Query 022703
Match_columns 293
No_of_seqs 284 out of 469
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ihp_A Ubiquitin carboxyl-term 99.9 6.1E-23 2.1E-27 215.3 5.8 121 40-167 560-705 (854)
2 2crn_A Ubash3A protein; compac 99.8 5.9E-19 2E-23 131.0 6.4 58 111-168 6-63 (64)
3 1vek_A UBP14, ubiquitin-specif 99.7 2.8E-17 9.6E-22 128.0 7.8 59 110-168 25-83 (84)
4 2dag_A Ubiquitin carboxyl-term 99.7 3.4E-17 1.2E-21 124.7 7.6 59 110-168 5-63 (74)
5 1whc_A RSGI RUH-027, UBA/UBX 3 99.6 1.3E-16 4.6E-21 118.2 6.1 54 111-164 6-59 (64)
6 2dai_A Ubadc1, ubiquitin assoc 99.6 3E-16 1E-20 122.0 7.5 57 111-168 26-82 (83)
7 2dak_A Ubiquitin carboxyl-term 99.6 2.2E-16 7.5E-21 116.5 6.4 56 111-167 6-61 (63)
8 2lbc_A Ubiquitin carboxyl-term 99.6 1E-14 3.4E-19 120.6 9.1 56 112-167 1-56 (126)
9 2cpw_A CBL-interacting protein 99.5 1E-14 3.4E-19 108.1 4.2 46 113-158 18-63 (64)
10 1wgn_A UBAP1, ubiquitin associ 99.4 6.2E-14 2.1E-18 102.7 4.8 42 114-156 19-60 (63)
11 1wji_A Tudor domain containing 99.4 5.3E-13 1.8E-17 98.6 7.9 55 112-167 7-61 (63)
12 1wiv_A UBP14, ubiquitin-specif 99.3 1.5E-12 5.2E-17 98.7 6.2 48 110-158 25-72 (73)
13 2ekk_A UBA domain from E3 ubiq 99.3 1.1E-12 3.7E-17 91.2 4.6 43 110-154 5-47 (47)
14 1dv0_A DNA repair protein HHR2 99.3 5.3E-13 1.8E-17 93.2 2.1 45 113-158 3-47 (47)
15 2dkl_A Trinucleotide repeat co 99.3 8E-12 2.7E-16 97.4 7.5 50 111-161 18-67 (85)
16 2g3q_A Protein YBL047C; endocy 99.3 3.5E-12 1.2E-16 86.8 4.5 40 113-153 3-42 (43)
17 4ae4_A Ubiquitin-associated pr 99.2 2E-12 6.7E-17 106.5 3.1 50 112-162 6-57 (118)
18 1veg_A NEDD8 ultimate buster-1 99.2 1.5E-11 5.1E-16 95.6 7.7 47 110-157 25-71 (83)
19 2cos_A Serine/threonine protei 99.2 1.1E-11 3.8E-16 88.4 5.1 42 111-152 6-47 (54)
20 2lbc_A Ubiquitin carboxyl-term 99.2 2.1E-11 7E-16 100.7 6.0 48 112-160 76-124 (126)
21 1ify_A HHR23A, UV excision rep 99.1 4.1E-11 1.4E-15 84.1 4.7 41 112-153 6-46 (49)
22 2jy5_A Ubiquilin-1; UBA, alter 99.0 1.8E-10 6.2E-15 81.8 5.0 40 114-154 12-52 (52)
23 1vg5_A RSGI RUH-014, rhomboid 99.0 4E-10 1.4E-14 85.5 6.3 45 111-156 26-70 (73)
24 2knz_A Ubiquilin-4; cytoplasm, 99.0 3.6E-10 1.2E-14 80.5 5.6 39 115-154 12-51 (53)
25 1z96_A DNA-damage, UBA-domain 98.9 1.1E-09 3.9E-14 72.6 4.9 36 115-151 5-40 (40)
26 2dah_A Ubiquilin-3; UBA domain 98.8 4.9E-09 1.7E-13 75.1 5.8 43 114-157 9-52 (54)
27 2bwb_A Ubiquitin-like protein 98.8 4.9E-09 1.7E-13 72.7 5.3 39 114-153 7-46 (46)
28 2dna_A Unnamed protein product 98.8 4.1E-09 1.4E-13 78.7 5.0 42 115-157 20-62 (67)
29 1vej_A Riken cDNA 4931431F19; 98.8 7.3E-09 2.5E-13 78.8 5.4 43 114-157 29-72 (74)
30 1wr1_B Ubiquitin-like protein 98.7 1E-08 3.5E-13 74.5 5.3 40 114-154 17-57 (58)
31 4ae4_A Ubiquitin-associated pr 98.6 3.2E-08 1.1E-12 81.3 5.1 43 111-154 73-115 (118)
32 1oqy_A HHR23A, UV excision rep 98.5 3.6E-08 1.2E-12 94.9 2.7 46 111-157 165-210 (368)
33 2ooa_A E3 ubiquitin-protein li 98.4 6.5E-07 2.2E-11 63.4 6.0 40 113-153 10-49 (52)
34 2cwb_A Chimera of immunoglobul 98.3 7.3E-07 2.5E-11 72.3 5.9 41 114-155 66-107 (108)
35 3i3t_A Ubiquitin carboxyl-term 98.3 1.1E-07 3.7E-12 87.2 0.1 52 42-100 226-283 (355)
36 2juj_A E3 ubiquitin-protein li 98.2 9.5E-07 3.2E-11 63.2 4.5 44 111-155 4-47 (56)
37 2d9s_A CBL E3 ubiquitin protei 98.2 2.9E-06 1E-10 60.4 6.5 43 112-155 7-49 (53)
38 1oqy_A HHR23A, UV excision rep 98.2 4.1E-07 1.4E-11 87.6 2.4 45 112-157 323-367 (368)
39 2ayn_A Ubiquitin carboxyl-term 98.2 5.9E-07 2E-11 84.5 2.7 58 32-100 203-267 (404)
40 2y6e_A Ubiquitin carboxyl-term 98.1 4.2E-07 1.4E-11 84.9 0.6 53 41-100 230-288 (367)
41 1vjv_A Ubiquitin carboxyl-term 98.1 9.4E-08 3.2E-12 90.9 -3.9 53 41-100 200-259 (415)
42 2oo9_A E3 ubiquitin-protein li 98.0 1E-05 3.5E-10 55.8 5.9 39 115-154 5-43 (46)
43 3mhs_A Ubiquitin carboxyl-term 98.0 3.7E-07 1.3E-11 88.4 -2.6 51 43-100 339-395 (476)
44 3nhe_A Ubiquitin carboxyl-term 98.0 2E-06 6.9E-11 78.5 2.1 53 41-100 215-273 (348)
45 2gfo_A Ubiquitin carboxyl-term 98.0 1.4E-06 4.7E-11 83.1 0.7 53 41-100 267-325 (396)
46 2cp8_A NEXT to BRCA1 gene 1 pr 97.8 2.6E-05 8.9E-10 55.8 4.9 44 113-157 8-52 (54)
47 1nb8_A Ubiquitin carboxyl-term 97.8 7.6E-06 2.6E-10 76.5 2.5 51 42-100 171-228 (353)
48 3ihp_A Ubiquitin carboxyl-term 97.8 1.4E-05 4.6E-10 84.2 4.6 46 111-157 717-762 (854)
49 1wiv_A UBP14, ubiquitin-specif 97.8 1.6E-06 5.3E-11 65.5 -1.9 38 144-190 2-39 (73)
50 3k9o_A Ubiquitin-conjugating e 97.7 4.2E-05 1.4E-09 67.3 5.6 38 115-153 164-201 (201)
51 2qsf_X RAD23, UV excision repa 97.6 3.7E-05 1.3E-09 66.8 4.2 43 113-156 129-171 (171)
52 2f1z_A Ubiquitin carboxyl-term 97.6 2.1E-05 7.3E-10 77.4 2.4 51 42-100 340-397 (522)
53 1wj7_A Hypothetical protein (R 97.4 0.00021 7.2E-09 57.4 5.4 41 115-156 40-81 (104)
54 3e46_A Ubiquitin-conjugating e 96.1 0.0067 2.3E-07 55.5 5.7 38 115-153 216-253 (253)
55 1wgl_A TOLL-interacting protei 95.1 0.041 1.4E-06 39.7 5.4 46 110-157 5-53 (59)
56 2eps_A POZ-, at HOOK-, and zin 94.2 0.077 2.6E-06 35.4 5.0 42 3-52 10-51 (54)
57 2cp9_A EF-TS, EF-TSMT, elongat 94.2 0.076 2.6E-06 39.0 5.1 42 111-153 6-48 (64)
58 2dmi_A Teashirt homolog 3; zin 93.2 0.15 5.3E-06 38.5 5.7 44 3-52 17-60 (115)
59 6rxn_A Rubredoxin; electron tr 93.1 0.024 8.3E-07 39.0 0.8 36 5-51 4-39 (46)
60 2drp_A Protein (tramtrack DNA- 92.8 0.038 1.3E-06 37.9 1.6 43 3-52 8-50 (66)
61 2ct1_A Transcriptional repress 92.5 0.085 2.9E-06 37.3 3.1 44 2-52 12-55 (77)
62 2d9h_A Zinc finger protein 692 92.3 0.049 1.7E-06 38.7 1.6 44 2-51 4-47 (78)
63 4gzn_C ZFP-57, zinc finger pro 92.1 0.066 2.2E-06 37.8 2.1 40 4-52 3-42 (60)
64 1bbo_A Human enhancer-binding 92.0 0.068 2.3E-06 35.3 2.0 38 6-52 2-39 (57)
65 1x6e_A Zinc finger protein 24; 91.7 0.087 3E-06 36.9 2.3 42 2-52 11-52 (72)
66 2ghf_A ZHX1, zinc fingers and 91.6 0.13 4.5E-06 40.1 3.5 46 2-52 15-60 (102)
67 3uk3_C Zinc finger protein 217 91.5 0.055 1.9E-06 35.8 1.0 40 4-52 3-42 (57)
68 2epr_A POZ-, at HOOK-, and zin 91.4 0.18 6.2E-06 32.5 3.4 39 3-50 10-48 (48)
69 2lce_A B-cell lymphoma 6 prote 91.3 0.085 2.9E-06 37.1 1.9 41 3-52 15-55 (74)
70 2epq_A POZ-, at HOOK-, and zin 91.2 0.17 5.8E-06 32.0 3.1 39 2-49 7-45 (45)
71 2adr_A ADR1; transcription reg 91.2 0.12 4.2E-06 34.5 2.5 39 5-52 2-40 (60)
72 1x5w_A Zinc finger protein 64, 91.0 0.13 4.5E-06 35.7 2.7 42 2-52 6-47 (70)
73 2dhy_A CUE domain-containing p 90.7 0.25 8.4E-06 36.5 3.9 42 113-156 17-61 (67)
74 2ctd_A Zinc finger protein 512 90.4 0.21 7E-06 37.9 3.5 40 4-53 33-73 (96)
75 1q02_A Sequestosome 1; helical 90.4 0.21 7.1E-06 35.2 3.1 34 116-150 12-47 (52)
76 2yt9_A Zinc finger-containing 90.0 0.28 9.7E-06 35.5 3.8 23 4-26 6-28 (95)
77 1x6h_A Transcriptional repress 89.7 0.23 7.8E-06 35.3 3.0 44 2-51 12-56 (86)
78 2gqj_A Zinc finger protein KIA 89.6 0.18 6.1E-06 37.8 2.5 42 3-52 22-64 (98)
79 2kn9_A Rubredoxin; metalloprot 89.4 0.043 1.5E-06 42.1 -1.1 43 5-51 27-69 (81)
80 2cot_A Zinc finger protein 435 89.1 0.19 6.7E-06 35.4 2.3 41 3-52 16-56 (77)
81 1yk4_A Rubredoxin, RD; electro 89.1 0.047 1.6E-06 38.4 -1.1 43 5-51 2-44 (52)
82 4rxn_A Rubredoxin; electron tr 89.0 0.044 1.5E-06 38.9 -1.2 43 5-51 3-45 (54)
83 2lv2_A Insulinoma-associated p 88.8 0.21 7.1E-06 37.6 2.4 40 4-52 27-66 (85)
84 1e8j_A Rubredoxin; iron-sulfur 88.7 0.063 2.1E-06 37.7 -0.6 43 5-51 3-45 (52)
85 1vd4_A Transcription initiatio 88.0 0.37 1.3E-05 33.1 3.1 39 2-52 11-49 (62)
86 3a43_A HYPD, hydrogenase nicke 87.9 0.34 1.1E-05 40.2 3.2 39 4-51 69-116 (139)
87 2v3b_B Rubredoxin 2, rubredoxi 87.5 0.056 1.9E-06 38.4 -1.5 43 5-51 3-45 (55)
88 1s24_A Rubredoxin 2; electron 87.0 0.063 2.1E-06 41.7 -1.6 44 4-51 34-77 (87)
89 2yt9_A Zinc finger-containing 86.9 0.29 1E-05 35.4 2.1 43 3-52 33-75 (95)
90 2dmd_A Zinc finger protein 64, 86.9 0.39 1.3E-05 34.8 2.8 23 4-26 7-29 (96)
91 2ee8_A Protein ODD-skipped-rel 86.3 0.58 2E-05 34.6 3.5 41 4-53 16-56 (106)
92 1dx8_A Rubredoxin; electron tr 86.1 0.077 2.6E-06 39.5 -1.4 44 4-51 6-49 (70)
93 1a1h_A QGSR zinc finger peptid 86.0 0.4 1.4E-05 34.2 2.4 20 6-25 35-54 (90)
94 1wjp_A Zinc finger protein 295 85.9 0.54 1.9E-05 35.1 3.2 40 3-53 14-53 (107)
95 2dlq_A GLI-kruppel family memb 85.3 0.49 1.7E-05 35.7 2.7 45 2-55 4-48 (124)
96 2kmk_A Zinc finger protein GFI 85.2 0.4 1.4E-05 33.5 2.1 20 7-26 3-22 (82)
97 2ee8_A Protein ODD-skipped-rel 84.9 0.53 1.8E-05 34.8 2.7 42 4-54 44-85 (106)
98 2dmd_A Zinc finger protein 64, 84.8 0.32 1.1E-05 35.3 1.4 40 4-52 35-74 (96)
99 2eod_A TNF receptor-associated 84.8 0.67 2.3E-05 31.8 3.0 39 3-52 8-47 (66)
100 1otr_A Protein CUE2; protein-p 84.8 1.8 6.2E-05 29.9 5.1 41 115-156 5-47 (49)
101 2csh_A Zinc finger protein 297 84.7 0.55 1.9E-05 35.1 2.8 40 3-52 8-47 (110)
102 2ytk_A Zinc finger protein 347 84.6 1.1 3.8E-05 28.0 3.8 38 2-48 9-46 (46)
103 1llm_C Chimera of ZIF23-GCN4; 84.5 0.31 1E-05 35.3 1.2 40 5-53 3-42 (88)
104 2wbt_A B-129; zinc finger; 2.7 84.5 0.52 1.8E-05 36.4 2.6 38 4-52 73-110 (129)
105 2dlq_A GLI-kruppel family memb 84.4 0.47 1.6E-05 35.8 2.3 23 5-27 35-57 (124)
106 2emy_A Zinc finger protein 268 84.3 1.2 4.1E-05 27.9 3.9 38 2-48 9-46 (46)
107 2pwq_A Ubiquitin conjugating e 84.1 0.2 6.9E-06 44.5 0.0 37 115-152 178-214 (216)
108 2epx_A Zinc finger protein 28 84.0 0.99 3.4E-05 28.2 3.4 38 3-48 10-47 (47)
109 2kmk_A Zinc finger protein GFI 83.6 0.5 1.7E-05 33.0 2.0 40 4-52 28-67 (82)
110 2ema_A Zinc finger protein 347 83.3 1.1 3.8E-05 28.0 3.4 38 2-48 9-46 (46)
111 2rpc_A Zinc finger protein ZIC 82.9 0.78 2.7E-05 36.3 3.1 51 3-54 23-74 (155)
112 2eov_A Zinc finger protein 484 82.8 1.3 4.4E-05 27.6 3.5 38 2-48 9-46 (46)
113 2el6_A Zinc finger protein 268 82.7 1.5 5.1E-05 27.5 3.8 38 2-48 9-46 (46)
114 2emm_A ZFP-95, zinc finger pro 82.6 1.5 5.1E-05 27.3 3.8 38 2-48 9-46 (46)
115 2csh_A Zinc finger protein 297 82.5 0.44 1.5E-05 35.6 1.4 40 4-52 36-75 (110)
116 2epw_A Zinc finger protein 268 82.5 1.5 5E-05 27.4 3.7 38 2-48 9-46 (46)
117 2dlk_A Novel protein; ZF-C2H2 82.5 1.6 5.4E-05 30.3 4.2 52 4-63 6-61 (79)
118 2em5_A ZFP-95, zinc finger pro 82.4 1.4 4.7E-05 27.7 3.6 38 2-48 9-46 (46)
119 2enc_A Zinc finger protein 224 82.4 1.7 5.9E-05 27.1 4.0 37 3-48 10-46 (46)
120 2ytd_A Zinc finger protein 473 82.3 1.5 5.1E-05 27.4 3.7 38 2-48 9-46 (46)
121 2emx_A Zinc finger protein 268 82.3 1.6 5.4E-05 27.0 3.8 38 2-48 7-44 (44)
122 2emh_A Zinc finger protein 484 82.3 1.5 5E-05 27.4 3.7 38 2-48 9-46 (46)
123 2eml_A Zinc finger protein 28 82.2 1.5 5.2E-05 27.4 3.7 38 2-48 9-46 (46)
124 2emf_A Zinc finger protein 484 82.0 1.4 4.8E-05 27.6 3.5 38 2-48 9-46 (46)
125 1f2i_G Fusion of N-terminal 17 82.0 0.78 2.7E-05 31.6 2.4 41 3-52 17-59 (73)
126 2emk_A Zinc finger protein 28 81.9 1.5 5E-05 27.5 3.6 38 2-48 9-46 (46)
127 1wjp_A Zinc finger protein 295 81.9 0.42 1.4E-05 35.8 1.0 38 5-52 42-79 (107)
128 2yso_A ZFP-95, zinc finger pro 81.9 1.6 5.5E-05 27.3 3.7 37 3-48 10-46 (46)
129 2eoo_A ZFP-95, zinc finger pro 81.9 1.8 6.1E-05 27.1 4.0 38 2-48 9-46 (46)
130 2ytj_A Zinc finger protein 484 81.9 1.9 6.5E-05 26.9 4.1 38 2-48 9-46 (46)
131 2eme_A Zinc finger protein 473 81.7 1.7 6E-05 27.0 3.9 38 2-48 9-46 (46)
132 2ep2_A Zinc finger protein 484 81.6 1.7 6E-05 27.1 3.8 38 2-48 9-46 (46)
133 2en6_A Zinc finger protein 268 81.6 1.5 5.1E-05 27.4 3.5 38 2-48 9-46 (46)
134 2en8_A Zinc finger protein 224 81.6 1.4 4.8E-05 27.4 3.4 38 2-48 9-46 (46)
135 2eop_A Zinc finger protein 268 81.4 1.3 4.6E-05 27.5 3.2 38 2-48 9-46 (46)
136 2ej4_A Zinc finger protein ZIC 81.4 1.1 3.9E-05 32.3 3.2 47 5-52 25-72 (95)
137 2kdx_A HYPA, hydrogenase/ureas 81.4 0.69 2.4E-05 36.9 2.2 27 4-51 72-99 (119)
138 2em7_A Zinc finger protein 224 81.4 1.4 4.8E-05 27.5 3.3 38 2-48 9-46 (46)
139 2eoe_A Zinc finger protein 347 81.3 1.3 4.4E-05 27.6 3.1 38 2-48 9-46 (46)
140 2em0_A Zinc finger protein 224 81.3 1.3 4.6E-05 27.6 3.2 38 2-48 9-46 (46)
141 2ytn_A Zinc finger protein 347 81.2 1.3 4.5E-05 27.7 3.1 38 2-48 9-46 (46)
142 2el4_A Zinc finger protein 268 81.2 1.6 5.4E-05 27.2 3.5 38 2-48 9-46 (46)
143 2eq4_A Zinc finger protein 224 81.2 1.7 5.8E-05 27.0 3.7 38 2-48 9-46 (46)
144 2eoq_A Zinc finger protein 224 81.2 1.7 5.7E-05 27.2 3.6 37 3-48 10-46 (46)
145 2lt7_A Transcriptional regulat 80.9 0.53 1.8E-05 37.8 1.3 40 4-52 21-60 (133)
146 2ene_A Zinc finger protein 347 80.6 1.7 5.9E-05 27.1 3.5 38 2-48 9-46 (46)
147 2ep0_A Zinc finger protein 28 80.6 1.7 5.7E-05 27.2 3.5 38 2-48 9-46 (46)
148 2epz_A Zinc finger protein 28 80.5 1.6 5.3E-05 27.3 3.3 37 3-48 10-46 (46)
149 2em8_A Zinc finger protein 224 80.5 1.9 6.6E-05 26.9 3.8 37 3-48 10-46 (46)
150 2emp_A Zinc finger protein 347 80.3 1.9 6.4E-05 26.9 3.7 38 2-48 9-46 (46)
151 2ytq_A Zinc finger protein 268 80.1 1.6 5.4E-05 27.4 3.2 38 2-48 9-46 (46)
152 2eq0_A Zinc finger protein 347 80.1 1.8 6.2E-05 27.0 3.5 38 2-48 9-46 (46)
153 2yu8_A Zinc finger protein 347 79.7 1.4 4.8E-05 27.5 2.9 38 2-48 9-46 (46)
154 2ely_A Zinc finger protein 224 79.6 1.5 5.2E-05 27.4 3.1 37 3-48 10-46 (46)
155 2en1_A Zinc finger protein 224 79.6 1.6 5.4E-05 27.3 3.1 38 2-48 9-46 (46)
156 1ubd_C Protein (YY1 zinc finge 79.3 0.98 3.3E-05 34.2 2.3 42 2-53 2-45 (124)
157 2ysp_A Zinc finger protein 224 79.0 1.8 6E-05 27.1 3.2 38 2-48 9-46 (46)
158 2ytm_A Zinc finger protein 28 79.0 1.7 5.9E-05 27.3 3.1 37 3-48 10-46 (46)
159 2ytr_A Zinc finger protein 347 78.7 1.5 5.2E-05 27.3 2.8 37 3-48 10-46 (46)
160 2em9_A Zinc finger protein 224 78.5 1.9 6.6E-05 26.8 3.3 38 2-48 9-46 (46)
161 2elz_A Zinc finger protein 224 78.3 1.8 6E-05 27.1 3.0 37 3-48 10-46 (46)
162 2kna_A Baculoviral IAP repeat- 77.7 3.9 0.00013 32.2 5.5 66 116-188 29-100 (104)
163 1ixs_A Holliday junction DNA h 77.0 3.2 0.00011 29.7 4.4 26 113-138 16-41 (62)
164 2em2_A Zinc finger protein 28 76.6 3.1 0.0001 25.9 3.8 38 2-48 9-46 (46)
165 1aip_C EF-TS, elongation facto 76.5 2.1 7.3E-05 37.7 3.9 37 116-153 5-42 (196)
166 2ytt_A Zinc finger protein 473 76.1 2 6.8E-05 26.8 2.8 37 3-48 10-46 (46)
167 2i13_A AART; DNA binding, zinc 76.0 0.86 2.9E-05 37.4 1.3 22 5-26 105-126 (190)
168 2ida_A Hypothetical protein; z 76.0 1.4 4.6E-05 35.0 2.3 41 7-50 36-83 (102)
169 1xb2_B EF-TS, elongation facto 75.8 2.1 7.2E-05 39.7 3.9 39 113-152 3-42 (291)
170 2jp9_A Wilms tumor 1; DNA bind 75.8 1.1 3.7E-05 33.5 1.7 22 5-26 36-59 (119)
171 2k5c_A Uncharacterized protein 75.8 2.1 7.2E-05 33.0 3.2 12 5-16 8-19 (95)
172 2ytg_A ZFP-95, zinc finger pro 75.3 1.3 4.6E-05 27.6 1.8 38 2-48 9-46 (46)
173 2ep3_A Zinc finger protein 484 75.2 3 0.0001 25.9 3.5 38 2-48 9-46 (46)
174 1tte_A Ubiquitin-conjugating e 74.9 2 7E-05 37.9 3.4 28 113-140 168-195 (215)
175 1tr8_A Conserved protein (MTH1 72.8 4.1 0.00014 32.1 4.4 39 111-150 62-101 (102)
176 2ebt_A Krueppel-like factor 5; 72.2 2.7 9.1E-05 30.3 3.0 21 6-26 16-38 (100)
177 2wbs_A Krueppel-like factor 4; 72.2 2.1 7.1E-05 30.2 2.4 20 6-25 6-27 (89)
178 1twf_L ABC10-alpha, DNA-direct 72.1 2.5 8.4E-05 31.3 2.8 14 3-16 26-39 (70)
179 3rk3_E Complexin-1; snare prot 71.7 10 0.00036 27.3 5.8 35 223-257 11-46 (63)
180 2lt7_A Transcriptional regulat 69.3 3.8 0.00013 32.7 3.6 50 5-63 50-99 (133)
181 2j7j_A Transcription factor II 69.1 1.6 5.4E-05 30.4 1.1 20 6-25 2-23 (85)
182 2elm_A Zinc finger protein 406 69.0 5 0.00017 23.8 3.3 28 3-31 7-34 (37)
183 3iuf_A Zinc finger protein UBI 68.1 5.3 0.00018 25.5 3.5 30 2-32 4-33 (48)
184 2i13_A AART; DNA binding, zinc 67.4 2.1 7.2E-05 35.0 1.7 21 6-26 50-70 (190)
185 1paa_A Yeast transcription fac 66.6 3.2 0.00011 22.8 1.9 22 6-27 3-24 (30)
186 2elx_A Zinc finger protein 406 66.5 5.5 0.00019 22.7 3.1 26 2-27 4-29 (35)
187 2kvh_A Zinc finger and BTB dom 64.5 5.6 0.00019 21.4 2.7 22 5-26 3-24 (27)
188 3c5k_A HD6, histone deacetylas 64.1 2.2 7.6E-05 33.9 1.2 42 7-50 38-82 (109)
189 2kvf_A Zinc finger and BTB dom 64.1 5.2 0.00018 21.6 2.5 22 5-26 3-24 (28)
190 2elr_A Zinc finger protein 406 64.1 5.5 0.00019 23.0 2.8 24 3-26 7-30 (36)
191 2elq_A Zinc finger protein 406 63.8 6.5 0.00022 22.8 3.0 24 3-26 7-30 (36)
192 2els_A Zinc finger protein 406 63.5 6.4 0.00022 22.8 3.0 24 3-26 7-30 (36)
193 2ctu_A Zinc finger protein 483 63.3 0.51 1.7E-05 32.2 -2.5 36 3-54 16-51 (73)
194 1srk_A Zinc finger protein ZFP 62.8 6.5 0.00022 22.6 2.9 24 3-26 5-28 (35)
195 1znf_A 31ST zinc finger from X 62.5 4.8 0.00016 21.5 2.1 21 6-26 2-22 (27)
196 1p7a_A BF3, BKLF, kruppel-like 62.3 6 0.0002 23.0 2.7 24 3-26 9-32 (37)
197 1ard_A Yeast transcription fac 62.0 5.6 0.00019 21.4 2.4 22 6-27 3-24 (29)
198 1njq_A Superman protein; zinc- 61.6 7.1 0.00024 23.2 3.0 28 2-31 3-30 (39)
199 1a1h_A QGSR zinc finger peptid 61.5 3.5 0.00012 29.1 1.7 40 4-52 3-44 (90)
200 1rik_A E6APC1 peptide; E6-bind 61.5 5.3 0.00018 21.6 2.2 22 5-26 2-23 (29)
201 2elv_A Zinc finger protein 406 60.8 7.5 0.00026 22.5 2.9 24 3-26 7-30 (36)
202 2dlk_A Novel protein; ZF-C2H2 60.5 4.8 0.00016 27.7 2.3 41 3-52 36-78 (79)
203 2dal_A Protein KIAA0794; FAS a 60.2 24 0.00082 24.9 6.0 41 115-156 16-57 (62)
204 2kvg_A Zinc finger and BTB dom 60.0 5.7 0.00019 21.6 2.1 21 5-25 3-23 (27)
205 1zu1_A DSRBP-ZFA, RNA binding 59.8 2 6.8E-05 34.6 0.1 63 5-67 32-118 (127)
206 2m0f_A Zinc finger and BTB dom 59.7 7.3 0.00025 20.8 2.6 23 5-27 2-24 (29)
207 2elo_A Zinc finger protein 406 59.1 7 0.00024 22.7 2.6 24 3-26 7-30 (37)
208 2m0d_A Zinc finger and BTB dom 59.1 7.5 0.00026 20.9 2.6 22 5-26 3-24 (30)
209 2gmg_A Hypothetical protein PF 59.0 4.8 0.00016 32.1 2.2 10 6-15 68-77 (105)
210 2adr_A ADR1; transcription reg 58.9 9.1 0.00031 24.9 3.4 28 3-31 28-55 (60)
211 2elt_A Zinc finger protein 406 58.5 9.3 0.00032 21.9 3.1 24 3-26 7-30 (36)
212 2gli_A Protein (five-finger GL 58.1 6.9 0.00023 30.5 3.1 24 4-27 2-25 (155)
213 1klr_A Zinc finger Y-chromosom 56.9 6.2 0.00021 21.3 1.9 22 6-27 3-24 (30)
214 2ent_A Krueppel-like factor 15 56.6 12 0.00042 23.0 3.6 38 2-48 9-48 (48)
215 2epc_A Zinc finger protein 32; 55.2 11 0.00038 22.5 3.1 26 2-27 8-33 (42)
216 4dbg_B Ring finger protein 31; 55.1 7.9 0.00027 33.1 3.1 35 117-152 105-140 (162)
217 1fv5_A First zinc finger of U- 55.0 9 0.00031 24.0 2.7 23 3-25 6-28 (36)
218 2elp_A Zinc finger protein 406 54.4 10 0.00034 22.0 2.7 24 3-26 7-31 (37)
219 1kil_E Complexin I snare-compl 54.0 14 0.00049 25.4 3.6 33 226-258 11-44 (49)
220 2qho_B E3 ubiquitin-protein li 54.0 41 0.0014 23.3 6.0 45 111-156 6-52 (53)
221 2epv_A Zinc finger protein 268 53.9 11 0.00036 23.1 2.9 24 3-26 10-33 (44)
222 2j7j_A Transcription factor II 53.8 4.9 0.00017 27.8 1.4 37 3-51 29-70 (85)
223 2eow_A Zinc finger protein 347 53.8 11 0.00039 23.0 3.1 28 2-31 9-36 (46)
224 1v92_A NSFL1 cofactor P47; 3-h 53.5 17 0.0006 23.5 4.0 38 116-154 7-45 (46)
225 1rim_A E6APC2 peptide; E6-bind 53.2 8.9 0.00031 22.1 2.3 21 6-26 3-23 (33)
226 2d9k_A FLN29 gene product; zin 52.8 14 0.00047 26.3 3.7 38 3-51 15-52 (75)
227 2emj_A Zinc finger protein 28 52.2 13 0.00043 22.9 3.1 28 2-31 9-36 (46)
228 2em4_A Zinc finger protein 28 52.1 13 0.00043 22.9 3.1 28 2-31 9-36 (46)
229 2ytp_A Zinc finger protein 484 52.1 12 0.00041 23.0 2.9 28 2-31 9-36 (46)
230 2el5_A Zinc finger protein 268 52.0 12 0.00041 22.4 2.9 28 2-31 7-34 (42)
231 2emi_A Zinc finger protein 484 51.9 12 0.00041 23.0 2.9 28 2-31 9-36 (46)
232 2yte_A Zinc finger protein 473 51.4 12 0.00041 22.3 2.8 25 3-27 8-32 (42)
233 2yrj_A Zinc finger protein 473 51.3 13 0.00043 22.8 2.9 28 2-31 9-36 (46)
234 3mhs_A Ubiquitin carboxyl-term 51.2 5.3 0.00018 38.1 1.6 43 6-50 63-106 (476)
235 2epa_A Krueppel-like factor 10 51.2 10 0.00035 25.7 2.7 41 3-52 15-59 (72)
236 2yto_A Zinc finger protein 484 51.0 14 0.00047 22.7 3.1 28 2-31 9-36 (46)
237 1tf6_A Protein (transcription 50.9 9.5 0.00032 31.0 2.9 17 9-25 48-64 (190)
238 2ept_A Zinc finger protein 32; 50.7 12 0.00042 22.3 2.8 24 3-26 8-31 (41)
239 2gli_A Protein (five-finger GL 50.5 4.2 0.00014 31.8 0.6 50 4-62 66-119 (155)
240 2dam_A ETEA protein; KIAA0887, 50.3 35 0.0012 24.5 5.5 42 114-156 18-61 (67)
241 2ytf_A Zinc finger protein 268 50.3 14 0.00048 22.5 3.1 28 2-31 9-36 (46)
242 2em3_A Zinc finger protein 28 50.2 14 0.00047 22.6 3.0 28 2-31 9-36 (46)
243 2eor_A Zinc finger protein 224 50.2 13 0.00045 22.7 2.9 25 3-27 10-34 (46)
244 2enf_A Zinc finger protein 347 50.0 12 0.00041 23.0 2.7 27 3-31 10-36 (46)
245 2epu_A Zinc finger protein 32; 49.9 11 0.00039 23.0 2.6 27 3-31 10-36 (45)
246 2k2d_A Ring finger and CHY zin 49.8 8 0.00027 29.0 2.1 28 5-51 37-64 (79)
247 2en7_A Zinc finger protein 268 49.7 11 0.00036 22.8 2.4 24 3-26 10-33 (44)
248 2en2_A B-cell lymphoma 6 prote 49.6 13 0.00043 22.3 2.7 25 2-26 8-32 (42)
249 1yui_A GAGA-factor; complex (D 49.6 14 0.00047 23.8 3.0 24 3-26 22-45 (54)
250 2yts_A Zinc finger protein 484 49.5 13 0.00043 22.7 2.7 28 2-31 9-36 (46)
251 2eq1_A Zinc finger protein 347 49.4 11 0.00039 23.0 2.5 28 2-31 9-36 (46)
252 2emg_A Zinc finger protein 484 49.2 12 0.00042 22.9 2.6 27 3-31 10-36 (46)
253 1x6h_A Transcriptional repress 48.9 22 0.00075 24.4 4.3 39 4-51 46-84 (86)
254 2eos_A B-cell lymphoma 6 prote 48.7 13 0.00043 22.3 2.6 24 3-26 9-32 (42)
255 2ep1_A Zinc finger protein 484 48.6 12 0.0004 22.9 2.4 28 2-31 9-36 (46)
256 2eof_A Zinc finger protein 268 48.4 15 0.0005 22.1 2.9 25 3-27 10-34 (44)
257 2eq3_A Zinc finger protein 347 48.2 11 0.00038 23.0 2.3 28 2-31 9-36 (46)
258 2en9_A Zinc finger protein 28 48.0 14 0.00049 22.6 2.8 27 3-31 10-36 (46)
259 2emb_A Zinc finger protein 473 47.9 13 0.00045 22.5 2.6 27 3-31 10-36 (44)
260 2m0e_A Zinc finger and BTB dom 47.8 9.5 0.00033 20.3 1.7 21 6-26 3-23 (29)
261 2eoj_A Zinc finger protein 268 47.4 12 0.00041 22.6 2.4 28 2-31 9-36 (44)
262 2em6_A Zinc finger protein 224 47.4 14 0.00048 22.7 2.7 27 3-31 10-36 (46)
263 2yu5_A Zinc finger protein 473 46.7 14 0.00049 22.3 2.6 25 3-27 10-34 (44)
264 2eoz_A Zinc finger protein 473 46.6 14 0.00049 22.6 2.7 28 2-31 9-36 (46)
265 1tf6_A Protein (transcription 46.4 13 0.00045 30.1 3.1 21 6-26 73-95 (190)
266 2lvu_A Zinc finger and BTB dom 52.1 4.2 0.00014 21.7 0.0 20 6-25 3-22 (26)
267 2lv2_A Insulinoma-associated p 46.0 16 0.00055 27.0 3.3 30 2-32 53-82 (85)
268 1p3q_Q VPS9P, vacuolar protein 45.8 6.7 0.00023 27.7 1.0 36 115-152 13-51 (54)
269 2eou_A Zinc finger protein 473 45.8 15 0.00052 22.3 2.7 25 3-27 10-34 (44)
270 2yrm_A B-cell lymphoma 6 prote 45.8 17 0.00059 22.0 2.9 25 3-27 8-32 (43)
271 2eon_A ZFP-95, zinc finger pro 45.7 14 0.00047 22.8 2.5 27 3-31 10-36 (46)
272 2g45_A Ubiquitin carboxyl-term 45.5 6.9 0.00023 32.0 1.2 45 6-50 47-103 (129)
273 2uzg_A Ubiquitin carboxyl-term 45.5 7.6 0.00026 30.0 1.4 43 6-50 39-86 (97)
274 2eoy_A Zinc finger protein 473 45.5 15 0.0005 22.6 2.6 27 3-31 10-36 (46)
275 2eoh_A Zinc finger protein 28 45.4 16 0.00054 22.4 2.7 27 3-31 10-36 (46)
276 2eq2_A Zinc finger protein 347 45.3 12 0.00042 22.9 2.1 27 3-31 10-36 (46)
277 1ubd_C Protein (YY1 zinc finge 44.9 20 0.00068 26.7 3.7 21 6-26 35-55 (124)
278 2enh_A Zinc finger protein 28 44.9 12 0.00041 23.0 2.1 27 3-31 10-36 (46)
279 2yth_A Zinc finger protein 224 44.6 15 0.00052 22.5 2.6 27 3-31 10-36 (46)
280 2eom_A ZFP-95, zinc finger pro 44.5 16 0.00056 22.4 2.7 27 3-31 10-36 (46)
281 2lvr_A Zinc finger and BTB dom 50.3 4.7 0.00016 22.0 0.0 22 5-26 3-24 (30)
