Query 022702
Match_columns 293
No_of_seqs 321 out of 1689
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 3.5E-20 1.2E-24 141.4 7.3 63 74-136 14-76 (80)
2 2da3_A Alpha-fetoprotein enhan 99.8 4.2E-20 1.4E-24 140.3 6.8 62 75-136 15-76 (80)
3 2cue_A Paired box protein PAX6 99.8 1.1E-19 3.9E-24 138.5 9.0 65 74-138 4-68 (80)
4 2kt0_A Nanog, homeobox protein 99.8 5.5E-20 1.9E-24 141.2 7.1 63 74-136 19-81 (84)
5 2dmu_A Homeobox protein goosec 99.8 8.6E-20 2.9E-24 135.6 7.4 63 74-136 4-66 (70)
6 2e1o_A Homeobox protein PRH; D 99.8 1.2E-19 4.2E-24 134.9 7.6 62 75-136 5-66 (70)
7 2dmq_A LIM/homeobox protein LH 99.8 1.4E-19 4.7E-24 137.7 7.9 63 75-137 5-67 (80)
8 2cra_A Homeobox protein HOX-B1 99.8 4.9E-20 1.7E-24 137.1 5.1 63 74-136 4-66 (70)
9 2h1k_A IPF-1, pancreatic and d 99.8 1.1E-19 3.8E-24 132.5 6.7 60 77-136 3-62 (63)
10 1nk2_P Homeobox protein VND; h 99.8 2.3E-19 7.9E-24 135.9 8.6 63 76-138 8-70 (77)
11 2dms_A Homeobox protein OTX2; 99.8 1.5E-19 5.1E-24 137.8 7.2 63 74-136 4-66 (80)
12 3a01_A Homeodomain-containing 99.8 1.4E-19 4.7E-24 142.1 7.0 66 75-140 15-80 (93)
13 1puf_A HOX-1.7, homeobox prote 99.8 4.2E-19 1.5E-23 134.4 9.3 63 75-137 11-73 (77)
14 2da2_A Alpha-fetoprotein enhan 99.8 1E-19 3.4E-24 135.2 5.7 63 74-136 4-66 (70)
15 2da1_A Alpha-fetoprotein enhan 99.8 1.1E-19 3.6E-24 135.0 5.6 63 74-136 4-66 (70)
16 2vi6_A Homeobox protein nanog; 99.8 6.5E-20 2.2E-24 133.2 4.4 60 77-136 3-62 (62)
17 1wh5_A ZF-HD homeobox family p 99.8 1.1E-19 3.8E-24 139.1 5.4 60 75-134 15-78 (80)
18 2djn_A Homeobox protein DLX-5; 99.8 9.8E-20 3.4E-24 135.4 4.6 63 74-136 4-66 (70)
19 1ig7_A Homeotic protein MSX-1; 99.8 3.3E-19 1.1E-23 127.6 6.9 57 78-134 1-57 (58)
20 2hdd_A Protein (engrailed home 99.8 2.7E-19 9.1E-24 129.6 6.2 58 77-134 3-60 (61)
21 2ecc_A Homeobox and leucine zi 99.8 2.4E-19 8E-24 136.3 6.1 59 79-137 5-63 (76)
22 1zq3_P PRD-4, homeotic bicoid 99.8 4.8E-19 1.6E-23 131.1 7.4 61 77-137 2-62 (68)
23 1fjl_A Paired protein; DNA-bin 99.8 4.8E-19 1.7E-23 135.2 7.6 62 75-136 16-77 (81)
24 2da4_A Hypothetical protein DK 99.8 2E-19 6.7E-24 137.1 5.2 62 75-136 6-71 (80)
25 1ahd_P Antennapedia protein mu 99.8 3.3E-19 1.1E-23 132.1 5.9 60 77-136 2-61 (68)
26 2da5_A Zinc fingers and homeob 99.8 4.5E-19 1.6E-23 133.8 6.7 59 78-136 8-66 (75)
27 1uhs_A HOP, homeodomain only p 99.8 6.5E-19 2.2E-23 131.6 7.3 59 78-136 2-61 (72)
28 1b8i_A Ultrabithorax, protein 99.8 3.5E-19 1.2E-23 136.3 5.9 61 76-136 19-79 (81)
29 1wh7_A ZF-HD homeobox family p 99.8 2E-19 6.8E-24 137.9 4.5 59 75-134 15-78 (80)
30 1jgg_A Segmentation protein EV 99.8 5.1E-19 1.7E-23 127.7 6.4 58 78-135 2-59 (60)
31 1yz8_P Pituitary homeobox 2; D 99.8 2.7E-19 9.3E-24 132.3 4.8 61 77-137 3-63 (68)
32 1ftt_A TTF-1 HD, thyroid trans 99.8 7.3E-19 2.5E-23 130.1 6.8 61 77-137 2-62 (68)
33 2l7z_A Homeobox protein HOX-A1 99.8 8.3E-19 2.8E-23 131.6 7.1 61 76-136 6-66 (73)
34 2m0c_A Homeobox protein arista 99.8 7.3E-19 2.5E-23 131.8 6.4 62 75-136 7-68 (75)
35 2r5y_A Homeotic protein sex co 99.8 6.3E-19 2.2E-23 136.7 6.2 62 75-136 26-87 (88)
36 2hi3_A Homeodomain-only protei 99.8 1.1E-18 3.8E-23 130.8 7.3 59 78-136 3-62 (73)
37 1bw5_A ISL-1HD, insulin gene e 99.8 3.7E-19 1.3E-23 130.7 4.5 60 77-136 3-62 (66)
38 2k40_A Homeobox expressed in E 99.8 5.7E-19 1.9E-23 130.1 5.4 61 78-138 2-62 (67)
39 3nar_A ZHX1, zinc fingers and 99.8 4.9E-19 1.7E-23 139.6 5.3 64 76-139 24-87 (96)
40 3rkq_A Homeobox protein NKX-2. 99.8 1E-18 3.6E-23 124.5 6.2 56 78-133 3-58 (58)
41 3a03_A T-cell leukemia homeobo 99.8 1.1E-18 3.9E-23 124.4 6.4 54 82-135 2-55 (56)
42 3a02_A Homeobox protein arista 99.7 1E-18 3.4E-23 126.1 5.3 57 80-136 2-58 (60)
43 1b72_A Protein (homeobox prote 99.7 1.4E-18 4.8E-23 137.1 6.4 62 76-137 33-94 (97)
44 1x2n_A Homeobox protein pknox1 99.7 2.4E-18 8.4E-23 128.7 7.3 63 75-137 5-70 (73)
45 2ecb_A Zinc fingers and homeob 99.7 1.2E-18 4.2E-23 136.1 5.6 57 80-136 14-70 (89)
46 2dn0_A Zinc fingers and homeob 99.7 1.1E-18 3.7E-23 131.9 4.8 59 78-136 9-67 (76)
47 1akh_A Protein (mating-type pr 99.7 1.3E-18 4.6E-23 125.6 5.0 58 76-133 4-61 (61)
48 2ly9_A Zinc fingers and homeob 99.7 2.2E-18 7.5E-23 129.2 5.5 60 77-136 6-65 (74)
49 2cuf_A FLJ21616 protein; homeo 99.7 5.7E-18 1.9E-22 133.1 7.7 63 74-136 4-81 (95)
50 1k61_A Mating-type protein alp 99.7 5E-18 1.7E-22 122.3 6.3 56 80-135 1-59 (60)
51 1puf_B PRE-B-cell leukemia tra 99.7 3.5E-18 1.2E-22 127.9 5.6 61 78-138 2-65 (73)
52 2cqx_A LAG1 longevity assuranc 99.7 1.5E-18 5.1E-23 130.4 2.8 58 78-135 9-67 (72)
53 1b72_B Protein (PBX1); homeodo 99.7 8.1E-18 2.8E-22 129.9 7.0 61 78-138 2-65 (87)
54 2dmp_A Zinc fingers and homeob 99.7 1.1E-17 3.6E-22 130.4 7.7 58 79-136 15-72 (89)
55 2dmn_A Homeobox protein TGIF2L 99.7 9.4E-18 3.2E-22 129.0 7.2 63 74-136 4-69 (83)
56 1du6_A PBX1, homeobox protein 99.7 3.1E-18 1.1E-22 125.0 3.3 58 77-134 3-63 (64)
57 1le8_B Mating-type protein alp 99.7 6.3E-18 2.1E-22 129.9 4.6 61 78-138 3-66 (83)
58 1mnm_C Protein (MAT alpha-2 tr 99.7 1.9E-17 6.5E-22 128.1 6.3 59 76-134 26-87 (87)
59 1au7_A Protein PIT-1, GHF-1; c 99.7 9E-18 3.1E-22 142.0 4.6 61 75-135 85-145 (146)
60 3nau_A Zinc fingers and homeob 99.7 2.5E-17 8.4E-22 121.7 6.0 53 84-136 11-63 (66)
61 1e3o_C Octamer-binding transcr 99.7 1.7E-17 5.8E-22 142.1 5.0 61 75-135 99-159 (160)
62 2xsd_C POU domain, class 3, tr 99.7 1.6E-17 5.3E-22 143.2 4.8 63 75-137 97-159 (164)
63 2l9r_A Homeobox protein NKX-3. 99.7 1.4E-17 4.9E-22 124.2 3.6 55 83-137 10-64 (69)
64 2da6_A Hepatocyte nuclear fact 99.7 1E-16 3.5E-21 128.1 8.4 61 76-136 5-86 (102)
65 3d1n_I POU domain, class 6, tr 99.7 5.5E-17 1.9E-21 137.6 6.7 60 75-134 91-150 (151)
66 1wi3_A DNA-binding protein SAT 99.7 9.8E-17 3.3E-21 119.0 6.4 58 75-132 5-63 (71)
67 2e19_A Transcription factor 8; 99.7 6E-17 2.1E-21 119.0 4.7 54 81-134 7-60 (64)
68 1x2m_A LAG1 longevity assuranc 99.6 4.6E-17 1.6E-21 119.8 3.5 49 86-134 9-58 (64)
69 3l1p_A POU domain, class 5, tr 99.6 1.6E-16 5.3E-21 135.6 5.8 60 76-135 95-154 (155)
70 1lfb_A Liver transcription fac 99.6 7.6E-17 2.6E-21 128.3 3.4 62 76-137 8-90 (99)
71 3k2a_A Homeobox protein MEIS2; 99.6 2.8E-16 9.5E-21 116.2 5.1 59 82-140 3-64 (67)
72 2d5v_A Hepatocyte nuclear fact 99.6 2.1E-16 7.1E-21 135.5 4.2 64 74-137 94-157 (164)
73 2lk2_A Homeobox protein TGIF1; 99.4 1.3E-13 4.4E-18 107.5 6.5 55 83-137 11-68 (89)
74 1ic8_A Hepatocyte nuclear fact 99.4 2.5E-14 8.5E-19 126.4 2.3 60 75-134 113-193 (194)
75 2da7_A Zinc finger homeobox pr 99.4 1.6E-13 5.4E-18 102.2 5.1 46 86-131 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.3 1.3E-12 4.3E-17 117.3 5.1 57 76-132 141-218 (221)
77 1mh3_A Maltose binding-A1 home 99.3 6.1E-13 2.1E-17 125.8 3.0 55 79-133 367-421 (421)
78 2nzz_A Penetratin conjugated G 99.0 1.5E-11 5.1E-16 80.8 -2.2 23 119-141 1-23 (37)
79 2ys9_A Homeobox and leucine zi 93.9 0.042 1.4E-06 40.5 3.2 39 89-127 18-56 (70)
80 1gu4_A CAAT/enhancer binding p 92.4 0.48 1.7E-05 35.5 7.2 47 128-177 28-74 (78)
81 1hjb_A Ccaat/enhancer binding 92.1 0.48 1.6E-05 36.3 7.0 47 128-177 28-74 (87)
82 1gd2_E Transcription factor PA 91.9 0.42 1.4E-05 35.2 6.3 39 135-173 32-70 (70)
83 2jn6_A Protein CGL2762, transp 86.7 0.21 7.2E-06 37.6 1.2 42 81-126 3-45 (97)
84 1ci6_A Transcription factor AT 86.5 3.1 0.00011 29.6 7.3 36 140-175 24-59 (63)
85 2wt7_B Transcription factor MA 85.7 3.9 0.00013 31.4 7.9 61 115-175 17-84 (90)
86 1t2k_D Cyclic-AMP-dependent tr 85.3 3.9 0.00013 28.6 7.3 36 140-175 23-58 (61)
87 2wt7_A Proto-oncogene protein 84.2 4.6 0.00016 28.6 7.3 36 140-175 24-59 (63)
88 1jnm_A Proto-oncogene C-JUN; B 84.2 3.6 0.00012 28.9 6.7 37 140-176 23-59 (62)
89 2yy0_A C-MYC-binding protein; 84.0 2.2 7.6E-05 29.5 5.3 31 139-169 19-49 (53)
90 1t2k_D Cyclic-AMP-dependent tr 80.4 5.1 0.00018 28.0 6.3 41 129-169 19-59 (61)
91 2dgc_A Protein (GCN4); basic d 79.7 4.1 0.00014 29.0 5.6 28 141-168 32-59 (63)
92 2yy0_A C-MYC-binding protein; 78.5 2.9 9.9E-05 28.9 4.3 31 146-176 19-49 (53)
93 1hlv_A CENP-B, major centromer 78.5 3.9 0.00013 31.8 5.8 50 79-131 3-52 (131)
94 2wt7_A Proto-oncogene protein 77.3 11 0.00037 26.5 7.3 42 129-170 20-61 (63)
95 2glo_A Brinker CG9653-PA; prot 76.8 2.2 7.5E-05 29.1 3.4 45 81-126 3-47 (59)
96 2jee_A YIIU; FTSZ, septum, coi 76.3 9 0.00031 28.8 6.8 36 137-172 25-67 (81)
97 3s4r_A Vimentin; alpha-helix, 75.8 11 0.00039 28.7 7.5 56 119-175 37-92 (93)
98 3gp4_A Transcriptional regulat 75.1 25 0.00085 28.4 9.9 80 79-173 36-115 (142)
99 1ci6_A Transcription factor AT 73.9 14 0.00048 26.0 7.1 40 131-170 22-61 (63)
100 3gpv_A Transcriptional regulat 72.6 16 0.00054 29.7 8.2 81 80-175 51-131 (148)
101 1hjb_A Ccaat/enhancer binding 72.6 12 0.0004 28.4 6.7 47 129-175 33-79 (87)
102 3m91_A Proteasome-associated A 72.5 15 0.00053 25.1 6.7 38 135-172 12-49 (51)
103 2wt7_B Transcription factor MA 70.2 18 0.00062 27.6 7.3 51 123-173 37-89 (90)
104 2elh_A CG11849-PA, LD40883P; s 69.9 11 0.00038 27.5 6.1 43 78-125 17-59 (87)
105 1jnm_A Proto-oncogene C-JUN; B 69.9 7 0.00024 27.4 4.7 37 133-169 23-59 (62)
106 2jee_A YIIU; FTSZ, septum, coi 68.7 20 0.0007 26.8 7.2 43 133-175 14-63 (81)
107 1go4_E MAD1 (mitotic arrest de 68.2 10 0.00035 29.6 5.7 33 139-171 12-44 (100)
108 1dh3_A Transcription factor CR 68.0 8.9 0.0003 26.5 4.8 25 149-173 25-49 (55)
109 3hnw_A Uncharacterized protein 66.9 21 0.00072 29.1 7.7 42 133-174 83-124 (138)
110 3trt_A Vimentin; cytoskeleton, 65.2 26 0.00087 25.2 7.1 52 118-174 26-77 (77)
111 1tc3_C Protein (TC3 transposas 64.9 9.5 0.00033 23.5 4.2 40 83-127 5-44 (51)
112 2dgc_A Protein (GCN4); basic d 64.0 34 0.0012 24.1 7.4 32 145-176 29-60 (63)
113 1r8e_A Multidrug-efflux transp 61.0 22 0.00075 31.0 7.3 67 81-168 42-108 (278)
114 3hh0_A Transcriptional regulat 60.9 39 0.0013 27.4 8.3 78 80-175 39-116 (146)
115 3m9b_A Proteasome-associated A 60.8 12 0.0004 33.8 5.4 48 134-181 56-103 (251)
116 1jko_C HIN recombinase, DNA-in 60.7 3.5 0.00012 26.1 1.5 42 83-129 5-46 (52)
117 3hug_A RNA polymerase sigma fa 60.7 16 0.00055 26.7 5.4 45 84-133 38-82 (92)
118 4dzn_A Coiled-coil peptide CC- 60.0 19 0.00065 21.9 4.5 24 150-173 6-29 (33)
119 1gu4_A CAAT/enhancer binding p 59.8 27 0.00094 25.8 6.4 36 132-167 36-71 (78)
