Query 022704
Match_columns 293
No_of_seqs 222 out of 1576
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03096 glyceraldehyde-3-phos 100.0 5.3E-94 1.1E-98 694.2 24.5 273 18-292 120-394 (395)
2 PTZ00434 cytosolic glyceraldeh 100.0 5.1E-94 1.1E-98 685.3 23.8 270 20-291 75-354 (361)
3 PRK15425 gapA glyceraldehyde-3 100.0 2.7E-93 5.9E-98 677.4 25.4 268 20-290 61-331 (331)
4 PLN02237 glyceraldehyde-3-phos 100.0 3.3E-93 7.2E-98 693.8 23.8 270 20-291 137-411 (442)
5 PRK07403 glyceraldehyde-3-phos 100.0 6.1E-93 1.3E-97 676.1 24.8 272 20-293 62-337 (337)
6 PRK08955 glyceraldehyde-3-phos 100.0 4.9E-93 1.1E-97 677.3 22.6 271 19-291 61-333 (334)
7 PLN02358 glyceraldehyde-3-phos 100.0 1.7E-92 3.8E-97 674.4 25.6 268 20-290 67-337 (338)
8 PLN02272 glyceraldehyde-3-phos 100.0 3.6E-92 7.7E-97 685.0 25.5 269 20-291 146-417 (421)
9 PTZ00023 glyceraldehyde-3-phos 100.0 1.7E-91 3.6E-96 666.6 24.3 270 20-291 62-336 (337)
10 PRK13535 erythrose 4-phosphate 100.0 2.5E-91 5.3E-96 665.8 24.9 270 19-290 62-334 (336)
11 PRK07729 glyceraldehyde-3-phos 100.0 2.9E-90 6.3E-95 658.7 25.4 270 20-291 61-333 (343)
12 TIGR01534 GAPDH-I glyceraldehy 100.0 1E-88 2.3E-93 646.0 22.1 261 21-283 61-327 (327)
13 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.3E-87 2.9E-92 638.5 23.6 264 18-283 59-325 (325)
14 PTZ00353 glycosomal glyceralde 100.0 8.3E-87 1.8E-91 634.7 24.5 267 20-291 63-336 (342)
15 PRK08289 glyceraldehyde-3-phos 100.0 8E-87 1.7E-91 651.1 23.9 268 21-291 197-471 (477)
16 COG0057 GapA Glyceraldehyde-3- 100.0 1.3E-83 2.8E-88 605.1 26.0 271 20-292 61-334 (335)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 1.2E-67 2.5E-72 483.7 12.2 237 20-291 46-285 (285)
18 PF02800 Gp_dh_C: Glyceraldehy 100.0 8.6E-51 1.9E-55 350.5 11.4 157 115-271 1-157 (157)
19 PRK06901 aspartate-semialdehyd 100.0 1.4E-47 3E-52 361.8 16.9 197 18-223 40-254 (322)
20 COG0136 Asd Aspartate-semialde 100.0 6.8E-44 1.5E-48 337.6 16.7 261 16-286 36-331 (334)
21 TIGR01745 asd_gamma aspartate- 100.0 1E-43 2.3E-48 341.6 13.4 201 18-223 38-298 (366)
22 PRK06728 aspartate-semialdehyd 100.0 9.9E-40 2.1E-44 312.8 16.4 257 18-291 43-344 (347)
23 TIGR01296 asd_B aspartate-semi 100.0 6.7E-40 1.5E-44 313.3 14.1 200 17-223 35-272 (339)
24 TIGR01546 GAPDH-II_archae glyc 100.0 2E-39 4.4E-44 309.0 17.1 185 22-224 54-243 (333)
25 PRK14874 aspartate-semialdehyd 100.0 1.2E-38 2.6E-43 303.8 14.3 197 17-222 37-268 (334)
26 PRK06598 aspartate-semialdehyd 100.0 1.8E-38 3.8E-43 306.0 13.7 202 18-223 39-300 (369)
27 PRK04207 glyceraldehyde-3-phos 100.0 3.5E-37 7.6E-42 294.8 16.5 203 26-248 61-273 (341)
28 PRK08040 putative semialdehyde 100.0 4.3E-33 9.3E-38 266.3 19.9 255 18-289 41-331 (336)
29 PRK05671 aspartate-semialdehyd 100.0 2E-32 4.4E-37 261.7 17.2 257 18-289 41-332 (336)
30 PLN02383 aspartate semialdehyd 100.0 3.1E-32 6.8E-37 261.1 15.1 198 18-222 44-276 (344)
31 TIGR00978 asd_EA aspartate-sem 100.0 6.2E-29 1.4E-33 237.6 15.4 187 46-241 71-282 (341)
32 PRK08664 aspartate-semialdehyd 99.9 6.5E-27 1.4E-31 224.3 19.0 193 17-224 38-268 (349)
33 PRK00436 argC N-acetyl-gamma-g 99.9 2.5E-24 5.4E-29 206.2 17.9 233 46-288 66-327 (343)
34 TIGR01850 argC N-acetyl-gamma- 99.9 1.8E-24 3.8E-29 207.6 13.8 260 18-289 36-331 (346)
35 KOG4777 Aspartate-semialdehyde 99.9 3E-25 6.4E-30 203.4 7.5 205 3-223 28-277 (361)
36 PLN02968 Probable N-acetyl-gam 99.9 5.1E-23 1.1E-27 200.0 16.4 202 17-223 72-302 (381)
37 smart00846 Gp_dh_N Glyceraldeh 99.8 1.2E-19 2.7E-24 155.3 9.4 89 20-110 59-149 (149)
38 PF00044 Gp_dh_N: Glyceraldehy 99.8 6.7E-20 1.5E-24 157.5 5.4 88 21-110 61-151 (151)
39 PRK11863 N-acetyl-gamma-glutam 99.8 2.6E-18 5.7E-23 163.1 12.7 174 45-224 47-237 (313)
40 TIGR01851 argC_other N-acetyl- 99.7 2E-16 4.4E-21 149.9 11.4 174 46-223 47-237 (310)
41 PRK08300 acetaldehyde dehydrog 99.4 1E-13 2.2E-18 131.2 6.3 160 44-224 66-230 (302)
42 PF02774 Semialdhyde_dhC: Semi 99.4 1.6E-12 3.4E-17 114.5 7.7 103 119-222 1-132 (184)
43 TIGR03215 ac_ald_DH_ac acetald 99.0 5E-10 1.1E-14 105.5 5.1 101 47-151 63-168 (285)
44 COG0002 ArgC Acetylglutamate s 98.6 6.4E-07 1.4E-11 86.2 13.8 172 46-225 68-272 (349)
45 PF01118 Semialdhyde_dh: Semia 98.5 5.4E-09 1.2E-13 85.8 -2.8 73 19-98 36-118 (121)
46 smart00859 Semialdhyde_dh Semi 97.4 9.1E-05 2E-09 60.3 1.9 80 17-98 34-120 (122)
47 KOG4354 N-acetyl-gamma-glutamy 95.7 0.028 6.1E-07 52.6 6.5 197 71-282 109-318 (340)
48 COG4569 MhpF Acetaldehyde dehy 92.0 0.27 5.9E-06 45.1 5.0 76 44-124 67-144 (310)
49 PF03447 NAD_binding_3: Homose 75.5 2.3 5E-05 34.0 2.4 32 47-80 58-89 (117)
50 PRK13301 putative L-aspartate 73.2 2.3 4.9E-05 40.2 2.0 40 41-80 55-94 (267)
51 PF02192 PI3K_p85B: PI3-kinase 54.8 21 0.00044 27.6 3.9 35 202-236 2-37 (78)
52 COG1712 Predicted dinucleotide 53.5 9 0.00019 35.8 2.0 36 47-82 59-94 (255)
53 PRK13303 L-aspartate dehydroge 44.7 19 0.00042 33.4 2.8 34 47-81 60-93 (265)
54 cd08230 glucose_DH Glucose deh 43.1 34 0.00074 32.3 4.3 77 47-124 237-315 (355)
55 PF07683 CobW_C: Cobalamin syn 43.0 31 0.00068 26.1 3.4 46 201-246 3-51 (94)
56 PF00107 ADH_zinc_N: Zinc-bind 42.1 6.9 0.00015 31.1 -0.5 36 47-82 57-92 (130)
57 smart00833 CobW_C Cobalamin sy 38.4 54 0.0012 24.5 4.0 49 201-249 3-55 (92)
58 TIGR03855 NAD_NadX aspartate d 37.3 30 0.00065 31.7 2.8 31 47-78 36-66 (229)
59 PRK06349 homoserine dehydrogen 37.2 32 0.00069 34.3 3.2 35 46-81 70-105 (426)
60 cd04885 ACT_ThrD-I Tandem C-te 35.4 1.7E+02 0.0036 21.0 7.0 57 164-221 5-61 (68)
61 PF05368 NmrA: NmrA-like famil 32.6 35 0.00075 30.1 2.4 36 46-81 62-103 (233)
62 PRK13304 L-aspartate dehydroge 27.9 57 0.0012 30.2 3.1 31 47-78 60-90 (265)
63 TIGR03366 HpnZ_proposed putati 27.3 56 0.0012 29.8 2.9 74 47-124 186-260 (280)
64 PRK04435 hypothetical protein; 26.8 2E+02 0.0044 24.4 6.0 66 154-221 65-131 (147)
65 cd04886 ACT_ThrD-II-like C-ter 25.9 2.2E+02 0.0048 19.3 6.4 57 165-221 6-66 (73)
66 PRK06270 homoserine dehydrogen 23.1 1.2E+02 0.0025 29.3 4.3 72 47-125 88-166 (341)
67 COG1063 Tdh Threonine dehydrog 22.6 64 0.0014 31.0 2.4 36 47-82 237-272 (350)
68 TIGR01921 DAP-DH diaminopimela 22.6 7.2E+02 0.016 24.2 10.6 32 47-79 59-90 (324)
69 smart00143 PI3K_p85B PI3-kinas 22.6 76 0.0016 24.6 2.3 30 202-231 2-32 (78)
70 PRK13587 1-(5-phosphoribosyl)- 21.9 1E+02 0.0022 28.1 3.5 32 49-80 75-106 (234)
71 PRK13302 putative L-aspartate 20.9 95 0.0021 28.9 3.1 28 46-73 65-92 (271)
72 PLN00106 malate dehydrogenase 20.7 1.3E+02 0.0029 29.0 4.1 84 46-133 84-186 (323)
73 PRK06392 homoserine dehydrogen 20.5 1.2E+02 0.0027 29.2 3.9 33 47-81 80-116 (326)
No 1
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=5.3e-94 Score=694.23 Aligned_cols=273 Identities=83% Similarity=1.198 Sum_probs=263.2
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCc
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNA 95 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~ 95 (293)
.++|+.|.|+|+.+.| .++.+++.++| .|+||||||||.|.++++|++|+++|||||+||+|+++++||||||||+
T Consensus 120 ~~~g~~l~v~gk~I~v--~~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~ 197 (395)
T PLN03096 120 PVGDDAISVDGKVIKV--VSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNA 197 (395)
T ss_pred EecCCEEEECCEEEEE--EEcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCH
Confidence 3679999999999877 56677788889 6999999999999999999999999999999999987789999999999
Q ss_pred CCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHH
Q 022704 96 DAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 175 (293)
Q Consensus 96 ~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~ 175 (293)
+.|+++++||||||||||||+|++|+|||+|||++++|||||+||++|+++|++++|+||+|++++||||++||++++++
T Consensus 198 ~~l~~~~~IISnaSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~~d~rr~Raaa~NiIPtsTGaakav~ 277 (395)
T PLN03096 198 DDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 277 (395)
T ss_pred HHhccCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEccccccccccCCCCccccchhhhccccccCCCcchhhh
Confidence 99987789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCC
Q 022704 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 255 (293)
Q Consensus 176 kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~ 255 (293)
||||+|+||++++||||||++||++||++++++++++||||++|+++++|+|||||+|+++|+||+||+|++||+|||+.
T Consensus 278 kVlP~L~gkl~g~avRVPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~ 357 (395)
T PLN03096 278 LVLPNLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSS 357 (395)
T ss_pred hcccccCCcEEEEEEEccccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhccC
Q 022704 256 LTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 292 (293)
Q Consensus 256 ~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~~ 292 (293)
+|++++++++|+++||||||||||||+|+++||.+..
T Consensus 358 ~t~v~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~~ 394 (395)
T PLN03096 358 LTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANKW 394 (395)
T ss_pred cCEEeCCCEEEEEEEecCchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999998754
No 2
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-94 Score=685.34 Aligned_cols=270 Identities=45% Similarity=0.722 Sum_probs=257.3
Q ss_pred CCceeEECCEEEEEEEe-ecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcC
Q 022704 20 ASLKPMLNQLVLMASLL-MARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD 96 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~-~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~ 96 (293)
.+..|.++|+.+.+ + +++++.+.+|. |+|||+||||.|++++.|++|+++||||||||+|++++.|+||+|||++
T Consensus 75 ~~~~l~ing~~I~~--~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~ 152 (361)
T PTZ00434 75 TDDVLVVNGHRIKC--VKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQH 152 (361)
T ss_pred cCCEEEECCEEEEE--EEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChH
Confidence 46789999999765 4 77788888887 9999999999999999999999999999999999965568999999999
Q ss_pred CCCC-CCCeeeCCCcchhhhhhHHHHH-hhhcCccEEEEeeecccccchhhhccc-hhhHHhhhhcccccccCCCchHHH
Q 022704 97 AYKP-DEPIISNASCTTNCLAPFVKVL-DQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKA 173 (293)
Q Consensus 97 ~~~~-~~~IISn~sCtTn~lap~lk~L-~~~fgI~~~~~TT~havsg~q~~~d~~-~~d~r~~r~~a~NIIP~~tGa~k~ 173 (293)
.|++ .++||||+|||||||+|++|+| ||+|||++++|||+|+||++|+++|++ ++||||+|++++||||++||++|+
T Consensus 153 ~y~~~~~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkA 232 (361)
T PTZ00434 153 EYSPTEHHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKA 232 (361)
T ss_pred HcCcccCcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhh
Confidence 9997 5789999999999999999999 799999999999999999999999999 599999999999999999999999
Q ss_pred HHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEe
Q 022704 174 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVD 253 (293)
Q Consensus 174 ~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d 253 (293)
++++||+|+||++|+++||||++||++||+++++|++++||||++|++|++++|||||+|+|+|+||+||+|++||+|||
T Consensus 233 v~~VlP~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D 312 (361)
T PTZ00434 233 VGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYD 312 (361)
T ss_pred hceeccccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeC----CceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 254 SSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 254 ~~~t~~~~----~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
+.+|++++ ++++|+++||||||||||||+||+.||.+.
T Consensus 313 ~~~t~v~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~ 354 (361)
T PTZ00434 313 SKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAK 354 (361)
T ss_pred hhhCeEeccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence 99999996 489999999999999999999999999764
No 3
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=2.7e-93 Score=677.43 Aligned_cols=268 Identities=44% Similarity=0.720 Sum_probs=257.5
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.+.+|.|+|+.+.| .++.+++.++|+ |+|+||||||.|+++++|++|+++|||||++|+|+++++||||||||++.