282 2yti_A Zinc finger protein 347 44.1 13 0.00045 22.7 2.2 27 3-31 10-36 (46)
283 1pft_A TFIIB, PFTFIIBN; N-term 43.5 6.3 0.00022 26.4 0.6 13 1-13 1-13 (50)
284 2en3_A ZFP-95, zinc finger pro 43.4 17 0.00059 22.2 2.7 26 2-27 9-34 (46)
285 2jp9_A Wilms tumor 1; DNA bind 43.3 12 0.00042 27.5 2.2 42 2-52 3-48 (119)
286 2lvt_A Zinc finger and BTB dom 49.2 5 0.00017 21.9 0.0 20 6-25 3-22 (29)
287 2ytb_A Zinc finger protein 32; 42.1 11 0.00037 22.5 1.5 22 4-25 10-31 (42)
288 2km4_A Regulator of TY1 transp 41.2 15 0.00051 29.9 2.6 34 124-157 1-36 (142)
289 4gzn_C ZFP-57, zinc finger pro 40.2 15 0.00052 25.3 2.1 29 2-32 29-57 (60)
290 2emz_A ZFP-95, zinc finger pro 40.1 21 0.00071 21.9 2.6 25 3-27 10-34 (46)
291 1x6f_A Zinc finger protein 462 38.7 40 0.0014 24.7 4.5 40 3-51 23-62 (88)
292 2di0_A Activating signal coint 38.6 82 0.0028 23.2 6.0 37 116-153 15-53 (71)
293 2xzm_5 Ribosomal protein S26E 37.5 13 0.00046 30.1 1.7 46 4-49 19-80 (119)
294 2kfq_A FP1; protein, de novo p 37.5 5.2 0.00018 22.9 -0.6 9 43-51 3-11 (32)
295 2d9h_A Zinc finger protein 692 37.5 31 0.0011 23.5 3.5 30 3-33 36-65 (78)
296 2eox_A Zinc finger protein 473 37.5 13 0.00045 22.5 1.3 25 3-27 10-34 (44)
297 2drp_A Protein (tramtrack DNA- 36.9 27 0.00091 22.9 3.0 26 2-27 37-62 (66)
298 1cuk_A RUVA protein; DNA repai 36.5 35 0.0012 29.6 4.4 32 114-145 160-193 (203)
299 4ets_A Ferric uptake regulatio 35.8 17 0.00057 30.2 2.1 45 5-51 107-156 (162)
300 2lce_A B-cell lymphoma 6 prote 35.4 28 0.00096 23.5 3.0 25 3-27 43-67 (74)
301 2ztd_A Holliday junction ATP-d 35.3 51 0.0017 28.9 5.3 24 115-138 165-188 (212)
302 2ghf_A ZHX1, zinc fingers and 34.7 26 0.0009 26.7 2.9 41 3-51 48-88 (102)
303 2rpc_A Zinc finger protein ZIC 34.0 24 0.00084 27.3 2.7 21 6-26 63-83 (155)
304 2ct1_A Transcriptional repress 33.2 35 0.0012 23.2 3.2 27 4-31 44-70 (77)
305 2vhf_A Ubiquitin carboxyl-term 32.8 14 0.00049 35.4 1.3 38 61-100 157-197 (374)
306 3eyy_A Putative iron uptake re 32.6 16 0.00054 29.6 1.4 45 5-51 90-139 (145)
307 2ab3_A ZNF29; zinc finger prot 31.7 28 0.00096 18.3 2.0 22 5-26 2-25 (29)
308 2k4x_A 30S ribosomal protein S 31.2 18 0.0006 25.3 1.3 9 42-50 36-44 (55)
309 2i5o_A DNA polymerase ETA; zin 30.8 27 0.00092 22.8 2.0 23 3-26 7-29 (39)
310 2dzl_A Protein FAM100B; UBA-li 30.6 62 0.0021 23.2 4.2 39 116-155 19-58 (66)
311 2o03_A Probable zinc uptake re 30.5 33 0.0011 27.0 3.0 44 4-49 82-130 (131)
312 3qt1_I DNA-directed RNA polyme 29.4 19 0.00066 29.4 1.4 13 3-15 44-56 (133)
313 3mwm_A ZUR, putative metal upt 28.4 19 0.00065 28.9 1.2 45 5-51 87-136 (139)
314 4efa_E V-type proton ATPase su 28.3 2.8E+02 0.0097 23.7 14.0 20 176-195 6-25 (233)
315 2i50_A Ubiquitin carboxyl-term 27.7 19 0.00065 29.1 1.1 43 6-50 55-104 (126)
316 3h0g_L DNA-directed RNA polyme 27.6 19 0.00064 26.1 0.9 28 24-51 3-30 (63)
317 2qkd_A Zinc finger protein ZPR 26.8 14 0.00047 35.8 0.0 40 4-51 219-258 (404)
318 1bhi_A CRE-BP1, ATF-2; CRE bin 26.8 59 0.002 18.6 3.0 25 2-26 3-29 (38)
319 2epp_A POZ-, at HOOK-, and zin 26.6 46 0.0016 23.5 2.8 27 4-32 12-38 (66)
320 2ctd_A Zinc finger protein 512 26.6 43 0.0015 24.6 2.8 27 4-31 61-87 (96)
321 2jvx_A NF-kappa-B essential mo 26.5 57 0.0019 19.8 2.8 24 5-28 3-26 (28)
322 3u5c_a 40S ribosomal protein S 26.3 20 0.0007 29.1 1.0 45 4-48 19-77 (119)
323 2dmi_A Teashirt homolog 3; zin 26.3 54 0.0018 23.9 3.4 50 6-64 51-102 (115)
324 1sp2_A SP1F2; zinc finger, tra 26.2 44 0.0015 18.1 2.3 21 6-26 3-25 (31)
325 2xig_A Ferric uptake regulatio 25.3 18 0.00062 29.4 0.5 45 4-50 98-147 (150)
326 1lv3_A Hypothetical protein YA 24.8 23 0.00078 26.0 0.9 10 42-51 9-18 (68)
327 1zfd_A SWI5; DNA binding motif 23.7 54 0.0018 17.8 2.3 22 5-26 3-26 (32)
328 1l4a_E Synaphin A; snare, snar 23.5 44 0.0015 25.0 2.3 31 227-257 19-50 (79)
329 1va1_A Transcription factor SP 23.4 73 0.0025 18.2 3.0 25 2-26 5-31 (37)
330 4ayc_A E3 ubiquitin-protein li 22.4 14 0.00048 29.4 -0.7 40 6-51 54-96 (138)
331 2igp_A Retinoblastoma-associat 21.8 57 0.0019 26.0 2.8 41 112-152 70-114 (120)
332 3nr7_A DNA-binding protein H-N 21.5 1.3E+02 0.0045 22.7 4.7 11 249-259 60-70 (86)
333 2k5r_A Uncharacterized protein 20.7 43 0.0015 26.1 1.8 70 6-75 9-91 (97)
334 1vq8_Z 50S ribosomal protein L 20.3 29 0.001 26.2 0.7 11 41-51 26-36 (83)
No 1
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.86 E-value=6.1e-23 Score=215.30 Aligned_cols=121 Identities=27% Similarity=0.478 Sum_probs=102.7
Q ss_pred hhc-cccCCCCCCCCCccccccccccccccccccchhhccccccccc---Cccc---cCCccccccCC--CCC--CCCcc
Q 022703 40 VLN-LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDM--SGS--QPEEM 108 (293)
Q Consensus 40 i~~-~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~---p~K~---~~~~~~lDl~~--g~~--~~Ee~ 108 (293)
.++ |+|+.|+.+ +.|+|++.|.+||++|+||++||.++. +.|+ |.+|..|||+. +.+ ++|+.
T Consensus 560 ~Le~y~C~~C~~k-------~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~~~~~q~~E~~ 632 (854)
T 3ihp_A 560 QVDDFWSTALQAK-------SVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEE 632 (854)
T ss_dssp EEEEEEETTTTEE-------EEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGBCCCSCTTCCB
T ss_pred EeeeeeccccCCc-------ceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhccCCCCCCcee
Confidence 344 999999987 789999999999999999999999963 8898 77899999987 333 66552
Q ss_pred --------------cccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 022703 109 --------------VEPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (293)
Q Consensus 109 --------------~~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~didep~~~~~ 167 (293)
..+.+|+++|++|++|||+.++|.+||+.|||.+++.||+|||+||+|+||++|+..+.
T Consensus 633 lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~ 705 (854)
T 3ihp_A 633 LPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPG 705 (854)
T ss_dssp CCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC-
T ss_pred cccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccc
Confidence 13457999999999999999999999999999999999999999999999999998764
No 2
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.76 E-value=5.9e-19 Score=131.04 Aligned_cols=58 Identities=40% Similarity=0.620 Sum_probs=53.7
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~didep~~~~~~ 168 (293)
..+|++.|.+|++|||++++|.+||++|||.+++.||+|||+|++|||||+|+..|.+
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d~d~p~~~~~~ 63 (64)
T 2crn_A 6 SGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCNDPSLDDPISGPSS 63 (64)
T ss_dssp CCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTTSCCSCCCCSC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCccccCCCCCCCC
Confidence 3467888999999999999999999999999999999999999999999999987754
No 3
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.70 E-value=2.8e-17 Score=128.04 Aligned_cols=59 Identities=37% Similarity=0.638 Sum_probs=54.7
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 022703 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (293)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~didep~~~~~~ 168 (293)
.+.+|++.|.+|++|||++++|++||++|+|.|++.|++|||+|++|++||+|+..+++
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d~d~p~~~~~~ 83 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDAPISGPSS 83 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSTTTSCSSSCCC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccccccCCCCCCC
Confidence 35679999999999999999999999999988999999999999999999999987653
No 4
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=124.74 Aligned_cols=59 Identities=37% Similarity=0.738 Sum_probs=55.1
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 022703 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (293)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~didep~~~~~~ 168 (293)
.+.+|++.|.+|++|||++.+|++||++|+|.+++.|++|||+|++|+++|+|+.+|..
T Consensus 5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~d~d~p~~~~~~ 63 (74)
T 2dag_A 5 SSGLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGS 63 (74)
T ss_dssp CCSSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTSTTSSSCSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcccccccCCCCC
Confidence 45689999999999999999999999999987899999999999999999999988754
No 5
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.65 E-value=1.3e-16 Score=118.19 Aligned_cols=54 Identities=44% Similarity=0.788 Sum_probs=50.9
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPM 164 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~didep~~ 164 (293)
..+|++.|.+|++|||++.+|++||++|||.|++.|++|||+|++|+++|+|+.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~d~d~pl~ 59 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLS 59 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCSCTTCCSS
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCcccccccC
Confidence 457889999999999999999999999987799999999999999999999986
No 6
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3e-16 Score=122.04 Aligned_cols=57 Identities=42% Similarity=0.697 Sum_probs=52.9
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPVS 168 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~didep~~~~~~ 168 (293)
+.+|++.|.+|++|||++.+|.+||++|+| |++.|++|||+|++|+++|+|+..|++
T Consensus 26 ~~~~e~~i~~L~~MGF~~~~a~~AL~~t~~-nve~A~ewL~~~~~d~d~d~pl~~~~~ 82 (83)
T 2dai_A 26 ERVDEAALRQLTEMGFPENRATKALQLNHM-SVPQAMEWLIEHAEDPTIDTPLSGPSS 82 (83)
T ss_dssp SSCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHGGGCSTTCCCCCCSSC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccccCCCCCCC
Confidence 568999999999999999999999999965 999999999999999999999987753
No 7
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=116.46 Aligned_cols=56 Identities=27% Similarity=0.475 Sum_probs=53.0
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~didep~~~~~ 167 (293)
+.+++..|.+|++|||++.+|.+||++|+| +++.|++|||+|++|+|+|+|+..|.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~~d~d~d~p~~~p~ 61 (63)
T 2dak_A 6 SGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDLDAEAAMSGPS 61 (63)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHHHSCCSSSCCCCSC
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCcccccCCCCCC
Confidence 468999999999999999999999999998 89999999999999999999998775
No 8
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=120.62 Aligned_cols=56 Identities=32% Similarity=0.701 Sum_probs=52.3
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 022703 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (293)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~didep~~~~~ 167 (293)
+||+..|.+|++|||+..+|.+||++|||.+++.||+||+.|++|+++++|+..+.
T Consensus 1 ~~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~ 56 (126)
T 2lbc_A 1 DIDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPG 56 (126)
T ss_dssp CCCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccc
Confidence 47899999999999999999999999999999999999999999999999986653
No 9
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.50 E-value=1e-14 Score=108.14 Aligned_cols=46 Identities=35% Similarity=0.603 Sum_probs=44.1
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 022703 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (293)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~d 158 (293)
++++.|.+|++|||++++|.+||++|+|.|++.|++|||+|++|||
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~d~d 63 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSGPSS 63 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCSCCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC
Confidence 7888999999999999999999999998899999999999999986
No 10
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.44 E-value=6.2e-14 Score=102.69 Aligned_cols=42 Identities=19% Similarity=0.488 Sum_probs=39.5
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 022703 114 DKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (293)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD 156 (293)
.++.|++|++|||+.++|.+||++||| |+|+|+||||+|+|-
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 467899999999999999999999998 999999999999875
No 11
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.41 E-value=5.3e-13 Score=98.61 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=49.7
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCCCCCCCC
Q 022703 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDEMPMVPV 167 (293)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~didep~~~~~ 167 (293)
.++++.|.+|++|||++.+|.+||..|+| |++.|++|||+|.++.....|+..++
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~~~~~~~~p~~~~~ 61 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSNKQKPVMGPPSGPS 61 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHSSCCCCCSSCCCSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCCcccCCCCCCCC
Confidence 47899999999999999999999999998 99999999999999988877765543
No 12
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.33 E-value=1.5e-12 Score=98.73 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=44.9
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 022703 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (293)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~d 158 (293)
.+.+++..|.+|++|||++.+|++||+.|+| |++.|++|||+|++|+.
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~~d~~ 72 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNSGPSS 72 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSCCSSC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCCCCCC
Confidence 4568999999999999999999999999998 99999999999999873
No 13
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=91.16 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=40.1
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 022703 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (293)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~ 154 (293)
.+.++++.|.+|++|||++.+|.+||+.|| |++.|++|||+|+
T Consensus 5 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~h~ 47 (47)
T 2ekk_A 5 SSGVNQQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLTHP 47 (47)
T ss_dssp CCSSCHHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHcCC
Confidence 367899999999999999999999999995 7999999999985
No 14
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.30 E-value=5.3e-13 Score=93.19 Aligned_cols=45 Identities=27% Similarity=0.460 Sum_probs=41.6
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCC
Q 022703 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPD 158 (293)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~d 158 (293)
-+++.|++|++|||++..|.+||.++|+ |++.|++|||+|++|++
T Consensus 3 ~e~eaI~rL~~mGF~~~~a~~Al~a~~~-n~e~A~~~Lf~~~~d~~ 47 (47)
T 1dv0_A 3 QEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDDE 47 (47)
T ss_dssp CCHHHHTTTTTTTCCHHHHHHHHTTTTS-CHHHHHHHTTSCCCCCC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCcCCCC
Confidence 3678899999999999999999999985 99999999999999973
No 15
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.27 E-value=8e-12 Score=97.45 Aligned_cols=50 Identities=32% Similarity=0.447 Sum_probs=43.9
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCCCCC
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDPDIDE 161 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~dide 161 (293)
..+|+..|.+|++|||++.+|++||+.+ |.+++.|++|||+|++|+|...
T Consensus 18 ~~~n~~~I~qL~~MGF~~~~a~~AL~~~-n~n~e~A~ewL~~h~~D~D~~~ 67 (85)
T 2dkl_A 18 AWIMSRLIKQLTDMGFPREPAEEALKSN-NMNLDQAMSALLEKKVDVDKRG 67 (85)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHT-TSCHHHHHHHHHTTSCCSSCCC
T ss_pred cccCHHHHHHHHHcCCCHHHHHHHHHHc-CCCHHHHHHHHHHCcCCccccc
Confidence 4578999999999999999999999555 5599999999999999987544
No 16
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.26 E-value=3.5e-12 Score=86.84 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=37.8
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (293)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h 153 (293)
++++.|.+|++|||+++.|.+||..++| |++.|++|||+|
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~~ 42 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHcC
Confidence 5678999999999999999999999987 999999999987
No 17
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.25 E-value=2e-12 Score=106.51 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=43.5
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc--CCCCCCCC
Q 022703 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE--NDPDIDEM 162 (293)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~--dD~didep 162 (293)
..+.++|.+|++||||.++|.+||+.||| |++.||+|||.|+ +|+++|+|
T Consensus 6 ~~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~ 57 (118)
T 4ae4_A 6 PSERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPL 57 (118)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChh
Confidence 34678999999999999999999999999 9999999999998 35555443
No 18
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.24 E-value=1.5e-11 Score=95.56 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=43.5
Q ss_pred ccccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 022703 110 EPEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (293)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~ 157 (293)
...++++.|.+|++|||++.+|++||..|+| +++.|++|||+|+++.
T Consensus 25 ~~~~~ee~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~~~i 71 (83)
T 1veg_A 25 QASPSQESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHGGSL 71 (83)
T ss_dssp SCCCCHHHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHTSSC
T ss_pred cCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCC
Confidence 4557899999999999999999999999998 8999999999999974
No 19
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.21 E-value=1.1e-11 Score=88.38 Aligned_cols=42 Identities=31% Similarity=0.530 Sum_probs=40.0
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~ 152 (293)
+++|..++++|++|||++++|.+||..|||.+++.||+||..
T Consensus 6 ~~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 6 SGVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp CSCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 478999999999999999999999999999999999999975
No 20
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=100.67 Aligned_cols=48 Identities=31% Similarity=0.617 Sum_probs=45.0
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC-CCCCC
Q 022703 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN-DPDID 160 (293)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~d-D~did 160 (293)
.+++..|.+|++|||++++|.+||..||| +++.|++|||+|++ |+|+|
T Consensus 76 ~~~e~~v~~L~~MGF~~~~a~~AL~~~~~-~~e~A~e~L~~~~~~d~~~d 124 (126)
T 2lbc_A 76 QPPEEIVAIITSMGFQRNQAIQALRATNN-NLERALDWIFSHPEFEEDSD 124 (126)
T ss_dssp CCCHHHHHHHHHHTSCHHHHHHHHHHHTS-CHHHHHHHHHTCCSSCCCCC
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCCccCCC
Confidence 47999999999999999999999999987 99999999999999 87765
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.13 E-value=4.1e-11 Score=84.12 Aligned_cols=41 Identities=29% Similarity=0.393 Sum_probs=38.2
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (293)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h 153 (293)
..+++.|.+|++|||+++.|.+||..|+| |++.|++|||+|
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 34678899999999999999999999998 999999999997
No 22
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.04 E-value=1.8e-10 Score=81.81 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=37.3
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 022703 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (293)
Q Consensus 114 ~~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~WL~~h~ 154 (293)
-+..|.+|++||| ++.++.+||..|+| |++.|++|||+|+
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~~~ 52 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALIATGG-DINAAIERLLGSS 52 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhCc
Confidence 4678999999999 99999999999998 9999999999985
No 23
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.02 E-value=4e-10 Score=85.54 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=41.2
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD 156 (293)
....++.|.+|++|||+++.|..||..++| |++.|++|||.|.+.
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQSGP 70 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCSCS
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCCC
Confidence 456789999999999999999999999998 999999999998764
No 24
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.01 E-value=3.6e-10 Score=80.49 Aligned_cols=39 Identities=26% Similarity=0.488 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 022703 115 KELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHE 154 (293)
Q Consensus 115 ~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~WL~~h~ 154 (293)
+..|.+|++||| ++.++.+||..|+| |++.|++|||+|.
T Consensus 12 ~~~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~~ 51 (53)
T 2knz_A 12 QQQLEQLNSMGFINREANLQALIATGG-DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHcC
Confidence 456999999999 99999999999998 9999999999986
No 25
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=98.92 E-value=1.1e-09 Score=72.64 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 022703 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVV 151 (293)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~ 151 (293)
++.|.+|++|||+++.|.+||..|+| |++.|++|||
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence 56899999999999999999999987 9999999995
No 26
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.83 E-value=4.9e-09 Score=75.08 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=37.3
Q ss_pred CHHHHHHHHhCCCCHH-HHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 022703 114 DKELLKELEAMGFPVA-RATRALHYSGNANVEAAVNWVVEHENDP 157 (293)
Q Consensus 114 ~~~~l~~L~~MGF~~~-~a~kAL~~tgn~~~E~A~~WL~~h~dD~ 157 (293)
-+..|.+|++|||+.. .+.+||..|++ |++.|++|||+|++..
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSSGPS 52 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCcC
Confidence 3678999999999664 57999999987 9999999999998653
No 27
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=98.81 E-value=4.9e-09 Score=72.71 Aligned_cols=39 Identities=31% Similarity=0.471 Sum_probs=34.7
Q ss_pred CHHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEH 153 (293)
Q Consensus 114 ~~~~l~~L~~MGF~-~~~a~kAL~~tgn~~~E~A~~WL~~h 153 (293)
-+..|.+|++|||+ +..+.+||..|+| |++.|++|||+|
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~~ 46 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNG 46 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence 35679999999995 6778999999998 999999999986
No 28
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.81 E-value=4.1e-09 Score=78.74 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCHH-HHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 022703 115 KELLKELEAMGFPVA-RATRALHYSGNANVEAAVNWVVEHENDP 157 (293)
Q Consensus 115 ~~~l~~L~~MGF~~~-~a~kAL~~tgn~~~E~A~~WL~~h~dD~ 157 (293)
+..|.+|.+|||... ++.+||..|+| |++.|++|||+|.++.
