Query 022704
Match_columns 293
No_of_seqs 222 out of 1576
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:49:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dib_A GAPDH, glyceraldehyde 3 100.0 1.2E-99 4E-104 721.4 24.1 270 20-291 63-335 (345)
2 3doc_A Glyceraldehyde 3-phosph 100.0 2.1E-99 7E-104 718.1 24.4 270 20-291 63-334 (335)
3 3h9e_O Glyceraldehyde-3-phosph 100.0 5.3E-99 2E-103 718.0 25.7 269 20-291 66-338 (346)
4 3pym_A GAPDH 3, glyceraldehyde 100.0 7.9E-99 3E-103 713.5 26.0 268 20-290 61-331 (332)
5 3v1y_O PP38, glyceraldehyde-3- 100.0 2.7E-98 9E-103 711.0 25.2 266 23-291 68-336 (337)
6 3ids_C GAPDH, glyceraldehyde-3 100.0 8.8E-99 3E-103 718.5 21.6 271 19-291 73-353 (359)
7 1obf_O Glyceraldehyde 3-phosph 100.0 2.2E-97 8E-102 706.0 25.4 268 21-291 64-334 (335)
8 3hja_A GAPDH, glyceraldehyde-3 100.0 2.9E-98 1E-102 714.3 18.8 271 18-290 77-356 (356)
9 3lvf_P GAPDH 1, glyceraldehyde 100.0 5E-97 2E-101 702.2 21.7 268 20-293 63-338 (338)
10 2b4r_O Glyceraldehyde-3-phosph 100.0 7.4E-97 3E-101 704.2 23.0 269 20-290 71-344 (345)
11 2ep7_A GAPDH, glyceraldehyde-3 100.0 1.4E-95 5E-100 695.0 19.5 269 19-291 60-340 (342)
12 2g82_O GAPDH, glyceraldehyde-3 100.0 2.1E-91 7E-96 664.9 23.6 269 20-291 58-329 (331)
13 2d2i_A Glyceraldehyde 3-phosph 100.0 3.5E-89 1.2E-93 659.4 24.2 269 21-291 64-336 (380)
14 1rm4_O Glyceraldehyde 3-phosph 100.0 6.3E-89 2.1E-93 649.2 24.8 270 21-292 64-335 (337)
15 3b1j_A Glyceraldehyde 3-phosph 100.0 3.5E-88 1.2E-92 644.6 25.9 270 21-292 64-337 (339)
16 3cmc_O GAPDH, glyceraldehyde-3 100.0 2.3E-88 7.8E-93 644.7 24.2 270 20-291 60-332 (334)
17 1hdg_O Holo-D-glyceraldehyde-3 100.0 3E-87 1E-91 636.6 25.1 268 21-291 62-332 (332)
18 3cps_A Glyceraldehyde 3-phosph 100.0 2.6E-87 8.8E-92 641.7 22.6 270 20-291 77-352 (354)
19 2x5j_O E4PDH, D-erythrose-4-ph 100.0 2.5E-86 8.6E-91 631.8 22.5 270 20-291 64-336 (339)
20 1gad_O D-glyceraldehyde-3-phos 100.0 2.5E-86 8.5E-91 629.8 22.2 269 19-290 59-330 (330)
21 3e5r_O PP38, glyceraldehyde-3- 100.0 2.3E-85 7.8E-90 624.7 24.8 269 20-291 65-336 (337)
22 1u8f_O GAPDH, glyceraldehyde-3 100.0 7.6E-85 2.6E-89 620.3 22.7 269 20-291 63-334 (335)
23 2yv3_A Aspartate-semialdehyde 100.0 7.1E-46 2.4E-50 351.7 16.8 259 18-290 37-329 (331)
24 2yyy_A Glyceraldehyde-3-phosph 100.0 3.9E-47 1.3E-51 362.3 7.7 167 47-225 80-253 (343)
25 2hjs_A USG-1 protein homolog; 100.0 2.5E-45 8.4E-50 349.0 19.5 263 19-290 44-335 (340)
26 2r00_A Aspartate-semialdehyde 100.0 1.1E-44 3.7E-49 344.1 19.7 261 19-290 41-333 (336)
27 1t4b_A Aspartate-semialdehyde 100.0 4.1E-42 1.4E-46 330.3 7.6 201 19-223 39-299 (367)
28 3tz6_A Aspartate-semialdehyde 100.0 1.5E-38 5E-43 303.4 15.2 257 17-290 37-342 (344)
29 1cf2_P Protein (glyceraldehyde 100.0 3.1E-39 1.1E-43 306.8 9.2 201 47-274 77-285 (337)
30 3pwk_A Aspartate-semialdehyde 100.0 2.3E-38 7.7E-43 304.3 15.1 262 17-290 38-343 (366)
31 3uw3_A Aspartate-semialdehyde 100.0 2.1E-39 7.2E-44 312.6 5.9 256 19-289 42-375 (377)
32 3pzr_A Aspartate-semialdehyde 100.0 3.6E-39 1.2E-43 310.2 6.2 257 19-290 38-368 (370)
33 4dpk_A Malonyl-COA/succinyl-CO 100.0 4.4E-38 1.5E-42 301.5 8.5 269 3-291 31-354 (359)
34 4dpl_A Malonyl-COA/succinyl-CO 100.0 4.4E-38 1.5E-42 301.5 8.0 270 3-291 31-354 (359)
35 1b7g_O Protein (glyceraldehyde 100.0 7E-37 2.4E-41 290.9 7.2 165 47-224 76-245 (340)
36 1xyg_A Putative N-acetyl-gamma 100.0 1.8E-36 6.2E-41 290.0 8.2 252 18-290 51-345 (359)
37 2ep5_A 350AA long hypothetical 100.0 5.8E-36 2E-40 285.2 8.0 170 46-224 75-270 (350)
38 3hsk_A Aspartate-semialdehyde 100.0 5.2E-35 1.8E-39 282.3 11.6 196 18-225 55-301 (381)
39 3dr3_A N-acetyl-gamma-glutamyl 100.0 9.1E-35 3.1E-39 276.5 9.1 251 16-290 40-329 (337)
40 2czc_A Glyceraldehyde-3-phosph 100.0 2.6E-34 9E-39 271.9 11.6 164 47-227 78-246 (334)
41 2ozp_A N-acetyl-gamma-glutamyl 100.0 2.2E-34 7.5E-39 274.1 6.8 249 18-290 39-331 (345)
42 1ys4_A Aspartate-semialdehyde 100.0 2.1E-33 7.3E-38 267.6 11.2 168 48-224 83-276 (354)
43 2nqt_A N-acetyl-gamma-glutamyl 100.0 4.5E-31 1.5E-35 252.4 11.6 257 19-290 50-338 (352)
44 1vkn_A N-acetyl-gamma-glutamyl 99.9 1.8E-28 6.2E-33 234.4 4.0 261 3-290 37-337 (351)
45 1nvm_B Acetaldehyde dehydrogen 97.8 1.3E-05 4.6E-10 74.8 4.2 159 46-209 69-280 (312)
46 3ic5_A Putative saccharopine d 71.0 2.4 8.1E-05 31.5 2.6 34 46-79 67-100 (118)
47 1j5p_A Aspartate dehydrogenase 43.5 7.6 0.00026 35.0 1.3 36 40-76 53-88 (253)
48 1f06_A MESO-diaminopimelate D- 39.9 20 0.00068 32.5 3.5 35 47-82 57-91 (320)
49 2v1y_A Phosphatidylinositol-4, 36.4 39 0.0013 26.6 4.2 50 184-238 19-69 (108)
50 2dc1_A L-aspartate dehydrogena 33.7 19 0.00064 30.9 2.1 87 47-139 49-136 (236)
51 3cea_A MYO-inositol 2-dehydrog 32.1 33 0.0011 30.7 3.7 35 47-82 70-104 (346)
52 3kux_A Putative oxidoreductase 30.2 42 0.0014 30.3 4.0 35 47-82 66-100 (352)
53 1o9a_B FNBB, fibronectin bindi 29.8 8.1 0.00028 24.1 -0.6 17 260-276 17-33 (36)
54 3c8m_A Homoserine dehydrogenas 29.5 34 0.0012 31.4 3.2 31 47-79 85-119 (331)
55 3gdo_A Uncharacterized oxidore 28.8 44 0.0015 30.4 3.9 35 47-82 64-98 (358)
56 1r0k_A 1-deoxy-D-xylulose 5-ph 28.8 42 0.0014 31.9 3.9 31 49-80 94-124 (388)
57 2rbg_A Putative uncharacterize 27.4 16 0.00056 29.3 0.6 26 212-237 72-97 (126)
58 3i23_A Oxidoreductase, GFO/IDH 25.7 50 0.0017 29.9 3.7 35 47-82 64-98 (349)
59 3euw_A MYO-inositol dehydrogen 25.2 52 0.0018 29.5 3.7 35 47-82 64-98 (344)
60 3oqb_A Oxidoreductase; structu 24.5 71 0.0024 29.1 4.5 35 47-82 82-116 (383)
61 4hkt_A Inositol 2-dehydrogenas 23.6 59 0.002 29.0 3.7 35 47-82 62-96 (331)
62 3dqp_A Oxidoreductase YLBE; al 23.2 82 0.0028 25.7 4.3 34 46-79 61-104 (219)
63 3e9m_A Oxidoreductase, GFO/IDH 23.0 60 0.002 29.1 3.6 35 47-82 66-100 (330)
64 3db2_A Putative NADPH-dependen 22.9 65 0.0022 29.0 3.9 35 47-82 65-99 (354)
65 3mz0_A Inositol 2-dehydrogenas 22.7 62 0.0021 29.0 3.7 35 47-82 65-99 (344)
66 4ina_A Saccharopine dehydrogen 22.3 60 0.002 30.4 3.6 82 49-133 77-167 (405)
67 3mtj_A Homoserine dehydrogenas 22.1 66 0.0022 31.0 3.9 34 47-81 77-111 (444)
68 3ezy_A Dehydrogenase; structur 21.7 63 0.0021 29.0 3.5 35 47-82 63-97 (344)
69 1lc0_A Biliverdin reductase A; 21.6 51 0.0017 29.2 2.8 35 47-82 64-98 (294)
70 3ohs_X Trans-1,2-dihydrobenzen 21.6 62 0.0021 28.9 3.4 35 47-82 65-99 (334)
71 3e82_A Putative oxidoreductase 21.5 67 0.0023 29.3 3.7 35 47-82 66-100 (364)
72 3o9z_A Lipopolysaccaride biosy 21.5 68 0.0023 28.7 3.7 35 47-82 71-105 (312)
73 3oa2_A WBPB; oxidoreductase, s 21.3 67 0.0023 28.8 3.6 35 47-82 72-106 (318)
74 2ejw_A HDH, homoserine dehydro 21.3 50 0.0017 30.5 2.7 31 48-79 66-97 (332)
75 3c1a_A Putative oxidoreductase 21.3 62 0.0021 28.7 3.3 35 47-82 68-102 (315)
76 3ing_A Homoserine dehydrogenas 20.8 1.1E+02 0.0038 28.0 5.0 31 47-79 81-115 (325)
77 2glx_A 1,5-anhydro-D-fructose 20.6 72 0.0025 28.2 3.6 35 47-82 61-95 (332)
78 3e18_A Oxidoreductase; dehydro 20.5 67 0.0023 29.2 3.4 35 47-82 64-98 (359)
79 1zh8_A Oxidoreductase; TM0312, 20.2 69 0.0024 28.8 3.4 35 47-82 81-115 (340)
No 1
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}
Probab=100.00 E-value=1.2e-99 Score=721.37 Aligned_cols=270 Identities=52% Similarity=0.808 Sum_probs=249.1
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|++|.|+|++++| +++++++.++|. |+||||||||.|+++++|++|+++||||||||+|+++|+||||||||++.
T Consensus 63 ~~~~l~inGk~I~v--~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~ 140 (345)
T 4dib_A 63 FEDHLLVDGKMIRL--LNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQ 140 (345)
T ss_dssp CSSEEEETTEEEEE--ECCSCGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGG
T ss_pred cCCEEEECCEEEEE--eecCChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHH
Confidence 58899999999877 566778888888 99999999999999999999999999999999999768999999999999
Q ss_pred CCC-CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~-~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|++ +++||||||||||||+|++|+|||+|||++++||||||+|++|+++|+++++||++|++++||||++||++|+++|
T Consensus 141 ~~~~~~~IISNaSCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~kd~r~~r~aa~NIIP~~tGaakav~k 220 (345)
T 4dib_A 141 LDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAK 220 (345)
T ss_dssp CCTTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECC-------------CCTTSCTTTCCEEECCTHHHHHHH
T ss_pred cCcccCeEEECCchhhhhhHHHHHHHHHhcCeEEEEEEeeeeccCCceeccccccccccchhhhhceecCCCchHHHHhh
Confidence 987 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+||++|+|+||||++||++||+++++|++++|||+++|++|+||+|||||+|+|+|+||+||+||+||+|||+.+
T Consensus 221 VlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~As~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~ 300 (345)
T 4dib_A 221 VLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLS 300 (345)
T ss_dssp HCGGGTTTEEEEEEECCCSSEEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGG
T ss_pred hccccCCcEEEEEEEccCcccEEEEEEEEECCCCCHHHHHHHHHHhhcCcccceeeeEcCcEeeeecCCCCcchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|++++++++||++||||||||||||+||+.||+++
T Consensus 301 t~~~~~~~vk~~~WYDNE~Gys~r~~dl~~~~~~~ 335 (345)
T 4dib_A 301 TMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVDE 335 (345)
T ss_dssp CEEETTTEEEEEEEEETTHHHHHHHHHHHHHHHHH
T ss_pred cEEECCCEEEEEEEECCCcchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999874
No 2
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*
Probab=100.00 E-value=2.1e-99 Score=718.09 Aligned_cols=270 Identities=51% Similarity=0.733 Sum_probs=261.6
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|++|.|+|++++| .++++++.++|. |+||||||||.|+++++|++|+++||||||||+|+++++||||||||++.
T Consensus 63 ~~~~l~i~Gk~I~v--~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~~p~vV~gVN~~~ 140 (335)
T 3doc_A 63 AGDTIDVGYGPIKV--HAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDK 140 (335)
T ss_dssp CSSEEESSSSEEEE--ECCSSTTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTTCSEECCTTTTGGG
T ss_pred ecCEEEECCEEEEE--EeecccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCCCCCEEecccCHHH
Confidence 58999999999877 566778888887 99999999999999999999999999999999999766899999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 177 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kv 177 (293)
|+++++||||||||||||+|++|+|||+|||+++.||||||+||+|+++|+++++||++|++++||||++||++|+++|+
T Consensus 141 ~~~~~~IISNasCTTn~Lap~lk~L~d~fGI~~g~mTTvha~T~~q~~~D~p~kd~r~~r~aa~NiIP~~tGaakav~kV 220 (335)
T 3doc_A 141 LTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLV 220 (335)
T ss_dssp CCTTCCEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCCSSTTTTSCTTSSCEEEECCHHHHHHHH
T ss_pred hCccCCeEecCchhhhhhHHhHHHHHHHcCEEEEEEEeeeeccchhhhhcCccccccccccCcceEecCCCchHHHHHHh
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCCc
Q 022704 178 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLT 257 (293)
Q Consensus 178 lPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t 257 (293)
||+|+||++|+|+||||++||++||+++++|++++|||+++|++|+||+|||||+|+|+|+||+||+||+||+|||+.+|
T Consensus 221 lPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t 300 (335)
T 3doc_A 221 LPELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTDQT 300 (335)
T ss_dssp SGGGTTCEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGC
T ss_pred ccccCCCEEEEEEEeccccccceEEEEEECCCCCHHHHHHHHHHhhcCCcCCeeEEEcCCeEeeeeCCCCCccccCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 258 LVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 258 ~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
++++++++|+++||||||||||||+||+.||++.
T Consensus 301 ~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~ 334 (335)
T 3doc_A 301 KVMDGTMVRILSWYDNEWGFSSRMSDTAVALGKL 334 (335)
T ss_dssp EEETTTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCEEEEEEEEcCccchHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999864
No 3
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*
Probab=100.00 E-value=5.3e-99 Score=718.03 Aligned_cols=269 Identities=42% Similarity=0.707 Sum_probs=260.7
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
+|++|.|+|++++| .+++++++|+|. |+||||||||.|+++++|++|+++||||||||+|++ |+||||||||++.
T Consensus 66 ~~~~l~i~Gk~I~v--~~e~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~-d~plvV~gVN~~~ 142 (346)
T 3h9e_O 66 RNGQLVVDNHEISV--YQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP-DAPMFVMGVNEND 142 (346)
T ss_dssp ETTEEEETTEEEEE--ECCSSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCS-SSCBCCTTTTGGG
T ss_pred cCCEEEECCEEEEE--EecCChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC-CCCeeCcccCHHH
Confidence 68999999999877 466778889998 999999999999999999999999999999999995 6999999999999
Q ss_pred CCC-CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch-hhHHhhhhcccccccCCCchHHHHH
Q 022704 98 YKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVA 175 (293)
Q Consensus 98 ~~~-~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~-~d~r~~r~~a~NIIP~~tGa~k~~~ 175 (293)
|++ +++||||||||||||+|++|+|||+|||++++||||||+||+|+++|+++ ++||++|++++||||++||++|+++
T Consensus 143 ~~~~~~~IISNasCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~tQ~~~Dg~~~kd~r~~r~aa~NiIP~~tGaakavg 222 (346)
T 3h9e_O 143 YNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVT 222 (346)
T ss_dssp CCTTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTSGGGGSBTTTCCEEECCHHHHHHH
T ss_pred cCcccCCEEECCcchhhhHHHHHHHHHHHhCeeEEEEeeeeeccCccccccCCCCCCccccccceeeeecccCchHHhhh
Confidence 997 78999999999999999999999999999999999999999999999986 7999999999999999999999999
Q ss_pred HHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCC
Q 022704 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 255 (293)
Q Consensus 176 kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~ 255 (293)
||||+|+||++|+|+||||++||++||+++++|++++|||+++|++|+||+|||||+|+|+|+||+||+||+||+|||+.
T Consensus 223 kViPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~ 302 (346)
T 3h9e_O 223 KVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAK 302 (346)
T ss_dssp HHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETT
T ss_pred eechhhcCcEEEEEEEcccccceeEEEEEEECCcCCHHHHHHHHHHhccCccCCceeEEcCCeEeeccCCCCCceeEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 256 LTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 256 ~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
+|++++++++||++||||||||||||+||+.||+++
T Consensus 303 ~~~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~ 338 (346)
T 3h9e_O 303 AGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMFSR 338 (346)
T ss_dssp TCEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred ccEEecCCEEEEEEEECCCcchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999874
No 4
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*
Probab=100.00 E-value=7.9e-99 Score=713.46 Aligned_cols=268 Identities=46% Similarity=0.715 Sum_probs=259.4
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|++|.|+|++++| .++++++.++|. |+||||||||.|+++++|++|+++||||||||+|++ |+||||||||++.
T Consensus 61 ~~~~l~i~Gk~I~v--~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~-d~p~vV~gVN~~~ 137 (332)
T 3pym_A 61 DDKHIIVDGKKIAT--YQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSS-TAPMFVMGVNEEK 137 (332)
T ss_dssp CSSEEEETTEEEEE--ECCSSGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCS-SSCBCCTTTTGGG
T ss_pred cCCEEEECCEEEEE--EeecccccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCC-CCCeEeeccchhh
Confidence 58899999999877 566778888887 999999999999999999999999999999999995 5799999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch-hhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~-~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|+++++||||||||||||+|++|+|||+|||+++.||||||+|++|+++|+++ ++||++|++++||||++||++|+++|
T Consensus 138 ~~~~~~IISnasCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~Q~~vDg~~~kd~r~~r~aa~NiIP~~tGaakav~k 217 (332)
T 3pym_A 138 YTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGK 217 (332)
T ss_dssp CCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCTGGGSCGGGCCEEEECSHHHHHHH
T ss_pred cCccccEEecCcchhhhhHHHHHHHHHhcCeEEEEEEEEeeccccchhccCCCcccCccccchhhcccCCCCChHHHHHH
Confidence 99888999999999999999999999999999999999999999999999975 89999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+||++|+|+||||++||++||+++++|++++|||+++|++|+||+|||||+|+|+|+||+||+||+||+|||+.+
T Consensus 218 VlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~ 297 (332)
T 3pym_A 218 VLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASA 297 (332)
T ss_dssp HSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGG
T ss_pred hhhhhcCCEEEEEEEcCCCCcEeeEEEEEECCcCCHHHHHHHHHHhccCccCceeEEEcCCeEeeccCCCCcceEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~ 290 (293)
|++++++++||++||||||||||||+||+.||++
T Consensus 298 ~~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~ 331 (332)
T 3pym_A 298 GIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331 (332)
T ss_dssp CEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEEEEECCccchHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999975
No 5
>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O
Probab=100.00 E-value=2.7e-98 Score=710.99 Aligned_cols=266 Identities=47% Similarity=0.761 Sum_probs=258.3
Q ss_pred eeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCCCCC
Q 022704 23 KPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP 100 (293)
Q Consensus 23 ~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~~~~ 100 (293)
+|.|+|++++| +++++++.++|. |+||||||||.|+++++|++|+++||||||||+|++ |+||||||||++.|++
T Consensus 68 ~l~i~Gk~I~v--~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~-d~p~vV~gVN~~~~~~ 144 (337)
T 3v1y_O 68 TLLLGEKPVTV--FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK-DAPMFVCGVNEDKYTS 144 (337)
T ss_dssp EEEETTEEEEE--ECCSSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCS-SSCBCCTTTTGGGCCT
T ss_pred EEEECCEEEEE--EEecCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC-CCCeECCCCCHHHcCC
Confidence 89999999877 566778888888 999999999999999999999999999999999996 6899999999999998
Q ss_pred CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch-hhHHhhhhcccccccCCCchHHHHHHHcc
Q 022704 101 DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLP 179 (293)
Q Consensus 101 ~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~-~d~r~~r~~a~NIIP~~tGa~k~~~kvlP 179 (293)
+++||||||||||||+|++|+|||+|||+++.||||||+||+|+++|+++ ++||++|++++||||++||++|+++||||
T Consensus 145 ~~~IISnasCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~q~~~Dg~~~kd~r~~r~~a~NiIP~~tGaakav~kVlP 224 (337)
T 3v1y_O 145 DIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLP 224 (337)
T ss_dssp TCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCTTCGGGGSBGGGCCEEEECCHHHHHHHHSG
T ss_pred CCcEEecCchhhhhHHHHHHHHHHhcCeEEEEEeeeeeccchhhhccCCccccccccccccceeecCCCChHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999987 89999999999999999999999999999
Q ss_pred ccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCCcee
Q 022704 180 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLV 259 (293)
Q Consensus 180 eL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t~~ 259 (293)
+|+||++|+|+||||++||++||+++++|++++|||+++|++|+||+|||||+|+|+|+||+||+||+||+|||+.+|++
T Consensus 225 eL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~~~~ 304 (337)
T 3v1y_O 225 DLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIA 304 (337)
T ss_dssp GGTTSEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTBTTEEEECSCCCGGGGTTCCCSEEEETTTCEE
T ss_pred ccCCcEEEEEEEcCCCCcEEEEEEEEECCCCcHHHHHHHHHHhccCccCCeeEEEcCCEEeeccCCCCcceEEecccCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 260 MGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 260 ~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
++++++||++||||||||||||+||+.||+++
T Consensus 305 ~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~ 336 (337)
T 3v1y_O 305 LNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKT 336 (337)
T ss_dssp EETTEEEEEEEECTTHHHHHHHHHHHHHHHHC
T ss_pred ECCCEEEEEEEECCccchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999875
No 6
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Probab=100.00 E-value=8.8e-99 Score=718.54 Aligned_cols=271 Identities=44% Similarity=0.721 Sum_probs=261.7
Q ss_pred CCCceeEECCEEEEEEEee-cccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCc
Q 022704 19 SASLKPMLNQLVLMASLLM-ARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNA 95 (293)
Q Consensus 19 s~g~~~~f~g~~~~v~~~~-~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~ 95 (293)
..|++|.|+|++++| .+ +++++.++|. |+||||||||.|+++++|++|+++||||||||+|+++|+||||||||+
T Consensus 73 ~~~~~l~inGk~I~v--~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~d~p~vV~gVN~ 150 (359)
T 3ids_C 73 AKDDTLVVNGHRILC--VKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNH 150 (359)
T ss_dssp SSCCEEEETTEEEEE--CCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBSSCEECCTTTTG
T ss_pred CCCCEEEECCEEEEE--EEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCCeEEeccCH
Confidence 478999999999877 44 5677888888 999999999999999999999999999999999997789999999999
Q ss_pred CCCCC-CCCeeeCCCcchhhhhhHHHHH-hhhcCccEEEEeeecccccchhhhccch-hhHHhhhhcccccccCCCchHH
Q 022704 96 DAYKP-DEPIISNASCTTNCLAPFVKVL-DQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAK 172 (293)
Q Consensus 96 ~~~~~-~~~IISn~sCtTn~lap~lk~L-~~~fgI~~~~~TT~havsg~q~~~d~~~-~d~r~~r~~a~NIIP~~tGa~k 172 (293)
+.|++ +++||||||||||||+|++|+| ||+|||++++||||||+||+|+++|+++ ++||++|++++||||++||++|
T Consensus 151 ~~~~~~~~~IISNaSCTTn~Lap~lkvL~~d~fGI~~g~mTTvha~T~tQ~~vD~~~~kd~r~~r~aa~NiIP~~tGaak 230 (359)
T 3ids_C 151 HEYNPSEHHVVSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK 230 (359)
T ss_dssp GGCCTTTCSEEECCCHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBSSSCCCTTCTGGGSBGGGCCEEEECSHHH
T ss_pred HHcCCCCCCEEECCchHhhhHHHhhhhhhhccCCeEEEEEeeeeeccchhhhhcCCccccccccccCcceeEccCCchHH
Confidence 99997 7899999999999999999999 9999999999999999999999999988 7999999999999999999999
Q ss_pred HHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeE
Q 022704 173 AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTV 252 (293)
Q Consensus 173 ~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~ 252 (293)
+++|+||+|+||++|+||||||++||++||+++++|++++|||+++|++|+||+|||||+|+|+|+||+||+||+||+||
T Consensus 231 av~kVlPeL~gkltg~avRVPv~~vs~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~ 310 (359)
T 3ids_C 231 AVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIY 310 (359)
T ss_dssp HHHHHSGGGTTSEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEE
T ss_pred HHhhhchhhcCceEEEEEEcCCCCcEEEEEEEEECCCCCHHHHHHHHHHhccCccCCceeEecCCEEeeecCCCCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeC----CceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 253 DSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 253 d~~~t~~~~----~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|+.+|++++ ++++|+++||||||||||||+||+.||+++
T Consensus 311 d~~~t~~~~~~~~~~~vk~~~WYDNE~Gys~r~vdl~~~~~~~ 353 (359)
T 3ids_C 311 DSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASK 353 (359)
T ss_dssp EHHHHHHSSCTTCSSEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred ecccceeecccCCCCEEEEeEEECCCcchHHHHHHHHHHHHhh
Confidence 999999998 899999999999999999999999999864
No 7
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*
Probab=100.00 E-value=2.2e-97 Score=705.99 Aligned_cols=268 Identities=49% Similarity=0.730 Sum_probs=258.4
Q ss_pred CceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCC-eEEecCCcCC
Q 022704 21 SLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADA 97 (293)
Q Consensus 21 g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvP-lvVpgVN~~~ 97 (293)
|++|.|+|+.++| .++.+++.++|. ++||||||||.|+++++|+.|+++||||||||+|+++|+| |||||||++.