T Consensus 61 ~~~~l~v~g~~I~v--~~~~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~ 138 (331)
T PRK15425 61 KDGHLIVNGKKIRV--TAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDK 138 (331)
T ss_pred cCCEEEECCeEEEE--EEcCChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHH
Confidence 47789999999877 455677888999 99999999999999999999999999999999998777899999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccc-hhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~-~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|+. ++||||||||||||+|++|+||++|||++++||||||+|++|+++|++ ++++||+|++++||||++||++++++|
T Consensus 139 ~~~-~~IISnaSCtTn~Lapvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~k 217 (331)
T PRK15425 139 YAG-QDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGK 217 (331)
T ss_pred cCC-CCEEECCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHh
Confidence 975 789999999999999999999999999999999999999999999997 489999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
|||+|+||++++|+||||++||++||++++++++++||++++|+++++|+|||||+|+++|+||+||+|++||+|||+.+
T Consensus 218 IlP~L~gkl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~ 297 (331)
T PRK15425 218 VLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKA 297 (331)
T ss_pred hccccCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~ 290 (293)
|++++++++|+++||||||||||||+|+++||.+
T Consensus 298 t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 331 (331)
T PRK15425 298 GIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331 (331)
T ss_pred CEEecCCEEEEEEEecCchhHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999964
No 4
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=3.3e-93 Score=693.79 Aligned_cols=270 Identities=75% Similarity=1.087 Sum_probs=258.7
Q ss_pred CCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCC-CCCeEEecCCcC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNAD 96 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~-dvPlvVpgVN~~ 96 (293)
.+++|.|+|+++.| .++.++..++| .|+||||||||.|++++++++|+++|||||+||+|.++ ++||||||||++
T Consensus 137 ~~~~L~v~Gk~I~V--~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~ 214 (442)
T PLN02237 137 DDETISVDGKPIKV--VSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNED 214 (442)
T ss_pred CCCEEEECCEEEEE--EEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHH
Confidence 47889999999877 34446667889 79999999999999999999999999999999999854 689999999999
Q ss_pred CCCCC-CCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHH
Q 022704 97 AYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 175 (293)
Q Consensus 97 ~~~~~-~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~ 175 (293)
.|++. ++||||||||||||+|++|+||++|||++++|||||+||++|+++|++|+||||+|++++||||++||++|+++
T Consensus 215 ~~~~~~~~IISnaSCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h~D~Rr~Raaa~nIIPtsTGAAkAv~ 294 (442)
T PLN02237 215 DYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVS 294 (442)
T ss_pred HhCcCCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCCcccccccccccccccCCcchhhhhc
Confidence 99876 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccCCCeeEEEEecCCCeeeEEEEEEEecC-cCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeC
Q 022704 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSK-KTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 254 (293)
Q Consensus 176 kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k-~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~ 254 (293)
++||+|+||++|+++||||++||++||+++++| ++++||||++|+++++|+|||||+|+|+|+||+||+|++||+|||+
T Consensus 295 ~VlP~L~GKl~g~A~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~ 374 (442)
T PLN02237 295 LVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDA 374 (442)
T ss_pred eecccCCCceeeEEEecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEc
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 255 SLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 255 ~~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
.+|++++++++|+++||||||||||||+||+.||.++
T Consensus 375 ~~t~v~~~~~vKv~aWYDNEwGys~R~~dl~~~~~~~ 411 (442)
T PLN02237 375 SLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAK 411 (442)
T ss_pred ccCEEeCCCEEEEEEEeCCchhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999864
No 5
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=6.1e-93 Score=676.09 Aligned_cols=272 Identities=69% Similarity=1.007 Sum_probs=260.9
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCC-CCCeEEecCCcC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNAD 96 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~-dvPlvVpgVN~~ 96 (293)
.|+.|.|+|+++.| +++.+++.++|+ |+|+||||||.|++++++++|+++|||||++|+|.++ |+||||||||++
T Consensus 62 ~~~~l~v~g~~I~v--~~~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~ 139 (337)
T PRK07403 62 DENSITVNGKTIKC--VSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHH 139 (337)
T ss_pred cCCEEEECCEEEEE--EEcCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHH
Confidence 57889999999877 566777889999 9999999999999999999999999999999999753 679999999999
Q ss_pred CCCC-CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHH
Q 022704 97 AYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 175 (293)
Q Consensus 97 ~~~~-~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~ 175 (293)
.|++ .++||||||||||||+|++|+||++|||++++||||||+|++|+++|++++||||+|++++||||++||++|+++
T Consensus 140 ~~~~~~~~IISnasCTTn~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~tGaakav~ 219 (337)
T PRK07403 140 EYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVA 219 (337)
T ss_pred HhccCCCCEEECCcHHHHHHHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccccccccccccccccccCCcchhhhhh
Confidence 9985 478999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCC
Q 022704 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 255 (293)
Q Consensus 176 kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~ 255 (293)
++||+|+||++++|+||||+++|++||+++++|++++|||+++|+++++++|||||+|+++|+||+||+|||||+|||+.
T Consensus 220 ~vlP~L~gki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~ 299 (337)
T PRK07403 220 LVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDAS 299 (337)
T ss_pred hcCcccCCcEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhccCC
Q 022704 256 LTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 293 (293)
Q Consensus 256 ~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~~~ 293 (293)
+|++++++++|+++||||||||||||+||++||.++.|
T Consensus 300 ~t~v~~~~~~k~~~WyDNE~Gys~r~~dl~~~~~~~~~ 337 (337)
T PRK07403 300 LTMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVARKWK 337 (337)
T ss_pred cCEEecCCEEEEEEEecCchhHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999987644
No 6
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=4.9e-93 Score=677.26 Aligned_cols=271 Identities=42% Similarity=0.667 Sum_probs=260.1
Q ss_pred CCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC-CCCCeEEecCCcCC
Q 022704 19 SASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADA 97 (293)
Q Consensus 19 s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~-~dvPlvVpgVN~~~ 97 (293)
|+|+.|.|+|+.+.| .++.+++.++|+|+|+||||||.|+++++|++|+++|||||++|+|++ +|+||||||||++.
T Consensus 61 ~~g~~l~~~g~~i~v--~~~~~~~~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~ 138 (334)
T PRK08955 61 AEGDAIVINGKRIRT--TQNKAIADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHL 138 (334)
T ss_pred EcCCEEEECCEEEEE--EecCChhhCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHH
Confidence 689999999999877 455577889999999999999999999999999999999999999974 46899999999999
Q ss_pred CCCC-CCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~~-~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|+++ ++||||||||||||+|++|+||++|||++++|||||++|++|+++|++++|+||+|++++||||++||++++++|
T Consensus 139 ~~~~~~~IISnasCtTn~Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tGaa~a~~k 218 (334)
T PRK08955 139 FDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITE 218 (334)
T ss_pred hcccCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCCcccccchhheeccccccCCCccccce
Confidence 9874 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
|||+|+||++++|+||||++||++||++++++++++|||+++|+++++++|||||+|+|+|+||+||+|++||+|||+.+
T Consensus 219 vlP~L~gkl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~ 298 (334)
T PRK08955 219 IFPELKGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALS 298 (334)
T ss_pred EccccCCcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|.+++++++|+++||||||||||||+||+.||...
T Consensus 299 t~~~~~~~~k~~~WyDNE~gys~r~~dl~~~~~~~ 333 (334)
T PRK08955 299 TMVVNGTQVKLYAWYDNEWGYANRTAELARKVGLA 333 (334)
T ss_pred CEEecCCEEEEEEEeCCchhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999753
No 7
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.7e-92 Score=674.45 Aligned_cols=268 Identities=46% Similarity=0.743 Sum_probs=257.2
Q ss_pred CCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
+|+.|.|+|+++.|. ++.+++.++| .|+||||||||.|+++++|++|+++|||||+||+|+ +|+|+||||||++.
T Consensus 67 ~g~~l~~~g~~i~v~--~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~-~dvp~iV~gVN~~~ 143 (338)
T PLN02358 67 DDKTLLFGEKPVTVF--GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAPMFVVGVNEHE 143 (338)
T ss_pred CCCEEEECCEEEEEE--EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCC-CCCCeEecCcCHHH
Confidence 688999999998773 4455667888 799999999999999999999999999999999998 46899999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccc-hhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~-~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|+++++||||||||||||+|++|+||++|||++++||||||+|++|+++|++ ++++||+|++++||||++||++++++|
T Consensus 144 ~~~~~~IISnasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~k 223 (338)
T PLN02358 144 YKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGK 223 (338)
T ss_pred hCCCCCEEECCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhh
Confidence 9877899999999999999999999999999999999999999999999997 589999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
|||+|+||++++|+||||++||++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|+|||+|||+.+
T Consensus 224 IlP~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~ 303 (338)
T PLN02358 224 VLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKA 303 (338)
T ss_pred ccccCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~ 290 (293)
|++++++++|+++||||||||||||+||++||.+
T Consensus 304 t~~~~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 304 GIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred CeEecCCEEEEEEEecCchhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999964
No 8
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.6e-92 Score=685.02 Aligned_cols=269 Identities=45% Similarity=0.711 Sum_probs=257.7
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.+.+|.|+|+++.| .++.+++.++|+ ++||||||||.|+++++|++|+++||||||||+|+ +|+|+||||||++.
T Consensus 146 ~~~~l~~~G~~I~V--~~~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~-~dvPlvV~gVN~~~ 222 (421)
T PLN02272 146 DDSTLEINGKQIKV--TSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPS-ADAPMFVVGVNEKT 222 (421)
T ss_pred cCCEEEECCEEEEE--EecCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCC-CCCCeEEeccCHHH
Confidence 47789999999877 355567788898 99999999999999999999999999999999997 47899999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccc-hhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~-~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|+++++||||||||||||+|++|+||++|||++++|||||++|++|+++|++ ++++|++|++++||||++||++++++|
T Consensus 223 l~~~~~IISnaSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~k 302 (421)
T PLN02272 223 YKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGK 302 (421)
T ss_pred hCCCCCeeeCCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhh
Confidence 9877899999999999999999999999999999999999999999999997 589999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
|||+|+||++++||||||++||++||++++++++++|||+++|+++++|+|||||+|+|+|+||+||+|++||+|||+.+
T Consensus 303 VLP~L~gkl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~ 382 (421)
T PLN02272 303 VLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKA 382 (421)
T ss_pred cccccCCcEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|++++++++|+++||||||||||||+|++.||.+.
T Consensus 383 t~~~~~~~vKv~~WYDNEwGys~R~~dl~~~~~~~ 417 (421)
T PLN02272 383 GIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 417 (421)
T ss_pred CeEecCCEEEEEEEecCchhHHHHHHHHHHHHHhh
Confidence 99999899999999999999999999999999763
No 9
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-91 Score=666.59 Aligned_cols=270 Identities=44% Similarity=0.729 Sum_probs=258.9
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.+..|.++|+.+.+ +++.++....|+ |+|+||||||.|+++++|+.|+++|||+|++|+|.++++|+||||||++.
T Consensus 62 ~~~~l~i~g~~i~~--~~~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~ 139 (337)
T PTZ00023 62 TDGFLMIGSKKVHV--FFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQ 139 (337)
T ss_pred cCCEEEECCeEEEE--EeCCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHH
Confidence 46779999999766 677888888886 99999999999999999999999999999999998778899999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccc---hhhHHhhhhcccccccCCCchHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS---HRDLRRARAAALNIVPTSTGAAKAV 174 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~---~~d~r~~r~~a~NIIP~~tGa~k~~ 174 (293)
|++.++||||||||||||+|++|+||++|||+++.||||||+|.+|.++|++ +++|||+|++++||||++||+++++
T Consensus 140 ~~~~~~IISnasCTTn~Lap~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav 219 (337)
T PTZ00023 140 YDKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAV 219 (337)
T ss_pred hCCCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhh
Confidence 9877789999999999999999999999999999999999999999999986 4789999999999999999999999
Q ss_pred HHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeC
Q 022704 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 254 (293)
Q Consensus 175 ~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~ 254 (293)
+||||+|+||++++|+||||++||++||++++++++++|||+++|+++++|+|||||+|+++|+||+||+|||||+|||+
T Consensus 220 ~kVlPeL~gkl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~ 299 (337)
T PTZ00023 220 GKVIPELNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDV 299 (337)
T ss_pred hheecccCCcEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 255 SLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 255 ~~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
.+|++++++++|+++||||||||||||+|+++||.++
T Consensus 300 ~~t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~~ 336 (337)
T PTZ00023 300 KAGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQK 336 (337)
T ss_pred ccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHhhc
Confidence 9999999899999999999999999999999999764
No 10
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-91 Score=665.81 Aligned_cols=270 Identities=39% Similarity=0.612 Sum_probs=259.0
Q ss_pred CCCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC-CCCCeEEecCCc
Q 022704 19 SASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNA 95 (293)
Q Consensus 19 s~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~-~dvPlvVpgVN~ 95 (293)
++|++|.|+|+.+.| .++.+++.++| .++|+||||||.|+++++|++|+++|||+|++|+|++ +..++||||||+
T Consensus 62 ~~~~~l~v~g~~i~v--~~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~ 139 (336)
T PRK13535 62 QERDQLFVGDDAIRL--LHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNH 139 (336)
T ss_pred ecCCEEEECCEEEEE--EEcCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCH
Confidence 789999999999877 45567788889 7999999999999999999999999999999999984 323599999999
Q ss_pred CCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHH
Q 022704 96 DAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 175 (293)
Q Consensus 96 ~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~ 175 (293)
+.|++.++||||||||||||+|++|+||++|||++++||||||+|++|+++|++++++|++|.+++||||++||++++++
T Consensus 140 ~~~~~~~~IISnasCTTn~Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~~d~rr~r~~a~NiIP~~tgaa~a~~ 219 (336)
T PRK13535 140 DQLRAEHRIVSNASCTTNCIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGIT 219 (336)
T ss_pred HHhCcCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchhhccccccEeeeccccCccHHHhhhh
Confidence 99987789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCC
Q 022704 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 255 (293)
Q Consensus 176 kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~ 255 (293)
||||+|+||++++||||||++||++||++++++++++||++++|+++++|+|||||+|+++|+||+||+|++||+|||+.
T Consensus 220 kilP~l~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~ 299 (336)
T PRK13535 220 RIFPQFNDRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGT 299 (336)
T ss_pred hcccCCCCcEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhc
Q 022704 256 LTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290 (293)
Q Consensus 256 ~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~ 290 (293)
+|++++++++|+++||||||||||||+|++.||..
T Consensus 300 ~t~~~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 300 QTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAA 334 (336)
T ss_pred cCEEECCCEEEEEEEEcCchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999964
No 11
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.9e-90 Score=658.67 Aligned_cols=270 Identities=54% Similarity=0.811 Sum_probs=258.0
Q ss_pred CCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|++|.|+|+.+.| +++++++.++| .++||||||||.|+++++|+.|+++|||+|++|+|.+++++++|+|||++.
T Consensus 61 ~~~~l~v~g~~I~v--~~~~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~ 138 (343)
T PRK07729 61 FEDHLLVDGKKIRL--LNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQ 138 (343)
T ss_pred cCCEEEECCEEEEE--EEcCChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHH
Confidence 58899999999877 57778889999 799999999999999999999999999999999998543445688999999
Q ss_pred CCC-CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~-~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|++ .++||||||||||||+|++|+||++|||++++||||||+|++|+++|+++++||++|++++||||++||+++++++
T Consensus 139 ~~~~~~~IISnaSCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~~d~rr~R~a~~niiPtstgaa~ai~~ 218 (343)
T PRK07729 139 LDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAK 218 (343)
T ss_pred hccCCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEecccCcccccccchhhhhcccccccceecCCCcchhhHHH
Confidence 987 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+||++|+|+||||++||++||++++++++++|||+++|+++++|+|||||+|+++|+||+||+|+|||+|||+.+
T Consensus 219 viP~l~gkl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~ 298 (343)
T PRK07729 219 VLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLS 298 (343)
T ss_pred hccccCCeEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|++++++++|+++||||||||||||+||+.||.+.
