BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022703
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6IP50|UBX1A_XENLA UBX domain-containing protein 1-A OS=Xenopus laevis GN=ubxn1-a PE=2
SV=1
Length = 296
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 106/204 (51%), Gaps = 36/204 (17%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSS 177
L+ L MGF RA +AL +GN +E A++W+VEHE+DPDIDE P V V G +
Sbjct: 7 LESLIEMGFSSTRAEKALTATGNQGIEPAMDWLVEHEDDPDIDE-PSVVVPEGSSTDTAD 65
Query: 178 LTPEEIKLKAQELRERARK------KKEEEEKRM------------------EREREKER 213
T Q + A + +KE++ KRM E+EK+R
Sbjct: 66 TTDTTDTTDTQGMDTSAERLPLTEEEKEKQTKRMMELVAQKQNEREEREKKERIEQEKQR 125
Query: 214 IRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLG---- 269
+ G+EL K+ +E E ++ R+ EK+EEK ARE++R+K+ DKA+R RR G
Sbjct: 126 RKHGQELSAIKQKMQEQEMQKAAEDRRREKQEEKMARERVREKIARDKADRARRFGGASS 185
Query: 270 ---LPPED---PATTKS-SAPVVE 286
PP + PATT S S+PV E
Sbjct: 186 EPISPPAETSIPATTPSPSSPVQE 209
>sp|Q6GL77|UBXN1_XENTR UBX domain-containing protein 1 OS=Xenopus tropicalis GN=ubxn1 PE=2
SV=1
Length = 287
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 110/208 (52%), Gaps = 39/208 (18%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV---SGGGGAS 174
L+ L MGF +RA +AL +GN +E A++W+VEHE+DPDIDE P V V S G
Sbjct: 7 LESLIEMGFSPSRAEKALAATGNQGIEPAMDWLVEHEDDPDIDE-PSVVVPEDSDSGTTD 65
Query: 175 KSSLTPEEIKLKAQELRERARKKKEEEEKRM------------------EREREKERIRI 216
+ E +L E ++KE++ KRM E+EK+R +
Sbjct: 66 TQGMDTCEERLPLTE------EEKEKQTKRMMELIAQKQKEREEREKRERIEQEKQRRKQ 119
Query: 217 GKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLG------- 269
G+EL K+ +E E ++ + R+ EK+EEK AR+++R+K+ DKAER RR G
Sbjct: 120 GQELSAVKQKIQEQEMQKAVEDRRREKQEEKLARDRVREKIARDKAERARRFGGAGSEPI 179
Query: 270 LPPED---PATTKS-SAPVVEEKKHVAY 293
PP + PATT S S+PV E Y
Sbjct: 180 SPPAEASIPATTPSPSSPVQEPPTKKEY 207
>sp|Q6NXA9|UBXN1_DANRE UBX domain-containing protein 1 OS=Danio rerio GN=ubxn1 PE=2 SV=1
Length = 294
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 100/177 (56%), Gaps = 27/177 (15%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG--GGASK 175
L L MGF RA +A+ ++GN +E A++W++EHENDPDIDE P VP +G G A +
Sbjct: 7 LDSLLEMGFGRNRAEKAVAHTGNQGIERAMDWLMEHENDPDIDE-PYVPPAGNTLGPAEE 65
Query: 176 SSLTPEEIKLKAQELRE-RARKKKEEEEKRMERER-----------------------EK 211
S +P EI ++ E AR+ EEE++ + +R EK
Sbjct: 66 QSQSPTEIPESIEDTEEGNARQPMTEEERKEQVKRLEDLMKARQEERRERERQEGIEREK 125
Query: 212 ERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRL 268
+R + G+ELL+ ++ +E+E K++ R+ EK E++ A+++++ K+ D+ ER ++
Sbjct: 126 QRRKQGQELLQVRQKLQEDEMKKLADQRRKEKMEDRLAKQRVKDKIARDREERAQKF 182
>sp|Q6GLV4|UBX1B_XENLA UBX domain-containing protein 1-B OS=Xenopus laevis GN=ubxn1-b PE=2
SV=1
Length = 290
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 30/202 (14%)
Query: 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGA 173
D L+ L MGF +RA +AL +GN +E A++W+VEHE+DPDI E +V G
Sbjct: 3 DCSALESLIEMGFSPSRAEKALSATGNQGIEPAMDWLVEHEDDPDIKEPSVVIPEDSGTD 62
Query: 174 SKSSLTPEEIKLKAQELRERARKKKEEEEKRM------------------EREREKERIR 215
+ + + + A+ L ++KE++ KRM E+EK+R +
Sbjct: 63 TTDTTDTQAMDTSAERL-PLTEEEKEKQTKRMMELIAQKQKEREEREKRERIEQEKQRRK 121