T Consensus 64 ~~~l~v~g~~i~v--~~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps~~dvp~~vV~gVN~~~ 141 (335)
T 1obf_O 64 GSYMVVNGDKIRV--DANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGT 141 (335)
T ss_dssp TTEEEETTEEEEE--ECCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGG
T ss_pred CCEEEECCEEEEE--EEcCCcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcccCCCCceEEccCCHHH
Confidence 8899999999877 445567788887 9999999999999999999999999999999999976799 9999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 177 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kv 177 (293)
|+++++||||||||||||+|++|+|||+|||++++||||||+||+|+++|+++++||++|++++||||++||++|+++||
T Consensus 142 ~~~~~~IISNasCTTn~Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~~~~d~r~~r~~a~NiIP~~tGaakav~kV 221 (335)
T 1obf_O 142 LKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDV 221 (335)
T ss_dssp CCTTCCEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCCSSTTTTSCTTTCCEEEECCHHHHHHHH
T ss_pred hCcCccEEeCCcHHHHHHHHHHHHHHHhcCeeEEEEEEEchhhhhhhhhcccccccccccchhhccccCCCcchHhHhhh
Confidence 98777999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCCc
Q 022704 178 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLT 257 (293)
Q Consensus 178 lPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t 257 (293)
||+|+||++|||+||||++||++||+++++|++++|||+++|++++||+|||||+|+|+|+||+||+||+||+|||+.+|
T Consensus 222 lP~L~gkltg~avRVPv~~~s~~dl~v~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d~~~~ 301 (335)
T 1obf_O 222 LPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLT 301 (335)
T ss_dssp CGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGC
T ss_pred ccccCCceEEEEEEeeccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCeecccCCceEeeeeCCCCccceeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 258 LVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 258 ~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
++ +++++|+++||||||||||||+||+.||+++
T Consensus 302 ~~-~~~~vk~~~WyDNE~gys~r~~dl~~~~~~~ 334 (335)
T 1obf_O 302 KV-SGRLVKVSSWYDNEWGFSNRMLDTTVALMSA 334 (335)
T ss_dssp EE-ETTEEEEEEEECTTHHHHHHHHHHHHHHHHC
T ss_pred cc-cCCEEEEEEEeCCCcchHhHHHHHHHHHhcc
Confidence 99 8999999999999999999999999999754
No 8
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Probab=100.00 E-value=2.9e-98 Score=714.34 Aligned_cols=271 Identities=49% Similarity=0.757 Sum_probs=260.8
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCC----HhhHHHHHH-cCCCcEEecCCCCCCCCeEE
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVD----REGAGKHIQ-AGAKKVLITAPGKGDIPTYV 90 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s----~~~a~~hl~-aGakkVVIs~ps~~dvPlvV 90 (293)
-++|++|.|+|++++| .++++++.++|. |+||||||||.|++ +++|++|++ +||||||||+|+++++||||
T Consensus 77 ~~~~~~l~i~Gk~I~v--~~~~dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~d~vp~vV 154 (356)
T 3hja_A 77 ESRDGAIVVDGREIKI--IAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIV 154 (356)
T ss_dssp EEETTEEEETTEEEEE--ECCSSGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCSSCCEECC
T ss_pred EEcCCEEEECCEEEEE--EEcCChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCCCCCCEEe
Confidence 3689999999999877 455667778886 99999999999999 999999999 99999999999976789999
Q ss_pred ecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCch
Q 022704 91 VGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA 170 (293)
Q Consensus 91 pgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa 170 (293)
||||++.|+++++||||||||||||+|++|+|||+|||+++.||||||+||+|+++|++++|||++|++++||||++||+
T Consensus 155 ~gVN~~~~~~~~~IISNaSCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~kd~r~~r~aa~NIIP~~tGa 234 (356)
T 3hja_A 155 LGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGA 234 (356)
T ss_dssp TTTSGGGCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBTTTSCEEEECCT
T ss_pred ccCCHHHcCcCccEEECCccchhhhhHhHHHHHHhcCeEEEEEEEEEecccccccccCcccccccccccccEEEcCCCch
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEEe-cCcCcHHHHHHHHHHccccc-ccCcccccCCCceeccCCCCCc
Q 022704 171 AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQV-SKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCSDV 248 (293)
Q Consensus 171 ~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~-~k~v~~eei~~~l~~a~~~~-lkgil~~te~~~VS~D~~~~~~ 248 (293)
+|+++|+||+|+||++|+|+||||++||++||++++ +|++++|||+++|++|+||+ |||||+|+|+|+||+||+||+|
T Consensus 235 akav~kVlPeL~gkltg~avRVPv~~~s~~dlt~~l~ek~~t~eeI~~~lk~Aa~g~~lkgil~yte~~~VS~Df~~~~~ 314 (356)
T 3hja_A 235 AKAVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSH 314 (356)
T ss_dssp TTTHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESCTTCCHHHHHHHHHHHHHSTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred HHHHHHhccccCCcEEEEEEEcCCCccEeEEEEEEEccCCCCHHHHHHHHHHHhcCchhccccceecCCeEeeeccCCCC
Confidence 999999999999999999999999999999999999 99999999999999999999 9999999999999999999999
Q ss_pred eeeEeCCCceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhc
Q 022704 249 SSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290 (293)
Q Consensus 249 s~i~d~~~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~ 290 (293)
|+|||+.+|++++++++||++||||||||||||+||+.||++
T Consensus 315 ssi~d~~~t~~~~~~~vk~~~WYDNE~Gys~r~vdl~~~~~~ 356 (356)
T 3hja_A 315 SSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 356 (356)
T ss_dssp SEEEEGGGCEECSTTEEEEEEEECTTHHHHHHHHHHHHHHC-
T ss_pred ceEEcCcCCEEEcCCEEEEEEEECCccchHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999864
No 9
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*
Probab=100.00 E-value=5e-97 Score=702.17 Aligned_cols=268 Identities=41% Similarity=0.592 Sum_probs=258.3
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|++|.|+|++++| +++++++.++|. |+||||||||.|+++++|++|+++||||||||+|+++|+||||||||++.
T Consensus 63 ~~~~l~inGk~I~v--~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~ 140 (338)
T 3lvf_P 63 VDGGFRVNGKEVKS--FSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQE 140 (338)
T ss_dssp ETTEEEETTEEEEE--ECCSCGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCEECCTTTTGGG
T ss_pred cCCEEEECCEEEEE--EEecccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCCCCCEEeccCCHHH
Confidence 47899999999877 566778888887 99999999999999999999999999999999999778999999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchh--hHHhhhhcccccccCCCchHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR--DLRRARAAALNIVPTSTGAAKAVA 175 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~--d~r~~r~~a~NIIP~~tGa~k~~~ 175 (293)
|+++++||||||||||||+|++|+|||+|||++++||||||+||+|+++|++++ +||++|++++||||++||++|+++
T Consensus 141 ~~~~~~IISNasCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~q~~~D~~~~k~d~r~~r~aa~NiIP~~tGaakav~ 220 (338)
T 3lvf_P 141 LDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIG 220 (338)
T ss_dssp CCSCCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCCTTTTSCGGGCCEEEECSTTTTGG
T ss_pred cCccCCeEecCchhhhhhHHHHHHHHHhcCEEEEEEeeeccccchhhhhcCCccccccccchhhhceEEeCCCchHHHHh
Confidence 998889999999999999999999999999999999999999999999999886 999999999999999999999999
Q ss_pred HHccccCCCeeEEEEecCCCeeeEEEEEEEecC-cCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeC
Q 022704 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSK-KTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 254 (293)
Q Consensus 176 kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k-~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~ 254 (293)
|+||+|+||++|||+||||++||++||+++++| ++++|||+++|++|+||+ |+|+|+|+||+||+||+||+|||+
T Consensus 221 kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~~t~eei~~~lk~As~g~----l~yte~~~VS~Df~~~~~ssi~d~ 296 (338)
T 3lvf_P 221 KVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDA 296 (338)
T ss_dssp GTCGGGTTSEEEEEEEESCSSCEEEEEEEEESSSSCCHHHHHHHHHHTCCSS----EEEECSCCCGGGGTTCCCSEEEEG
T ss_pred hhchhhcCcEEEEEEEcCCCceEEEEEEEEEccCCCCHHHHHHHHHHhhcCC----cccccCCEEeEeeCCCCcceEEec
Confidence 999999999999999999999999999999999 999999999999999987 999999999999999999999999
Q ss_pred CCceeeC---CceEEEEEEeCCCCchhhhHHHHHHHHhccCC
Q 022704 255 SLTLVMG---DDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 293 (293)
Q Consensus 255 ~~t~~~~---~~~vkl~~WyDNE~gys~r~~dl~~~~~~~~~ 293 (293)
.+|++++ ++++||++||||||||||||+||+.||+++.|
T Consensus 297 ~~t~~~~~~~~~~vk~~~WYDNE~gys~r~~dl~~~~~~~~~ 338 (338)
T 3lvf_P 297 TQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK 338 (338)
T ss_dssp GGCEEEEETTEEEEEEEEEECTTHHHHHHHHHHHHHHHHHTC
T ss_pred ccceEecCCCCCEEEEEEEECCccchHHHHHHHHHHHHhhcC
Confidence 9999998 89999999999999999999999999998765
No 10
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Probab=100.00 E-value=7.4e-97 Score=704.17 Aligned_cols=269 Identities=43% Similarity=0.709 Sum_probs=258.7
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|++|.|+|++++| .++.+++.++|. ++||||||||.|+++++|+.|+++||||||||+|+++|+||||||||++.
T Consensus 71 ~~~~l~v~Gk~i~v--~~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~~dvplvV~gVN~~~ 148 (345)
T 2b4r_O 71 ADGFLLIGEKKVSV--FAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQ 148 (345)
T ss_dssp ETTEEEESSCEEEE--ECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGG
T ss_pred cCCEEEECCEEEEE--EEcCCcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHH
Confidence 38899999999877 444567788888 99999999999999999999999999999999999767999999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch---hhHHhhhhcccccccCCCchHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH---RDLRRARAAALNIVPTSTGAAKAV 174 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~---~d~r~~r~~a~NIIP~~tGa~k~~ 174 (293)
|++.++||||||||||||+|++|+|||+|||+++.||||||+||+|+++|+++ ++||++|++++||||++||++|++
T Consensus 149 ~~~~~~IISNasCTTn~Lap~lk~L~d~fGI~~~~mTTvhA~T~~q~~~d~~~~~~~d~r~~r~~a~NiIP~~tGaakav 228 (345)
T 2b4r_O 149 YDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAV 228 (345)
T ss_dssp CCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSCSSSCCCGGGCCGGGGSCTTTCCEEEECCHHHHH
T ss_pred hCCCCCEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEeehhhchhhhhcccccccCCCccccchhhccCcCCCchHHHH
Confidence 98777999999999999999999999999999999999999999999999987 789999999999999999999999
Q ss_pred HHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeC
Q 022704 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 254 (293)
Q Consensus 175 ~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~ 254 (293)
+||||+|+|||+|+|+||||++||++||+++|+|++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||+
T Consensus 229 ~kVlP~L~gkltg~avRVPv~~gs~~dltv~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~VS~d~~~~~~ssi~d~ 308 (345)
T 2b4r_O 229 GKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDM 308 (345)
T ss_dssp HHHSGGGTTTEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEE
T ss_pred HHhhhhcCCcEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCcccccCCCceEEeeCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhc
Q 022704 255 SLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290 (293)
Q Consensus 255 ~~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~ 290 (293)
.+|++++++++|+++||||||||||||+||+.||++
T Consensus 309 ~~~~~~~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 344 (345)
T 2b4r_O 309 KAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITT 344 (345)
T ss_dssp EEEEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHC
T ss_pred ccCeEecCCEEEEEEEeCCCcchHhHHHHHHHHHhc
Confidence 999999889999999999999999999999999964
No 11
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}
Probab=100.00 E-value=1.4e-95 Score=695.03 Aligned_cols=269 Identities=51% Similarity=0.795 Sum_probs=258.2
Q ss_pred CCCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCC-eEEecCCc
Q 022704 19 SASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNA 95 (293)
Q Consensus 19 s~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvP-lvVpgVN~ 95 (293)
..|++|.|+|+.++| .++.+++.++|. ++||||||||.|+++++|+.|+++||||||||+|++ |+| |||||||+
T Consensus 60 ~~~~~l~v~Gk~i~v--~~~~dp~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~-dvp~~vV~gVN~ 136 (342)
T 2ep7_A 60 AKDDSIVVDGKEIKV--FAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAK-NPDITVVLGVNE 136 (342)
T ss_dssp ECSSEEEETTEEEEE--ECCSSGGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCB-SCSEECCTTTSG
T ss_pred EcCCEEEECCEEEEE--EEcCChhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCC-CCCceEEcCcCH
Confidence 347899999999877 455667788888 999999999999999999999999999999999995 699 99999999
Q ss_pred CCCCC-CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHH
Q 022704 96 DAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 174 (293)
Q Consensus 96 ~~~~~-~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~ 174 (293)
+.|++ .++||||||||||||+|++|+|||+|||+++.||||||+||+|+++|+++++||++|++++||||++||++|++
T Consensus 137 ~~~~~~~~~IISNasCTTn~Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~p~~d~r~~r~~a~NiIP~~tGaakav 216 (342)
T 2ep7_A 137 EKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAI 216 (342)
T ss_dssp GGCCTTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBGGGCCEEECCCTTGGG
T ss_pred HHhcccCCeEEECCChHHHHHHHHHHHHHHHcCeeEEEEEEEeecccchhhhcCCcchhhhhhhHhhCccCCCCChHHHH
Confidence 99987 57899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccCCCeeEEEEecCCCeeeEEEEEEEecC-cCcHHHHHHHHHHcccc-------cccCcccccCCCceeccCCCC
Q 022704 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSK-KTFAEEVNAAFRESADN-------ELKGILSVCDEPLVSVDFRCS 246 (293)
Q Consensus 175 ~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k-~v~~eei~~~l~~a~~~-------~lkgil~~te~~~VS~D~~~~ 246 (293)
+||||+|+||++++|+||||++||++||+++++| ++++|||+++|++++|| +|||||+|+|+|+||+||+||
T Consensus 217 ~kVlP~L~gkltg~avRVPv~~~s~~dltv~lek~~~t~eei~~~lk~a~~~~~~~~~~~lkgil~y~~~~~vS~d~~~~ 296 (342)
T 2ep7_A 217 GEVIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGN 296 (342)
T ss_dssp GGTSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCSCHHHHHHHHHHHHHHHHTSCCGGGTTSEEEECSCCCGGGGTTC
T ss_pred HHhhhccCCCEEEEEEEecccceEEEEEEEEEcCCCCCHHHHHHHHHHHhcCCcccccccccccccccCCCeEeeeECCC
Confidence 9999999999999999999999999999999999 99999999999999999 999999999999999999999
Q ss_pred CceeeEeCCCceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 247 DVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 247 ~~s~i~d~~~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
+||+|||+.+|+++ ++++|+++||||||||||||+||+.||++.
T Consensus 297 ~~ssi~d~~~~~~~-~~~vk~~~wyDNE~gys~r~~dl~~~~~~~ 340 (342)
T 2ep7_A 297 PHSAIFDAPLTQVI-DNLVHIAAWYDNEWGYSCRLRDLVIYLAER 340 (342)
T ss_dssp CCSEEEEGGGCEEE-TTEEEEEEEECTTHHHHHHHHHHHHHHHHC
T ss_pred Cccceecccccccc-CCEEEEEEEECCCccchhHHHHHHHHHHhc
Confidence 99999999999999 789999999999999999999999999865
No 12
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*
Probab=100.00 E-value=2.1e-91 Score=664.95 Aligned_cols=269 Identities=51% Similarity=0.769 Sum_probs=256.3
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.++++.|+|+.+.| .++.+++.++|. ++|+||||||.|++++++++|+++||||||||+|+++++|++|||||++.
T Consensus 58 ~~~~l~v~g~~i~v--~~~~dp~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~d~~p~vV~gVN~~~ 135 (331)
T 2g82_O 58 DDQYLYVDGKAIRA--TAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEA 135 (331)
T ss_dssp CSSEEEETTEEEEE--ECCSSGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGG
T ss_pred cCCEEEECCEEEEE--EecCChhhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCcCCCCEEeeccCHHH
Confidence 35789999999877 334466667787 89999999999999999999999999999999999756899999999999
Q ss_pred CCC-CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~-~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|++ .++||||||||||||+|++||||++|||+++.||||||+||+|+++|++++|||++|++++||||+++|++|+++|
T Consensus 136 ~~~~~~~IIsnasCtTn~lap~lk~L~~~fgI~~~~mtTvha~Tg~q~~~d~~~~d~r~~r~~a~NiIP~~tGaakav~k 215 (331)
T 2g82_O 136 YDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATAL 215 (331)
T ss_dssp CCTTTCCEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBGGGCCEEECCCHHHHHTT
T ss_pred hCcCCCCEEECCChHHHHHHHHHHHHHHhcCccEEEEEEEeecccccchhccccccccccchhhhCccccCCCchhhhhh
Confidence 986 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
|||+|+||++++|+||||++||+++++++++|++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||+.+
T Consensus 216 Ilp~L~gkl~g~a~RVPv~~gs~~dl~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~ 295 (331)
T 2g82_O 216 VLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKL 295 (331)
T ss_dssp TCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGG
T ss_pred hHHhcCCCEEEEEEEeCCCCEEEEEEEEEECCCCCHHHHHHHHHHhhcCccCCccCCCCCCeeeeeeCCCCccceecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|+++ ++++|+++||||||||||||+||+.||+++
T Consensus 296 ~~~~-~~~~k~~~wydne~gys~r~~d~~~~~~~~ 329 (331)
T 2g82_O 296 TKAL-GNMVKVFAWYDNEWGYANRVADLVELVLRK 329 (331)
T ss_dssp CEEE-TTEEEEEEEECTTHHHHHHHHHHHHHHHHH
T ss_pred cccc-CCEEEEEEEECCCchhHHHHHHHHHHHHhc
Confidence 9999 789999999999999999999999999764
No 13
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A
Probab=100.00 E-value=3.5e-89 Score=659.38 Aligned_cols=269 Identities=66% Similarity=0.933 Sum_probs=256.6
Q ss_pred CceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCC-eEEecCCcCC
Q 022704 21 SLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADA 97 (293)
Q Consensus 21 g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvP-lvVpgVN~~~ 97 (293)
|++|.++|+.+.+ +++.+++.+.|. ++|+||||||.|++++++++|+++||||||||+|+++++| ++|||||++.
T Consensus 64 ~~~l~v~g~~i~v--~~~~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~d~~p~~~V~GVN~e~ 141 (380)
T 2d2i_A 64 ENSITVNGKTMKI--VCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSE 141 (380)
T ss_dssp TTEEEETTEEEEE--ECCSCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGG
T ss_pred CCeEEECCeEEEE--EecCChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCCCCCCceEEcccCHHH
Confidence 5678899998766 455566677775 8999999999999999999999999999999999975578 9999999999
Q ss_pred CCC-CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~-~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|++ .++||||||||||||+|++|+||++|||+++.||||||+||+|+++|+++++||++|++++||||++||++++++|
T Consensus 142 ~~~~~~~IVSNasCtTn~lap~lk~L~d~fgI~~g~mTTvha~Tg~q~~vD~~~~d~r~gR~aa~NiIP~~Tgaakav~k 221 (380)
T 2d2i_A 142 YRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVAL 221 (380)
T ss_dssp CCTTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCSSTTTTSCGGGCCEEEECCHHHHHHH
T ss_pred hcccCCcEEECCchHHHHHHHHHHHHHHhcCeeEEEEEEEeeccccchhhccchhhhhhcchHhhCeEeccCchHHHHHh
Confidence 987 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||+.+
T Consensus 222 vlPeL~gkl~g~avRVPt~~gs~~dlt~~l~k~~t~eeI~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d~~~ 301 (380)
T 2d2i_A 222 VIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSL 301 (380)
T ss_dssp HCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGG
T ss_pred hhHhhhCcEEEEEEEeccCCEEEEEEEEEECCcCCHHHHHHHHHHHhhCCCCCccCCcCCCeeeeeeCCCCcceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|++++++++||++||||||||||||+||+.||++.
T Consensus 302 ~~~~~~~~vk~~~wyDNe~gys~r~~d~~~~~~~~ 336 (380)
T 2d2i_A 302 TLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARK 336 (380)
T ss_dssp CEEETTTEEEEEEEECTTHHHHHHHHHHHHHHHTT
T ss_pred CceecCCEEEEEEEECCCcchHhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999875
No 14
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*
Probab=100.00 E-value=6.3e-89 Score=649.20 Aligned_cols=270 Identities=83% Similarity=1.196 Sum_probs=257.4
Q ss_pred CceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCCC
Q 022704 21 SLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY 98 (293)
Q Consensus 21 g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~~ 98 (293)
+++|.++|+.+.+ +++.+++..+|. ++|+||||||.|++++++++|+++|||+|++|+|+.+|+|++|||||++.|
T Consensus 64 ~~~l~v~g~~i~v--~~~~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r~d~p~~V~GVN~~~~ 141 (337)
T 1rm4_O 64 DSAISVDGKVIKV--VSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGY 141 (337)
T ss_dssp TSEEEETTEEEEE--ECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCCBCCTTTTGGGC
T ss_pred CCeEEECCeEEEE--EecCChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCcccCCCCeEeecCCHHHh
Confidence 6678899999876 454556666788 999999999999999999999999999999999996558999999999999
Q ss_pred CCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHHHc
Q 022704 99 KPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVL 178 (293)
Q Consensus 99 ~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kvl 178 (293)
++.++||||||||||||+|++|+||++|||+++.||||||+||+|+++|++|++||++|++++||||++||++++++|+|
T Consensus 142 ~~~~~IIsNasCtTn~lap~lk~L~~~fgI~~~~mtTvha~Tgaq~l~d~~~~~~r~~r~~a~NiiP~~tgaakav~kvl 221 (337)
T 1rm4_O 142 THADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVL 221 (337)
T ss_dssp CTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCSSTTTTSCTTTCCEEECCCHHHHHHHHC
T ss_pred CCCCeEEECCChHHHHHHHHHHHHHHhcCeeEEEEEEEEecCCccchhhcchhhhccchhhhcCcccccchhhHHHHhhh
Confidence 86679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCCce
Q 022704 179 PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTL 258 (293)
Q Consensus 179 PeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t~ 258 (293)
|+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||+.+|+
T Consensus 222 Pel~gkl~~~a~RVP~~~gs~~dl~~~l~k~~t~eei~~~lk~a~~~~lkgil~y~~~~~vs~d~~~~~~s~i~d~~~~~ 301 (337)
T 1rm4_O 222 PNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTM 301 (337)
T ss_dssp GGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCE
T ss_pred hhhcCcEEEEEEEecCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCcCceecCcCCCeeecccCCCCcccccchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCceEEEEEEeCCCCchhhhHHHHHHHHhccC
Q 022704 259 VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 292 (293)
Q Consensus 259 ~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~~ 292 (293)
+++++++|+++||||||||||||+||+.||++..