T Consensus 299 t~v~~~~~~K~~~WYDNE~Gys~r~~dl~~~~~~~ 333 (343)
T PRK07729 299 TMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADE 333 (343)
T ss_pred CeEecCCEEEEEEEecCchHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999764
No 12
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=1e-88 Score=645.98 Aligned_cols=261 Identities=59% Similarity=0.871 Sum_probs=249.3
Q ss_pred Cc-eeEECCE-EEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcC
Q 022704 21 SL-KPMLNQL-VLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD 96 (293)
Q Consensus 21 g~-~~~f~g~-~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~ 96 (293)
+. +|.|+|+ .+.| .++.+++.++|+ |+||||||||.|+++++|++|+++|||||++|+|+++++||||||||++
T Consensus 61 ~~~~l~i~g~~~i~v--~~~~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~ 138 (327)
T TIGR01534 61 EDKGLVVNGKFVIVV--ASERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHD 138 (327)
T ss_pred CCceEEECCeEEEEE--EecCCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHH
Confidence 45 6999999 8766 455677888899 9999999999999999999999999999999999854489999999999
Q ss_pred CCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 97 AYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 97 ~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
.|+.+++||||||||||||+|+||+||++|||+++.||||||+|++|+++|++++++|++|++++||||+++|++++++|
T Consensus 139 ~~~~~~~IISn~sCtTn~Lap~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tg~ak~~~k 218 (327)
T TIGR01534 139 EYDPEERIISNASCTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGK 218 (327)
T ss_pred HhCCCCCEEecCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCccccccCCCCCCcCceEeEeeeeccCCChHHHHhh
Confidence 99877789999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
|||+|+||++++|+||||++||++|+++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+
T Consensus 219 vlP~L~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~ 298 (327)
T TIGR01534 219 VLPELAGKLTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATA 298 (327)
T ss_pred ccccCCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceee--CCceEEEEEEeCCCCchhhhHHH
Q 022704 257 TLVM--GDDMVKVIAWYDNEWGYSQRVVD 283 (293)
Q Consensus 257 t~~~--~~~~vkl~~WyDNE~gys~r~~d 283 (293)
|+++ +++++|+++||||||||||||+|
T Consensus 299 t~~~~~~~~~~k~~~WyDNE~gys~r~~d 327 (327)
T TIGR01534 299 TKVTGLGGSLVKVVAWYDNEWGYSNRVVD 327 (327)
T ss_pred CeEEcCCCCEEEEEEEeCCCceeeeEccC
Confidence 9995 48999999999999999999986
No 13
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.3e-87 Score=638.49 Aligned_cols=264 Identities=40% Similarity=0.639 Sum_probs=252.1
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC-CCCCeEEecCC
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVN 94 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~-~dvPlvVpgVN 94 (293)
-++|+.|.|+|+.+.+ +++.+++.++| .++|+||||||.|.+++++++|+++||++|++|+|+. +..++||||||
T Consensus 59 ~~~~~~l~v~g~~i~v--~~~~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN 136 (325)
T TIGR01532 59 KVDGDCLHVNGDCIRV--LHSPTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVN 136 (325)
T ss_pred EEeCCEEEECCeEEEE--EEcCChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccC
Confidence 3689999999999877 56667778889 7999999999999999999999999999999999974 22359999999
Q ss_pred cCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHH
Q 022704 95 ADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 174 (293)
Q Consensus 95 ~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~ 174 (293)
++.|++.++||||||||||||+|++|+||++|||+++.||||||+|++|+++|++++++|++|.+++||||+.||+++++
T Consensus 137 ~~~~~~~~~IISnasCtTn~lap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~~d~r~~r~a~~NiIP~~t~~a~a~ 216 (325)
T TIGR01532 137 QQDLSAEHTIVSNASCTTNCIVPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYHHDLRRTRAASQSIIPVDTKLARGI 216 (325)
T ss_pred HHHhCCCCCEEeCCCcHHHHHHHHHHHHHHhcCeeEEEEEEEEhhcCCccccccchhhccccchHhhCeeeCCccHHHHH
Confidence 99998778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeC
Q 022704 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 254 (293)
Q Consensus 175 ~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~ 254 (293)
+||||+|+||++++||||||++||++||++++++++++||++++|+++++|+|||||+|+++|+||+||+||+||+|||+
T Consensus 217 ~kilP~L~gkl~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~ 296 (325)
T TIGR01532 217 ERLFPEFAGRFEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDG 296 (325)
T ss_pred HHhCcccCCeEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeCCceEEEEEEeCCCCchhhhHHH
Q 022704 255 SLTLVMGDDMVKVIAWYDNEWGYSQRVVD 283 (293)
Q Consensus 255 ~~t~~~~~~~vkl~~WyDNE~gys~r~~d 283 (293)
.+|++++++++|+++||||||||||||+|
T Consensus 297 ~~t~~~~~~~~k~~~WyDNE~gys~r~~d 325 (325)
T TIGR01532 297 TQTRVSGPRLVKLLVWCDNEWGFANRMLD 325 (325)
T ss_pred ccCEEecCCEEEEEEEeCCcceeeeEccC
Confidence 99999999999999999999999999987
No 14
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=8.3e-87 Score=634.75 Aligned_cols=267 Identities=23% Similarity=0.373 Sum_probs=252.5
Q ss_pred CCceeEECC-EEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcC
Q 022704 20 ASLKPMLNQ-LVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD 96 (293)
Q Consensus 20 ~g~~~~f~g-~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~ 96 (293)
.+..|.++| +.+.+ +++.+++.++|+ ++|+||||||.|++++.+.+|+++|||||||++|++ |+||||||||++
T Consensus 63 ~~~~l~i~g~~~i~~--~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~-d~p~vV~gVN~~ 139 (342)
T PTZ00353 63 VGEQIVLNGTQKIRV--SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA-DAPTVMAGSNDE 139 (342)
T ss_pred cCCEEecCCCeEEEE--EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC-CCCeEEecCChH
Confidence 367799998 88765 677888889999 999999999999999999999999999999999995 689999999999
Q ss_pred CCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccc---hhhHHhhhhcccccccCCCchHHH
Q 022704 97 AYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS---HRDLRRARAAALNIVPTSTGAAKA 173 (293)
Q Consensus 97 ~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~---~~d~r~~r~~a~NIIP~~tGa~k~ 173 (293)
.|+++++||||||||||||+|++|+|||+|||++++|||||+|+ +|...|++ ++++|++|.|++||||++||++++
T Consensus 140 ~~~~~~~IISnaSCTTn~LapvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaaka 218 (342)
T PTZ00353 140 RLSASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAET 218 (342)
T ss_pred HcCCCCCEEECCCHHHHHHHHHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhh
Confidence 99877789999999999999999999999999999999999997 67777774 489999999999999999999999
Q ss_pred HHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEe
Q 022704 174 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVD 253 (293)
Q Consensus 174 ~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d 253 (293)
++||||+|+||++|+|+||||++||++||++++++++++||||++|+++++++|||||+|+|+|+||+||+|||+ +|||
T Consensus 219 v~kVlP~L~gkl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~~-si~D 297 (342)
T PTZ00353 219 VCKLLPHLVGRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNGK-LCYD 297 (342)
T ss_pred hhhhccccCCcEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCCC-eEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995 9999
Q ss_pred CCCceee-CCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 254 SSLTLVM-GDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 254 ~~~t~~~-~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
+.+|+++ +++++|+++||||||||||||+|+++||.+.
T Consensus 298 ~~~t~~~~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~ 336 (342)
T PTZ00353 298 ATSSSSSREGEVHKMVLWFDVECYYAARLLSLVKQLHQI 336 (342)
T ss_pred cccCeEEeCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence 9999995 8899999999999999999999999999764
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=8e-87 Score=651.09 Aligned_cols=268 Identities=41% Similarity=0.617 Sum_probs=257.1
Q ss_pred CceeEECCEEEEEEEeecccccccCCC--CCc--EEEeccCCCCCHhhHHHHHH-cCCCcEEecCCCCCCCCeEEecCCc
Q 022704 21 SLKPMLNQLVLMASLLMARSSRLFLTA--TPS--ISPGGTGVFVDREGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNA 95 (293)
Q Consensus 21 g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~D--ivlestG~~~s~~~a~~hl~-aGakkVVIs~ps~~dvPlvVpgVN~ 95 (293)
+..|..+|+.+.+ +++.+++..+|. |+| +|+||||.|.+++.+.+|++ +||||||||+|+++++|+||||||+
T Consensus 197 ~~~liing~~I~v--~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~ 274 (477)
T PRK08289 197 NNAIIANGNYIQV--IYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNH 274 (477)
T ss_pred CCEEEECCEEEEE--EecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCH
Confidence 5779999998766 677778888886 899 99999999999999999999 8999999999998778999999999
Q ss_pred CCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHH
Q 022704 96 DAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 175 (293)
Q Consensus 96 ~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~ 175 (293)
+.|+++++||||||||||||+|++|+|||+|||++++||||||||++|+++|++|+++||+|++++||||++||++++++
T Consensus 275 ~~~~~~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~hkd~RrgRaaa~NIIptsTGAAkAv~ 354 (477)
T PRK08289 275 SDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVA 354 (477)
T ss_pred HHhCCCCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhhhcCcccceeeeeeEecCCChhhhhh
Confidence 99987788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcc-cccccCcccccCC-CceeccCCCCCceeeEe
Q 022704 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA-DNELKGILSVCDE-PLVSVDFRCSDVSSTVD 253 (293)
Q Consensus 176 kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~-~~~lkgil~~te~-~~VS~D~~~~~~s~i~d 253 (293)
|+||+|+||++|+|+||||++||++||++++++++++||||++|++++ +++|+|||+|+++ |+||+||+|++||+|||
T Consensus 355 kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI~D 434 (477)
T PRK08289 355 KALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVD 434 (477)
T ss_pred hcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCchhhee
Confidence 999999999999999999999999999999999999999999999999 4999999999999 79999999999999999
Q ss_pred CCCceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 254 SSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 254 ~~~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
+.+|++. ++++|+++||||||||||||+|+++||.+.
T Consensus 435 ~~~T~v~-g~~vkv~~WYDNE~GYS~rvvdl~~~~~~~ 471 (477)
T PRK08289 435 SQATIVN-GNRAVLYVWYDNEFGYSCQVVRVMEQMAGV 471 (477)
T ss_pred hhccEEc-CCEEEEEEEecCchhHHHHHHHHHHHHHhc
Confidence 9999998 689999999999999999999999999764
No 16
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-83 Score=605.12 Aligned_cols=271 Identities=56% Similarity=0.846 Sum_probs=257.6
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHc-CCCcEEecCCCCCCCCeEEecCCcC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQA-GAKKVLITAPGKGDIPTYVVGVNAD 96 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~a-GakkVVIs~ps~~dvPlvVpgVN~~ 96 (293)
.+..+.|+|+.+.| ..+.+++..+|+ ++|+|+||||.|+++|.+++|+++ |||||+||+|+++++++||+|||++
T Consensus 61 ~~~~~~v~g~~I~v--~~~~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~ 138 (335)
T COG0057 61 KDDALVVNGKGIKV--LAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHN 138 (335)
T ss_pred cCCeEEECCceEEE--EecCChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEecccc
Confidence 57789999999877 455555555665 589999999999999999999998 5999999999976799999999999
Q ss_pred CCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 97 AYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 97 ~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
.|++.+.||||+|||||||+|++|+|+|+|||+++.|||+|++|++|+++|+||++|||+|+|++||||++||++|++++
T Consensus 139 ~~~~~~~iVsnaSCTTNcLap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTgaAkav~~ 218 (335)
T COG0057 139 YYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGL 218 (335)
T ss_pred ccCCCCcEEEEccchhhhhHHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcccchhhhccccCCCCcCCCcchhhhhh
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+|||+++++||||+++|+.||+++++|++++||||++|++|+++.|||+++|+|+|+||+||+|++||+|||+.+
T Consensus 219 VlP~L~gKl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~ 298 (335)
T COG0057 219 VLPELKGKLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASA 298 (335)
T ss_pred hCcccCCceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhccC
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 292 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~~ 292 (293)
|++++++++|+++||||||||++|++|+.++++...
T Consensus 299 t~~~~~~~vk~~~wydNE~gys~r~vD~~~~~~~~~ 334 (335)
T COG0057 299 TIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKAL 334 (335)
T ss_pred eEeccCcEEEEEEEEeccccchHHHHHHHHHHhhhc
Confidence 999998999999999999999999999988887654
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-67 Score=483.71 Aligned_cols=237 Identities=46% Similarity=0.740 Sum_probs=218.8
Q ss_pred CCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
+++++..+|+.+++ ++++++....| .++|+|+|+||.|++.+.+..|+++||||||||+|+. |.||+|+|||+++
T Consensus 46 ~~~~~i~~G~~i~~--~~~~~p~~i~w~~~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~-dapmfv~gVn~~~ 122 (285)
T KOG0657|consen 46 ENFKLIINGNPITI--FQFRDPAKIPWGAKGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA-DAPMFVMGVNGEK 122 (285)
T ss_pred cCCceeecCceEEe--ecccCcccCccccccceeEeeccccccccccccccccccceEEEeccccC-CCCcccccccccc
Confidence 44555566888766 56665544333 4899999999999999999999999999999999995 6999999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch-hhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~-~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|+++..||||++||||||+|+.|+|||+|||.+++|||+|+++++|+++|+|+ ++||.+|.+.|||||.+||++|+++|
T Consensus 123 y~~~~~iiSnascttnclaPlaKVi~d~fgI~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgK 202 (285)
T KOG0657|consen 123 YDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGK 202 (285)
T ss_pred cccccceeechhhhhccccchhheeccccccccccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHH
Confidence 99877799999999999999999999999999999999999999999999976 68999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+||++||++|||++ ++.+|++++++++.++|+|+++++++++++||||| ||+
T Consensus 203 vipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk~~~~~~lkGIL--te~-------------------- 259 (285)
T KOG0657|consen 203 VIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVKLASEIPLKGIL--TEH-------------------- 259 (285)
T ss_pred HhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHHHHhhcccccccc--ccc--------------------
Confidence 9999999999999999999 99999999999999999999999999999999999 877
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
+| ++|||||||||+|++||+.||+++
T Consensus 260 ------~f---ISWYDNE~GYS~rVvDl~~h~ask 285 (285)
T KOG0657|consen 260 ------HF---ISWYDNEFGYSNRVVDLMEHMASK 285 (285)
T ss_pred ------ce---eeeeccccccchHHHHHHHHHhcC
Confidence 34 899999999999999999999863
No 18
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=8.6e-51 Score=350.48 Aligned_cols=157 Identities=56% Similarity=0.868 Sum_probs=152.9
Q ss_pred hhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHHHccccCCCeeEEEEecCC
Q 022704 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPT 194 (293)
Q Consensus 115 lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kvlPeL~gkv~~tavRVPV 194 (293)
|+|++|+|+++|||+++.|||+|+++++|+++|++++|+|+||++++||||+.||++++++++||+|+||++++++||||
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVPt 80 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPHKDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVPT 80 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS--SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEESS
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCccceeeeccccccccccccccccccccccchhhhhhhhhccCcceeeEEeeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCCceeeCCceEEEEEEe
Q 022704 195 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWY 271 (293)
Q Consensus 195 ~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vkl~~Wy 271 (293)
+++|+.|++++++|++++|||+++|+++++++++||++|+|+|+||+||+|++||+|||+.++++++++++|+++||
T Consensus 81 ~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 81 PNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp SSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred cccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
No 19
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-47 Score=361.79 Aligned_cols=197 Identities=13% Similarity=0.075 Sum_probs=175.2
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecC
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGV 93 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgV 93 (293)
=|+||++.|+|++++|+.+ +.++|+++|+||| +|...++++++.+.++|| +||||+| ++|+|||||||
T Consensus 40 ~s~gk~i~f~g~~~~V~~l-----~~~~f~~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEV 111 (322)
T PRK06901 40 FGEEQGIRFNNKAVEQIAP-----EEVEWADFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSV 111 (322)
T ss_pred ccCCCEEEECCEEEEEEEC-----CccCcccCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccC
Confidence 6889999999999999443 3456789999999 999999999999999999 9999998 67999999999
Q ss_pred CcCCCCC--CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccchhhH----------Hhhhhcc
Q 022704 94 NADAYKP--DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASHRDL----------RRARAAA 160 (293)
Q Consensus 94 N~~~~~~--~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~~d~----------r~~r~~a 160 (293)
|++.++. +++||+||||||++|+++|+|||+.|||+|+.+|||||+||+ +++++++.... ...+++|
T Consensus 112 N~e~l~~~~~~~IIanPNCsTi~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~~~iA 191 (322)
T PRK06901 112 NDEQLAELRQRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLA 191 (322)
T ss_pred CHHHHhcCcCCCEEECCcHHHHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCCCceeee
Confidence 9999875 368999999999999999999999999999999999999999 55666542110 1238999
Q ss_pred cccccCC-CchHHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcc
Q 022704 161 LNIVPTS-TGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 223 (293)
Q Consensus 161 ~NIIP~~-tGa~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~ 223 (293)
||+||++ +|...|.+||||+| .++++||+||||++||+++++++|+++++.|+++++|++++
T Consensus 192 FNviP~ig~~m~~EtrKIl~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~ 254 (322)
T PRK06901 192 FDVFPANAQNLELQLQKIFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNN 254 (322)
T ss_pred ccccccCCccHHHHHHHHhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCC
Confidence 9999999 57788999999766 37999999999999999999999999999999999999876
No 20
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-44 Score=337.62 Aligned_cols=261 Identities=21% Similarity=0.200 Sum_probs=197.0
Q ss_pred CCCCCCce-eEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEE
Q 022704 16 TPPSASLK-PMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYV 90 (293)
Q Consensus 16 ~~~s~g~~-~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvV 90 (293)
++.|+|++ ++|+|+.+.+. +...+.++|+++||||+|.|...++++++++.++|| +||||+| ++|+|+||
T Consensus 36 S~rSaG~~~~~f~~~~~~v~---~~~~~~~~~~~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVV 110 (334)
T COG0136 36 SARSAGKKYIEFGGKSIGVP---EDAADEFVFSDVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVV 110 (334)
T ss_pred cccccCCccccccCccccCc---cccccccccccCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEec
Confidence 46899999 99999997772 211466788999999999999999999999999999 9999998 67999999
Q ss_pred ecCCcCCCCC--CCC-eeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchh-hhccchhhHH----------hh
Q 022704 91 VGVNADAYKP--DEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR-LLDASHRDLR----------RA 156 (293)
Q Consensus 91 pgVN~~~~~~--~~~-IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~-~~d~~~~d~r----------~~ 156 (293)
||||++.+.. .++ ||+||||||.+|+++||||+++|||+++.+|||||+||+.. .++.+....+ .+
T Consensus 111 PeVN~~~l~~~~~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~ 190 (334)
T COG0136 111 PEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIG 190 (334)
T ss_pred CCcCHHHHHhhhhCCCEEECCChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCccccccc
Confidence 9999998754 246 99999999999999999999999999999999999999944 5554321111 16
Q ss_pred hhcccccccCCC-----chHHHHH-------HHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHH-HHcc
Q 022704 157 RAAALNIVPTST-----GAAKAVA-------LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAF-RESA 223 (293)
Q Consensus 157 r~~a~NIIP~~t-----Ga~k~~~-------kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l-~~a~ 223 (293)
+++|||+||++. |++||++ |||++-..++++||+||||++||++.++++|+++++.+|+++.+ .+++
T Consensus 191 ~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap 270 (334)
T COG0136 191 YPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAP 270 (334)
T ss_pred ccccccccccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccCC
Confidence 899999999994 5777664 67776667999999999999999999999999999999999654 4443
Q ss_pred cccccCccccc-CCCceeccCCCCCceeeEeCCCcee-eCCceEEEEEEeCCC-CchhhhHHHHHH
Q 022704 224 DNELKGILSVC-DEPLVSVDFRCSDVSSTVDSSLTLV-MGDDMVKVIAWYDNE-WGYSQRVVDLAD 286 (293)
Q Consensus 224 ~~~lkgil~~t-e~~~VS~D~~~~~~s~i~d~~~t~~-~~~~~vkl~~WyDNE-~gys~r~~dl~~ 286 (293)
..-+..-. +.|..-.|-.|.. .++-++.-.- ..++.+++..==||= ||=|--.+.+++
T Consensus 271 ---~v~v~~~~~~~P~~~~d~~g~~--~v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA~~av~iaE 331 (334)
T COG0136 271 ---GVVVVDNPEDRPQTPLDATGGD--EVSVGRIRKDLSGPEGLKLWVVGDNLRKGAALNAVLIAE 331 (334)
T ss_pred ---CcEEEeCCccCccChhhhcCCC--ceEEeEeeecCCCCCcEEEEEEechhhhhhHHHHHHHHH
Confidence 22222222 2455555666655 2332222111 123345555556773 565544444444
No 21
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=1e-43 Score=341.60 Aligned_cols=201 Identities=14% Similarity=0.072 Sum_probs=170.1
Q ss_pred CCCCceeEECCEEEEEEEeeccccccc-CCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEec
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLF-LTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVG 92 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f-~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpg 92 (293)
=|+|+.+.|+|++++|+.+ +.+ +|.++|+||||+|...++++++++.++|+..+||||+| ++|+||||||
T Consensus 38 ~s~g~~~~f~~~~~~v~~~-----~~~~~~~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPe 112 (366)
T TIGR01745 38 QLGQAAPSFGGTTGTLQDA-----FDIDALKALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDP 112 (366)
T ss_pred hhCCCcCCCCCCcceEEcC-----cccccccCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCC
Confidence 5899999999999888432 233 47899999999999999999999999992229999998 6799999999
Q ss_pred CCcCCCCCC--CCe--eeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccchh----------------
Q 022704 93 VNADAYKPD--EPI--ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASHR---------------- 151 (293)
Q Consensus 93 VN~~~~~~~--~~I--ISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~~---------------- 151 (293)
||++.++.+ ++| |+||||||++|+++|+|||+.|||+++.+|||||+||+ +++++++..