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 557999999999655 55999999988 9999999999998875
No 29
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.77 E-value=7.3e-09 Score=78.78 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=38.1
Q ss_pred CHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 022703 114 DKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHENDP 157 (293)
Q Consensus 114 ~~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~ 157 (293)
-+..|.+|++||| ++..+.+||..++| |++.|++|||.|++.+
T Consensus 29 ye~qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 29 YQQELEELKALGFANRDANLQALVATDG-DIHAAIEMLLGASGPS 72 (74)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCCCCC
Confidence 3567999999999 57888999999988 9999999999997654
No 30
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=98.74 E-value=1e-08 Score=74.46 Aligned_cols=40 Identities=30% Similarity=0.482 Sum_probs=35.8
Q ss_pred CHHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 022703 114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEHE 154 (293)
Q Consensus 114 ~~~~l~~L~~MGF~-~~~a~kAL~~tgn~~~E~A~~WL~~h~ 154 (293)
-+..|.+|++|||+ +..+.+||..|+| |++.|++|||+|+
T Consensus 17 ~~~qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~~~ 57 (58)
T 1wr1_B 17 YEHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLNGD 57 (58)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence 35679999999995 7788999999988 9999999999985
No 31
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.61 E-value=3.2e-08 Score=81.31 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=39.0
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~ 154 (293)
..+++..+.+|++|||+.+.|++||..|+| +++.|++|||...
T Consensus 73 ~~~~~~~v~~L~eMGF~~~~a~~AL~~~~n-d~erAlewL~~~~ 115 (118)
T 4ae4_A 73 MMEFLQLMSKFKEMGFELKDIKEVLLLHNN-DQDNALEDLMARA 115 (118)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHHhc
Confidence 345778999999999999999999999998 9999999999753
No 32
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.49 E-value=3.6e-08 Score=94.88 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=42.7
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~ 157 (293)
...+++.|.+|++|||++++|.+||++++| |++.|++|||+|++|.
T Consensus 165 g~~~~~~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~gip~~ 210 (368)
T 1oqy_A 165 GSEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGIPGS 210 (368)
T ss_dssp TTTHHHHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTSSTTC
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 345888999999999999999999999999 9999999999998875
No 33
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.37 E-value=6.5e-07 Score=63.43 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=35.9
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (293)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h 153 (293)
.-++.+.+|++|||+++.+.+||..++| |++.|.+.|.+-
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLlef 49 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILREF 49 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence 3448999999999999999999999988 999999999763
No 34
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.31 E-value=7.3e-07 Score=72.26 Aligned_cols=41 Identities=24% Similarity=0.367 Sum_probs=36.6
Q ss_pred CHHHHHHHHhCCCC-HHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 022703 114 DKELLKELEAMGFP-VARATRALHYSGNANVEAAVNWVVEHEN 155 (293)
Q Consensus 114 ~~~~l~~L~~MGF~-~~~a~kAL~~tgn~~~E~A~~WL~~h~d 155 (293)
-+..|.+|.+|||+ +.++.+||..+++ |++.||+|||++++
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHhcCC
Confidence 36789999999995 5899999999987 99999999999864
No 35
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=98.27 E-value=1.1e-07 Score=87.25 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=44.9
Q ss_pred ccccCCCCCCCCCccccccccccccccccccchhhccccccccc--Cccc---cCCc-cccccCC
Q 022703 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM 100 (293)
Q Consensus 42 ~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~--p~K~---~~~~-~~lDl~~ 100 (293)
.|.|+.|+++ +.++|+..|.++|++|+|+++||.... +.|+ +.+| +.|||+.
T Consensus 226 ~~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~ 283 (355)
T 3i3t_A 226 APVCDRCRQK-------TRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD 283 (355)
T ss_dssp CCCCSSSCCC-------CCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGG
T ss_pred CeeCCCCCCc-------cceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchh
Confidence 3999999997 789999999999999999999999885 6777 5566 5688875
No 36
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.25 E-value=9.5e-07 Score=63.17 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=39.0
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~d 155 (293)
+.+.+..+.+|++|||+++.+.+||..+.| |++.|.|.|.+-.-
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~ 47 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVS 47 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCC
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHc
Confidence 345677899999999999999999999988 99999999988543
No 37
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.22 E-value=2.9e-06 Score=60.36 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=37.9
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 022703 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (293)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~d 155 (293)
++-+..+.+|++|||+++.+.+||..++| |++.|.+.|.+..-
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG 49 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence 34557799999999999999999999988 99999999988643
No 38
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.20 E-value=4.1e-07 Score=87.57 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=41.9
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 022703 112 EVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (293)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~ 157 (293)
..+.+.|..|++|||++..|.+||+.+++ |++.|++|||+|++|.
T Consensus 323 ~ee~eaI~rL~~mGF~~~~a~~al~a~~~-n~e~A~~~L~~~~~d~ 367 (368)
T 1oqy_A 323 PQEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQNFDD 367 (368)
T ss_dssp TTTHHHHHHHHHHTCCSHHHHHHTSSSSS-CSSHHHHHHHHHHCCC
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhhCcCcC
Confidence 45889999999999999999999999987 8999999999999985
No 39
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=98.16 E-value=5.9e-07 Score=84.51 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=48.9
Q ss_pred CCCcchhhhhccccCCCCCCCCCccccccccccccccccccchhhccccccccc----Cccc---cCCccccccCC
Q 022703 32 NFSESTEAVLNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (293)
Q Consensus 32 ~F~e~~d~i~~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~----p~K~---~~~~~~lDl~~ 100 (293)
+|.|. +.|.|+.||.. ..++|+..|.++|++|+||++||.++. ..|+ |.+|..|||+.
T Consensus 203 ~~~e~----l~~~c~~c~~~-------~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~ 267 (404)
T 2ayn_A 203 RLQEE----ITKQSPTLQRN-------ALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYE 267 (404)
T ss_dssp TTEEC----CCCEETTTTEE-------CCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGG
T ss_pred hcccc----eeecchhhCCc-------cceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhH
Confidence 45544 45899999986 678999999999999999999999984 5777 66788999984
No 40
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=98.12 E-value=4.2e-07 Score=84.92 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=45.7
Q ss_pred hccccCCCCCCCCCccccccccccccccccccchhhccccccccc--Cccc---cCCcc-ccccCC
Q 022703 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSEE-AIDVDM 100 (293)
Q Consensus 41 ~~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~--p~K~---~~~~~-~lDl~~ 100 (293)
..|.|+.|+++ +.|+|++.|.++|++|+||++||.+.. +.|+ |.+|. .|||+.
T Consensus 230 ~~~~C~~C~~~-------~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~ 288 (367)
T 2y6e_A 230 DPWYCPNCKKH-------QQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSE 288 (367)
T ss_dssp CCEEETTTTEE-------ECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGG
T ss_pred CCccCCCCCCC-------ceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhh
Confidence 34999999986 789999999999999999999999985 6777 55775 699875
No 41
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=98.11 E-value=9.4e-08 Score=90.89 Aligned_cols=53 Identities=6% Similarity=-0.099 Sum_probs=38.5
Q ss_pred hccccCCCCCCCCCccccccccccccccccccchhhccccccccc----Cccc---cCCccccccCC
Q 022703 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (293)
Q Consensus 41 ~~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~----p~K~---~~~~~~lDl~~ 100 (293)
+.|.|+.||.. ..++|++.|.++|++|+|+++||.++. +.|+ |.+|..|||+.
T Consensus 200 i~~~c~~c~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~ 259 (415)
T 1vjv_A 200 IEKRSDLTGAN-------SIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVAD 259 (415)
T ss_dssp ---------CC-------CCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGG
T ss_pred hhhcccccCCc-------ccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHH
Confidence 45899999987 679999999999999999999999984 4777 66788999983
No 42
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.03 E-value=1e-05 Score=55.83 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 022703 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (293)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~ 154 (293)
+..+.+|++|||+.+.+.+||-.+.| |++.|.|-|.+..
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~ 43 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFA 43 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhc
Confidence 46789999999999999999999988 9999999998754
No 43
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=97.98 E-value=3.7e-07 Score=88.38 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=45.5
Q ss_pred cccCCCCCCCCCccccccccccccccccccchhhccccccccc---Cccc---cCCccccccCC
Q 022703 43 LVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV---PKAT---ADSEEAIDVDM 100 (293)
Q Consensus 43 ~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~---p~K~---~~~~~~lDl~~ 100 (293)
|.|+.|+.. ..++|+..|.++|++|+|+++||.+.. +.|+ +.+|..|||+.
T Consensus 339 ~~C~~C~~~-------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~ 395 (476)
T 3mhs_A 339 YHCGECNST-------QDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKN 395 (476)
T ss_dssp CEETTTTEE-------CCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGG
T ss_pred CcCCccCCc-------ccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechh
Confidence 999999986 789999999999999999999999763 7787 66888999986
No 44
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=97.97 E-value=2e-06 Score=78.48 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=44.9
Q ss_pred hccccCCCCCCCCCccccccccccccccccccchhhccccccccc--Cccc---cCCc-cccccCC
Q 022703 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM 100 (293)
Q Consensus 41 ~~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~--p~K~---~~~~-~~lDl~~ 100 (293)
..|.|+.|+.. ..+.|+..|.++|++|+|+++||.... ..|+ +.+| ..|||+.
T Consensus 215 ~~~~C~~C~~~-------~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~ 273 (348)
T 3nhe_A 215 EKPTCCRCRGR-------KRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE 273 (348)
T ss_dssp GCCEETTTTEE-------CCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGG
T ss_pred CceECCCCCCc-------ccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhh
Confidence 34899999986 789999999999999999999999875 6676 5566 5688875
No 45
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=97.96 E-value=1.4e-06 Score=83.07 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=45.0
Q ss_pred hccccCCCCCCCCCccccccccccccccccccchhhccccccccc--Cccc---cCCc-cccccCC
Q 022703 41 LNLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV--PKAT---ADSE-EAIDVDM 100 (293)
Q Consensus 41 ~~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~--p~K~---~~~~-~~lDl~~ 100 (293)
..|.|+.|+.. ..|+|++.|.++|++|+|+++||.++. ..|+ |.+| +.|||+.
T Consensus 267 n~~~C~~C~~~-------~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~ 325 (396)
T 2gfo_A 267 NRFYCSHCRAR-------RDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQ 325 (396)
T ss_dssp TCEEETTTTEE-------ECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGG
T ss_pred cccccCCcccc-------cceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccc
Confidence 34999999986 789999999999999999999999985 5566 5567 5699875
No 46
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.79 E-value=2.6e-05 Score=55.81 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=38.2
Q ss_pred cCHHHHHHHHhCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 022703 113 VDKELLKELEAMGF-PVARATRALHYSGNANVEAAVNWVVEHENDP 157 (293)
Q Consensus 113 ~~~~~l~~L~~MGF-~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~ 157 (293)
.+...|.+|.+||| ...+-.+||..+|+ |++.||++|+...+.+
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSGPS 52 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSSSC
T ss_pred hhHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccCCC
Confidence 45678999999999 88999999998877 8999999999876653
No 47
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=97.78 E-value=7.6e-06 Score=76.53 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=41.3
Q ss_pred ccccCCCCCCCCCccccccccccccccccccchhhccccccccc----Cccc---cCCccccccCC
Q 022703 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (293)
Q Consensus 42 ~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~----p~K~---~~~~~~lDl~~ 100 (293)
.|.|+.|+. ..|+|++.|.++|++|+||++||.++. ..|+ +.+|..|||+.
T Consensus 171 ~~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~ 228 (353)
T 1nb8_A 171 KYDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE 228 (353)
T ss_dssp CEECGGGCE--------ECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGG
T ss_pred cccCCcCcc--------EeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhh
Confidence 489999976 578999999999999999999999874 6777 66788999975
No 48
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.77 E-value=1.4e-05 Score=84.18 Aligned_cols=46 Identities=28% Similarity=0.533 Sum_probs=42.3
Q ss_pred cccCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 022703 111 PEVDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHENDP 157 (293)
Q Consensus 111 ~~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~ 157 (293)
..++++.+++|.+|||+..+|.+||..|+| +++.|++|||+|++|.
T Consensus 717 ~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~-~~eraidwlfs~~d~~ 762 (854)
T 3ihp_A 717 DPPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHIDDL 762 (854)
T ss_dssp --CCHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHhhcC-cHHHHHHhhhcCcccc
Confidence 467999999999999999999999999988 9999999999999875
No 49
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.77 E-value=1.6e-06 Score=65.55 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 022703 144 EAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQEL 190 (293)
Q Consensus 144 E~A~~WL~~h~dD~didep~~~~~~~~~~~~kk~lT~EEk~~k~~el 190 (293)
++||+|||+|++|||||+|+.... +--.+++..+|.+|
T Consensus 2 ~~am~wl~~h~dDpd~d~pl~~~~---------~~~~~~~v~~L~~M 39 (73)
T 1wiv_A 2 SSGSSGLLSHMDDPDIDAPISHQT---------SDIDQSSVDTLLSF 39 (73)
T ss_dssp CCCCCCCSSCCSCSCSSCCSCCSS---------CSSCHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCccCCCCCCC---------CCCCHHHHHHHHHc
Confidence 468999999999999999986521 11235666666555
No 50
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=97.68 E-value=4.2e-05 Score=67.33 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (293)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h 153 (293)
++.|.+|++|||+++.|..||...++ +++.|++|||+|
T Consensus 164 eekV~~l~~MGf~~~~a~~AL~~~~w-d~~~A~e~L~~~ 201 (201)
T 3k9o_A 164 TKKIENLCAMGFDRNAVIVALSSKSW-DVETATELLLSN 201 (201)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 67899999999999999999999987 999999999986
No 51
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.62 E-value=3.7e-05 Score=66.82 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=37.1
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 022703 113 VDKELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (293)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD 156 (293)
.+.+.|..|++|||++..+..||..++. |++.|.+|||+|+.|
T Consensus 129 ee~eaI~rL~~mGF~r~~viqA~~ac~k-nee~Aan~L~~~~~d 171 (171)
T 2qsf_X 129 EDDQAISRLCELGFERDLVIQVYFACDK-NEEAAANILFSDHAD 171 (171)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHTTC---
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhccCC
Confidence 3567899999999999999999999976 999999999998765
No 52
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=97.58 E-value=2.1e-05 Score=77.42 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=44.0
Q ss_pred ccccCCCCCCCCCccccccccccccccccccchhhccccccccc----Cccc---cCCccccccCC
Q 022703 42 NLVCATCGKPCRSKTETDLHRKRTGHTDFVDKTSEAAKPISLEV----PKAT---ADSEEAIDVDM 100 (293)
Q Consensus 42 ~~~C~~Cg~~~~~~~e~~~a~K~t~f~tFP~~Lvv~~~Rf~l~~----p~K~---~~~~~~lDl~~ 100 (293)
.|.|+.|+. ..|.|+..|.++|++|+||++||.++. ..|+ +.+|..|||+.
T Consensus 340 ~~~C~~c~~--------~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~ 397 (522)
T 2f1z_A 340 KYDAGEHGL--------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE 397 (522)
T ss_dssp CBCCGGGCS--------BCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGG
T ss_pred eeecCcCCc--------cceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchh
Confidence 489999986 478999999999999999999999874 5677 66788999975
No 53
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.38 E-value=0.00021 Score=57.44 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=37.0
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 022703 115 KELLKELEAM-GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (293)
Q Consensus 115 ~~~l~~L~~M-GF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD 156 (293)
++.|..|++| ||+++.|+.||..+++ +++.|++.||+...|
T Consensus 40 eekVk~L~EmtG~seeeAr~AL~~~ng-Dl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 40 EEKVKQLIDITGKNQDECVIALHDCNG-DVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCc
Confidence 3568999999 9999999999999987 999999999987654
No 54
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=96.11 E-value=0.0067 Score=55.46 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVEH 153 (293)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h 153 (293)
.+.|..|++|||+++.|..||...++ +++.|++.||++
T Consensus 216 ~~~v~~l~~mgf~~~~~~~al~~~nW-d~~~A~e~L~~~ 253 (253)
T 3e46_A 216 TKKIENLCAAGFDRNAVIVALSSKSW-DVETATELLLSN 253 (253)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 46799999999999999999999877 999999999973
No 55
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=95.06 E-value=0.041 Score=39.66 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=38.3
Q ss_pred ccccCHHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHHHhcCCC
Q 022703 110 EPEVDKELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVEHENDP 157 (293)
Q Consensus 110 ~~~~~~~~l~~L~~MGF~---~~~a~kAL~~tgn~~~E~A~~WL~~h~dD~ 157 (293)
.+.+.++.+.+|.+| || ...++.+|..++| +++.||+-|++..++.
T Consensus 5 ~~~~~ee~l~~L~em-FP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDM-FPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGEEP 53 (59)
T ss_dssp SSSSCHHHHHHHHHH-CSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSCCC
T ss_pred CCCCCHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcCCC
Confidence 466799999999999 76 4778888888877 9999999999966654
No 56
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=94.20 E-value=0.077 Score=35.36 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=33.8
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...++|..||+.+.....-+.|... .|.. ...|.|+.||+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~-~H~~-------~k~~~C~~C~k~F 51 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQ-VHTS-------ERPHKCQVWVSGP 51 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHH-TSCC-------CCCCCSSSSCCSS
T ss_pred CCCeECCCCCcccCCHHHHHHHHHH-hcCC-------CCCccCCCCCCCC
Confidence 4568999999999999999999875 5653 2449999999964
No 57
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=94.18 E-value=0.076 Score=39.00 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=36.4
Q ss_pred cccCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 111 PEVDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (293)
Q Consensus 111 ~~~~~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h 153 (293)
..++.+.|..|.+ -|.+...|.+||..+++ |++.|+.||-..
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~G-Di~~Ai~~Lr~k 48 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGG-DLKQAEIWLHKE 48 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 4567788888876 59999999999999987 999999999765
No 58
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.25 E-value=0.15 Score=38.52 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=34.1
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
....+|..||+.+.....-+.|...+||. .+. .-+.|+.||+.+
T Consensus 17 ~~~~~C~~C~k~f~~~~~L~~H~~~~~h~--~~~----~~~~C~~C~~~f 60 (115)
T 2dmi_A 17 ASKFRCKDCSAAYDTLVELTVHMNETGHY--RDD----NHETDNNNPKRW 60 (115)
T ss_dssp CCSEEBSSSSCEESSHHHHHHHHHHTCCC--BCS----CCCCCCCCCSCC
T ss_pred CCCEECCccCchhcCHHHHHHHHHHhCcc--ccC----CCccCCCCCccc
Confidence 45689999999999999999999877773 222 335699999863
No 59
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=93.12 E-value=0.024 Score=39.02 Aligned_cols=36 Identities=19% Similarity=0.489 Sum_probs=26.0
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
..+|.+||+|.....+-- +-|.+. -.+|+||.||.+
T Consensus 4 ~y~C~vCGyvyd~~~Gd~--------t~f~~l---P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN--------VPFDQL---PDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTT--------CCGGGS---CTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCC--------cchhhC---CCCCcCcCCCCc
Confidence 469999999986432111 667766 456999999975
No 60
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=92.85 E-value=0.038 Score=37.85 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=33.2
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...++|..||..+.....-+.|... -|. .+ ...|.|+.||+.+
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~-~H~--~~----~~~~~C~~C~k~f 50 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFCRHYVT-SHK--RN----VKVYPCPFCFKEF 50 (66)
T ss_dssp TTEEECTTTCCEESSHHHHHHHHHH-HSS--SS----CCCEECTTTCCEE
T ss_pred CcceECCCCcchhCCHHHHHHHHHH-HcC--CC----CcCeECCCCCCcc
Confidence 4568999999999999999999876 342 11 2459999999963
No 61
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=92.51 E-value=0.085 Score=37.35 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=33.9
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
+...++|..||+.+.....-+.|... .|.. + ...|.|+.|++.|
T Consensus 12 ~~k~~~C~~C~k~f~~~~~L~~H~~~-~h~~--~----~~~~~C~~C~~~f 55 (77)
T 2ct1_A 12 GEKPYECYICHARFTQSGTMKMHILQ-KHTE--N----VAKFHCPHCDTVI 55 (77)
T ss_dssp CCCSEECTTTCCEESCHHHHHHHHHH-HSSS--S----CSSEECSSSSCEE
T ss_pred CCCCeECCCcCchhCCHHHHHHHHHH-hcCC--C----CCccCCCCCCCcc
Confidence 34568999999999999999999875 3432 1 2459999999963
No 62
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.30 E-value=0.049 Score=38.66 Aligned_cols=44 Identities=30% Similarity=0.529 Sum_probs=33.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
+...++|..||+.+.....-..|... |..-. ....|.|+.||+.
T Consensus 4 ~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~----~~~~~~C~~C~k~ 47 (78)
T 2d9h_A 4 GSSGLQCEICGFTCRQKASLNWHQRK--HAETV----AALRFPCEFCGKR 47 (78)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHHH--HHHHT----TTCCEECTTTCCE
T ss_pred CCcCeECCCCCCeeCCHHHHHHHHHH--hhccC----CCcccCCCCCCch
Confidence 45678999999999999999999754 43211 1245999999996
No 63
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=92.14 E-value=0.066 Score=37.83 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=32.5
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...+|..||+.+.....-..|... |++ . .-|.|+.||+.|
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~--Ht~---e----kp~~C~~C~k~F 42 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRA--HLG---Y----RPRSCPECGKCF 42 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHH--HHT---C----CCEECTTTCCEE
T ss_pred CCccCCCCCCEeCCHHHHHHHHHH--hCC---C----cCeECCCCCCCc
Confidence 457999999999999999999754 742 2 459999999964
No 64
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=92.02 E-value=0.068 Score=35.32 Aligned_cols=38 Identities=21% Similarity=0.504 Sum_probs=30.9
Q ss_pred eecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
.+|..||..+.....-..|... |.. ...|.|+.||+.+
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 39 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRT--HTD-------VRPYHCTYCNFSF 39 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHH--TSS-------CCCEECSSSSCEE
T ss_pred CcCCCCcCcCCCHHHHHHHHHh--cCC-------CCCccCCCCCchh
Confidence 5799999999999999999865 543 1349999999964
No 65
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=91.72 E-value=0.087 Score=36.90 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=33.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
....++|..|++.+.....-+.|... |.. ...|.|+.|++.|
T Consensus 11 ~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~-------~~~~~C~~C~~~f 52 (72)
T 1x6e_A 11 GEKPYGCVECGKAFSRSSILVQHQRV--HTG-------EKPYKCLECGKAF 52 (72)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHG--GGC-------SCCEECSSSCCEE
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHh--cCC-------CCCeECCCCCccc
Confidence 34568999999999999999999764 542 2349999999963
No 66
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=91.64 E-value=0.13 Score=40.08 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=36.0
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
+...++|..||+.+.....-..|... .|.++.+. ..|.|+.||+.|
T Consensus 15 gekpy~C~~Cgk~F~~~~~L~~H~r~-~H~~~~~e----kpf~C~~Cgk~F 60 (102)
T 2ghf_A 15 VEGGYECKYCTFQTPDLNMFTFHVDS-EHPNVVLN----SSYVCVECNFLT 60 (102)
T ss_dssp CCSSEECSSCSCEESCHHHHHHHHHH-HCSSCCCS----CCEEETTTTEEE
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHHh-hCCCCCCC----CCcCCCCCCccc
Confidence 44568999999999999999999865 57664333 349999999964
No 67
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=91.49 E-value=0.055 Score=35.80 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=30.9
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...+|..||..+.....-..|... |.. ...|.|+.||+.+
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 42 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRT--HTG-------EKPYKCEFCEYAA 42 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHH--HHC-------CCCEECSSSSCEE
T ss_pred CCccCCCCcchhCChHHHHHHHHH--cCC-------CCCcCCCCCcchh
Confidence 467899999999999999999774 532 1349999999863
No 68
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=91.35 E-value=0.18 Score=32.47 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=31.1
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~ 50 (293)
...++|..||+.+.....-+.|.. .|.. . ..|.|+.||+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C~k 48 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNRHKL--SHSG---E----KPYSSGPSSG 48 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHHHGG--GSCS---C----CCCCSCCCCC
T ss_pred CcCeeCCCCCcccCCHHHHHHHHH--hcCC---C----CCccCCCCCC
Confidence 456899999999999999999964 3642 2 3499999986
No 69
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=91.27 E-value=0.085 Score=37.06 Aligned_cols=41 Identities=24% Similarity=0.501 Sum_probs=32.7
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
....+|..||+.+.....-+.|... |.. ...|.|+.||+.+
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~~--H~~-------~~~~~C~~C~k~f 55 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKTV--HTG-------EKPYRCNICGAQF 55 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHHH--HCC-------CCSEECTTTCCEE
T ss_pred CCCeECCCCCceeCCHHHHHHHHHH--cCC-------CCCEECCCCCchh
Confidence 4568999999999999999999764 542 1349999999964
No 70
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=91.18 E-value=0.17 Score=31.98 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=31.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCG 49 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg 49 (293)
+....+|..||+.+.....-..|... |.. ...|.|+.||
T Consensus 7 ~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~-------~~~~~C~~cg 45 (45)
T 2epq_A 7 GEKPYSCPVCGLRFKRKDRMSYHVRS--HDG-------SVGKSGPSSG 45 (45)
T ss_dssp SCCSSEETTTTEECSCHHHHHHHHHH--HSC-------CCCCCCCCCC
T ss_pred CCCCCcCCCCCcccCCHHHHHHHHHH--ccC-------CCCCCCcCCC
Confidence 34568999999999999999999754 653 2458999997
No 71
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=91.17 E-value=0.12 Score=34.51 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=31.4
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
..+|..||..+.....-+.|... |.. ...|.|+.||+.+
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 40 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRS--HTN-------EKPYPCGLCNRAF 40 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHT--TTS-------SCSEECTTTCCEE
T ss_pred cCcCCCCccccCCHHHHHHHHHH--hCC-------CCCccCCCCCCcc
Confidence 46899999999999999999764 642 1349999999963
No 72
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=91.04 E-value=0.13 Score=35.65 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=33.4
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
....++|..||+.+.....-+.|... |.. ...|.|+.|++.+
T Consensus 6 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C~~~f 47 (70)
T 1x5w_A 6 SGHPEKCSECSYSCSSKAALRIHERI--HCT-------DRPFKCNYCSFDT 47 (70)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHGG--GCC-------SCSEECSSSSCEE
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHH--cCC-------CCCEeCCCCCCcc
Confidence 35678999999999999999999854 642 1349999999963
No 73
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.68 E-value=0.25 Score=36.48 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=35.1
Q ss_pred cCHHHHHHHHhCCCCH---HHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 022703 113 VDKELLKELEAMGFPV---ARATRALHYSGNANVEAAVNWVVEHEND 156 (293)
Q Consensus 113 ~~~~~l~~L~~MGF~~---~~a~kAL~~tgn~~~E~A~~WL~~h~dD 156 (293)
.-+..+.+|.+| ||. ..+++.|..+|| +++.||+-|+...++
T Consensus 17 ~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 17 EFNQAMDDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNLE 61 (67)
T ss_dssp CSHHHHHHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCCC
Confidence 456789999999 865 778899999887 899999999886554
No 74
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=90.42 E-value=0.21 Score=37.88 Aligned_cols=40 Identities=28% Similarity=0.574 Sum_probs=32.3
Q ss_pred ceeecccCCccc-cCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCC
Q 022703 4 VSLKCGDCGALL-RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (293)
Q Consensus 4 ~~LkC~~Cg~v~-~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~ 53 (293)
..++|..||+.+ .....-..|... | ++ ..|.|+.||+.|.
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~H~~~--h---~~-----k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMEN--C---KQ-----EMFTCHHCGKQLR 73 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHHHHHH--H---CC-----CCCCCSSSCCCCS
T ss_pred CCcCCCCCCCCcccCHHHHHHHHHH--H---CC-----CCeECCCCCCeeC
Confidence 357999999999 899999999865 5 22 3499999999753
No 75
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=90.36 E-value=0.21 Score=35.22 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCHHHHH--HHHHHhCCCCHHHHHHHH
Q 022703 116 ELLKELEAMGFPVARAT--RALHYSGNANVEAAVNWV 150 (293)
Q Consensus 116 ~~l~~L~~MGF~~~~a~--kAL~~tgn~~~E~A~~WL 150 (293)
++|.||++|||+-.-.- +.|. +.|.++..|+|-|
T Consensus 12 ~al~qMl~MGF~negGWLt~LL~-~k~gDI~~aLD~l 47 (52)
T 1q02_A 12 ESLSQMLSMGFSDEGGWLTRLLQ-TKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHTTTCCCTTSHHHHHHH-HTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCccccHHHHHHH-HccCCHHHHHHHh
Confidence 56899999999986664 5454 4445899999876
No 76
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=89.96 E-value=0.28 Score=35.52 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=13.1
Q ss_pred ceeecccCCccccCHHHHHHHHH
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
..++|..|+..+.....-..|..
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~ 28 (95)
T 2yt9_A 6 SGVACEICGKIFRDVYHLNRHKL 28 (95)
T ss_dssp SCEECSSSCCEESSSHHHHHHHH
T ss_pred CCeECCCCCCccCChHHHHHHHH
Confidence 34556666666655555555554
No 77
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=89.66 E-value=0.23 Score=35.26 Aligned_cols=44 Identities=27% Similarity=0.553 Sum_probs=33.0
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCC-CCcchhhhhccccCCCCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN-FSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~-F~e~~d~i~~~~C~~Cg~~ 51 (293)
+...++|..|++.+.....-..|... -|.. +.+ ..|.|+.|++.