Query: 216 IGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLG------ 269
G+EL K+ +E E ++ R+ EK+EE+ ARE++R+K+ DKA+R R+ G
Sbjct: 122 HGQELSAIKQRMQEQEMQKAAEDRRREKQEERLARERVREKIARDKADRARKFGGAGSEP 181
Query: 270 -LPPED---PATTKS-SAPVVE 286
PP + PAT S S+PV E
Sbjct: 182 ISPPAETSVPATAPSPSSPVQE 203
>sp|Q499N6|UBXN1_RAT UBX domain-containing protein 1 OS=Rattus norvegicus GN=Ubxn1 PE=2
SV=2
Length = 297
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 107/194 (55%), Gaps = 30/194 (15%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS--------- 168
L+ L MGFP RA +AL +GN +EAA++W++EHE+DPD+DE P+S
Sbjct: 7 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLSHILGREPTP 66
Query: 169 -------GGG---GASKSSLTPEEIKLKAQELRERARKKKEEEEKRMERERE---KERIR 215
G G G SK LT EE + + + + E +K+ E E+R ERE K+R R
Sbjct: 67 SEQVGPEGSGSAAGESKPVLTEEERQEQTKRMLELVAQKQREREEREEREALEREKQRRR 126
Query: 216 IGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLG------ 269
G+EL A++ +E+E +R R+ EK EE AR+++R+K+E DKAER ++ G
Sbjct: 127 QGQELSAARQKLQEDEIRRAAEERRREKAEELAARQRVREKIERDKAERAQKYGGTVGSR 186
Query: 270 --LPPEDPATTKSS 281
P DP SS
Sbjct: 187 SSPPATDPGPVPSS 200
>sp|Q922Y1|UBXN1_MOUSE UBX domain-containing protein 1 OS=Mus musculus GN=Ubxn1 PE=1 SV=1
Length = 297
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 107/194 (55%), Gaps = 30/194 (15%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS--------- 168
L+ L MGFP RA +AL +GN +EAA++W++EHE+DPD+DE P+S
Sbjct: 7 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLSHVLGREPTP 66
Query: 169 -------GGG---GASKSSLTPEEIKLKAQELRERARKKKEEEEKRMERERE---KERIR 215
G G G S+ LT EE + + + + E +K+ E E+R ERE K+R R
Sbjct: 67 SEQVGPEGSGSAAGESRPILTEEERQEQTKRMLELVAQKQREREEREEREALEREKQRRR 126
Query: 216 IGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLG------ 269
G+EL A++ +E+E +R R+ EK EE AR+++R+K+E DKAER ++ G
Sbjct: 127 QGQELSVARQKLQEDEMRRAAEERRREKAEELAARQRVREKIERDKAERAKKYGGSVGSR 186
Query: 270 --LPPEDPATTKSS 281
P DP SS
Sbjct: 187 SSPPATDPGPVPSS 200
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
P +D+ ++ +L MGFP+ +A++Y+GN+ EAA+NWV+ H +DPD ++P S G
Sbjct: 653 PMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 712
Query: 171 GGASKSSLTP 180
G++ ++ P
Sbjct: 713 PGSTSAAADP 722
>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5
PE=1 SV=1
Length = 858
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
P +D+ ++ +L MGFP+ +A++Y+GN+ EAA+NWV+ H +DPD ++P S G
Sbjct: 653 PMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 712
Query: 171 GGASKSSLTP 180
G++ ++ P
Sbjct: 713 PGSTSAAADP 722
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGG 170
P +D+ ++ +L MGFP+ +A++Y+GN+ EAA+NWV+ H +DPD ++P S G
Sbjct: 653 PMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSG 712
Query: 171 GGASKSSLTP 180
G++ ++ P
Sbjct: 713 PGSTSAAADP 722
>sp|Q32KW2|UBXN1_BOVIN UBX domain-containing protein 1 OS=Bos taurus GN=UBXN1 PE=2 SV=1
Length = 297
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 26/192 (13%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE---MPMVPVSG----- 169
L+ L MGFP RA +AL +GN +EAA++W++EHE+DPD+DE P+ V G