120 1xsv_A Hypothetical UPF0122 pr 59.5 25 0.00086 27.1 6.6 47 83-134 25-71 (113)
121 1s7o_A Hypothetical UPF0122 pr 58.8 32 0.0011 26.6 7.1 47 83-134 22-68 (113)
122 3s9g_A Protein hexim1; cyclin 58.4 25 0.00085 27.4 6.1 22 148-169 67-88 (104)
123 1p4w_A RCSB; solution structur 57.9 22 0.00075 26.9 5.9 46 82-133 33-78 (99)
124 1gd2_E Transcription factor PA 57.9 22 0.00074 25.9 5.5 51 125-175 14-65 (70)
125 1a93_B MAX protein, coiled coi 55.9 24 0.00084 22.2 4.6 22 149-170 10-31 (34)
126 3hnw_A Uncharacterized protein 54.8 33 0.0011 27.9 6.8 34 139-172 82-115 (138)
127 1nkp_B MAX protein, MYC proto- 54.1 28 0.00096 25.4 5.7 32 141-172 49-80 (83)
128 1deb_A APC protein, adenomatou 53.6 33 0.0011 23.5 5.4 35 141-175 5-46 (54)
129 3iv1_A Tumor susceptibility ge 53.4 63 0.0022 24.0 7.4 42 127-168 13-54 (78)
130 1je8_A Nitrate/nitrite respons 53.1 19 0.00064 25.9 4.6 47 82-134 20-66 (82)
131 1nkp_A C-MYC, MYC proto-oncoge 51.9 39 0.0013 25.2 6.3 33 141-173 54-86 (88)
132 3c57_A Two component transcrip 51.8 15 0.0005 27.3 3.9 46 83-134 27-72 (95)
133 3tnu_B Keratin, type II cytosk 50.7 27 0.00092 27.8 5.5 31 140-170 37-67 (129)
134 1fse_A GERE; helix-turn-helix 48.6 24 0.00082 24.0 4.4 47 82-134 10-56 (74)
135 2o8x_A Probable RNA polymerase 48.6 15 0.00051 24.8 3.3 46 83-133 15-60 (70)
136 3m91_A Proteasome-associated A 48.0 50 0.0017 22.5 5.7 39 138-176 8-46 (51)
137 1go4_E MAD1 (mitotic arrest de 48.0 59 0.002 25.2 6.8 19 158-176 73-91 (100)
138 1g6u_A Domain swapped dimer; d 47.8 47 0.0016 21.7 5.2 23 153-175 20-42 (48)
139 1q06_A Transcriptional regulat 47.5 1E+02 0.0035 24.3 9.0 73 80-167 35-107 (135)
140 3mq7_A Bone marrow stromal ant 46.4 48 0.0016 26.5 6.1 59 116-174 41-106 (121)
141 1iuf_A Centromere ABP1 protein 45.2 32 0.0011 27.5 5.3 48 78-128 6-60 (144)
142 1nlw_A MAD protein, MAX dimeri 44.8 49 0.0017 24.3 5.8 28 142-169 50-77 (80)
143 2vz4_A Tipal, HTH-type transcr 44.7 63 0.0021 24.4 6.6 66 80-166 36-101 (108)
144 3ra3_B P2F; coiled coil domain 44.3 28 0.00094 20.4 3.3 20 153-172 7-26 (28)
145 3s9g_A Protein hexim1; cyclin 44.2 70 0.0024 24.8 6.6 40 128-167 54-93 (104)
146 3mzy_A RNA polymerase sigma-H 44.0 28 0.00096 26.9 4.6 43 83-131 109-151 (164)
147 1x3u_A Transcriptional regulat 43.9 17 0.00058 25.3 3.0 45 84-134 17-61 (79)
148 1dh3_A Transcription factor CR 43.7 75 0.0026 21.6 7.6 38 129-169 15-52 (55)
149 4dzn_A Coiled-coil peptide CC- 42.5 55 0.0019 19.8 4.8 25 142-166 5-29 (33)
150 3nmd_A CGMP dependent protein 42.4 86 0.0029 22.9 6.5 30 146-175 40-69 (72)
151 1deb_A APC protein, adenomatou 41.9 81 0.0028 21.5 6.5 10 157-166 14-23 (54)
152 1q08_A Zn(II)-responsive regul 41.7 64 0.0022 23.6 6.1 66 107-173 8-73 (99)
153 3v86_A De novo design helix; c 41.4 40 0.0014 19.6 3.6 22 151-172 5-26 (27)
154 3qao_A LMO0526 protein, MERR-l 41.0 97 0.0033 27.2 8.2 76 80-176 38-113 (249)
155 1r8d_A Transcription activator 40.8 1E+02 0.0035 23.1 7.3 66 80-166 37-102 (109)
156 1a93_B MAX protein, coiled coi 40.0 47 0.0016 20.9 4.1 22 133-154 8-29 (34)
157 3mq7_A Bone marrow stromal ant 39.8 93 0.0032 24.8 6.9 41 133-173 72-112 (121)
158 3kin_B Kinesin heavy chain; mo 39.8 47 0.0016 26.1 5.3 32 142-173 85-116 (117)
159 4b4t_K 26S protease regulatory 39.7 48 0.0016 31.8 6.3 49 127-175 44-92 (428)
160 2rnj_A Response regulator prot 38.7 24 0.00083 25.6 3.2 47 82-134 28-74 (91)
161 3i5g_B Myosin regulatory light 38.6 54 0.0018 25.8 5.6 42 79-120 5-51 (153)
162 3a5t_A Transcription factor MA 38.4 2.2 7.6E-05 33.8 -2.8 61 115-175 27-94 (107)
163 2rn7_A IS629 ORFA; helix, all 37.5 37 0.0013 25.2 4.2 45 81-125 4-51 (108)
164 1nlw_A MAD protein, MAX dimeri 37.4 64 0.0022 23.6 5.4 31 145-175 46-76 (80)
165 3lph_A Protein REV; helix-loop 37.3 19 0.00065 26.4 2.3 35 89-137 18-52 (72)
166 3w03_C DNA repair protein XRCC 36.8 78 0.0027 27.1 6.5 36 137-172 143-178 (184)
167 1t6f_A Geminin; coiled-coil, c 36.0 83 0.0028 20.0 4.8 24 141-164 9-32 (37)
168 3m48_A General control protein 35.7 53 0.0018 20.5 3.8 21 154-174 8-28 (33)
169 1ku3_A Sigma factor SIGA; heli 34.9 64 0.0022 22.1 4.9 48 83-133 10-59 (73)
170 3a7p_A Autophagy protein 16; c 34.4 1.4E+02 0.005 24.7 7.5 37 141-177 105-141 (152)
171 3swk_A Vimentin; cytoskeleton, 33.9 96 0.0033 23.0 5.9 42 133-174 43-84 (86)
172 1nkp_B MAX protein, MYC proto- 33.9 68 0.0023 23.3 5.0 32 145-176 46-77 (83)
173 3he5_B Synzip2; heterodimeric 33.8 1E+02 0.0035 20.4 5.6 19 156-174 27-45 (52)
174 3ra3_A P1C; coiled coil domain 33.6 27 0.00093 20.4 2.1 24 150-173 4-27 (28)
175 1rp3_A RNA polymerase sigma fa 32.6 33 0.0011 28.4 3.5 46 83-133 187-232 (239)
176 1nkp_A C-MYC, MYC proto-oncoge 32.5 96 0.0033 23.0 5.7 31 135-165 55-85 (88)
177 3ol1_A Vimentin; structural ge 32.0 1.3E+02 0.0046 23.4 6.8 44 133-176 63-106 (119)
178 2oto_A M protein; helical coil 31.9 1.7E+02 0.0058 23.6 7.7 19 126-144 23-41 (155)
179 2eqb_B RAB guanine nucleotide 31.9 1.5E+02 0.0052 22.8 6.8 12 158-169 81-92 (97)
180 4h22_A Leucine-rich repeat fli 31.8 1.5E+02 0.0052 23.0 6.8 47 129-175 34-80 (103)
181 3oja_B Anopheles plasmodium-re 31.6 1.1E+02 0.0037 29.5 7.5 31 144-174 549-579 (597)
182 3w03_C DNA repair protein XRCC 31.6 73 0.0025 27.3 5.5 33 138-170 151-183 (184)
183 2p7v_B Sigma-70, RNA polymeras 31.5 39 0.0013 23.0 3.2 44 83-127 5-48 (68)
184 2wuj_A Septum site-determining 31.5 76 0.0026 21.7 4.6 26 148-173 29-54 (57)
185 2wuj_A Septum site-determining 31.5 44 0.0015 23.0 3.4 28 141-168 29-56 (57)
186 1tty_A Sigma-A, RNA polymerase 31.5 64 0.0022 23.1 4.5 48 83-133 18-67 (87)
187 1uii_A Geminin; human, DNA rep 31.0 1.7E+02 0.0057 21.9 7.4 29 139-167 46-74 (83)
188 3ulq_B Transcriptional regulat 30.4 75 0.0026 23.3 4.8 45 81-131 27-71 (90)
189 1u78_A TC3 transposase, transp 30.2 56 0.0019 24.8 4.3 41 82-127 5-45 (141)
190 2l5b_A Activator of apoptosis 29.8 7 0.00024 23.8 -0.9 7 281-287 6-12 (32)
191 2lv7_A Calcium-binding protein 29.8 92 0.0031 22.9 5.3 47 80-126 26-79 (100)
192 1p9i_A Cortexillin I/GCN4 hybr 29.8 86 0.0029 18.7 3.9 23 145-167 5-27 (31)
193 2oqq_A Transcription factor HY 29.7 1.1E+02 0.0037 20.1 4.7 23 137-159 15-37 (42)
194 1fmh_B General control protein 29.1 87 0.003 18.9 3.9 26 141-166 3-28 (33)
195 3swk_A Vimentin; cytoskeleton, 29.1 60 0.002 24.2 4.0 31 143-173 4-34 (86)
196 2v66_B Nuclear distribution pr 28.9 2.1E+02 0.0072 22.4 7.6 29 142-170 38-66 (111)
197 3oja_B Anopheles plasmodium-re 28.6 1.2E+02 0.0041 29.2 7.2 10 161-170 559-568 (597)
198 1or7_A Sigma-24, RNA polymeras 28.5 52 0.0018 26.4 3.9 45 84-133 141-185 (194)
199 2v71_A Nuclear distribution pr 28.5 1.9E+02 0.0066 24.7 7.6 15 137-151 68-82 (189)
200 3oja_A Leucine-rich immune mol 28.5 1.4E+02 0.0047 28.2 7.5 33 140-172 429-461 (487)
201 2oxj_A Hybrid alpha/beta pepti 28.1 1.1E+02 0.0037 19.2 4.3 19 156-174 11-29 (34)
202 1dip_A Delta-sleep-inducing pe 27.8 43 0.0015 24.7 2.8 27 140-166 16-42 (78)
203 2jpc_A SSRB; DNA binding prote 27.7 38 0.0013 22.2 2.5 28 108-135 17-44 (61)
204 2rgt_A Fusion of LIM/homeobox 27.6 1.3 4.5E-05 36.7 -6.1 30 75-104 134-163 (169)
205 3c3g_A Alpha/beta peptide with 27.4 1.1E+02 0.0039 18.9 4.3 21 154-174 8-28 (33)
206 2ve7_C Kinetochore protein NUF 27.3 43 0.0015 29.8 3.5 38 139-176 141-178 (250)
207 2zhg_A Redox-sensitive transcr 27.0 2.1E+02 0.0073 23.0 7.5 36 80-128 45-80 (154)
208 1fi6_A EH domain protein REPS1 26.8 62 0.0021 23.2 3.7 43 83-125 2-49 (92)
209 2w6a_A ARF GTPase-activating p 26.7 1.7E+02 0.0058 20.6 5.8 27 147-173 35-61 (63)
210 3a2a_A Voltage-gated hydrogen 26.6 1.4E+02 0.0047 20.8 5.1 35 140-174 12-46 (58)
211 2xi8_A Putative transcription 26.4 24 0.00083 23.1 1.3 23 107-129 17-39 (66)
212 2v4h_A NF-kappa-B essential mo 26.4 2.2E+02 0.0077 22.3 7.0 34 139-172 62-102 (110)
213 3q4f_C DNA repair protein XRCC 25.9 1.1E+02 0.0037 26.2 5.5 26 144-169 159-184 (186)
214 2r1j_L Repressor protein C2; p 25.7 26 0.0009 23.0 1.3 24 107-130 21-44 (68)
215 2q0o_A Probable transcriptiona 25.6 85 0.0029 26.6 5.0 48 81-134 173-220 (236)
216 2x48_A CAG38821; archeal virus 25.5 57 0.0019 21.0 3.0 36 86-126 18-53 (55)
217 3u06_A Protein claret segregat 25.4 1.8E+02 0.006 27.7 7.6 49 128-176 13-61 (412)
218 4etp_A Kinesin-like protein KA 24.6 1.9E+02 0.0064 27.3 7.6 47 130-176 15-61 (403)
219 3bd1_A CRO protein; transcript 24.4 30 0.001 24.1 1.5 23 107-129 14-36 (79)
220 3clo_A Transcriptional regulat 24.3 91 0.0031 26.9 5.0 48 82-135 196-243 (258)
221 2fxo_A Myosin heavy chain, car 24.2 2.6E+02 0.0089 21.9 7.4 48 129-176 73-120 (129)
222 1bb1_B Designed, thermostable 24.2 1.3E+02 0.0045 18.5 4.5 25 149-173 5-29 (36)
223 3gyk_A 27KDA outer membrane pr 23.9 2.2E+02 0.0074 22.2 6.9 42 89-130 85-126 (175)
224 3bs3_A Putative DNA-binding pr 23.9 30 0.001 23.4 1.4 23 107-129 26-48 (76)
225 1etf_B REV peptide; complex (R 23.8 41 0.0014 19.9 1.7 12 126-137 7-18 (26)
226 2cqq_A RSGI RUH-037, DNAJ homo 23.7 1.5E+02 0.0053 21.1 5.3 42 81-122 8-49 (72)
227 3sja_C Golgi to ER traffic pro 23.7 1.1E+02 0.0037 21.9 4.3 19 158-176 37-55 (65)
228 1zug_A Phage 434 CRO protein; 23.6 29 0.00099 23.1 1.3 24 107-130 19-42 (71)
229 3m9b_A Proteasome-associated A 23.4 1E+02 0.0034 27.7 5.0 30 138-167 67-96 (251)
230 1wlq_A Geminin; coiled-coil; 2 23.4 2.2E+02 0.0074 21.3 6.1 26 140-165 39-64 (83)
231 2pmy_A RAS and EF-hand domain- 23.3 50 0.0017 23.4 2.6 44 83-126 20-68 (91)
232 3c3f_A Alpha/beta peptide with 23.2 1.4E+02 0.0049 18.6 4.3 21 154-174 9-29 (34)
233 3vmx_A Voltage-gated hydrogen 22.9 1.8E+02 0.0061 19.6 6.2 35 140-174 5-39 (48)
234 2v71_A Nuclear distribution pr 22.7 2.7E+02 0.0092 23.8 7.4 16 144-159 93-108 (189)
235 3ilw_A DNA gyrase subunit A; D 22.4 3E+02 0.01 26.8 8.6 73 104-176 385-460 (470)
236 1uo4_A General control protein 22.3 1.2E+02 0.0042 18.9 3.8 22 153-174 8-29 (34)
237 1uii_A Geminin; human, DNA rep 21.9 2.5E+02 0.0086 20.9 6.5 29 146-174 46-74 (83)
238 2xdj_A Uncharacterized protein 21.9 1.5E+02 0.0052 21.9 5.0 34 143-176 24-57 (83)
239 1adr_A P22 C2 repressor; trans 21.8 34 0.0012 23.1 1.3 24 107-130 21-44 (76)
240 3bni_A Putative TETR-family tr 21.5 16 0.00055 30.3 -0.5 41 89-130 49-89 (229)
241 3o0z_A RHO-associated protein 21.5 2.9E+02 0.0099 23.2 7.3 13 162-174 99-111 (168)