T Consensus 12 ~~k~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~~-----~~~~C~~C~~~ 56 (86)
T 1x6h_A 12 GEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVP-----AAFVCSKCGKT 56 (86)
T ss_dssp CCCCEECSSSSCEESSHHHHHHHHHH-TTCSSCCC-----CCEECSSSCCE
T ss_pred CCCCCcCCCCCCccCCHHHHHHHHHH-hcCCcCCC-----cceECCCCCCh
Confidence 34568999999999999999999876 3321 111 24899999996
No 78
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.57 E-value=0.18 Score=37.77 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=32.4
Q ss_pred cceeecccCCcccc-CHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCGDCGALLR-SVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~-~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...++|..||+.+. ....-+.|... |.. ....|.|+.||+.|
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~~H~~~--h~~------~~~~~~C~~C~k~F 64 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLKKHMEV--CQK------LQDALKCQHCRKQF 64 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHHHHHHH--HHH------HHHHHSCSSSCCCC
T ss_pred CCCcCCCCCCCChhhhHHHHHHHHHH--HcC------CCCCEECCCCCCcc
Confidence 35679999999999 88888899854 432 12459999999974
No 79
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=89.38 E-value=0.043 Score=42.11 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=27.1
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
..+|.+||+|..+..+--...-.-| +-|.+. -.+|+||.||-+
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAG-TRWDDI---PDDWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTT-CCTTTS---CTTCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 6899999999865432211111112 236655 456999999975
No 80
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=89.08 E-value=0.19 Score=35.41 Aligned_cols=41 Identities=24% Similarity=0.580 Sum_probs=32.6
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...++|..||+.+.....-..|... |.. ...|.|+.|++.+
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 56 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRT--HTG-------EKPYKCDECGKAF 56 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTT--TCC-------SCSEECSSSCCEE
T ss_pred CCCEECCCCCcccCCHHHHHHHHHH--cCC-------CcCeeCCCCCCcc
Confidence 3567999999999999999999753 543 1349999999964
No 81
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=89.06 E-value=0.047 Score=38.40 Aligned_cols=43 Identities=23% Similarity=0.559 Sum_probs=27.2
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
+.+|.+||+|-.+..+--.+.-.-| +-|.+. -.+|+||.||-.
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPG-TKFEDL---PDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTT-CCGGGS---CTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCC-CCHhHC---CCCCcCCCCCCC
Confidence 5789999999866443222222212 236555 456999999975
No 82
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=89.04 E-value=0.044 Score=38.92 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=27.3
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
..+|..||+|-....+--.+.-. --+.|.+. -.+|+||.||-.
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~-pGt~fe~l---P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVN-PGTDFKDI---PDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBC-TTCCGGGS---CTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcC-CCCChhHC---CCCCcCcCCCCc
Confidence 46899999998654332222111 12456665 456999999974
No 83
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=88.80 E-value=0.21 Score=37.63 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=32.1
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
-...|..||+.|.....-..|... |.. . ..|.|+.||+.|
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~--H~~---~----k~~~C~~C~k~F 66 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRL--LHA---A----QVFPCKYCPATF 66 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHT--TSC---S----SSEECTTSSCEE
T ss_pred CCEECCCCCCCcCcHHHHhhhhhh--ccC---C----CccCCCCCCCEe
Confidence 346899999999999999999754 642 2 349999999964
No 84
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=88.69 E-value=0.063 Score=37.73 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=26.8
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
+.+|.+||+|-....+--.+.-.-| +-|.+. -.+|+||.||-.
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPG-TKFEDL---PDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSS-CCTTSS---CTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCC-CchHHC---CCCCcCCCCCCc
Confidence 5789999999865432211211212 236665 456999999975
No 85
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=88.01 E-value=0.37 Score=33.05 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=26.8
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
+....+|..||+.+.....-+ . .|.. ...|.|+.||+.+
T Consensus 11 ~~k~~~C~~C~k~F~~~~~l~----~-~H~~-------~k~~~C~~C~k~f 49 (62)
T 1vd4_A 11 NRASFKCPVCSSTFTDLEANQ----L-FDPM-------TGTFRCTFCHTEV 49 (62)
T ss_dssp SSSEEECSSSCCEEEHHHHHH----H-EETT-------TTEEBCSSSCCBC
T ss_pred CCCCccCCCCCchhccHHHhH----h-hcCC-------CCCEECCCCCCcc
Confidence 345689999999997543222 3 5642 1359999999964
No 86
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=87.86 E-value=0.34 Score=40.17 Aligned_cols=39 Identities=23% Similarity=0.532 Sum_probs=24.4
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhh---------hccccCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAV---------LNLVCATCGKP 51 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i---------~~~~C~~Cg~~ 51 (293)
-.++|.+||+.+.... -+..+.+..++. ..+.||.||++
T Consensus 69 ~~~~C~~CG~~~~~~~---------~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKE---------VKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CEEEETTTCCEEEGGG---------CTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred CcEECCCCCCEEeccc---------ccccccccccccccccccccccCCcCccccCC
Confidence 3689999999987622 112333332222 14789999997
No 87
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=87.54 E-value=0.056 Score=38.41 Aligned_cols=43 Identities=19% Similarity=0.439 Sum_probs=27.0
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
+.+|.+||+|..+..+--.+.-.-| +-|.+. -.+|+||.||-.
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pG-t~f~~l---P~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAG-TRWEDI---PADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTT-CCGGGS---CTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCC-CChhHC---CCCCcCCCCCCC
Confidence 5789999999866443222222212 235555 456999999975
No 88
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=87.00 E-value=0.063 Score=41.72 Aligned_cols=44 Identities=16% Similarity=0.430 Sum_probs=26.9
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
-..+|.+||+|..+..+--.+.-.-| +-|.+. -.+|.||.||-.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pG-T~fedl---PddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPG-TRFEDI---PDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSC-CCGGGC---CTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCC-CChhHC---CCCCCCCCCCCC
Confidence 36899999999865432211111111 235555 456999999975
No 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=86.94 E-value=0.29 Score=35.43 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=33.2
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...++|..|+..+.....-+.|... |..-. ...|.|+.|++.+
T Consensus 33 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~-----~~~~~C~~C~~~f 75 (95)
T 2yt9_A 33 EKPYSCPVCGLRFKRKDRMSYHVRS--HDGSV-----GKPYICQSCGKGF 75 (95)
T ss_dssp SCSEECSSSCCEESCHHHHHHHHHH--HCCCC-----CSSBCCSSSCCCB
T ss_pred CCCCcCCCCCCccCCHHHHHHHHHH--hcCCC-----CCceECCCccchh
Confidence 3468999999999999999999865 43211 1349999999974
No 90
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=86.89 E-value=0.39 Score=34.83 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=13.2
Q ss_pred ceeecccCCccccCHHHHHHHHH
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
..++|..|+..+.....-+.|..
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~ 29 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMR 29 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGG
T ss_pred cCeECCCCCCccCCHHHHHHHHH
Confidence 34556666666666555555544
No 91
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=86.26 E-value=0.58 Score=34.58 Aligned_cols=41 Identities=22% Similarity=0.427 Sum_probs=29.5
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~ 53 (293)
..++|..||..+.....-..|... |.. ...|.|+.|++.+.
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~ 56 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERT--HTD-------ERPYTCDICHKAFR 56 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHH--HCC-------SCCCBCSSSCCBCS
T ss_pred cCeECCCCCCccCCHHHHHHHHHH--cCC-------CCCcCCCCccchhC
Confidence 357899999999888888888764 432 13478888887643
No 92
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=86.14 E-value=0.077 Score=39.49 Aligned_cols=44 Identities=16% Similarity=0.429 Sum_probs=27.4
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
-..+|.+||+|-.+..+--.+.-.-| +-|.+. -.+|+||.||-+
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pG-T~f~~l---Pddw~CP~Cga~ 49 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPG-TPFVDL---SDSFMCPACRSP 49 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSS-CCGGGS---CTTCBCTTTCCB
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCC-CchhhC---CCCCcCCCCCCC
Confidence 36899999999865443222222212 235555 456999999975
No 93
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=85.99 E-value=0.4 Score=34.25 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=9.8
Q ss_pred eecccCCccccCHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHA 25 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha 25 (293)
+.|..||..+.....-+.|.
T Consensus 35 ~~C~~C~~~f~~~~~l~~H~ 54 (90)
T 1a1h_A 35 FQCRICMRNFSRSDHLTTHI 54 (90)
T ss_dssp EECTTTCCEESCHHHHHHHH
T ss_pred ccCCCCCcccCCHHHHHHHH
Confidence 44555555554444444444
No 94
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=85.91 E-value=0.54 Score=35.10 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=30.6
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~ 53 (293)
....+|..|++.+.....-+.|... |. ..|.|+.|++.+.
T Consensus 14 ~~~~~C~~C~~~f~~~~~l~~H~~~--H~---------~~~~C~~C~~~f~ 53 (107)
T 1wjp_A 14 KEVYQCRLCNAKLSSLLEQGSHERL--CR---------NAAVCPYCSLRFF 53 (107)
T ss_dssp CCCCBCTTTCCBCSSHHHHHHHHHH--HH---------HSBCCTTTCCCBS
T ss_pred CcCeECCCCCCccCCHHHHHHHHHH--CC---------CCccCCCCCCccC
Confidence 3457899999999988888888765 51 2488999988753
No 95
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=85.26 E-value=0.49 Score=35.67 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=32.0
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCCCc
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSK 55 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~~~ 55 (293)
+...++|..||..+.....-+.|... |.. ...|.|+.|++.+.+.
T Consensus 4 ~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~~ 48 (124)
T 2dlq_A 4 GSSGVECPTCHKKFLSKYYLKVHNRK--HTG-------EKPFECPKCGKCYFRK 48 (124)
T ss_dssp CCSSCCCTTTCCCCSSHHHHHHHHHH--HSS-------CCSCBCTTTCCBCSSH
T ss_pred CCCCCCCCCCCCcCCCHHHHHHHHHh--CCC-------CCCeECCCCCchhcCH
Confidence 34567899999999888888888764 432 1347888888864333
No 96
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=85.25 E-value=0.4 Score=33.48 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=9.7
Q ss_pred ecccCCccccCHHHHHHHHH
Q 022703 7 KCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 7 kC~~Cg~v~~~~~~aq~ha~ 26 (293)
+|..||..+.....-..|..
T Consensus 3 ~C~~C~~~f~~~~~l~~H~~ 22 (82)
T 2kmk_A 3 DCKICGKSFKRSSTLSTHLL 22 (82)
T ss_dssp ECSSSCCEESSHHHHHHHHH
T ss_pred cCCCCcccccCchhHHHHHH
Confidence 45555555544444444443
No 97
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=84.87 E-value=0.53 Score=34.81 Aligned_cols=42 Identities=24% Similarity=0.494 Sum_probs=32.6
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~~ 54 (293)
..++|..|+..+.....-+.|... |.. ...|.|+.|++.+.+
T Consensus 44 ~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDHLRDHRYI--HSK-------EKPFKCQECGKGFCQ 85 (106)
T ss_dssp CCCBCSSSCCBCSCHHHHHHHGGG--SCC-------CCTTSCSSSCCCCSS
T ss_pred CCcCCCCccchhCCHHHHHHHHHH--hCC-------CCCeECCCcCCcccC
Confidence 457999999999999999999643 532 134999999997533
No 98
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=84.82 E-value=0.32 Score=35.26 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=32.2
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
..++|..|+..+.....-+.|... |.. ...|.|+.|++.+
T Consensus 35 ~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 74 (96)
T 2dmd_A 35 KPYKCKTCDYAAADSSSLNKHLRI--HSD-------ERPFKCQICPYAS 74 (96)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHH--SCC-------CCCEECSSSSCEE
T ss_pred CCEeCCCCCCccCCHHHHHHHHHH--hCC-------CCCccCCCCCCcc
Confidence 457999999999999999999865 532 1349999999964
No 99
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.80 E-value=0.67 Score=31.76 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=30.2
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccC-CCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA-TCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~-~Cg~~~ 52 (293)
...++|..||+.+. ...-+.|...| +. ..|.|+ .||+.+
T Consensus 8 ~~~~~C~~C~k~f~-~~~L~~H~~~~------~~----~p~~C~~~C~k~f 47 (66)
T 2eod_A 8 KRTQPCTYCTKEFV-FDTIQSHQYQC------PR----LPVACPNQCGVGT 47 (66)
T ss_dssp CCEEECSSSCCEEE-HHHHHHHHHHC------SS----SEEECTTCCSCCE
T ss_pred CCCeeccccCCccC-HHHHHHHHHHc------CC----cCccCCcccCccc
Confidence 34689999999999 88888897542 22 348999 999963
No 100
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=84.77 E-value=1.8 Score=29.92 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=33.0
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 022703 115 KELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (293)
Q Consensus 115 ~~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD 156 (293)
++-+..|.+| ..+...++.+|...+| +++.||+-|++-.++
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~G-d~d~Ai~~LL~~~~~ 47 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNN-DLDLTIGLLLKENDD 47 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTT-CSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcccc
Confidence 4568899999 3446888999999887 999999999886444
No 101
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=84.73 E-value=0.55 Score=35.05 Aligned_cols=40 Identities=23% Similarity=0.551 Sum_probs=28.6
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...++| .|++.+.....-..|... |.. ...|.|+.|++.+
T Consensus 8 ~k~~~C-~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 47 (110)
T 2csh_A 8 DKLYPC-QCGKSFTHKSQRDRHMSM--HLG-------LRPYGCGVCGKKF 47 (110)
T ss_dssp CCCEEC-TTSCEESSHHHHHHHHHH--HSC-------CCSEECTTTSCEE
T ss_pred CCCEec-cCCCccCCHHHHHHHHHH--cCC-------CcCccCCCCCccc
Confidence 456788 888888888888888764 432 1337888888764
No 102
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.58 E-value=1.1 Score=28.03 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=29.5
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-+.|... |.+ . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----~~~~C~~c 46 (46)
T 2ytk_A 9 GEKPYKCNECGKVFTQNSHLTNHWRI--HTG---E----KPSGPSSG 46 (46)
T ss_dssp SSCSEECSSSCCEESSHHHHHHHHHH--HSS---S----SCSSCCCC
T ss_pred CCCCEeCCcCCCccCCHHHHHHHHHH--HCC---C----CCCCCCCC
Confidence 34568999999999999999999764 642 2 34899887
No 103
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=84.53 E-value=0.31 Score=35.26 Aligned_cols=40 Identities=18% Similarity=0.454 Sum_probs=31.7
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~ 53 (293)
..+|..||..+.....-..|... |.. ...|.|+.||+.+.
T Consensus 3 ~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C~k~f~ 42 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLTTHIRT--HTG-------EKPFACDICGRKFA 42 (88)
T ss_dssp CEECTTTCCEESCHHHHHHHHHH--HHC-------CCCEECTTTCCEES
T ss_pred CCcCCCCCCccCCHHHHHHHHHH--cCC-------CCCccCCCCCCccC
Confidence 47899999999999999999764 532 13499999999643
No 104
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=84.53 E-value=0.52 Score=36.35 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=31.1
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...+|..||+.+.....-..|... | + ..|.|+.||+.|
T Consensus 73 ~~~~C~~C~k~f~~~~~l~~H~~~--H----~-----~~~~C~~C~k~f 110 (129)
T 2wbt_A 73 SQFVCPLCLMPFSSSVSLKQHIRY--T----E-----HTKVCPVCKKEF 110 (129)
T ss_dssp CSEECTTTCCEESSHHHHHHHHHH--T----C-----CCCBCTTTCCBC
T ss_pred CCeECCCCCcccCCHhHHHHHHHH--C----C-----CCCCCCCCCccc
Confidence 457899999999999999999854 6 1 238999999974
No 105
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=84.43 E-value=0.47 Score=35.76 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=12.6
Q ss_pred eeecccCCccccCHHHHHHHHHH
Q 022703 5 SLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
.++|..|++.+.....-..|...
T Consensus 35 ~~~C~~C~~~f~~~~~l~~H~~~ 57 (124)
T 2dlq_A 35 PFECPKCGKCYFRKENLLEHEAR 57 (124)
T ss_dssp SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred CeECCCCCchhcCHHHHHHHHhh
Confidence 34555566555555555555543
No 106
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.28 E-value=1.2 Score=27.88 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=29.5
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.+ ...|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2emy_A 9 GENPYECHECGKAFSRKYQLISHQRT--HAG-------EKPSGPSSG 46 (46)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHH--HTT-------SCCSCSSCC
T ss_pred CCcCcCCCCCCcccCcHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 34568999999999999999999654 653 134889887
No 107
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=84.10 E-value=0.2 Score=44.52 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 022703 115 KELLKELEAMGFPVARATRALHYSGNANVEAAVNWVVE 152 (293)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~ 152 (293)
.+.+..|++|||+++.+..||...|. +++.|++-|+.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~-~~~~~~~~l~~ 214 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANW-NETLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCC-chHHHHHHHhc
Confidence 57899999999999999999988876 89999998875
No 108
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.99 E-value=0.99 Score=28.24 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=28.6
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
....+|..||+.+.....-..|... .|.+ . ..|.|+.|
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~-~H~~---~----k~~~C~~C 47 (47)
T 2epx_A 10 KKPYECIECGKAFIQNTSLIRHWRY-YHTG---E----KPSGPSSG 47 (47)
T ss_dssp CCSBCCSSSCCCBSSHHHHHHHHTT-TTTT---S----CSSSCCCC
T ss_pred CCCEECCccCchhCChHHHHHHhHh-hcCC---C----CCCCCCCC
Confidence 4567899999999999999999763 3532 2 34888887
No 109
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=83.60 E-value=0.5 Score=32.97 Aligned_cols=40 Identities=23% Similarity=0.534 Sum_probs=31.8
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
..++|..||..+.....-+.|... |.. ...|.|+.||+.+
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 67 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFI--HTG-------EKPHKCQVCGKAF 67 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHH--HHT-------CCCEECTTTSCEE
T ss_pred CCeeCCcCChhhCCHHHHHHHHHH--hcC-------CCCCcCCCcchhh
Confidence 457999999999999999999764 421 2349999999964
No 110
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=83.34 E-value=1.1 Score=28.03 Aligned_cols=38 Identities=16% Similarity=0.388 Sum_probs=29.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~c 46 (46)
T 2ema_A 9 GEKRYKCNECGKVFSRNSQLSQHQKI--HTG---E----KPSGPSSG 46 (46)
T ss_dssp TSCCEECSSSCCEESSHHHHHHHHTG--GGC---C----CCCSSSCC
T ss_pred CCcCcCCCCCcchhCCHHHHHHHHHh--cCC---C----CCCCCCCC
Confidence 34568999999999999999999643 642 1 34899887
No 111
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=82.93 E-value=0.78 Score=36.32 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=34.1
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcch-hhhhccccCCCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPCRS 54 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~-d~i~~~~C~~Cg~~~~~ 54 (293)
.+.+.|..||..+.....-+.|... -|..=.... ....-|.|+.|++.+.+
T Consensus 23 ~~~~~C~~C~~~f~~~~~L~~H~~~-~H~~~~~~~~~~~~~~~C~~C~~~f~~ 74 (155)
T 2rpc_A 23 QLSRPKKSCDRTFSTMHELVTHVTM-EHVGGPEQNNHVCYWEECPREGKSFKA 74 (155)
T ss_dssp CCSSSCCCCCCCBSSHHHHHHHHHT-TTSCCTTCSSCCCCBTTCTTSSCCCSS
T ss_pred hcccccccCCcccCCHHHHHHHHHh-hcCCCcccCCccccccCCCCcccccCC
Confidence 4678899999999999999999875 454311110 00112789999987543
No 112
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.75 E-value=1.3 Score=27.64 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=28.8
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-+.|.. .|.+ . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2eov_A 9 GEKPYKCSDCGKSFTWKSRLRIHQK--CHTG---E----RHSGPSSG 46 (46)
T ss_dssp SCCSCBCSSSCCBCSSHHHHHHHHH--HHSC---C----SSCCSCCC
T ss_pred CCCCccCCccChhhCCHHHHHHHHH--hcCC---C----CCCCCCCC
Confidence 3456789999999999999999964 3642 1 34889887
No 113
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=82.74 E-value=1.5 Score=27.49 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=29.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2el6_A 9 GVNPYKCSQCEKSFSGKLRLLVHQR--MHTR---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHG--GGCC---S----SCCSCCCC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHH--HcCC---C----CCCCCCCC
Confidence 3456899999999999999999954 3653 1 34889887
No 114
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.59 E-value=1.5 Score=27.30 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=29.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2emm_A 9 GERPHKCNECGKSFIQSAHLIQHQRI--HTG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH--HSC---C----CTTSSSCC
T ss_pred CCCCeeCCCCChhhCCHHHHHHHHHH--hCC---C----CCCCCCCC
Confidence 34568999999999999999999654 643 2 34889887
No 115
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=82.55 E-value=0.44 Score=35.59 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=31.8
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
..++|..|+..+.....-+.|... |.. ...|.|+.|++.+
T Consensus 36 ~~~~C~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 75 (110)
T 2csh_A 36 RPYGCGVCGKKFKMKHHLVGHMKI--HTG-------IKPYECNICAKRF 75 (110)
T ss_dssp CSEECTTTSCEESSSHHHHHHHTT--TCC-------CCCEECSSSCCEE
T ss_pred cCccCCCCCcccCCHHHHHHHHHH--cCC-------CCCeeCCCCcchh
Confidence 458999999999999999999753 532 1349999999963
No 116
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.46 E-value=1.5 Score=27.36 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-+.|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2epw_A 9 GEKPCKCTECGKAFCWKSQLIMHQRT--HVD---D----KHSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSSHHHHHHHHH--CCS---C----CCSCCCCC
T ss_pred CCCCeeCCCCCCccCCHHHHHHHHHH--hCC---C----CCCCCCCC
Confidence 34568999999999999999999754 643 1 34889887
No 117
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=82.46 E-value=1.6 Score=30.32 Aligned_cols=52 Identities=25% Similarity=0.501 Sum_probs=30.6
Q ss_pred ceeeccc--CCccccCHHHHHHHHHHhccCCCCcchhhhhccccCC--CCCCCCCccccccccc
Q 022703 4 VSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRSKTETDLHRK 63 (293)
Q Consensus 4 ~~LkC~~--Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~--Cg~~~~~~~e~~~a~K 63 (293)
..+.|.. |+..+.....-+.|... .|.. ...|.|+. ||+.+.+......+.+
T Consensus 6 ~~~~C~~~~C~~~f~~~~~L~~H~~~-~H~~-------~~~~~C~~~~C~k~f~~~~~L~~H~~ 61 (79)
T 2dlk_A 6 SGMPCDFPGCGRIFSNRQYLNHHKKY-QHIH-------QKSFSCPEPACGKSFNFKKHLKEHMK 61 (79)
T ss_dssp SSEECSSTTTCCEESSHHHHHHHHHH-GGGS-------CCCEECSCTTTCCEESSHHHHHHHHH
T ss_pred CCccCCCCCCcCccCCHHHHHHHHHH-HhCC-------CCCeECCCCCCcCccCCHHHHHHHHH
Confidence 3455654 77777777777777764 3432 12367776 7776655544444443
No 118
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.41 E-value=1.4 Score=27.66 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=29.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2em5_A 9 STKSHQCHECGRGFTLKSHLNQHQR--IHTG---E----KPSGPSSG 46 (46)
T ss_dssp CSCSEECSSSCCEESSHHHHHHHHT--TTSC---S----CCSSCCCC
T ss_pred CCCCeECCcCCCccCCHHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 3456899999999999999999964 3642 2 34889887
No 119
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.38 E-value=1.7 Score=27.09 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=28.9
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
...++|..||+.+.....-+.|... |.+ . ..|.|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----~~~~C~~C 46 (46)
T 2enc_A 10 EKPFKCEECGKGFYTNSQCYSHQRS--HSG---E----KPSGPSSG 46 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHH--SCC---S----SCCSSCCC
T ss_pred CCCcCCCCCCCcCCChHHHHHHHHH--hCC---C----CCCCCCCC
Confidence 4568999999999999999999654 643 2 34889887
No 120
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.35 E-value=1.5 Score=27.39 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=29.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----~~~~C~~C 46 (46)
T 2ytd_A 9 GEKPYKCSECGKAFHRHTHLNEHRRI--HTG---Y----RPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH--HTC---C----CSSCSSCC
T ss_pred CCcCeECCCCCCeeCChHHHHHHHHH--cCC---C----CCCCCCCC
Confidence 34568999999999999999999643 653 1 34899887
No 121
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.30 E-value=1.6 Score=27.01 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=29.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+...++|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----~~~~C~~C 44 (44)
T 2emx_A 7 GEKPFGCSCCEKAFSSKSYLLVHQQT--HAE---E----KPSGPSSG 44 (44)
T ss_dssp SCCCEECSSSSCEESSHHHHHHHHHH--HTS---S----CSCSCCCC
T ss_pred CCcCccCCCCCcccCCHHHHHHHHHH--hCC---C----CCCCCCCC
Confidence 34568999999999999999999754 642 1 34889887
No 122
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.29 E-value=1.5 Score=27.45 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=29.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.+ ...|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~c 46 (46)
T 2emh_A 9 GERPYICTVCGKAFTDRSNLIKHQKI--HTG-------EKPSGPSSG 46 (46)
T ss_dssp CCCSEECTTTCCEESSHHHHHHHHHH--HHC-------SSCSSSCCC
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence 34568999999999999999999753 542 134889887
No 123
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.24 E-value=1.5 Score=27.37 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=29.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2eml_A 9 GEKPYECSVCGKAFSHRQSLSVHQR--IHSG---K----KPSGPSSG 46 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHG--GGSS---C----CCSCSSCC
T ss_pred CCCCeeCCCcCCccCCHHHHHHHHH--HhcC---C----CCCCCCCC
Confidence 3456899999999999999999965 3643 2 34889887
No 124
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.03 E-value=1.4 Score=27.63 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=28.9
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-+.|... |.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~---~----k~~~C~~c 46 (46)
T 2emf_A 9 GGKHFECTECGKAFTRKSTLSMHQKI--HTG---E----KPSGPSSG 46 (46)
T ss_dssp SSCCEECSSSCCEESCHHHHHHHGGG--TSC---S----SCSCCCCC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHH--hCC---C----CCCCCCCC
Confidence 34568999999999999999999753 642 2 34889887
No 125
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=82.03 E-value=0.78 Score=31.64 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=31.6
Q ss_pred cceeecc--cCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~--~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...++|. .||..+.....-..|... |.. ...|.|+.||+.+
T Consensus 17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 59 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRSDELTRHIRI--HTG-------QKPFQCRICMRNF 59 (73)
T ss_dssp CCCEECSSTTBCCEESSHHHHHHHHHH--HHC-------CCCEECTTTCCEE
T ss_pred CCccCCcCCCCCCccCCHHHHHHHHHh--hCC-------CCCeECCCCCchh
Confidence 4568997 699999999999999753 532 2349999999964
No 126
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=81.92 E-value=1.5 Score=27.52 Aligned_cols=38 Identities=13% Similarity=0.312 Sum_probs=29.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2emk_A 9 GEKPYECKECGKAFSQTTHLIQHQRV--HTG---E----KPSGPSSG 46 (46)
T ss_dssp SSCSCBCSSSCCBCSCHHHHHHHHHH--HSS---C----CCSSCCCC
T ss_pred CCCceECCCCCchhCCHHHHHHHHHH--cCC---C----CCCCCCCC
Confidence 34567899999999999999999754 643 1 34889887
No 127
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=81.92 E-value=0.42 Score=35.75 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=30.8
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
.++|..||..+.....-+.|. + |.. ...|.|+.|++.|
T Consensus 42 ~~~C~~C~~~f~~~~~l~~H~--~-H~~-------~~~~~C~~C~~~f 79 (107)
T 1wjp_A 42 AAVCPYCSLRFFSPELKQEHE--S-KCE-------YKKLTCLECMRTF 79 (107)
T ss_dssp SBCCTTTCCCBSSHHHHHHHH--H-HCS-------TGGGEEGGGTEEC
T ss_pred CccCCCCCCccCCHHHHHHHH--H-cCC-------CCCccCccccchh
Confidence 368999999999999999997 3 652 2349999999964
No 128
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.90 E-value=1.6 Score=27.25 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=28.5
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
....+|..||+.+.....-..|... |.. . ..|.|+.|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2yso_A 10 EKSHQCRECGEIFFQYVSLIEHQVL--HMG---Q----KNSGPSSG 46 (46)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHH--HSC---C----SCCCTTCC
T ss_pred CCCEEccccChhhCCHHHHHHHHHH--hCC---C----CCCCCCCC
Confidence 4568999999999999999999654 642 2 34889887
No 129
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.89 E-value=1.8 Score=27.10 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=29.0
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2eoo_A 9 GERPYGCNECGKNFGRHSHLIEHLKR--HFR---E----KSSGPSSG 46 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHHH--HHS---T----TSSCCSCC
T ss_pred CCCCEEccccCcccCCHHHHHHHHHH--HcC---C----CCCCCCCC
Confidence 34568999999999999999999654 642 1 34889887
No 130