T Consensus 113 VN~~~i~~~~~~gi~~ianPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~ 192 (366)
T TIGR01745 113 VNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATP 192 (366)
T ss_pred cCHHHHHhHHhCCcCeEECcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhcccccccccc
Confidence 999987653 678 89999999999999999999999999999999999999 445544221
Q ss_pred ---------------------hHHhhhhcccccccCC-----CchHHHH-------HHHccc-cCCCeeEEEEecCCCee
Q 022704 152 ---------------------DLRRARAAALNIVPTS-----TGAAKAV-------ALVLPA-LKGKLNGIALRVPTPNV 197 (293)
Q Consensus 152 ---------------------d~r~~r~~a~NIIP~~-----tGa~k~~-------~kvlPe-L~gkv~~tavRVPV~~g 197 (293)
.-.+++++|||+||++ +|+++|+ +|||.. -..++++||+||||++|
T Consensus 193 ~~~il~~~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~g 272 (366)
T TIGR01745 193 SSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRC 272 (366)
T ss_pred chhhhhhccccccccccCCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceecc
Confidence 1134688999999998 5777755 467732 23489999999999999
Q ss_pred eEEEEEEEecCcCcHHHHHHHHHHcc
Q 022704 198 SVVDLVVQVSKKTFAEEVNAAFRESA 223 (293)
Q Consensus 198 s~~dltv~~~k~v~~eei~~~l~~a~ 223 (293)
|++.++++|+++++.++++++|+++.
T Consensus 273 Hs~sv~ve~~~~vs~e~i~~~L~~~~ 298 (366)
T TIGR01745 273 HSQAFTIKLKKDVSLETIEEIIRAHN 298 (366)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999854
No 22
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=9.9e-40 Score=312.77 Aligned_cols=257 Identities=17% Similarity=0.212 Sum_probs=194.9
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecC
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGV 93 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgV 93 (293)
-|+||++.|+|+++.|..+ +. ++|.++|+||+|+|...++++++++.++|| +|||+++ ++++|++||||
T Consensus 43 ~saGk~~~~~~~~l~v~~~---~~--~~~~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEv 115 (347)
T PRK06728 43 RSAGKTVQFKGREIIIQEA---KI--NSFEGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEV 115 (347)
T ss_pred ccCCCCeeeCCcceEEEeC---CH--HHhcCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCc
Confidence 5899999999999877432 33 335789999999999999999999999999 9999988 57899999999
Q ss_pred CcCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccchhh------------HHhh----
Q 022704 94 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASHRD------------LRRA---- 156 (293)
Q Consensus 94 N~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~~d------------~r~~---- 156 (293)
|.+.++..++||+||||+|++++.+|+||+++++|++++++|||++||+ .++++++.+. -.++
T Consensus 116 N~e~i~~~~~iIanPnC~tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~ 195 (347)
T PRK06728 116 NAHTLKEHKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKD 195 (347)
T ss_pred CHHHHhccCCEEECCCCHHHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCcccccccccc
Confidence 9999876557999999999999999999999999999999999999999 5566653221 1344
Q ss_pred ---hhcccccccCC-----CchHHHH-------HHHc--cccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHH
Q 022704 157 ---RAAALNIVPTS-----TGAAKAV-------ALVL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAF 219 (293)
Q Consensus 157 ---r~~a~NIIP~~-----tGa~k~~-------~kvl--PeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l 219 (293)
++++||+||++ +|+++|+ +||| |+| +|++||+||||++||++.|+++|+++++.|+++++|
T Consensus 196 ~~~~~iafNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l 273 (347)
T PRK06728 196 KKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVYIELEKEATVAEIKEVL 273 (347)
T ss_pred ccCCceeccccCcCCccccCCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHH
Confidence 89999999998 5766655 5677 444 899999999999999999999999999999999999
Q ss_pred HHcccccccCcccccCCCc-----eeccCCCCCceeeEeCCCceee-CCceEEEEEEeCCC-CchhhhHHHHHHHHhcc
Q 022704 220 RESADNELKGILSVCDEPL-----VSVDFRCSDVSSTVDSSLTLVM-GDDMVKVIAWYDNE-WGYSQRVVDLADIVANN 291 (293)
Q Consensus 220 ~~a~~~~lkgil~~te~~~-----VS~D~~~~~~s~i~d~~~t~~~-~~~~vkl~~WyDNE-~gys~r~~dl~~~~~~~ 291 (293)
++++ ||.-+ ++|- --.|..|.. .++-++.-.-. +.+-+++..-=||= ||=|--.+-+++++.++
T Consensus 274 ~~~~-----gi~~~-d~p~~~~~ptP~~~~g~~--~v~VGRiR~d~~~~~~l~~w~~~DNlr~GAA~nav~iaE~l~~~ 344 (347)
T PRK06728 274 FDAP-----GVILQ-DNPSEQLYPMPLYAEGKI--DTFVGRIRKDPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVEE 344 (347)
T ss_pred HcCC-----CCEEe-CCCcccCCcCccccCCCC--eEEEeCccccCCCCCeEEEEEEechHHHHHHHHHHHHHHHHHHc
Confidence 8764 33322 3220 001222222 13322222111 12345555556874 56665566677766553
No 23
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=6.7e-40 Score=313.34 Aligned_cols=200 Identities=22% Similarity=0.248 Sum_probs=174.3
Q ss_pred CCCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEec
Q 022704 17 PPSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVG 92 (293)
Q Consensus 17 ~~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpg 92 (293)
..|+|+++.|+|+++.+..+ +.++|.++|+||+|+|.+.+++++++|+++|| +|||+++ ++++|++|||
T Consensus 35 ~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpe 107 (339)
T TIGR01296 35 DRSAGRKVTFKGKELEVNEA-----KIESFEGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPE 107 (339)
T ss_pred cccCCCeeeeCCeeEEEEeC-----ChHHhcCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCC
Confidence 37899999999988766322 23446899999999999999999999999999 8998887 3478999999
Q ss_pred CCcCCCCC--CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc------------hhhhccchhh------
Q 022704 93 VNADAYKP--DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD------------QRLLDASHRD------ 152 (293)
Q Consensus 93 VN~~~~~~--~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~------------q~~~d~~~~d------ 152 (293)
||++.++. .++|||||||+|+|++++|+||+++|+|++++|||||++||+ |++++.++.+
T Consensus 108 vN~~~i~~~~~~~iianp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~ 187 (339)
T TIGR01296 108 VNLEDLKEFNTKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAP 187 (339)
T ss_pred cCHHHHhhCccCCEEECCCcHHHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCcccccc
Confidence 99999875 356999999999999999999999999999999999999998 3334443333
Q ss_pred --HHhhhhcccccccCC-----CchHHHHHHHccccC-------CCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHH
Q 022704 153 --LRRARAAALNIVPTS-----TGAAKAVALVLPALK-------GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAA 218 (293)
Q Consensus 153 --~r~~r~~a~NIIP~~-----tGa~k~~~kvlPeL~-------gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~ 218 (293)
.+++|+++|||||++ +|+++|+.|+.++|+ .+|+++|+||||++||+.+++++++++++.||++++
T Consensus 188 ~~~~~~~~~~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~ 267 (339)
T TIGR01296 188 KAKKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVREL 267 (339)
T ss_pred ccccCCCcccccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHH
Confidence 688999999999996 699999999988875 479999999999999999999999999999999999
Q ss_pred HHHcc
Q 022704 219 FRESA 223 (293)
Q Consensus 219 l~~a~ 223 (293)
|++++
T Consensus 268 l~~~~ 272 (339)
T TIGR01296 268 LKNAP 272 (339)
T ss_pred HhcCC
Confidence 99653
No 24
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=2e-39 Score=309.03 Aligned_cols=185 Identities=17% Similarity=0.211 Sum_probs=162.9
Q ss_pred ceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCC-CCeEEecCCcCCCCC
Q 022704 22 LKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKP 100 (293)
Q Consensus 22 ~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~d-vPlvVpgVN~~~~~~ 100 (293)
....|.+..+.+. .+.+.. +.++|+|++|||.+..++.++.|+++|+|+|++++|+++. .++||+|+|++.|.+
T Consensus 54 ~~~~~~~~~l~v~----g~~eeL-l~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~ 128 (333)
T TIGR01546 54 FIPRFEEAGIEVA----GTLEDL-LEKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALG 128 (333)
T ss_pred cceEeccCceEec----CCHHHH-hhcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCc
Confidence 3455665555441 223333 3689999999999999999999999999999999998542 579999999999986
Q ss_pred CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccC-CC---chHHHHHH
Q 022704 101 DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT-ST---GAAKAVAL 176 (293)
Q Consensus 101 ~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~-~t---Ga~k~~~k 176 (293)
.+ ||||+|||||||+|++|+|+++|||+++.|||+|+ +++|+ |+|||| ++||||+ +| +.++++++
T Consensus 129 ~~-~vs~aSCtTn~Lap~~~~L~~~fGI~~~~~Ttvh~-t~dq~-------d~rrgr--~~~IiP~~~t~ps~~a~av~~ 197 (333)
T TIGR01546 129 KD-YVRVVSCNTTGLVRTLNAINDYSKVDKVRAVMVRR-AADPN-------DVKKGP--INAIVPDPVTVPSHHGPDVQT 197 (333)
T ss_pred Cc-eEEecCchHhhHHHHHHHHHHhcCeEEEEEEEEee-cCChh-------hhccCc--hhceEeCCCCCCCchHHHHHH
Confidence 44 99999999999999999999999999999999997 99985 889999 6999999 55 77999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHccc
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 224 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~ 224 (293)
|||+|+ ++++++||||+++|+.|+++++++++++|||+++|++++.
T Consensus 198 VlP~L~--i~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 198 VIPNLN--IETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred cCCCCC--ccEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 999996 9999999999999999999999999999999999999874
No 25
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-38 Score=303.85 Aligned_cols=197 Identities=24% Similarity=0.307 Sum_probs=172.1
Q ss_pred CCCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEec
Q 022704 17 PPSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVG 92 (293)
Q Consensus 17 ~~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpg 92 (293)
..++|+.+.++|.++.+. +.+.++|.++|+||+|+|.+.+++++++|+++|| +|||.++ ++++|+++||
T Consensus 37 ~~~~g~~l~~~g~~i~v~-----d~~~~~~~~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpe 109 (334)
T PRK14874 37 ARSAGKELSFKGKELKVE-----DLTTFDFSGVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPE 109 (334)
T ss_pred cccCCCeeeeCCceeEEe-----eCCHHHHcCCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCC
Confidence 368999999999887662 2233456899999999999999999999999999 8998877 3478999999
Q ss_pred CCcCCCCCC--CCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc------------hhhhccc---hhhHHh
Q 022704 93 VNADAYKPD--EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD------------QRLLDAS---HRDLRR 155 (293)
Q Consensus 93 VN~~~~~~~--~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~------------q~~~d~~---~~d~r~ 155 (293)
||++.++.. ++|||||+|+|+|++++|+||+++|+|++++|||+|++||+ |..+|++ ++++|+
T Consensus 110 vn~~~i~~~~~~~iVanp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~ 189 (334)
T PRK14874 110 VNPEALAEHRKKGIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKF 189 (334)
T ss_pred cCHHHHhhhhcCCeEECccHHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCcccc
Confidence 999998764 47999999999999999999999999999999999999984 4556543 367789
Q ss_pred hhhcccccccCC-----CchHHH-------HHHHc--cccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHH
Q 022704 156 ARAAALNIVPTS-----TGAAKA-------VALVL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 221 (293)
Q Consensus 156 ~r~~a~NIIP~~-----tGa~k~-------~~kvl--PeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~ 221 (293)
+|++++|++|+. +|+++| +.|++ |++ +++++|+||||++||+.+++++++++++.+|++++|++
T Consensus 190 ~~~~a~niip~~~~~~~~gh~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~ 267 (334)
T PRK14874 190 PKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAE 267 (334)
T ss_pred CccccCcccCcCCccccCCCcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHc
Confidence 999999999997 788776 46676 777 79999999999999999999999999999999999998
Q ss_pred c
Q 022704 222 S 222 (293)
Q Consensus 222 a 222 (293)
+
T Consensus 268 ~ 268 (334)
T PRK14874 268 A 268 (334)
T ss_pred C
Confidence 4
No 26
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-38 Score=306.04 Aligned_cols=202 Identities=15% Similarity=0.070 Sum_probs=166.5
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecC
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGV 93 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgV 93 (293)
=|+|+.+.|+|+.+.+..+. +.++|.++|+||+|+|...++++++++.++|++.+|||+++ ++|+|++||||
T Consensus 39 ~sg~~~~~f~g~~~~v~~~~----~~~~~~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEv 114 (369)
T PRK06598 39 QAGGAAPSFGGKEGTLQDAF----DIDALKKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPV 114 (369)
T ss_pred hhCCcccccCCCcceEEecC----ChhHhcCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCc
Confidence 46677779999987773221 12346899999999999999999999999994338999998 57999999999
Q ss_pred CcCCCCCC--C--CeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccchhh----------------
Q 022704 94 NADAYKPD--E--PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASHRD---------------- 152 (293)
Q Consensus 94 N~~~~~~~--~--~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~~d---------------- 152 (293)
|++.+... + ++|+||||+|++++++|+||++.++|+++.++|||++||+ .++++++...
T Consensus 115 N~e~i~~~~~~g~~iIanPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~ 194 (369)
T PRK06598 115 NRDVIDDALANGVKTFVGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPA 194 (369)
T ss_pred CHHHHHhhhhcCCCEEEcCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccc
Confidence 99987642 3 4899999999999999999999999999999999999999 4455443211
Q ss_pred ---------------------HHhhhhcccccccCC-----CchHHHH-------HHHccc--cCCCeeEEEEecCCCee
Q 022704 153 ---------------------LRRARAAALNIVPTS-----TGAAKAV-------ALVLPA--LKGKLNGIALRVPTPNV 197 (293)
Q Consensus 153 ---------------------~r~~r~~a~NIIP~~-----tGa~k~~-------~kvlPe--L~gkv~~tavRVPV~~g 197 (293)
-.++++++||+||++ +|+++|+ +|||.. -..++++||+||||++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~g 274 (369)
T PRK06598 195 SAILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRC 274 (369)
T ss_pred hhhhhhhhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceecc
Confidence 123578999999998 5887765 467732 23389999999999999
Q ss_pred eEEEEEEEecCcCcHHHHHHHHHHcc
Q 022704 198 SVVDLVVQVSKKTFAEEVNAAFRESA 223 (293)
Q Consensus 198 s~~dltv~~~k~v~~eei~~~l~~a~ 223 (293)
|++.++++|+++++.+|++++|+++.