242 2b5a_A C.BCLI; helix-turn-heli 21.1 36 0.0012 23.1 1.4 23 107-129 26-48 (77)
243 3lay_A Zinc resistance-associa 21.1 3.6E+02 0.012 22.5 7.9 17 82-98 66-82 (175)
244 1kd8_B GABH BLL, GCN4 acid bas 21.0 1.7E+02 0.0057 18.5 4.9 22 146-167 8-29 (36)
245 1l3l_A Transcriptional activat 20.9 1.2E+02 0.0042 25.5 5.0 48 81-134 171-218 (234)
246 2k27_A Paired box protein PAX- 20.6 1.3E+02 0.0044 23.7 4.8 47 75-126 17-63 (159)
247 3he5_A Synzip1; heterodimeric 20.4 1.9E+02 0.0064 18.9 6.2 38 136-173 7-44 (49)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=141.38 Aligned_cols=63 Identities=33% Similarity=0.574 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
..+.+++|++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 344567777899999999999999999999999999999999999999999999999999864
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-20 Score=140.34 Aligned_cols=62 Identities=26% Similarity=0.431 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.+.+|+|++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 44567778899999999999999999999999999999999999999999999999999865
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=1.1e-19 Score=138.54 Aligned_cols=65 Identities=29% Similarity=0.575 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLE 138 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~ 138 (293)
++..+++|++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 34557788889999999999999999999999999999999999999999999999999997643
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-20 Score=141.17 Aligned_cols=63 Identities=25% Similarity=0.368 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
..+.+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345567778899999999999999999999999999999999999999999999999999865
No 5
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8.6e-20 Score=135.64 Aligned_cols=63 Identities=32% Similarity=0.584 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
++..+++|++||.+|+..||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 344577888899999999999999999999999999999999999999999999999999864
No 6
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.2e-19 Score=134.93 Aligned_cols=62 Identities=40% Similarity=0.667 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
...+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34567788999999999999999999999999999999999999999999999999999864
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=137.73 Aligned_cols=63 Identities=27% Similarity=0.534 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
...+++|++||.+|+..||..|..++||+..++.+||..|||+++||+|||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 445778888999999999999999999999999999999999999999999999999998653
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=4.9e-20 Score=137.08 Aligned_cols=63 Identities=29% Similarity=0.544 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
+...+++|++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 344577888899999999999999999999999999999999999999999999999999864
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.79 E-value=1.1e-19 Score=132.52 Aligned_cols=60 Identities=33% Similarity=0.640 Sum_probs=55.7
Q ss_pred CCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.+++|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 467788899999999999999999999999999999999999999999999999999864
No 10
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.79 E-value=2.3e-19 Score=135.88 Aligned_cols=63 Identities=32% Similarity=0.466 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLE 138 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~ 138 (293)
+.+++|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+.+
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 445667789999999999999999999999999999999999999999999999999987654
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.5e-19 Score=137.78 Aligned_cols=63 Identities=25% Similarity=0.433 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
++..+++|++||.+|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+++
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 345577888899999999999999999999999999999999999999999999999999865
No 12
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=1.4e-19 Score=142.15 Aligned_cols=66 Identities=32% Similarity=0.559 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKD 140 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~ 140 (293)
...+++|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|||++..++.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 345667788999999999999999999999999999999999999999999999999999876543
No 13
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.78 E-value=4.2e-19 Score=134.41 Aligned_cols=63 Identities=37% Similarity=0.530 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
...+++|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 345677888999999999999999999999999999999999999999999999999998764
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1e-19 Score=135.16 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
+...+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 344567788899999999999999999999999999999999999999999999999999864
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-19 Score=135.02 Aligned_cols=63 Identities=22% Similarity=0.445 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
+...+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|++.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 345577888899999999999999999999999999999999999999999999999999864
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=6.5e-20 Score=133.22 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.+++|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 466778899999999999999999999999999999999999999999999999999863
No 17
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=1.1e-19 Score=139.12 Aligned_cols=60 Identities=12% Similarity=0.224 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhh----CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFEL----GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~----~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
...+|+|+.||.+|+..||..|+. ++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345677778999999999999999 999999999999999999999999999999999875
No 18
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.8e-20 Score=135.43 Aligned_cols=63 Identities=32% Similarity=0.519 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
++..+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 345577888899999999999999999999999999999999999999999999999998754
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=3.3e-19 Score=127.60 Aligned_cols=57 Identities=32% Similarity=0.522 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
+++|++||.+|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467888999999999999999999999999999999999999999999999999987
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.77 E-value=2.7e-19 Score=129.57 Aligned_cols=58 Identities=33% Similarity=0.598 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
.+++|++||.+|+..||..|..++||+..++.+||..|||+++||+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3677888999999999999999999999999999999999999999999999999997
No 21
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.4e-19 Score=136.30 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=55.8
Q ss_pred CCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 79 rkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
.+|++||.+|+.+||..|..++||+..+|++||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999998654
No 22
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=4.8e-19 Score=131.08 Aligned_cols=61 Identities=33% Similarity=0.510 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
.+++|++||.+|+..||..|..++||+..++.+||..|||++++|+|||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3577888999999999999999999999999999999999999999999999999998764
No 23
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=4.8e-19 Score=135.22 Aligned_cols=62 Identities=26% Similarity=0.481 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.+.+++|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|++.
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 44566777899999999999999999999999999999999999999999999999999865
No 24
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=137.10 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhC----CCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELG----NKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~----~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
+..+++|++||.+|+.+||..|..+ +||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 3456777789999999999999999 9999999999999999999999999999999999864
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.77 E-value=3.3e-19 Score=132.07 Aligned_cols=60 Identities=37% Similarity=0.676 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
++++|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 356788899999999999999999999999999999999999999999999999999865
No 26
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=133.80 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.+||++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 35677899999999999999999999999999999999999999999999999999865
No 27
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=6.5e-19 Score=131.65 Aligned_cols=59 Identities=29% Similarity=0.531 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHhHhh-CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNFEL-GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.++|++||.+|+..||..|.. ++||+..+|.+||..|||+++||+|||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467888999999999999996 99999999999999999999999999999999999865
No 28
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.76 E-value=3.5e-19 Score=136.28 Aligned_cols=61 Identities=34% Similarity=0.548 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
..+++|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|++.