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.85 E-value=1.9 Score=26.88 Aligned_cols=38 Identities=13% Similarity=0.283 Sum_probs=29.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+...++|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~c 46 (46)
T 2ytj_A 9 GEKPYICAECGKAFTIRSNLIKHQKI--HTK---Q----KPSGPSSG 46 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHH--TSC---C----CCSSCSCC
T ss_pred CCcCeECCCCChhhCCHHHHHHHHHH--cCC---C----CCCCCCCC
Confidence 34568999999999999999999754 642 2 34889877
No 131
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.67 E-value=1.7 Score=26.98 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=29.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+...++|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2eme_A 9 GEKPYVCDYCGKAFGLSAELVRHQR--IHTG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHG--GGCC---C----SCCSSCCC
T ss_pred CCCCeECCCCChhhCCHHHHHHHHH--hcCC---C----CCCCCCCC
Confidence 3456899999999999999999974 4642 1 34899887
No 132
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.61 E-value=1.7 Score=27.06 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=29.4
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~c 46 (46)
T 2ep2_A 9 GEKPYECSICGKSFTKKSQLHVHQQ--IHTG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHH--TTSS---C----CSCCSCCC
T ss_pred CCcCcCCCCCCcccCCHHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 3456899999999999999999975 4643 1 34889887
No 133
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.55 E-value=1.5 Score=27.39 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=29.5
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2en6_A 9 GEKPYGCNECGKTFSQKSILSAHQRT--HTG---E----KPSGPSSG 46 (46)
T ss_dssp SSCCEEETTTTEEESSHHHHHHHHHH--HSS---C----CCSSSCCC
T ss_pred CCcCeECCCCCcccCchHHHHHHHHH--cCC---C----CCCCCCCC
Confidence 34568999999999999999999764 642 1 34889887
No 134
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.55 E-value=1.4 Score=27.42 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=29.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C 46 (46)
T 2en8_A 9 GEKSHTCDECGKNFCYISALRIHQR--VHMG---E----KCSGPSSG 46 (46)
T ss_dssp CCSSEECTTTCCEESSHHHHHHHHT--TTCC---S----CSSCCSCC
T ss_pred CCCCeECCCcCcccCCHHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 3456899999999999999999964 4653 1 34899887
No 135
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.44 E-value=1.3 Score=27.53 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=28.7
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+...++|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C 46 (46)
T 2eop_A 9 GEKPHECRECGKSFSFNSQLIVHQR--IHTG---E----NPSGPSSG 46 (46)
T ss_dssp CCCSCBCTTTCCBCSSHHHHHHHHT--TTTT---S----CCSCCCCC
T ss_pred CCCCeeCCCCCchhCCHHHHHHHHH--HcCC---C----CCCCCCCC
Confidence 3456889999999999999999964 3642 2 34889887
No 136
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.44 E-value=1.1 Score=32.28 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=31.5
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcch-hhhhccccCCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSEST-EAVLNLVCATCGKPC 52 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~-d~i~~~~C~~Cg~~~ 52 (293)
...|..||..+.....-..|... -|..-.... -.-.-|.|+.||+.+
T Consensus 25 ~~~C~~C~k~f~~~~~L~~H~~~-~H~~~~~~~~~~c~~~~C~~C~k~f 72 (95)
T 2ej4_A 25 SRPKKSCDRTFSTMHELVTHVTM-EHVGGPEQNNHVCYWEECPREGKSF 72 (95)
T ss_dssp SSSCCCCCCCCSSHHHHHHHHHH-TTTCCTTCSCCCCCCTTCSSTTCCC
T ss_pred CCcccccccccCCHHHHHHHHHH-hccCCCCCCccceeccCCCCCCccc
Confidence 45699999999999999999765 465311100 000017999999974
No 137
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=81.37 E-value=0.69 Score=36.93 Aligned_cols=27 Identities=33% Similarity=0.871 Sum_probs=20.5
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhcc-ccCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNL-VCATCGKP 51 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~-~C~~Cg~~ 51 (293)
-..+|.+||..+... ...+ .||.||.+
T Consensus 72 ~~~~C~~CG~~~e~~---------------------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN---------------------ALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC---------------------CSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCC---------------------CCCCCcCccccCC
Confidence 367999999988761 1236 89999986
No 138
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.36 E-value=1.4 Score=27.53 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=28.9
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+...++|..||+.+.....-+.|.. .|.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C 46 (46)
T 2em7_A 9 GEKPYKCEECGKGFICRRDLYTHHM--VHTG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESCHHHHHHHGG--GGTT---C----CCSSTTCC
T ss_pred CCcCccCCCccchhCCHHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 3456899999999999999999954 4642 2 34889887
No 139
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.32 E-value=1.3 Score=27.61 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=29.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2eoe_A 9 GEKPYKCNECGKVFTQNSHLANHQR--IHTG---V----KPSGPSSG 46 (46)
T ss_dssp CCCSSEETTTTEECSSHHHHHHHHG--GGSC---C----CSCSSCCC
T ss_pred CCCCeECCCcChhhCCHHHHHHHHH--HcCC---C----CCCCCCCC
Confidence 3456899999999999999999974 4642 1 34899887
No 140
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=81.25 E-value=1.3 Score=27.63 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=28.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~---~----~~~~C~~C 46 (46)
T 2em0_A 9 GEKTWKCRECDMCFSQASSLRLHQNV--HVG---E----KPSGPSSG 46 (46)
T ss_dssp CCCCCCCSSSCCCCSSHHHHHHHGGG--GSS---S----SCSCSSCC
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHH--cCC---C----CCcCCCCC
Confidence 34567899999999999888888643 642 1 34888887
No 141
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.21 E-value=1.3 Score=27.66 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=28.5
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~---~----k~~~C~~C 46 (46)
T 2ytn_A 9 GKKPYKCNECGKVFTQNSHLARHRG--IHTG---E----KPSGPSSG 46 (46)
T ss_dssp CCSSCBCTTTCCBCSSHHHHHHHGG--GTSC---C----CCCSCCCC
T ss_pred CCcCeECCCCCCeeCCHHHHHHHhh--hcCC---C----CCCCCCCC
Confidence 3456789999999999999889954 4642 2 34889887
No 142
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=81.21 E-value=1.6 Score=27.21 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=29.0
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C 46 (46)
T 2el4_A 9 GVKPYGCSQCAKTFSLKSQLIVHQR--SHTG---V----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHGG--GSSS---C----CCSCCTTC
T ss_pred CCCceECCCCCchhCCHHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 3456899999999999999999964 4642 2 34889887
No 143
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.19 E-value=1.7 Score=27.03 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=29.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+...++|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----~~~~C~~C 46 (46)
T 2eq4_A 9 GEKLYNCKECGKSFSRAPCLLKHERL--HSG---E----KPSGPSSG 46 (46)
T ss_dssp CCCCCCBTTTTBCCSCHHHHHHHHHH--CCS---S----SCCCCCCC
T ss_pred CCCCeECCCCCCccCchHHHHHHHHh--cCC---C----CCCCCCCC
Confidence 34567899999999999999999753 643 1 34889887
No 144
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.19 E-value=1.7 Score=27.15 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=28.2
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
....+|..||+.+.....-..|... |.. . ..|.|+.|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2eoq_A 10 EKPFKCDICGKSFCGRSRLNRHSMV--HTA---E----KPSGPSSG 46 (46)
T ss_dssp SCSCCCSSSCCCCSSHHHHHHHHHH--TTC---C----CSSSCCCC
T ss_pred CCCcCCCcCCchhCCHHHHHHHHHH--cCC---C----CCCCCCCC
Confidence 4567899999999999999999653 642 1 34888887
No 145
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=80.86 E-value=0.53 Score=37.83 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=28.3
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...+|..||+.+.....-..|.. .|.+ ...|.|+.||+.|
T Consensus 21 k~y~C~~C~k~F~~~~~L~~H~~--~H~~-------~k~~~C~~C~k~F 60 (133)
T 2lt7_A 21 VYYICIVCKRSYVCLTSLRRHFN--IHSW-------EKKYPCRYCEKVF 60 (133)
T ss_dssp EEEEETTTCCEESCHHHHHHHHH--HHHC-------CSCEECSSSSCEE
T ss_pred cCeECCCCCCCcCCHHHHHHHHH--HcCC-------CCCeeCCccCeec
Confidence 45688888888888888888865 3642 1347788887753
No 146
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.63 E-value=1.7 Score=27.10 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=29.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2ene_A 9 GEKPYKCNECGKVFRHNSYLSRHQRI--HTG---E----KPSGPSSG 46 (46)
T ss_dssp CSSSEECSSSCCEESSHHHHHHHHTT--TCC---C----CCCSCCCC
T ss_pred CCCCeECCCCCchhCChHHHHHHHhh--cCC---C----CCCCCCCC
Confidence 34568999999999999999999653 642 2 34889887
No 147
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.56 E-value=1.7 Score=27.16 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=29.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+...++|..||+.+.....-+.|.. .|.. . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C 46 (46)
T 2ep0_A 9 GEKPYKCDVCHKSFRYGSSLTVHQR--IHTG---E----KPSGPSSG 46 (46)
T ss_dssp TCCSEECSSSCCEESSHHHHHHHHT--TTSS---S----CCCSCCCC
T ss_pred CCCCeeCcccCcccCChHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 3456899999999999999999964 4653 1 34889887
No 148
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.53 E-value=1.6 Score=27.30 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=28.1
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
....+|..||+.+.....-..|.. .|.. . ..|.|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C 46 (46)
T 2epz_A 10 EKPFDCIDCGKAFSDHIGLNQHRR--IHTG---E----KPSGPSSG 46 (46)
T ss_dssp CCSBCCTTTCCCBSSHHHHHHHHT--TTTT---C----CCCSSCCC
T ss_pred CCCeECCCCCceeCCHHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 456789999999999999899964 3542 2 34889887
No 149
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.49 E-value=1.9 Score=26.93 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=28.7
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
....+|..||+.+.....-+.|... |.+ ...|.|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2em8_A 10 EKPYKCVECGKGYKRRLDLDFHQRV--HTG-------EKLSGPSSG 46 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHHH--HHC-------CCCCCSCCC
T ss_pred CCCeECcccCchhCCHHHHHHHHHH--HcC-------CCCCCCCCC
Confidence 4568999999999999999999754 643 134889887
No 150
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.34 E-value=1.9 Score=26.90 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=29.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2emp_A 9 GVKPYMCNECGKAFSVYSSLTTHQVI--HTG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESCHHHHHHHHHH--HHC---C----SCCSCCCC
T ss_pred CCcCeECCCCCchhCCHHHHHHHHHH--cCC---C----CCCCCCCC
Confidence 34568999999999999999999754 542 1 34889887
No 151
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.11 E-value=1.6 Score=27.36 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=28.7
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C 46 (46)
T 2ytq_A 9 GEKPYGCSECGKAFSSKSYLIIHMR--THSG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSCBCSSSCCBCSCHHHHHHHHT--TTCC---S----CSSCCCCC
T ss_pred CCCCcCCCccChhhCChHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 3456789999999999999999964 3653 2 34889887
No 152
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.07 E-value=1.8 Score=26.98 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=29.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~---~----k~~~C~~c 46 (46)
T 2eq0_A 9 GEKPYKCHECGKVFRRNSHLARHQL--IHTG---E----KPSGPSSG 46 (46)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHT--TTCC---C----CCSCCSCC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHH--HcCC---C----CCCCCCCC
Confidence 3456899999999999999999964 3642 2 34889887
No 153
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.67 E-value=1.4 Score=27.53 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=28.4
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-+.|... |.. ...|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2yu8_A 9 GEKPYKCNECGKVFTQNSHLARHRRV--HTG-------GKPSGPSSG 46 (46)
T ss_dssp CCSSEECSSSCCEESSSHHHHHHTHH--HHS-------CCCSCSCCC
T ss_pred CCCCeECCcCCchhCCHHHHHHHHHh--cCC-------CCCCCCCCC
Confidence 34568999999999999888888643 532 134888887
No 154
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=79.64 E-value=1.5 Score=27.42 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=27.9
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
....+|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~C 46 (46)
T 2ely_A 10 EKPFKCVECGKGFSRRSALNVHHKL--HTG---E----KPSGPSSG 46 (46)
T ss_dssp CCSBCCSSSCCCBSSTTHHHHHHHH--HSC---C----SSCSCCCC
T ss_pred CCCcccCccCcccCCHHHHHHHHHH--cCC---C----CCCCCCCC
Confidence 4567899999999998888889754 642 1 34888877
No 155
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.58 E-value=1.6 Score=27.28 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=29.0
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2en1_A 9 GEKPFKCEECGKRFTQNSQLHSHQR--VHTG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGG--GGSC---C----CCSCCCCC
T ss_pred CCCCeeCCCCCcccCCHHHHHHHHH--HcCC---C----CCCCCCCC
Confidence 3456899999999999999999964 3643 1 34889887
No 156
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=79.28 E-value=0.98 Score=34.23 Aligned_cols=42 Identities=26% Similarity=0.555 Sum_probs=30.7
Q ss_pred Ccceeecc--cCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCC
Q 022703 2 AGVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCR 53 (293)
Q Consensus 2 ~~~~LkC~--~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~ 53 (293)
....++|. .||.++.....-..|... | ++ ..|.|+.||+.+.
T Consensus 2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h---~~-----~~~~C~~C~~~f~ 45 (124)
T 1ubd_C 2 EPRTIACPHKGCTKMFRDNSAMRKHLHT--H---GP-----RVHVCAECGKAFV 45 (124)
T ss_dssp ---CEECCSTTCCCEESSHHHHHHHHGG--G---SC-----CCEECTTTCCEES
T ss_pred CCCcccCCCCCCcCccCCHHHHHHHHHH--c---CC-----CCeECCCCCchhC
Confidence 44578898 899999999999999753 5 21 3489999998643
No 157
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.04 E-value=1.8 Score=27.05 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=29.1
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-+.|... |.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----~~~~C~~C 46 (46)
T 2ysp_A 9 GEKPYKCEKCGKGYNSKFNLDMHQKV--HTG---E----RPSGPSSG 46 (46)
T ss_dssp SCCSEEETTTTEEESCHHHHHHHHTT--SCS---C----CSSCCSCC
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHh--hCC---C----CCCCCCCC
Confidence 34568999999999999999999653 652 1 34889887
No 158
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.99 E-value=1.7 Score=27.26 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=28.3
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
...++|..||+.+.....-+.|... |.. ...|.|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C 46 (46)
T 2ytm_A 10 EKPYKCMECGKAFGDNSSCTQHQRL--HTG-------QRPSGPSSG 46 (46)
T ss_dssp CCSSSBTTTTBCCSSHHHHHHHHHH--HHS-------CCCCCCCCC
T ss_pred CCCcCCCCCCchhCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 4567899999999999999999754 542 134888887
No 159
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.69 E-value=1.5 Score=27.26 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=27.8
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
....+|..||+.+.....-+.|.. .|.. . ..|.|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2ytr_A 10 EKPYKCNECGKAFSQTSKLARHQR--IHTG---E----KPSGPSSG 46 (46)
T ss_dssp CCTTCCTTTCCCCSSHHHHHHHHT--TTTT---C----SCCCSCCC
T ss_pred CcCcCCCCCCCccCCHHHHHHHHH--hcCC---C----CCCCCCCC
Confidence 445789999999999998888954 3642 2 34888887
No 160
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=78.53 E-value=1.9 Score=26.78 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.8
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2em9_A 9 GEKPYNCKECGKSFRWASCLLKHQR--VHSG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHGG--GGTS---C----CCCSTTCC
T ss_pred CCcCeECCccccccCChHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 3456899999999999999999954 3653 1 34889887
No 161
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.35 E-value=1.8 Score=27.13 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=27.8
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
...++|..||+.+.....-..|.. .|.. . ..|.|+.|
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~--~H~~---~----~~~~C~~C 46 (46)
T 2elz_A 10 EKPYKCEDCGKGYNRRLNLDMHQR--VHMG---E----KTSGPSSG 46 (46)
T ss_dssp CSSCBCSSSCCBCSSHHHHHHHGG--GGGS---C----CCCCSCCC
T ss_pred CCCeeCcccCchhCCHHHHHHHHH--hcCC---C----CCCCCCCC
Confidence 456789999999999888888865 3642 1 34888887
No 162
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=77.70 E-value=3.9 Score=32.18 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH----hCC--CCHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 022703 116 ELLKELEAMGFPVARATRALHY----SGN--ANVEAAVNWVVEHENDPDIDEMPMVPVSGGGGASKSSLTPEEIKLKAQ 188 (293)
Q Consensus 116 ~~l~~L~~MGF~~~~a~kAL~~----tgn--~~~E~A~~WL~~h~dD~didep~~~~~~~~~~~~kk~lT~EEk~~k~~ 188 (293)
..+...++|||+......++.. ||. .+++.-+.=|+...++. ..+.. +.. + ...++++||...+|+
T Consensus 29 ~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e~~--~~~~~-~~~-s---~~~~~s~eEqLrrLq 100 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQKDS--MQDES-SQT-S---LQKEISTEEQLRRLQ 100 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSC--CCCCS-SCC-C---CCCCCCHHHHGGGTC
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHhh--ccccc-ccc-c---ccCCCCHHHHHHHHH
Confidence 3578889999999998877654 554 57888888888766653 22111 111 1 235778877655443
No 163
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=77.01 E-value=3.2 Score=29.75 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.4
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 113 VDKELLKELEAMGFPVARATRALHYS 138 (293)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~t 138 (293)
+..++++.|+.+||+...|.+|+...
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44689999999999999999998754
No 164
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=76.57 E-value=3.1 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=28.5
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+...++|..||+.+.....-..|... |.+ . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~---~----k~~~C~~~ 46 (46)
T 2em2_A 9 GEKPFKCKECGKAFRQNIHLASHLRI--HTG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH--HCC---C----CSSCSSCC
T ss_pred CCCCEECCcCCchhCCHHHHHHHHHH--hCC---C----CCCCCCCC
Confidence 34568999999999999999999654 642 1 34888765
No 165
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=76.49 E-value=2.1 Score=37.66 Aligned_cols=37 Identities=35% Similarity=0.435 Sum_probs=30.8
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEH 153 (293)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h 153 (293)
.+|..|-+ -|.+---|.+||..++| |++.|++||-..
T Consensus 5 ~~VKeLRe~TGagmmdCKkAL~e~~G-D~ekAie~LR~k 42 (196)
T 1aip_C 5 ELIKKLREATGAGMMDVKRALEDAGW-DEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHHc
Confidence 45666754 48899999999999987 999999999653
No 166
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=76.13 E-value=2 Score=26.85 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=27.4
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
...++|..||+.+.....-..|... |.. ...|.|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~~-------~k~~~C~~C 46 (46)
T 2ytt_A 10 EKPYQCSECGKSFSGSYRLTQHWIT--HTR-------EKPSGPSSG 46 (46)
T ss_dssp CCTTCCSSSCCCCSSHHHHHHHHTH--HHH-------CCCCSCCCC
T ss_pred CCCeeCCCCCcccCCHHHHHHHHHH--cCC-------CCCCCCCCC
Confidence 3457899999999999888888654 542 134888877
No 167
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=76.03 E-value=0.86 Score=37.42 Aligned_cols=22 Identities=18% Similarity=0.587 Sum_probs=12.0
Q ss_pred eeecccCCccccCHHHHHHHHH
Q 022703 5 SLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
.+.|..||..+.....-..|..
T Consensus 105 ~~~C~~C~~~f~~~~~l~~H~~ 126 (190)
T 2i13_A 105 PYACPECGKSFSQLAHLRAHQR 126 (190)
T ss_dssp CEECTTTCCEESSHHHHHHHHH
T ss_pred CCcCCCCCCccCCHHHHHHHHH
Confidence 3455555555555555555543
No 168
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=75.97 E-value=1.4 Score=35.01 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=29.0
Q ss_pred ecccCCccc----cCHHHHHHHHHHhccCC---CCcchhhhhccccCCCCC
Q 022703 7 KCGDCGALL----RSVQEAQEHAELTSHSN---FSESTEAVLNLVCATCGK 50 (293)
Q Consensus 7 kC~~Cg~v~----~~~~~aq~ha~~TgH~~---F~e~~d~i~~~~C~~Cg~ 50 (293)
.|..||.|+ .++.-|..|.+.|||-- |.-. .....|=.|+.
T Consensus 36 lCL~CG~VGC~r~s~~~HA~~H~~~t~Hpl~~S~~~~---~~~vwcY~cd~ 83 (102)
T 2ida_A 36 ICRTCGHVGCCDDSPHKHATRHFHATGHPIIEGYDPP---EGWGWCYVDEV 83 (102)
T ss_dssp EESSSCCCCBCTTSTTCHHHHHHHHHCCCEEEESSSC---SCEEEETTTTE
T ss_pred eeeEcCCCcccCCCccHHHHHHHhccCCCEEEEEecC---CCCEEEcCCCc
Confidence 588899986 35677999999999983 4321 13356766765
No 169
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=75.80 E-value=2.1 Score=39.71 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=33.1
Q ss_pred cCHHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 022703 113 VDKELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVE 152 (293)
Q Consensus 113 ~~~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~WL~~ 152 (293)
++..+|..|-+ -|.+.--|++||..++| |++.|++||-.
T Consensus 3 ~ta~~VKeLRe~TGagmmdCKKAL~e~~G-D~ekAie~LR~ 42 (291)
T 1xb2_B 3 SSKELLMKLRRKTGYSFINCKKALETCGG-DLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34567777765 48999999999999987 99999999986
No 170
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=75.78 E-value=1.1 Score=33.54 Aligned_cols=22 Identities=18% Similarity=0.549 Sum_probs=12.5
Q ss_pred eeecc--cCCccccCHHHHHHHHH
Q 022703 5 SLKCG--DCGALLRSVQEAQEHAE 26 (293)
Q Consensus 5 ~LkC~--~Cg~v~~~~~~aq~ha~ 26 (293)
.++|. .||..+.....-..|..
T Consensus 36 ~~~C~~~~C~~~f~~~~~l~~H~~ 59 (119)
T 2jp9_A 36 PYQCDFKDCERRFSRSDQLKRHQR 59 (119)
T ss_dssp CEECCSTTCCCEESSHHHHHHHHH
T ss_pred CccCCCCCCcCccCCHHHHHHHHH
Confidence 35565 46666665555555544
No 171
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=75.76 E-value=2.1 Score=33.00 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=9.9
Q ss_pred eeecccCCcccc
Q 022703 5 SLKCGDCGALLR 16 (293)
Q Consensus 5 ~LkC~~Cg~v~~ 16 (293)
.-+|..||..+.
T Consensus 8 ~~~~PlCG~~L~ 19 (95)
T 2k5c_A 8 MAKCPICGSPLK 19 (95)
T ss_dssp CEECSSSCCEEC
T ss_pred cccCCcCCCccC
Confidence 358999999984
No 172
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=75.33 E-value=1.3 Score=27.63 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=27.7
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+...++|..||+.+.....-..|.. .|.+ . ..|.|+.|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C 46 (46)
T 2ytg_A 9 GEKPFKCGECGKSYNQRVHLTQHQR--VHTG---E----KPSGPSSG 46 (46)
T ss_dssp SCCSEECTTTCCEESSSHHHHTTGG--GGSS---C----CSSCSCCC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHH--HcCC---C----CCCCCCCC
Confidence 3456889999999988888888853 3542 1 34888877
No 173
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=75.20 E-value=3 Score=25.93 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=28.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|..||+.+.....-..|.. .|.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~~---~----~~~~C~~~ 46 (46)
T 2ep3_A 9 GEKPYRCAECGKAFTDRSNLFTHQK--IHTG---E----KPSGPSSG 46 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHT--TTTT---S----CCCCTTCC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHH--HcCC---C----CCCCCCCC
Confidence 3456899999999999999999974 3642 1 34888765
No 174
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=74.85 E-value=2 Score=37.93 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=25.2
Q ss_pred cCHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 022703 113 VDKELLKELEAMGFPVARATRALHYSGN 140 (293)
Q Consensus 113 ~~~~~l~~L~~MGF~~~~a~kAL~~tgn 140 (293)
.+.+.|..|++|||+.+.+..||...|.
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~ 195 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGV 195 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 4688999999999999999999988765
No 175
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=72.82 E-value=4.1 Score=32.14 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=33.0
Q ss_pred cccCHHHHHHHH-hCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 022703 111 PEVDKELLKELE-AMGFPVARATRALHYSGNANVEAAVNWV 150 (293)
Q Consensus 111 ~~~~~~~l~~L~-~MGF~~~~a~kAL~~tgn~~~E~A~~WL 150 (293)
..++++.++.++ .+|.|+..|.+||..++| |+-.|+-+|
T Consensus 62 ~~i~~edi~lv~~q~~vs~~~A~~aL~~~~g-Div~Ai~~L 101 (102)
T 1tr8_A 62 MEIPEDDIELVMNQTGASREDATRALQETGG-DLAEAIMRL 101 (102)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHHHHHHTTT-CHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHh
Confidence 467888888877 489999999999999987 888888765
No 176
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=72.22 E-value=2.7 Score=30.35 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=10.1
Q ss_pred eeccc--CCccccCHHHHHHHHH
Q 022703 6 LKCGD--CGALLRSVQEAQEHAE 26 (293)
Q Consensus 6 LkC~~--Cg~v~~~~~~aq~ha~ 26 (293)
+.|.. ||+.+.....-+.|..
T Consensus 16 ~~C~~~~C~~~f~~~~~l~~H~~ 38 (100)
T 2ebt_A 16 HYCDYPGCTKVYTKSSHLKAHLR 38 (100)
T ss_dssp EECCSSSCCCEESCHHHHHHHHH
T ss_pred eEcCCCCCCCcccCHHHHHHHHH
Confidence 34443 5555555555555543
No 177
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=72.20 E-value=2.1 Score=30.23 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=9.6
Q ss_pred eeccc--CCccccCHHHHHHHH
Q 022703 6 LKCGD--CGALLRSVQEAQEHA 25 (293)
Q Consensus 6 LkC~~--Cg~v~~~~~~aq~ha 25 (293)
..|.. ||..+.....-..|.
T Consensus 6 ~~C~~~~C~~~f~~~~~l~~H~ 27 (89)
T 2wbs_A 6 HTCDYAGCGKTYTKSSHLKAHL 27 (89)
T ss_dssp EECCSTTTCCEESSHHHHHHHH
T ss_pred eeCCCCCCCCcCCCHHHHHHHH
Confidence 34444 555554444444444
No 178
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=72.08 E-value=2.5 Score=31.28 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=9.6
Q ss_pred cceeecccCCcccc
Q 022703 3 GVSLKCGDCGALLR 16 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~ 16 (293)
.+...|.+||..+.
T Consensus 26 ~v~Y~C~~CG~~~e 39 (70)
T 1twf_L 26 TLKYICAECSSKLS 39 (70)
T ss_dssp CCCEECSSSCCEEC
T ss_pred eEEEECCCCCCcce
Confidence 45667888887753
No 179
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=71.70 E-value=10 Score=27.26 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcHHHH-HHHHHHHHHHH
Q 022703 223 AKRIEEENERKRILALRKAEKEEE-KRAREKIRQKL 257 (293)
Q Consensus 223 ~k~~~ee~e~k~~~e~rrrEK~ee-~~ar~rir~qI 257 (293)
.+...+-.+..+.++++|++|-.. ...|++||+.|
T Consensus 11 ~kke~E~~eAlrq~Ee~Rk~Kh~kME~ERE~mRQ~I 46 (63)
T 3rk3_E 11 AKKFEEAQEALRQAEEERKAKYAKMEAEREAVRQGI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777778888877543 45688999999
No 180
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=69.35 E-value=3.8 Score=32.69 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=28.4
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCCCccccccccc
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRK 63 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~~~~e~~~a~K 63 (293)
..+|..||+.+.....-..|... |++ ...|.|+.||+.|.+......+.+
T Consensus 50 ~~~C~~C~k~F~~~~~L~~H~~~--H~~-------~k~~~C~~C~k~F~~~~~L~~H~~ 99 (133)
T 2lt7_A 50 KYPCRYCEKVFPLAEYRTKHEIH--HTG-------ERRYQCLACGKSFINYQFMSSHIK 99 (133)
T ss_dssp CEECSSSSCEESSHHHHHHHHHH--HHT-------CCCEEESSSCCEESSHHHHHHHHH
T ss_pred CeeCCccCeecccccchhhhccc--cCC-------CccccCCCCCCCcCCHHHHHHHhH
Confidence 45677777777776666666532 432 123666666666655444444443
No 181
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=69.08 E-value=1.6 Score=30.43 Aligned_cols=20 Identities=20% Similarity=0.619 Sum_probs=12.1
Q ss_pred eec--ccCCccccCHHHHHHHH
Q 022703 6 LKC--GDCGALLRSVQEAQEHA 25 (293)
Q Consensus 6 LkC--~~Cg~v~~~~~~aq~ha 25 (293)
.+| ..||..+.....-+.|.
T Consensus 2 ~~C~~~~C~~~f~~~~~l~~H~ 23 (85)
T 2j7j_A 2 YVCHFENCGKAFKKHNQLKVHQ 23 (85)
T ss_dssp EECCSTTCCCEESSHHHHHHHH
T ss_pred ccCCCCCCCcccCCHHHHHHHH
Confidence 356 66666666666666665
No 182
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.97 E-value=5 Score=23.75 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=20.4
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
....+|..||+.+.....-..|... .|.
T Consensus 7 ~k~~~C~~C~k~f~~~~~L~~H~~~-~H~ 34 (37)
T 2elm_A 7 GHLYYCSQCHYSSITKNCLKRHVIQ-KHS 34 (37)
T ss_dssp SCEEECSSSSCEEECHHHHHHHHHH-HTC
T ss_pred CcCeECCCCCcccCCHHHHHHHHHH-Hcc
Confidence 4567899999999888888888333 343
No 183
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=68.10 E-value=5.3 Score=25.51 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=24.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~ 32 (293)
+...++|..||+.|.....-+.|... .|..
T Consensus 4 ~~kp~~C~~C~k~F~~~~~L~~H~~~-~H~~ 33 (48)
T 3iuf_A 4 RDKPYACDICGKRYKNRPGLSYHYAH-SHLA 33 (48)
T ss_dssp TTSCEECTTTCCEESSHHHHHHHHHH-SSCC
T ss_pred CCcCEECCCcCcccCCHHHHHHHhhh-hcCC
Confidence 45568999999999999999999874 4654
No 184
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=67.40 E-value=2.1 Score=35.02 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=11.3
Q ss_pred eecccCCccccCHHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
++|..||..+.....-+.|..
T Consensus 50 ~~C~~C~~~f~~~~~l~~H~~ 70 (190)
T 2i13_A 50 YKCPECGKSFSDKKDLTRHQR 70 (190)
T ss_dssp EECTTTCCEESSHHHHHHHHH
T ss_pred ccCCCcCchhCCHHHHHHHHH
Confidence 455555555555555555543
No 185
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=66.62 E-value=3.2 Score=22.84 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.1
Q ss_pred eecccCCccccCHHHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
.+|..||..+.....-..|...
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~ 24 (30)
T 1paa_A 3 YACGLCNRAFTRRDLLIRHAQK 24 (30)
T ss_dssp SBCTTTCCBCSSSHHHHHHHTT
T ss_pred cCCcccCcccCChHHHHHHHHH
Confidence 5788999988888777777544
No 186
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.48 E-value=5.5 Score=22.73 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=20.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHH
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
+....+|..||+.+.....-+.|...