T Consensus 302 ~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~~ 335 (337)
T 1rm4_O 302 VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 335 (337)
T ss_dssp EETTTEEEEEEEECTTHHHHHHHHHHHHHHHHTC
T ss_pred eecCCEEEEEEEECCCccchhhHHHHHHHHhhhc
Confidence 9999999999999999999999999999998753
No 15
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Probab=100.00 E-value=3.5e-88 Score=644.62 Aligned_cols=270 Identities=66% Similarity=0.955 Sum_probs=256.9
Q ss_pred CceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCC-eEEecCCcCC
Q 022704 21 SLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADA 97 (293)
Q Consensus 21 g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvP-lvVpgVN~~~ 97 (293)
|++|.++|+.+.+ .++.+++.+.|. ++|+||||||.|++++++++|+++||||||||+|+++++| ++|||||++.
T Consensus 64 ~~~l~v~g~~i~v--~~~~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~~~~p~~~V~gVN~~~ 141 (339)
T 3b1j_A 64 ENSITVNGKTMKI--VCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSE 141 (339)
T ss_dssp TTEEEETTEEEEE--ECCSCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGG
T ss_pred CCeeeecCceEEE--EecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCCCCCCeeEEcccCHHH
Confidence 5678899998766 444566677775 8999999999999999999999999999999999975588 9999999999
Q ss_pred CCC-CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~-~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|++ .++||||||||||||+|++|+||++|||+++.|||||++||+|+++|++|++||++|++++||||++||++++++|
T Consensus 142 ~~~~~~~IISnasCtTn~lap~lk~L~~~fgI~~~~~tTvha~Tg~q~~vd~~~~d~r~~r~a~~NiiP~~tgaakav~k 221 (339)
T 3b1j_A 142 YRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVAL 221 (339)
T ss_dssp CCTTTCSEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCCCSSTTTTSCTTSCCEEEECSHHHHHHH
T ss_pred hCcCCCeEEECCcchhhHHHHHHHHHHHhCCeeEEEEEEEEeecCCchhcccchhhhhccccHHHceEcccCchHHHHHH
Confidence 987 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
|||+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+|+|||+|||+.+
T Consensus 222 VlpeL~gkl~g~a~rVP~~~g~~~dl~v~l~k~~t~eeI~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~ 301 (339)
T 3b1j_A 222 VIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSL 301 (339)
T ss_dssp HCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHSTTBTTEEEECSCCCGGGGTTCCSSEEEEGGG
T ss_pred HhHhhcCcEEEEEEEeccCCEEEEEEEEEEcCcCCHHHHHHHHHHhhcCCCCCccCccCCceeehhcCCCCCceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhccC
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 292 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~~ 292 (293)
|++++++++|+++||||||||||||+||+.||++.+
T Consensus 302 ~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~~ 337 (339)
T 3b1j_A 302 TLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKW 337 (339)
T ss_dssp CEEETTTEEEEEEEECTTHHHHHHHHHHHHHHHHTC
T ss_pred CceecCCEEEEEEEeCCCcchHhHHHHHHHHHhhhc
Confidence 999998999999999999999999999999998753
No 16
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Probab=100.00 E-value=2.3e-88 Score=644.74 Aligned_cols=270 Identities=57% Similarity=0.859 Sum_probs=257.0
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|++|.|+|+.+.+ .++.+++.++|. ++|+||||||.|++++++++|+++||||||||+|+++++|++|||||++.
T Consensus 60 ~~~~l~v~g~~i~v--~~~~dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~d~~p~~V~eVN~~~ 137 (334)
T 3cmc_O 60 NGNNLVVNGKEIIV--KAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDK 137 (334)
T ss_dssp ETTEEEETTEEEEE--ECCSSGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGG
T ss_pred ccCcEEECCEEEEE--EecCChhhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCccCCCEeccccCHHH
Confidence 45788999998777 334566778787 99999999999999999999999999999999999755899999999999
Q ss_pred CCC-CCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~-~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|++ .++||||||||||||+|+||||+++|||+++.||||||+||+|+++|++++++|++|++++||||+++|+++|++|
T Consensus 138 i~~~~~~IIsNpsCttn~lap~lkpL~~~~gI~~~~mtTvha~Sg~q~~~d~~~~~~r~~r~~a~NiiP~~tg~a~ei~k 217 (334)
T 3cmc_O 138 YDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVAL 217 (334)
T ss_dssp CCTTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBTTTCCEEEECSHHHHHHH
T ss_pred hCccCCeEEECCChHHHHHHHHHHHHHHhcCceeeeEEEEEeccchhhhccccccccccchhhhhCEEeeccCcccchhh
Confidence 986 3789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||+.+
T Consensus 218 vlp~l~gkl~~~a~rVP~~~gs~~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~ 297 (334)
T 3cmc_O 218 VLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297 (334)
T ss_dssp HCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGG
T ss_pred hChhhcCcEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCCcccCCCCCEeeeeeCCCCccceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|++++++++|+++||||||||||||+||+.||++.
T Consensus 298 ~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 332 (334)
T 3cmc_O 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 332 (334)
T ss_dssp CEEETTTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred CeEecCCEEEEEEEeCCCchhhhHHHHHHHHHHhc
Confidence 99999899999999999999999999999999764
No 17
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=3e-87 Score=636.58 Aligned_cols=268 Identities=51% Similarity=0.774 Sum_probs=255.8
Q ss_pred CceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCC-eEEecCCcCC
Q 022704 21 SLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADA 97 (293)
Q Consensus 21 g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvP-lvVpgVN~~~ 97 (293)
|++|.++|+.+.+ .++.+++.++|. ++|+||||||.|++++++++|+++||||||||+|++ |+| ++|||||++.
T Consensus 62 ~~~l~v~g~~i~v--~~~~dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~-d~p~~~V~eVN~~~ 138 (332)
T 1hdg_O 62 ENSLIVDGKEIKV--FAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK-GEDITVVIGCNEDQ 138 (332)
T ss_dssp SSEEEETTEEEEE--ECCSSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB-SCSEECCTTTTGGG
T ss_pred CCEEEECCeEEEE--EecCChHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCC-CCCceEEeccCHHH
Confidence 6688899998766 334566777787 999999999999999999999999999999999986 689 9999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 177 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kv 177 (293)
|++.++||||||||||||+|+||||+++|||+++.||||||+||+|+++|++++++|++|++++||||+++|+++|++|+
T Consensus 139 i~~~~~iIsNpsCttn~lap~lkpL~~~~gI~~~~~ttvha~Sg~q~~~d~~~~~~~~~r~~a~NiiP~~tg~a~ei~kv 218 (332)
T 1hdg_O 139 LKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALV 218 (332)
T ss_dssp CCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCSSTTTTSBGGGCCEEECCTHHHHHHHH
T ss_pred hCCCCcEEECCccHHHHHHHHHHHHHHhcCeeEeEEEEEEeccchhhhhcCcccccccchhHhhCcccccCCcccchhhh
Confidence 98657899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCCc
Q 022704 178 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLT 257 (293)
Q Consensus 178 lPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t 257 (293)
||+|+|||+++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||+.+|
T Consensus 219 Lp~l~gkl~~~a~rVP~~~g~l~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~ 298 (332)
T 1hdg_O 219 VPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATIT 298 (332)
T ss_dssp CGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTC
T ss_pred CccccCCEEEEeEEccccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCcccccCCCeeeeeeCCCCccceeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 258 LVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 258 ~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
++++++++|+++||||||||||||+||+.||+++
T Consensus 299 ~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 332 (332)
T 1hdg_O 299 NVIGGKLVKVASWYDNEYGYSNRVVDTLELLLKM 332 (332)
T ss_dssp EEETTTEEEEEEEECTTHHHHHHHHHHHHHGGGC
T ss_pred eEecCCEEEEEEEeCCCccchhHHHHHHHHHhcC
Confidence 9999899999999999999999999999999764
No 18
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*
Probab=100.00 E-value=2.6e-87 Score=641.66 Aligned_cols=270 Identities=46% Similarity=0.726 Sum_probs=255.0
Q ss_pred CCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|+++.++|+.+.+ +++.+++.++| .++|+||||||.|++++++++|+++||||||||+|+++++|++|||||++.
T Consensus 77 ~~~~l~v~g~~i~v--~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~padd~~p~~V~GVN~~~ 154 (354)
T 3cps_A 77 SGKDLCINGKVVKV--FQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTE 154 (354)
T ss_dssp CC-CEEETTEEEEE--ECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSCCCBCCTTTTGGG
T ss_pred eCCEEEECCeEEEE--EecCChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCCCCCCEEEeccCHHH
Confidence 46779999999866 44456666667 799999999999999999999999999999999999766899999999999
Q ss_pred CCCC-CCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch---hhHHhhhhcccccccCCCchHHH
Q 022704 98 YKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH---RDLRRARAAALNIVPTSTGAAKA 173 (293)
Q Consensus 98 ~~~~-~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~---~d~r~~r~~a~NIIP~~tGa~k~ 173 (293)
|++. .+||||||||||||+|+||||+++|||+++.||||||+||+|+++|+++ ++||++|++++||||+++|++++
T Consensus 155 ~~~~~~~IISNpsCtTn~lap~lkpL~~~~gI~~g~mtTvha~Tg~q~~vd~~~~~~k~~r~~r~aa~NiiP~~tG~ake 234 (354)
T 3cps_A 155 YDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKA 234 (354)
T ss_dssp CCTTTCSEEECCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCCCCC--CCGGGSCTTSCCEEEECCHHHH
T ss_pred hCcCCCcEEECCCcHHHHHHHHHHHHHHhCCeeEEEEEEEecccccchhhhccchhccccccccchhccEEecCcCHHHH
Confidence 9864 7899999999999999999999999999999999999999999999998 78999999999999999999999
Q ss_pred HHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEe
Q 022704 174 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVD 253 (293)
Q Consensus 174 ~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d 253 (293)
++|+||+|+|||+++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||
T Consensus 235 i~kvlp~l~gkl~~~a~rVP~~~gs~~dl~~~l~k~~t~eeI~~~~k~a~~~~lkgil~y~~~~~vs~d~~~~~~s~~~d 314 (354)
T 3cps_A 235 VGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFD 314 (354)
T ss_dssp HHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEE
T ss_pred HHHHHHhcCCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCCCCccCccCCCeeeEEEcCCCcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 254 SSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 254 ~~~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
+.+|++++++++|+++||||||||||||+||+.||++.
T Consensus 315 ~~~~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 352 (354)
T 3cps_A 315 KNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASR 352 (354)
T ss_dssp GGGCEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred cccCeEecCCEEEEEEEECCCcchHhHHHHHHHHHHhc
Confidence 99999998899999999999999999999999999764
No 19
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*
Probab=100.00 E-value=2.5e-86 Score=631.80 Aligned_cols=270 Identities=40% Similarity=0.629 Sum_probs=245.5
Q ss_pred CCceeEECCEEEEEEEeecccccccCCC--CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCC-eEEecCCcC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLTA--TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNAD 96 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~~--~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvP-lvVpgVN~~ 96 (293)
.|++|.++|+.+.+ .++.+++.++|. ++|+||||||.|.+++++++|+++||||||||+|++.|+| ++|||||++
T Consensus 64 ~~~~l~v~g~~i~v--~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~d~p~~~V~gvN~~ 141 (339)
T 2x5j_O 64 ERDQLFVGDDAIRV--LHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQD 141 (339)
T ss_dssp ETTEEEETTEEEEE--ECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCTTSSEECCTTTSGG
T ss_pred cCCeeEECCEEEEE--EecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccCCCCceeecccCHH
Confidence 46789999998776 334455566676 9999999999999999999999999999999999855788 999999999
Q ss_pred CCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCchHHHHHH
Q 022704 97 AYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 97 ~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
.|+++.+||||||||||||+|++|||+++|||+++.||||||+||+|+++|++|++||++|++++||||+++|++++++|
T Consensus 142 ~~~~~~~iIsnpsCttn~lap~lkpL~~~~gI~~~~~ttvha~Tg~q~~~d~~~~d~r~~r~a~~NiiP~~tg~a~ei~k 221 (339)
T 2x5j_O 142 QLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITR 221 (339)
T ss_dssp GCCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCC-----------CTTTTSCCCCCCEEECCCHHHHHHH
T ss_pred HhcCCCCEEECCCcHHHHHHHHHHHHHHccCcceeeEEEEEeccccccccccccccccchhhHHhCcccccCChHHHHHH
Confidence 99865699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+|+|||+|||+.+
T Consensus 222 vlp~l~gkl~~~a~rVP~~~g~~~~l~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~ 301 (339)
T 2x5j_O 222 FFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQ 301 (339)
T ss_dssp HSGGGTTSEEEEEEECSSCSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEEEE
T ss_pred HHHHhcCcEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcCCCcEEcccCCcccccccCCCCCceEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|++++++++|+++||||||||||||+||+.||++.
T Consensus 302 ~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~~ 336 (339)
T 2x5j_O 302 TRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMATV 336 (339)
T ss_dssp EEEETTTEEEEEEEECHHHHHHHHHHHHHHHHHCC
T ss_pred ceeccCCEEEEEEEeCCCcccHhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999764
No 20
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Probab=100.00 E-value=2.5e-86 Score=629.81 Aligned_cols=269 Identities=44% Similarity=0.711 Sum_probs=254.8
Q ss_pred CCCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcC
Q 022704 19 SASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD 96 (293)
Q Consensus 19 s~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~ 96 (293)
+.|+.+.|+|+.+.+ +++.+++.+.| .++|+||||||.|++++++++|+++|||+|++|+|+++++|++|||||++
T Consensus 59 ~~~~~l~v~g~~i~v--~~~~dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~~~~~p~~V~GvN~~ 136 (330)
T 1gad_O 59 VKDGHLIVNGKKIRV--TAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFD 136 (330)
T ss_dssp EETTEEEETTEEEEE--ECCSSGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGG
T ss_pred EcCCEEEECCEEEEE--EEcCChhhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCCCCCCCeEeecCCHH
Confidence 357789999999877 44445555555 68999999999999999999999999999999999965689999999999
Q ss_pred CCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch-hhHHhhhhcccccccCCCchHHHHH
Q 022704 97 AYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVA 175 (293)
Q Consensus 97 ~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~-~d~r~~r~~a~NIIP~~tGa~k~~~ 175 (293)
.|+ .++||||||||||||+|+||||+++|||+++.||||||+||+|+++|+++ +++|++|++++||||+++|+++|++
T Consensus 137 ~~~-~~~iIsNpsCtt~~lap~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~ 215 (330)
T 1gad_O 137 KYA-GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVG 215 (330)
T ss_dssp GCC-SCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCSSCGGGGSBTTTCCEEEECCTTTTHH
T ss_pred HhC-CCCEEEcCChHHHHHHHHHHHHHHhcCeeEEEEEEEEecccccccccccccCCCccccchhhCeEEcCCCcchhHH
Confidence 998 67899999999999999999999999999999999999999999999988 7899999999999999999999999
Q ss_pred HHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCC
Q 022704 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSS 255 (293)
Q Consensus 176 kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~ 255 (293)
|+||+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||+.
T Consensus 216 kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~k~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~ 295 (330)
T 1gad_O 216 KVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAK 295 (330)
T ss_dssp HHSGGGTTSEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEETT
T ss_pred HHHHHhcCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhcCCCCCEEeeECCceeeeeECCCCcceEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhc
Q 022704 256 LTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290 (293)
Q Consensus 256 ~t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~ 290 (293)
+|++++++++|+++||||||||||||+||+.||++
T Consensus 296 ~~~~~~~~~~k~~~wydne~gys~r~~d~~~~~~~ 330 (330)
T 1gad_O 296 AGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330 (330)
T ss_dssp TCEEEETTEEEEEEEECTTHHHHHHHHHHHHHTTC
T ss_pred cCeEecCCEEEEEEEECCCchhhhHHHHHHHHhcC
Confidence 99999889999999999999999999999999863
No 21
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Probab=100.00 E-value=2.3e-85 Score=624.72 Aligned_cols=269 Identities=46% Similarity=0.753 Sum_probs=255.3
Q ss_pred CCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|+++.++|+.+.+ +++.+++.++| .++|+||||||.|.+++.+++|+++|+||||||+|++ |+|++|||||++.
T Consensus 65 ~~~~l~~~g~~i~v--~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~-d~p~~V~gvN~~~ 141 (337)
T 3e5r_O 65 DSKTLLLGEKPVTV--FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK-DAPMFVCGVNEDK 141 (337)
T ss_dssp SSSEEEETTEEEEE--ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS-SSCBCCTTTTGGG
T ss_pred cCCeeEECCeEEEE--EecCChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCC-CCCEEEeccCHHH
Confidence 57789999999766 44446666656 6899999999999999999999999999999999984 6899999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch-hhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~-~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|++.++||||||||||||+|+||||+++|||+++.|||+||+||+|+++|+++ ++||++|++++||||+++|++++++|
T Consensus 142 ~~~~~~iIsnpsCtt~~la~~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~k 221 (337)
T 3e5r_O 142 YTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGK 221 (337)
T ss_dssp CCTTCCEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCSGGGSBGGGSCEEEECCHHHHHHH
T ss_pred hCCCCcEEECCChHHHHHHHHHHHHHHhcCccccceeEEEeeccccccccccccccccccccHhhCccccCCCchHHHHH
Confidence 98667899999999999999999999999999999999999999999999988 68999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||+.+
T Consensus 222 vlpel~gkl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~~~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~ 301 (337)
T 3e5r_O 222 VLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKA 301 (337)
T ss_dssp HSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTT
T ss_pred HHHHhCCcEEEEEEEeccCCeEEEEEEEEECCCccHHHHHHHHHHHhhCCCCCcccCCCCCeeeeeecCCCCceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|++++++++|+++||||||||||||+||+.||++.
T Consensus 302 ~~~~~~~~~k~~~wydne~gys~r~~~~~~~~~~~ 336 (337)
T 3e5r_O 302 GIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKT 336 (337)
T ss_dssp CEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHC
T ss_pred CcEecCCEEEEEEEeCCCcchHhHHHHHHHHHhcc
Confidence 99998899999999999999999999999999753
No 22
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1
Probab=100.00 E-value=7.6e-85 Score=620.32 Aligned_cols=269 Identities=44% Similarity=0.704 Sum_probs=254.9
Q ss_pred CCceeEECCEEEEEEEeecccccccCC--CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCCCeEEecCCcCC
Q 022704 20 ASLKPMLNQLVLMASLLMARSSRLFLT--ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA 97 (293)
Q Consensus 20 ~g~~~~f~g~~~~v~~~~~~~~~~f~~--~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dvPlvVpgVN~~~ 97 (293)
.|+++.++|+.+.+ +++.+++.+.| .++|+||||||.|.+++++++|+++|||+|++|+|+ +++|++|||||++.
T Consensus 63 ~~~~l~v~g~~i~v--~~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~-~~~p~~V~gvN~~~ 139 (335)
T 1u8f_O 63 ENGKLVINGNPITI--FQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS-ADAPMFVMGVNHEK 139 (335)
T ss_dssp ETTEEEETTEEEEE--ECCSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC-SSSCBCCTTTTGGG
T ss_pred cCCeEEECCeEEEE--EecCCHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCC-CCCCeEEeccCHHH
Confidence 46789999999876 34445566656 689999999999999999999999999999999996 46899999999999
Q ss_pred CCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccch-hhHHhhhhcccccccCCCchHHHHHH
Q 022704 98 YKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVAL 176 (293)
Q Consensus 98 ~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~-~d~r~~r~~a~NIIP~~tGa~k~~~k 176 (293)
|++.++||||||||||||+|+||||+++|||+++.|||+|++||+|+++|+++ +++|++|++++||||+++|++++++|
T Consensus 140 ~~~~~~iIsnpsCtt~~l~~~lkpL~~~~gI~~~~~tt~~a~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~k 219 (335)
T 1u8f_O 140 YDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGK 219 (335)
T ss_dssp CCTTCSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHHH
T ss_pred hCCCCCEEECCChHHHHHHHHHHHHHHhCCcceeEEEEEeccccCccccccccccccccchhhhcCceeccCChhHHHHH
Confidence 98667899999999999999999999999999999999999999999999998 79999999999999999999999999
Q ss_pred HccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC
Q 022704 177 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL 256 (293)
Q Consensus 177 vlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~ 256 (293)
+||+|+||++++|+||||++||++++++++++++++|||+++|+++++|+|||||+|+|+|+||+||+||+||+|||+.+
T Consensus 220 vlpel~gkl~~~a~rVP~~~g~~~~l~~~l~~~~t~eei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~ 299 (335)
T 1u8f_O 220 VIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGA 299 (335)
T ss_dssp HSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTT
T ss_pred HHHHhCCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCcEEcccCCCcceeeecCCCCceEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeCCceEEEEEEeCCCCchhhhHHHHHHHHhcc
Q 022704 257 TLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291 (293)
Q Consensus 257 t~~~~~~~vkl~~WyDNE~gys~r~~dl~~~~~~~ 291 (293)
|++++++++|+++||||||||||||+||+.||++.
