v~C~~d~a~LC~~CD~ 73 (293)
..|..|+..-- ..+|. .|++-.|..= .|.....-.+.| ..|+. ++.++|..|..++|..|-.
T Consensus 16 ~~C~~C~~~G~--------ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~~C~k-~~~~~C~~Cp~sfC~~c~~ 85 (107)
T 4gne_A 16 DYCFQCGDGGE--------LVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSS-AAVSFCEFCPHSFCKDHEK 85 (107)
T ss_dssp SSCTTTCCCSE--------EEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCTTTCS-BCCEECSSSSCEECTTTCT
T ss_pred CCCCcCCCCCc--------EeEECCCCCCcccccccCcCCcCCCCCEECCCCCCCcCCC-CCCcCcCCCCcchhhhccC
Confidence 45777875433 34455 6777666531 122222223444 45554 4568999999999998863
No 37
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=21.96 E-value=28 Score=25.34 Aligned_cols=27 Identities=30% Similarity=0.647 Sum_probs=22.9
Q ss_pred ccccccCC---CCceeecccccccccc-CCc
Q 022701 46 LLCERCNS---QPALVRCAEERVSLCQ-NCD 72 (293)
Q Consensus 46 pLCd~C~~---~PA~v~C~~d~a~LC~-~CD 72 (293)
.+|.+|.. .++.+.|..|.+..|. .|-
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~ 42 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCY 42 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHH
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChHHH
Confidence 58999985 6899999999999987 554
No 38
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.29 E-value=88 Score=25.01 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=22.6
Q ss_pred CCCCCCccCCCCeEEEecCCccccccccCcccccccchhccccccccccccCCCC
Q 022701 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQP 55 (293)
Q Consensus 1 M~~~Cd~C~~a~A~vyC~aD~A~LC~~CD~~vHsAN~La~RH~RvpLCd~C~~~P 55 (293)
|...|..|+..- .+ .+....|..|+.. =.+..+|+-|+..-
T Consensus 31 M~~~CP~Cq~eL--~~--~g~~~hC~~C~~~----------f~~~a~CPdC~q~L 71 (101)
T 2jne_A 31 MELHCPQCQHVL--DQ--DNGHARCRSCGEF----------IEMKALCPDCHQPL 71 (101)
T ss_dssp CCCBCSSSCSBE--EE--ETTEEEETTTCCE----------EEEEEECTTTCSBC
T ss_pred ccccCccCCCcc--ee--cCCEEECccccch----------hhccccCcchhhHH
Confidence 566777777542 22 2334447777742 23455677776543
No 39
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.10 E-value=1.1e+02 Score=28.48 Aligned_cols=61 Identities=23% Similarity=0.512 Sum_probs=38.0
Q ss_pred CCCCccCCCCeEEEec----CCcc--ccccccCcccccccchhccccccccccccCCCCceeec-ccc----------cc
Q 022701 3 YMCDFCGDQRSIVYCR----SDAA--CLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC-AEE----------RV 65 (293)
Q Consensus 3 ~~Cd~C~~a~A~vyC~----aD~A--~LC~~CD~~vHsAN~La~RH~RvpLCd~C~~~PA~v~C-~~d----------~a 65 (293)
..|-+||+.|..-+-+ .++. ..|.-|...-| .+..-|..|+......|- ... ++
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~---------~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~ 253 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH---------YVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRA 253 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE---------CCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEE
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe---------ecCcCCcCCCCCCCeeEEEecCccccCCCcceEE
Confidence 5799999987543434 2332 23889985554 344579999876544333 221 57
Q ss_pred ccccCCc
Q 022701 66 SLCQNCD 72 (293)
Q Consensus 66 ~LC~~CD 72 (293)
-.|..|.
T Consensus 254 e~C~~C~ 260 (309)
T 2fiy_A 254 ETCPSCQ 260 (309)
T ss_dssp EEETTTT
T ss_pred EEccccc
Confidence 7888886
Done!