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3467788899999999999999999999999999999999999999999999999999864
No 29
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=2e-19 Score=137.88 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhh-----CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFEL-----GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
...+|+|+.||.+|+..|| .|.. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4456777789999999999 7999 999999999999999999999999999999999875
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=5.1e-19 Score=127.69 Aligned_cols=58 Identities=31% Similarity=0.500 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTK 135 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk 135 (293)
+++|++||.+|+..||..|..++||+..++.+||..|||++.||+|||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678889999999999999999999999999999999999999999999999999984
No 31
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.76 E-value=2.7e-19 Score=132.30 Aligned_cols=61 Identities=23% Similarity=0.517 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
.+++|++||..|+..||..|..++||+..++.+||..|||+++||+|||||||+|+|+++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 4677888999999999999999999999999999999999999999999999999998763
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=7.3e-19 Score=130.10 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
.+++|++||..|+..||..|..++||+..++.+||..|||++++|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 3567788999999999999999999999999999999999999999999999999998753
No 33
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.76 E-value=8.3e-19 Score=131.60 Aligned_cols=61 Identities=28% Similarity=0.495 Sum_probs=57.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
..+++|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 4467788899999999999999999999999999999999999999999999999999864
No 34
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-19 Score=131.78 Aligned_cols=62 Identities=29% Similarity=0.523 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
++.+++|++||..|+..||..|..++||+..++.+||..|||++.+|+|||||||+|+|+++
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 44567778899999999999999999999999999999999999999999999999999865
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.76 E-value=6.3e-19 Score=136.69 Aligned_cols=62 Identities=35% Similarity=0.679 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
+..+++|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 34567788899999999999999999999999999999999999999999999999999853
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=1.1e-18 Score=130.82 Aligned_cols=59 Identities=27% Similarity=0.490 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHhHhh-CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNFEL-GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
+++|++||.+|+.+||..|.. ++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999995 99999999999999999999999999999999999865
No 37
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=3.7e-19 Score=130.74 Aligned_cols=60 Identities=30% Similarity=0.508 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.+++|++||.+|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 467788899999999999999999999999999999999999999999999999999865
No 38
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-19 Score=130.11 Aligned_cols=61 Identities=30% Similarity=0.460 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLE 138 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~ 138 (293)
+++|++||.+|+..||..|..++||+..++.+||..|||+++||+|||||||+|+|++..+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5778889999999999999999999999999999999999999999999999999987643
No 39
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.75 E-value=4.9e-19 Score=139.58 Aligned_cols=64 Identities=27% Similarity=0.396 Sum_probs=57.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEK 139 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~ 139 (293)
..+++|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+++-
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 3457788899999999999999999999999999999999999999999999999999987543
No 40
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=124.48 Aligned_cols=56 Identities=38% Similarity=0.511 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
+++|++||.+|+..||..|..++||+..++.+||..|||++.||+|||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 56778899999999999999999999999999999999999999999999999975
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=124.36 Aligned_cols=54 Identities=35% Similarity=0.627 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHH
Q 022702 82 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTK 135 (293)
Q Consensus 82 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk 135 (293)
+.||.+|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 469999999999999999999999999999999999999999999999999985
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.74 E-value=1e-18 Score=126.14 Aligned_cols=57 Identities=30% Similarity=0.577 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467899999999999999999999999999999999999999999999999999864
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.4e-18 Score=137.12 Aligned_cols=62 Identities=32% Similarity=0.569 Sum_probs=55.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
..+++|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|++..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 44677888999999999999999999999999999999999999999999999999998764
No 44
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.4e-18 Score=128.74 Aligned_cols=63 Identities=22% Similarity=0.187 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFEL---GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
+..+++|++|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||+|||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 445677888999999999999987 999999999999999999999999999999999998653
No 45
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.2e-18 Score=136.14 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=53.9
Q ss_pred CCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
+.++||.+||.+||..|..++||+..+|.+||..|||+++||+|||||||+|||+++
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 445899999999999999999999999999999999999999999999999999854
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=131.85 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.+.|++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 44578899999999999999999999999999999999999999999999999999865
No 47
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.74 E-value=1.3e-18 Score=125.64 Aligned_cols=58 Identities=29% Similarity=0.496 Sum_probs=48.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
+.+++|++||.+|+.+||..|..++||+..++.+||..|||++.||+|||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 3456677899999999999999999999999999999999999999999999999976
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=129.21 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
.++.|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 356788899999999999999999999999999999999999999999999999999865
No 49
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=5.7e-18 Score=133.14 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhC---------------CCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG---------------LQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lg---------------L~~~qVkvWFQNRRaK~Krk~ 136 (293)
+.+.+|+|++|+.+|+.+||..|..++||+..+|.+||..|| |++.+|+|||||||+|+|++.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 345567778899999999999999999999999999999999 999999999999999999865
No 50
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.72 E-value=5e-18 Score=122.32 Aligned_cols=56 Identities=29% Similarity=0.389 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHH
Q 022702 80 KKRRLNMEQVKTLEKNFEL---GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTK 135 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk 135 (293)
||++|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4678999999999999999 9999999999999999999999999999999999873
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.72 E-value=3.5e-18 Score=127.90 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=57.3
Q ss_pred CCCCCCCCHHHHHHHHHhH---hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNF---ELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLE 138 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~ 138 (293)
+++|++|+.+|+.+||.+| ..++||+..+|..||..+||++.||+|||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5778889999999999999 999999999999999999999999999999999999987644
No 52
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.5e-18 Score=130.36 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHhH-hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNF-ELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTK 135 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F-~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk 135 (293)
.++|++++.+|+..||..| ..++||+..+|.+||..|||+++||+|||||||+|||+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4567789999999999999 999999999999999999999999999999999999864
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.72 E-value=8.1e-18 Score=129.85 Aligned_cols=61 Identities=30% Similarity=0.447 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHhH---hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNF---ELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLE 138 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~ 138 (293)
+|+|++|+.+|+.+||.+| ..++||+..+|.+||..+||+++||+|||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5778889999999999999 899999999999999999999999999999999999987643
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=130.42 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 79 rkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
+++++||.+||.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3455699999999999999999999999999999999999999999999999999864
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.71 E-value=9.4e-18 Score=129.05 Aligned_cols=63 Identities=29% Similarity=0.315 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFEL---GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
+...+++|++|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||+|||||||+|+|+..
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 3455677788999999999999988 59999999999999999999999999999999998754
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=3.1e-18 Score=124.95 Aligned_cols=58 Identities=29% Similarity=0.451 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHhH---hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 77 AGEKKRRLNMEQVKTLEKNF---ELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 77 ~krkr~rft~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
++++|++|+.+|+.+||.+| ..++||+..++.+||..+||++.||+|||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778889999999999999 99999999999999999999999999999999999886
No 57
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.70 E-value=6.3e-18 Score=129.88 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHH
Q 022702 78 GEKKRRLNMEQVKTLEKNFEL---GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLE 138 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~ 138 (293)
+++|++|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||+|||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 345667999999999999999 9999999999999999999999999999999999987644
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.69 E-value=1.9e-17 Score=128.06 Aligned_cols=59 Identities=27% Similarity=0.355 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFEL---GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
.++++|++|+.+|+.+||.+|.. ++||+..+|.+||..+||+++||+|||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34566778999999999999999 999999999999999999999999999999999873
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.69 E-value=9e-18 Score=141.98 Aligned_cols=61 Identities=26% Similarity=0.476 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTK 135 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk 135 (293)
.+.+|+|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+||+
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3446667789999999999999999999999999999999999999999999999999985
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=121.72 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHH
Q 022702 84 LNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQ 136 (293)
Q Consensus 84 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~ 136 (293)
-|.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|||+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.68 E-value=1.7e-17 Score=142.14 Aligned_cols=61 Identities=26% Similarity=0.410 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTK 135 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk 135 (293)
.+.+|+|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3456777789999999999999999999999999999999999999999999999999985
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.68 E-value=1.6e-17 Score=143.15 Aligned_cols=63 Identities=25% Similarity=0.341 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
.+.+|+|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+||+..
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 445667778999999999999999999999999999999999999999999999999998763
No 63
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=124.24 Aligned_cols=55 Identities=42% Similarity=0.608 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
.+|..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++.
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 4799999999999999999999999999999999999999999999999998764
No 64
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=128.06 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHh---------------------CCCcchhhhhhhhhHHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARAL---------------------GLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~l---------------------gL~~~qVkvWFQNRRaK~Kr 134 (293)
..+|.|++|+..|+.+||..|+.++||+..+|++||..| +|++.+|+|||||||+|+|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 456777789999999999999999999999999999999 79999999999999999998
Q ss_pred HH
Q 022702 135 KQ 136 (293)
Q Consensus 135 k~ 136 (293)
++
T Consensus 85 ~~ 86 (102)
T 2da6_A 85 RQ 86 (102)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.67 E-value=5.5e-17 Score=137.59 Aligned_cols=60 Identities=22% Similarity=0.420 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
.+++|+|++|+.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345667778999999999999999999999999999999999999999999999999986
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=9.8e-17 Score=118.97 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhh-CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFEL-GNKLEPERKMQLARALGLQPRQVAIWFQNRRARW 132 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~ 132 (293)
+..+|.|+.|+.+||..|+..|+. +.||+...|..||++|||++++|+|||||||.-.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 455778888999999999999999 9999999999999999999999999999999753
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6e-17 Score=118.95 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 81 KRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 81 r~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
+..++.+|+..||..|..++||+..+|.+||..|||+++||+|||||||||.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 345679999999999999999999999999999999999999999999998765
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=4.6e-17 Score=119.83 Aligned_cols=49 Identities=27% Similarity=0.447 Sum_probs=46.0
Q ss_pred HHHHHHHHHhH-hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 86 MEQVKTLEKNF-ELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 86 ~~Ql~~LE~~F-~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
..|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45799999999 67999999999999999999999999999999999985
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.63 E-value=1.6e-16 Score=135.56 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=56.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTK 135 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk 135 (293)
+.+|+|++|+..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 456677889999999999999999999999999999999999999999999999999973
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.63 E-value=7.6e-17 Score=128.26 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=53.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHH------------------hC---CCcchhhhhhhhhHHHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARA------------------LG---LQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~------------------lg---L~~~qVkvWFQNRRaK~Kr 134 (293)
+.+|+|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+++|+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~ 87 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 87 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHH
Confidence 44566777999999999999999999999999999999 88 9999999999999999988
Q ss_pred HHH
Q 022702 135 KQL 137 (293)
Q Consensus 135 k~~ 137 (293)
++.
T Consensus 88 k~~ 90 (99)
T 1lfb_A 88 RHK 90 (99)
T ss_dssp CC-
T ss_pred hch
Confidence 763
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=2.8e-16 Score=116.23 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHhHh---hCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHH
Q 022702 82 RRLNMEQVKTLEKNFE---LGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKD 140 (293)
Q Consensus 82 ~rft~~Ql~~LE~~F~---~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~ 140 (293)
.+|+.+|+.+||.+|. .++||+..+|.+||..+||+++||++||||||+|+|+..+++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 3799999999999999 9999999999999999999999999999999999999776554
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.61 E-value=2.1e-16 Score=135.46 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 74 GSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 74 ~~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
+...+|+|++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3455677888999999999999999999999999999999999999999999999999998653
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=107.54 Aligned_cols=55 Identities=27% Similarity=0.280 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHhHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 83 RLNMEQVKTLEKNFEL---GNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
-|+.+++.+|+.+|.. ++||+..+|.+||..+||+++||++||||||+|+|+...
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 4899999999999988 899999999999999999999999999999999987543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.43 E-value=2.5e-14 Score=126.36 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhC---------------------CCcchhhhhhhhhHHHHH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG---------------------LQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lg---------------------L~~~qVkvWFQNRRaK~K 133 (293)
.+.+|+|+.|+..|+..||..|..++||+..+|++||..|+ |++.+|+|||||||+|+|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 34456677799999999999999999999999999999999 999999999999999877
Q ss_pred H
Q 022702 134 T 134 (293)
Q Consensus 134 r 134 (293)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=102.23 Aligned_cols=46 Identities=17% Similarity=0.454 Sum_probs=44.2
Q ss_pred HHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHH
Q 022702 86 MEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRAR 131 (293)
Q Consensus 86 ~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK 131 (293)
.+|+..||.+|..+++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=117.29 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=51.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhC---------------------CCcchhhhhhhhhHHHH
Q 022702 76 QAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALG---------------------LQPRQVAIWFQNRRARW 132 (293)
Q Consensus 76 ~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lg---------------------L~~~qVkvWFQNRRaK~ 132 (293)
+.+|.|+.|+..|+.+||..|..++||+..+|++||..+| |++.+|++||||||++.
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3455566699999999999999999999999999999998 89999999999999863
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.30 E-value=6.1e-13 Score=125.83 Aligned_cols=55 Identities=29% Similarity=0.489 Sum_probs=51.6
Q ss_pred CCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 79 rkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
+.++.|+..|+..||+.|..++||+..+|.+||.++||+++||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3455699999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.99 E-value=1.5e-11 Score=80.84 Aligned_cols=23 Identities=48% Similarity=1.060 Sum_probs=19.9
Q ss_pred chhhhhhhhhHHHHHHHHHHHHH
Q 022702 119 RQVAIWFQNRRARWKTKQLEKDY 141 (293)
Q Consensus 119 ~qVkvWFQNRRaK~Krk~~~~~~ 141 (293)
+||+|||||||||||+++.+..+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 69999999999999998876543
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.88 E-value=0.042 Score=40.54 Aligned_cols=39 Identities=28% Similarity=0.465 Sum_probs=36.5
Q ss_pred HHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 022702 89 VKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQN 127 (293)
Q Consensus 89 l~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQN 127 (293)
.+.|+.+|...+.+.......|+.+.+|+..||+-||--
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 368999999999999999999999999999999999953
No 80
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=92.37 E-value=0.48 Score=35.51 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022702 128 RRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREV 177 (293)
Q Consensus 128 RRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~~ 177 (293)
||.|.|++..+. .+......|..||..|+.+++.|..|+..|+.-..
T Consensus 28 krSR~krk~r~~---e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666544 35577888999999999999999999999987653
No 81
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=92.08 E-value=0.48 Score=36.26 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022702 128 RRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREV 177 (293)
Q Consensus 128 RRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~~ 177 (293)
||.|.|++..+. .+......|..||..|+.+++.|..|+..|+.-..
T Consensus 28 rrSR~krk~r~~---e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655444 34566777888888888888888888888877653
No 82
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.94 E-value=0.42 Score=35.16 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 135 KQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 135 k~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
+.++.....|...+..+..||..|+.++..|..|+..++
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555556666666667777777777777777776553
No 83
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=86.69 E-value=0.21 Score=37.58 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHhHhhC-CCCCHHHHHHHHHHhCCCcchhhhhhh
Q 022702 81 KRRLNMEQVKTLEKNFELG-NKLEPERKMQLARALGLQPRQVAIWFQ 126 (293)
Q Consensus 81 r~rft~~Ql~~LE~~F~~~-~~p~~~~r~~LA~~lgL~~~qVkvWFQ 126 (293)
|++|+.++....-..+... .+ ...++|+.+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 4568888766555445322 21 245899999999999999974
No 84
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.49 E-value=3.1 Score=29.58 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
....|..+.+.|..+|..|..+...|+.|+..|+.-
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888888888888887753
No 85
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=85.71 E-value=3.9 Score=31.37 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=34.7
Q ss_pred CCCcchhhhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 115 GLQPRQVAIWFQNRRAR-------WKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 115 gL~~~qVkvWFQNRRaK-------~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
||+..+|.-|=|-||.= --+.+...+...|..+...+..+.+.|..++..+..|+..+|..