T Consensus 300 ~~~~~~~~~k~~~wydne~gy~~r~~~~~~~~~~~ 334 (335)
T 1u8f_O 300 GIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASK 334 (335)
T ss_dssp CEEEETTEEEEEEEECTTHHHHHHHHHHHHHHHHT
T ss_pred CEEecCCEEEEEEEEcCcchhHhHHHHHHHHHhcc
Confidence 99998899999999999999999999999999764
No 23
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}
Probab=100.00 E-value=7.1e-46 Score=351.68 Aligned_cols=259 Identities=17% Similarity=0.182 Sum_probs=207.8
Q ss_pred CCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecC
Q 022704 18 PSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGV 93 (293)
Q Consensus 18 ~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgV 93 (293)
-++|+++.|+|+.+.+... +++ +| ++|+||+|+|.+.++++++.|+++|+ +|||+++ ++|+|++||||
T Consensus 37 ~~~g~~l~~~g~~i~v~~~---~~~--~~-~~DvV~~a~g~~~s~~~a~~~~~~G~--~vId~s~~~R~~~~~~~~vpev 108 (331)
T 2yv3_A 37 RSAGVRLAFRGEEIPVEPL---PEG--PL-PVDLVLASAGGGISRAKALVWAEGGA--LVVDNSSAWRYEPWVPLVVPEV 108 (331)
T ss_dssp GGSSCEEEETTEEEEEEEC---CSS--CC-CCSEEEECSHHHHHHHHHHHHHHTTC--EEEECSSSSTTCTTSCBCCTTS
T ss_pred ccCCCEEEEcCceEEEEeC---Chh--hc-CCCEEEECCCccchHHHHHHHHHCCC--EEEECCCccccCCCCCEEEcCc
Confidence 3689999999998877322 222 47 99999999999999999999999999 6777776 34789999999
Q ss_pred CcCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc------------hhhhccc-hhhHHhhhhcc
Q 022704 94 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD------------QRLLDAS-HRDLRRARAAA 160 (293)
Q Consensus 94 N~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~------------q~~~d~~-~~d~r~~r~~a 160 (293)
|++.|+..++|||||||+|+|++|+|+||+++|||++++|||||++||+ |+++|++ .+++|++|+++
T Consensus 109 N~~~i~~~~~iIanp~C~tt~~~~~l~pL~~~~~I~~~~vtt~~~~SgaG~~~~~~l~~q~~~~~~~~~~~~~~~~~~~a 188 (331)
T 2yv3_A 109 NREKIFQHRGIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHGEAPKAEAFAHPLP 188 (331)
T ss_dssp CGGGGGGCSSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHTSSCCCCCSSSSCCT
T ss_pred CHHHhcCCCCEEECCCHHHHHHHHHHHHHHHhCCceEEEEEEEeecccCCcchhHHHHHHHHhhhcCccccccccchhhh
Confidence 9999986567999999999999999999999999999999999999999 7777765 36889999999
Q ss_pred cccccCC--------CchHHHH----HHHc--cccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHccccc
Q 022704 161 LNIVPTS--------TGAAKAV----ALVL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNE 226 (293)
Q Consensus 161 ~NIIP~~--------tGa~k~~----~kvl--PeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~ 226 (293)
+||+|++ |++++++ +|+| |++ +++++|+|||+++||++++++++++++++|||+++|++++-
T Consensus 189 ~niiP~~~~~~~~~ht~e~~~i~~e~~kil~~~~l--~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~~~-- 264 (331)
T 2yv3_A 189 FNVIPHIDAFQENGYTREEMKVVWETHKIFGDDTI--RISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLKEAPG-- 264 (331)
T ss_dssp TCCBSCCSCBCTTSCBHHHHHHHHHHHHHTTCTTC--EEEEECCBCSCSSEEEEEEEEEESSCCCHHHHHHHHTTSTT--
T ss_pred cCcccccCccccCCCcHHHHHHHHHHHHHhCCCCc--eEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHcCCC--
Confidence 9999999 8887766 8999 887 69999999999999999999999999999999999998541
Q ss_pred ccCcccccCC--CceeccCCCCCceeeEeCCCceeeCCceEEEEEEeCCC-CchhhhHHHHHHHHhc
Q 022704 227 LKGILSVCDE--PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 290 (293)
Q Consensus 227 lkgil~~te~--~~VS~D~~~~~~s~i~d~~~t~~~~~~~vkl~~WyDNE-~gys~r~~dl~~~~~~ 290 (293)
--++.-.++ ..-..+..|.-+..|--...... .++.+.+++|.||- +|.|-+-|..+++|.+
T Consensus 265 -v~v~~~~~~~~~p~~~~~~g~~~~~igr~~~d~~-~~~~l~~~~~~DNl~kGAAg~AVq~~nl~~~ 329 (331)
T 2yv3_A 265 -VEVVDEPEAKRYPMPLTASGKWDVEVGRIRKSLA-FENGLDFFVVGDQLLKGAALNAVQIAEEWLK 329 (331)
T ss_dssp -CCBCCBTTTTBCCCHHHHTTCSSEEEEEEEECSS-STTEEEEEEEEETTHHHHTTHHHHHHHHHC-
T ss_pred -eEEEeCCCcCCCCChhhccCCceEEEEEEEECCC-CCCEEEEEEEechHHHHHHHHHHHHHHHHhh
Confidence 112211000 01112445544444421111111 23567899999999 8999999999988864
No 24
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.9e-47 Score=362.32 Aligned_cols=167 Identities=15% Similarity=0.200 Sum_probs=156.1
Q ss_pred CCCcEEEeccCCCCCHhhHH-HHHHcCCCcEEecCCCCCC-CC-eEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHh
Q 022704 47 ATPSISPGGTGVFVDREGAG-KHIQAGAKKVLITAPGKGD-IP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLD 123 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~-~hl~aGakkVVIs~ps~~d-vP-lvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~ 123 (293)
.++|+||||||.+.+.++++ .|+++| ++||+++|+++| +| |||||||++.|++ ++||||||||||||+|+||+||
T Consensus 80 ~~vDiV~eatg~~~s~~~a~~~~l~aG-~~VI~sap~~~d~vp~~vV~gvN~~~~~~-~~iIsn~sCtT~~lap~lk~L~ 157 (343)
T 2yyy_A 80 EDADIVVDGAPKKIGKQNLENIYKPHK-VKAILQGGEKAKDVEDNFNALWSYNRCYG-KDYVRVVSCNTTGLCRILYAIN 157 (343)
T ss_dssp GGCSEEEECCCTTHHHHHHHHTTTTTT-CEEEECTTSCGGGSSEEECTTTTHHHHTT-CSEEEECCHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCccccHHHHHHHHHHCC-CEEEECCCccccCCCceEEcccCHHHhcc-CCEEeccchhhHHHHHHHHHHH
Confidence 48999999999999999996 999999 458888888645 89 9999999999985 7899999999999999999999
Q ss_pred hhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccC----CCchHHHHHHHccccCCCeeEEEEecCCCeeeE
Q 022704 124 QKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT----STGAAKAVALVLPALKGKLNGIALRVPTPNVSV 199 (293)
Q Consensus 124 ~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~----~tGa~k~~~kvlPeL~gkv~~tavRVPV~~gs~ 199 (293)
++|||+++.||||||+||. + +++|++++||||+ .+|++|+++|+||+|+||++++|+||||++||+
T Consensus 158 ~~fgI~~~~vtT~~a~sg~-------~---~~~r~~~~NiiP~~i~~~tg~~k~~~kilp~l~gkl~~~avRVPv~~gh~ 227 (343)
T 2yyy_A 158 SIADIKKARIVLVRRAADP-------N---DDKTGPVNAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPTTLMHM 227 (343)
T ss_dssp TTSEEEEEEEEEEEESSCT-------T---CSSCCCSSCCEESSSSSSCTHHHHHHHHCGGGTTSEEEEEEEESCSSCEE
T ss_pred HHcCceEEEEEeeeeccCc-------C---cchhhHHhcccCCCCCCCCcchHHHHHhhhccccceeeEEEEecccceEE
Confidence 9999999999999999993 1 5678999999999 999999999999999999999999999999999
Q ss_pred EEEEEEecCcCcHHHHHHHHHHcccc
Q 022704 200 VDLVVQVSKKTFAEEVNAAFRESADN 225 (293)
Q Consensus 200 ~dltv~~~k~v~~eei~~~l~~a~~~ 225 (293)
++|+++|++++++|||+++|++++..
T Consensus 228 ~~l~v~l~~~~t~eei~~~l~~a~~v 253 (343)
T 2yyy_A 228 HTLMVEVDGDVSRDDILEAIKKTPRI 253 (343)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHSTTE
T ss_pred EEEEEEECCCCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999864
No 25
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=2.5e-45 Score=348.98 Aligned_cols=263 Identities=17% Similarity=0.101 Sum_probs=210.4
Q ss_pred CCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC-CCCCCeEEecCCcCC
Q 022704 19 SASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG-KGDIPTYVVGVNADA 97 (293)
Q Consensus 19 s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps-~~dvPlvVpgVN~~~ 97 (293)
++|+++.|+|+.+.+.. .+.+. |.++|+||+|+|.+.++++++.|+++|+|+|.+|++. ++++|++|||||++.
T Consensus 44 ~~g~~~~~~g~~i~~~~---~~~~~--~~~~DvV~~a~g~~~s~~~a~~~~~aG~kvId~Sa~~rd~~~~~~vpevN~~~ 118 (340)
T 2hjs_A 44 SAGQRMGFAESSLRVGD---VDSFD--FSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAER 118 (340)
T ss_dssp TTTCEEEETTEEEECEE---GGGCC--GGGCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGG
T ss_pred CCCCccccCCcceEEec---CCHHH--hcCCCEEEEcCCcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCeEEcCcCHHH
Confidence 78999999998876632 23332 6799999999999999999999999999766667766 456899999999999
Q ss_pred CCCCC--CeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchh-hhccch---hhHHhh---------hhcccc
Q 022704 98 YKPDE--PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR-LLDASH---RDLRRA---------RAAALN 162 (293)
Q Consensus 98 ~~~~~--~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~-~~d~~~---~d~r~~---------r~~a~N 162 (293)
|+..+ +|||||||+|+|++|+|+||+++|||++++|||||++||+|+ ++|+++ ++||++ |++++|
T Consensus 119 i~~~~~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~v~t~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~n 198 (340)
T 2hjs_A 119 LASQAAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFN 198 (340)
T ss_dssp GGGSCSSCEEECCCHHHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTC
T ss_pred HhcCcCCCEEEcCCHHHHHHHHHHHHHHHhcCcceEEEEEecccCCCCccccHhHHHHHHHHhccCCccccccchhhccC
Confidence 97543 799999999999999999999999999999999999999985 588765 678875 779999
Q ss_pred cccCCC-----c-------hHHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCc
Q 022704 163 IVPTST-----G-------AAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGI 230 (293)
Q Consensus 163 IIP~~t-----G-------a~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgi 230 (293)
|||+++ | ..++++|+||+++++++++|+||||++||++++++++++++++|||+++|++++ +--+
T Consensus 199 iip~~~~~~~~gh~~Ee~k~~~~~~kil~~~~~~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~~---~V~v 275 (340)
T 2hjs_A 199 LLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATK---GIEW 275 (340)
T ss_dssp CBSSSSCBCTTSCBHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHST---TEEE
T ss_pred eeccccCcccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEcCcCceEEEEEEEEECCCCCHHHHHHHHhcCC---CcEE
Confidence 999997 7 445567899999999999999999999999999999999999999999999754 2222
Q ss_pred ccccCCCceeccCCCCCceeeEeCCCceeeCCceEEEEEEeCC-CCchhhhHHHHHHHHhc
Q 022704 231 LSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDN-EWGYSQRVVDLADIVAN 290 (293)
Q Consensus 231 l~~te~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vkl~~WyDN-E~gys~r~~dl~~~~~~ 290 (293)
+...+-|-...+..|.-+..|--...... .++.+.+.+|.|| -+|.|-+.+..+++|.+
T Consensus 276 ~~~~~~p~~~~~v~g~~~~~vgr~r~~~~-~~~~l~~~~~~DNl~kGAA~~avq~~~l~~~ 335 (340)
T 2hjs_A 276 VGEGDYPTVVGDALGQDETYVGRVRAGQA-DPCQVNLWIVSDNVRKGAALNAVLLGELLIK 335 (340)
T ss_dssp CCTTCCCCCCCCCTTSSCEEEEEEEECSS-CTTEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_pred eCCCCCCccHHHcCCCCEEEEEEEEecCC-CCCEEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence 22111121111555554444432222211 3456889999999 99999999999988764
No 26
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*
Probab=100.00 E-value=1.1e-44 Score=344.05 Aligned_cols=261 Identities=19% Similarity=0.128 Sum_probs=192.0
Q ss_pred CCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecCC
Q 022704 19 SASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVN 94 (293)
Q Consensus 19 s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgVN 94 (293)
|+|+++.|+|+.+.+.. .+.+ .|.++|+||+|+|.+.++++++.|+++|+ +||++++ ++++|++|||||
T Consensus 41 ~~G~~~~~~~~~i~~~~---~~~~--~~~~vDvVf~a~g~~~s~~~a~~~~~~G~--~vId~s~~~R~~~~~~~~vpevN 113 (336)
T 2r00_A 41 SEGKTYRFNGKTVRVQN---VEEF--DWSQVHIALFSAGGELSAKWAPIAAEAGV--VVIDNTSHFRYDYDIPLVVPEVN 113 (336)
T ss_dssp TTTCEEEETTEEEEEEE---GGGC--CGGGCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCTTTC
T ss_pred CCCCceeecCceeEEec---CChH--HhcCCCEEEECCCchHHHHHHHHHHHcCC--EEEEcCCccccCCCCCeEeccCC
Confidence 68999999999877732 2332 46899999999999999999999999999 6676665 357899999999
Q ss_pred cCCCCCC--CCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccch-hhhccchh------------hHHhhhhc
Q 022704 95 ADAYKPD--EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-RLLDASHR------------DLRRARAA 159 (293)
Q Consensus 95 ~~~~~~~--~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q-~~~d~~~~------------d~r~~r~~ 159 (293)
++.|+.. .+|||||||+|+|++|+|+||+++|||++++|||||++||+| +++|+++. +++++|++
T Consensus 114 ~~~i~~~~~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~vtt~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (336)
T 2r00_A 114 PEAIAEFRNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQI 193 (336)
T ss_dssp GGGGGGGGGTTEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSSCCTTSCC------------------------
T ss_pred HHHhccccCCcEEECCChHHHHHHHHHHHHHHhCCccEEEEEEEEecccCChhhhHHHHHHHHHhhcCCCCCccccchhh
Confidence 9999752 579999999999999999999999999999999999999996 48887654 67899999
Q ss_pred ccccccCCC-----ch-------HHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccccc
Q 022704 160 ALNIVPTST-----GA-------AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNEL 227 (293)
Q Consensus 160 a~NIIP~~t-----Ga-------~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~l 227 (293)
++|+||+++ |+ .++++|+||+++++++++|+||||++||++++++++++++++|||+++|++++ .
T Consensus 194 a~niip~~~~~~~~gh~~Ee~k~~~e~~kil~~~~~~v~~t~~rVP~~~g~~~~~~~~l~~~~t~~ei~~~~~~~~---~ 270 (336)
T 2r00_A 194 AFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDAEQVMDMLEQTD---G 270 (336)
T ss_dssp -----CCBCTTTCSSCBHHHHHHHHHHHHHTTCTTCEEEEEEEEESSCBSEEEEEEEEESSCCCHHHHHHHHHHST---T
T ss_pred hcCcccccCCcccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEeccCcEEEEEEEEEeCCCCCHHHHHHHHHhCC---C
Confidence 999999985 74 55667889999999999999999999999999999999999999999999843 1
Q ss_pred cCcccccCCCceeccCCCCCceeeEeCCCceeeCCceEEEEEEeCCC-CchhhhHHHHHHHHhc
Q 022704 228 KGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 290 (293)
Q Consensus 228 kgil~~te~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vkl~~WyDNE-~gys~r~~dl~~~~~~ 290 (293)
--++...+-|-.-.+..|.-+..|--...... .++.+.++++.||- +|-|-+-+-.++.|.+
T Consensus 271 v~v~~~~~~p~~~~~v~g~~~~~vgr~~~d~~-~~~~l~~~~~~DNl~kGAAg~Avq~~nl~~~ 333 (336)
T 2r00_A 271 IELFRGADFPTQVRDAGGKDHVLVGRVRNDIS-HHSGINLWVVADNVRKGAATNAVQIAELLVR 333 (336)
T ss_dssp EEECCCCSSGGGCCCCCSSSCEEEEEEEEETT-EEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEECCCCCCcCHHHhCCCceEEEEEEEecCC-CCCEEEEEEEehhHHHhHHHHHHHHHHHHHh
Confidence 12222111121111445444333321110000 12457788889998 8999998888888764
No 27
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=100.00 E-value=4.1e-42 Score=330.26 Aligned_cols=201 Identities=13% Similarity=0.055 Sum_probs=173.1
Q ss_pred CCCceeE-ECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC----CCCCeEEecC
Q 022704 19 SASLKPM-LNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGV 93 (293)
Q Consensus 19 s~g~~~~-f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~----~dvPlvVpgV 93 (293)
|+|+++. |+|+++.+..+ .+.+. |+++|+||+|+|.+.++++++.|+++|+|++|||++++ +++|++||||
T Consensus 39 s~G~~v~~~~g~~i~~~~~--~~~~~--~~~~DvVf~a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpev 114 (367)
T 1t4b_A 39 QLGQAAPSFGGTTGTLQDA--FDLEA--LKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPV 114 (367)
T ss_dssp STTSBCCGGGTCCCBCEET--TCHHH--HHTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHH
T ss_pred CCCCCccccCCCceEEEec--CChHH--hcCCCEEEECCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCc
Confidence 6899996 88887666321 12222 57999999999999999999999999999999999983 4789999999
Q ss_pred CcCCCCCC--C--CeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccchh-h------------------hccch
Q 022704 94 NADAYKPD--E--PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR-L------------------LDASH 150 (293)
Q Consensus 94 N~~~~~~~--~--~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~q~-~------------------~d~~~ 150 (293)
|++.|+.. + ++|+||||+|+|++|+|+||+++|+|++++|+|||++||+++ . +|.++
T Consensus 115 N~~~i~~~~~~g~~~Ianp~Cttt~~~~al~pL~~~~~I~~~~vtt~~a~SGaG~~~~~el~~~~~~l~~~~~~~~~~~~ 194 (367)
T 1t4b_A 115 NQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPS 194 (367)
T ss_dssp HHHHHHHHHHTTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTT
T ss_pred CHHHHhhhhhcCCCEEEeCCHHHHHHHHHHHHHHHcCCCcEEEEEEEeccccccccchHHHHHHHhhhhccccccccccc
Confidence 99998742 2 699999999999999999999999999999999999999932 2 23344
Q ss_pred h---hHHh----------------hhhcccccccCCCc------------hHHHHHHHccc-cCCCeeEEEEecCCCeee
Q 022704 151 R---DLRR----------------ARAAALNIVPTSTG------------AAKAVALVLPA-LKGKLNGIALRVPTPNVS 198 (293)
Q Consensus 151 ~---d~r~----------------~r~~a~NIIP~~tG------------a~k~~~kvlPe-L~gkv~~tavRVPV~~gs 198 (293)
+ |+|| ++++++|+||+++| ..++++|++++ .+.+|+++|+||||++||
T Consensus 195 ~~ild~~r~~~~~~~~~~~~~~~f~~~~a~NiiP~~~~~~~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~ 274 (367)
T 1t4b_A 195 SAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCH 274 (367)
T ss_dssp CCHHHHHHHHHHHHHHTCSCCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEE
T ss_pred cchhhhhhccccccccccCcccccchhhhCceEEEecCccccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceE
Confidence 3 6766 58899999999988 77788999966 566999999999999999
Q ss_pred EEEEEEEecCcCcHHHHHHHHHHcc
Q 022704 199 VVDLVVQVSKKTFAEEVNAAFRESA 223 (293)
Q Consensus 199 ~~dltv~~~k~v~~eei~~~l~~a~ 223 (293)
++++++++++++++|||+++|++++
T Consensus 275 ~~~v~v~l~~~~t~eei~~~l~~~~ 299 (367)
T 1t4b_A 275 SQAFTIKLKKDVSIPTVEELLAAHN 299 (367)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHHHC
T ss_pred EEEEEEEECCCCCHHHHHHHHHhcC
Confidence 9999999999999999999999875
No 28
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Probab=100.00 E-value=1.5e-38 Score=303.41 Aligned_cols=257 Identities=17% Similarity=0.191 Sum_probs=193.1
Q ss_pred CCCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEec
Q 022704 17 PPSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVG 92 (293)
Q Consensus 17 ~~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpg 92 (293)
.-|+||++.|+|+++.++. . +.++|+++|+||+|+|.+.++++++.|+++|+ +|||+++ ++++|++|||
T Consensus 37 ~~~aG~~~~~~~~~~~~~~---~--~~~~~~~~Dvvf~a~~~~~s~~~a~~~~~~G~--~vID~Sa~~R~~~~~p~~vpe 109 (344)
T 3tz6_A 37 ARSQGRKLAFRGQEIEVED---A--ETADPSGLDIALFSAGSAMSKVQAPRFAAAGV--TVIDNSSAWRKDPDVPLVVSE 109 (344)
T ss_dssp TTTSSCEEEETTEEEEEEE---T--TTSCCTTCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCTT
T ss_pred cccCCCceeecCCceEEEe---C--CHHHhccCCEEEECCChHHHHHHHHHHHhCCC--EEEECCCccccCCCccEEEcc
Confidence 3589999999999987732 2 22346899999999999999999999999999 7888877 4678999999
Q ss_pred CCc-CCCCCC-CCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccchhhH----------------
Q 022704 93 VNA-DAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASHRDL---------------- 153 (293)
Q Consensus 93 VN~-~~~~~~-~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~~d~---------------- 153 (293)
||+ +.++.. ++|||||||+|+|++|+|+||+++|||++++|+|||++||+ .+.+++++...
T Consensus 110 vN~~~~i~~~~~~iIanpgC~tt~~~l~l~pL~~~~~i~~i~v~t~~~~SGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~ 189 (344)
T 3tz6_A 110 VNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDGGA 189 (344)
T ss_dssp TSHHHHTTCCTTSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHGGGGGGGGTCTTS
T ss_pred CCCHHHhhhcCCCEEECCCcHHHHHHHHHHHHHHhCCCceEEEEeccCCCccChhhhHHHHHHHHhhhcccccccccccc
Confidence 999 888764 68999999999999999999999999999999999999999 44455443221
Q ss_pred -------HhhhhcccccccCC-----Cch--HHHH-------HHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcH
Q 022704 154 -------RRARAAALNIVPTS-----TGA--AKAV-------ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFA 212 (293)
Q Consensus 154 -------r~~r~~a~NIIP~~-----tGa--~k~~-------~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~ 212 (293)
.+++++++|++|++ +|+ ++|+ +|++.....+++++|+|||+++||++.++++++++++.
T Consensus 190 ~~~~~~~~~~~~~aynv~p~i~~~~~~ghrHt~EE~k~~~e~~kilg~~~~~v~ft~vrvPv~rGh~~tv~v~l~~~~s~ 269 (344)
T 3tz6_A 190 LEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILGIPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSP 269 (344)
T ss_dssp SCCCCCSSSSSCCTTCCBCCCSCBCSSSSCCBHHHHHHHHHHHHHHTCTTCEEEEECCBCSCSSCEEEEEEEEESSCCCH
T ss_pred ccccccccccccccccccccccccccCCCcCCHHHHHHHHHHHHhcCCCCCceEEEEEEeceeceEEEEEEEEECCCCCH
Confidence 24567999999996 355 5553 35654333489999999999999999999999999999
Q ss_pred HHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeE----eCCCceeeCCceEEEEEEeCCC-CchhhhHHHHHHH
Q 022704 213 EEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTV----DSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADI 287 (293)
Q Consensus 213 eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~----d~~~t~~~~~~~vkl~~WyDNE-~gys~r~~dl~~~ 287 (293)
||++++|++++ .--++.|.. | .+..|.-+..|- |... -+++.+.+++=-||= ||=|-+-+-.++.