Sbjct: 7 LESLIEMGFPKGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLATPLGHVLGREPTP 66
Query: 170 ---GG--------GASKSSLTPEEIKLKAQELRERARKKKEEEEKRMEREREKERIRIGK 218
GG G K LT EE + + + + E +K+ E E+R ERE + + +
Sbjct: 67 SEQGGPKGPGSAVGEGKPVLTEEERQEQTKRMLELVAQKQREREEREEREALERERQRRR 126
Query: 219 E---LLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRR----LGLP 271
+ L A++ +E+E +R R+ EK EE AR+++R+K+E DKAER ++ +G
Sbjct: 127 QGQELTAARQRLQEDEMRRAAEERRREKAEELEARQRVREKIERDKAERAKKYGGNVGSQ 186
Query: 272 PEDPATTKSSAP 283
P PAT P
Sbjct: 187 PSPPATEPGPVP 198
>sp|Q04323|UBXN1_HUMAN UBX domain-containing protein 1 OS=Homo sapiens GN=UBXN1 PE=1 SV=2
Length = 297
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 22/174 (12%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE---MPMVPVSG----- 169
L+ L MGFP RA +AL +GN +EAA++W++EHE+DPD+DE P+ + G
Sbjct: 7 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLETPLGHILGREPTS 66
Query: 170 ---GG--------GASKSSLTPEEIKLKAQELRERARKKKEEEEKRMEREREKERIRIGK 218
GG G K +L+ EE + + + + E +K+ E E+R ERE + + +
Sbjct: 67 SEQGGLEGSGSAAGEGKPALSEEERQEQTKRMLELVAQKQREREEREEREALERERQRRR 126
Query: 219 E---LLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLG 269
+ L A++ +E+E +R R+ EK EE AR+++R+K+E DKAER ++ G
Sbjct: 127 QGQELSAARQRLQEDEMRRAAEERRREKAEELAARQRVREKIERDKAERAKKYG 180
>sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13
PE=2 SV=1
Length = 858
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 107 EMVEP-EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMV 165
++++P ++D+ + +L MGFP+ +A++++GN E A NW++ H +PD E +
Sbjct: 644 QLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNTGAEVAFNWIIVHMEEPDFAEPLAI 703
Query: 166 PVSGGGGASKSSLT------PEEI 183
P GG GAS T PEEI
Sbjct: 704 PGYGGAGASVFGATGLDNQPPEEI 727
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSGGG 171
++D+ + +L MGFP+ +A++Y+GN E A NW++ H +PD E +VPV GG
Sbjct: 647 DIDESSVMQLAEMGFPLEACRKAVYYTGNLGAEVAFNWIIAHMEEPDFAEPLVVPVFGGA 706
Query: 172 GAS 174
+S
Sbjct: 707 ASS 709
>sp|Q11119|UBP14_SCHPO Ubiquitin carboxyl-terminal hydrolase 14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp14 PE=1 SV=2
Length = 775
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 105 PEEMVEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
PE+ E ++ +++L+AMGFP+ R RAL +GN++ E A+NW+ EH DP+ID
Sbjct: 569 PEKTETIEWNQSAIEQLQAMGFPLVRCQRALLATGNSDTETAMNWLFEHMEDPEID 624
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 19/76 (25%)
Query: 106 EEMVEPEVDK-----ELL------------KELEAMGFPVARATRALHYSGNANVEAAVN 148
E M +PE+DK ELL + L GF VA+A + L S N N+E AV+
Sbjct: 616 EHMEDPEIDKPIEVSELLPKADSSVSEENVQSLCEFGFTVAQARKGLLESNN-NIERAVD 674
Query: 149 WVVEHENDPDIDEMPM 164
W++ H D +E P+
Sbjct: 675 WILNHP-DESFEEPPL 689
>sp|P54201|UBPA_DICDI Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum
GN=ubpA PE=2 SV=2
Length = 837
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
EP ++E+L L +M FP+ R +AL +G + E A+NW+ EH DPDID
Sbjct: 626 EPSFNQEVLDTLLSMDFPLVRCKKALLATGGKDAELAMNWIFEHTEDPDID 676
>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13
PE=2 SV=1
Length = 860
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167