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777766665555421 11122223345555666666666666666666666666666654
No 86
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.26 E-value=3.9 Score=28.62 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
....|....+.+..+|..|..+...|+.|+..|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888888888887754
No 87
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.24 E-value=4.6 Score=28.57 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
....|..+.+.|..+|..|+.+...|+.|+..|+..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888888888888777654
No 88
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=84.15 E-value=3.6 Score=28.92 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
....|....+.|..+|..|..+...|..|+..|+...
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888889999999999999999988887653
No 89
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.99 E-value=2.2 Score=29.48 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 139 KDYDLLKRQYEAVKADREALQAQNQKLHAEI 169 (293)
Q Consensus 139 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~ 169 (293)
.++++|+.++..|++.+..|..+++.|.+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666554
No 90
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.39 E-value=5.1 Score=27.99 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 129 RARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEI 169 (293)
Q Consensus 129 RaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~ 169 (293)
|-|.+...++.....|..++..|..+...|+.++..|...+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566777788888888889999888888888887665
No 91
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=79.69 E-value=4.1 Score=29.03 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 141 YDLLKRQYEAVKADREALQAQNQKLHAE 168 (293)
Q Consensus 141 ~~~lk~~~~~l~~e~~~l~~e~~~l~~e 168 (293)
...|..+.+.|..+|..|..+...|+.+
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554443
No 92
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.50 E-value=2.9 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 146 RQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 146 ~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
..+++|+.|+..|+..+..|.+++..++...
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888999999998888888888887764
No 93
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.49 E-value=3.9 Score=31.79 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHH
Q 022702 79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRAR 131 (293)
Q Consensus 79 rkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK 131 (293)
++|++||.++...+-..+........ .+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 45778999998777666655544432 368999999999999999876653
No 94
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=77.31 E-value=11 Score=26.55 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 129 RARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIM 170 (293)
Q Consensus 129 RaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~ 170 (293)
|.+.+...++.+.+.|..++..|+.+...|+.++..|..-+.
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677778888888888888888888877776553
No 95
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=76.83 E-value=2.2 Score=29.10 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 022702 81 KRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQ 126 (293)
Q Consensus 81 r~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQ 126 (293)
|++|+.+....+...+... ........++|+.+|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 5579998876664444433 22111245899999999999999964
No 96
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.28 E-value=9 Score=28.81 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 022702 137 LEKDYDLLKRQYEAVKADREA-------LQAQNQKLHAEIMAL 172 (293)
Q Consensus 137 ~~~~~~~lk~~~~~l~~e~~~-------l~~e~~~l~~e~~~l 172 (293)
++.+++.||.++..+..+++. |..+|++|+.|...-
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 334455555555555554444 444555555554433
No 97
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.80 E-value=11 Score=28.69 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=42.1
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 119 RQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 119 ~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
.+|..|-+....+.+. --+.++..|+++++.+..++..+..+.+.|++++..+|..
T Consensus 37 ~~i~~l~~~~~~~~~~-~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 37 AELEQLKGQGKSRLGD-LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456665443433332 2466788899999999999999999999999999988864
No 98
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=75.07 E-value=25 Score=28.38 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREAL 158 (293)
Q Consensus 79 rkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l 158 (293)
..+|.|+.+++..|... ...+.+|++-..|+..+...+... .........|..+.+.+.++...|
T Consensus 36 ~g~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~~~~~~--~~~~~~~~~L~~~~~~l~~~i~~L 100 (142)
T 3gp4_A 36 SGVRKFGAEDLRWILFT-------------RQMRRAGLSIEALIDYLALFREGE--HTLEARAELLKKQRIELKNRIDVM 100 (142)
T ss_dssp TSCBCBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667999999998542 224678888888887775432211 112222334444455555555555
Q ss_pred HHHHHHHHHHHHHhh
Q 022702 159 QAQNQKLHAEIMALK 173 (293)
Q Consensus 159 ~~e~~~l~~e~~~lk 173 (293)
+...+.|...+....
T Consensus 101 ~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 101 QEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 544444444444333
No 99
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.89 E-value=14 Score=26.04 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 131 RWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIM 170 (293)
Q Consensus 131 K~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~ 170 (293)
|.+...++...+.|..++..|+.+...|+.|+..|..-+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556667888888888999999999888888876554
No 100
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=72.65 E-value=16 Score=29.73 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQ 159 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~ 159 (293)
.+|.|+.+++..|... ...+.+|++-..|+..+...+... .........|..+.+.+.++...|+
T Consensus 51 g~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~~~~~~--~~~~~~~~~l~~~~~~l~~~i~~L~ 115 (148)
T 3gpv_A 51 GDRIFNEEALKYLEMI-------------LCLKNTGMPIQKIKQFIDWSMEGD--STILHRLKLMKQQEANVLQLIQDTE 115 (148)
T ss_dssp CCEEBCHHHHHHHHHH-------------HHHHTTTCCHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999988442 234778888888888887543211 1223334556666667777777777
Q ss_pred HHHHHHHHHHHHhhhc
Q 022702 160 AQNQKLHAEIMALKSR 175 (293)
Q Consensus 160 ~e~~~l~~e~~~lk~~ 175 (293)
...+.|...+..++..
T Consensus 116 ~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 116 KNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655443
No 101
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=72.57 E-value=12 Score=28.45 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 129 RARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 129 RaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
..|.|-..++.....|..++..|+++.+.|..|+..|..-+..+-+.
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 34456667778888899999999999999999998888887766554
No 102
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=72.54 E-value=15 Score=25.10 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022702 135 KQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMAL 172 (293)
Q Consensus 135 k~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~l 172 (293)
..++.+...|..+++.|-+.-...+.+..+|..++.+|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666666666666666666666554
No 103
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=70.22 E-value=18 Score=27.62 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=41.1
Q ss_pred hhhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 123 IWFQNRRARWK--TKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 123 vWFQNRRaK~K--rk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
.+-||-|.|.. +..++.+...|..+.+.|+.|+..+..+.+.++..+.+|.
T Consensus 37 gyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L~ 89 (90)
T 2wt7_B 37 GYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKLA 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566666643 3456778889999999999999999999999999888774
No 104
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=69.94 E-value=11 Score=27.51 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=30.4
Q ss_pred CCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhh
Q 022702 78 GEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWF 125 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWF 125 (293)
++++++|+.++...+-..+... . -..++|+.+|++...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 3455679998865554555432 2 24578999999999999996
No 105
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.86 E-value=7 Score=27.40 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 133 KTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEI 169 (293)
Q Consensus 133 Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~ 169 (293)
+...++.....|..++..|..+...|..++..|...+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666655443
No 106
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.68 E-value=20 Score=26.83 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhc
Q 022702 133 KTKQLEKDYDLLKRQYEAVKADREALQAQNQK-------LHAEIMALKSR 175 (293)
Q Consensus 133 Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~-------l~~e~~~lk~~ 175 (293)
|.++.-..+..|+-+++.||.+|..|..+++. |..++..|+..
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44455556677777777777777777777777 55555555544
No 107
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.23 E-value=10 Score=29.57 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 139 KDYDLLKRQYEAVKADREALQAQNQKLHAEIMA 171 (293)
Q Consensus 139 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~ 171 (293)
+++..|+.+++.|..|++.|+.+++.|..++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999999988865
No 108
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=68.04 E-value=8.9 Score=26.46 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 149 EAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 149 ~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
+.|......|..+|..|..++..|+
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555554444
No 109
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=66.85 E-value=21 Score=29.11 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022702 133 KTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 133 Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 174 (293)
.....+++...||.+...++.+.+.+..+++.|+.++..|..
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666655555555555555555555555543
No 110
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=65.20 E-value=26 Score=25.20 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=31.4
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022702 118 PRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 118 ~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 174 (293)
...+..||+.+=. .+......-.......+.|...++...+.|+.|+..+|+
T Consensus 26 r~EaE~~y~~k~e-----el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 26 LQEAEEWYKSKFA-----DLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456679976432 222222222334555677777788888888888887763
No 111
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=64.95 E-value=9.5 Score=23.46 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQN 127 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQN 127 (293)
.++.++...+...+... + + ..++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~-s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V-S---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHhh
Confidence 57777765555555433 2 2 458899999999999999753
No 112
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=64.04 E-value=34 Score=24.07 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 145 KRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 145 k~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
+.....|..+...|..+|..|..++..|+...
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888889999999999998887654
No 113
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=61.04 E-value=22 Score=30.98 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 81 KRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQA 160 (293)
Q Consensus 81 r~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~ 160 (293)
+|.|+.+++..|.. ....+.+|++-.+|+..+.++ ....+. .|..+.+.+.++...|+.
T Consensus 42 ~R~y~~~~~~~l~~-------------i~~l~~~g~~l~~i~~~~~~~-~~~~~~-------~l~~~~~~l~~~i~~l~~ 100 (278)
T 1r8e_A 42 YRYYTDSQLIHLDL-------------IKSLKYIGTPLEEMKKAQDLE-MEELFA-------FYTEQERQIREKLDFLSA 100 (278)
T ss_dssp CEEEETGGGGHHHH-------------HHHHHHTTCCHHHHHHHTTSC-HHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHHhC-hHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 55688888887733 233578899999999998876 332233 334444444444444444
Q ss_pred HHHHHHHH
Q 022702 161 QNQKLHAE 168 (293)
Q Consensus 161 e~~~l~~e 168 (293)
..+.|...
T Consensus 101 ~~~~l~~~ 108 (278)
T 1r8e_A 101 LEQTISLV 108 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 114
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=60.89 E-value=39 Score=27.35 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=48.6
Q ss_pred CCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQ 159 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~ 159 (293)
.+|.|+.+++..|... ...+.+|++-..|+..+..... ........|..+.+.+.++...++
T Consensus 39 g~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~~I~~~l~~~~~-----~~~~~~~~L~~q~~~L~~~i~~l~ 100 (146)
T 3hh0_A 39 GHRLYTKDDLYVLQQI-------------QSFKHLGFSLGEIQNIILQRDI-----ETEVFLRQMHFQREVLLAEQERIA 100 (146)
T ss_dssp SCEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHTSSEE-----EHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHccCC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667999999988432 2346778888888888865421 122233445556666666666666
Q ss_pred HHHHHHHHHHHHhhhc
Q 022702 160 AQNQKLHAEIMALKSR 175 (293)
Q Consensus 160 ~e~~~l~~e~~~lk~~ 175 (293)
...+.|..-+..++..
T Consensus 101 ~~l~~l~~~i~~~~~~ 116 (146)
T 3hh0_A 101 KVLSHMDEMTKKFQKE 116 (146)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 6666666655555443
No 115
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=60.82 E-value=12 Score=33.85 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 022702 134 TKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREVTESI 181 (293)
Q Consensus 134 rk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~~~~~~ 181 (293)
.++++.++..|..+++.|+++...++.|..+|+.|+.+|+........
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGt 103 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGV 103 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 344566678888899999999999999999999999999988765543
No 116
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=60.75 E-value=3.5 Score=26.12 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhH
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRR 129 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRR 129 (293)
.++.++...+...+... . ...+||+.+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 45666655555555443 2 245789999999999999986543
No 117
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=60.71 E-value=16 Score=26.66 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 84 LNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 84 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
++..+..+|.-.|.... .-.++|..||++...|+.+...-|.|.|
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 78888888877653332 2458999999999999988764444433
No 118
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=59.95 E-value=19 Score=21.87 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 150 AVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 150 ~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
+++.|...|+.+...|+-|+.+||
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555554
No 119
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=59.76 E-value=27 Score=25.81 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 132 WKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHA 167 (293)
Q Consensus 132 ~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~ 167 (293)
.|-..++.....|..++..|+.+...|..++..|..
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666655553
No 120
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=59.54 E-value=25 Score=27.10 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
.++..+..+|.-.|.... .-.++|..+|++...|+.+...-|.+.|+
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 367777777776653332 23588999999999999998755555443
No 121
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=58.76 E-value=32 Score=26.62 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
.++..+..++.-.|.... .-.++|..+|++...|+.|...-|.+.|+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888877654432 23589999999999999998765555443
No 122
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=58.41 E-value=25 Score=27.37 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022702 148 YEAVKADREALQAQNQKLHAEI 169 (293)
Q Consensus 148 ~~~l~~e~~~l~~e~~~l~~e~ 169 (293)
+..|.++.+.|..+|+.|..|.
T Consensus 67 v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 123
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=57.88 E-value=22 Score=26.95 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 82 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 82 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
..++..+..+|.-.++-.. -.++|..||+++..|+.+..+-+.|..
T Consensus 33 ~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4589999999987653222 268999999999999998875554443
No 124
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.85 E-value=22 Score=25.85 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=35.9
Q ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 125 FQNRRARWK-TKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 125 FQNRRaK~K-rk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
.|||-|.-. +...+..+..|..+...+..++..+..+|+.|+.++..|...