T Consensus 4 ~~k~~~C~~C~k~f~~~~~L~~H~~~ 29 (35)
T 2elx_A 4 GSSGYVCALCLKKFVSSIRLRSHIRE 29 (35)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHH
T ss_pred CCCCeECCCCcchhCCHHHHHHHHHH
Confidence 34567899999999888888888653
No 187
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=64.53 E-value=5.6 Score=21.42 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=18.4
Q ss_pred eeecccCCccccCHHHHHHHHH
Q 022703 5 SLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
..+|..||+.+.....-..|..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~ 24 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKHLR 24 (27)
T ss_dssp CEECSSSSCEESSHHHHHHHHH
T ss_pred CccCCCcChhhCCHHHHHHHHH
Confidence 4689999999998888888864
No 188
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=64.15 E-value=2.2 Score=33.93 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=30.9
Q ss_pred ecccCCccccC---HHHHHHHHHHhccCCCCcchhhhhccccCCCCC
Q 022703 7 KCGDCGALLRS---VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (293)
Q Consensus 7 kC~~Cg~v~~~---~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~ 50 (293)
-|..||.|+=| +.-|..|...|||..|-... .....|=.|+.
T Consensus 38 ~CL~CG~vgCgr~~~~HA~~H~~~t~H~~~~~l~--~~~vwCy~cd~ 82 (109)
T 3c5k_A 38 VCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYI--DLSAWCYYCQA 82 (109)
T ss_dssp EETTTCCEEECTTTTCHHHHHHHHHCCCEEEETT--TCCEEETTTTE
T ss_pred eeeecCccccCCCcChHHHHHhcccCCCEEEECC--CCCEEECCCCC
Confidence 48889999844 66799999999999875442 12357777765
No 189
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=64.13 E-value=5.2 Score=21.64 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=18.4
Q ss_pred eeecccCCccccCHHHHHHHHH
Q 022703 5 SLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
..+|..||+.+.....-..|..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~ 24 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQMETHYR 24 (28)
T ss_dssp SEECSSSCCEESCHHHHHHHHT
T ss_pred CccCCCCCcccCCHHHHHHHHH
Confidence 4689999999998888888864
No 190
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.12 E-value=5.5 Score=22.95 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=18.6
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
....+|..||+.+.....-+.|..
T Consensus 7 ~~~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elr_A 7 GKTHLCDMCGKKFKSKGTLKSHKL 30 (36)
T ss_dssp CSSCBCTTTCCBCSSHHHHHHHHH
T ss_pred CCCeecCcCCCCcCchHHHHHHHH
Confidence 445788889988888888788764
No 191
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.76 E-value=6.5 Score=22.78 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=19.8
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
...++|..||+.+.....-..|..
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elq_A 7 GKPFKCSLCEYATRSKSNLKAHMN 30 (36)
T ss_dssp CCSEECSSSSCEESCHHHHHHHHH
T ss_pred CCCccCCCCCchhCCHHHHHHHHH
Confidence 456789999999998888888864
No 192
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.49 E-value=6.4 Score=22.81 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=19.6
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
....+|..||+.+.....-+.|..
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2els_A 7 GKIFTCEYCNKVFKFKHSLQAHLR 30 (36)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHH
T ss_pred CCCEECCCCCceeCCHHHHHHHHH
Confidence 456789999999988888888865
No 193
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.30 E-value=0.51 Score=32.16 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=22.7
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRS 54 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~~ 54 (293)
.....|..||..+.....-+. ...|.|+.||+.+.+
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~----------------~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR----------------RKTPMCEKCRKDSCQ 51 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC----------------SSSCCCHHHHHTCSC
T ss_pred CCCeeCCcccchhCCHHHhCc----------------CCCCCCCCCChhhcC
Confidence 456789999988843221111 234899999886533
No 194
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=62.78 E-value=6.5 Score=22.55 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=19.2
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
....+|..||+.+.....-..|..
T Consensus 5 ~k~~~C~~C~k~f~~~~~l~~H~~ 28 (35)
T 1srk_A 5 KRPFVCRICLSAFTTKANCARHLK 28 (35)
T ss_dssp CSCEECSSSCCEESSHHHHHHHHG
T ss_pred CcCeeCCCCCcccCCHHHHHHHHH
Confidence 456789999999988888888864
No 195
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=62.52 E-value=4.8 Score=21.48 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=16.1
Q ss_pred eecccCCccccCHHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
.+|..||+.+.....-..|..
T Consensus 2 ~~C~~C~k~f~~~~~l~~H~~ 22 (27)
T 1znf_A 2 YKCGLCERSFVEKSALSRHQR 22 (27)
T ss_dssp CBCSSSCCBCSSHHHHHHHGG
T ss_pred ccCCCCCCcCCCHHHHHHHHH
Confidence 478888888888777777753
No 196
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=62.27 E-value=6 Score=23.04 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=16.6
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
....+|..||+.+.....-..|..
T Consensus 9 ~k~~~C~~C~k~f~~~~~l~~H~~ 32 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSRSDHLALHRK 32 (37)
T ss_dssp SSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred CCCccCCCCCcccCcHHHHHHHHH
Confidence 345678888888777777777743
No 197
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=62.03 E-value=5.6 Score=21.44 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=18.4
Q ss_pred eecccCCccccCHHHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
.+|..||..+.....-..|...
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~ 24 (29)
T 1ard_A 3 FVCEVCTRAFARQEHLKRHYRS 24 (29)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHH
T ss_pred eECCCCCcccCCHHHHHHHHHH
Confidence 5799999999988888888653
No 198
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=61.61 E-value=7.1 Score=23.21 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=21.7
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+...++|..||+.+.....-..|.. .|.
T Consensus 3 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 30 (39)
T 1njq_A 3 PPRSYTCSFCKREFRSAQALGGHMN--VHR 30 (39)
T ss_dssp CSSSEECTTTCCEESSHHHHHHHHH--TTC
T ss_pred CCCceECCCCCcccCCHHHHHHHHH--HcC
Confidence 3456789999999998888888864 354
No 199
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=61.54 E-value=3.5 Score=29.07 Aligned_cols=40 Identities=15% Similarity=0.403 Sum_probs=30.5
Q ss_pred ceeecc--cCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 4 VSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 4 ~~LkC~--~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
..+.|. .||..+.....-+.|... |.. ...|.|+.||+.+
T Consensus 3 k~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~C~~~f 44 (90)
T 1a1h_A 3 RPYACPVESCDRRFSQSGSLTRHIRI--HTG-------QKPFQCRICMRNF 44 (90)
T ss_dssp CCEECCSSSCCCEESSHHHHHHHHHH--HHC-------CCCEECTTTCCEE
T ss_pred CceECCCCCCCCccCCHHHHHHHHHH--hCC-------CCCccCCCCCccc
Confidence 457898 699999999999999764 432 1348899998864
No 200
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=61.47 E-value=5.3 Score=21.65 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=17.5
Q ss_pred eeecccCCccccCHHHHHHHHH
Q 022703 5 SLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
...|..||..+.....-..|..
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 1rik_A 2 KFACPECPKRFMRSDHLTLHIL 23 (29)
T ss_dssp CEECSSSSCEESCSHHHHHHHT
T ss_pred CccCCCCCchhCCHHHHHHHHH
Confidence 3679999999888888888864
No 201
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.84 E-value=7.5 Score=22.49 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=18.9
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
...++|..||+.+.....-..|..
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elv_A 7 GLLYDCHICERKFKNELDRDRHML 30 (36)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHT
T ss_pred CCCeECCCCCCccCCHHHHHHHHH
Confidence 456789999999988888788854
No 202
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=60.51 E-value=4.8 Score=27.73 Aligned_cols=41 Identities=27% Similarity=0.596 Sum_probs=32.6
Q ss_pred cceeeccc--CCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCC
Q 022703 3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~--Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~ 52 (293)
...++|.. ||+.+.....-+.|... |.. ...|.|+.||+.|
T Consensus 36 ~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~-------~~~~~C~~C~k~F 78 (79)
T 2dlk_A 36 QKSFSCPEPACGKSFNFKKHLKEHMKL--HSD-------TRDYICEFSGPSS 78 (79)
T ss_dssp CCCEECSCTTTCCEESSHHHHHHHHHH--HHT-------SCCCSCCSSSCCC
T ss_pred CCCeECCCCCCcCccCCHHHHHHHHHH--hCC-------CCCeeCCCCCCCC
Confidence 34679999 99999999999999864 642 2449999999863
No 203
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.19 E-value=24 Score=24.89 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=32.6
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 022703 115 KELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (293)
Q Consensus 115 ~~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD 156 (293)
.++|.+.+. .|-+...|...|..+++ +++.|++-.|++.+.
T Consensus 16 ~e~i~qF~~iTg~~~~~A~~~Le~~~W-nLe~Av~~ff~~~~~ 57 (62)
T 2dal_A 16 KGLIQQFTTITGASESVGKHMLEACNN-NLEMAVTMFLDGGGS 57 (62)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHTTTS-CHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHcCCCC
Confidence 345666654 68999999999988876 999999998887643
No 204
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=60.03 E-value=5.7 Score=21.63 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.7
Q ss_pred eeecccCCccccCHHHHHHHH
Q 022703 5 SLKCGDCGALLRSVQEAQEHA 25 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha 25 (293)
..+|..||+.+.....-..|.
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~ 23 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLASMQAHM 23 (27)
T ss_dssp TEEETTTTEEESCHHHHHHHH
T ss_pred CcCCCCCCcccCCHHHHHHHH
Confidence 468999999998888888885
No 205
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=59.77 E-value=2 Score=34.63 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=41.1
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCC-------------------CC-----cchhhhhccccCCCCCCCCCcccccc
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSN-------------------FS-----ESTEAVLNLVCATCGKPCRSKTETDL 60 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~-------------------F~-----e~~d~i~~~~C~~Cg~~~~~~~e~~~ 60 (293)
.+.|..|+..+.+...++.|-.-.-|.. |. ........|.|..|+..|.|......
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~~ 111 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAES 111 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHHH
Confidence 3689999999999999998884222321 10 01122345889999988777666666
Q ss_pred ccccccc
Q 022703 61 HRKRTGH 67 (293)
Q Consensus 61 a~K~t~f 67 (293)
|...-.|
T Consensus 112 H~~gk~H 118 (127)
T 1zu1_A 112 HYIGKTH 118 (127)
T ss_dssp HHTSHHH
T ss_pred HHCCHHH
Confidence 6554443
No 206
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=59.68 E-value=7.3 Score=20.84 Aligned_cols=23 Identities=26% Similarity=0.693 Sum_probs=18.6
Q ss_pred eeecccCCccccCHHHHHHHHHH
Q 022703 5 SLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
..+|..||+.+.....-..|...
T Consensus 2 ~~~C~~C~k~f~~~~~l~~H~~~ 24 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNLKRHLRI 24 (29)
T ss_dssp CEECTTTSCEESCHHHHHHHHHH
T ss_pred CccCCCCCCccCChhHHHHHHHH
Confidence 36899999999888888888643
No 207
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.11 E-value=7 Score=22.70 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=19.2
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
....+|..||+.+.....-..|..
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~ 30 (37)
T 2elo_A 7 GRSYSCPVCEKSFSEDRLIKSHIK 30 (37)
T ss_dssp CCCCEETTTTEECSSHHHHHHHHH
T ss_pred CCCcCCCCCCCccCCHHHHHHHHH
Confidence 445789999999988888888864
No 208
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=59.09 E-value=7.5 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=18.6
Q ss_pred eeecccCCccccCHHHHHHHHH
Q 022703 5 SLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
..+|..||..+.....-..|..
T Consensus 3 ~~~C~~C~~~f~~~~~l~~H~~ 24 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSKMRHLE 24 (30)
T ss_dssp CEECTTTCCEESCHHHHHHHHH
T ss_pred CccCCCCCcccCCHHHHHHHHH
Confidence 4689999999998888888864
No 209
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=59.03 E-value=4.8 Score=32.11 Aligned_cols=10 Identities=30% Similarity=1.029 Sum_probs=6.9
Q ss_pred eecccCCccc
Q 022703 6 LKCGDCGALL 15 (293)
Q Consensus 6 LkC~~Cg~v~ 15 (293)
.+|.+||.+|
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 4677777666
No 210
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=58.92 E-value=9.1 Score=24.87 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.5
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
...++|..||..+.....-+.|... .|.
T Consensus 28 ~~~~~C~~C~~~f~~~~~l~~H~~~-~H~ 55 (60)
T 2adr_A 28 EKPYPCGLCNRAFTRRDLLIRHAQK-IHS 55 (60)
T ss_dssp SCSEECTTTCCEESSHHHHHHHHTT-TSC
T ss_pred CCCccCCCCCCccCCHHHHHHHHHH-HcC
Confidence 4468999999999999999999866 554
No 211
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.55 E-value=9.3 Score=21.90 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.0
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
....+|..||+.+.....-..|..
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~~H~~ 30 (36)
T 2elt_A 7 GKPYKCPQCSYASAIKANLNVHLR 30 (36)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHH
T ss_pred CCCCCCCCCCcccCCHHHHHHHHH
Confidence 446789999999988888888864
No 212
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=58.11 E-value=6.9 Score=30.48 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.8
Q ss_pred ceeecccCCccccCHHHHHHHHHH
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
|..+|..||..+.....-+.|...
T Consensus 2 ~~~~C~~C~~~f~~~~~L~~H~~~ 25 (155)
T 2gli_A 2 TDCRWDGCSQEFDSQEQLVHHINS 25 (155)
T ss_dssp CBCCBTTCCCBCSCHHHHHHHHHH
T ss_pred CcCCcCCCccccCCHHHHHHHHHh
Confidence 456899999999999999999874
No 213
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=56.94 E-value=6.2 Score=21.29 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=17.4
Q ss_pred eecccCCccccCHHHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
.+|..||..+.....-..|...
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~ 24 (30)
T 1klr_A 3 YQCQYCEFRSADSSNLKTHIKT 24 (30)
T ss_dssp CCCSSSSCCCSCSHHHHHHHHH
T ss_pred ccCCCCCCccCCHHHHHHHHHH
Confidence 5799999998888877777653
No 214
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.59 E-value=12 Score=22.99 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=28.5
Q ss_pred Ccceeecc--cCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 2 AGVSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 2 ~~~~LkC~--~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
+....+|. .||+.+.....-..|.. .|.. . ..|.|+.|
T Consensus 9 ~~k~~~C~~~~C~k~f~~~~~L~~H~~--~H~~---~----k~~~C~~C 48 (48)
T 2ent_A 9 GEKPFACTWPGCGWRFSRSDELSRHRR--SHSG---V----KPSGPSSG 48 (48)
T ss_dssp CCCCEECCSSSCCCEESSHHHHHHHHT--TSCC---C----CSCSSCCC
T ss_pred CCCCeECCCCCCCCccCCHHHHHHHHH--HhCC---C----CCCCCCCC
Confidence 34568998 89999999999889964 3653 1 34889887
No 215
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=55.24 E-value=11 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=20.8
Q ss_pred CcceeecccCCccccCHHHHHHHHHH
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
+....+|..||+.+.....-..|...
T Consensus 8 ~~~~~~C~~C~k~f~~~~~l~~H~~~ 33 (42)
T 2epc_A 8 GETPYLCGQCGKSFTQRGSLAVHQRS 33 (42)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred CCCCeECCCCCcccCCHHHHHHHhhh
Confidence 34568899999999998888888653
No 216
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=55.14 E-value=7.9 Score=33.06 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.7
Q ss_pred HHHHHHhCC-CCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 022703 117 LLKELEAMG-FPVARATRALHYSGNANVEAAVNWVVE 152 (293)
Q Consensus 117 ~l~~L~~MG-F~~~~a~kAL~~tgn~~~E~A~~WL~~ 152 (293)
-+..|++.| |....|..||+.+|+ +++.|+-=|-.
T Consensus 105 K~~eL~s~G~~~~~~~~~aL~~~~G-dv~~Al~eLqr 140 (162)
T 4dbg_B 105 KVQELQSLGFGPEEGSLQALFQHGG-DVSRALTELQR 140 (162)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHhcCCchHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 378899999 677999999999988 99999986533
No 217
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=54.98 E-value=9 Score=24.00 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=17.5
Q ss_pred cceeecccCCccccCHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHA 25 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha 25 (293)
....+|+.||+.+.....-..|.
T Consensus 6 ekp~~C~~CgK~F~~~s~L~~H~ 28 (36)
T 1fv5_A 6 PARFMCLPCGIAFSSPSTLEAHQ 28 (36)
T ss_dssp CCCCEETTTTEECSCHHHHHHHH
T ss_pred ccCeECCCCCCccCCHhHccCcC
Confidence 34568888888888877777775
No 218
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.40 E-value=10 Score=22.05 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=17.8
Q ss_pred cceeecccCCccccCH-HHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSV-QEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~-~~aq~ha~ 26 (293)
...++|..||+.+... ..-..|..
T Consensus 7 ~k~~~C~~C~k~f~~~~~~L~~H~~ 31 (37)
T 2elp_A 7 GRAMKCPYCDFYFMKNGSDLQRHIW 31 (37)
T ss_dssp CCCEECSSSSCEECSSCHHHHHHHH
T ss_pred CCCeECCCCChhhccCHHHHHHHHH
Confidence 3457888888888877 77777753
No 219
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=54.03 E-value=14 Score=25.37 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHcHHHH-HHHHHHHHHHHH
Q 022703 226 IEEENERKRILALRKAEKEEE-KRAREKIRQKLE 258 (293)
Q Consensus 226 ~~ee~e~k~~~e~rrrEK~ee-~~ar~rir~qIe 258 (293)
..+-.+..+.++++|++|-.. ...|+++|+.|.
T Consensus 11 e~E~~eAlreaEe~Rk~Kh~kmE~eRE~mRq~IR 44 (49)
T 1kil_E 11 EEERQEALRQAEEERKAKYAKMEAEREVMRQGIR 44 (49)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777443 456889999984
No 220
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=54.00 E-value=41 Score=23.33 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=34.4
Q ss_pred cccCHHHHHHHH--hCCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 022703 111 PEVDKELLKELE--AMGFPVARATRALHYSGNANVEAAVNWVVEHEND 156 (293)
Q Consensus 111 ~~~~~~~l~~L~--~MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD 156 (293)
..+.++++.+.. =-|-|++...+-|..|+ -++..|+|-|++..|+
T Consensus 6 ~~vPe~li~q~q~VLqgksR~vIirELqrTn-LdVN~AvNNlLsRDd~ 52 (53)
T 2qho_B 6 SVIPEELISQAQVVLQGKSRSVIIRELQRTN-LDVNLAVNNLLSRDDE 52 (53)
T ss_dssp GGSCHHHHHHHHHHSTTCCHHHHHHHHHHTT-TCHHHHHHHHHC----
T ss_pred ccCcHHHHHHHHHHhcCCcHHHHHHHHHHhC-ccHHHHHHHHhccccC
Confidence 456677776654 57999999999999995 5999999999987654
No 221
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.89 E-value=11 Score=23.11 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=19.9
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
...++|..||+.+.....-..|..
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~ 33 (44)
T 2epv_A 10 EKPYECNECGKAFIWKSLLIVHER 33 (44)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHG
T ss_pred CcCeECCCCCcccCchHHHHHHHh
Confidence 456789999999998888888864
No 222
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=53.82 E-value=4.9 Score=27.76 Aligned_cols=37 Identities=16% Similarity=0.484 Sum_probs=30.7
Q ss_pred cceeeccc--CCccccCHHHHHHHHHHhccCCCCcchhhhhccccCC---CCCC
Q 022703 3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT---CGKP 51 (293)
Q Consensus 3 ~~~LkC~~--Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~---Cg~~ 51 (293)
...++|.. ||..+.....-..|... |.. |.|+. ||+.
T Consensus 29 ~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~----------~~C~~~~~C~~~ 70 (85)
T 2j7j_A 29 QLPYECPHEGCDKRFSLPSRLKRHEKV--HAG----------YPCKKDDSCSFV 70 (85)
T ss_dssp TCCEECCSTTCCCEESSHHHHHHHHHH--HHS----------EECCSCSSCCCE
T ss_pred CCCeeCCCCCCcCccCCHHHHHHHHHH--hCC----------CCCCCCCCCCCc
Confidence 34579988 99999999999999854 554 89999 9985
No 223
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.78 E-value=11 Score=22.97 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=22.9
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|... |.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 36 (46)
T 2eow_A 9 GEKPYKCNECGKAFRARSSLAIHQAT--HS 36 (46)
T ss_dssp CCCCEECTTSCCEESSHHHHHHHHHH--HC
T ss_pred CCCCeeccccCChhcCHHHHHHHHHH--cC
Confidence 34568999999999999999999753 64
No 224
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=53.50 E-value=17 Score=23.51 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=29.7
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhc
Q 022703 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHE 154 (293)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~ 154 (293)
+++.+.++ -|.+...|...|..++. +++.|++=.|++.
T Consensus 7 ~~i~~F~~iTg~~~~~A~~~L~~~~w-dle~Ai~~ff~~~ 45 (46)
T 1v92_A 7 DALREFVAVTGAEEDRARFFLESAGW-DLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTS-CSHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCC-CHHHHHHHHHcCC
Confidence 44555553 58899999999988876 8999999888753
No 225
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=53.20 E-value=8.9 Score=22.08 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=18.2
Q ss_pred eecccCCccccCHHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
.+|..||+.+.....-..|..
T Consensus 3 ~~C~~C~k~F~~~~~L~~H~~ 23 (33)
T 1rim_A 3 FACPECPKRFMRSDHLSKHIT 23 (33)
T ss_dssp CCCSSSCCCCSSHHHHHHHHH
T ss_pred ccCCCCCchhCCHHHHHHHHH
Confidence 579999999999888888864
No 226
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.81 E-value=14 Score=26.28 Aligned_cols=38 Identities=21% Similarity=0.491 Sum_probs=27.0
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
...+.|..|+..+. ..+-+.|...+| ..-|.|+.||+.
T Consensus 15 ~r~~~C~~C~~~~~-~~~L~~H~~~c~----------~~~~~C~~C~~~ 52 (75)
T 2d9k_A 15 LRLAVCQHCDLELS-ILKLKEHEDYCG----------ARTELCGNCGRN 52 (75)
T ss_dssp CCCEECSSSCCEEC-HHHHHHHHHHHH----------HCEEECSSSCCE
T ss_pred CcccCCcccChHhh-HHHHHHHHhHcC----------CCceEcccCCCc
Confidence 45688999999995 666667763322 133799999984
No 227
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=52.24 E-value=13 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.570 Sum_probs=22.9
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|... |.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~--H~ 36 (46)
T 2emj_A 9 GEKPFECAECGKSFSISSQLATHQRI--HT 36 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHHH--HT
T ss_pred CCCCEECCCCCcccCCHHHHHHHHHH--hC
Confidence 34568999999999999999999754 64
No 228
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.09 E-value=13 Score=22.92 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=22.6
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|... |.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 36 (46)
T 2em4_A 9 GQRPYECIECGKAFKTKSSLICHRRS--HT 36 (46)
T ss_dssp CSSSEECSSSCCEESSHHHHHHHHHH--HS
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHHh--cC
Confidence 34568999999999999999999653 64
No 229
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.07 E-value=12 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=22.6
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-+.|.. .|.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~--~H~ 36 (46)
T 2ytp_A 9 GERHYECSECGKAFARKSTLIMHQR--IHT 36 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHT--TTS
T ss_pred CCCCeECCcCCcccCCHHHHHHHHH--HhC
Confidence 3456899999999999999999964 364
No 230
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=52.01 E-value=12 Score=22.39 Aligned_cols=28 Identities=18% Similarity=0.538 Sum_probs=22.3
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-+.|.. .|.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 34 (42)
T 2el5_A 7 GENPYECSECGKAFNRKDQLISHQR--THA 34 (42)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHG--GGC
T ss_pred CCCCccCCCcChhhCCHHHHHHHHH--hcC
Confidence 3456899999999999999899964 364
No 231
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.92 E-value=12 Score=22.95 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=22.6
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-+.|.. .|.
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~--~H~ 36 (46)
T 2emi_A 9 GERHYECSECGKAFIQKSTLSMHQR--IHR 36 (46)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHG--GGC
T ss_pred CCCCCCCCCCCcccCCHHHHHHHHh--HhC
Confidence 3456899999999999999999964 364
No 232
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.41 E-value=12 Score=22.31 Aligned_cols=25 Identities=12% Similarity=0.425 Sum_probs=20.3
Q ss_pred cceeecccCCccccCHHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
....+|..||+.+.....-..|...
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~ 32 (42)
T 2yte_A 8 EKPYSCAECKETFSDNNRLVQHQKM 32 (42)
T ss_dssp CCSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred CCCeECCCCCCccCCHHHHHHHHHH
Confidence 4557899999999998888888654
No 233
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.28 E-value=13 Score=22.77 Aligned_cols=28 Identities=21% Similarity=0.612 Sum_probs=22.6
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|.. .|.
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2yrj_A 9 GEKPYRCGECGKAFAQKANLTQHQR--IHT 36 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHT--TTS
T ss_pred CCCCeECCCCCCccCCHHHHHHHHH--HcC
Confidence 3456899999999999999999964 464
No 234
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=51.24 E-value=5.3 Score=38.06 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=32.8
Q ss_pred eecccCCccccC-HHHHHHHHHHhccCCCCcchhhhhccccCCCCC
Q 022703 6 LKCGDCGALLRS-VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (293)
Q Consensus 6 LkC~~Cg~v~~~-~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~ 50 (293)
.-|..||.++-| +.-|..|+..|||..|-... .....|-.|+.
T Consensus 63 ~~cl~cg~~~c~~~~h~~~H~~~~~h~~~~~~~--~~~~~c~~~~~ 106 (476)
T 3mhs_A 63 FMCLQCGFCGCWNHSHFLSHSKQIGHIFGINSN--NGLLFCFKCED 106 (476)
T ss_dssp EEESSSSCEEETTTTHHHHHHHHHCCCEEEETT--TCCEEETTTTE
T ss_pred eEeCCCCCCccCCchHHHHHhcccCCcEEEECC--CCcEEeCCCCC
Confidence 468889988865 46799999999998876442 23468988986
No 235
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=51.19 E-value=10 Score=25.65 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=31.1
Q ss_pred cceeeccc--CCccccCHHHHHHHHHHhccCCCCcchhhhhccccC--CCCCCC
Q 022703 3 GVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKPC 52 (293)
Q Consensus 3 ~~~LkC~~--Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~--~Cg~~~ 52 (293)
.....|.. ||+.+.....-+.|... |.. . ..|.|+ .||+.+
T Consensus 15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~---~----~~~~C~~~~C~k~f 59 (72)
T 2epa_A 15 IRSHICSHPGCGKTYFKSSHLKAHTRT--HTG---E----KPFSCSWKGCERRF 59 (72)
T ss_dssp CCCEECSSTTTCCEESSHHHHHHHHHH--HSS---S----CSEECCCTTCCCEE
T ss_pred cCceeCCCCCCccccCCHHHHHHHHHh--cCC---C----CCccCCCCCCCccc
Confidence 34678988 99999999999999854 532 1 349996 599863
No 236
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.01 E-value=14 Score=22.72 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=22.9
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|... |.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 36 (46)
T 2yto_A 9 GEKPYKCSDCGKAFTRKSGLHIHQQS--HT 36 (46)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHHH--HT
T ss_pred CCCCEECcccCCccCCHhHHHHHHHH--cC
Confidence 34568999999999999999999754 64
No 237
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=50.87 E-value=9.5 Score=30.98 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=7.0
Q ss_pred ccCCccccCHHHHHHHH
Q 022703 9 GDCGALLRSVQEAQEHA 25 (293)
Q Consensus 9 ~~Cg~v~~~~~~aq~ha 25 (293)
..||..+.....-+.|.
T Consensus 48 ~~C~~~f~~~~~l~~H~ 64 (190)
T 1tf6_A 48 EGCEKGFTSLHHLTRHS 64 (190)
T ss_dssp TTCCCCCSSHHHHHHHH
T ss_pred CCCChhhCCHHHHHHHH
Confidence 33444444444444443
No 238
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.71 E-value=12 Score=22.27 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=19.6
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
....+|..||+.+.....-..|..
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~ 31 (41)
T 2ept_A 8 QRVYECQECGKSFRQKGSLTLHER 31 (41)
T ss_dssp CCCEECSSSCCEESSHHHHHHHGG
T ss_pred CCCeECCCCCCCcCCHHHHHHHHH
Confidence 456789999999998888888854
No 239
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=50.47 E-value=4.2 Score=31.79 Aligned_cols=50 Identities=18% Similarity=0.438 Sum_probs=33.4
Q ss_pred ceeecc--cCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCC--CCCCCCCcccccccc
Q 022703 4 VSLKCG--DCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCAT--CGKPCRSKTETDLHR 62 (293)
Q Consensus 4 ~~LkC~--~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~--Cg~~~~~~~e~~~a~ 62 (293)
..++|. .||+.+.....-+.|... |.+ ...|.|+. ||+.+.+......+.
T Consensus 66 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f~~~~~L~~H~ 119 (155)
T 2gli_A 66 KPHKCTFEGCRKSYSRLENLKTHLRS--HTG-------EKPYMCEHEGCSKAFSNASDRAKHQ 119 (155)
T ss_dssp CCCCCCSTTCCCCCSSHHHHHHHHHH--TTT-------CCCEECCSTTCCCEESSSSTTHHHH
T ss_pred CCccCCCCCCCCcccCHHHHHHHHHH--cCC-------CCCeeCCCCCCCCccCCHHHHHHHH
Confidence 356787 488888888888888764 432 13478887 887776655555554
No 240
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.32 E-value=35 Score=24.53 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=33.1
Q ss_pred CHHHHHHHHh-CC-CCHHHHHHHHHHhCCCCHHHHHHHHHHhcCC
Q 022703 114 DKELLKELEA-MG-FPVARATRALHYSGNANVEAAVNWVVEHEND 156 (293)
Q Consensus 114 ~~~~l~~L~~-MG-F~~~~a~kAL~~tgn~~~E~A~~WL~~h~dD 156 (293)
..+.|.+.+. .| -+...|...|..+++ +++.|++-.|++.++
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~W-nLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNW-NIEAAVQDRLNEQEG 61 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTS-CHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCCC
Confidence 3456666665 57 788899999999876 899999999987654
No 241
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.26 E-value=14 Score=22.54 Aligned_cols=28 Identities=14% Similarity=0.459 Sum_probs=22.8
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|.. .|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2ytf_A 9 GEKPFECSECQKAFNTKSNLIVHQR--THT 36 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHH--TSC
T ss_pred CCCCcCCCCCCcccCCHHHHHHHHH--HhC
Confidence 3456899999999999999999965 365
No 242
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.24 E-value=14 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.375 Sum_probs=22.9
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|... |.