T Consensus 275 Hs~sv~ve~~~~~~~~~i~~~L~~~~ 300 (369)
T PRK06598 275 HSQALTIKLKKDVPLAEIEEILAAHN 300 (369)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999854
No 27
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-37 Score=294.84 Aligned_cols=203 Identities=20% Similarity=0.221 Sum_probs=163.1
Q ss_pred ECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCC--eEEecCCcCCCCCCCC
Q 022704 26 LNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP--TYVVGVNADAYKPDEP 103 (293)
Q Consensus 26 f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvP--lvVpgVN~~~~~~~~~ 103 (293)
|++..+.|. .+.+.. +.++|+||||||.+.+.+.++.|+++| ++||++++.++++| .+|||||++.+... +
T Consensus 61 ~~~~~i~V~----~~~~el-~~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~ 133 (341)
T PRK04207 61 FEEAGIPVA----GTIEDL-LEKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-D 133 (341)
T ss_pred ccCCceEEc----CChhHh-hccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-C
Confidence 566666552 122222 468999999999999999999999999 66888777654443 37999999998753 4
Q ss_pred eeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCC----CchHHHHHHHcc
Q 022704 104 IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTS----TGAAKAVALVLP 179 (293)
Q Consensus 104 IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~----tGa~k~~~kvlP 179 (293)
||+|||||||||+|+||+|+++|||+++.|||||++|+. ++++ |+++.||+|.. +...++++|++|
T Consensus 134 ~v~~~sCtT~~l~~~l~~L~~~fgI~~~~vTtv~a~td~--------~~~~--r~~~~niip~p~~~~~~~g~~v~~vlp 203 (341)
T PRK04207 134 YVRVVSCNTTGLCRTLCALDRAFGVKKVRATLVRRAADP--------KEVK--RGPINAIVPDPVTVPSHHGPDVKTVLP 203 (341)
T ss_pred cEEccChHHHHHHHHHHHHHHhcCceEEEEEEEEcCCCc--------chhh--HHHhcCcCCCCCCCCCCchhHHHhhCC
Confidence 999999999999999999999999999999999998842 3443 78999999852 344689999999
Q ss_pred ccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccc----cccCcccccCCCceeccCCCCCc
Q 022704 180 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN----ELKGILSVCDEPLVSVDFRCSDV 248 (293)
Q Consensus 180 eL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~----~lkgil~~te~~~VS~D~~~~~~ 248 (293)
+| +++++|+||||++||+++++++|++++++|||+++|++++.= .-.|+.+ +.+++--.+=.|.|+
T Consensus 204 ~l--~i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~~~~~~~rp~ 273 (341)
T PRK04207 204 DL--DITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS-TAELIEYARDLGRPR 273 (341)
T ss_pred CC--ceEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhHHHHHcCCCc
Confidence 99 599999999999999999999999999999999999998642 2246666 666654444455555
No 28
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-33 Score=266.26 Aligned_cols=255 Identities=18% Similarity=0.141 Sum_probs=188.1
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecC
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGV 93 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgV 93 (293)
-|+|+++.|+|+++++. +.+.|+|+++|+||+|++...++++++.++++|| +|||+++ ++++|+++|||
T Consensus 41 ~saG~~~~~~~~~~~v~-----~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEv 113 (336)
T PRK08040 41 ESAGETLRFGGKSVTVQ-----DAAEFDWSQAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEV 113 (336)
T ss_pred CcCCceEEECCcceEEE-----eCchhhccCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEcccc
Confidence 58999999999988773 3345777899999999999999999999999999 8999987 46899999999
Q ss_pred CcCCCCC--CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccch------------hhHHhhhh
Q 022704 94 NADAYKP--DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASH------------RDLRRARA 158 (293)
Q Consensus 94 N~~~~~~--~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~------------~d~r~~r~ 158 (293)
|.+.++. ..+||+||+|+|.+++.+|+||+++++|++++|+|||++||+ ++.++++. +...+.++
T Consensus 114 n~~~l~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~ 193 (336)
T PRK08040 114 NPFVLADYRNRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQ 193 (336)
T ss_pred CHHHHhhhccCCEEECCCHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchh
Confidence 9955543 468999999999999999999999999999999999999999 33443321 11346677
Q ss_pred cccccccCCC---chHH-------HHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHccccccc
Q 022704 159 AALNIVPTST---GAAK-------AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELK 228 (293)
Q Consensus 159 ~a~NIIP~~t---Ga~k-------~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lk 228 (293)
+++|++|++. |... |++|+|..-+.+++.||+||||++||+..++++++++++.++++++|++++
T Consensus 194 i~~N~~pyi~~~~g~~~~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~p----- 268 (336)
T PRK08040 194 LAFNMLPLLPDSEGSVREERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQGE----- 268 (336)
T ss_pred hcCceeeccCCcCCcchHhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcCC-----
Confidence 9999999953 2333 445565211236999999999999999999999999999999999999843
Q ss_pred CcccccCCCcee--ccCCCCCceeeEeCCCceeeC----CceEEEEEEeCCC-CchhhhHHHHHHHHh
Q 022704 229 GILSVCDEPLVS--VDFRCSDVSSTVDSSLTLVMG----DDMVKVIAWYDNE-WGYSQRVVDLADIVA 289 (293)
Q Consensus 229 gil~~te~~~VS--~D~~~~~~s~i~d~~~t~~~~----~~~vkl~~WyDNE-~gys~r~~dl~~~~~ 289 (293)
+|.=+.+...-+ .|-.|..+..| +...+ ++.+.+.+--||= .|=|-+-+-+++++.
T Consensus 269 ~v~v~~~~~~P~~~~~v~g~n~~~V-----gr~~~~~~~~~~l~~~~~~DNL~KGAAg~AVQiae~l~ 331 (336)
T PRK08040 269 DIVLSEENDYPTQVGDASGNPHLSI-----GCVRNDYGMPEQLQFWSVADNVRFGGALMAVKTAEKLV 331 (336)
T ss_pred CEEEECCCCCCCchhHcCCCceEEE-----EEEEccCCCCCEEEEEEEehhHHHHHHHHHHHHHHHHH
Confidence 221112211111 13334333221 11111 2345566668885 366666666666654
No 29
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=2e-32 Score=261.68 Aligned_cols=257 Identities=19% Similarity=0.131 Sum_probs=188.6
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC---CCCCeEEecCC
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK---GDIPTYVVGVN 94 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~---~dvPlvVpgVN 94 (293)
-|+||++.|+|+.+.+..+ +.++|+++|+||+|++...+.++++.++++|+ +|||++++ +++|++|||||
T Consensus 41 ~~aG~~l~~~~~~l~~~~~-----~~~~~~~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn 113 (336)
T PRK05671 41 ESAGHSVPFAGKNLRVREV-----DSFDFSQVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVN 113 (336)
T ss_pred ccCCCeeccCCcceEEeeC-----ChHHhcCCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccC
Confidence 4789999999988777322 23446899999999999999999999999999 79998873 58999999999
Q ss_pred cCCCCC--CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccch------------hhHHhhhhc
Q 022704 95 ADAYKP--DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASH------------RDLRRARAA 159 (293)
Q Consensus 95 ~~~~~~--~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~------------~d~r~~r~~ 159 (293)
.+.++. ..+||+||+|+|.+++.+|+||++.|++++++++|||++||+ .+.++... +.-.+.+++
T Consensus 114 ~~~i~~~~~~~iIAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~i 193 (336)
T PRK05671 114 AERLASLAAPFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQV 193 (336)
T ss_pred HHHHccccCCCEEECCCcHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCcccccccccc
Confidence 998875 268999999999999999999999999999999999999999 33333311 112467899
Q ss_pred ccccccCCC-----chHHHHH-------HHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccc
Q 022704 160 ALNIVPTST-----GAAKAVA-------LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNEL 227 (293)
Q Consensus 160 a~NIIP~~t-----Ga~k~~~-------kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~l 227 (293)
+||++|++. |+++++. |+|...+.+++.||+||||++||+..++++++++++.+|++++|++++
T Consensus 194 afn~~P~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~---- 269 (336)
T PRK05671 194 AFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAP---- 269 (336)
T ss_pred ccccccccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCC----
Confidence 999999984 7766555 455222346999999999999999999999999999999999999543
Q ss_pred cCcccccCC--CceeccCCCCCceeeEeCCCcee--eCCceEEEEEEeCCCC-chhhhHHHHHHHHh
Q 022704 228 KGILSVCDE--PLVSVDFRCSDVSSTVDSSLTLV--MGDDMVKVIAWYDNEW-GYSQRVVDLADIVA 289 (293)
Q Consensus 228 kgil~~te~--~~VS~D~~~~~~s~i~d~~~t~~--~~~~~vkl~~WyDNE~-gys~r~~dl~~~~~ 289 (293)
+|-=+.++ |-.-.|..|..+..| +.... ..++.+.+.+=-||=. |=|-+.+-.++.+.
T Consensus 270 -~v~v~~~~~~p~~~~~v~g~~~~~v---g~~~~~~~~~~~l~~~~~~DNL~kGAA~~AVq~~~~l~ 332 (336)
T PRK05671 270 -GIELVEAGDYPTPVGDAVGQDVVYV---GRVRAGVDDPCQLNLWLTSDNVRKGAALNAVQVAELLI 332 (336)
T ss_pred -CeEEeCCCCCCCChHHcCCCCeEEE---EEEEecCCCCCEEEEEEEehhHHHHHHHHHHHHHHHHH
Confidence 22111111 211124455544222 11111 1223444555578853 56666666666554
No 30
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.98 E-value=3.1e-32 Score=261.12 Aligned_cols=198 Identities=16% Similarity=0.148 Sum_probs=165.7
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecC
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGV 93 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgV 93 (293)
-|+|+++.|+|+++.+..+ +. .+|.++|+||+|+|...++++++++.++|| +|||+++ ++++|+++||+
T Consensus 44 rsaGk~~~~~~~~~~v~~~---~~--~~~~~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEv 116 (344)
T PLN02383 44 RSAGKKVTFEGRDYTVEEL---TE--DSFDGVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEV 116 (344)
T ss_pred CCCCCeeeecCceeEEEeC---CH--HHHcCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCc
Confidence 5789999999988766322 22 235789999999999999999999999999 8999987 56899999999
Q ss_pred CcCCCCCC------CCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccch------------hhHH
Q 022704 94 NADAYKPD------EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASH------------RDLR 154 (293)
Q Consensus 94 N~~~~~~~------~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~------------~d~r 154 (293)
|.+.++.. ++||+||+|+|.+++.+|+||+++++|++++++|||++||+ .+++++.+ ..-+
T Consensus 117 n~~~i~~~~~~~~~~~iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~ 196 (344)
T PLN02383 117 NPEAMKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNI 196 (344)
T ss_pred CHHHHHhhhhcccCCcEEECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhc
Confidence 99987652 34999999999999999999999999999999999999999 44555543 2235
Q ss_pred hhhhcccccccCC-----CchHHHH-------HHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHc
Q 022704 155 RARAAALNIVPTS-----TGAAKAV-------ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 222 (293)
Q Consensus 155 ~~r~~a~NIIP~~-----tGa~k~~-------~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a 222 (293)
++.+.+||++|+. +|+++++ +|++-.-+.+++.||+||||++||+..++++++++++.++++++|+++
T Consensus 197 ~~~~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~ 276 (344)
T PLN02383 197 FAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASA 276 (344)
T ss_pred cCCccccccccccCccccCCCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 6789999999998 4555444 355522233799999999999999999999999999999999999974
No 31
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.96 E-value=6.2e-29 Score=237.56 Aligned_cols=187 Identities=24% Similarity=0.238 Sum_probs=155.4
Q ss_pred CCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecCCcCCCCC---------CCCeeeCCCcch
Q 022704 46 TATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP---------DEPIISNASCTT 112 (293)
Q Consensus 46 ~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgVN~~~~~~---------~~~IISn~sCtT 112 (293)
+.++|+||+|++...+.++++...++|+ .||++++ ++++|+++|++|++.|.. ..+||+||+|+|
T Consensus 71 ~~~~DvVf~a~p~~~s~~~~~~~~~~G~--~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~ 148 (341)
T TIGR00978 71 SKDVDIVFSALPSEVAEEVEPKLAEAGK--PVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTT 148 (341)
T ss_pred hccCCEEEEeCCHHHHHHHHHHHHHCCC--EEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHH
Confidence 5789999999999999999999999999 5676665 467899999999886642 125999999999
Q ss_pred hhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCch-H---HHHHHHccccCC-----
Q 022704 113 NCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA-A---KAVALVLPALKG----- 183 (293)
Q Consensus 113 n~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa-~---k~~~kvlPeL~g----- 183 (293)
+|++++|+||+++++|+++.|+|+|++||+++.... .+.+++|++|+..+. . .|+.++|+.+.+
T Consensus 149 t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~~-------~~~~~~Ni~py~~~~ehrh~~Ei~~il~~~~~~~~~~ 221 (341)
T TIGR00978 149 AGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGVP-------SMDILDNIIPHIGGEEEKIERETRKILGKLENGKIEP 221 (341)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCCc-------cchhhCCeEecCcHHHHHHHHHHHHHhCccccCcccC
Confidence 999999999999999999999999999999764211 245899999999776 2 367889987633
Q ss_pred ---CeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceec
Q 022704 184 ---KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 241 (293)
Q Consensus 184 ---kv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~ 241 (293)
+++.+|+|||+++||+.+++++++++++.++++++|+++.+.++...+.-+.+|.|-.
T Consensus 222 ~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~ 282 (341)
T TIGR00978 222 APFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIV 282 (341)
T ss_pred CCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence 5999999999999999999999999999999999999987665443444455555533
No 32
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.95 E-value=6.5e-27 Score=224.31 Aligned_cols=193 Identities=19% Similarity=0.184 Sum_probs=153.1
Q ss_pred CCCCCceeE----EC------C--EEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC--
Q 022704 17 PPSASLKPM----LN------Q--LVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG-- 82 (293)
Q Consensus 17 ~~s~g~~~~----f~------g--~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps-- 82 (293)
+.++|+.+. |. + +++.+. ..+.+. |.++|+||+|++...+.+.++...++|+ .+|+.++
T Consensus 38 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~--~~~~DvVf~a~p~~~s~~~~~~~~~~G~--~vIDls~~f 110 (349)
T PRK08664 38 ERSAGKTYGEAVRWQLDGPIPEEVADMEVV---STDPEA--VDDVDIVFSALPSDVAGEVEEEFAKAGK--PVFSNASAH 110 (349)
T ss_pred hhhcCCcccccccccccccccccccceEEE---eCCHHH--hcCCCEEEEeCChhHHHHHHHHHHHCCC--EEEECCchh
Confidence 467887774 32 2 344442 223333 4689999999999999999988889999 5666655
Q ss_pred --CCCCCeEEecCCcCCCCC----------CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch
Q 022704 83 --KGDIPTYVVGVNADAYKP----------DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH 150 (293)
Q Consensus 83 --~~dvPlvVpgVN~~~~~~----------~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~ 150 (293)
++++|+++|++|++.|.. +.+|||||+|+|+|++++|+||++ |||+++.|||+|++||+++..
T Consensus 111 R~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~---- 185 (349)
T PRK08664 111 RMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPG---- 185 (349)
T ss_pred cCCCCCCcCChhhCHHHHcChHhhHhhccCCceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCccc----
Confidence 347899999999886631 125999999999999999999999 999999999999999996532
Q ss_pred hhHHhhhhcccccccCCCch-H---HHHHHH--------ccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHH
Q 022704 151 RDLRRARAAALNIVPTSTGA-A---KAVALV--------LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAA 218 (293)
Q Consensus 151 ~d~r~~r~~a~NIIP~~tGa-~---k~~~kv--------lPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~ 218 (293)
+..+.+++|++|+..|. - .|+.++ +|.++.+|+.+|+||||++||+.+++++++++++.+|++++
T Consensus 186 ---~~~~~~~~N~~p~~~~~ehrh~~Ei~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~ 262 (349)
T PRK08664 186 ---VPSMDIVDNVIPYIGGEEEKIEKETLKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREA 262 (349)
T ss_pred ---chhhhhhcCcccccCchhhhhhHHHHHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHH
Confidence 12456899999999875 1 133343 45567789999999999999999999999999999999999
Q ss_pred HHHccc
Q 022704 219 FRESAD 224 (293)
Q Consensus 219 l~~a~~ 224 (293)
|+++..
T Consensus 263 ~~~~~~ 268 (349)
T PRK08664 263 LESFKG 268 (349)
T ss_pred HHhccC
Confidence 998764
No 33
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.92 E-value=2.5e-24 Score=206.23 Aligned_cols=233 Identities=16% Similarity=0.102 Sum_probs=165.7
Q ss_pred CCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CC-C------------------CCeEEecCCcCCCCCCC
Q 022704 46 TATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KG-D------------------IPTYVVGVNADAYKPDE 102 (293)
Q Consensus 46 ~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~-d------------------vPlvVpgVN~~~~~~~~ 102 (293)
+.++|+||.|++...+.+.++.++++|+ .|||+++ ++ + +|+.+||+|.+.++. .
T Consensus 66 ~~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~~-~ 142 (343)
T PRK00436 66 LAGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIKG-A 142 (343)
T ss_pred hcCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhcC-C
Confidence 5689999999999999999999999988 8999887 23 4 799999999998875 5
Q ss_pred CeeeCCCcchhhhhhHHHHHhhhcCcc--EEEEeeecccccch-hhhccchhhHHhhhhcccccccCCCchHHHHHHHcc
Q 022704 103 PIISNASCTTNCLAPFVKVLDQKFGII--KGTMTTTHSYTGDQ-RLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLP 179 (293)
Q Consensus 103 ~IISn~sCtTn~lap~lk~L~~~fgI~--~~~~TT~havsg~q-~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kvlP 179 (293)
+||+||+|+|.+++.+|+||++..+|+ +++++|||++||+. ++++..+...+.+.-.++|++|+. ...|+.+.+.