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466533221 223344566778888889999999999999999998887654
No 125
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=55.85 E-value=24 Score=22.19 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022702 149 EAVKADREALQAQNQKLHAEIM 170 (293)
Q Consensus 149 ~~l~~e~~~l~~e~~~l~~e~~ 170 (293)
.+...+.+.|+.+|..|..++.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHH
Confidence 3344444444444555554443
No 126
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.80 E-value=33 Score=27.90 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022702 139 KDYDLLKRQYEAVKADREALQAQNQKLHAEIMAL 172 (293)
Q Consensus 139 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~l 172 (293)
.+.+.+..+...++.+...++.+.+.+..++..+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444333
No 127
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=54.05 E-value=28 Score=25.43 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022702 141 YDLLKRQYEAVKADREALQAQNQKLHAEIMAL 172 (293)
Q Consensus 141 ~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~l 172 (293)
+..|..+...+..+.+.|+.++..|.+++.+|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666676666666554
No 128
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=53.62 E-value=33 Score=23.46 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhc
Q 022702 141 YDLLKRQYEAVKADREALQA-------QNQKLHAEIMALKSR 175 (293)
Q Consensus 141 ~~~lk~~~~~l~~e~~~l~~-------e~~~l~~e~~~lk~~ 175 (293)
|+.|-++.+.|+.||-.|+. +..+|..|-..+|+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 44455555555555555554 444555555555543
No 129
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=53.38 E-value=63 Score=23.96 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 127 NRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAE 168 (293)
Q Consensus 127 NRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e 168 (293)
.||.|.+-.+...+++.|++.-+.|+.-...|+.=..+|+.|
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E 54 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQE 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 466777766666676666666655554444444333333333
No 130
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=53.06 E-value=19 Score=25.93 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 82 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 82 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
..++..+..+|.-.+.- ..-.++|..+|++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 35899999999884321 234589999999999999888755555444
No 131
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.95 E-value=39 Score=25.25 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 141 YDLLKRQYEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 141 ~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
+..|..+...+..+.+.|+.+++.|..++..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666777777778888888888887765
No 132
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=51.84 E-value=15 Score=27.33 Aligned_cols=46 Identities=17% Similarity=0.035 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
.++..+..+|.-.+.-.. -.++|..||++...|+.+..+-|.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 589999999988643322 3689999999999999888765555544
No 133
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.72 E-value=27 Score=27.80 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKLHAEIM 170 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~ 170 (293)
+...+++.+..|..+.+.++..+..|...+.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444555554444444444444433
No 134
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=48.60 E-value=24 Score=24.01 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 82 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 82 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
..++..+..+|...+ ..+ .-.++|..+|++...|+.+...-+.|.+.
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 458999999998843 222 23579999999999999888755554443
No 135
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=48.59 E-value=15 Score=24.81 Aligned_cols=46 Identities=17% Similarity=0.071 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
.++..+..+|...|.... .-.++|..+|++...|+.+...-|.+.|
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478888888887764331 2458999999999999988764444433
No 136
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=48.04 E-value=50 Score=22.50 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 138 EKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 138 ~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
+..+..|+.++..+-+.|..|..-....+.++..|++..
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788888888888888888888888888887754
No 137
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.00 E-value=59 Score=25.22 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 022702 158 LQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 158 l~~e~~~l~~e~~~lk~~~ 176 (293)
.+.+.++|++|+.+|+...
T Consensus 73 ~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5567777888888887764
No 138
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=47.78 E-value=47 Score=21.69 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 022702 153 ADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 153 ~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
+|...|..+.+.|.+.+.++|..
T Consensus 20 eelaaleselqalekklaalksk 42 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666654
No 139
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=47.46 E-value=1e+02 Score=24.29 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQ 159 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~ 159 (293)
.+|.|+.+++..|.. ....+.+|++...|+.++...+... .....-...|..+.+.+.++...|+
T Consensus 35 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sl~eI~~~l~~~~~~~--~~~~~~~~~l~~~~~~l~~~i~~L~ 99 (135)
T 1q06_A 35 GYRTYTQQHLNELTL-------------LRQARQVGFNLEESGELVNLFNDPQ--RHSADVKRRTLEKVAEIERHIEELQ 99 (135)
T ss_dssp SCEECCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHHhhhcCC--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999998853 2234788999999998886433210 0111223445555555555555555
Q ss_pred HHHHHHHH
Q 022702 160 AQNQKLHA 167 (293)
Q Consensus 160 ~e~~~l~~ 167 (293)
...+.|..
T Consensus 100 ~~~~~L~~ 107 (135)
T 1q06_A 100 SMRDQLLA 107 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 140
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.41 E-value=48 Score=26.52 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=27.1
Q ss_pred CCcchhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022702 116 LQPRQVAIWFQNRRARWKTKQLE-------KDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 116 L~~~qVkvWFQNRRaK~Krk~~~-------~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 174 (293)
|.....+.|=+|+=...-+..++ +.++.|+.++..|+........+.+.|+++...+..
T Consensus 41 l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 44455666777763332222222 223444444444444444444444444444444433
No 141
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=45.18 E-value=32 Score=27.46 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=36.3
Q ss_pred CCCCCCCCHHHHHHHHHhH-hhCCCCCHHHHHHHHH----Hh--CCCcchhhhhhhhh
Q 022702 78 GEKKRRLNMEQVKTLEKNF-ELGNKLEPERKMQLAR----AL--GLQPRQVAIWFQNR 128 (293)
Q Consensus 78 krkr~rft~~Ql~~LE~~F-~~~~~p~~~~r~~LA~----~l--gL~~~qVkvWFQNR 128 (293)
+++|+++|.+|...|-..+ +.+...... +||+ .+ ++....|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678889999999998888 666665544 4555 77 77888898888653
No 142
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=44.77 E-value=49 Score=24.27 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 142 DLLKRQYEAVKADREALQAQNQKLHAEI 169 (293)
Q Consensus 142 ~~lk~~~~~l~~e~~~l~~e~~~l~~e~ 169 (293)
..|+.+...+..+.+.|+.+++.|++++
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555444
No 143
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=44.66 E-value=63 Score=24.40 Aligned_cols=66 Identities=24% Similarity=0.284 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQ 159 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~ 159 (293)
.++.|+.+++..|... ...+.+|++...|+.++..... .....|..+.+.+.++...|+
T Consensus 36 g~R~Y~~~dl~~l~~I-------------~~lr~~G~sl~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~ 94 (108)
T 2vz4_A 36 GHRRYSDADLDRLQQI-------------LFYRELGFPLDEVAALLDDPAA--------DPRAHLRRQHELLSARIGKLQ 94 (108)
T ss_dssp CCEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHTC-------------CCHHHHHHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhCCcH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999988432 2246789999999988865321 112334444455555554444
Q ss_pred HHHHHHH
Q 022702 160 AQNQKLH 166 (293)
Q Consensus 160 ~e~~~l~ 166 (293)
...+.|.
T Consensus 95 ~~~~~l~ 101 (108)
T 2vz4_A 95 KMAAAVE 101 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 144
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.30 E-value=28 Score=20.43 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022702 153 ADREALQAQNQKLHAEIMAL 172 (293)
Q Consensus 153 ~e~~~l~~e~~~l~~e~~~l 172 (293)
..|..|+++...|.-|+.+|
T Consensus 7 qknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHh
Confidence 33344444444444444443
No 145
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=44.18 E-value=70 Score=24.83 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 128 RRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHA 167 (293)
Q Consensus 128 RRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~ 167 (293)
+|-+...+........|..+.+.|++||..|..+++.-.+
T Consensus 54 ~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 54 NRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333333445556666667777777777766665443
No 146
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=44.01 E-value=28 Score=26.88 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHH
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRAR 131 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK 131 (293)
.++..+..+|. .|-. ...-.++|..||++...|+.+...-|.|
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46677777776 3322 2234689999999999999887543333
No 147
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.95 E-value=17 Score=25.29 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 84 LNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 84 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
++..+..+|.-.+. .+ .-.++|..+|++...|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 78888888877432 22 23489999999999999888755555544
No 148
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=43.70 E-value=75 Score=21.65 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 129 RARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEI 169 (293)
Q Consensus 129 RaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~ 169 (293)
|.+.|++. ..+.|..+...|..+|..|..++..|+.++
T Consensus 15 rSR~RKk~---~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 15 ESRRKKKE---YVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45544443 455677788889999999999999888764
No 149
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.55 E-value=55 Score=19.81 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 142 DLLKRQYEAVKADREALQAQNQKLH 166 (293)
Q Consensus 142 ~~lk~~~~~l~~e~~~l~~e~~~l~ 166 (293)
..||+++.+++.|...|+-+...|+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444443
No 150
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.36 E-value=86 Score=22.89 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 146 RQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 146 ~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
..++.+..+-+....+.+.|+.++..+++.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555555555666667777777776654
No 151
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=41.88 E-value=81 Score=21.54 Aligned_cols=10 Identities=40% Similarity=0.610 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 022702 157 ALQAQNQKLH 166 (293)
Q Consensus 157 ~l~~e~~~l~ 166 (293)
.|+.||..|+
T Consensus 14 ~Lk~ENshLr 23 (54)
T 1deb_A 14 ALKMENSNLR 23 (54)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhHHH
Confidence 3333333333
No 152
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=41.73 E-value=64 Score=23.60 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=40.0
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 107 KMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 107 r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
....++.+|++-..|+..+..+..... .........|..+.+.+.++...|+.....|..-+....
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~~~~~~~-~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSIRIDPEH-HTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCGGG-CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345688999999999999875431100 012233455666666666666666665555555554443
No 153
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=41.41 E-value=40 Score=19.58 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 022702 151 VKADREALQAQNQKLHAEIMAL 172 (293)
Q Consensus 151 l~~e~~~l~~e~~~l~~e~~~l 172 (293)
++.|...|+.+...|+.|+..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 3444444555555555555444
No 154
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=41.01 E-value=97 Score=27.22 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQ 159 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~ 159 (293)
..|.|+.+++..|.. ....+.+|++-..|+..+..... .....|..+.+.|.++...|+
T Consensus 38 GyR~Y~~~dl~~L~~-------------I~~lr~~G~sL~eIk~~l~~~~~--------~~~~~L~~~~~~L~~~~~~L~ 96 (249)
T 3qao_A 38 GYRIYSEKDVDKLQQ-------------ILFFKELDFPLKKIQQILDDPLF--------DKNVALDMQRHLLIEKKQRIE 96 (249)
T ss_dssp CCEEBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHHCTTC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHhccCch--------HHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999843 23457888888888887754321 123445666666777777777
Q ss_pred HHHHHHHHHHHHhhhcc
Q 022702 160 AQNQKLHAEIMALKSRE 176 (293)
Q Consensus 160 ~e~~~l~~e~~~lk~~~ 176 (293)
.....|...+..++...
T Consensus 97 ~~~~~l~~~i~~~~~~~ 113 (249)
T 3qao_A 97 TMLATLDLTIKNEKGEI 113 (249)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 76677776666665543
No 155
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=40.83 E-value=1e+02 Score=23.14 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQ 159 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~ 159 (293)
.++.|+.+++..|... ...+.+|++...|+..+..... .....|..+.+.+.++...|+
T Consensus 37 g~R~Y~~~dl~~l~~I-------------~~l~~~G~~l~~I~~~l~~~~~--------~~~~~l~~~~~~l~~~i~~l~ 95 (109)
T 1r8d_A 37 GYRLYSDADLERLQQI-------------LFFKEIGFRLDEIKEMLDHPNF--------DRKAALQSQKEILMKKKQRMD 95 (109)
T ss_dssp CCEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHCTTS--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999988542 2246778888888877765321 112334444555555544444
Q ss_pred HHHHHHH
Q 022702 160 AQNQKLH 166 (293)
Q Consensus 160 ~e~~~l~ 166 (293)
...+.|.
T Consensus 96 ~~~~~l~ 102 (109)
T 1r8d_A 96 EMIQTID 102 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 156
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=40.01 E-value=47 Score=20.88 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022702 133 KTKQLEKDYDLLKRQYEAVKAD 154 (293)
Q Consensus 133 Krk~~~~~~~~lk~~~~~l~~e 154 (293)
|......+.+.||+++..|..+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHH
Confidence 4444444555555444444443
No 157
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.84 E-value=93 Score=24.84 Aligned_cols=41 Identities=29% Similarity=0.389 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 133 KTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 133 Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
+-+.++.++..|++++....++.+.|+.+++.+...+...+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence 45667788888888888888888888888888877765443
No 158
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=39.79 E-value=47 Score=26.09 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 142 DLLKRQYEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 142 ~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
+.+.++++...+++..|+...+.|+.|+.+.+
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777777888888888888887654
No 159
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.67 E-value=48 Score=31.76 Aligned_cols=49 Identities=29% Similarity=0.464 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 127 NRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 127 NRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
|.+-..|-++++++++.|..+.+.++.+...++.+...++.|+.+++..
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~ 92 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSV 92 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444455667788888888888999999999999999999999888765
No 160
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=38.66 E-value=24 Score=25.63 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 82 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 82 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
..++..+..+|.-.+.-.. -.++|..||++...|+.+..+-|.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGYS------NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHTTCC------TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3589999999987543221 2478999999999999988765555544
No 161
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=38.59 E-value=54 Score=25.85 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=33.0
Q ss_pred CCCCCCCHHHHHHHHHhHhh-----CCCCCHHHHHHHHHHhCCCcch
Q 022702 79 EKKRRLNMEQVKTLEKNFEL-----GNKLEPERKMQLARALGLQPRQ 120 (293)
Q Consensus 79 rkr~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~lgL~~~q 120 (293)
.+|..+|.+|+..|...|.. .-+.+..+-..+.+.||+.+..