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~--H~ 36 (46)
T 2em3_A 9 GEKPYECKVCSKAFTQKAHLAQHQKT--HT 36 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHH--HC
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHH--hC
Confidence 34568999999999999999999754 64
No 243
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.23 E-value=13 Score=22.65 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=21.1
Q ss_pred cceeecccCCccccCHHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
...++|..||+.+.....-+.|...
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2eor_A 10 EKPYNCEECGKAFIHDSQLQEHQRI 34 (46)
T ss_dssp CCSEECTTTCCEESSHHHHHHHHHH
T ss_pred CcCccCCCCCCCcCCHHHHHHHHHh
Confidence 4568999999999999999999654
No 244
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.96 E-value=12 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=21.6
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
....+|..||+.+.....-..|.. .|.
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~--~H~ 36 (46)
T 2enf_A 10 EKPYKCNECGKVFTQNSHLVRHRG--IHT 36 (46)
T ss_dssp CCSCBCSSSCCBCSSHHHHHHHHT--TTT
T ss_pred CcCeECCCCCcccCCHHHHHHHHH--hhC
Confidence 456789999999999999889964 364
No 245
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.86 E-value=11 Score=22.99 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=22.2
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
...++|..||+.+.....-..|.. .|.
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~--~H~ 36 (45)
T 2epu_A 10 QKPFECTHCGKSFRAKGNLVTHQR--IHT 36 (45)
T ss_dssp CCSEEETTTTEEESSHHHHHHHHT--TTS
T ss_pred CcCccCCCCCCccCChHHHHHHHH--HhC
Confidence 456899999999999999999964 465
No 246
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=49.85 E-value=8 Score=29.04 Aligned_cols=28 Identities=25% Similarity=0.702 Sum_probs=19.5
Q ss_pred eeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
.|.|++|+..+. ..|+ ++..+|+.||+-
T Consensus 37 ~I~CnDC~~~s~--------------v~~h-----~lg~kC~~C~Sy 64 (79)
T 2k2d_A 37 DILCNDCNGRST--------------VQFH-----ILGMKCKICESY 64 (79)
T ss_dssp EEEESSSCCEEE--------------EECC-----TTCCCCTTTSCC
T ss_pred EEECCCCCCCcc--------------CCce-----eecccCcCCCCc
Confidence 589999998753 2232 344599999985
No 247
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.70 E-value=11 Score=22.80 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.6
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
....+|..||+.+.....-..|..
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~ 33 (44)
T 2en7_A 10 MKPYVCNECGKAFRSKSYLIIHTR 33 (44)
T ss_dssp SSSSCCTTTCCCCSSHHHHHHHHT
T ss_pred CcCeECCCCCCccCCHHHHHHHhh
Confidence 445789999999998888888874
No 248
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.57 E-value=13 Score=22.27 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=19.6
Q ss_pred CcceeecccCCccccCHHHHHHHHH
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
+....+|..||+.+.....-..|..
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~~H~~ 32 (42)
T 2en2_A 8 GEKPYKCETCGARFVQVAHLRAHVL 32 (42)
T ss_dssp SSCSEECTTTCCEESSHHHHHHHTH
T ss_pred CCCCEeCCCcChhhCCHHHHHHHHH
Confidence 3456789999999988888888864
No 249
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=49.55 E-value=14 Score=23.80 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.1
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
.....|..||+.+.....-..|..
T Consensus 22 ~k~~~C~~C~k~f~~~~~L~~H~~ 45 (54)
T 1yui_A 22 EQPATCPICYAVIRQSRNLRRHLE 45 (54)
T ss_dssp SCCEECTTTCCEESSHHHHHHHHH
T ss_pred CCCccCCCCCcccCCHHHHHHHHH
Confidence 345789999999988888888864
No 250
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.50 E-value=13 Score=22.75 Aligned_cols=28 Identities=18% Similarity=0.437 Sum_probs=22.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|.. .|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2yts_A 9 GEKPYICNECGKSFIQKSHLNRHRR--IHT 36 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHGG--GTS
T ss_pred CCcCEECCCCChhhCChHHHHHHHH--hcC
Confidence 3456899999999999999888964 464
No 251
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.36 E-value=11 Score=23.03 Aligned_cols=28 Identities=25% Similarity=0.571 Sum_probs=22.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|.. .|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2eq1_A 9 GEKPYKCNECGKAFRAHSNLTTHQV--IHT 36 (46)
T ss_dssp CSCCCCCTTTTCCCSSHHHHHHHHT--TTC
T ss_pred CCCCeECCcCChhhCCHHHHHHHHH--HhC
Confidence 3456789999999999998888964 464
No 252
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.22 E-value=12 Score=22.90 Aligned_cols=27 Identities=19% Similarity=0.484 Sum_probs=21.8
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
....+|..||+.+.....-..|.. .|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2emg_A 10 ENPFICSECGKVFTHKTNLIIHQK--IHT 36 (46)
T ss_dssp CCSCBCTTTCCBCSSHHHHHHHHT--TTS
T ss_pred CCCEECCccCcccCCHHHHHHHHH--HhC
Confidence 445789999999999999999964 364
No 253
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.92 E-value=22 Score=24.45 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=30.7
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
..++|..|++.+.....-..|... |.. ...+.|+.||..
T Consensus 46 ~~~~C~~C~~~f~~~~~L~~H~~~--h~~-------~~~~~~~~~~~~ 84 (86)
T 1x6h_A 46 AAFVCSKCGKTFTRRNTMARHADN--CAG-------PDGVEGENSGPS 84 (86)
T ss_dssp CCEECSSSCCEESCHHHHHHHHHH--CCC-------CCSCCCCCCCCC
T ss_pred cceECCCCCChhCCHHHHHHHHHH--ccC-------CCCcccCCCCCC
Confidence 468999999999999999999876 432 134789999874
No 254
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.72 E-value=13 Score=22.35 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=17.4
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
....+|..||+.+.....-..|..
T Consensus 9 ~k~~~C~~C~k~f~~~~~L~~H~~ 32 (42)
T 2eos_A 9 EKPYPCEICGTRFRHLQTLKSHLR 32 (42)
T ss_dssp SCCBCCSSSCCCBSSHHHHHHHTT
T ss_pred CCCEECCCCCCccCCHHHHHHHHH
Confidence 345678888888887777777753
No 255
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.59 E-value=12 Score=22.94 Aligned_cols=28 Identities=21% Similarity=0.552 Sum_probs=22.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|... |.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 36 (46)
T 2ep1_A 9 GEKPYECSDCGKSFIKKSQLHVHQRI--HT 36 (46)
T ss_dssp SCCSSCCSSSCCCCSSHHHHHHHHGG--GS
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHH--hC
Confidence 34567899999999999999999753 65
No 256
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.43 E-value=15 Score=22.11 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=21.0
Q ss_pred cceeecccCCccccCHHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
....+|..||+.+.....-..|...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (44)
T 2eof_A 10 EKPYECNECQKAFNTKSNLMVHQRT 34 (44)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHH
T ss_pred CCCeECCCCCcccCCHhHHHHHHHH
Confidence 4568999999999999999999754
No 257
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.16 E-value=11 Score=23.01 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=22.4
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|.. .|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2eq3_A 9 GEKPYECNQCGKAFSVRSSLTTHQA--IHT 36 (46)
T ss_dssp CCCSSEETTTTEECSSHHHHHHHHT--TSC
T ss_pred CCCCeECCCCChhhCCHHHHHHHHH--HhC
Confidence 3456789999999999999999964 464
No 258
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.95 E-value=14 Score=22.62 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=22.0
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
...++|..||+.+.....-+.|... |.
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~--H~ 36 (46)
T 2en9_A 10 KKLFKCNECKKTFTQSSSLTVHQRI--HT 36 (46)
T ss_dssp SCCCBCTTTCCBCSSHHHHHHHHHH--HT
T ss_pred CCCEECCccCcccCCHHHHHHHHHH--cC
Confidence 4567899999999999999999654 64
No 259
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.85 E-value=13 Score=22.48 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=21.5
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
....+|..||+.+.....-..|.. .|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (44)
T 2emb_A 10 RKRYECSKCQATFNLRKHLIQHQK--THA 36 (44)
T ss_dssp CSSEECTTTCCEESCHHHHHHHGG--GGC
T ss_pred CCCeECCCCCCccCCHHHHHHHHH--HcC
Confidence 456789999999999888888864 364
No 260
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=47.84 E-value=9.5 Score=20.26 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=15.1
Q ss_pred eecccCCccccCHHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
.+|..||..+.....-..|..
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~ 23 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNLKAHLK 23 (29)
T ss_dssp CCCSSCCCCCCTTTHHHHHHH
T ss_pred CcCCCCCcccCCHHHHHHHHH
Confidence 468888888877766666653
No 261
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.43 E-value=12 Score=22.61 Aligned_cols=28 Identities=21% Similarity=0.566 Sum_probs=22.0
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|.. .|.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (44)
T 2eoj_A 9 GENPYECCECGKVFSRKDQLVSHQK--THS 36 (44)
T ss_dssp SCCSCEETTTTEECSSHHHHHHHHT--TSS
T ss_pred CCcCeeCCCCCCccCCHHHHHHHHH--HcC
Confidence 3456889999999999988888864 364
No 262
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.38 E-value=14 Score=22.67 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=21.5
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
....+|..||+.+.....-..|.. .|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2em6_A 10 EKCYKCDVCGKEFSQSSHLQTHQR--VHT 36 (46)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHHHT--TTS
T ss_pred CCCeECCCCCcccCCHHHHHHHHH--HcC
Confidence 456789999999999988888853 464
No 263
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.65 E-value=14 Score=22.32 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=20.7
Q ss_pred cceeecccCCccccCHHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
....+|..||+.+.....-..|...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (44)
T 2yu5_A 10 ENPFKCSKCDRVFTQRNYLVQHERT 34 (44)
T ss_dssp CCSEECSSSSCEESSSHHHHHHHHH
T ss_pred CCCeECCCCCchhCCHHHHHHHhHh
Confidence 4567899999999998888888754
No 264
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.60 E-value=14 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=22.8
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
+....+|..||+.+.....-..|... |.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 36 (46)
T 2eoz_A 9 GEKPYSCNVCGKAFVLSAHLNQHLRV--HT 36 (46)
T ss_dssp SCCSEEETTTTEEESSHHHHHHHHHH--HS
T ss_pred CCCCeECcccChhhCCHHHHHHHHHH--hC
Confidence 34568999999999999999999654 64
No 265
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=46.40 E-value=13 Score=30.11 Aligned_cols=21 Identities=14% Similarity=0.491 Sum_probs=10.1
Q ss_pred eecc--cCCccccCHHHHHHHHH
Q 022703 6 LKCG--DCGALLRSVQEAQEHAE 26 (293)
Q Consensus 6 LkC~--~Cg~v~~~~~~aq~ha~ 26 (293)
+.|. .||..+.....-..|..
T Consensus 73 ~~C~~~~C~~~f~~~~~l~~H~~ 95 (190)
T 1tf6_A 73 FTCDSDGCDLRFTTKANMKKHFN 95 (190)
T ss_dssp EECCSSSCCCEESCHHHHHHHHH
T ss_pred eeCCCCCCCCccCCHHHHHHHHH
Confidence 4444 45555544444444443
No 266
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=52.05 E-value=4.2 Score=21.74 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=13.2
Q ss_pred eecccCCccccCHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHA 25 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha 25 (293)
.+|..||+.+.....-..|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~ 22 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLANHI 22 (26)
Confidence 46777777776666555554
No 267
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=46.04 E-value=16 Score=26.97 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.2
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~ 32 (293)
+....+|..||+.|.....-..|... .|.+
T Consensus 53 ~~k~~~C~~C~k~F~~~~~L~~H~~~-~H~~ 82 (85)
T 2lv2_A 53 AAQVFPCKYCPATFYSSPGLTRHINK-CHPS 82 (85)
T ss_dssp CSSSEECTTSSCEESSHHHHHHHHHT-TCTT
T ss_pred CCCccCCCCCCCEeCCHHHHHHhCcc-cCcC
Confidence 34568999999999999999999877 6753
No 268
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=45.85 E-value=6.7 Score=27.68 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCC---HHHHHHHHHHhCCCCHHHHHHHHHH
Q 022703 115 KELLKELEAMGFP---VARATRALHYSGNANVEAAVNWVVE 152 (293)
Q Consensus 115 ~~~l~~L~~MGF~---~~~a~kAL~~tgn~~~E~A~~WL~~ 152 (293)
.+.+.+|.+| || .+...-.|...++ +++.|+|-|++
T Consensus 13 ~~~~~~L~~M-FP~lD~evI~~Vl~a~~G-~~~~~IdaLLq 51 (54)
T 1p3q_Q 13 KDTLNTLQNM-FPDMDPSLIEDVCIAAAS-RIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHH-STTSCHHHHHHHHHHSCC---CGGGC----
T ss_pred HHHHHHHHHH-cccCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence 4678999999 55 5667777777665 78888888765
No 269
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.84 E-value=15 Score=22.28 Aligned_cols=25 Identities=28% Similarity=0.619 Sum_probs=20.1
Q ss_pred cceeecccCCccccCHHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
...+.|..||+.+.....-+.|...
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~ 34 (44)
T 2eou_A 10 KTTSECQECGKIFRHSSLLIEHQAL 34 (44)
T ss_dssp SCCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred CcCeECCCCCcccCCHHHHHHHHHH
Confidence 3457899999999988888888654
No 270
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.77 E-value=17 Score=22.03 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=20.6
Q ss_pred cceeecccCCccccCHHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
....+|..||+.+.....-..|...
T Consensus 8 ~k~~~C~~C~k~f~~~~~L~~H~~~ 32 (43)
T 2yrm_A 8 NGAFFCNECDCRFSEEASLKRHTLQ 32 (43)
T ss_dssp SCCBCCSSSCCCBSSHHHHHHHHHH
T ss_pred CCCEECCCCCCeeCChHHHHHHHHh
Confidence 4567899999999998888888654
No 271
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.67 E-value=14 Score=22.78 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=21.5
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
...++|..||+.+.....-+.|.. .|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2eon_A 10 EKPYKCQVCGKAFRVSSHLVQHHS--VHS 36 (46)
T ss_dssp CCSCBCSSSCCBCSSHHHHHHHTT--TTT
T ss_pred CcccCCCCCCcccCcHHHHHHHHH--hcC
Confidence 456789999999999988888864 365
No 272
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=45.51 E-value=6.9 Score=32.01 Aligned_cols=45 Identities=16% Similarity=-0.011 Sum_probs=29.7
Q ss_pred eecccCCccc--c-------CHHHHHHHHHHhccCCCCcch---hhhhccccCCCCC
Q 022703 6 LKCGDCGALL--R-------SVQEAQEHAELTSHSNFSEST---EAVLNLVCATCGK 50 (293)
Q Consensus 6 LkC~~Cg~v~--~-------~~~~aq~ha~~TgH~~F~e~~---d~i~~~~C~~Cg~ 50 (293)
--|..||.|+ + ++.-|..|...|||..+-... -..-...|=.|+.
T Consensus 47 wlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t~H~l~v~l~t~~~~~~~vwcY~cd~ 103 (129)
T 2g45_A 47 WLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDD 103 (129)
T ss_dssp EEETTTCCEEECCBCTTSCBCCSHHHHHHHHHCCCEEEETTCCBTTBCCEEETTTTE
T ss_pred EEeccCCccccCccccCCCCcCcHHHHHhhhcCCCEEEECCCCCCCCCeEEECCCCC
Confidence 3577788874 1 367799999999998765321 0013457777765
No 273
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=45.49 E-value=7.6 Score=30.01 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=31.3
Q ss_pred eeccc--CCccccC---HHHHHHHHHHhccCCCCcchhhhhccccCCCCC
Q 022703 6 LKCGD--CGALLRS---VQEAQEHAELTSHSNFSESTEAVLNLVCATCGK 50 (293)
Q Consensus 6 LkC~~--Cg~v~~~---~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~ 50 (293)
.-|.. ||.|+=| ..-|..|.+.|||..|-... .....|=.|+.
T Consensus 39 w~CL~~~Cg~vgCgr~~~~Ha~~H~~~t~H~~~~~l~--~~~vwCy~cdd 86 (97)
T 2uzg_A 39 WACLENRCSYVGCGESQVDHSTIHSQETKHYLTVNLT--TLRVWCYACSK 86 (97)
T ss_dssp EEECCTTCCCEECCTTTTCHHHHHHHHTTCCEEEETT--TTEEEETTTTE
T ss_pred eeeecccCCCcccCCCcChHHHHHhhhcCCcEEEECC--CCCEEECCCCc
Confidence 46888 9988743 46699999999999886542 23467777765
No 274
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.46 E-value=15 Score=22.58 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=21.5
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
....+|..||+.+.....-..|.. .|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2eoy_A 10 EKCFKCNKCEKTFSCSKYLTQHER--IHT 36 (46)
T ss_dssp SCCEECSSSCCEESSSHHHHHHHT--TCC
T ss_pred CCCEECcCCCCcCCCHHHHHHHHH--HcC
Confidence 456789999999999888888864 464
No 275
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.45 E-value=16 Score=22.44 Aligned_cols=27 Identities=15% Similarity=0.489 Sum_probs=21.8
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
...++|..||+.+.....-..|... |.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~ 36 (46)
T 2eoh_A 10 KKPYECKECRKTFIQIGHLNQHKRV--HT 36 (46)
T ss_dssp SCSCCCSSSCCCCSSHHHHHHHHHH--CS
T ss_pred CCCcCCCCcCchhCCHHHHHHHHHH--hC
Confidence 4567899999999999998999753 64
No 276
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.26 E-value=12 Score=22.91 Aligned_cols=27 Identities=22% Similarity=0.655 Sum_probs=21.1
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
...++|..||+.+.....-+.|.. .|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2eq2_A 10 GKPYQCNECGKAFSQTSKLARHQR--VHT 36 (46)
T ss_dssp SCSSSCCSSCCCCSSHHHHHHHGG--GGC
T ss_pred CCCeECCCCCcccCCHHHHHHHHH--HcC
Confidence 456789999999999888888864 364
No 277
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=44.91 E-value=20 Score=26.66 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=11.5
Q ss_pred eecccCCccccCHHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
+.|..||..+.....-..|..
T Consensus 35 ~~C~~C~~~f~~~~~l~~H~~ 55 (124)
T 1ubd_C 35 HVCAECGKAFVESSKLKRHQL 55 (124)
T ss_dssp EECTTTCCEESSHHHHHHHGG
T ss_pred eECCCCCchhCCHHHHHHHHH
Confidence 455555555555555555543
No 278
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.88 E-value=12 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=21.0
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
...++|..||+.+.....-..|.. .|.
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~--~H~ 36 (46)
T 2enh_A 10 EKPYECDVCRKAFSHHASLTQHQR--VHS 36 (46)
T ss_dssp SSSCBCTTTCCBCSSSHHHHHHGG--GSC
T ss_pred CCCcCCCCcCchhCCHHHHHHHHH--HhC
Confidence 456789999999988888888854 364
No 279
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.60 E-value=15 Score=22.49 Aligned_cols=27 Identities=19% Similarity=0.539 Sum_probs=21.0
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
...++|..||+.+.....-..|.. .|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~ 36 (46)
T 2yth_A 10 EKPFQCEECGKRFTQNSHLHSHQR--VHT 36 (46)
T ss_dssp SSSBCCSSSCCCBSSHHHHHHHGG--GGT
T ss_pred CcCCCCCCCCcccCCHHHHHHHHH--hcC
Confidence 456789999999998888888854 364
No 280
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.48 E-value=16 Score=22.42 Aligned_cols=27 Identities=22% Similarity=0.612 Sum_probs=21.6
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
....+|..||+.+.....-..|... |.
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~--H~ 36 (46)
T 2eom_A 10 ERGHRCSDCGKFFLQASNFIQHRRI--HT 36 (46)
T ss_dssp CSSCCCSSSCCCCSSHHHHHHHHHH--HS
T ss_pred CCCcCCCCCCCeeCChHHHHHHHHH--hC
Confidence 4467899999999999888888653 64
No 281
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=50.27 E-value=4.7 Score=21.97 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=15.3
Q ss_pred eeecccCCccccCHHHHHHHHH
Q 022703 5 SLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
.++|..||..+.....-+.|..
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~ 24 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGALQRHVR 24 (30)
Confidence 3578888888877666666643
No 282
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.06 E-value=13 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=21.1
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
....+|..||+.+.....-..|.. .|.
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~--~H~ 36 (46)
T 2yti_A 10 EKPYKCNECGKVFTQNSHLARHRG--IHT 36 (46)
T ss_dssp CCTTCCSSSCCCCSSHHHHHHHHT--TTS
T ss_pred CcCeECCCCCcccCChhHHHHHhH--hcC
Confidence 445789999999999888888863 464
No 283
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=43.52 E-value=6.3 Score=26.43 Aligned_cols=13 Identities=23% Similarity=0.537 Sum_probs=9.7
Q ss_pred CCcceeecccCCc
Q 022703 1 MAGVSLKCGDCGA 13 (293)
Q Consensus 1 ~~~~~LkC~~Cg~ 13 (293)
|....|.|..||.
T Consensus 1 m~~~~~~CP~C~~ 13 (50)
T 1pft_A 1 MVNKQKVCPACES 13 (50)
T ss_dssp CCSSCCSCTTTSC
T ss_pred CCCccEeCcCCCC
Confidence 4556788999976
No 284
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.42 E-value=17 Score=22.15 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=20.9
Q ss_pred CcceeecccCCccccCHHHHHHHHHH
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
+....+|..||+.+.....-..|...
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~ 34 (46)
T 2en3_A 9 GEKPFQCKECGMNFSWSCSLFKHLRS 34 (46)
T ss_dssp CCCSEECSSSCCEESSSHHHHHHHHH
T ss_pred CCCCeeCcccChhhCCHHHHHHHHHH
Confidence 34568899999999988888888743
No 285
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=43.30 E-value=12 Score=27.47 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=31.7
Q ss_pred Ccceeeccc--CCccccCHHHHHHHHHHhccCCCCcchhhhhccccC--CCCCCC
Q 022703 2 AGVSLKCGD--CGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCA--TCGKPC 52 (293)
Q Consensus 2 ~~~~LkC~~--Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~--~Cg~~~ 52 (293)
+...+.|.. ||..+.....-+.|... |.+ ...|.|+ .||+.+
T Consensus 3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~-------~~~~~C~~~~C~~~f 48 (119)
T 2jp9_A 3 EKRPFMCAYPGCNKRYFKLSHLQMHSRK--HTG-------EKPYQCDFKDCERRF 48 (119)
T ss_dssp SSCCBCCCSTTSCCCBSCHHHHHHHHHH--HHT-------TCCEECCSTTCCCEE
T ss_pred CCeeeeCCCCCCcchhCCHHHHHHHHHh--hCC-------CCCccCCCCCCcCcc
Confidence 345688996 99999999999999874 432 1347888 788864
No 286
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=49.24 E-value=5 Score=21.90 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=14.0
Q ss_pred eecccCCccccCHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHA 25 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha 25 (293)
++|..||+.+.....-..|.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~ 22 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLIAHV 22 (29)
Confidence 56888888877666666664
No 287
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.10 E-value=11 Score=22.52 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=14.6
Q ss_pred ceeecccCCccccCHHHHHHHH
Q 022703 4 VSLKCGDCGALLRSVQEAQEHA 25 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha 25 (293)
...+|..||+.+.....-..|.
T Consensus 10 k~~~C~~C~k~f~~~~~L~~H~ 31 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGSLIVHI 31 (42)
T ss_dssp CSBCCTTTTCCBSSHHHHHTTG
T ss_pred CCeeCCCccchhCCHHHHHHHH
Confidence 4466777777777666666664
No 288
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=41.23 E-value=15 Score=29.90 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHhCC--CCHHHHHHHHHHhcCCC
Q 022703 124 MGFPVARATRALHYSGN--ANVEAAVNWVVEHENDP 157 (293)
Q Consensus 124 MGF~~~~a~kAL~~tgn--~~~E~A~~WL~~h~dD~ 157 (293)
|+||++.-..-|..-.+ .+++.++.|++.|....
T Consensus 1 m~fs~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a 36 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDA 36 (142)
T ss_dssp -CCCHHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGH
T ss_pred CCCCHHHHHHHHHhccccHHHHHHHHHHHHHhhhhH
Confidence 89999999888865443 47999999999987653
No 289
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=40.19 E-value=15 Score=25.29 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=23.6
Q ss_pred CcceeecccCCccccCHHHHHHHHHHhccCC
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~ 32 (293)
+....+|..||+.+.....-..|.. .|++
T Consensus 29 ~ekp~~C~~C~k~F~~~~~L~~H~~--~Htg 57 (60)
T 4gzn_C 29 GYRPRSCPECGKCFRDQSEVNRHLK--VHQN 57 (60)
T ss_dssp TCCCEECTTTCCEESSHHHHHHHGG--GGSC
T ss_pred CCcCeECCCCCCCcCCHHHHHHHhC--ccCC
Confidence 3456899999999999999999963 4764
No 290
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.13 E-value=21 Score=21.85 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=20.3
Q ss_pred cceeecccCCccccCHHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
....+|..||+.+.....-+.|...
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~ 34 (46)
T 2emz_A 10 ERPFKCNECGKGFGRRSHLAGHLRL 34 (46)
T ss_dssp CCSCCCSSSCCCCSSHHHHHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHHHHHH
Confidence 3457899999999998888888654
No 291
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=38.74 E-value=40 Score=24.69 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=30.6
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
...++|..||+.+.....-..|... |.. ...|.|..|...
T Consensus 23 ~kpy~C~~C~k~F~~~~~L~~H~~~--Ht~-------ekp~~C~~~~~~ 62 (88)
T 1x6f_A 23 NSTYQCKHCDSKLQSTAELTSHLNI--HNE-------EFQKRAKRQERR 62 (88)
T ss_dssp CSCEECSSSCCEESSHHHHHHHHHH--HHH-------HHHHHCCCCSCC
T ss_pred CCCCcCCCCCCEeCCHHHHHHHHHH--hCC-------CCCcccchhhhH
Confidence 4568999999999999998999753 542 234899888754
No 292
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=38.59 E-value=82 Score=23.21 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=28.5
Q ss_pred HHHHHHHhC--CCCHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 116 ELLKELEAM--GFPVARATRALHYSGNANVEAAVNWVVEH 153 (293)
Q Consensus 116 ~~l~~L~~M--GF~~~~a~kAL~~tgn~~~E~A~~WL~~h 153 (293)
..++++.++ -+..-.+.+.|.+.++ |+|.+++.||+.
T Consensus 15 s~I~qV~DLfPdLG~gfi~~~L~~y~~-nvE~vin~LLE~ 53 (71)
T 2di0_A 15 SLISQVKDLLPDLGEGFILACLEYYHY-DPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHTTT-CHHHHHHHHHTT
T ss_pred HHHHHHHHHcccCCHHHHHHHHHHhCC-CHHHHHHHHHcc
Confidence 446666665 2556788888988876 899999999985
No 293
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=37.52 E-value=13 Score=30.15 Aligned_cols=46 Identities=13% Similarity=0.293 Sum_probs=30.5
Q ss_pred ceeecccCCccc--------------cCHHHHHHHHHHhccC--CCCcchhhhhccccCCCC
Q 022703 4 VSLKCGDCGALL--------------RSVQEAQEHAELTSHS--NFSESTEAVLNLVCATCG 49 (293)
Q Consensus 4 ~~LkC~~Cg~v~--------------~~~~~aq~ha~~TgH~--~F~e~~d~i~~~~C~~Cg 49 (293)
..++|+.||+.. .+...+.+..+.+.+. .|.=-.=-+.-++|.+|-
T Consensus 19 ~~V~C~nCgr~vPKDKAIKrf~irniVeaaavrDi~ea~v~~~~~y~lPKlyvK~~YCVSCA 80 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKRYTVRDMVDPSSKRDIQQKLAFENEKQGIPKLYVKLQYCISCA 80 (119)
T ss_dssp CEEECTTTCCEEETTTSEECCEEECSSCHHHHHHHHHSBCSCCCSCCSCCEEECCEECHHHH
T ss_pred ccEeeCCccccCcccceeEEEEeccCccHHHHHHHHhccccccccccccceeeeEEEeeeee
Confidence 468999999876 5778888888885443 333000014458999993
No 294
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=37.52 E-value=5.2 Score=22.92 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=7.7
Q ss_pred cccCCCCCC
Q 022703 43 LVCATCGKP 51 (293)
Q Consensus 43 ~~C~~Cg~~ 51 (293)
|.|+.||+.
T Consensus 3 ~~C~~C~k~ 11 (32)
T 2kfq_A 3 FACPACPKR 11 (32)
T ss_dssp SSSSSSCTT
T ss_pred CCCCCCCcc
Confidence 789999986
No 295
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.48 E-value=31 Score=23.51 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=25.0
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNF 33 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F 33 (293)
...++|..||+.+.....-..|... -|..-
T Consensus 36 ~~~~~C~~C~k~f~~~~~L~~H~~~-~H~~~ 65 (78)
T 2d9h_A 36 ALRFPCEFCGKRFEKPDSVAAHRSK-SHPAL 65 (78)
T ss_dssp TCCEECTTTCCEESSHHHHHHHHHH-TSTTT
T ss_pred CcccCCCCCCchhCCHHHHHHHHHH-hCCCC
Confidence 4568999999999999999999876 66653
No 296
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.48 E-value=13 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.591 Sum_probs=19.6
Q ss_pred cceeecccCCccccCHHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
....+|..||+.+.....-..|...
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~H~~~ 34 (44)
T 2eox_A 10 SKSYNCNECGKAFTRIFHLTRHQKI 34 (44)
T ss_dssp CCCEEETTTTEEESSSHHHHTTHHH
T ss_pred CCCeECcccCcccCCHHHHHHHHHH
Confidence 4567899999999888888888653
No 297
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=36.89 E-value=27 Score=22.93 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=21.9
Q ss_pred CcceeecccCCccccCHHHHHHHHHH
Q 022703 2 AGVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 2 ~~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
+...++|..||..+.....-+.|...