PE+D+ + +L MGFP+ +A++Y+GN E A NW++ H +PD E VP
Sbjct: 634 PEIDESSVMQLAEMGFPLEACRKAVYYTGNMGAEMAFNWIIAHMEEPDFAEPLAVPT 690
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 72 DKTSEAAKPISLE--VPKATADSEEAIDVDMSGSQPEEMVEPEVDKELLKELEAMGFPVA 129
D A P +E +P + + A+D +QP E E + L +MGFP
Sbjct: 681 DFAEPLAVPTYMESDLPSPSLPTTSALD-----NQPPE--------ESISILTSMGFPRH 727
Query: 130 RATRALHYSGNANVEAAVNWVVEH 153
+AL S N N+E A++W+ H
Sbjct: 728 HTIQALKASNN-NLERALDWIFTH 750
>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana
GN=UBP14 PE=1 SV=1
Length = 797
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 22/120 (18%)
Query: 63 KRTGHTDFVDKTSEAAKPISLE---VPK---ATADSEEAIDVD-------------MSGS 103
K TG T F D + +E VPK D + ID+ +
Sbjct: 542 KTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQPGEELLPDG 601
Query: 104 QPEEMVE---PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
PEE++E P ++E++ +L +MGF +A + NA VE A+NW++ H +DPDID
Sbjct: 602 VPEEVMESAQPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDID 661
>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13
PE=3 SV=2
Length = 863
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 107 EMVEP-EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMV 165
++++P ++D+ + +L MGFP+ +A++++GN E A NW+V H +PD E +
Sbjct: 646 QLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIVVHMEEPDFAEPLTM 705
Query: 166 P 166
P
Sbjct: 706 P 706
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 107 EMVEP-EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMV 165
++++P ++D+ + +L MGFP+ +A++++GN E A NW++ H +PD E +
Sbjct: 646 QLIDPSDIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTM 705
Query: 166 P 166
P
Sbjct: 706 P 706
>sp|Q92575|UBXN4_HUMAN UBX domain-containing protein 4 OS=Homo sapiens GN=UBXN4 PE=1 SV=2
Length = 508
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 209 REKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRL 268
+E ER + GKE+L+ KR +EE KR+L R EK E++ ARE+I+Q++ D+AER R
Sbjct: 224 KEIERRKTGKEMLDYKRKQEEELTKRMLEERNREKAEDRAARERIKQQIALDRAERAARF 283
Query: 269 G 269
Sbjct: 284 A 284
>sp|Q5R4I3|UBXN4_PONAB UBX domain-containing protein 4 OS=Pongo abelii GN=UBXN4 PE=2 SV=1
Length = 508
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 209 REKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRL 268
+E ER + GKE+L+ KR +EE KR+L R EK E++ ARE+I+Q++ D+AER R
Sbjct: 224 KEIERRKTGKEMLDYKRKQEEELTKRMLEERNREKAEDRAARERIKQQIALDRAERAARF 283
Query: 269 G 269
Sbjct: 284 A 284
>sp|Q3ZBU9|UBXN4_BOVIN UBX domain-containing protein 4 OS=Bos taurus GN=UBXN4 PE=2 SV=2
Length = 508
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 209 REKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRL 268
+E ER + GKE+L+ KR +EE KR+L R EK E++ ARE+I+Q++ D+AER R
Sbjct: 224 KEIERRKTGKEMLDYKRKQEEELTKRMLEERNREKAEDRAARERIKQQIALDRAERAARF 283
Query: 269 G 269
Sbjct: 284 A 284
>sp|Q8VCH8|UBXN4_MOUSE UBX domain-containing protein 4 OS=Mus musculus GN=Ubxn4 PE=1 SV=1
Length = 506
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 206 EREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERR 265
E ++E ER + GKE+L+ KR +EE KR+L R EK E++ ARE+I+Q++ D+AER