T Consensus 270 eei~~~l~~~p---~V~v~~~P~-p---~~v~gtn~~~Vgrir~d~~~---~~~~~l~~~~~~DNL~KGAAg~AVQ~anl 339 (344)
T 3tz6_A 270 ERARELLDGAT---GVQLVDVPT-P---LAAAGVDESLVGRIRRDPGV---PDGRGLALFVSGDNLRKGAALNTIQIAEL 339 (344)
T ss_dssp HHHHHHHHHCT---TEEECSSCC-H---HHHTTCSSEEEEEEEECTTS---GGGCEEEEEEEECTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhcCC---CeEEECCCC-h---HHhCCCceEEEEEEEecCCC---CCCCEEEEEEEEcchhHhHHHHHHHHHHH
Confidence 99999999653 212222221 1 122332222221 1100 001246666668994 7888888888877
Q ss_pred Hhc
Q 022704 288 VAN 290 (293)
Q Consensus 288 ~~~ 290 (293)
|.+
T Consensus 340 l~~ 342 (344)
T 3tz6_A 340 LTA 342 (344)
T ss_dssp HTC
T ss_pred HHh
Confidence 754
No 29
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=3.1e-39 Score=306.82 Aligned_cols=201 Identities=15% Similarity=0.195 Sum_probs=165.1
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCCC--CeEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhh
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI--PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQ 124 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~dv--PlvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~ 124 (293)
.++|+||+|||.+.+++.++.|+++|++ ||+++|.++|+ |++|||||++.+++ .+|||||||+|+||+|+||||++
T Consensus 77 ~~vDvV~~atp~~~~~~~a~~~l~aG~~-VId~sp~~~d~~~~~~V~gvN~e~~~~-~~iIanp~C~tt~l~~~l~pL~~ 154 (337)
T 1cf2_P 77 DEADIVIDCTPEGIGAKNLKMYKEKGIK-AIFQGGEKHEDIGLSFNSLSNYEESYG-KDYTRVVSCNTTGLCRTLKPLHD 154 (337)
T ss_dssp HTCSEEEECCSTTHHHHHHHHHHHHTCC-EEECTTSCHHHHSCEECHHHHGGGGTT-CSEEEECCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCchhhHHHHHHHHHcCCE-EEEecCCCCccCCCeEEeeeCHHHhcC-CCEEEcCCcHHHHHHHHHHHHHH
Confidence 4899999999999999999999999964 76666654355 99999999999985 68999999999999999999999
Q ss_pred hcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccC----CCchHHHHHHHccccCCCeeEEEEecCCCeeeEE
Q 022704 125 KFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT----STGAAKAVALVLPALKGKLNGIALRVPTPNVSVV 200 (293)
Q Consensus 125 ~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~----~tGa~k~~~kvlPeL~gkv~~tavRVPV~~gs~~ 200 (293)
+|||+++.|||||++||. .+++|++++||+|+ .++.+++++|+| +| +++++|+||||++||++
T Consensus 155 ~~gI~~~~vtt~~a~s~p----------~~~~~~~~~NiiP~~i~~~~~~~~ei~kil-~l--~v~~t~~rVPv~~g~~~ 221 (337)
T 1cf2_P 155 SFGIKKVRAVIVRRGADP----------AQVSKGPINAIIPNPPKLPSHHGPDVKTVL-DI--NIDTMAVIVPTTLMHQH 221 (337)
T ss_dssp HHCEEEEEEEEEEESSCT----------TCTTCCCSSCCEESSSSSSCTHHHHHHTTS-CC--CEEEEEEEESCCSCEEE
T ss_pred hcCcceeEEEEEEEeecC----------CccccchhcCEEeccCCCCCcchHHHHhhh-ee--EEEEEEEEcCccCeEEE
Confidence 999999999999999982 24567899999999 688899999999 87 69999999999999999
Q ss_pred EEEEEecCcCcHHHHHHHHHHcccccccCcccccCCCceeccCCCCCceeeEeCCC--ceeeCCceEEEEEEeCCC
Q 022704 201 DLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSL--TLVMGDDMVKVIAWYDNE 274 (293)
Q Consensus 201 dltv~~~k~v~~eei~~~l~~a~~~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~--t~~~~~~~vkl~~WyDNE 274 (293)
++++++++++++||++++|++++...+. ++ +++.+..+.+|+... +...+ ++.++..||||=
T Consensus 222 ~~~v~l~~~~t~eei~~~~~~~~~v~v~------~~-----~~~~~~~~~~~~~~~~~gr~r~-d~~~~~~w~~~~ 285 (337)
T 1cf2_P 222 NVMVEVEETPTVDDIIDVFEDTPRVILI------SA-----EDGLTSTAEIMEYAKELGRSRN-DLFEIPVWRESI 285 (337)
T ss_dssp EEEEEESSCCCHHHHHHHHHHSTTEEEE------CT-----TTTCCSHHHHHHHHHHHTCGGG-CCCSEEEEGGGC
T ss_pred EEEEEECCCCCHHHHHHHHHhCCCcEEe------cc-----ccCCCCCcchhhhhhhcCCCcc-Cchhheeehhee
Confidence 9999999999999999999998643321 11 222223333333222 33333 378889999873
No 30
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A
Probab=100.00 E-value=2.3e-38 Score=304.35 Aligned_cols=262 Identities=16% Similarity=0.147 Sum_probs=194.9
Q ss_pred CCCCCceeEECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEec
Q 022704 17 PPSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVG 92 (293)
Q Consensus 17 ~~s~g~~~~f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpg 92 (293)
.-|+|+++.|+|+++.++.+ +. .+|+++|+||||+|.+.++++++.|+++|+ +|||+++ ++++|++|||
T Consensus 38 ~~saG~~~~~~~~~~~~~~~---~~--~~~~~~Dvvf~a~~~~~s~~~a~~~~~~G~--~vIDlSa~~R~~~~~p~~vpe 110 (366)
T 3pwk_A 38 ARSAGKSLKFKDQDITIEET---TE--TAFEGVDIALFSAGSSTSAKYAPYAVKAGV--VVVDNTSYFRQNPDVPLVVPE 110 (366)
T ss_dssp TTTTTCEEEETTEEEEEEEC---CT--TTTTTCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCHH
T ss_pred cccCCCcceecCCCceEeeC---CH--HHhcCCCEEEECCChHhHHHHHHHHHHCCC--EEEEcCCccccCCCceEEEcc
Confidence 35899999999999877332 22 336899999999999999999999999999 6777766 4678999999
Q ss_pred CCcCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccchh---hHHh-------------
Q 022704 93 VNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASHR---DLRR------------- 155 (293)
Q Consensus 93 VN~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~~---d~r~------------- 155 (293)
||++.++.+.+|||||||+|+|++++|+||++.|||++++|+|||++||+ ++.+++++. +++.
T Consensus 111 vN~~~i~~~~~iIanpgC~tt~~~l~l~pL~~~~~i~~i~v~t~~~vSGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~y 190 (366)
T 3pwk_A 111 VNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEIL 190 (366)
T ss_dssp HHGGGGTTCCSEEECCCHHHHHHHHHHHHHHHHHCCSEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSS
T ss_pred CCHHHHcCCCCeEECCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEeccccCcchhhHHHHHHHHHhcccccccccCcccC
Confidence 99999986578999999999999999999999999999999999999999 335544321 2222
Q ss_pred h-------hhcccccccCC-----CchHHHHHHH-------ccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHH
Q 022704 156 A-------RAAALNIVPTS-----TGAAKAVALV-------LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 216 (293)
Q Consensus 156 ~-------r~~a~NIIP~~-----tGa~k~~~kv-------lPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~ 216 (293)
+ +++++|++|++ +|+++|++|+ +.....+++.+|+|||+++||++.++++++++++.+|++
T Consensus 191 ~~~~~HrH~~ia~NviP~I~~~~~~g~t~EE~k~~~E~~kil~~~~~~v~ftp~rVPv~rG~~~tv~v~l~~~~s~eei~ 270 (366)
T 3pwk_A 191 PSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVK 270 (366)
T ss_dssp SCTTSSCCCCCTTCCBCCSSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHH
T ss_pred CcccccccchhhccccceecccccCCCcHHHHHHHHHHHHHhcCCCCCeEEEEEEechhccEEEEEEEEECCCCCHHHHH
Confidence 2 78999999997 4888877654 444456899999999999999999999999999999999
Q ss_pred HHHHHcccccccCccccc---CCCceeccCCCCCceeeEeCCCceeeCCceEEEEEEeCCC-CchhhhHHHHHHHHhc
Q 022704 217 AAFRESADNELKGILSVC---DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 290 (293)
Q Consensus 217 ~~l~~a~~~~lkgil~~t---e~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vkl~~WyDNE-~gys~r~~dl~~~~~~ 290 (293)
++|++++- --++... .-|-. .+..|.-+..|-=.... ...++.+.+++=-||= +|=|-+-|-.++.|.+
T Consensus 271 ~~l~~~~~---V~v~~~~~~~~~P~~-~~v~gtn~~~Vgr~r~d-~~~~~~l~~~~~~DNL~KGAAg~AVQn~nlm~~ 343 (366)
T 3pwk_A 271 AAIAAFPG---AVLEDDVAHQIYPQA-INAVGSRDTFVGRIRKD-LDAEKGIHMWVVSDNLLKGAAWNSVQIAETLHE 343 (366)
T ss_dssp HHHHHSTT---EEECCBGGGTBCCCH-HHHTTCSSEEEEEEEEC-SSCTTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCCC---cEEecCcccCCCCch-hHcCCCCEEEEEEEEec-CCCCCEEEEEEEEccHHHhHHHHHHHHHHHHHH
Confidence 99998731 1111110 01111 12233322222100000 0113445566668995 6877777777777755
No 31
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}
Probab=100.00 E-value=2.1e-39 Score=312.56 Aligned_cols=256 Identities=14% Similarity=0.103 Sum_probs=189.3
Q ss_pred CCCceeE-ECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecC
Q 022704 19 SASLKPM-LNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGV 93 (293)
Q Consensus 19 s~g~~~~-f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgV 93 (293)
|+|+++. |+|+++.++.+ .+.+. |+++|+||+|+|.+.++++++.|+++|||++|||+|+ ++++|++||||
T Consensus 42 ~aG~~~~~~~~~~~~v~~~--~~~~~--~~~vDvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpev 117 (377)
T 3uw3_A 42 NAGGKAPSFAKNETTLKDA--TSIDD--LKKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPV 117 (377)
T ss_dssp CTTSBCCTTCCSCCBCEET--TCHHH--HHTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHH
T ss_pred hcCCCHHHcCCCceEEEeC--CChhH--hcCCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcC
Confidence 7999975 99887655321 12223 5799999999999999999999999999999999998 45789999999
Q ss_pred CcCCCCCC--CCe--eeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccchhh----------------
Q 022704 94 NADAYKPD--EPI--ISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASHRD---------------- 152 (293)
Q Consensus 94 N~~~~~~~--~~I--ISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~~d---------------- 152 (293)
|++.++.. ++| ||||||+|+|++|+|+||+++|+|++++|+|||++||+ .+.+++++..
T Consensus 118 N~~~i~~~~~~~i~~Ianp~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~l~~~~~~~~~~p~ 197 (377)
T 3uw3_A 118 NLNVIKDALVNGTKNFIGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLAQMGTLNGAVAAQLADPA 197 (377)
T ss_dssp HHHHHHHHHHTTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHTTHHHHTCTT
T ss_pred CHHHHhhhhhcCCcEEEcCCHHHHHHHHHHHHHHHhCCCCEEEEeeeecccccchhhHHHHHHHHHHhhccccccccccc
Confidence 99998642 444 99999999999999999999999999999999999999 3344332210
Q ss_pred ---------------------HHhhhhcccccccCCC-----chHHH-------HHHHcccc------CCCeeEEEEecC
Q 022704 153 ---------------------LRRARAAALNIVPTST-----GAAKA-------VALVLPAL------KGKLNGIALRVP 193 (293)
Q Consensus 153 ---------------------~r~~r~~a~NIIP~~t-----Ga~k~-------~~kvlPeL------~gkv~~tavRVP 193 (293)
-.+++++++|++|++. |++++ ++|++..+ ..+|++||+|||
T Consensus 198 ~~ild~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~~~~~i~Vs~t~vrVP 277 (377)
T 3uw3_A 198 SAILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNGMSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIG 277 (377)
T ss_dssp SCHHHHHHHHHHHHHSTTSCCTTTSSCCTBSCBSCCSCBCSSSCBHHHHHHHHHHHHHHTCCCTTSTTCCCEEEECCBCS
T ss_pred cccccccccccccccccccccccccccccCceEEeecccccCCCCHHHHHHHHHHHHHhcccccccCCCceEEEEeEEec
Confidence 1234579999999974 55555 45666653 458999999999
Q ss_pred CCeeeEEEEEEEecCcCcHHHHHHHHHHcccccccCccc--------ccCCCceeccCCCCCceee----EeCCCceeeC
Q 022704 194 TPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS--------VCDEPLVSVDFRCSDVSST----VDSSLTLVMG 261 (293)
Q Consensus 194 V~~gs~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~--------~te~~~VS~D~~~~~~s~i----~d~~~t~~~~ 261 (293)
|++||++.++++++++++.||++++|+++. +.--++. |+ .|. +..|.-+..| .|. .+
T Consensus 278 v~rGh~~tv~v~~~~~~~~eei~~~l~~~~--p~V~v~~~~~~~~~~~P-~p~---~v~G~n~v~VGrir~d~-----~~ 346 (377)
T 3uw3_A 278 AMRCHSQALTIKLKKDVPLDEINGILASAN--DWVKVVPNEREASMRDL-SPA---KVTGTLSVPVGRLRKLA-----MG 346 (377)
T ss_dssp BSSEEEEEEEEEESSCCCHHHHHHHHHTSC--SSEEECCSSHHHHHHHS-SHH---HHTTSSCEEEEEEEECT-----TC
T ss_pred ccceEEEEEEEEeCCCCCHHHHHHHHHhCC--CCEEEecCCcccccCCC-CHH---HhcCCCcEEEEEEEECC-----CC
Confidence 999999999999999999999999999872 1111111 11 111 2333222211 121 11
Q ss_pred CceEEEEEEeCC-CCchhhhHHHHHHHHh
Q 022704 262 DDMVKVIAWYDN-EWGYSQRVVDLADIVA 289 (293)
Q Consensus 262 ~~~vkl~~WyDN-E~gys~r~~dl~~~~~ 289 (293)
.+.+.+++=-|| -||=|-+.+..+..|.
T Consensus 347 ~~~l~~~~v~DNL~KGAAgqAvqn~nl~~ 375 (377)
T 3uw3_A 347 GEYLSAFTVGDQLLWGAAEPLRRMLRILL 375 (377)
T ss_dssp TTEEEEEEEEETTCCCCCHHHHHHHHHHH
T ss_pred CCEEEEEEEehhhhHhHHHHHHHHHHHHh
Confidence 244555555788 4687888777777765
No 32
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Probab=100.00 E-value=3.6e-39 Score=310.25 Aligned_cols=257 Identities=12% Similarity=0.074 Sum_probs=188.8
Q ss_pred CCCceeE-ECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC----CCCCCeEEecC
Q 022704 19 SASLKPM-LNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGV 93 (293)
Q Consensus 19 s~g~~~~-f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps----~~dvPlvVpgV 93 (293)
|+|+++. |+|+++.++.+. +.+. |+++|+||+|+|.+.++++++.|+++|||++|||+|+ ++++|++||||
T Consensus 38 ~aG~~~~~~~~~~~~~~~~~--~~~~--~~~~Dvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpev 113 (370)
T 3pzr_A 38 QIGVPAPNFGKDAGMLHDAF--DIES--LKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPV 113 (370)
T ss_dssp STTSBCCCSSSCCCBCEETT--CHHH--HTTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHH
T ss_pred ccCcCHHHhCCCceEEEecC--ChhH--hccCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccC
Confidence 5999975 998876663221 2223 5799999999999999999999999999999999998 35789999999
Q ss_pred CcCCCCCC--CC--eeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecccccc-hhhhccchhh----------------
Q 022704 94 NADAYKPD--EP--IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDASHRD---------------- 152 (293)
Q Consensus 94 N~~~~~~~--~~--IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~havsg~-q~~~d~~~~d---------------- 152 (293)
|++.++.. ++ +||||||+|+|++|+|+||+++|||++++|+|||++||+ .+.+++++..
T Consensus 114 N~~~i~~~~~~~i~~Ianp~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~~~~~~~~~l~~p~ 193 (370)
T 3pzr_A 114 NLKQILHGIHHGTKTFVGGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPA 193 (370)
T ss_dssp HHHHHHHHHHTTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHhhhhhcCCcEEEcCChHHHHHHHHHHHHHHhCCCcEEEEEeEEeccccChhhHHHHHHHHHHhhccccccccccc
Confidence 99998642 44 599999999999999999999999999999999999999 3344332210
Q ss_pred ---------------------HHhhhhcccccccCCC-----chHHHH-------HHHccc--cCCCeeEEEEecCCCee
Q 022704 153 ---------------------LRRARAAALNIVPTST-----GAAKAV-------ALVLPA--LKGKLNGIALRVPTPNV 197 (293)
Q Consensus 153 ---------------------~r~~r~~a~NIIP~~t-----Ga~k~~-------~kvlPe--L~gkv~~tavRVPV~~g 197 (293)
..+++++++|++|++. |+++++ +|++.. -..+|++||+||||++|
T Consensus 194 ~~ild~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~i~V~~t~vrVPv~rG 273 (370)
T 3pzr_A 194 SSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRC 273 (370)
T ss_dssp SCHHHHHHHHHHHHHSTTSCCTTTSSCCTTSEESCCSCBCTTSCBHHHHHHHHHHHHHTTCTTSCCCEECCCCEESCSSE
T ss_pred cccccccccccccccccccccccccccccCceeeeccccccCCCCHHHHHHHHHHHHHhCccCCCceEEEEeEEecccce
Confidence 1234568999999984 555554 456653 24589999999999999
Q ss_pred eEEEEEEEecCcCcHHHHHHHHHHcccccccCccc--------ccCCCceeccCCCCCceee----EeCCCceeeCCceE
Q 022704 198 SVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS--------VCDEPLVSVDFRCSDVSST----VDSSLTLVMGDDMV 265 (293)
Q Consensus 198 s~~dltv~~~k~v~~eei~~~l~~a~~~~lkgil~--------~te~~~VS~D~~~~~~s~i----~d~~~t~~~~~~~v 265 (293)
|++.++++++++++.+|++++|+++. +.--++. |+ .|. +..|.-+..| .|.. +++.+
T Consensus 274 h~~tv~v~~~~~~~~~ei~~~l~~~~--p~V~v~~~~~~~~~~~P-~p~---~v~G~n~v~VGrir~d~~-----~~~~l 342 (370)
T 3pzr_A 274 HSQALTIKLKQNIPLDEIEEMIATHN--DWVKVIPNERDITAREL-TPA---KVTGTLSVPVGRLRKMAM-----GDDFL 342 (370)
T ss_dssp EEEEEEEEESSCCCHHHHHHHHHTSC--SSEEECCSCHHHHHHHS-SHH---HHTTSCCEEEEEEEEETT-----EEEEE
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHhCC--CCEEEecCCcccccCCC-CHH---HhcCCccEEEEEEEECCC-----CCCEE
Confidence 99999999999999999999999872 2111111 11 111 2333222211 1210 11234
Q ss_pred EEEEEeCC-CCchhhhHHHHHHHHhc
Q 022704 266 KVIAWYDN-EWGYSQRVVDLADIVAN 290 (293)
Q Consensus 266 kl~~WyDN-E~gys~r~~dl~~~~~~ 290 (293)
.+++=-|| -||=|-+.+..+..|.+
T Consensus 343 ~~~~v~DNL~KGAAgqAvQn~Nl~~~ 368 (370)
T 3pzr_A 343 NAFTVGDQLLWGAAEPLRRTLRIILA 368 (370)
T ss_dssp EEEEEEETTTTTTHHHHHHHHHHHHH
T ss_pred EEEEEehhhhHhHHHHHHHHHHHHHh
Confidence 44444798 47888888888877765
No 33
>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*
Probab=100.00 E-value=4.4e-38 Score=301.51 Aligned_cols=269 Identities=15% Similarity=0.114 Sum_probs=194.2
Q ss_pred CcccCccccCCCCCCCCCCceeEEC------------CEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHH
Q 022704 3 PEVSSRPLTSSSTTPPSASLKPMLN------------QLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQ 70 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~s~g~~~~f~------------g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~ 70 (293)
|++.-..++|+ -|+|+++.+- ++++.++. .+.+ +|+++|+||+|+|.+.++++++.|++
T Consensus 31 P~~el~~l~S~----~saGk~~~~~~p~~~~~~~~~~~~~~~v~~---~~~~--~~~~vDvvf~a~p~~~s~~~a~~~~~ 101 (359)
T 4dpk_A 31 PYIKPAYLAGK----GSVGKPYGEVVRWQTVGQVPKEIADMEIKP---TDPK--LMDDVDIIFSPLPQGAAGPVEEQFAK 101 (359)
T ss_dssp SSEEEEEEEES----TTTTSBHHHHCCCCSSSCCCHHHHTCBCEE---CCGG--GCTTCCEEEECCCTTTHHHHHHHHHH
T ss_pred CCceEEEEECc----hhcCCChhHhcccccccccccccccceEEe---CCHH--HhcCCCEEEECCChHHHHHHHHHHHH
Confidence 44444555443 4889998641 23444522 2223 35799999999999999999999999
Q ss_pred cCCCcEEecCCC--CCCCCeEEecCCcCCCCC--C--------CCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecc
Q 022704 71 AGAKKVLITAPG--KGDIPTYVVGVNADAYKP--D--------EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 138 (293)
Q Consensus 71 aGakkVVIs~ps--~~dvPlvVpgVN~~~~~~--~--------~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~ha 138 (293)
+|++.|.+|++. ++++|++|||||++.++. . .+|||||||+|+|++++|+||+++|||++++|+|||+
T Consensus 102 ~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~~l~L~PL~~~~gi~~v~v~t~~g 181 (359)
T 4dpk_A 102 EGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQS 181 (359)
T ss_dssp TTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHHHHHHHHHHHHSCEEEEEEEEEEC
T ss_pred CCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHHHHHHHHHHHhcCCcEEEEEEEec
Confidence 999444334443 467899999999999853 1 2599999999999999999999999999999999999
Q ss_pred cccchhhhccchhhHHhhhhcccccccCCCch-HH---HHHHHccccCC----------CeeEEEEecCCCeeeEEEEEE
Q 022704 139 YTGDQRLLDASHRDLRRARAAALNIVPTSTGA-AK---AVALVLPALKG----------KLNGIALRVPTPNVSVVDLVV 204 (293)
Q Consensus 139 vsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa-~k---~~~kvlPeL~g----------kv~~tavRVPV~~gs~~dltv 204 (293)
+||+++. +.+ .+.+++|++|+++|. .| |+.|+|++++| +++++|+|||+++||++++++
T Consensus 182 ~SGaG~~--~~~-----~~~~~~N~ipy~~~~e~k~~~Ei~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v 254 (359)
T 4dpk_A 182 LSGAGYP--GIP-----SLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYV 254 (359)
T ss_dssp SGGGCSS--CSB-----GGGTTTCCEECCHHHHHHHHHHHHHHHHTSCCSCCCSCGGGCEEEEEEEECSCSSCEEEEEEE
T ss_pred cccCCCc--Ccc-----ChHHhCCeEeecCcHHHHHHHHHHHHHhhcccccccccccCCceEEEEEEecccccEEEEEEE
Confidence 9999875 222 246899999999876 55 57899998776 899999999999999999999
Q ss_pred EecCcCcHHHHHHHHHHccccc-ccCcccccCCCcee-----------cc--CCC--CCceeeEeCCCceeeCCceEEEE
Q 022704 205 QVSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVS-----------VD--FRC--SDVSSTVDSSLTLVMGDDMVKVI 268 (293)
Q Consensus 205 ~~~k~v~~eei~~~l~~a~~~~-lkgil~~te~~~VS-----------~D--~~~--~~~s~i~d~~~t~~~~~~~vkl~ 268 (293)
+++++++.|||+++|+++.+.+ -.++...++ |+|- .+ -++ +-...| +.... .+.+.+.++
T Consensus 255 ~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p~-~fV~v~~~~~~P~~~~~~g~~~~~~~~~~V--gr~r~-~~~~~l~~~ 330 (359)
T 4dpk_A 255 SFKEETAAEKVKETLENFRGEPQDLKLPTAPS-KPIIVMNEDTRPQVYFDRWAGDIPGMSVVV--GRLKQ-VNKRMIRLV 330 (359)
T ss_dssp EESSCCCHHHHHHHHHTCCCHHHHTTCTTCCS-CSEEECCSTTCCCHHHHTTCTTTTTCSEEE--EEEEE-EETTEEEEE
T ss_pred EECCCCCHHHHHHHHHHhhcccccccccCCCC-ccEEEcCCCCCCCHHHhhccCCCcCCeEEE--EEEEE-cCCCEEEEE
Confidence 9999999999999999987641 112222221 1111 11 111 000111 00000 123456677
Q ss_pred EEeCCC-CchhhhHHHHHHHHhcc
Q 022704 269 AWYDNE-WGYSQRVVDLADIVANN 291 (293)
Q Consensus 269 ~WyDNE-~gys~r~~dl~~~~~~~ 291 (293)
+=-||= +|=|-+-+-.++.|.++
T Consensus 331 ~~~DNL~KGAAg~AVQn~nl~~~~ 354 (359)
T 4dpk_A 331 SLIHNTVRGAAGGGILAAELLVEK 354 (359)
T ss_dssp EEECTTTTTTHHHHHHHHHHHHHT