T Consensus 37 ~~~~~~C~~C~k~f~~~~~L~~H~~~ 62 (66)
T 2drp_A 37 NVKVYPCPFCFKEFTRKDNMTAHVKI 62 (66)
T ss_dssp SCCCEECTTTCCEESCHHHHHHHHHH
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHH
Confidence 34568999999999999998888765
No 298
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=36.55 E-value=35 Score=29.62 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=25.3
Q ss_pred CHHHHHHHHhCCCCHHHHHHHHHHh-C-CCCHHH
Q 022703 114 DKELLKELEAMGFPVARATRALHYS-G-NANVEA 145 (293)
Q Consensus 114 ~~~~l~~L~~MGF~~~~a~kAL~~t-g-n~~~E~ 145 (293)
..++++.|+.+||++..|.+|+... . +.+++.
T Consensus 160 ~~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~ 193 (203)
T 1cuk_A 160 EQEAVARLVALGYKPQEASRMVSKIARPDASSET 193 (203)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHH
Confidence 3689999999999999999999875 2 335553
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.83 E-value=17 Score=30.16 Aligned_cols=45 Identities=20% Similarity=0.455 Sum_probs=23.7
Q ss_pred eeecccCCccccCH----HHHHHHHHHhccCCCCcc-hhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRSV----QEAQEHAELTSHSNFSES-TEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~----~~aq~ha~~TgH~~F~e~-~d~i~~~~C~~Cg~~ 51 (293)
-|.|..||.|..=. ...+.+.. ...+|.=. ..-.+--.|+.|.++
T Consensus 107 HliC~~CG~v~e~~~~~~~~~~~~~~--~~~Gf~i~~~~l~~~GiC~~C~~~ 156 (162)
T 4ets_A 107 HMICKNCGKIIEFENPIIERQQALIA--KEHGFKLTGHLMQLYGVCGDCNNQ 156 (162)
T ss_dssp EEEETTTCCEEEECCHHHHHHHHHHH--HHTTCEEEEEEEEEEEECSTTC--
T ss_pred EEEECCCCCEEEecccchhHHHHHHH--HhCCCEEEEEEEEEEEEChHHcCc
Confidence 47899999998321 12222222 23456421 122344689999764
No 300
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.42 E-value=28 Score=23.54 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=21.3
Q ss_pred cceeecccCCccccCHHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAEL 27 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~ 27 (293)
....+|..||+.+.....-+.|...
T Consensus 43 ~~~~~C~~C~k~f~~~~~L~~H~~~ 67 (74)
T 2lce_A 43 EKPYRCNICGAQFNRPANLKTHTRI 67 (74)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHH
T ss_pred CCCEECCCCCchhCCHHHHHHHHHh
Confidence 3468999999999999999999753
No 301
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=35.33 E-value=51 Score=28.92 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHh
Q 022703 115 KELLKELEAMGFPVARATRALHYS 138 (293)
Q Consensus 115 ~~~l~~L~~MGF~~~~a~kAL~~t 138 (293)
.++++.|+.+||++..|.+|+...
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 689999999999999999998653
No 302
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.65 E-value=26 Score=26.68 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=31.1
Q ss_pred cceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
....+|..||+.+.....-..|... .|.. . ..|.|+.|+.-
T Consensus 48 ekpf~C~~Cgk~F~~~~~L~~H~~r-~Htg---e----kpy~C~~~~~~ 88 (102)
T 2ghf_A 48 NSSYVCVECNFLTKRYDALSEHNLK-YHPG---E----ENFKLTMVKRN 88 (102)
T ss_dssp SCCEEETTTTEEESSTHHHHTHHHH-TSTT---C----CCEEEEECCCS
T ss_pred CCCcCCCCCCcccCCHHHHHHHHHH-hcCC---C----CCeeCCcccCC
Confidence 3468999999999999998999544 5653 2 34899987764
No 303
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=33.98 E-value=24 Score=27.33 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=12.8
Q ss_pred eecccCCccccCHHHHHHHHH
Q 022703 6 LKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
..|..||..+.....-..|..
T Consensus 63 ~~C~~C~~~f~~~~~l~~H~~ 83 (155)
T 2rpc_A 63 EECPREGKSFKAKYKLVNHIR 83 (155)
T ss_dssp TTCTTSSCCCSSHHHHHHHTH
T ss_pred cCCCCcccccCCHHHHHHHHH
Confidence 456666666666666666654
No 304
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.18 E-value=35 Score=23.21 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=23.0
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
..++|..||+.+.....-..|... -|.
T Consensus 44 ~~~~C~~C~~~f~~~~~L~~H~~~-~H~ 70 (77)
T 2ct1_A 44 AKFHCPHCDTVIARKSDLGVHLRK-QHS 70 (77)
T ss_dssp SSEECSSSSCEESSHHHHHHHHHH-TSC
T ss_pred CccCCCCCCCccCCHHHHHHHHHH-hCC
Confidence 568999999999999999999876 443
No 305
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=32.85 E-value=14 Score=35.40 Aligned_cols=38 Identities=0% Similarity=-0.215 Sum_probs=28.3
Q ss_pred ccccccccccccchhhcccccccccCccc---cCCccccccCC
Q 022703 61 HRKRTGHTDFVDKTSEAAKPISLEVPKAT---ADSEEAIDVDM 100 (293)
Q Consensus 61 a~K~t~f~tFP~~Lvv~~~Rf~l~~p~K~---~~~~~~lDl~~ 100 (293)
..-...|+..|.||+||.-|| ..--|+ |.+|-.||+..
T Consensus 157 l~~gikisrLP~yLtVq~vRF--gKkaKIlrkV~fp~eLDvtd 197 (374)
T 2vhf_A 157 INSNLKFAEAPSCLIIQMPRF--GKDFKLFKKIFPSLELNITD 197 (374)
T ss_dssp HHHTEEESSCCSEEEEECCCC--SSSSSCCCCCBCCSEECCGG
T ss_pred HHcCCeeecCCcceEEeeecc--CccccccCCCCCcchhccHh
Confidence 333444899999999999999 334455 66788888865
No 306
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.62 E-value=16 Score=29.58 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=22.1
Q ss_pred eeecccCCccccC----HHHHHHHHHHhccCCCCc-chhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRS----VQEAQEHAELTSHSNFSE-STEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~----~~~aq~ha~~TgH~~F~e-~~d~i~~~~C~~Cg~~ 51 (293)
-|.|..||.|..= ....+.+... ..+|.- ...-++.-.|+.|.++
T Consensus 90 HliC~~Cg~v~~~~~~~~~~~~~~~~~--~~gf~i~~~~l~~~GiC~~C~~~ 139 (145)
T 3eyy_A 90 HLVCRDCTNVIEADLSVAADFTAKLRE--QFGFDTDMKHFAIFGRCESCSLK 139 (145)
T ss_dssp EEEESSSSCEEEECGGGGHHHHHHHHH--HTCEEECSCSSCEEEEECC----
T ss_pred EEEECCCCCEEEecCccHHHHHHHHHH--hCCCEEEeEEEEEEEECHHHhCc
Confidence 4789999999822 2223333322 234531 1122455689999764
No 307
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=31.66 E-value=28 Score=18.32 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=18.3
Q ss_pred eeecc--cCCccccCHHHHHHHHH
Q 022703 5 SLKCG--DCGALLRSVQEAQEHAE 26 (293)
Q Consensus 5 ~LkC~--~Cg~v~~~~~~aq~ha~ 26 (293)
...|. .||+.+.....-..|..
T Consensus 2 ~~~C~~~~C~k~f~~~~~l~~H~~ 25 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKLNRHKK 25 (29)
T ss_dssp CEEECSTTTCEEESSHHHHHHHHG
T ss_pred CCCCcCCcCcCccCCHHHHHHHHH
Confidence 36899 99999998888888864
No 308
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=31.21 E-value=18 Score=25.28 Aligned_cols=9 Identities=33% Similarity=1.003 Sum_probs=7.2
Q ss_pred ccccCCCCC
Q 022703 42 NLVCATCGK 50 (293)
Q Consensus 42 ~~~C~~Cg~ 50 (293)
.|+|..||-
T Consensus 36 r~~C~kCgy 44 (55)
T 2k4x_A 36 RYSCGRCGY 44 (55)
T ss_dssp EEECTTTCC
T ss_pred EEECCCCCC
Confidence 588888876
No 309
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=30.76 E-value=27 Score=22.83 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=16.5
Q ss_pred cceeecccCCccccCHHHHHHHHH
Q 022703 3 GVSLKCGDCGALLRSVQEAQEHAE 26 (293)
Q Consensus 3 ~~~LkC~~Cg~v~~~~~~aq~ha~ 26 (293)
...+.|..||..+.. .+.+.|..
T Consensus 7 ~~~~~C~~C~~~i~~-~~~~EH~D 29 (39)
T 2i5o_A 7 EDQVPCEKCGSLVPV-WDMPEHMD 29 (39)
T ss_dssp CCEEECTTTCCEEEG-GGHHHHHH
T ss_pred CCCcccccccCcCCc-ccccchhh
Confidence 456789999998865 45577654
No 310
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.60 E-value=62 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=30.8
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCCHHHHHHHHHHhcC
Q 022703 116 ELLKELEA-MGFPVARATRALHYSGNANVEAAVNWVVEHEN 155 (293)
Q Consensus 116 ~~l~~L~~-MGF~~~~a~kAL~~tgn~~~E~A~~WL~~h~d 155 (293)
+++.+.+. .|-+...|...|..+++ +++.|++=.|++.+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~W-dLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHW-QFETALSTFFQETN 58 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTT-CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHcCCC
Confidence 55666553 58899999999988876 89999998887543
No 311
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.50 E-value=33 Score=26.96 Aligned_cols=44 Identities=20% Similarity=0.446 Sum_probs=23.6
Q ss_pred ceeecccCCccccC----HHHHHHHHHHhccCCCCcc-hhhhhccccCCCC
Q 022703 4 VSLKCGDCGALLRS----VQEAQEHAELTSHSNFSES-TEAVLNLVCATCG 49 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~----~~~aq~ha~~TgH~~F~e~-~d~i~~~~C~~Cg 49 (293)
.-|.|..||.+..= .......... ..+|.=. ..-.+.-.|+.|.
T Consensus 82 ~HliC~~Cg~v~~~~~~~~~~~~~~~~~--~~gf~i~~~~l~~~G~C~~C~ 130 (131)
T 2o03_A 82 HHLVCRSCGSTIEVGDHEVEAWAAEVAT--KHGFSDVSHTIEIFGTCSDCR 130 (131)
T ss_dssp EEEEETTTCCEEEECCHHHHHHHHHHHH--HTTCSSCCCCCEEEECCTTTC
T ss_pred CEEEeCCCCCEEEECCcCHHHHHHHHHH--hcCCEEeccEEEEEEEChhhc
Confidence 35789999999832 1222222221 3456422 1224445799995
No 312
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=29.43 E-value=19 Score=29.43 Aligned_cols=13 Identities=15% Similarity=0.542 Sum_probs=10.7
Q ss_pred cceeecccCCccc
Q 022703 3 GVSLKCGDCGALL 15 (293)
Q Consensus 3 ~~~LkC~~Cg~v~ 15 (293)
...+.|..||...
T Consensus 44 ~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 44 RLLFECRTCSYVE 56 (133)
T ss_dssp CBCCBCSSSCCBC
T ss_pred eeEEECCCCCCcE
Confidence 4578999999876
No 313
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.40 E-value=19 Score=28.89 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=24.6
Q ss_pred eeecccCCccccCHH----HHHHHHHHhccCCCCcc-hhhhhccccCCCCCC
Q 022703 5 SLKCGDCGALLRSVQ----EAQEHAELTSHSNFSES-TEAVLNLVCATCGKP 51 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~----~aq~ha~~TgH~~F~e~-~d~i~~~~C~~Cg~~ 51 (293)
-|.|..||.|..=.. ....+... ..+|.=. ..-.+--.|+.|.++
T Consensus 87 HliC~~Cg~v~~~~~~~~~~~~~~~~~--~~gf~i~~~~l~~~GiC~~C~~~ 136 (139)
T 3mwm_A 87 HLVCRACGKAVEVEGPAVEKWAEAIAA--EHGYVNVAHTVEIFGTCADCAGA 136 (139)
T ss_dssp EEEETTTCCEEEECCHHHHHHHHHHHH--HTTCCSCCCCCEEEECCHHHHCC
T ss_pred EEEECCCCCEeecccccHHHHHHHHHH--hCCCEEEeeEEEEEEEChHHhCc
Confidence 488999999983221 22222221 2455421 122445689999664
No 314
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=28.31 E-value=2.8e+02 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 022703 176 SSLTPEEIKLKAQELRERAR 195 (293)
Q Consensus 176 k~lT~EEk~~k~~el~~k~r 195 (293)
..||++|-..+++.|.+.+.
T Consensus 6 ~al~~~~v~~~i~~m~~fI~ 25 (233)
T 4efa_E 6 TALTPNQVNDELNKMQAFIR 25 (233)
T ss_dssp CSSCHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHH
Confidence 47999999999998887764
No 315
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=27.71 E-value=19 Score=29.12 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=30.2
Q ss_pred eecccCCccc--c--CHHHHHHHHHH---hccCCCCcchhhhhccccCCCCC
Q 022703 6 LKCGDCGALL--R--SVQEAQEHAEL---TSHSNFSESTEAVLNLVCATCGK 50 (293)
Q Consensus 6 LkC~~Cg~v~--~--~~~~aq~ha~~---TgH~~F~e~~d~i~~~~C~~Cg~ 50 (293)
.-|..||.|+ + ++.-|..|.+. |||...-... .....|=.|+.
T Consensus 55 w~CL~CG~vgCgr~~~~~Ha~~H~~~~~~t~H~l~~~l~--t~~vwCY~cd~ 104 (126)
T 2i50_A 55 WLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLD--NWSVWCYVCDN 104 (126)
T ss_dssp EEETTTCCEEECTTSSSCHHHHHHHSCCSSCCCEEEETT--TCCEEETTTTE
T ss_pred eeeeeCCccccCCCCcchHHHHHHhCcCCCCCcEEEECC--CCeEEeCCCCc
Confidence 4688899997 2 45779999999 8898754332 13357777765
No 316
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.56 E-value=19 Score=26.10 Aligned_cols=28 Identities=29% Similarity=0.581 Sum_probs=8.2
Q ss_pred HHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 24 HAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 24 ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
|-..||-++++...-..+.|.|..||..
T Consensus 3 ~~~~~~g~~~~~~~~~~v~Y~C~~Cg~~ 30 (63)
T 3h0g_L 3 HPTSTGGTAFNPPRPATMIYLCADCGAR 30 (63)
T ss_dssp ----------------CCCCBCSSSCCB
T ss_pred ccccCCccccCCCCCCCeEEECCCCCCe
Confidence 3345566666655444556777777764
No 317
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=26.77 E-value=14 Score=35.82 Aligned_cols=40 Identities=23% Similarity=0.610 Sum_probs=23.9
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKP 51 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~ 51 (293)
|.-.|..||+-+.- +...|-==+|.++. +..|.|++||-+
T Consensus 219 ~~s~Cp~C~~~~~t------~~~~~~IP~F~eVi--ims~~C~~CGyr 258 (404)
T 2qkd_A 219 FNTNCPECNAPAQT------NMKLVQIPHFKEVI--IMATNCENCGHR 258 (404)
T ss_dssp EEECCTTTCCTTCE------EEEEECCTTSCCEE--EEEEECSSSCCE
T ss_pred ecccCccCCCccEE------EEEEEeCCCCCcEE--EEEEECCCCCCc
Confidence 45568888864421 11222333588883 445888888875
No 318
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.76 E-value=59 Score=18.56 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=19.6
Q ss_pred Ccceeecc--cCCccccCHHHHHHHHH
Q 022703 2 AGVSLKCG--DCGALLRSVQEAQEHAE 26 (293)
Q Consensus 2 ~~~~LkC~--~Cg~v~~~~~~aq~ha~ 26 (293)
+....+|. .||+.+.....-+.|..
T Consensus 3 ~~k~~~C~~~~C~k~f~~~~~L~~H~~ 29 (38)
T 1bhi_A 3 DDKPFLCTAPGCGQRFTNEDHLAVHKH 29 (38)
T ss_dssp TCCCEECCCTTTCCEESSHHHHHHHHH
T ss_pred CCcceECCCCCCCcccCCHHHHHHHHH
Confidence 34567899 59999988888888864
No 319
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.56 E-value=46 Score=23.47 Aligned_cols=27 Identities=26% Similarity=0.569 Sum_probs=21.7
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccCC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHSN 32 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~~ 32 (293)
...+|..||+.|.....-..|... |+.
T Consensus 12 kpy~C~~CgK~F~~~s~L~~H~r~--Htg 38 (66)
T 2epp_A 12 GILPCGLCGKVFTDANRLRQHEAQ--HGV 38 (66)
T ss_dssp CCCCCTTTCCCCSCHHHHHHHHHH--HTT
T ss_pred cCcCCCCCCCccCCHHHHHhhhhh--hCC
Confidence 457899999999988888888754 665
No 320
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.55 E-value=43 Score=24.64 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=21.7
Q ss_pred ceeecccCCccccCHHHHHHHHHHhccC
Q 022703 4 VSLKCGDCGALLRSVQEAQEHAELTSHS 31 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~~~aq~ha~~TgH~ 31 (293)
..++|..||+.+.....-..|... .|+
T Consensus 61 k~~~C~~Cgk~F~~~~~L~~H~~~-~H~ 87 (96)
T 2ctd_A 61 EMFTCHHCGKQLRSLAGMKYHVMA-NHN 87 (96)
T ss_dssp CCCCCSSSCCCCSSHHHHHHHHHH-HTC
T ss_pred CCeECCCCCCeeCCHHHHHHHhHH-hcC
Confidence 357899999999999999999444 464
No 321
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.50 E-value=57 Score=19.84 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.9
Q ss_pred eeecccCCccccCHHHHHHHHHHh
Q 022703 5 SLKCGDCGALLRSVQEAQEHAELT 28 (293)
Q Consensus 5 ~LkC~~Cg~v~~~~~~aq~ha~~T 28 (293)
.+.|.+|+....+.+-.+.|-+..
T Consensus 3 k~~CpvCk~q~Pd~kt~~~H~e~~ 26 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTLQIHVMEC 26 (28)
T ss_dssp CEECTTSSCEESSHHHHHHHHHHC
T ss_pred cccCccccccCcChHHHHHHHHHH
Confidence 468999999999999999997764
No 322
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=26.29 E-value=20 Score=29.07 Aligned_cols=45 Identities=11% Similarity=0.337 Sum_probs=29.6
Q ss_pred ceeecccCCccc--------------cCHHHHHHHHHHhccCCCCcchhhhhccccCCC
Q 022703 4 VSLKCGDCGALL--------------RSVQEAQEHAELTSHSNFSESTEAVLNLVCATC 48 (293)
Q Consensus 4 ~~LkC~~Cg~v~--------------~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~C 48 (293)
-.++|+.||+.. .+...+.+..+.+.+..|.=-.=-+.-++|.+|
T Consensus 19 ~~V~C~nCgr~vPKDKAIKrf~irNiVeaaavRDi~easv~~~y~lPKlyvKl~YCVSC 77 (119)
T 3u5c_a 19 KPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSC 77 (119)
T ss_dssp CEEECTTTCCEEEGGGSCEEEEEECSSCSSTHHHHHHTCCSSSCCCCCEEEEEECCSHH
T ss_pred ccEeeccccccccccceeeEEeCcCcccHHHHHHHHhccchhhccccceeEEEEEeeee
Confidence 368999999876 556678888888555444311000334899999
No 323
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.29 E-value=54 Score=23.93 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=32.5
Q ss_pred eecccCCccc--cCHHHHHHHHHHhccCCCCcchhhhhccccCCCCCCCCCcccccccccc
Q 022703 6 LKCGDCGALL--RSVQEAQEHAELTSHSNFSESTEAVLNLVCATCGKPCRSKTETDLHRKR 64 (293)
Q Consensus 6 LkC~~Cg~v~--~~~~~aq~ha~~TgH~~F~e~~d~i~~~~C~~Cg~~~~~~~e~~~a~K~ 64 (293)
.+|..||..+ .....-..|.. .|.. + ..|.|+.||+.|........+.+.
T Consensus 51 ~~C~~C~~~f~f~~~~~l~~H~~--~H~~--~-----~~~~C~~C~k~f~~~~~L~~H~~~ 102 (115)
T 2dmi_A 51 ETDNNNPKRWSKPRKRSLLEMEG--KEDA--Q-----KVLKCMYCGHSFESLQDLSVHMIK 102 (115)
T ss_dssp CCCCCCCSCCSSCCCCCCCCCCC--SCCC--C-----SSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred ccCCCCCcccccccHHHHHHHhh--ccCC--C-----cceECCCCCCccCCHHHHHHHHHH
Confidence 3589999877 55544555542 3553 2 338999999888776666666554
No 324
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=26.19 E-value=44 Score=18.15 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=17.2
Q ss_pred eecc--cCCccccCHHHHHHHHH
Q 022703 6 LKCG--DCGALLRSVQEAQEHAE 26 (293)
Q Consensus 6 LkC~--~Cg~v~~~~~~aq~ha~ 26 (293)
.+|. .||+.+.....-+.|..
T Consensus 3 ~~C~~~~C~k~f~~~~~L~~H~~ 25 (31)
T 1sp2_A 3 FMCTWSYCGKRFTRSDELQRHKR 25 (31)
T ss_dssp CBCCSTTCCCBCSSHHHHHHHHT
T ss_pred cCCcCCCCCcccCCHhHHHHHHH
Confidence 5787 89999988888888864
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.32 E-value=18 Score=29.41 Aligned_cols=45 Identities=13% Similarity=0.332 Sum_probs=24.5
Q ss_pred ceeecccCCccccCH----HHHHHHHHHhccCCCCcc-hhhhhccccCCCCC
Q 022703 4 VSLKCGDCGALLRSV----QEAQEHAELTSHSNFSES-TEAVLNLVCATCGK 50 (293)
Q Consensus 4 ~~LkC~~Cg~v~~~~----~~aq~ha~~TgH~~F~e~-~d~i~~~~C~~Cg~ 50 (293)
.-|.|..||.|..=. ...+.... ...+|.=. ..-.+--.|+.|.+
T Consensus 98 ~HliC~~Cg~v~~~~~~~~~~~~~~~~--~~~gf~i~~~~l~~~GiC~~C~~ 147 (150)
T 2xig_A 98 DHIICLHCGKIIEFADPEIENRQNEVV--KKYQAKLISHDMKMFVWCKECQE 147 (150)
T ss_dssp EEEEETTTCCEEEECCHHHHHHHHHHH--HTTTCEEEEEEEEEEEECHHHHC
T ss_pred eEEEECCCCCEEEecCCCHHHHHHHHH--HHcCCEEeeeEEEEEEEChhhcc
Confidence 358899999998422 22222222 23466422 12234456999965
No 326
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.83 E-value=23 Score=26.05 Aligned_cols=10 Identities=50% Similarity=1.192 Sum_probs=8.4
Q ss_pred ccccCCCCCC
Q 022703 42 NLVCATCGKP 51 (293)
Q Consensus 42 ~~~C~~Cg~~ 51 (293)
...||.||++
T Consensus 9 ~~~CP~Cgkp 18 (68)
T 1lv3_A 9 TVNCPTCGKT 18 (68)
T ss_dssp EEECTTTCCE
T ss_pred cCcCCCCCCc
Confidence 3589999997
No 327
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.66 E-value=54 Score=17.83 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=17.4
Q ss_pred eeecc--cCCccccCHHHHHHHHH
Q 022703 5 SLKCG--DCGALLRSVQEAQEHAE 26 (293)
Q Consensus 5 ~LkC~--~Cg~v~~~~~~aq~ha~ 26 (293)
..+|. .||+.+.....-..|..
T Consensus 3 ~~~C~~~~C~k~f~~~~~L~~H~~ 26 (32)
T 1zfd_A 3 PYSCDHPGCDKAFVRNHDLIRHKK 26 (32)
T ss_dssp SBCCCCTTCCCCBSSSHHHHHHHG
T ss_pred CCcCcCCCCCCccCCHHHHHHHHH
Confidence 46788 89999988888888854
No 328
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=23.53 E-value=44 Score=25.01 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHcHHHH-HHHHHHHHHHH
Q 022703 227 EEENERKRILALRKAEKEEE-KRAREKIRQKL 257 (293)
Q Consensus 227 ~ee~e~k~~~e~rrrEK~ee-~~ar~rir~qI 257 (293)
-+-.+..+.++++|++|-.. ...|+.+|+.|
T Consensus 19 ~E~~eAlrqaEE~Rk~Kh~kmE~ERE~mRq~I 50 (79)
T 1l4a_E 19 AAIEEARREAEERRKEKHRKMEEEREEMRQTI 50 (79)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777766443 35688999999
No 329
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=23.44 E-value=73 Score=18.25 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=19.3
Q ss_pred Ccceeecc--cCCccccCHHHHHHHHH
Q 022703 2 AGVSLKCG--DCGALLRSVQEAQEHAE 26 (293)
Q Consensus 2 ~~~~LkC~--~Cg~v~~~~~~aq~ha~ 26 (293)
+....+|. .||+.+.....-+.|..
T Consensus 5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~ 31 (37)
T 1va1_A 5 KKKQHICHIQGCGKVYGKTSHLRAHLR 31 (37)
T ss_dssp SCCCEECCSTTCCCEESCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccCCHHHHHHHHH
Confidence 34567898 49999988888888864
No 330
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=22.43 E-value=14 Score=29.44 Aligned_cols=40 Identities=23% Similarity=0.409 Sum_probs=24.3
Q ss_pred eecccCCccccCHHHHHHHHHHhccCCCCcc-hhhh--hccccCCCCCC
Q 022703 6 LKCGDCGALLRSVQEAQEHAELTSHSNFSES-TEAV--LNLVCATCGKP 51 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~aq~ha~~TgH~~F~e~-~d~i--~~~~C~~Cg~~ 51 (293)
+.|..|...+... ...-.||+ |-.. .... ....||.|..+
T Consensus 54 ~~C~iC~~~~~~~-----~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~ 96 (138)
T 4ayc_A 54 LQCIICSEYFIEA-----VTLNCAHS-FCSYCINEWMKRKIECPICRKD 96 (138)
T ss_dssp SBCTTTCSBCSSE-----EEETTSCE-EEHHHHHHHTTTCSBCTTTCCB
T ss_pred CCCcccCcccCCc-----eECCCCCC-ccHHHHHHHHHcCCcCCCCCCc
Confidence 5699998887543 22358995 4322 1111 12579999886
No 331
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=21.79 E-value=57 Score=26.03 Aligned_cols=41 Identities=20% Similarity=0.558 Sum_probs=33.9
Q ss_pred ccCHHHHHHHHhCCCCHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 022703 112 EVDKELLKELEAMGFPVARATRALHYSGNAN----VEAAVNWVVE 152 (293)
Q Consensus 112 ~~~~~~l~~L~~MGF~~~~a~kAL~~tgn~~----~E~A~~WL~~ 152 (293)
.+.+++...|..+|+|-.....+|..-|+.. +=.|+.||.+
T Consensus 70 ~~eeev~~~lK~L~YP~~isKS~L~a~g~pHsWp~~L~~L~WLve 114 (120)
T 2igp_A 70 KFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLID 114 (120)
T ss_dssp THHHHHHHHHHHTTCCSCCCHHHHHTTTSTTTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCceeCHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 4567889999999999988888888877633 7889999975
No 332
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=21.50 E-value=1.3e+02 Score=22.72 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 022703 249 AREKIRQKLEE 259 (293)
Q Consensus 249 ar~rir~qIe~ 259 (293)
-.+.++++|+.
T Consensus 60 Kl~~~~e~l~~ 70 (86)
T 3nr7_A 60 KLQQYREMLIA 70 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445555544
No 333
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=20.65 E-value=43 Score=26.10 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=33.9
Q ss_pred eecccCCccccCHHH----HHHHHHHhccCCC-Ccc-hhhhh--ccccCCCCCCC---CCccc--ccccccccccccccc
Q 022703 6 LKCGDCGALLRSVQE----AQEHAELTSHSNF-SES-TEAVL--NLVCATCGKPC---RSKTE--TDLHRKRTGHTDFVD 72 (293)
Q Consensus 6 LkC~~Cg~v~~~~~~----aq~ha~~TgH~~F-~e~-~d~i~--~~~C~~Cg~~~---~~~~e--~~~a~K~t~f~tFP~ 72 (293)
|.|-.|..-+.-... +-.=|-.+|...= .+. -++++ .+.|+.||..+ -|-+= ...+.+.+..+.|||
T Consensus 9 LaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~ear~~~~~~~~~~ 88 (97)
T 2k5r_A 9 LCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPEEAIATIQIANFPD 88 (97)
T ss_dssp CCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGGGEEEGGGCTTCCC
T ss_pred eECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChHHhcccccccCCcc
Confidence 689999987743222 1111222222221 111 11222 38999998533 01111 134556666777777
Q ss_pred chh
Q 022703 73 KTS 75 (293)
Q Consensus 73 ~Lv 75 (293)
.|-
T Consensus 89 ~~~ 91 (97)
T 2k5r_A 89 KLE 91 (97)
T ss_dssp CCC
T ss_pred hhh
Confidence 764
No 334
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.27 E-value=29 Score=26.20 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=9.0
Q ss_pred hccccCCCCCC
Q 022703 41 LNLVCATCGKP 51 (293)
Q Consensus 41 ~~~~C~~Cg~~ 51 (293)
..|+||.||+.
T Consensus 26 ~~y~Cp~CG~~ 36 (83)
T 1vq8_Z 26 EDHACPNCGED 36 (83)
T ss_dssp SCEECSSSCCE
T ss_pred ccCcCCCCCCc
Confidence 35899999984
Done!