T Consensus 143 ~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~~~~~y~~~~h~--h~~Ei~~~l~ 220 (343)
T PRK00436 143 RLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNENLRPYKVGGHR--HTPEIEQELS 220 (343)
T ss_pred CEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhhcCCeeecccCCCC--CHHHHHHHHH
Confidence 899999999999999999999998898 89999999999994 455554422233334478888876 3444544443
Q ss_pred ccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCC-ce-eccCCCCCceeeEeCCCc
Q 022704 180 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP-LV-SVDFRCSDVSSTVDSSLT 257 (293)
Q Consensus 180 eL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~-~V-S~D~~~~~~s~i~d~~~t 257 (293)
.+.++++.||+||||++||++.++++++++++.+|++++|+++-++ -++| .+-+++ .. -.|..|..+-.|- -...
T Consensus 221 ~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~-~~~v-~v~~~~~~p~~~~v~g~~~~~ig-~~~d 297 (343)
T PRK00436 221 ALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYAD-EPFV-RVLPEGQYPETKSVRGSNFCDIG-FAVD 297 (343)
T ss_pred HhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCC-CCcE-EEeCCCCCcchhhhCCCCeEEEE-EEEc
Confidence 3322799999999999999999999999999999999999864321 1122 222221 10 1133343332221 0100
Q ss_pred eeeCCceEEEEEEeCCC-CchhhhHHHHHHHH
Q 022704 258 LVMGDDMVKVIAWYDNE-WGYSQRVVDLADIV 288 (293)
Q Consensus 258 ~~~~~~~vkl~~WyDNE-~gys~r~~dl~~~~ 288 (293)
.+++.+.+.+=-||= .|=|-+-+-.++.+
T Consensus 298 --~~~~~~~~~~~~DNL~kGAA~~Avq~~nl~ 327 (343)
T PRK00436 298 --ERTGRLVVVSAIDNLVKGAAGQAVQNMNIM 327 (343)
T ss_pred --CCCCEEEEEEEecccchhHHHHHHHHHHHH
Confidence 013456676778884 35555555555544
No 34
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.92 E-value=1.8e-24 Score=207.58 Aligned_cols=260 Identities=15% Similarity=0.062 Sum_probs=171.7
Q ss_pred CCCCceeE--EC---CE-EEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CC---
Q 022704 18 PSASLKPM--LN---QL-VLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KG--- 84 (293)
Q Consensus 18 ~s~g~~~~--f~---g~-~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~--- 84 (293)
+|+|+++. |+ +. .+.+ ++.+.+.+ ..++|+||+|++...+++.+++++++|+ +|||+++ ++
T Consensus 36 ~sagk~~~~~~~~l~~~~~~~~---~~~~~~~~-~~~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~ 109 (346)
T TIGR01850 36 ESAGKPVSEVHPHLRGLVDLNL---EPIDEEEI-AEDADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEV 109 (346)
T ss_pred hhcCCChHHhCccccccCCcee---ecCCHHHh-hcCCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhh
Confidence 57898876 55 32 2223 21222223 1479999999999999999999999997 8898887 33
Q ss_pred ----------------CCCeEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCcc--EEEEeeecccccchh-h
Q 022704 85 ----------------DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGII--KGTMTTTHSYTGDQR-L 145 (293)
Q Consensus 85 ----------------dvPlvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~--~~~~TT~havsg~q~-~ 145 (293)
++|+.+||+|.+.++. .+||+||+|++.+++.+|+||++.+.|+ +++++|+|++||+.+ .
T Consensus 110 y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~ 188 (346)
T TIGR01850 110 YEKWYGFEHAGPELLQEAVYGLPELHREEIKG-ARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKA 188 (346)
T ss_pred hHHhcCCCCCChhhhcCceEECCccCHHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCc
Confidence 5899999999998864 6799999999999999999999998887 899999999999944 4
Q ss_pred hccchhhHHhhhhcccccccCCC--chHHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcc
Q 022704 146 LDASHRDLRRARAAALNIVPTST--GAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 223 (293)
Q Consensus 146 ~d~~~~d~r~~r~~a~NIIP~~t--Ga~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~ 223 (293)
.+..+...+...-.+.|++|+.. -..++++|++. -+.+++.||+|||+++||+..++++++++++.+|++++|+++-
T Consensus 189 ~~~~~~~~~~~~~~~y~~~~h~h~~Ei~~~l~~~~~-~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y 267 (346)
T TIGR01850 189 SPANHFPEVNENLRPYKVTGHRHTPEIEQELGRLAG-GKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFY 267 (346)
T ss_pred cccccchhhcCCeeeeccCCcCcHHHHHHHHHHhcC-CCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHh
Confidence 45444222222223345555541 11223344442 1236999999999999999999999999999999999998654
Q ss_pred cc-cccCcccccCCCceeccCCCCCceeeEeCCCceeeCCceEEEEEEeCCCC-chhhhHHHHHHHHh
Q 022704 224 DN-ELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEW-GYSQRVVDLADIVA 289 (293)
Q Consensus 224 ~~-~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vkl~~WyDNE~-gys~r~~dl~~~~~ 289 (293)
++ ++--++.-.+-|-. .+..|..+-.|- ..... .++.+.+++=-||=. |=|-+-|-.++.|.
T Consensus 268 ~~~~~V~v~~~~~~p~~-~~v~g~n~~~ig-~~~d~--~~~~l~~~~~~DNL~KGAAg~AVq~~n~~~ 331 (346)
T TIGR01850 268 ADEPFVRVLPEGEYPST-KAVIGSNFCDIG-FAVDE--RTGRVVVVSAIDNLVKGAAGQAVQNMNLMF 331 (346)
T ss_pred CCCCcEEEeCCCCCcCh-HHhcCCCeEEEE-EEEcC--CCCEEEEEEEeechhhhHHHHHHHHHHHHc
Confidence 32 22112211001111 133343332221 11000 123455666678853 55555555555553
No 35
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.91 E-value=3e-25 Score=203.39 Aligned_cols=205 Identities=18% Similarity=0.150 Sum_probs=161.8
Q ss_pred CcccCccccCCCCCCCCCCceeEECC------------EEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHH
Q 022704 3 PEVSSRPLTSSSTTPPSASLKPMLNQ------------LVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQ 70 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~s~g~~~~f~g------------~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~ 70 (293)
|+.+-.-|..| .-||||+..|.| .++.|++ -++++ |.++||||+..|...+.|.-+.+.+
T Consensus 28 P~f~ikvLgAS---~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~e---c~~~~--F~ecDIvfsgldad~ageiek~f~e 99 (361)
T KOG4777|consen 28 PYFSIKVLGAS---KRSAGKRYAFAGNWKQTDLLPESAHEYTVEE---CTADS--FNECDIVFSGLDADIAGEIEKLFAE 99 (361)
T ss_pred Ccceeeeeccc---ccccCCceEecccchhcccccchhhhhhHhh---cChhh--cccccEEEecCCchhhhhhhHHHHh
Confidence 44444444333 358999999999 6776743 33344 5899999999999999999999999
Q ss_pred cCCCcEEecCCC----CCCCCeEEecCCcCCCCC-C----------CCeeeCCCcchhhhhhHHHHHhhhc-CccEEEEe
Q 022704 71 AGAKKVLITAPG----KGDIPTYVVGVNADAYKP-D----------EPIISNASCTTNCLAPFVKVLDQKF-GIIKGTMT 134 (293)
Q Consensus 71 aGakkVVIs~ps----~~dvPlvVpgVN~~~~~~-~----------~~IISn~sCtTn~lap~lk~L~~~f-gI~~~~~T 134 (293)
+|- +|+||+. .+++|||||+||+|+++. . .-||+|+||+|..+++.|||||++| .|++..++
T Consensus 100 ag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~ 177 (361)
T KOG4777|consen 100 AGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVS 177 (361)
T ss_pred cCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeeeEEeechhHHhhccchhhhhhh
Confidence 999 9999987 478999999999999864 1 2399999999999999999999999 69999999
Q ss_pred eecccccchhhhccchhhHHhhhhcccccccCCCchHH----HHHHHccccC-----------CCeeEEEEecCCCeeeE
Q 022704 135 TTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAK----AVALVLPALK-----------GKLNGIALRVPTPNVSV 199 (293)
Q Consensus 135 T~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k----~~~kvlPeL~-----------gkv~~tavRVPV~~gs~ 199 (293)
||||+||+...--. ..-.+..||+|.+.|... +..|+|-.++ .++++.|-||||.+||+
T Consensus 178 t~QAiSGAG~apgv------~~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~ 251 (361)
T KOG4777|consen 178 TYQAISGAGAAPGV------ELVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHV 251 (361)
T ss_pred hhhhhccCCcCCCc------hHHHHHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhhhhcceeeEecCce
Confidence 99999998431111 123477899999977643 4456653221 25788999999999999
Q ss_pred EEEEEEecCcC--cHHHHHHHHHHcc
Q 022704 200 VDLVVQVSKKT--FAEEVNAAFRESA 223 (293)
Q Consensus 200 ~dltv~~~k~v--~~eei~~~l~~a~ 223 (293)
..+...|..++ +.+|+++++.+..
T Consensus 252 ~cis~~f~~~~~pa~~qv~~~l~eyv 277 (361)
T KOG4777|consen 252 KCISTCFRVPVMPAHAQVVNLLFEYV 277 (361)
T ss_pred EEEEEEeecCCCCcHHHHHHHHHhcc
Confidence 99999998543 6889999998875
No 36
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.90 E-value=5.1e-23 Score=199.98 Aligned_cols=202 Identities=10% Similarity=-0.009 Sum_probs=152.3
Q ss_pred CCCCCceeEECCEEEEEEEee-cccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCC------
Q 022704 17 PPSASLKPMLNQLVLMASLLM-ARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGD------ 85 (293)
Q Consensus 17 ~~s~g~~~~f~g~~~~v~~~~-~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~d------ 85 (293)
..|+|+++.+....+.-..+. ..+.+..+|+++|+||+|+|...++++++. +++|+ +|||.++ +++
T Consensus 72 ~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~ 148 (381)
T PLN02968 72 DRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEW 148 (381)
T ss_pred hhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhc
Confidence 368899887655322111000 011222335789999999999999999988 57787 8898887 455
Q ss_pred --CCeEEecCCcCC-CC---------CCCCeeeCCCcchhhhhhHHHHHhhhcCc--cEEEEeeecccccc-hhhhccch
Q 022704 86 --IPTYVVGVNADA-YK---------PDEPIISNASCTTNCLAPFVKVLDQKFGI--IKGTMTTTHSYTGD-QRLLDASH 150 (293)
Q Consensus 86 --vPlvVpgVN~~~-~~---------~~~~IISn~sCtTn~lap~lk~L~~~fgI--~~~~~TT~havsg~-q~~~d~~~ 150 (293)
+|+++||+|.+. |. ...+||+||+|+|.+++.+|+||+++++| ++++++|+|++||+ .+.++..+
T Consensus 149 y~~p~~~pe~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l 228 (381)
T PLN02968 149 YGHPHRAPELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANL 228 (381)
T ss_pred cCCCCCCcccchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhh
Confidence 799999999885 42 13579999999999999999999999999 78999999999999 33444422
Q ss_pred -hhHH-hhhhcccccccCCCchHHHHHHHc-cccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcc
Q 022704 151 -RDLR-RARAAALNIVPTSTGAAKAVALVL-PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 223 (293)
Q Consensus 151 -~d~r-~~r~~a~NIIP~~tGa~k~~~kvl-PeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~ 223 (293)
.... .-|+.++|..||..-..+.+.+++ +++ +++.||+|||+++||+..++++++++++.+|++++|+++.
T Consensus 229 ~~e~~~n~~~y~~~~h~h~pEie~~~~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y 302 (381)
T PLN02968 229 YTEIAEGIGAYGVTRHRHVPEIEQGLADAAGSKV--TPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERY 302 (381)
T ss_pred HHHhcccceeeccCCCCCcchHHHHHHHHhCCCC--CEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhC
Confidence 2111 137788899888733333344554 333 7999999999999999999999999999999999999953
No 37
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.80 E-value=1.2e-19 Score=155.35 Aligned_cols=89 Identities=39% Similarity=0.538 Sum_probs=76.9
Q ss_pred CCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.+..+.++|+.+.+ +++.++...+| .++|+|+||||.|.+++.++.|+++||||||||+|++++.++||+|||++.
T Consensus 59 ~~~~l~i~g~~i~~--~~~~~p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~ 136 (149)
T smart00846 59 DEDGLIVNGKKIKV--LAERDPANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDE 136 (149)
T ss_pred eCCEEEECCEEEEE--EecCChHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHH
Confidence 35668889998766 56666655555 589999999999999999999999999999999999655579999999999
Q ss_pred CCCCCCeeeCCCc
Q 022704 98 YKPDEPIISNASC 110 (293)
Q Consensus 98 ~~~~~~IISn~sC 110 (293)
|+++++||||+||
T Consensus 137 ~~~~~~iiS~aSC 149 (149)
T smart00846 137 YDPEDHIVSNASC 149 (149)
T ss_pred cCCCCCEEEcCCC
Confidence 9987779999999
No 38
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.79 E-value=6.7e-20 Score=157.48 Aligned_cols=88 Identities=42% Similarity=0.567 Sum_probs=76.0
Q ss_pred CceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCC-CCeEEecCCcCC
Q 022704 21 SLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADA 97 (293)
Q Consensus 21 g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~d-vPlvVpgVN~~~ 97 (293)
+..|..+|+.+.+ +++.+++..+| .++|+|+||||.|.+++.++.|+++||||||+|+|++++ +|+||+|||++.
T Consensus 61 ~~~l~v~G~~I~~--~~~~dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~ 138 (151)
T PF00044_consen 61 DDGLIVNGKKIKV--TEERDPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDD 138 (151)
T ss_dssp TTEEEETTEEEEE--EHTSSGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGG
T ss_pred cceeEeecccccc--hhhhhhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHH
Confidence 5668899998765 67777777777 699999999999999999999999999999999999765 899999999999
Q ss_pred CCCCCCeeeCCCc
Q 022704 98 YKPDEPIISNASC 110 (293)
Q Consensus 98 ~~~~~~IISn~sC 110 (293)
|++++.||||+||
T Consensus 139 ~~~~~~iIS~aSC 151 (151)
T PF00044_consen 139 YDPEHHIISNASC 151 (151)
T ss_dssp GTTTTSEEEE--H
T ss_pred hCCCCCEEEccCC
Confidence 9987799999999
No 39
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.77 E-value=2.6e-18 Score=163.13 Aligned_cols=174 Identities=10% Similarity=-0.003 Sum_probs=133.8
Q ss_pred CCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecCCcCCCCC--CCCeeeCCCcchhhhhhH
Q 022704 45 LTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP--DEPIISNASCTTNCLAPF 118 (293)
Q Consensus 45 ~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgVN~~~~~~--~~~IISn~sCtTn~lap~ 118 (293)
.|+++|+||+|++...+++++++..++|+ +|||.++ ++++|+.+||+|++..+. ..++|+||+|.+.+++..
T Consensus 47 ~~~~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC~~Ta~~la 124 (313)
T PRK11863 47 LLNAADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGCYPTGAIAL 124 (313)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCcHHHHHHHH
Confidence 46789999999999999999999999999 8999887 568999999999765432 468999999999999999
Q ss_pred HHHHhhhcCccEEEEeeeccccc---c-hhhhccchhhHHhhhhcccccccCCCc-hH---HHHHHHccccCCCeeEEEE
Q 022704 119 VKVLDQKFGIIKGTMTTTHSYTG---D-QRLLDASHRDLRRARAAALNIVPTSTG-AA---KAVALVLPALKGKLNGIAL 190 (293)
Q Consensus 119 lk~L~~~fgI~~~~~TT~havsg---~-q~~~d~~~~d~r~~r~~a~NIIP~~tG-a~---k~~~kvlPeL~gkv~~tav 190 (293)
|+||++...|++...++++++|| + .+..+..+.+ + --+..|++|+.-| .. .|+.+.|..+ -++.-+..