T ss_pred EEEhhhhHhHHHHHHHHHHHHHHc
Confidence 779994 68888878777777653
No 34
>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*
Probab=100.00 E-value=4.4e-38 Score=301.51 Aligned_cols=270 Identities=16% Similarity=0.127 Sum_probs=194.2
Q ss_pred CcccCccccCCCCCCCCCCceeEEC------------CEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHH
Q 022704 3 PEVSSRPLTSSSTTPPSASLKPMLN------------QLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQ 70 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~s~g~~~~f~------------g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~ 70 (293)
|++.-..++|+ -|+|+++.+- ++++.++. .+.+ +|+++|+||+|+|.+.++++++.|++
T Consensus 31 P~~el~~l~S~----~saGk~~~~~~p~~~~~~~~~~~~~~~v~~---~~~~--~~~~vDvvf~a~p~~~s~~~a~~~~~ 101 (359)
T 4dpl_A 31 PYIKPAYLAGK----GSVGKPYGEVVRWQTVGQVPKEIADMEIKP---TDPK--LMDDVDIIFSPLPQGAAGPVEEQFAK 101 (359)
T ss_dssp SSEEEEEEEES----TTTTSBHHHHCCCCSSSCCCHHHHTCBCEE---CCGG--GCTTCCEEEECCCTTTHHHHHHHHHH
T ss_pred CCceEEEEECc----hhcCCChhHhcccccccccccccccceEEe---CCHH--HhcCCCEEEECCChHHHHHHHHHHHH
Confidence 44444555443 4889998641 23444522 2223 35799999999999999999999999
Q ss_pred cCCCcEEecCCC--CCCCCeEEecCCcCCCCC--C--------CCeeeCCCcchhhhhhHHHHHhhhcCccEEEEeeecc
Q 022704 71 AGAKKVLITAPG--KGDIPTYVVGVNADAYKP--D--------EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHS 138 (293)
Q Consensus 71 aGakkVVIs~ps--~~dvPlvVpgVN~~~~~~--~--------~~IISn~sCtTn~lap~lk~L~~~fgI~~~~~TT~ha 138 (293)
+|++.|.+|++. ++++|++|||||++.++. . .+|||||||+|+|++++|+||+++|||++++|+|||+
T Consensus 102 ~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~~l~L~PL~~~~gi~~v~v~t~~g 181 (359)
T 4dpl_A 102 EGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQS 181 (359)
T ss_dssp TTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHHHHHHHHHHHHSCEEEEEEEEEBC
T ss_pred CCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHHHHHHHHHHHhcCCcEEEEEEEec
Confidence 999444334443 467899999999999853 1 2599999999999999999999999999999999999
Q ss_pred cccchhhhccchhhHHhhhhcccccccCCCch-HH---HHHHHccccCC----------CeeEEEEecCCCeeeEEEEEE
Q 022704 139 YTGDQRLLDASHRDLRRARAAALNIVPTSTGA-AK---AVALVLPALKG----------KLNGIALRVPTPNVSVVDLVV 204 (293)
Q Consensus 139 vsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa-~k---~~~kvlPeL~g----------kv~~tavRVPV~~gs~~dltv 204 (293)
+||+++. +.+ .+.+++|++|+++|. .| |+.|+|++++| +++++|+|||+++||++++++
T Consensus 182 ~SGaG~~--~~~-----~~~~~~N~ipy~~~~e~k~~~Ei~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v 254 (359)
T 4dpl_A 182 LSGAGYP--GIP-----SLDVVDNILPLGDGYDAKTIKEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYV 254 (359)
T ss_dssp GGGGCSS--CSB-----HHHHTTCCEECCHHHHHHHHHHHHHHHTTSCCSSCCSCGGGCEEEEECEECSCSSCEEEEEEE
T ss_pred cccCCCc--Ccc-----ChHHhCCeEeecCcHHHHHHHHHHHHHhhcccccccccccCCceEEEEEEecccccEEEEEEE
Confidence 9999875 222 246899999999876 55 57899998876 899999999999999999999
Q ss_pred EecCcCcHHHHHHHHHHccccc-ccCcccccCC----------Cceecc--CCC--CCceeeEeCCCceeeCCceEEEEE
Q 022704 205 QVSKKTFAEEVNAAFRESADNE-LKGILSVCDE----------PLVSVD--FRC--SDVSSTVDSSLTLVMGDDMVKVIA 269 (293)
Q Consensus 205 ~~~k~v~~eei~~~l~~a~~~~-lkgil~~te~----------~~VS~D--~~~--~~~s~i~d~~~t~~~~~~~vkl~~ 269 (293)
+++++++.|||+++|+++.+.+ -.++...++. |-.-.+ -++ +-...| +.... .+.+.+.+++
T Consensus 255 ~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p~~fV~v~~~~~~P~~~~~~g~~~~~~~~~~V--gr~r~-~~~~~l~~~~ 331 (359)
T 4dpl_A 255 SFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNEDTRPQVYFDRWAGDIPGMSVVV--GRLKQ-VNKRMIRLVS 331 (359)
T ss_dssp EESSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEEECSTTCCCHHHHTTCTTTTTCSEEE--EEEEE-EETTEEEEEE
T ss_pred EECCCCCHHHHHHHHHHhhcccccccccCCCCccEEEcCCCCCCCHHHhhccCCCcCCeEEE--EEEEE-cCCCEEEEEE
Confidence 9999999999999999987641 1122222221 111011 111 000111 00000 1234566777
Q ss_pred EeCCC-CchhhhHHHHHHHHhcc
Q 022704 270 WYDNE-WGYSQRVVDLADIVANN 291 (293)
Q Consensus 270 WyDNE-~gys~r~~dl~~~~~~~ 291 (293)
=-||= +|=|-+-+-.++.|.++
T Consensus 332 ~~DNL~KGAAg~AVQn~nl~~~~ 354 (359)
T 4dpl_A 332 LIHNTVRGAAGGGILAAELLVEK 354 (359)
T ss_dssp EECTTTTTTHHHHHHHHHHHHHT
T ss_pred EEhhhhHhHHHHHHHHHHHHHHc
Confidence 79994 68888878777777653
No 35
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=7e-37 Score=290.93 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=145.8
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCC-CCCeEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhhh
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQK 125 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~-dvPlvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~~ 125 (293)
.++|+||+|||.+.+++.++.|+++|+|+|.+|++..+ .+++||+|+|++.+.+ .++|+||||+||||+|+||+|+++
T Consensus 76 ~~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~~-~~iIsnpsCtt~~l~~~lk~L~~~ 154 (340)
T 1b7g_O 76 KTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALG-KKYIRVVSCNTTALLRTICTVNKV 154 (340)
T ss_dssp HHCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHTT-CSEEEECCHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHcC-CCCcccCCcHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999987777777632 3479999999766433 459999999999999999999999
Q ss_pred cCccEEEEeeecccccchhhhccchhhHHhhhhcccccccC----CCchHHHHHHHccccCCCeeEEEEecCCCeeeEEE
Q 022704 126 FGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT----STGAAKAVALVLPALKGKLNGIALRVPTPNVSVVD 201 (293)
Q Consensus 126 fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~----~tGa~k~~~kvlPeL~gkv~~tavRVPV~~gs~~d 201 (293)
|||+++.|||+|+++. ++++ .|++..||+|. .+|++++++|++|+| +++++|+||||++||+++
T Consensus 155 ~gI~~~~~tt~~~~~~-------~~~~---~~~~~~niip~~~~i~t~~a~ev~~vlp~l--~l~~~a~rVPv~~gh~~~ 222 (340)
T 1b7g_O 155 SKVEKVRATIVRRAAD-------QKEV---KKGPINSLVPDPATVPSHHAKDVNSVIRNL--DIATMAVIAPTTLMHMHF 222 (340)
T ss_dssp SCEEEEEEEEEEESSC-------TTCC---SCCCSSCCEESSSSSSCTHHHHHHTTSTTC--EEEEEEEEESCSSCEEEE
T ss_pred CCeEEEEEEEEeccCC-------cccc---hHHHHcCCCCCCcCCCCCchhHHHHhCCCC--cEEEEEEEeccCCeEEEE
Confidence 9999999999998753 2322 45788999988 689999999999999 599999999999999999
Q ss_pred EEEEecCcCcHHHHHHHHHHccc
Q 022704 202 LVVQVSKKTFAEEVNAAFRESAD 224 (293)
Q Consensus 202 ltv~~~k~v~~eei~~~l~~a~~ 224 (293)
+++++++++++|||+++|+++++
T Consensus 223 l~v~l~~~~t~eei~~~l~~a~~ 245 (340)
T 1b7g_O 223 INITLKDKVEKKDILSVLENTPR 245 (340)
T ss_dssp EEEEESSCCCHHHHHHHHHTCTT
T ss_pred EEEEECCCCCHHHHHHHHHcCCC
Confidence 99999999999999999998875
No 36
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Probab=100.00 E-value=1.8e-36 Score=290.00 Aligned_cols=252 Identities=13% Similarity=0.050 Sum_probs=189.2
Q ss_pred CCCCceeE-----ECCE---EEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC---C--
Q 022704 18 PSASLKPM-----LNQL---VLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK---G-- 84 (293)
Q Consensus 18 ~s~g~~~~-----f~g~---~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~---~-- 84 (293)
.++|+++. |+|. ++.+ ++ +. .|+++|+||+|+|.+.++++++.| ++|+ +|||++++ +
T Consensus 51 ~~~g~~~~~~~~~~~~~v~~dl~~---~~---~~-~~~~vDvVf~atp~~~s~~~a~~~-~aG~--~VId~sa~~R~~~~ 120 (359)
T 1xyg_A 51 RKAGQSMESVFPHLRAQKLPTLVS---VK---DA-DFSTVDAVFCCLPHGTTQEIIKEL-PTAL--KIVDLSADFRLRNI 120 (359)
T ss_dssp TTTTSCHHHHCGGGTTSCCCCCBC---GG---GC-CGGGCSEEEECCCTTTHHHHHHTS-CTTC--EEEECSSTTTCSCH
T ss_pred hhcCCCHHHhCchhcCccccccee---cc---hh-HhcCCCEEEEcCCchhHHHHHHHH-hCCC--EEEECCccccCCch
Confidence 47888887 7773 4333 21 22 367999999999999999999999 9999 68888773 1
Q ss_pred ------------------CCCeEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCcc--EEEEeeecccccchh
Q 022704 85 ------------------DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGII--KGTMTTTHSYTGDQR 144 (293)
Q Consensus 85 ------------------dvPlvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~--~~~~TT~havsg~q~ 144 (293)
+.++.|||+|++.++. .+|||||||+|+|++|+|+||+++|+|+ +++|+|+|++||+|+
T Consensus 121 ~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i~~-~~iIanpgC~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~ 199 (359)
T 1xyg_A 121 AEYEEWYGQPHKAVELQKEVVYGLTEILREDIKK-ARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGVSGAGR 199 (359)
T ss_dssp HHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHHT-CSEEECCCHHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCS
T ss_pred hhhhhhhcCCcCChhhcCCceEECCccCHHHhcc-CCEEECCCcHHHHHHHHHHHHHHcCCCCCCeEEEEEEEEccccCc
Confidence 2455566669999875 6899999999999999999999999999 999999999999988
Q ss_pred -hhccchhhHHhhhhcccccccCCCchHH-------HHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHH
Q 022704 145 -LLDASHRDLRRARAAALNIVPTSTGAAK-------AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 216 (293)
Q Consensus 145 -~~d~~~~d~r~~r~~a~NIIP~~tGa~k-------~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~ 216 (293)
.+|+++.++ ++.|++|+.+|..+ +++|++.+ +.+++++|+|||+++||+++++++++++++.|||+
T Consensus 200 ~~~~~~~~~~-----~~~ni~py~~~~h~h~pEi~~~l~~~~~~-~~~v~~t~~rvP~~~G~~~~i~~~l~~~~t~eei~ 273 (359)
T 1xyg_A 200 GAKEANLYSE-----IAEGISSYGVTRHRHVPEIEQGLSDVAQS-KVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLH 273 (359)
T ss_dssp CCCGGGBHHH-----HTTCCEECSCSCCTHHHHHHHHHHHHHTS-CCCCEEECEEESSSSCEEEEEEEEBCTTCCHHHHH
T ss_pred ccchhhhhHH-----HhcCeecccccccccHHHHHHHHHHhcCC-CCCEEEEEEEecccceEEEEEEEEeCCCCCHHHHH
Confidence 577766443 56899999988422 33444432 34899999999999999999999999999999999
Q ss_pred HHHHHcccc-cccCcccccCCCceeccCCCCCceeeEeCCCceeeCCceEEEEEEeCCC-CchhhhHHHHHHHHhc
Q 022704 217 AAFRESADN-ELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 290 (293)
Q Consensus 217 ~~l~~a~~~-~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vkl~~WyDNE-~gys~r~~dl~~~~~~ 290 (293)
++|+++.++ ++--++...+-|-. .+..|.-+..|- ..... .++.+.+++|.||- +|.|-+-+..++.|..
T Consensus 274 ~~~~~~y~~~~~V~v~~~~~~p~~-~~v~g~n~~~ig-~~~d~--~~~~l~~~~~~DNl~kGAAg~Avq~~nl~~g 345 (359)
T 1xyg_A 274 QQLKTSYEDEEFVKVLDEGVVPRT-HNVRGSNYCHMS-VFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIMLG 345 (359)
T ss_dssp HHHHHHHTTCSSEEECCTTCCCBG-GGTTTSSCEEEE-EEECS--STTEEEEEEEECTTTTTTHHHHHHHHHHHTT
T ss_pred HHHHHhhCCCCCEEEcCCCCCCCH-HHhcCCCeEEEE-EEEeC--CCCEEEEEEEehhhhHhHHHHHHHHHHHHhC
Confidence 999987643 33333321112221 244554444442 11111 23467799999999 8999999999988854
No 37
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.8e-36 Score=285.22 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=152.5
Q ss_pred CCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC----CCCCeEEecCCcCCCCC----------CCCeeeCCCcc
Q 022704 46 TATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKP----------DEPIISNASCT 111 (293)
Q Consensus 46 ~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~----~dvPlvVpgVN~~~~~~----------~~~IISn~sCt 111 (293)
|.++|+||+|+|.+.+++.++.|+++|+ .|||++++ +++|++|||||++.|.. ..+|||||||+
T Consensus 75 ~~~vDvVf~atp~~~s~~~a~~~~~aG~--~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~~iIanpgC~ 152 (350)
T 2ep5_A 75 HKDVDVVLSALPNELAESIELELVKNGK--IVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCT 152 (350)
T ss_dssp GTTCSEEEECCCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSSEEEECCCHH
T ss_pred hcCCCEEEECCChHHHHHHHHHHHHCCC--EEEECCccccCCCCCCeeCCccCHHHhcChHhhhhhcccCceEEEcCchH
Confidence 4789999999999999999999999999 58888873 47899999999998863 23599999999
Q ss_pred hhhhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCch-HHHH---HHHccccCC----
Q 022704 112 TNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA-AKAV---ALVLPALKG---- 183 (293)
Q Consensus 112 Tn~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa-~k~~---~kvlPeL~g---- 183 (293)
|+|++|+|+||+++|||++++|+|+|++||+|+. +.+ .+.+++|++|+++|. .|.+ .|+||+++|
T Consensus 153 tt~~~l~l~pL~~~~gi~~i~v~t~~~~SGaG~~--~~~-----~~~~~~ni~py~~~~e~k~~~E~~~~l~~~~g~~~~ 225 (350)
T 2ep5_A 153 AAIMSMPIKPLIEIATKSKIIITTLQAVSGAGYN--GIS-----FMAIEGNIIPYIKGEEDKIAKELTKLNGKLENNQII 225 (350)
T ss_dssp HHHHHHHHGGGHHHHHTSEEEEEEEECGGGGCSS--SSB-----HHHHTTCCBCCCTTHHHHHHHHHHHHTCEECSSSEE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEEEecCcCCCC--CCC-----ChHHhCCEEeccCCcchHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999999999876 222 356899999999996 6654 799999876
Q ss_pred ----CeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHccc
Q 022704 184 ----KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 224 (293)
Q Consensus 184 ----kv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~ 224 (293)
+++++|+|||+++||+++++++++++++.|||+++|+++..
T Consensus 226 ~~~~~v~~t~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~~~ 270 (350)
T 2ep5_A 226 PANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKS 270 (350)
T ss_dssp CCCCEEEEEEEECSCSSCEEEEEEEECCSCCCHHHHHHHHHTCCC
T ss_pred cccccEEEEeEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999999874
No 38
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}
Probab=100.00 E-value=5.2e-35 Score=282.28 Aligned_cols=196 Identities=21% Similarity=0.197 Sum_probs=159.2
Q ss_pred CCCCceeE----EC--------CEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC---
Q 022704 18 PSASLKPM----LN--------QLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG--- 82 (293)
Q Consensus 18 ~s~g~~~~----f~--------g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps--- 82 (293)
-||||++. |. ++++.++. .+.+. +|+++|+||+|+|.+.++++++.++++|+ +|||+++
T Consensus 55 ~saGk~~~~~~~~~~~~~~p~~~~~~~v~~---~~~~~-~~~~~Dvvf~alp~~~s~~~~~~~~~~G~--~VIDlSa~fR 128 (381)
T 3hsk_A 55 RSAGKKYKDAASWKQTETLPETEQDIVVQE---CKPEG-NFLECDVVFSGLDADVAGDIEKSFVEAGL--AVVSNAKNYR 128 (381)
T ss_dssp TTTTSBHHHHCCCCCSSCCCHHHHTCBCEE---SSSCT-TGGGCSEEEECCCHHHHHHHHHHHHHTTC--EEEECCSTTT
T ss_pred cccCCCHHHhcccccccccccccccceEEe---Cchhh-hcccCCEEEECCChhHHHHHHHHHHhCCC--EEEEcCCccc
Confidence 38999984 32 24555532 22220 35799999999999999999999999999 6777776
Q ss_pred -CCCCCeEEecCCcCCCC---------------CCCCeeeCCCcchhhhhhHHHHHhhhcC-ccEEEEeeecccccchhh
Q 022704 83 -KGDIPTYVVGVNADAYK---------------PDEPIISNASCTTNCLAPFVKVLDQKFG-IIKGTMTTTHSYTGDQRL 145 (293)
Q Consensus 83 -~~dvPlvVpgVN~~~~~---------------~~~~IISn~sCtTn~lap~lk~L~~~fg-I~~~~~TT~havsg~q~~ 145 (293)
++|+|++||+||++.|. ...+|||||||+|+|++++|+||+++|| |++++|+|||++||+++.
T Consensus 129 ~~~~vplvv~~vn~~~~~l~E~~r~~~~~~~~i~~~~iIaNPgC~tt~~~laL~PL~~~~glI~~v~v~t~~gvSGAG~~ 208 (381)
T 3hsk_A 129 REKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLKPLVEKFGPIDALTTTTLQAISGAGFS 208 (381)
T ss_dssp TCTTSCEECTTTCGGGGHHHHHHHHHHHHTTCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEEEEBCCCC----
T ss_pred CCCCCcEEecccCHHHcCCHhhhhhhhcccccccCCcEEECCCcHHHHHHHHHHHHHHhcCCceEEEEEEeeccCCCCcc
Confidence 46789999999999885 2345999999999999999999999999 999999999999999762
Q ss_pred hccchhhHHhhhhcccccccCCCch-HH---HHHHHccccCC-------------CeeEEEEecCCCeeeEEEEEEEecC
Q 022704 146 LDASHRDLRRARAAALNIVPTSTGA-AK---AVALVLPALKG-------------KLNGIALRVPTPNVSVVDLVVQVSK 208 (293)
Q Consensus 146 ~d~~~~d~r~~r~~a~NIIP~~tGa-~k---~~~kvlPeL~g-------------kv~~tavRVPV~~gs~~dltv~~~k 208 (293)
... ..+.+++|++|+++|. .| |+.|+|+.+++ +++++|+|||+++||++++++++++
T Consensus 209 ~~~------~~~~~~~N~~Py~~~~e~k~~~Ei~kiL~~l~~~~~~~~~~~~~~~~v~ft~~rVPv~rG~~~tv~v~l~~ 282 (381)
T 3hsk_A 209 PGV------SGMDILDNIVPYISGEEDKLEWETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFAN 282 (381)
T ss_dssp --C------CHHHHTTCCBCCCTTHHHHHHHHHHHHTCEECTTSSSEECCCTTTCEEEEECCBCSCSSCCEEEEEEEESS
T ss_pred CCc------chhhhhcChhhcccchHHHHHHHHHHHhhhcccccccccccccCCCceEEEEEEeceeccEEEEEEEEeCC
Confidence 111 1246899999999887 34 56789987665 8999999999999999999999999
Q ss_pred --cCcHHHHHHHHHHcccc
Q 022704 209 --KTFAEEVNAAFRESADN 225 (293)
Q Consensus 209 --~v~~eei~~~l~~a~~~ 225 (293)
+++.|||+++|+++..+
T Consensus 283 ~~~~t~eei~~~l~~~y~~ 301 (381)
T 3hsk_A 283 RPAPSVEDVKQCLREYECA 301 (381)
T ss_dssp SSCCCHHHHHHHHHHCBCH
T ss_pred CCCCCHHHHHHHHHHhhcc
Confidence 99999999999998643
No 39
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A
Probab=100.00 E-value=9.1e-35 Score=276.54 Aligned_cols=251 Identities=13% Similarity=0.074 Sum_probs=187.9
Q ss_pred CCCCCCceeE-----ECCE-EEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC----C-
Q 022704 16 TPPSASLKPM-----LNQL-VLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK----G- 84 (293)
Q Consensus 16 ~~~s~g~~~~-----f~g~-~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~----~- 84 (293)
..+|+||++. |+|+ ++.+..+. +.+.| .+++|+||+|+|.+.++++++.|+++|+ .|||++++ +
T Consensus 40 ~~~saGk~~~~~~p~~~~~~~~~v~~~~--~~~~~-~~~~Dvvf~a~p~~~s~~~~~~~~~~g~--~vIDlSa~fR~~d~ 114 (337)
T 3dr3_A 40 QSNDAGKLISDLHPQLKGIVELPLQPMS--DISEF-SPGVDVVFLATAHEVSHDLAPQFLEAGC--VVFDLSGAFRVNDA 114 (337)
T ss_dssp TCTTTTSBHHHHCGGGTTTCCCBEEEES--SGGGT-CTTCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTSSSCH
T ss_pred chhhcCCchHHhCccccCccceeEeccC--CHHHH-hcCCCEEEECCChHHHHHHHHHHHHCCC--EEEEcCCccccCCc
Confidence 4569999998 8885 66663320 22333 1789999999999999999999999999 56666552 1
Q ss_pred CCC------------------eEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhh--hcCccEE-EEeeecccccch
Q 022704 85 DIP------------------TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQ--KFGIIKG-TMTTTHSYTGDQ 143 (293)
Q Consensus 85 dvP------------------lvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~--~fgI~~~-~~TT~havsg~q 143 (293)
++| ..|||+|.+.++. .+|||||||+|+|++++|+||++ .|+++++ +|+|+|++||++
T Consensus 115 ~v~~~wy~~~~~~p~l~~~~vyglPEvn~~~i~~-~~iIanPgC~tt~~~l~L~PL~~~g~~~~~~i~~v~t~~g~SGaG 193 (337)
T 3dr3_A 115 TFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKE-ANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVINATSGVSGAG 193 (337)
T ss_dssp HHHHHHTSSCCSCHHHHHHCEECCTTTCCHHHHT-CSEEECCCHHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGC
T ss_pred ccchhhccccccChhhhcceEEEccccCHHHhCC-CCEEecCChHHHHHHHHHHHHHHcCccCCCceEEEEEeeccccCC
Confidence 232 2577779998864 68999999999999999999999 6999999 999999999994
Q ss_pred -hhhccchhhHHhhhhcccccccCCCchHHHHHHHccccCC----CeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHH
Q 022704 144 -RLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG----KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAA 218 (293)
Q Consensus 144 -~~~d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kvlPeL~g----kv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~ 218 (293)
++++..+.+.| |++|+..|. .+.+||+.+ +++++|+|||+++||+++++++++++++.|||+++
T Consensus 194 ~~~~~~~~~~~~-------n~~py~~~~----h~h~Pei~~~l~~~v~ft~~rvPv~rG~~~ti~~~l~~~~t~eev~~~ 262 (337)
T 3dr3_A 194 RKAAISNSFCEV-------SLQPYGVFT----HRHQPEIATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQA 262 (337)
T ss_dssp SCCCSTTSGGGC-------SEEECSTTT----CTHHHHHHHHHTSCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHH
T ss_pred cccccccccccc-------ceEccCccc----ceechhHHhhhcCCEEEEEEEecccccEEEEEEEEECCCCCHHHHHHH
Confidence 66675555433 999998876 345666655 99999999999999999999999999999999999
Q ss_pred HHHccc-ccccCcccccCCCceeccCCCCCceeeEeCCCceeeCCceEEEEEEeCC-CCchhhhHHHHHHHHhc
Q 022704 219 FRESAD-NELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDN-EWGYSQRVVDLADIVAN 290 (293)
Q Consensus 219 l~~a~~-~~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vkl~~WyDN-E~gys~r~~dl~~~~~~ 290 (293)
|+++-+ .++--++.-.+ |-. .+..|.-+..|- ...+++.+.+++..|| -+|=|-+-+..++.|-.