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 45667999999999999975 4488888888888888877653
No 162
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=38.37 E-value=2.2 Score=33.78 Aligned_cols=61 Identities=23% Similarity=0.310 Sum_probs=29.4
Q ss_pred CCCcchhhhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 115 GLQPRQVAIWFQNRRARWK-------TKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 115 gL~~~qVkvWFQNRRaK~K-------rk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
||+..+|.-.=|-||.-.- |++...+...|..+...|..+.+.|..|+..|..|+.++|..
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k 94 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSC
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777666555444332111 111122333444444444555555555666666666555544
No 163
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=37.48 E-value=37 Score=25.24 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHhH-hhC-CCCCH-HHHHHHHHHhCCCcchhhhhh
Q 022702 81 KRRLNMEQVKTLEKNF-ELG-NKLEP-ERKMQLARALGLQPRQVAIWF 125 (293)
Q Consensus 81 r~rft~~Ql~~LE~~F-~~~-~~p~~-~~r~~LA~~lgL~~~qVkvWF 125 (293)
+++|+.++....-..+ ... .+.+. ....++|..+|+++..|..|.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHH
Confidence 4578988765444433 321 12222 345689999999999999995
No 164
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=37.41 E-value=64 Score=23.63 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 145 KRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 145 k~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
...+..|..+...+..+++.|+.+...|+..
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666544
No 165
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=37.28 E-value=19 Score=26.39 Aligned_cols=35 Identities=34% Similarity=0.590 Sum_probs=24.0
Q ss_pred HHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHHHH
Q 022702 89 VKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQL 137 (293)
Q Consensus 89 l~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk~~ 137 (293)
+..+.-.|+.++||.+.--.+ |. .|||-+|+.++.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHH
Confidence 455666799999998652211 11 599999998764
No 166
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.77 E-value=78 Score=27.12 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022702 137 LEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMAL 172 (293)
Q Consensus 137 ~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~l 172 (293)
..+-++.+-..+..|++++..|+++|++|+.|....
T Consensus 143 i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 143 IRELICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666677777777777777777777776544
No 167
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.04 E-value=83 Score=19.96 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 141 YDLLKRQYEAVKADREALQAQNQK 164 (293)
Q Consensus 141 ~~~lk~~~~~l~~e~~~l~~e~~~ 164 (293)
+++|-..++.-..+..+|+.+|..
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333444444444444444444433
No 168
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.66 E-value=53 Score=20.48 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 022702 154 DREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 154 e~~~l~~e~~~l~~e~~~lk~ 174 (293)
..+.|..+|..|..|+.+||+
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 334455555555556555554
No 169
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.87 E-value=64 Score=22.14 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHhHhhC--CCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 83 RLNMEQVKTLEKNFELG--NKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~--~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
.++..+..+|...|... .-.+ -.++|..+|++...|+.+...-+.|.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s---~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT---LEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47889999999888521 1122 348999999999999988754444443
No 170
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.37 E-value=1.4e+02 Score=24.71 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 022702 141 YDLLKRQYEAVKADREALQAQNQKLHAEIMALKSREV 177 (293)
Q Consensus 141 ~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~~ 177 (293)
+..|+-++..+......|+.||+.|-...+..+..+.
T Consensus 105 l~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEA 141 (152)
T 3a7p_A 105 LISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKET 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444455555555555555554443
No 171
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.94 E-value=96 Score=23.02 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022702 133 KTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 133 Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 174 (293)
+|...+.+...|++..+.+--..-.|..+.+.|+.|+.-||.
T Consensus 43 ~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 43 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677778888888888777778888889999999887775
No 172
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.88 E-value=68 Score=23.28 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 145 KRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 145 k~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
-..+..|..++..|+.+.+.|..++..|+...
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666665443
No 173
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.78 E-value=1e+02 Score=20.36 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 022702 156 EALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 156 ~~l~~e~~~l~~e~~~lk~ 174 (293)
+.|..-...|+.|+.+|..
T Consensus 27 qnlekiianlrdeiarlen 45 (52)
T 3he5_B 27 QNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3344444445555555543
No 174
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.61 E-value=27 Score=20.44 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 150 AVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 150 ~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
++.-||+.|.+....|+..+..||
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555444443
No 175
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.61 E-value=33 Score=28.43 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
.++..+..+|.-.|... ..-.++|..||++...|+.+...-|.|.|
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 36777777777766332 22458999999999999988764444433
No 176
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.45 E-value=96 Score=23.03 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 135 KQLEKDYDLLKRQYEAVKADREALQAQNQKL 165 (293)
Q Consensus 135 k~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l 165 (293)
+.++.....+..+.+.++.++..|+.+.+.|
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444433
No 177
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=31.95 E-value=1.3e+02 Score=23.45 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 133 KTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 133 Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
+|...+.+...|++..+..--....|+.+.+.|+.|+.-+|...
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777888888887777777778888888999888877654
No 178
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=31.93 E-value=1.7e+02 Score=23.64 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 022702 126 QNRRARWKTKQLEKDYDLL 144 (293)
Q Consensus 126 QNRRaK~Krk~~~~~~~~l 144 (293)
+|.+.+.+...+..++..+
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l 41 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENA 41 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4555555544444444433
No 179
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.88 E-value=1.5e+02 Score=22.77 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 022702 158 LQAQNQKLHAEI 169 (293)
Q Consensus 158 l~~e~~~l~~e~ 169 (293)
+...|.+|+.++
T Consensus 81 ~e~kn~~L~~qL 92 (97)
T 2eqb_B 81 IEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444454444
No 180
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=31.81 E-value=1.5e+02 Score=23.03 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 022702 129 RARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSR 175 (293)
Q Consensus 129 RaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~ 175 (293)
=-|.+-...++.+..+++++.....+.+.++.....|+.++..++..
T Consensus 34 lLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 34 TLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666666666555544
No 181
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.58 E-value=1.1e+02 Score=29.51 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022702 144 LKRQYEAVKADREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 144 lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 174 (293)
++++++..++....++++++.+.+++..+..
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444455444444433
No 182
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=31.56 E-value=73 Score=27.30 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 138 EKDYDLLKRQYEAVKADREALQAQNQKLHAEIM 170 (293)
Q Consensus 138 ~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~ 170 (293)
-..+..|+.++..+..+|++|+.|-++.+++++
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666667777777777776666666553
No 183
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=31.53 E-value=39 Score=23.00 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 022702 83 RLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQN 127 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQN 127 (293)
.++..+..+|...|....+- ...-.++|..+|++...|+.+...
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~r 48 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 37888888888887321111 112357899999999999988653
No 184
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.53 E-value=76 Score=21.70 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 148 YEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 148 ~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
.+.+..+.+.+..++..|+.++.+++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444
No 185
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.47 E-value=44 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 141 YDLLKRQYEAVKADREALQAQNQKLHAE 168 (293)
Q Consensus 141 ~~~lk~~~~~l~~e~~~l~~e~~~l~~e 168 (293)
++.+...++.+..++..|+.++..|..+
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566677778888888888888777654
No 186
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.45 E-value=64 Score=23.15 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHhHhhC--CCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 83 RLNMEQVKTLEKNFELG--NKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~~--~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
.++..+..+|...|... .-.+ -.++|..+|++...|+.+...-+.|.|
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s---~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKT---LEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 37888999998887521 1122 347899999999999998754444433
No 187
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=30.97 E-value=1.7e+02 Score=21.93 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 139 KDYDLLKRQYEAVKADREALQAQNQKLHA 167 (293)
Q Consensus 139 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~ 167 (293)
+++..|...++.++.++..++.+++.|+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666667777666666666554
No 188
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=30.38 E-value=75 Score=23.29 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHH
Q 022702 81 KRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRAR 131 (293)
Q Consensus 81 r~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK 131 (293)
...||..+..+|.-.++-. ...++|..||++++.|+....+=+.|
T Consensus 27 ~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3469999999998776222 24689999999999999776544333
No 189
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.19 E-value=56 Score=24.79 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 022702 82 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQN 127 (293)
Q Consensus 82 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQN 127 (293)
..++.++...+...+.... ...++|+.+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G~-----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHc
Confidence 4688888777777775432 2457899999999999999864
No 190
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=29.82 E-value=7 Score=23.79 Aligned_cols=7 Identities=57% Similarity=2.110 Sum_probs=5.8
Q ss_pred CCCccCC
Q 022702 281 SGFWPWL 287 (293)
Q Consensus 281 ~~~~~~~ 287 (293)
+.||||+
T Consensus 6 p~yw~wl 12 (32)
T 2l5b_A 6 PTYWPWL 12 (32)
T ss_dssp CCCHHHH
T ss_pred ccchHHH
Confidence 4799997
No 191
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=29.79 E-value=92 Score=22.95 Aligned_cols=47 Identities=11% Similarity=0.237 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHhHhhC-----CCCCHHHHHHHHHHhCC--Ccchhhhhhh
Q 022702 80 KKRRLNMEQVKTLEKNFELG-----NKLEPERKMQLARALGL--QPRQVAIWFQ 126 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~-----~~p~~~~r~~LA~~lgL--~~~qVkvWFQ 126 (293)
+...++.+++..|...|..- -+.+..+-..+.+.+|+ +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34468999999999998754 48999988888888874 5566666663
No 192
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=29.77 E-value=86 Score=18.71 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022702 145 KRQYEAVKADREALQAQNQKLHA 167 (293)
Q Consensus 145 k~~~~~l~~e~~~l~~e~~~l~~ 167 (293)
..-...+.+||..|+...+.|.+
T Consensus 5 nallasleaenkqlkakveella 27 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555444
No 193
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.74 E-value=1.1e+02 Score=20.07 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022702 137 LEKDYDLLKRQYEAVKADREALQ 159 (293)
Q Consensus 137 ~~~~~~~lk~~~~~l~~e~~~l~ 159 (293)
++.....|......|..||..|+
T Consensus 15 le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444444555555554444
No 194
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=29.10 E-value=87 Score=18.93 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 141 YDLLKRQYEAVKADREALQAQNQKLH 166 (293)
Q Consensus 141 ~~~lk~~~~~l~~e~~~l~~e~~~l~ 166 (293)
...|+....++++.|-..++..+.|+
T Consensus 3 vqalkkrvqalkarnyaakqkvqalr 28 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALR 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34566677777777777666555554
No 195
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.09 E-value=60 Score=24.18 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 143 LLKRQYEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 143 ~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
.|+.+++.+..++..+..+.+.++..+..+|
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk 34 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLR 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444443
No 196
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.86 E-value=2.1e+02 Score=22.43 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 142 DLLKRQYEAVKADREALQAQNQKLHAEIM 170 (293)
Q Consensus 142 ~~lk~~~~~l~~e~~~l~~e~~~l~~e~~ 170 (293)
..|..++..++..++.++.....|...+.
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34444444455544444444444443333
No 197
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.58 E-value=1.2e+02 Score=29.20 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 022702 161 QNQKLHAEIM 170 (293)
Q Consensus 161 e~~~l~~e~~ 170 (293)
....++.|+.
T Consensus 559 ~~~~l~~e~~ 568 (597)
T 3oja_B 559 KQAELRQETS 568 (597)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 198
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.53 E-value=52 Score=26.36 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHH
Q 022702 84 LNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133 (293)
Q Consensus 84 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~K 133 (293)
++..+..+|.-.|-... .-.++|..+|++...|+.+...-|.|.|
T Consensus 141 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL-----SYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp SCHHHHHHHHHHHTTCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 67777777766553321 2358999999999999988764444433
No 199
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.47 E-value=1.9e+02 Score=24.74 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 022702 137 LEKDYDLLKRQYEAV 151 (293)
Q Consensus 137 ~~~~~~~lk~~~~~l 151 (293)
+..+++.+|.++...
T Consensus 68 L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 68 LKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333443333333
No 200
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.46 E-value=1.4e+02 Score=28.17 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKLHAEIMAL 172 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~l 172 (293)
+.+..++..+....+.+.++.++++++.++..+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 333344444444444444444444444444433
No 201
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=28.10 E-value=1.1e+02 Score=19.15 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 022702 156 EALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 156 ~~l~~e~~~l~~e~~~lk~ 174 (293)
+.|..+++.|++|+.+||+
T Consensus 11 EeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 11 XELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 3344444444455554443
No 202
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=27.84 E-value=43 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKLH 166 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l~ 166 (293)
+.+.||.++..|.+.+..|+.||.-|+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655554443
No 203
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.73 E-value=38 Score=22.19 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=21.9
Q ss_pred HHHHHHhCCCcchhhhhhhhhHHHHHHH
Q 022702 108 MQLARALGLQPRQVAIWFQNRRARWKTK 135 (293)
Q Consensus 108 ~~LA~~lgL~~~qVkvWFQNRRaK~Krk 135 (293)
.++|..+|+++..|+.+..+-+.|.+..
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 4889999999999999887655555443
No 204
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=27.62 E-value=1.3 Score=36.72 Aligned_cols=30 Identities=3% Similarity=-0.077 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCH
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEP 104 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~ 104 (293)
...+|.|+.|+..|++.|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 344677778999999999999999999864
No 205
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=27.38 E-value=1.1e+02 Score=18.91 Aligned_cols=21 Identities=5% Similarity=0.178 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 022702 154 DREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 154 e~~~l~~e~~~l~~e~~~lk~ 174 (293)
..+.|..++..|+.|+.+||+
T Consensus 8 KvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 334455555666666666654
No 206
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=27.35 E-value=43 Score=29.80 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 139 KDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 139 ~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
..++.+-.+++.+.++...++.+++.+++++.+|+...
T Consensus 141 ~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 141 ETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666677777777777777777777766665553
No 207
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=26.98 E-value=2.1e+02 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhh
Q 022702 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNR 128 (293)
Q Consensus 80 kr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNR 128 (293)
.+|.|+.+++..|.. ....+.+|++-.+|+..+...