T Consensus 125 L~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~~~~~--~-~~~~~n~~~Y~~~~~HrH~pEi~~~l~~~-~~~~F~Ph 200 (313)
T PRK11863 125 LRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYEAA--P-DGKAPAFRLYGLGLAHKHLPEMQAHAGLA-RRPIFTPS 200 (313)
T ss_pred HHHHHHcCCcccCceEEEEEccccccCCccchHHHhhh--h-hhhccCeeeccCCcCCcchHHHHHHhccc-cCcEEEee
Confidence 99999976666665788999964 4 3333322200 0 1256799999866 33 3556665433 12333444
Q ss_pred ecCCCeeeEEEEEEEe---cCcCcHHHHHHHHHHccc
Q 022704 191 RVPTPNVSVVDLVVQV---SKKTFAEEVNAAFRESAD 224 (293)
Q Consensus 191 RVPV~~gs~~dltv~~---~k~v~~eei~~~l~~a~~ 224 (293)
-+|+.+|+...+++++ +++++.+|++++++++-+
T Consensus 201 l~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~ 237 (313)
T PRK11863 201 VGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYA 237 (313)
T ss_pred EccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcC
Confidence 5899999999999997 888999999999998754
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.68 E-value=2e-16 Score=149.90 Aligned_cols=174 Identities=9% Similarity=-0.005 Sum_probs=133.9
Q ss_pred CCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecCCcCCCCC--CCCeeeCCCcchhhhhhHH
Q 022704 46 TATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP--DEPIISNASCTTNCLAPFV 119 (293)
Q Consensus 46 ~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgVN~~~~~~--~~~IISn~sCtTn~lap~l 119 (293)
++++|+||+|++...++++++...++|| +|||.++ ++++|..+||+|++..+. ..++||||+|.+.+++.+|
T Consensus 47 ~~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~aTa~~LaL 124 (310)
T TIGR01851 47 LNAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYPTGFIALM 124 (310)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCHHHHHHHHH
Confidence 3679999999999999999999989999 8998887 568999999998765432 4689999999999999999
Q ss_pred HHHhhhcCccEEEEeeeccccc---c-hhhhccchhhHHhhhhcccccccCCCc-hH---HHHHHHccccCCCeeEEEEe
Q 022704 120 KVLDQKFGIIKGTMTTTHSYTG---D-QRLLDASHRDLRRARAAALNIVPTSTG-AA---KAVALVLPALKGKLNGIALR 191 (293)
Q Consensus 120 k~L~~~fgI~~~~~TT~havsg---~-q~~~d~~~~d~r~~r~~a~NIIP~~tG-a~---k~~~kvlPeL~gkv~~tavR 191 (293)
+||+++..|++...++|+++|| + .+..++.++..++. -...|+-|+.-+ -- -|+...+..+ -++.-+..-
T Consensus 125 ~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~-~~v~FtPhl 202 (310)
T TIGR01851 125 RPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA-LPPIFTPAV 202 (310)
T ss_pred HHHHHcCCccccceEEEEeccccCccChhhhHHhhhcccch-hhccCceeccCCCCCCcHHHHHHHhCCC-CCEEEEeEE
Confidence 9999987777776799999987 3 33333333211111 124567777644 32 3444444322 357778889
Q ss_pred cCCCeeeEEEEEEEe---cCcCcHHHHHHHHHHcc
Q 022704 192 VPTPNVSVVDLVVQV---SKKTFAEEVNAAFRESA 223 (293)
Q Consensus 192 VPV~~gs~~dltv~~---~k~v~~eei~~~l~~a~ 223 (293)
+|..+|-...+++++ +++++.+++.++++++=
T Consensus 203 ~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y 237 (310)
T TIGR01851 203 GNFAQGMAVTIPLHLQTLASKVSPADIHAALADYY 237 (310)
T ss_pred ccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 999999999999999 88899999999999764
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.44 E-value=1e-13 Score=131.16 Aligned_cols=160 Identities=16% Similarity=0.074 Sum_probs=112.7
Q ss_pred cCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCCCCC--CCCeeeCCCcchhhhhhHHHH
Q 022704 44 FLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCLAPFVKV 121 (293)
Q Consensus 44 f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~~~~--~~~IISn~sCtTn~lap~lk~ 121 (293)
.+|.++|+||+|||....++++++++++|+ .||+..+....|++||+||.+.+.. ..+||+||+|+|++++.+|++
T Consensus 66 ~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~v~Al~~ 143 (302)
T PRK08300 66 PEFDDIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAVSR 143 (302)
T ss_pred cCCCCCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHHHHHhcc
Confidence 456889999999999999999999999998 8888876557899999999887654 368999999999999999999
Q ss_pred HhhhcCccEEEEeeecccc-cc--hhhhccchhhHHhhhhcccccccCCCchHHHHHHHccccCCCeeEEEEecCCCeee
Q 022704 122 LDQKFGIIKGTMTTTHSYT-GD--QRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVS 198 (293)
Q Consensus 122 L~~~fgI~~~~~TT~havs-g~--q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kvlPeL~gkv~~tavRVPV~~gs 198 (293)
+++. ++.+++ +||++.| |. ...+|++...-++ .|-..+|+.+ +|.+=-||.---.+-+|
T Consensus 144 v~~~-~~~eIv-at~~s~s~g~gtr~nidE~~~~t~~-------~~~~~~g~~~--~kai~~~npa~p~~~m~------- 205 (302)
T PRK08300 144 VAPV-HYAEIV-ASIASKSAGPGTRANIDEFTETTSR-------AIEKVGGAAR--GKAIIILNPAEPPLIMR------- 205 (302)
T ss_pred cCcC-ceeeee-eeehhhccCCcccccHHHHHHHHHH-------HHHHhcCccc--ceEEEEecCCCCCccce-------
Confidence 8765 888877 9999999 43 5567765432111 1222334433 23221111111111233
Q ss_pred EEEEEEEecCcCcHHHHHHHHHHccc
Q 022704 199 VVDLVVQVSKKTFAEEVNAAFRESAD 224 (293)
Q Consensus 199 ~~dltv~~~k~v~~eei~~~l~~a~~ 224 (293)
-.++|..+.+.+.+.|++.+.+.-+
T Consensus 206 -~tv~~~~~~~~~~~~i~~~~~~~~~ 230 (302)
T PRK08300 206 -DTVYCLVDEDADQDAIEASVHAMVA 230 (302)
T ss_pred -eeEEEeeCCCCCHHHHHHHHHHHHH
Confidence 1345556666788888888766543
No 42
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.36 E-value=1.6e-12 Score=114.53 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=80.9
Q ss_pred HHHHhhh-cCccEEEEeeecccccc-hhhhccchh------------hHHhhhhcccccccCCCc-------hHHHHH--
Q 022704 119 VKVLDQK-FGIIKGTMTTTHSYTGD-QRLLDASHR------------DLRRARAAALNIVPTSTG-------AAKAVA-- 175 (293)
Q Consensus 119 lk~L~~~-fgI~~~~~TT~havsg~-q~~~d~~~~------------d~r~~r~~a~NIIP~~tG-------a~k~~~-- 175 (293)
|+||+++ ++++++.++|||++||+ .++++++.. +.....++++|++|+..+ +.+++.
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 6899998 99999999999999999 445555321 123346899999999855 333332
Q ss_pred -----HHccccCCCeeEEEEecCCCeeeEEEEEEEec-CcCcHHHHHHHHHHc
Q 022704 176 -----LVLPALKGKLNGIALRVPTPNVSVVDLVVQVS-KKTFAEEVNAAFRES 222 (293)
Q Consensus 176 -----kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~-k~v~~eei~~~l~~a 222 (293)
+++..-. +++.||+||||++||+..++++++ ++.+++++.++|.+.
T Consensus 81 ~~~~~~~l~~~~-~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 81 IAETRKILGFPP-RVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKG 132 (184)
T ss_dssp HHHHHHHCTETT-EEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTS
T ss_pred hccccceeeccc-cccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCC
Confidence 3443323 899999999999999999999995 899999999999876
No 43
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.97 E-value=5e-10 Score=105.49 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=84.9
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCCCCC--CCCeeeCCCcchhhhhhHHHHHhh
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCLAPFVKVLDQ 124 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~~~~--~~~IISn~sCtTn~lap~lk~L~~ 124 (293)
.++|+||+||+.....+.+.+++++|+ .||+..+....|++||+||.+.... ..+||++++|+|+.++..++.+++
T Consensus 63 ~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~~al~r~~d 140 (285)
T TIGR03215 63 PDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAISRVAP 140 (285)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHHHHHHHhhc
Confidence 368999999999999999999999998 6776655447899999999887653 468999999999999999999999
Q ss_pred hcCccEEEEeeeccccc-c--hhhhccchh
Q 022704 125 KFGIIKGTMTTTHSYTG-D--QRLLDASHR 151 (293)
Q Consensus 125 ~fgI~~~~~TT~havsg-~--q~~~d~~~~ 151 (293)
...+ .+++||++.|+ . ...+|++..
T Consensus 141 ~~~~--~iv~ti~s~S~g~g~r~~idel~~ 168 (285)
T TIGR03215 141 VHYA--EIVASIASRSAGPGTRANIDEFTE 168 (285)
T ss_pred cccE--EEEEEEEeeccCCCchhHHHHHHH
Confidence 7755 67788999996 3 566777653
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.62 E-value=6.4e-07 Score=86.24 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=119.3
Q ss_pred CCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC---C--------------------CCCeEEecCCcCCCCCCC
Q 022704 46 TATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK---G--------------------DIPTYVVGVNADAYKPDE 102 (293)
Q Consensus 46 ~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~---~--------------------dvPlvVpgVN~~~~~~~~ 102 (293)
.+++|+||.|+-.-.+++.++..++.|+ .|||.+.+ . +..==.||.|.++++ .-
T Consensus 68 ~~~~DvvFlalPhg~s~~~v~~l~~~g~--~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~-~A 144 (349)
T COG0002 68 LDECDVVFLALPHGVSAELVPELLEAGC--KVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIR-GA 144 (349)
T ss_pred cccCCEEEEecCchhHHHHHHHHHhCCC--eEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHh-cC
Confidence 4568999999999999999999999999 48877652 0 111123566666665 35
Q ss_pred CeeeCCCcchhhhhhHHHHHhhh--cCccE-EEEeeecccccchhhh-ccchhhHHhhhhcccccccCCCchHH---HHH
Q 022704 103 PIISNASCTTNCLAPFVKVLDQK--FGIIK-GTMTTTHSYTGDQRLL-DASHRDLRRARAAALNIVPTSTGAAK---AVA 175 (293)
Q Consensus 103 ~IISn~sCtTn~lap~lk~L~~~--fgI~~-~~~TT~havsg~q~~~-d~~~~d~r~~r~~a~NIIP~~tGa~k---~~~ 175 (293)
+.|+||.|-..+...+|+||.+. ..+.. .++-..-.+||+.+-. ...+-. -...|+.|+.-..-+ |+.
T Consensus 145 ~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~-----e~~~~~~~Y~~~~HrH~pEi~ 219 (349)
T COG0002 145 KLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFP-----EVNDSLRPYGLTGHRHTPEIE 219 (349)
T ss_pred CEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccch-----hhccccccccccccCchHHHH
Confidence 79999999999999999999875 22344 2444444555552211 111110 133488887622233 444
Q ss_pred HHccccC---CCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccc
Q 022704 176 LVLPALK---GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 225 (293)
Q Consensus 176 kvlPeL~---gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~ 225 (293)
.-|..+. .++.-|..-+|..+|-+..+++.+++.++.+|+++++++.=++
T Consensus 220 q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~ 272 (349)
T COG0002 220 QHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAG 272 (349)
T ss_pred HHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCC
Confidence 4444343 3467778889999999999999999999999999999887543
No 45
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.53 E-value=5.4e-09 Score=85.75 Aligned_cols=73 Identities=19% Similarity=0.063 Sum_probs=58.0
Q ss_pred CCCceeEECC------EEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCe
Q 022704 19 SASLKPMLNQ------LVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPT 88 (293)
Q Consensus 19 s~g~~~~f~g------~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPl 88 (293)
|+|+++.+.- ..+.++ +.+.+. |.++|+||+|++...+++.+++.+++|+ .|||.++ +++.|+
T Consensus 36 ~~g~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~ 108 (121)
T PF01118_consen 36 SAGKPLSEVFPHPKGFEDLSVE---DADPEE--LSDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPY 108 (121)
T ss_dssp TTTSBHHHTTGGGTTTEEEBEE---ETSGHH--HTTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEE
T ss_pred ccCCeeehhccccccccceeEe---ecchhH--hhcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCE
Confidence 8999999884 466562 222233 5799999999999999999999999999 8998887 468999
Q ss_pred EEecCCcCCC
Q 022704 89 YVVGVNADAY 98 (293)
Q Consensus 89 vVpgVN~~~~ 98 (293)
++||+|.+.+
T Consensus 109 ~~pevn~~~i 118 (121)
T PF01118_consen 109 GLPEVNREQI 118 (121)
T ss_dssp E-HHHHHHHH
T ss_pred EeCCcCHHHH
Confidence 9999998765
No 46
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.36 E-value=9.1e-05 Score=60.31 Aligned_cols=80 Identities=21% Similarity=0.123 Sum_probs=53.1
Q ss_pred CCCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHH---HHHHcCCCcEEecCCC----CCCCCeE
Q 022704 17 PPSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAG---KHIQAGAKKVLITAPG----KGDIPTY 89 (293)
Q Consensus 17 ~~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~---~hl~aGakkVVIs~ps----~~dvPlv 89 (293)
+.|.|+++.+.+..+.-......+.+.+...+.|+||.|++.....+... ++++.|+ +||+.++ .++.|++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~ 111 (122)
T smart00859 34 ARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYG 111 (122)
T ss_pred hhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEE
Confidence 46888888877654321111112222333358999999999887777433 3345666 9997776 4678999
Q ss_pred EecCCcCCC
Q 022704 90 VVGVNADAY 98 (293)
Q Consensus 90 VpgVN~~~~ 98 (293)
+|++|.+.+
T Consensus 112 ~~~~n~~~~ 120 (122)
T smart00859 112 LPEVNPEAI 120 (122)
T ss_pred cCccCHHHh
Confidence 999998755
No 47
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=95.70 E-value=0.028 Score=52.58 Aligned_cols=197 Identities=21% Similarity=0.235 Sum_probs=106.9
Q ss_pred cCCCcEEecCCCCC-CCC--eEE---ecCCcC-CCCCCCCeeeCCCcchh----hhhhHHHHHhhhcCccEEEEeeeccc
Q 022704 71 AGAKKVLITAPGKG-DIP--TYV---VGVNAD-AYKPDEPIISNASCTTN----CLAPFVKVLDQKFGIIKGTMTTTHSY 139 (293)
Q Consensus 71 aGakkVVIs~ps~~-dvP--lvV---pgVN~~-~~~~~~~IISn~sCtTn----~lap~lk~L~~~fgI~~~~~TT~hav 139 (293)
+--|-++|+-+.+- -.| -.+ ||+|+. +++ ..+.|+||.|-.. .|.|++|.+.-. -+ +-.+-.|
T Consensus 109 ~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPGCYaTgsQl~l~Pllk~i~g~---p~--ifgvSGy 182 (340)
T KOG4354|consen 109 SDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPGCYATGSQLPLVPLLKAILGK---PE--IFGVSGY 182 (340)
T ss_pred cCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCCcccccCcccchHHHHHhcCC---cc--eeeeccc
Confidence 34455777665421 123 333 567743 344 3568999999654 357777776532 22 1222345
Q ss_pred ccchhhhccchhhHHhhhhcccccccCCCchHHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHH
Q 022704 140 TGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAF 219 (293)
Q Consensus 140 sg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l 219 (293)
||+...-. +..| -.-++.|+||..-.-...++.|--.++-.+.-|-.-.|-+.|-...+++..++.++.||+++++
T Consensus 183 SGAGtkps-pkNd---~~~l~nnlipY~ltdHiHerEIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~ly 258 (340)
T KOG4354|consen 183 SGAGTKPS-PKND---YSELANNLIPYGLTDHIHEREISQRSKVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLY 258 (340)
T ss_pred cCCCCCCC-CccC---HHHHhcCCccccccccchhHhHHHhhCCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHH
Confidence 65522110 1111 2347899999862222223333223433454455556778888888999999999999999999
Q ss_pred HHcccc-cccCcccccCCCceeccCCCCCceeeEeCCCceeeCCceEEEEEEeCCCC-chhhhHH
Q 022704 220 RESADN-ELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEW-GYSQRVV 282 (293)
Q Consensus 220 ~~a~~~-~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vkl~~WyDNE~-gys~r~~ 282 (293)
+..-|+ +|-.++ .|-|+| -|..|.-|. .+-.---..-+++ +-+++=-||-. |=+.|-+
T Consensus 259 k~~YedE~lvhV~--ddvPlv-kdv~gsh~v-~~ggF~~~~~g~R-avii~tIDNLlKGAatQaL 318 (340)
T KOG4354|consen 259 KTSYEDEELVHVL--DDVPLV-KDVRGSHYV-HMGGFPDRIPGDR-AVIISTIDNLLKGAATQAL 318 (340)
T ss_pred HhhccCcceeeee--ccccce-eccCCccee-EeccccCCCCCce-EEEEEehhhhhhhHHHHHH
Confidence 987654 354443 234544 355554432 2221111222333 33666677743 4444443
No 48
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.96 E-value=0.27 Score=45.09 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=54.2
Q ss_pred cCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC-CCC-CCCeeeCCCcchhhhhhHHHH
Q 022704 44 FLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA-YKP-DEPIISNASCTTNCLAPFVKV 121 (293)
Q Consensus 44 f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~-~~~-~~~IISn~sCtTn~lap~lk~ 121 (293)
.+|..+|+|||+|........|++..++|.+ .|+-....--|-|||-+|.+. ++. .-+.|+ |-.++-.|++..