T Consensus 263 l~~~Y~~~p~V~v~~~~~-P~~-~~v~gtn~~~ig-----~~~~~~~l~~~~~~DNL~KGAAgqAVQ~~nlm~g 329 (337)
T 3dr3_A 263 LQQAYAHKPLVRLYDKGV-PAL-KNVVGLPFCDIG-----FAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFG 329 (337)
T ss_dssp HHHHHTTCTTEEECSSSC-CCG-GGTTTSSCEEEE-----EEEETTEEEEEEEECTTTTTTHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCEEECCCCC-CCH-HHhCCCCcEEEE-----EEEeCCEEEEEEEechHHHHHHHHHHHHHHHHhC
Confidence 998632 23323322111 322 245554443331 1111345668888999 67988888888888754
No 40
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=100.00 E-value=2.6e-34 Score=271.89 Aligned_cols=164 Identities=19% Similarity=0.203 Sum_probs=150.2
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCCCC-C-CeEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhh
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-I-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQ 124 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~~d-v-PlvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~ 124 (293)
.++|+|++|||.+.+.+.++.|+++| |+||+++|.+.| + |++|||||++.|+. ++||+||||+|+||+|++|+|++
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~~l~aG-k~Vi~sap~~~d~~~~~~v~~vn~~~~~~-~~ii~~~~C~t~~l~P~~~~l~~ 155 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEKADVAEVSFVAQANYEAALG-KNYVRVVSCNTTGLVRTLSAIRE 155 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTSCGGGSSEEECHHHHGGGGTT-CSEEEECCHHHHHHHHHHHHHGG
T ss_pred cCCCEEEECCCccccHHHHHHHHHcC-CceEeecccccccccceEEeccCHHHHhh-CCcEEecCcHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 568888887545 4 59999999998874 68999999999999999999998
Q ss_pred hcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccC---CCchHHHHHHHccccCCCeeEEEEecCCCeeeEEE
Q 022704 125 KFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT---STGAAKAVALVLPALKGKLNGIALRVPTPNVSVVD 201 (293)
Q Consensus 125 ~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~---~tGa~k~~~kvlPeL~gkv~~tavRVPV~~gs~~d 201 (293)
. |+++.|+|||++||.| |++|++++||+|+ .+|++++++|+|| |+ ++++|+||||++||+++
T Consensus 156 ~--I~~g~i~ti~a~s~~~----------~~~r~~~~niiP~i~~~~g~~~~i~~~l~-l~--l~~~~~rVPv~~~~~~~ 220 (334)
T 2czc_A 156 Y--ADYVYAVMIRRAADPN----------DTKRGPINAIKPTVEVPSHHGPDVQTVIP-IN--IETMAFVVPTTLMHVHS 220 (334)
T ss_dssp G--EEEEEEEEEEESSCTT----------CCSCCCSSCCEECCSSSCTHHHHHTTTSC-CC--EEEEEEEESCSSCEEEE
T ss_pred H--hccccEEEEEEecCcc----------ccccChhhcEEeccCCCCchhhhhheEEE-EE--EEEEEEEcCCCceEEEE
Confidence 7 9999999999999964 5678999999999 8999999999999 74 99999999999999999
Q ss_pred EEEEecCcCcHHHHHHHHHHcccccc
Q 022704 202 LVVQVSKKTFAEEVNAAFRESADNEL 227 (293)
Q Consensus 202 ltv~~~k~v~~eei~~~l~~a~~~~l 227 (293)
+++++++++++||++++|+++++..+
T Consensus 221 ~~~~~~~~~~~e~i~~~~~~~~~~~l 246 (334)
T 2czc_A 221 VMVELKKPLTKDDVIDIFENTTRVLL 246 (334)
T ss_dssp EEEEESSCCCHHHHHHHHHTSTTEEE
T ss_pred EEEEECCCCCHHHHHHHHHhccCCEe
Confidence 99999999999999999999986543
No 41
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-34 Score=274.14 Aligned_cols=249 Identities=13% Similarity=-0.029 Sum_probs=182.1
Q ss_pred CCCCceeE-----ECC-EEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC----C---
Q 022704 18 PSASLKPM-----LNQ-LVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK----G--- 84 (293)
Q Consensus 18 ~s~g~~~~-----f~g-~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~----~--- 84 (293)
.++|+++. |+| +.+.+ . +.+. |.++|+||+|+|.+.+++.++.|+++|+ .||+.+++ +
T Consensus 39 ~~~g~~~~~~~~~~~g~~~~~~---~--~~~~--~~~vDvV~~a~g~~~s~~~a~~~~~aG~--~VId~Sa~~r~~~~~~ 109 (345)
T 2ozp_A 39 RFAGEPVHFVHPNLRGRTNLKF---V--PPEK--LEPADILVLALPHGVFAREFDRYSALAP--VLVDLSADFRLKDPEL 109 (345)
T ss_dssp TTTTSBGGGTCGGGTTTCCCBC---B--CGGG--CCCCSEEEECCCTTHHHHTHHHHHTTCS--EEEECSSTTSCSCHHH
T ss_pred hhhCchhHHhCchhcCcccccc---c--chhH--hcCCCEEEEcCCcHHHHHHHHHHHHCCC--EEEEcCccccCCChHH
Confidence 46788887 777 55544 2 2222 5799999999999999999999999999 46666652 1
Q ss_pred ---------------CCCeEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCcc--EEEEeeecccccchh-hh
Q 022704 85 ---------------DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGII--KGTMTTTHSYTGDQR-LL 146 (293)
Q Consensus 85 ---------------dvPlvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~--~~~~TT~havsg~q~-~~ 146 (293)
+.|+.|||+|.+.++. .+|||||||+|+|++|+|+||+++|+|+ +++|+|+|++||+|+ .+
T Consensus 110 y~~~y~~h~~~e~l~~~vygvpE~n~~~i~~-~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~ 188 (345)
T 2ozp_A 110 YRRYYGEHPRPDLLGRFVYAVPELYREALKG-ADWIAGAGCNATATLLGLYPLLKAGVLKPTPIFVTLLISTSAGGAEAS 188 (345)
T ss_dssp HHHHHCCCSSGGGTTSSEECCHHHHHHHHHT-CSEEECCCHHHHHHHHHHHHHHHTTCBCSSCEEEEEEECSGGGCSSCC
T ss_pred HHhhhccccchhhhccCcEeccccCHHHhhc-CCEEeCCCcHHHHHHHHHHHHHHhcCCCCCeEEEEEEEEccccCcccc
Confidence 3566777779999875 6899999999999999999999999999 999999999999975 47
Q ss_pred ccchhhHHhhhhcccccccCCCchHHHHHHHccccC-----C-CeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHH
Q 022704 147 DASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK-----G-KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFR 220 (293)
Q Consensus 147 d~~~~d~r~~r~~a~NIIP~~tGa~k~~~kvlPeL~-----g-kv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~ 220 (293)
|+++.++ +..|++|+.+|. ++++||++ + +++++|+|||+++||+++++++++++++.|||+++|+
T Consensus 189 ~~~~~~~-----~~~n~~py~~~~----h~~~pei~~~l~~~~~v~~~~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~ 259 (345)
T 2ozp_A 189 PASHHPE-----RAGSIRVYKPTG----HRHTAEVVENLPGRPEVHLTAIATDRVRGILMTAQCFVQDGWSERDVWQAYR 259 (345)
T ss_dssp GGGCHHH-----HTTCCEEEECSC----CTHHHHHHHTSSSCCCEEEEEEECSCSSCEEEEEEEEBCTTCCHHHHHHHHH
T ss_pred ccccchh-----hccccccCCCCC----ccChHhHHHHhCCCCCeEEEEEEeccccEEEEEEEEEeCCCCCHHHHHHHHH
Confidence 7665443 578999999885 45555554 5 8999999999999999999999999999999999999
Q ss_pred Hcccc-cccCcccc--cC--CCceeccCCCCCceeeEeCCCceee-CCceEEEEEEeCCC-CchhhhHHHHHHHHhc
Q 022704 221 ESADN-ELKGILSV--CD--EPLVSVDFRCSDVSSTVDSSLTLVM-GDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 290 (293)
Q Consensus 221 ~a~~~-~lkgil~~--te--~~~VS~D~~~~~~s~i~d~~~t~~~-~~~~vkl~~WyDNE-~gys~r~~dl~~~~~~ 290 (293)
++.++ ++--+++- .+ -|-. .+..|.-+..|- . ... ..+.+.+++=-||= +|=|-+-+..++.|..
T Consensus 260 ~~y~~~~~v~v~~~~~~~~~~p~~-~~~~g~~~~~ig-~---~~d~~~~~~~~~~~~DNl~kGAAg~Avq~~nl~~g 331 (345)
T 2ozp_A 260 EAYAGEPFIRLVKQKKGVHRYPDP-RFVQGTNYADIG-F---ELEEDTGRLVVMTAIDNLVKGTAGHALQALNVRMG 331 (345)
T ss_dssp HHHTTCTTEEECCCSSSSCCSCCH-HHHTTSCCEEEE-E---EEETTTTEEEEEEEECTTTTTTHHHHHHHHHHHTT
T ss_pred HHhCCCCCEEEEeCCCCcCCCCCH-HHhcCCceEEEE-E---EEeCCCCEEEEEEEeccHHHHHHHHHHHHHHHHhC
Confidence 87653 22112100 00 1111 122332222221 0 011 12345566668995 5777777777777654
No 42
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.1e-33 Score=267.57 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=149.2
Q ss_pred CCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCCC----CCCCeEEecCCcCCCCC----------CCCeeeCCCcchh
Q 022704 48 TPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGK----GDIPTYVVGVNADAYKP----------DEPIISNASCTTN 113 (293)
Q Consensus 48 ~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps~----~dvPlvVpgVN~~~~~~----------~~~IISn~sCtTn 113 (293)
++|+||+|+|.+.+++.++.|+++|+ .|||++++ +++|++|||||++.|.. ..+|||||||+|+
T Consensus 83 ~~DvV~~atp~~~~~~~a~~~~~aG~--~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~~iIanpgC~tt 160 (354)
T 1ys4_A 83 DVDIVFSALPSDLAKKFEPEFAKEGK--LIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTI 160 (354)
T ss_dssp TCCEEEECCCHHHHHHHHHHHHHTTC--EEEECCSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCCSSEEEECCCHHHH
T ss_pred CCCEEEECCCchHHHHHHHHHHHCCC--EEEECCchhcCCCCCCccCcccCHHHhcChhhhhhhcccCCeEEECCCHHHH
Confidence 89999999999999999999999999 58999883 46899999999998863 2359999999999
Q ss_pred hhhhHHHHHhhhcCccEEEEeeecccccchhhhccchhhHHhhhhcccccccCCCch-HH---HHHHHccccCC------
Q 022704 114 CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA-AK---AVALVLPALKG------ 183 (293)
Q Consensus 114 ~lap~lk~L~~~fgI~~~~~TT~havsg~q~~~d~~~~d~r~~r~~a~NIIP~~tGa-~k---~~~kvlPeL~g------ 183 (293)
|++|+|+||+++|||++++|+|+|++||+|+. ..+ .+.+++|++|+++|. .| |+.++|+++.|
T Consensus 161 ~~~l~l~pL~~~~gi~~~~v~t~~~~SGaG~~--~~~-----~~~~~~ni~py~~~~~~k~~~Ei~~~l~~~~g~~~~~~ 233 (354)
T 1ys4_A 161 CAVITLKPIMDKFGLEAVFIATMQAVSGAGYN--GVP-----SMAILDNLIPFIKNEEEKMQTESLKLLGTLKDGKVELA 233 (354)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEEBCSGGGCTT--TSC-----HHHHTTCCBSCCTTHHHHHHHHHHHHTSEEETTEEECC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEEEcCcCCcc--ccc-----chHHhCCEEeccCchhhHHHHHHHHHHhccccccccCC
Confidence 99999999999999999999999999999876 222 246899999999985 44 55677887655
Q ss_pred --CeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHccc
Q 022704 184 --KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 224 (293)
Q Consensus 184 --kv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~ 224 (293)
+++++|+|||+++||+++++++++++++.|||+++|+++..
T Consensus 234 ~~~v~~~~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~~~ 276 (354)
T 1ys4_A 234 NFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDP 276 (354)
T ss_dssp CCEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHCCT
T ss_pred CceEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhc
Confidence 89999999999999999999999999999999999999874
No 43
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A
Probab=99.97 E-value=4.5e-31 Score=252.35 Aligned_cols=257 Identities=12% Similarity=-0.019 Sum_probs=184.8
Q ss_pred CCCceeE-----ECC-EEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC--CC-C----
Q 022704 19 SASLKPM-----LNQ-LVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG--KG-D---- 85 (293)
Q Consensus 19 s~g~~~~-----f~g-~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps--~~-d---- 85 (293)
|+|+++. |++ +.+.+.. .+.+. |.++|+||+|+|.+.+++.++.+ ++|++.|.+|++. ++ +
T Consensus 50 ~agk~~~~~~~~l~~~~~~~~~~---~~~~~--~~~~DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~R~~~~~~~~~ 123 (352)
T 2nqt_A 50 SAGSTLGEHHPHLTPLAHRVVEP---TEAAV--LGGHDAVFLALPHGHSAVLAQQL-SPETLIIDCGADFRLTDAAVWER 123 (352)
T ss_dssp CTTSBGGGTCTTCGGGTTCBCEE---CCHHH--HTTCSEEEECCTTSCCHHHHHHS-CTTSEEEECSSTTTCSCHHHHHH
T ss_pred cCCCchhhhcccccccceeeecc---CCHHH--hcCCCEEEECCCCcchHHHHHHH-hCCCEEEEECCCccCCcchhhhh
Confidence 6788776 554 3444422 22223 56899999999999999999999 9998433334444 22 3
Q ss_pred ---------CCeEEecC--CcCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCcc-EEEEeeecccccc-hhhhccchhh
Q 022704 86 ---------IPTYVVGV--NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGII-KGTMTTTHSYTGD-QRLLDASHRD 152 (293)
Q Consensus 86 ---------vPlvVpgV--N~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~-~~~~TT~havsg~-q~~~d~~~~d 152 (293)
.|+.|||+ |.+.++ ..+|||||||+|+|++++|+||+++++|+ +++|+|+|++||+ ++.++..+.+
T Consensus 124 ~y~~~h~~~~vyglPEv~~n~~~i~-~~~iIanPgC~tt~~~lal~PL~~~~~i~~~i~v~t~~g~SGaG~~~~~~~~~~ 202 (352)
T 2nqt_A 124 FYGSSHAGSWPYGLPELPGARDQLR-GTRRIAVPGCYPTAALLALFPALAADLIEPAVTVVAVSGTSGAGRAATTDLLGA 202 (352)
T ss_dssp HHSSCCCCCCCBSCTTSTTHHHHHT-TCSEEECCCHHHHHHHHHHHHHHHTTCSCSEEEEEEEECGGGGCSSCCGGGSHH
T ss_pred hccccCCCCeeEEecccccCHHHHh-cCCEEEcCCHHHHHHHHHHHHHHHcCCCcceEEEEEEeccccCCccccccccHH
Confidence 28999999 999987 46899999999999999999999999999 9999999999999 8888877777
Q ss_pred HHhhhhccccccc-CCC--chHHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHHHHHHcccc-ccc
Q 022704 153 LRRARAAALNIVP-TST--GAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN-ELK 228 (293)
Q Consensus 153 ~r~~r~~a~NIIP-~~t--Ga~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~~l~~a~~~-~lk 228 (293)
.++++..++|++| +.- -...+++|++. .+++++++|+|||+++||+++++++++++ .|||+++|+++-++ ++-
T Consensus 203 ~~~~~~~ay~~~~~h~h~pEi~~e~~ki~~-~~~~v~ft~~rvP~~rG~~~ti~~~l~~~--~~ei~~~~~~~y~~~~~V 279 (352)
T 2nqt_A 203 EVIGSARAYNIAGVHRHTPEIAQGLRAVTD-RDVSVSFTPVLIPASRGILATCTARTRSP--LSQLRAAYEKAYHAEPFI 279 (352)
T ss_dssp HHTTCCEECSTTTTSTTHHHHHHHHHTTCS-SCCEEEEEEEECSCSSCEEEEEEEECCSC--HHHHHHHHHHHHTTCTTE
T ss_pred HHhhhcccccCCCcceecHHHHHHHHHHhC-CCCCEEEEEEEEccccEEEEEEEEEECCC--HHHHHHHHHHhhCCCCCE
Confidence 8888888999999 541 11234567765 36799999999999999999999999988 99999999986322 222
Q ss_pred CcccccCCCceeccCCCCCceeeEeCCCceee-CCceEEEEEEeCCC-CchhhhHHHHHHHHhc
Q 022704 229 GILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM-GDDMVKVIAWYDNE-WGYSQRVVDLADIVAN 290 (293)
Q Consensus 229 gil~~te~~~VS~D~~~~~~s~i~d~~~t~~~-~~~~vkl~~WyDNE-~gys~r~~dl~~~~~~ 290 (293)
-++.-.+-|- -.+..|.-+..|- . ... .++.+.+++=-||= +|=|-+-+..++.|..
T Consensus 280 ~v~~~~~~p~-~~~v~g~n~~~ig-~---~~d~~~~~l~~~~~~DNL~KGAAg~AVQ~~nl~~g 338 (352)
T 2nqt_A 280 YLMPEGQLPR-TGAVIGSNAAHIA-V---AVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLALG 338 (352)
T ss_dssp EECCTTCCCC-GGGTTTSSCEEEE-E---EEETTTTEEEEEEEECTTTTTTHHHHHHHHHHHHT
T ss_pred EEeCCCCCcC-hHHhcCCcEEEEE-E---EEeCCCCEEEEEEEEcchhHhHHHHHHHHHHHHhC
Confidence 2221111111 1144443333331 0 011 22345566668995 5777777777776643
No 44
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=99.94 E-value=1.8e-28 Score=234.39 Aligned_cols=261 Identities=13% Similarity=0.028 Sum_probs=180.6
Q ss_pred CcccCccccCCCCCCCCCCceeE-----ECCEEEEEEEeecccccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcEE
Q 022704 3 PEVSSRPLTSSSTTPPSASLKPM-----LNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVL 77 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~s~g~~~~-----f~g~~~~v~~~~~~~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkVV 77 (293)
|++.-+.++|. -||||++. |+ +++.++ +.+.+.| ++++|+||+|+|...++++++.+ +|+ +|
T Consensus 37 P~~el~~l~S~----~~aG~~~~~~~p~~~-~~l~~~---~~~~~~~-~~~~Dvvf~alp~~~s~~~~~~~--~g~--~V 103 (351)
T 1vkn_A 37 PEAKITYLSSR----TYAGKKLEEIFPSTL-ENSILS---EFDPEKV-SKNCDVLFTALPAGASYDLVREL--KGV--KI 103 (351)
T ss_dssp TTEEEEEEECS----TTTTSBHHHHCGGGC-CCCBCB---CCCHHHH-HHHCSEEEECCSTTHHHHHHTTC--CSC--EE
T ss_pred CCcEEEEEeCc----ccccCChHHhChhhc-cCceEE---eCCHHHh-hcCCCEEEECCCcHHHHHHHHHh--CCC--EE
Confidence 44444455553 38999999 87 666552 2223333 37899999999999999999988 888 89
Q ss_pred ecCCCC----C-CC-----------------CeEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhhhcCcc--EEEE
Q 022704 78 ITAPGK----G-DI-----------------PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGII--KGTM 133 (293)
Q Consensus 78 Is~ps~----~-dv-----------------PlvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~~fgI~--~~~~ 133 (293)
||++++ + ++ |+.+||+|.+.++. .+||+||||+|++++++|+||+++++|+ ++++
T Consensus 104 IDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n~e~i~~-a~iIANPgC~~t~~~laL~PL~~~~~i~~~~iiv 182 (351)
T 1vkn_A 104 IDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIKN-AQVVGNPGCYPTSVILALAPALKHNLVDPETILV 182 (351)
T ss_dssp EESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHTT-CSEEECCCHHHHHHHHHHHHHHHTTCSCCSEEEE
T ss_pred EECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccCHHHhcc-CCEEeCCChHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 999983 2 32 88899999998874 5899999999999999999999999999 9999
Q ss_pred eeecccccchh-hhccchhhHHhhhhcccccccCCCch-------HHHHHHHccccCCCeeEEEEecCCCeeeEEEEEEE
Q 022704 134 TTTHSYTGDQR-LLDASHRDLRRARAAALNIVPTSTGA-------AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQ 205 (293)
Q Consensus 134 TT~havsg~q~-~~d~~~~d~r~~r~~a~NIIP~~tGa-------~k~~~kvlPeL~gkv~~tavRVPV~~gs~~dltv~ 205 (293)
+|||++||+++ .+++.+.. .+..|+.|...+. .++++|++.. ..+++.+|+|||+++||++.++++
T Consensus 183 ~t~sgvSGAG~~~~~~~~~~-----e~~~n~~~y~~~~h~h~pEi~~el~~i~~~-~~~v~ftp~rvPv~rG~~~tv~v~ 256 (351)
T 1vkn_A 183 DAKSGVSGAGRKEKVDYLFS-----EVNESLRPYNVAKHRHVPEMEQELGKISGK-KVNVVFTPHLVPMTRGILSTIYVK 256 (351)
T ss_dssp EEEEEGGGGCSCCSGGGBHH-----HHTTCCEECSCSCCTHHHHHHHHHHHHHTS-CCEEEEEEEEESSSSCEEEEEEEE
T ss_pred EEEeeccccCcccccccchh-----HHhcccccCCccccccHHHHHHHHHHhhCC-CCCEEEEEEEeccccEEEEEEEEE
Confidence 99999999965 55544322 2345666666442 2345666642 458999999999999999999999
Q ss_pred ecCcCcHHHHHHHHHHcccc-cccCcccccCCCceeccCCCCCceeeEeCCCceee-CCceEEEEEEeCCC-CchhhhHH
Q 022704 206 VSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM-GDDMVKVIAWYDNE-WGYSQRVV 282 (293)
Q Consensus 206 ~~k~v~~eei~~~l~~a~~~-~lkgil~~te~~~VS~D~~~~~~s~i~d~~~t~~~-~~~~vkl~~WyDNE-~gys~r~~ 282 (293)
++ ++.+|++++|+++-++ ++--++.-.+-|-. .+..|.-+..|- . ... ..+.+.+++=-||= +|=|-+-+
T Consensus 257 l~--~~~eei~~~l~~~Y~~~pfV~v~~~~~~P~~-~~v~gtn~~~Ig-~---~~d~~~~~l~~~s~~DNL~KGAAgqAV 329 (351)
T 1vkn_A 257 TD--KSLEEIHEAYLEFYKNEPFVHVLPMGIYPST-KWCYGSNHVFIG-M---QMEERTNTLILMSAIDNLVKGASGQAV 329 (351)
T ss_dssp CS--SCHHHHHHHHHHHHTTCTTEEECCTTCCCCG-GGGTTSSCEEEE-E---EEETTTTEEEEEEEECTTTTTTHHHHH
T ss_pred Ec--CCHHHHHHHHHHhhCCCCCEEEeCCCCCcCh-HHhcCCceEEEE-E---EEcCCCCEEEEEEEcccHHHhHHHHHH
Confidence 98 8999999999975321 22222211111211 122333222221 0 111 12334455558995 57777777
Q ss_pred HHHHHHhc
Q 022704 283 DLADIVAN 290 (293)
Q Consensus 283 dl~~~~~~ 290 (293)
..++.|..
T Consensus 330 Qn~nlm~G 337 (351)
T 1vkn_A 330 QNMNIMFG 337 (351)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 77776643
No 45
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=97.78 E-value=1.3e-05 Score=74.78 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=98.7
Q ss_pred CCCCcEEEeccCCCCCHhhHHHHHHc--CCCcEEecCCCCCCCCeEEecCCcCCCCC--CCCeeeCCCcchhhhhhHHHH
Q 022704 46 TATPSISPGGTGVFVDREGAGKHIQA--GAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCLAPFVKV 121 (293)
Q Consensus 46 ~~~~DivlestG~~~s~~~a~~hl~a--GakkVVIs~ps~~dvPlvVpgVN~~~~~~--~~~IISn~sCtTn~lap~lk~ 121 (293)
|.++|+||+|||.....+.+..++++ |. .||+....--.|..++++|.+.+.. ...++++++|.+ .|++..
T Consensus 69 ~~~iDvV~~atp~~~h~~~a~~al~a~~Gk--~Vi~ekp~~~g~~~~p~v~~~~~~~~~~~~lva~~g~~~---ipl~~a 143 (312)
T 1nvm_B 69 FADIDFVFDATSASAHVQNEALLRQAKPGI--RLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTCGGQAT---IPMVAA 143 (312)
T ss_dssp GGGEEEEEECSCHHHHHHHHHHHHHHCTTC--EEEECSTTCSSCBCCHHHHTTTTTTCSEEECCCHHHHHH---HHHHHH
T ss_pred CCCCcEEEECCChHHHHHHHHHHHHhCCCC--EEEEcCcccccccccCccCHHHHHhccCCcEEEeCCccc---chHHHH
Confidence 46899999999999999999999999 87 5665443223578889999888643 235888888865 455555
Q ss_pred HhhhcCccEE-EEeeecccccch---hhhccchhhHH-----h--------------------hhhcccccccCCC--ch
Q 022704 122 LDQKFGIIKG-TMTTTHSYTGDQ---RLLDASHRDLR-----R--------------------ARAAALNIVPTST--GA 170 (293)
Q Consensus 122 L~~~fgI~~~-~~TT~havsg~q---~~~d~~~~d~r-----~--------------------~r~~a~NIIP~~t--Ga 170 (293)
+.+.|..... .+.++++.+... ..++...+... . -|+.++|.+|..+ +.