Sbjct: 220 EIKKEIERRKTGKEMLDYKRKQEEELTKRMLEERSREKAEDRAARERIKQQIALDRAERA 279
Query: 266 RRL 268
R
Sbjct: 280 ARF 282
>sp|Q5HZY0|UBXN4_RAT UBX domain-containing protein 4 OS=Rattus norvegicus GN=Ubxn4 PE=2
SV=1
Length = 506
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 206 EREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERR 265
E ++E ER + GKE+L+ KR +EE KR+L R EK E++ ARE+I+Q++ D+AER
Sbjct: 220 EIKKEIERRKTGKEMLDYKRKQEEELTKRMLEERSREKAEDRAARERIKQQIALDRAERA 279
Query: 266 RRL 268
R
Sbjct: 280 ARF 282
>sp|Q9BSL1|UBAC1_HUMAN Ubiquitin-associated domain-containing protein 1 OS=Homo sapiens
GN=UBAC1 PE=1 SV=1
Length = 405
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVSG 169
L++L MGFP RAT+AL + + +V A+ W++EH DP ID P+ G
Sbjct: 197 LRQLTEMGFPENRATKALQLN-HMSVPQAMEWLIEHAEDPTID----TPLPG 243
>sp|Q5XIR9|UBAC1_RAT Ubiquitin-associated domain-containing protein 1 OS=Rattus
norvegicus GN=Ubac1 PE=2 SV=1
Length = 409
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
L++L MGFP +RA++AL + + +V A+ W++EH DP ID
Sbjct: 197 LRQLTEMGFPESRASKALRLN-HMSVPQAMEWLIEHSEDPAID 238
>sp|Q8VDI7|UBAC1_MOUSE Ubiquitin-associated domain-containing protein 1 OS=Mus musculus
GN=Ubac1 PE=2 SV=2
Length = 409
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
L++L MGFP +RA++AL + + +V A+ W++EH DP ID
Sbjct: 197 LRQLTEMGFPESRASKALRLN-HMSVPQAMEWLIEHSEDPAID 238
>sp|Q5ZJI9|UBAC1_CHICK Ubiquitin-associated domain-containing protein 1 OS=Gallus gallus
GN=UBAC1 PE=2 SV=1
Length = 408
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
L++L MGFP +RA +AL + + +V A+ W++EH +DP +D
Sbjct: 197 LRQLTEMGFPESRAVKALRLN-HMSVTQAMEWLIEHADDPAVD 238
>sp|Q28DG7|UBAC1_XENTR Ubiquitin-associated domain-containing protein 1 OS=Xenopus
tropicalis GN=ubac1 PE=2 SV=1
Length = 406
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 118 LKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDID 160
L++L MGFP +RA +AL + + +V A+ W++EH +DP D
Sbjct: 197 LRQLTEMGFPESRAVKALRLN-HMSVTQAMEWLIEHADDPAAD 238
>sp|Q10483|YDFB_SCHPO Uncharacterized protein C17C9.11c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17C9.11c PE=4 SV=2
Length = 240
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAV 40
LKC +C LL S++ A+ H+ TSH F E+ E +
Sbjct: 3 LKCLECDKLLSSIEMAEFHSTKTSHDQFEETEEEI 37
>sp|Q55GF9|ICPA_DICDI Inner centromere protein A OS=Dictyostelium discoideum GN=icpA PE=1
SV=1
Length = 1320
Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 20/91 (21%)
Query: 197 KKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRILALR----------------- 239
K+EE+ + E E+E+ER+ K+ E ++ EEN+++RIL
Sbjct: 709 KQEEQLAKREVEKEQERLEKKKKNDEKRKKVEENQQQRILEEEKKKKEAEDRELARKHKE 768
Query: 240 ---KAEKEEEKRAREKIRQKLEEDKAERRRR 267
K ++EEE+ A+++I+++ E + + R+R
Sbjct: 769 DSDKKKREEEEDAKKRIQERFRETQEQERKR 799
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,819,139
Number of Sequences: 539616
Number of extensions: 5022859
Number of successful extensions: 90795
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 2975
Number of HSP's that attempted gapping in prelim test: 45988
Number of HSP's gapped (non-prelim): 23578
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)