T Consensus 45 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sl~eI~~~l~~~ 80 (154)
T 2zhg_A 45 NQRRYKRDVLRYVAI-------------IKIAQRIGIPLATIGEAFGVL 80 (154)
T ss_dssp SCEEBCTTHHHHHHH-------------HHHHHHHTCCHHHHHHHHCC-
T ss_pred CCEEeCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHHhc
Confidence 355699999888843 233567899999999888653
No 208
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=26.78 E-value=62 Score=23.18 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHhHhh-----CCCCCHHHHHHHHHHhCCCcchhhhhh
Q 022702 83 RLNMEQVKTLEKNFEL-----GNKLEPERKMQLARALGLQPRQVAIWF 125 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~lgL~~~qVkvWF 125 (293)
.++.+++..++..|.. .-+.+..+-..+...+|++...|+.+|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 3678899999999875 336777777777788888877766554
No 209
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.70 E-value=1.7e+02 Score=20.62 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 147 QYEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 147 ~~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
-+..+..|...++...++|+.|...|+
T Consensus 35 VN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 35 VNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 334444555555555555655555443
No 210
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=26.63 E-value=1.4e+02 Score=20.75 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 174 (293)
....||+.+..|-+....|+.+......|+.+|..
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666544
No 211
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=26.44 E-value=24 Score=23.06 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 022702 107 KMQLARALGLQPRQVAIWFQNRR 129 (293)
Q Consensus 107 r~~LA~~lgL~~~qVkvWFQNRR 129 (293)
..+||+.+|++...|.-|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998764
No 212
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.42 E-value=2.2e+02 Score=22.31 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Q 022702 139 KDYDLLKRQYEAVKADREA-------LQAQNQKLHAEIMAL 172 (293)
Q Consensus 139 ~~~~~lk~~~~~l~~e~~~-------l~~e~~~l~~e~~~l 172 (293)
+....|+.+.+.-+.++.+ +..+++.|+.++..|
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 3456666666555554444 444555555555444
No 213
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=25.95 E-value=1.1e+02 Score=26.25 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 144 LKRQYEAVKADREALQAQNQKLHAEI 169 (293)
Q Consensus 144 lk~~~~~l~~e~~~l~~e~~~l~~e~ 169 (293)
.-.+...++++|..|++||++|..|-
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456677777888888887777653
No 214
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=25.67 E-value=26 Score=23.04 Aligned_cols=24 Identities=13% Similarity=0.412 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHH
Q 022702 107 KMQLARALGLQPRQVAIWFQNRRA 130 (293)
Q Consensus 107 r~~LA~~lgL~~~qVkvWFQNRRa 130 (293)
..+||+.+|++...|.-|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 457999999999999999987553
No 215
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=25.56 E-value=85 Score=26.57 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 81 KRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 81 r~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
...+|..++++|.-.++-. .-.++|..||++++.|+....|-|.|..-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3458888888886643221 23578999999999999988766555443
No 216
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=25.47 E-value=57 Score=20.96 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 022702 86 MEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQ 126 (293)
Q Consensus 86 ~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQ 126 (293)
.++...+...+... + ...++|+.+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 56655555555433 2 245889999999999998874
No 217
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.39 E-value=1.8e+02 Score=27.67 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 128 RRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 128 RRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
+..+.+++++++..+.++.+++.++++......+..+|..++.++++..
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 3455566666666777777777777766666667777888888888875
No 218
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.56 E-value=1.9e+02 Score=27.31 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 130 ARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 130 aK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
.+.+..+++++++.++.+++.+++.....+..-.+|..++.++|+..
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 33445556666666777777777666666666777888888888875
No 219
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=24.38 E-value=30 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 022702 107 KMQLARALGLQPRQVAIWFQNRR 129 (293)
Q Consensus 107 r~~LA~~lgL~~~qVkvWFQNRR 129 (293)
..+||+.+|++...|.-|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998765
No 220
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.32 E-value=91 Score=26.90 Aligned_cols=48 Identities=15% Similarity=0.026 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHHH
Q 022702 82 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTK 135 (293)
Q Consensus 82 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Krk 135 (293)
..++..+..+|.-.++ .+ .-.++|..||+++..|++...+-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~~--G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4699999999888642 22 245789999999999999887666555543
No 221
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=24.20 E-value=2.6e+02 Score=21.91 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 129 RARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 129 RaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
|-..++..++..+..+...++.....+..|.....++..++..|+...
T Consensus 73 ~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556677777777888888888888888888888888777654
No 222
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=24.17 E-value=1.3e+02 Score=18.47 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 149 EAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 149 ~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
.+.++|...+..+.+.++.|+.+.|
T Consensus 5 aaikeeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666665554
No 223
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=23.88 E-value=2.2e+02 Score=22.22 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHH
Q 022702 89 VKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRA 130 (293)
Q Consensus 89 l~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRa 130 (293)
....+..|......+......+|..+||....+.-++.+...
T Consensus 85 ~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~ 126 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEV 126 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHH
Confidence 345567788777788888889999999999888877765443
No 224
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=23.88 E-value=30 Score=23.43 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 022702 107 KMQLARALGLQPRQVAIWFQNRR 129 (293)
Q Consensus 107 r~~LA~~lgL~~~qVkvWFQNRR 129 (293)
..+||+.+|++...|.-|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998765
No 225
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=23.82 E-value=41 Score=19.93 Aligned_cols=12 Identities=50% Similarity=1.077 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHH
Q 022702 126 QNRRARWKTKQL 137 (293)
Q Consensus 126 QNRRaK~Krk~~ 137 (293)
.|||-+|+..+.
T Consensus 7 RnRRRRWR~Rq~ 18 (26)
T 1etf_B 7 RNRRRRWRERQR 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 589999988764
No 226
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.71 E-value=1.5e+02 Score=21.10 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhh
Q 022702 81 KRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVA 122 (293)
Q Consensus 81 r~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVk 122 (293)
+..+|.++...||+.......-...+=..||..+|=+..+|+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~ 49 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVT 49 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHH
Confidence 446999999999999876653333333568888875554544
No 227
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=23.69 E-value=1.1e+02 Score=21.89 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhhcc
Q 022702 158 LQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 158 l~~e~~~l~~e~~~lk~~~ 176 (293)
|....++|..|+..++...
T Consensus 37 L~Rk~DKl~~ele~l~~~l 55 (65)
T 3sja_C 37 NNRKLDSLDKEINNLKDEI 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555554443
No 228
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=23.63 E-value=29 Score=23.11 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHH
Q 022702 107 KMQLARALGLQPRQVAIWFQNRRA 130 (293)
Q Consensus 107 r~~LA~~lgL~~~qVkvWFQNRRa 130 (293)
..+||+.+|++...|.-|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 357999999999999999987664
No 229
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.40 E-value=1e+02 Score=27.72 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 138 EKDYDLLKRQYEAVKADREALQAQNQKLHA 167 (293)
Q Consensus 138 ~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~ 167 (293)
...+++|+.....++.|...|+.|+++|+.
T Consensus 67 ~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 67 AARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334455555555566666666666655543
No 230
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.38 E-value=2.2e+02 Score=21.31 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKL 165 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l 165 (293)
++..|...++.++.+...|+.+|+.|
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L 64 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDL 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544443
No 231
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=23.29 E-value=50 Score=23.38 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHhHhh-----CCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 022702 83 RLNMEQVKTLEKNFEL-----GNKLEPERKMQLARALGLQPRQVAIWFQ 126 (293)
Q Consensus 83 rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~lgL~~~qVkvWFQ 126 (293)
.++.+++..|...|.. ..+++..+-..+...+|++..+|+.+|.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4888999999999864 3478888888888888988777776664
No 232
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.17 E-value=1.4e+02 Score=18.57 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 022702 154 DREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 154 e~~~l~~e~~~l~~e~~~lk~ 174 (293)
..+.|..++..|+.|+.+||+
T Consensus 9 KVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 9 KLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHH
Confidence 334455555556666665554
No 233
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.85 E-value=1.8e+02 Score=19.57 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022702 140 DYDLLKRQYEAVKADREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 140 ~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 174 (293)
....||.-+..|-.....|+.....+..|+.+|+.
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34455566666655555666555666666655543
No 234
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.65 E-value=2.7e+02 Score=23.81 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 022702 144 LKRQYEAVKADREALQ 159 (293)
Q Consensus 144 lk~~~~~l~~e~~~l~ 159 (293)
|..++..++..++.++
T Consensus 93 Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 235
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.42 E-value=3e+02 Score=26.84 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhCCCcchhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 104 PERKMQLARALGLQPRQVAIWFQ---NRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 104 ~~~r~~LA~~lgL~~~qVkvWFQ---NRRaK~Krk~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
...+..|...++|++.|.+-=.. .|-++..+.+++++++.|..+++.++.-........+-+..|+.+++...
T Consensus 385 ~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y 460 (470)
T 3ilw_A 385 DIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRH 460 (470)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 44566778888998888654332 24466677777788888887777777666665556677777887777654
No 236
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=22.32 E-value=1.2e+02 Score=18.90 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 022702 153 ADREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 153 ~e~~~l~~e~~~l~~e~~~lk~ 174 (293)
...+.|..++..|..|+.+||+
T Consensus 8 dKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 8 DKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3344555566666666666654
No 237
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.95 E-value=2.5e+02 Score=20.94 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022702 146 RQYEAVKADREALQAQNQKLHAEIMALKS 174 (293)
Q Consensus 146 ~~~~~l~~e~~~l~~e~~~l~~e~~~lk~ 174 (293)
.+++.|....+.++.++..|+.++..|+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666655543
No 238
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.86 E-value=1.5e+02 Score=21.92 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 022702 143 LLKRQYEAVKADREALQAQNQKLHAEIMALKSRE 176 (293)
Q Consensus 143 ~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk~~~ 176 (293)
.|..+++.++.|...|+-+++.+.-++..++.+.
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3556666677777777777777777766666543
No 239
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=21.82 E-value=34 Score=23.07 Aligned_cols=24 Identities=13% Similarity=0.412 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHH
Q 022702 107 KMQLARALGLQPRQVAIWFQNRRA 130 (293)
Q Consensus 107 r~~LA~~lgL~~~qVkvWFQNRRa 130 (293)
..+||+.+|++...|.-|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 357999999999999999987553
No 240
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=21.53 E-value=16 Score=30.29 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=29.5
Q ss_pred HHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHH
Q 022702 89 VKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRA 130 (293)
Q Consensus 89 l~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRa 130 (293)
+......|....|-... -.+||++.|++..-|-.+|.||-.
T Consensus 49 l~aA~~l~~~~G~~~~t-v~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 49 LDACADLLDEVGYDALS-TRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcChhhcc-HHHHHHHHCCCchhHHHHcCCHHH
Confidence 44444557666654333 457899999999999999998544
No 241
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=21.51 E-value=2.9e+02 Score=23.21 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhhh
Q 022702 162 NQKLHAEIMALKS 174 (293)
Q Consensus 162 ~~~l~~e~~~lk~ 174 (293)
+..|..|+.+++.
T Consensus 99 i~~L~~El~~~k~ 111 (168)
T 3o0z_A 99 ITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 242
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=21.08 E-value=36 Score=23.05 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 022702 107 KMQLARALGLQPRQVAIWFQNRR 129 (293)
Q Consensus 107 r~~LA~~lgL~~~qVkvWFQNRR 129 (293)
..+||+.+|++...|.-|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35799999999999999998764
No 243
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.07 E-value=3.6e+02 Score=22.52 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHhHhh
Q 022702 82 RRLNMEQVKTLEKNFEL 98 (293)
Q Consensus 82 ~rft~~Ql~~LE~~F~~ 98 (293)
.-+|.+|...+.+.++.
T Consensus 66 LnLT~EQq~ql~~I~~e 82 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDD 82 (175)
T ss_dssp --CCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 45899998888777654
No 244
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.03 E-value=1.7e+02 Score=18.52 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022702 146 RQYEAVKADREALQAQNQKLHA 167 (293)
Q Consensus 146 ~~~~~l~~e~~~l~~e~~~l~~ 167 (293)
...+.|..++..|+.++.+|+.
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444444444444443
No 245
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.93 E-value=1.2e+02 Score=25.52 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHHHHHH
Q 022702 81 KRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT 134 (293)
Q Consensus 81 r~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQNRRaK~Kr 134 (293)
...+|..++++|.-.++ . ..-.++|..||++++.|+....|-|.|..-
T Consensus 171 ~~~Lt~~e~~vl~~~~~-g-----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV-G-----KTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCCCHHHHHHHHHHTT-T-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 34589999888866431 1 124588999999999999888765555443
No 246
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.63 E-value=1.3e+02 Score=23.70 Aligned_cols=47 Identities=17% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhHhhCCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 022702 75 SQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQ 126 (293)
Q Consensus 75 ~~~krkr~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~lgL~~~qVkvWFQ 126 (293)
+......+.++.++...+-..+.... ...++|+.+|++...|..|++
T Consensus 17 g~~~~~~~~~s~e~r~~ii~l~~~G~-----s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 17 GGAFVNGRPLPEVVRQRIVDLAHQGV-----RPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp CCTTSSSCSSCHHHHHHHHHHHHHTC-----CHHHHHHHHTCCSHHHHHHHC
T ss_pred CCcCCCCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 247
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.44 E-value=1.9e+02 Score=18.88 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022702 136 QLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIMALK 173 (293)
Q Consensus 136 ~~~~~~~~lk~~~~~l~~e~~~l~~e~~~l~~e~~~lk 173 (293)
+++.+...|..+++.++..|-.-+.-..-|.+|+..|+
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444433444555554443
Done!