T Consensus 144 ~~~~~~~~~~~iv~~i~sgs~G~~~~~~l~e~~~~~~~ai~~~gg~~~~k~il~~~p~~~p~~~~~tv~~~~~~~~~~~~ 223 (312)
T 1nvm_B 144 VSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAV 223 (312)
T ss_dssp HHTTSCEEEEEEEEEEEGGGSCHHHHTCHHHHHHHHHHHHHHTTCCSSEEEEEEEECCSSCCCEEEEEEEEESSCCHHHH
T ss_pred hhhhccchhHhHhhhhhccccCCCcccchhhHHHHHHHHHHHhhhccCCCcEEEEecCCCCcccceeEEEEeCCCCHHHH
Confidence 6666654432 678887766321 11232211000 0 1347777777332 33
Q ss_pred HH-------HHHHHccccCCCeeEE--------EEecCCCe---eeEEEEEEEecCc
Q 022704 171 AK-------AVALVLPALKGKLNGI--------ALRVPTPN---VSVVDLVVQVSKK 209 (293)
Q Consensus 171 ~k-------~~~kvlPeL~gkv~~t--------avRVPV~~---gs~~dltv~~~k~ 209 (293)
.+ +++|++|..+.+.... .+++|-+. |..+.+.++++-.
T Consensus 224 ~~~~~~m~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (312)
T 1nvm_B 224 AASVAEMVQAVQAYVPGYRLKQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVEGA 280 (312)
T ss_dssp HHHHHHHHHHHHTTCTTEEESSCCEEEEECTTSCEEETTTEEECEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCcCCCceEEeccCCCcccccCccccCCCEEEEEEEEecC
Confidence 44 4455666543343322 24677663 8888999998754
No 46
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=70.97 E-value=2.4 Score=31.46 Aligned_cols=34 Identities=18% Similarity=0.005 Sum_probs=28.2
Q ss_pred CCCCcEEEeccCCCCCHhhHHHHHHcCCCcEEec
Q 022704 46 TATPSISPGGTGVFVDREGAGKHIQAGAKKVLIT 79 (293)
Q Consensus 46 ~~~~DivlestG~~~s~~~a~~hl~aGakkVVIs 79 (293)
+.++|+||.|+|.......+..+++.|++++.++
T Consensus 67 ~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 67 LGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLT 100 (118)
T ss_dssp TTTCSEEEECSCGGGHHHHHHHHHHTTCEEECCC
T ss_pred HcCCCEEEECCCchhhHHHHHHHHHhCCCEEEec
Confidence 4689999999998888888888999999665544
No 47
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=43.54 E-value=7.6 Score=34.97 Aligned_cols=36 Identities=6% Similarity=-0.144 Sum_probs=28.6
Q ss_pred cccccCCCCCcEEEeccCCCCCHhhHHHHHHcCCCcE
Q 022704 40 SSRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKV 76 (293)
Q Consensus 40 ~~~~f~~~~~DivlestG~~~s~~~a~~hl~aGakkV 76 (293)
+.+.+- +..|+|+||++...-++++.+.|++|+.-|
T Consensus 53 d~d~ll-a~pD~VVe~A~~~av~e~~~~iL~aG~dvv 88 (253)
T 1j5p_A 53 DEFQVP-SDVSTVVECASPEAVKEYSLQILKNPVNYI 88 (253)
T ss_dssp SSCCCC-TTCCEEEECSCHHHHHHHHHHHTTSSSEEE
T ss_pred CHHHHh-hCCCEEEECCCHHHHHHHHHHHHHCCCCEE
Confidence 344453 588999999999887788999999998533
No 48
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=39.92 E-value=20 Score=32.51 Aligned_cols=35 Identities=11% Similarity=-0.128 Sum_probs=29.1
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
.++|+|+.||......+.+..++++|. .||++.|.
T Consensus 57 ~~~DvViiatp~~~h~~~~~~al~aG~-~Vv~ekp~ 91 (320)
T 1f06_A 57 DDVDVLFLCMGSATDIPEQAPKFAQFA-CTVDTYDN 91 (320)
T ss_dssp TTCSEEEECSCTTTHHHHHHHHHTTTS-EEECCCCC
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHHCCC-EEEECCCC
Confidence 689999999999988889999999985 46666654
No 49
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=36.40 E-value=39 Score=26.55 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=33.4
Q ss_pred CeeEEEEecCCCeeeEEEEEEEecCcCcHHHHHH-HHHHcccccccCcccccCCCc
Q 022704 184 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNA-AFRESADNELKGILSVCDEPL 238 (293)
Q Consensus 184 kv~~tavRVPV~~gs~~dltv~~~k~v~~eei~~-~l~~a~~~~lkgil~~te~~~ 238 (293)
.+.-.|+ .| ||-. +++++.+.+++.+|++ ++++|.+-||-+.|+=.++-+
T Consensus 19 ~v~v~~L-lP--nGi~--i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~ 69 (108)
T 2v1y_A 19 RILVECL-LP--NGMI--VTLECLREATLITIKHELFKEARKYPLHQLLQDESSYI 69 (108)
T ss_dssp EEEEEEE-CT--TSCE--EEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCE
T ss_pred cEEEEEE-cC--cEEE--EEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceE
Confidence 4555554 34 5644 5555678899999998 778887778877766444443
No 50
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=33.69 E-value=19 Score=30.89 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=49.8
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecC-CCCCCCCeEEecCCcCCCCCCCCeeeCCCcchhhhhhHHHHHhhh
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITA-PGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQK 125 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~-ps~~dvPlvVpgVN~~~~~~~~~IISn~sCtTn~lap~lk~L~~~ 125 (293)
.++|+|++|++.....+.+..++++|. .||+. |...+.+-...++-...-+....++-.++++.. ...++....
T Consensus 49 ~~~DvVv~~~~~~~~~~~~~~~l~~G~--~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~--~~~~~~~~~- 123 (236)
T 2dc1_A 49 REMDVAVEAASQQAVKDYAEKILKAGI--DLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGG--LDAIFSASE- 123 (236)
T ss_dssp SCCSEEEECSCHHHHHHHHHHHHHTTC--EEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSC--HHHHHHTGG-
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCC--cEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccC--hHHHHHhhc-
Confidence 589999999999988899999999997 55543 321111100001100000012233444444433 244554443
Q ss_pred cCccEEEEeeeccc
Q 022704 126 FGIIKGTMTTTHSY 139 (293)
Q Consensus 126 fgI~~~~~TT~hav 139 (293)
|++++.++++|+.
T Consensus 124 -~~~~~~~~~~~~~ 136 (236)
T 2dc1_A 124 -LIEEIVLTTRKNW 136 (236)
T ss_dssp -GEEEEEEEEEEEG
T ss_pred -cccEEEEEEEcCh
Confidence 8999999998875
No 51
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=32.09 E-value=33 Score=30.67 Aligned_cols=35 Identities=14% Similarity=-0.090 Sum_probs=28.5
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
.++|+|+.||......+.+..++++| |.|++..|.
T Consensus 70 ~~~D~V~i~tp~~~h~~~~~~al~~G-~~v~~eKp~ 104 (346)
T 3cea_A 70 ENIDAIFIVAPTPFHPEMTIYAMNAG-LNVFCEKPL 104 (346)
T ss_dssp SCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSCC
T ss_pred CCCCEEEEeCChHhHHHHHHHHHHCC-CEEEEcCCC
Confidence 37999999999998889999999998 456664443
No 52
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=30.17 E-value=42 Score=30.35 Aligned_cols=35 Identities=20% Similarity=0.057 Sum_probs=30.3
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 66 ~~vD~V~i~tp~~~H~~~~~~al~aG-khV~~EKPl 100 (352)
T 3kux_A 66 PSIDLIVIPTPNDTHFPLAQSALAAG-KHVVVDKPF 100 (352)
T ss_dssp SSCCEEEECSCTTTHHHHHHHHHHTT-CEEEECSSC
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEECCC
Confidence 46999999999999999999999999 568876663
No 53
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=29.75 E-value=8.1 Score=24.06 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=11.8
Q ss_pred eCCceEEEEEEeCCCCc
Q 022704 260 MGDDMVKVIAWYDNEWG 276 (293)
Q Consensus 260 ~~~~~vkl~~WyDNE~g 276 (293)
+.+..-|+.--|||||-
T Consensus 17 vedskpk~sihfdnewp 33 (36)
T 1o9a_B 17 VEDSKPKLSIHFDNEWP 33 (36)
T ss_dssp CCCSCCCCBCCCCCCCS
T ss_pred eecCCcceEEeccCcCC
Confidence 33445677777999994
No 54
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=29.47 E-value=34 Score=31.38 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=24.8
Q ss_pred CCCcEEEeccCCC----CCHhhHHHHHHcCCCcEEec
Q 022704 47 ATPSISPGGTGVF----VDREGAGKHIQAGAKKVLIT 79 (293)
Q Consensus 47 ~~~DivlestG~~----~s~~~a~~hl~aGakkVVIs 79 (293)
..+|+|++||+.. ...+++..++++|. -|++
T Consensus 85 ~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGk--hVvt 119 (331)
T 3c8m_A 85 RDFDIVVDATPASADGKKELAFYKETFENGK--DVVT 119 (331)
T ss_dssp SSCSEEEECSCCCSSSHHHHHHHHHHHHTTC--EEEE
T ss_pred CCCCEEEECCCCCCccchHHHHHHHHHHCCC--eEEe
Confidence 4789999999986 55678889999986 4554
No 55
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=28.78 E-value=44 Score=30.41 Aligned_cols=35 Identities=26% Similarity=0.162 Sum_probs=30.2
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 64 ~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPl 98 (358)
T 3gdo_A 64 PAIELVIVTTPSGLHYEHTMACIQAG-KHVVMEKPM 98 (358)
T ss_dssp TTCCEEEECSCTTTHHHHHHHHHHTT-CEEEEESSC
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHcC-CeEEEecCC
Confidence 47999999999999999999999999 567776653
No 56
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=28.78 E-value=42 Score=31.94 Aligned_cols=31 Identities=13% Similarity=0.055 Sum_probs=24.0
Q ss_pred CcEEEeccCCCCCHhhHHHHHHcCCCcEEecC
Q 022704 49 PSISPGGTGVFVDREGAGKHIQAGAKKVLITA 80 (293)
Q Consensus 49 ~DivlestG~~~s~~~a~~hl~aGakkVVIs~ 80 (293)
+|+|+++++.+.-.+.+-.++++| |+|+..|
T Consensus 94 iDvVV~ai~G~aGl~ptlaAi~aG-K~VvlAN 124 (388)
T 1r0k_A 94 ADWTMAAIIGCAGLKATLAAIRKG-KTVALAN 124 (388)
T ss_dssp CSEEEECCCSGGGHHHHHHHHHTT-SEEEECC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHCC-CEEEEeC
Confidence 899999995566778888899998 4555543
No 57
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=27.41 E-value=16 Score=29.32 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcccccccCcccccCCC
Q 022704 212 AEEVNAAFRESADNELKGILSVCDEP 237 (293)
Q Consensus 212 ~eei~~~l~~a~~~~lkgil~~te~~ 237 (293)
.+|+.+.+++..|...+|++-|++|+
T Consensus 72 p~eVdkm~~k~~q~~~dGl~iYCDde 97 (126)
T 2rbg_A 72 KNEVDIFLKNLEKSEVDGLLVYCDDE 97 (126)
T ss_dssp GGGHHHHHHHHTTCCCCEEEEEECGG
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 37888999999888999999999886
No 58
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=25.68 E-value=50 Score=29.86 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=29.8
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 64 ~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~EKP~ 98 (349)
T 3i23_A 64 PEIELITICTPAHTHYDLAKQAILAG-KSVIVEKPF 98 (349)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHcC-CEEEEECCC
Confidence 46999999999999999999999999 567775553
No 59
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=25.20 E-value=52 Score=29.50 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=30.3
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++..|.
T Consensus 64 ~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~ 98 (344)
T 3euw_A 64 DDIDGIVIGSPTSTHVDLITRAVERG-IPALCEKPI 98 (344)
T ss_dssp SCCCEEEECSCGGGHHHHHHHHHHTT-CCEEECSCS
T ss_pred CCCCEEEEeCCchhhHHHHHHHHHcC-CcEEEECCC
Confidence 47999999999999999999999999 568886664
No 60
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=24.51 E-value=71 Score=29.06 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=29.3
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 82 ~~iD~V~i~tp~~~h~~~~~~al~~G-k~V~~EKP~ 116 (383)
T 3oqb_A 82 KNDTMFFDAATTQARPGLLTQAINAG-KHVYCEKPI 116 (383)
T ss_dssp SSCCEEEECSCSSSSHHHHHHHHTTT-CEEEECSCS
T ss_pred CCCCEEEECCCchHHHHHHHHHHHCC-CeEEEcCCC
Confidence 46999999999999999999999999 456664443
No 61
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=23.57 E-value=59 Score=28.98 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=30.0
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++-.|.
T Consensus 62 ~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~ 96 (331)
T 4hkt_A 62 ADIDAVVICTPTDTHADLIERFARAG-KAIFCEKPI 96 (331)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred CCCCEEEEeCCchhHHHHHHHHHHcC-CcEEEecCC
Confidence 37999999999999999999999999 567776664
No 62
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=23.15 E-value=82 Score=25.73 Aligned_cols=34 Identities=9% Similarity=-0.117 Sum_probs=24.3
Q ss_pred CCCCcEEEeccCCCC----------CHhhHHHHHHcCCCcEEec
Q 022704 46 TATPSISPGGTGVFV----------DREGAGKHIQAGAKKVLIT 79 (293)
Q Consensus 46 ~~~~DivlestG~~~----------s~~~a~~hl~aGakkVVIs 79 (293)
++++|+||.++|... +...++.+.++|.+++|..
T Consensus 61 ~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~ 104 (219)
T 3dqp_A 61 LHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILL 104 (219)
T ss_dssp TTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEE
Confidence 578999999999764 2234556667788877753
No 63
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=23.01 E-value=60 Score=29.06 Aligned_cols=35 Identities=26% Similarity=0.056 Sum_probs=30.1
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++-.|.
T Consensus 66 ~~~D~V~i~tp~~~h~~~~~~al~~g-k~vl~EKP~ 100 (330)
T 3e9m_A 66 ETIDIIYIPTYNQGHYSAAKLALSQG-KPVLLEKPF 100 (330)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHTT-CCEEECSSC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 47999999999999999999999999 558886664
No 64
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=22.88 E-value=65 Score=29.01 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=30.0
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++-.|.
T Consensus 65 ~~~D~V~i~tp~~~h~~~~~~al~~g-k~vl~EKP~ 99 (354)
T 3db2_A 65 EDVEMVIITVPNDKHAEVIEQCARSG-KHIYVEKPI 99 (354)
T ss_dssp SSCCEEEECSCTTSHHHHHHHHHHTT-CEEEEESSS
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcC-CEEEEccCC
Confidence 57999999999999999999999999 557776664
No 65
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=22.65 E-value=62 Score=29.03 Aligned_cols=35 Identities=17% Similarity=-0.038 Sum_probs=30.0
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 65 ~~~D~V~i~tp~~~h~~~~~~al~~G-k~vl~EKP~ 99 (344)
T 3mz0_A 65 ENVDAVLVTSWGPAHESSVLKAIKAQ-KYVFCEKPL 99 (344)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred CCCCEEEECCCchhHHHHHHHHHHCC-CcEEEcCCC
Confidence 46899999999999999999999999 567776664
No 66
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=22.26 E-value=60 Score=30.37 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=45.8
Q ss_pred CcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC--CCCCCeEEecCCcCCCCC-----CCCeeeCCCcchhhhhhHHHH
Q 022704 49 PSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG--KGDIPTYVVGVNADAYKP-----DEPIISNASCTTNCLAPFVKV 121 (293)
Q Consensus 49 ~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps--~~dvPlvVpgVN~~~~~~-----~~~IISn~sCtTn~lap~lk~ 121 (293)
+|+|+.|+|.+.....+..++++|+. +++.+. .++...+.++-- ..+.. ...++.+..|--......+..
T Consensus 77 ~DvVin~ag~~~~~~v~~a~l~~g~~--vvD~a~~~~~~~~~~~~~~~-~~l~~~a~~aG~~~i~g~G~~PG~~~l~a~~ 153 (405)
T 4ina_A 77 PQIVLNIALPYQDLTIMEACLRTGVP--YLDTANYEHPDLAKFEYKEQ-WAFHDRYKEKGVMALLGSGFDPGVTNVFCAY 153 (405)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHHTCC--EEESSCCBCTTCSCBCSHHH-HTTHHHHHHHTCEEEECCBTTTBHHHHHHHH
T ss_pred CCEEEECCCcccChHHHHHHHHhCCC--EEEecCCCCcccchhhhHHH-HHHHHHHHHhCCEEEEcCCCCccHHHHHHHH
Confidence 89999999998877888899999985 343222 111111111100 01211 234677776655555455555
Q ss_pred Hhhh-cC-ccEEEE
Q 022704 122 LDQK-FG-IIKGTM 133 (293)
Q Consensus 122 L~~~-fg-I~~~~~ 133 (293)
+.++ |+ ++.+.+
T Consensus 154 ~~~~~~~~i~~i~i 167 (405)
T 4ina_A 154 AQKHYFDEIHEIDI 167 (405)
T ss_dssp HHHHTCSEEEEEEE
T ss_pred HHHhccCcccEEEE
Confidence 5553 54 566655
No 67
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=22.13 E-value=66 Score=31.02 Aligned_cols=34 Identities=21% Similarity=0.067 Sum_probs=28.0
Q ss_pred CCCcEEEeccCC-CCCHhhHHHHHHcCCCcEEecCC
Q 022704 47 ATPSISPGGTGV-FVDREGAGKHIQAGAKKVLITAP 81 (293)
Q Consensus 47 ~~~DivlestG~-~~s~~~a~~hl~aGakkVVIs~p 81 (293)
..+|+|++|||. ....+++..++++|. .||..+|
T Consensus 77 ~diDvVve~tp~~~~h~~~~~~AL~aGK-hVvtenk 111 (444)
T 3mtj_A 77 PEIDIVVELIGGLEPARELVMQAIANGK-HVVTANK 111 (444)
T ss_dssp TTCCEEEECCCSSTTHHHHHHHHHHTTC-EEEECCH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHcCC-EEEECCc
Confidence 578999999996 778899999999995 4665566
No 68
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=21.71 E-value=63 Score=29.00 Aligned_cols=35 Identities=14% Similarity=-0.045 Sum_probs=29.7
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 63 ~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EKP~ 97 (344)
T 3ezy_A 63 PNVDAVLVCSSTNTHSELVIACAKAK-KHVFCEKPL 97 (344)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESCS
T ss_pred CCCCEEEEcCCCcchHHHHHHHHhcC-CeEEEECCC
Confidence 47999999999998889999999999 567776663
No 69
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=21.64 E-value=51 Score=29.20 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=29.3
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+.||......+.+..++++|. .|++--|.
T Consensus 64 ~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKPl 98 (294)
T 1lc0_A 64 QEIDVAYICSESSSHEDYIRQFLQAGK-HVLVEYPM 98 (294)
T ss_dssp SSEEEEEECSCGGGHHHHHHHHHHTTC-EEEEESCS
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHHCCC-cEEEeCCC
Confidence 479999999999999999999999984 57665553
No 70
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=21.56 E-value=62 Score=28.89 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=30.3
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 65 ~~vD~V~i~tp~~~H~~~~~~al~~G-khVl~EKP~ 99 (334)
T 3ohs_X 65 PNVEVAYVGTQHPQHKAAVMLCLAAG-KAVLCEKPM 99 (334)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCC
Confidence 47999999999999999999999999 568776664
No 71
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=21.49 E-value=67 Score=29.27 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=29.6
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 66 ~~~D~V~i~tp~~~H~~~~~~al~aG-k~Vl~EKPl 100 (364)
T 3e82_A 66 PDVDLVVIASPNATHAPLARLALNAG-KHVVVDKPF 100 (364)
T ss_dssp TTCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSCS
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEeCCC
Confidence 47999999999999999999999999 457775553
No 72
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=21.49 E-value=68 Score=28.67 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=30.4
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 71 ~~vD~V~I~tP~~~H~~~~~~al~aG-khVl~EKPl 105 (312)
T 3o9z_A 71 EGVDYLSIASPNHLHYPQIRMALRLG-ANALSEKPL 105 (312)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECSSS
T ss_pred CCCcEEEECCCchhhHHHHHHHHHCC-CeEEEECCC
Confidence 67999999999999999999999999 567776554
No 73
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=21.34 E-value=67 Score=28.81 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=30.6
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 72 ~~vD~V~I~tP~~~H~~~~~~al~aG-khVl~EKPl 106 (318)
T 3oa2_A 72 TALDYVSICSPNYLHYPHIAAGLRLG-CDVICEKPL 106 (318)
T ss_dssp TSCCEEEECSCGGGHHHHHHHHHHTT-CEEEECSSC
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHCC-CeEEEECCC
Confidence 57999999999999999999999999 567776664
No 74
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}
Probab=21.28 E-value=50 Score=30.50 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=24.3
Q ss_pred CCcEEEeccCCC-CCHhhHHHHHHcCCCcEEec
Q 022704 48 TPSISPGGTGVF-VDREGAGKHIQAGAKKVLIT 79 (293)
Q Consensus 48 ~~DivlestG~~-~s~~~a~~hl~aGakkVVIs 79 (293)
.+|+|++|||.. ...+++.+++++|. .||..
T Consensus 66 ~iDvVve~t~~~~~a~~~~~~AL~aGK-hVVta 97 (332)
T 2ejw_A 66 EADLVVEAMGGVEAPLRLVLPALEAGI-PLITA 97 (332)
T ss_dssp TCSEEEECCCCSHHHHHHHHHHHHTTC-CEEEC
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCC-eEEEC
Confidence 799999999987 35678888999996 35443
No 75
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=21.25 E-value=62 Score=28.65 Aligned_cols=35 Identities=23% Similarity=0.082 Sum_probs=28.6
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+.||......+.+..++++| |.|++..|.
T Consensus 68 ~~~D~V~i~tp~~~h~~~~~~al~~G-k~v~~eKP~ 102 (315)
T 3c1a_A 68 PEVEAVIIATPPATHAEITLAAIASG-KAVLVEKPL 102 (315)
T ss_dssp TTCCEEEEESCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEcCCC
Confidence 47999999999988889999999998 456665554
No 76
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Probab=20.77 E-value=1.1e+02 Score=28.00 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=24.2
Q ss_pred CCCcEEEeccCCCCC----HhhHHHHHHcCCCcEEec
Q 022704 47 ATPSISPGGTGVFVD----REGAGKHIQAGAKKVLIT 79 (293)
Q Consensus 47 ~~~DivlestG~~~s----~~~a~~hl~aGakkVVIs 79 (293)
..+|+|++||+.... .+.+..++++|. -|++
T Consensus 81 ~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGk--hVVt 115 (325)
T 3ing_A 81 EAADLLVDCTPASRDGVREYSLYRMAFESGM--NVVT 115 (325)
T ss_dssp SCCSEEEECCCCCSSSHHHHHHHHHHHHTTC--EEEE
T ss_pred CCCCEEEECCCCccccchHHHHHHHHHHCCC--eEEE
Confidence 468999999987643 478889999997 4454
No 77
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=20.61 E-value=72 Score=28.21 Aligned_cols=35 Identities=26% Similarity=0.142 Sum_probs=28.2
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
.++|+|+.||......+.+..++++|. .|++-.|.
T Consensus 61 ~~~D~V~i~tp~~~h~~~~~~al~~Gk-~v~~ekP~ 95 (332)
T 2glx_A 61 PDVDAVYVSTTNELHREQTLAAIRAGK-HVLCEKPL 95 (332)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSSS
T ss_pred CCCCEEEEeCChhHhHHHHHHHHHCCC-eEEEeCCC
Confidence 369999999999888899999999984 46665443
No 78
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=20.47 E-value=67 Score=29.21 Aligned_cols=35 Identities=23% Similarity=0.084 Sum_probs=30.0
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 64 ~~~D~V~i~tp~~~h~~~~~~al~aG-khVl~EKP~ 98 (359)
T 3e18_A 64 EKVDAVLIATPNDSHKELAISALEAG-KHVVCEKPV 98 (359)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEESSC
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHCC-CCEEeeCCC
Confidence 47999999999999999999999999 567776664
No 79
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=20.23 E-value=69 Score=28.84 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=29.7
Q ss_pred CCCcEEEeccCCCCCHhhHHHHHHcCCCcEEecCCC
Q 022704 47 ATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPG 82 (293)
Q Consensus 47 ~~~DivlestG~~~s~~~a~~hl~aGakkVVIs~ps 82 (293)
..+|+|+-||......+.+..++++| |.|++--|.
T Consensus 81 ~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~EKPl 115 (340)
T 1zh8_A 81 GLVDAVDLTLPVELNLPFIEKALRKG-VHVICEKPI 115 (340)
T ss_dssp SCCSEEEECCCGGGHHHHHHHHHHTT-CEEEEESSS
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHCC-CcEEEeCCC
Confidence 47999999999999999999999999 467776554
Done!