T Consensus 67 p~~~di~lvfdatsa~~h~~~a~~~ae~gi~--~idltpaaigp~vvp~~n~~eh~~a~nvnmvt---cggqatipiv~a 141 (310)
T COG4569 67 PEFADIDLVFDATSAGAHVKNAAALAEAGIR--LIDLTPAAIGPYVVPVVNLEEHVDALNVNMVT---CGGQATIPIVAA 141 (310)
T ss_pred CCCCCcceEEeccccchhhcchHhHHhcCCc--eeecchhccCCeeccccchHHhcCCCCcceEe---ecCcccchhhhh
Confidence 4578899999999999999999999999994 454333234689999999775 332 334555 555555566655
Q ss_pred Hhh
Q 022704 122 LDQ 124 (293)
Q Consensus 122 L~~ 124 (293)
..+
T Consensus 142 vsr 144 (310)
T COG4569 142 VSR 144 (310)
T ss_pred hhh
Confidence 544
No 49
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=75.54 E-value=2.3 Score=34.01 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=25.3
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITA 80 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ 80 (293)
...|+|+|||+.....++.+.++++|. =||++
T Consensus 58 ~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 58 PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 379999999999888899999999998 55544
No 50
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=73.20 E-value=2.3 Score=40.21 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=32.8
Q ss_pred ccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecC
Q 022704 41 SRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITA 80 (293)
Q Consensus 41 ~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ 80 (293)
.+.|--...|+|+||+|...-++++++.|++|+.-+|+|-
T Consensus 55 l~~ll~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~Sv 94 (267)
T PRK13301 55 LPGLLAWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSA 94 (267)
T ss_pred HHHHhhcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEECh
Confidence 3444225689999999999999999999999998777763
No 51
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=54.76 E-value=21 Score=27.61 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=24.7
Q ss_pred EEEEecCcCcHHHHHH-HHHHcccccccCcccccCC
Q 022704 202 LVVQVSKKTFAEEVNA-AFRESADNELKGILSVCDE 236 (293)
Q Consensus 202 ltv~~~k~v~~eei~~-~l~~a~~~~lkgil~~te~ 236 (293)
++++..+..|+.+|++ ++++|..-||-+.|+=.++
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~ 37 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSS 37 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCc
Confidence 4667788899999999 6677877888887764433
No 52
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=53.53 E-value=9 Score=35.75 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=31.5
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
+.+|+++||++...-+++++++|++|..-+|+|--.
T Consensus 59 ~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 59 AEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechh
Confidence 689999999999999999999999999867776543
No 53
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=44.72 E-value=19 Score=33.37 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=27.9
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAP 81 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~p 81 (293)
..+|+|+|||+.....+++..++++|.. |++-.+
T Consensus 60 ~~~DvVve~t~~~~~~e~~~~aL~aGk~-Vvi~s~ 93 (265)
T PRK13303 60 QRPDLVVECAGHAALKEHVVPILKAGID-CAVISV 93 (265)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEEeCh
Confidence 5689999999999888999999999964 555333
No 54
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=43.05 E-value=34 Score=32.26 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=39.6
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEe--cCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhh
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVV--GVNADAYKPDEPIISNASCTTNCLAPFVKVLDQ 124 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVp--gVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~ 124 (293)
.++|+||||+|.....+.+-..++.|.+-+++..+.. +.++-+. .++...+.++..|+..-.++..-+.-+++.|.+
T Consensus 237 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~-~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~ 315 (355)
T cd08230 237 GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGG-GREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQAVEDLAQ 315 (355)
T ss_pred CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCC-CCccccChhhhhhhHhhcCcEEEEecCCchhhHHHHHHHHHh
Confidence 4789999999975445566677777664333433332 1111111 111222223345665555554445555555544
No 55
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=43.00 E-value=31 Score=26.08 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=30.9
Q ss_pred EEEEEecCcCcHHHHHHHHHHcccc--cccCcccccCCC-ceeccCCCC
Q 022704 201 DLVVQVSKKTFAEEVNAAFRESADN--ELKGILSVCDEP-LVSVDFRCS 246 (293)
Q Consensus 201 dltv~~~k~v~~eei~~~l~~a~~~--~lkgil~~te~~-~VS~D~~~~ 246 (293)
+++++.+++++.+.+.+.|++...+ ..||++.+.+++ ..-.+..++
T Consensus 3 s~~~~~~~p~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~ 51 (94)
T PF07683_consen 3 SVTFEFDRPFDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGG 51 (94)
T ss_dssp EEEEEESS-B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETT
T ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCC
Confidence 5788999999999999999985543 469999888763 333444444
No 56
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=42.12 E-value=6.9 Score=31.09 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=26.2
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
.++|+||||+|.-...+.+-..++.|.+-|++..+.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 479999999996556666777777777656665544
No 57
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=38.38 E-value=54 Score=24.54 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=36.5
Q ss_pred EEEEEecCcCcHHHHHHHHHHcccc--cccCcccccCCC--ceeccCCCCCce
Q 022704 201 DLVVQVSKKTFAEEVNAAFRESADN--ELKGILSVCDEP--LVSVDFRCSDVS 249 (293)
Q Consensus 201 dltv~~~k~v~~eei~~~l~~a~~~--~lkgil~~te~~--~VS~D~~~~~~s 249 (293)
.++++...+.+.+++.+.|++-..+ .+||++...+++ .+..++.++-+.
T Consensus 3 s~~~~~~~~~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 3 SFVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEecCCCCCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 5677888999999999999877643 579999887764 345566665443
No 58
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=37.34 E-value=30 Score=31.71 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=27.3
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEe
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLI 78 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVI 78 (293)
..+|+|++||+.....+++.+++++|.- |++
T Consensus 36 ~~vDaVviatp~~~H~e~a~~aL~aGkh-Vl~ 66 (229)
T TIGR03855 36 EDVDIVVEAASQEAVKEYAEKILKNGKD-LLI 66 (229)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 4699999999999999999999999964 444
No 59
>PRK06349 homoserine dehydrogenase; Provisional
Probab=37.22 E-value=32 Score=34.26 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=25.9
Q ss_pred CCCCcEEEeccCCC-CCHhhHHHHHHcCCCcEEecCC
Q 022704 46 TATPSISPGGTGVF-VDREGAGKHIQAGAKKVLITAP 81 (293)
Q Consensus 46 ~~~~DivlestG~~-~s~~~a~~hl~aGakkVVIs~p 81 (293)
...+|+|+||+|.. ...++...++++|. .||..++
T Consensus 70 d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 70 DPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred CCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 35799999999864 45688889999984 4555454
No 60
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.43 E-value=1.7e+02 Score=20.97 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=38.3
Q ss_pred ccCCCchHHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHH
Q 022704 164 VPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 221 (293)
Q Consensus 164 IP~~tGa~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~ 221 (293)
||-..|+-+.+-.+|.+ +..|+-...|-.-.....+.+.+++..+-..+++.+.|++
T Consensus 5 ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 5 FPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 56666776666667766 6788877777665555556677777765566666666655
No 61
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.64 E-value=35 Score=30.07 Aligned_cols=36 Identities=11% Similarity=-0.117 Sum_probs=25.7
Q ss_pred CCCCcEEEeccCCCCC------HhhHHHHHHcCCCcEEecCC
Q 022704 46 TATPSISPGGTGVFVD------REGAGKHIQAGAKKVLITAP 81 (293)
Q Consensus 46 ~~~~DivlestG~~~s------~~~a~~hl~aGakkVVIs~p 81 (293)
|.|+|.||.+++.... ...+.++.++|.|++|.|.-
T Consensus 62 l~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 62 LKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 5799999999996632 13355777899999987543
No 62
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=27.94 E-value=57 Score=30.20 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=26.5
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEe
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLI 78 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVI 78 (293)
.++|+|++|++...-.+++...+++|.. |++
T Consensus 60 ~~~DvVvi~a~~~~~~~~~~~al~~Gk~-Vvv 90 (265)
T PRK13304 60 EDVDLVVECASVNAVEEVVPKSLENGKD-VII 90 (265)
T ss_pred cCCCEEEEcCChHHHHHHHHHHHHcCCC-EEE
Confidence 6799999999998888999999999864 444
No 63
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=27.33 E-value=56 Score=29.79 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=41.1
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCCC-CCCCCeeeCCCcchhhhhhHHHHHhh
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY-KPDEPIISNASCTTNCLAPFVKVLDQ 124 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~~-~~~~~IISn~sCtTn~lap~lk~L~~ 124 (293)
.++|+||||+|.....+.+-..++.|.+-+++..... ..+ ..+|...+ .++..|+..-..+...+.-+++.|.+
T Consensus 186 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~ 260 (280)
T TIGR03366 186 RGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFP-GGP---VALDPEQVVRRWLTIRGVHNYEPRHLDQAVRFLAA 260 (280)
T ss_pred CCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCC-CCc---eeeCHHHHHhCCcEEEecCCCCHHHHHHHHHHHHh
Confidence 3689999999976656667777777764444443321 112 12333322 22345665544444455666666654
No 64
>PRK04435 hypothetical protein; Provisional
Probab=26.76 E-value=2e+02 Score=24.36 Aligned_cols=66 Identities=14% Similarity=0.286 Sum_probs=42.9
Q ss_pred Hhhhhccccc-ccCCCchHHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHH
Q 022704 154 RRARAAALNI-VPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 221 (293)
Q Consensus 154 r~~r~~a~NI-IP~~tGa~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~ 221 (293)
..+|.+...+ ++...|.-..+..+|-+.+..+.....++|.-....+.++++..... .++++++++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~--~~L~~Li~~ 131 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME--GDIDELLEK 131 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH--HHHHHHHHH
Confidence 4567676666 56667877777788888888887777788874445556666664332 245555443
No 65
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.85 E-value=2.2e+02 Score=19.35 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=32.9
Q ss_pred cCCCchHHHHHHHccccCCCeeEEEEecCC----CeeeEEEEEEEecCcCcHHHHHHHHHH
Q 022704 165 PTSTGAAKAVALVLPALKGKLNGIALRVPT----PNVSVVDLVVQVSKKTFAEEVNAAFRE 221 (293)
Q Consensus 165 P~~tGa~k~~~kvlPeL~gkv~~tavRVPV----~~gs~~dltv~~~k~v~~eei~~~l~~ 221 (293)
|...|.-..+..+|-+.+..|.....+-+- ..-..+.+++++......+++.+.|++
T Consensus 6 ~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 6 PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 445676677777787777788766655331 233445566666433344455555544
No 66
>PRK06270 homoserine dehydrogenase; Provisional
Probab=23.09 E-value=1.2e+02 Score=29.29 Aligned_cols=72 Identities=10% Similarity=0.118 Sum_probs=41.0
Q ss_pred CCCcEEEeccCCCCC-----HhhHHHHHHcCCCcEEecCCCCCCCCeEE--ecCCcCCCCCCCCeeeCCCcchhhhhhHH
Q 022704 47 ATPSISPGGTGVFVD-----REGAGKHIQAGAKKVLITAPGKGDIPTYV--VGVNADAYKPDEPIISNASCTTNCLAPFV 119 (293)
Q Consensus 47 ~~~DivlestG~~~s-----~~~a~~hl~aGakkVVIs~ps~~dvPlvV--pgVN~~~~~~~~~IISn~sCtTn~lap~l 119 (293)
..+|+|++||+.... .+++..++++|. -||++.- .|+-. .++... ..+.++.=--..+...-.|++
T Consensus 88 ~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVtaNK---~pla~~~~eL~~~--A~~~g~~~~~ea~v~~glPii 160 (341)
T PRK06270 88 VDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTSNK---GPLALAYKELKEL--AKKNGVRFRYEATVGGAMPII 160 (341)
T ss_pred cCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcCCc---HHHHhhHHHHHHH--HHHcCCEEEEeeeeeechhHH
Confidence 468999999987543 678889999997 5555321 11111 111110 011222112234555678999
Q ss_pred HHHhhh
Q 022704 120 KVLDQK 125 (293)
Q Consensus 120 k~L~~~ 125 (293)
+.|.+.
T Consensus 161 ~~l~~~ 166 (341)
T PRK06270 161 NLAKET 166 (341)
T ss_pred HHHHhh
Confidence 998875
No 67
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=22.60 E-value=64 Score=31.00 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=23.9
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
.++|+||||+|...+.+.+-.+++.|-.-+++.-+.
T Consensus 237 ~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 237 RGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 379999999996555566666666665444444443
No 68
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=22.58 E-value=7.2e+02 Score=24.15 Aligned_cols=32 Identities=9% Similarity=-0.104 Sum_probs=27.3
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEec
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLIT 79 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs 79 (293)
..+|+|+-|++.....+.+...+++|.- ||.+
T Consensus 59 ~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s 90 (324)
T TIGR01921 59 DDVDVLILCMGSATDIPEQAPYFAQFAN-TVDS 90 (324)
T ss_pred cCCCEEEEcCCCccCHHHHHHHHHcCCC-EEEC
Confidence 5799999999999999999999999973 4444
No 69
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=22.55 E-value=76 Score=24.59 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEecCcCcHHHHHHH-HHHcccccccCcc
Q 022704 202 LVVQVSKKTFAEEVNAA-FRESADNELKGIL 231 (293)
Q Consensus 202 ltv~~~k~v~~eei~~~-l~~a~~~~lkgil 231 (293)
+++++.+.+|+++|++. +++|...||--.|
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~Pl~~~L 32 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKMPLGQLL 32 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhCCHHHHh
Confidence 45667888999999985 4666656764444
No 70
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.90 E-value=1e+02 Score=28.10 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=26.9
Q ss_pred CcEEEeccCCCCCHhhHHHHHHcCCCcEEecC
Q 022704 49 PSISPGGTGVFVDREGAGKHIQAGAKKVLITA 80 (293)
Q Consensus 49 ~DivlestG~~~s~~~a~~hl~aGakkVVIs~ 80 (293)
+++=+...|...+.+.+.+.+++||.||||..
T Consensus 75 ~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt 106 (234)
T PRK13587 75 TTKDIEVGGGIRTKSQIMDYFAAGINYCIVGT 106 (234)
T ss_pred cCCeEEEcCCcCCHHHHHHHHHCCCCEEEECc
Confidence 34446778999999999999999999999943
No 71
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=20.90 E-value=95 Score=28.91 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=25.1
Q ss_pred CCCCcEEEeccCCCCCHhhHHHHHHcCC
Q 022704 46 TATPSISPGGTGVFVDREGAGKHIQAGA 73 (293)
Q Consensus 46 ~~~~DivlestG~~~s~~~a~~hl~aGa 73 (293)
...+|+|++|++.....+.+..++++|.
T Consensus 65 l~~~D~Vvi~tp~~~h~e~~~~aL~aGk 92 (271)
T PRK13302 65 ATHADIVVEAAPASVLRAIVEPVLAAGK 92 (271)
T ss_pred hcCCCEEEECCCcHHHHHHHHHHHHcCC
Confidence 3578999999999988999999999986
No 72
>PLN00106 malate dehydrogenase
Probab=20.71 E-value=1.3e+02 Score=28.97 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=45.9
Q ss_pred CCCCcEEEeccCCCCC----H------------hhHHHHHHcCCCcEEe--cCCCCCCCCeEEecC-CcCCCCCCCCeee
Q 022704 46 TATPSISPGGTGVFVD----R------------EGAGKHIQAGAKKVLI--TAPGKGDIPTYVVGV-NADAYKPDEPIIS 106 (293)
Q Consensus 46 ~~~~DivlestG~~~s----~------------~~a~~hl~aGakkVVI--s~ps~~dvPlvVpgV-N~~~~~~~~~IIS 106 (293)
+.++|+|+.++|.-.. + +.++...+.|.+.+|| |||.+...|.+.+-+ +...+. .++++.
T Consensus 84 l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p-~~~viG 162 (323)
T PLN00106 84 LKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYD-PKKLFG 162 (323)
T ss_pred cCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCC-cceEEE
Confidence 6899999999997443 2 1223444456555544 888743233332211 111122 357777
Q ss_pred CCCcchhhhhhHHHHHhhhcCccEEEE
Q 022704 107 NASCTTNCLAPFVKVLDQKFGIIKGTM 133 (293)
Q Consensus 107 n~sCtTn~lap~lk~L~~~fgI~~~~~ 133 (293)
... --.+.+-..|.+++|+.-..+
T Consensus 163 ~~~---LDs~Rl~~~lA~~lgv~~~~V 186 (323)
T PLN00106 163 VTT---LDVVRANTFVAEKKGLDPADV 186 (323)
T ss_pred Eec---chHHHHHHHHHHHhCCChhhe
Confidence 743 333455566778888874333
No 73
>PRK06392 homoserine dehydrogenase; Provisional
Probab=20.52 E-value=1.2e+02 Score=29.21 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=23.5
Q ss_pred CCCcEEEeccCCCC----CHhhHHHHHHcCCCcEEecCC
Q 022704 47 ATPSISPGGTGVFV----DREGAGKHIQAGAKKVLITAP 81 (293)
Q Consensus 47 ~~~DivlestG~~~----s~~~a~~hl~aGakkVVIs~p 81 (293)
...|+++|||+... ..++.+.++++|. -||++.
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~--hVVTaN 116 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGI--DVVTAN 116 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCC--EEEcCC
Confidence 35799999997532 2344588999998 667553
Done!