RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 022704
(293 letters)
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 487 bits (1257), Expect = e-176
Identities = 220/238 (92%), Positives = 229/238 (96%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TGVFVDR+GAGKH+QAGAKKVLITAPGKGDIPTYVVGVN + Y + IISNASCTTNCL
Sbjct: 99 TGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCL 158
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 175
APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAA LNIVPTSTGAAKAVA
Sbjct: 159 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVA 218
Query: 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD 235
LVLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD
Sbjct: 219 LVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD 278
Query: 236 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 293
EPLVS+DFRC+DVSST+DSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct: 279 EPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 336
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 479 bits (1235), Expect = e-172
Identities = 177/239 (74%), Positives = 196/239 (82%), Gaps = 2/239 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKP-DEPIISNASCTTN 113
TGVFV EGA KHIQAGAKKVLITAPGKG + TYV+GVN Y+ D +ISNASCTTN
Sbjct: 99 TGVFVTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTN 158
Query: 114 CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKA 173
CLAP KVL FGIIKGTMTTTHSYT DQR+LDASHRDLRRARAAA+NIVPT+TGAAKA
Sbjct: 159 CLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKA 218
Query: 174 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 233
VALV+P LKGKLNGIALRVPTPNVSVVDLVVQV K T E+VN ++++ +KGI+
Sbjct: 219 VALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKY 278
Query: 234 CDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 292
D PLVS DFR +D SS VDSSLTLVM D+VKVIAWYDNEWGYSQRVVDLA++ A W
Sbjct: 279 SDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKW 337
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 478 bits (1232), Expect = e-171
Identities = 175/239 (73%), Positives = 194/239 (81%), Gaps = 2/239 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKP-DEPIISNASCTTN 113
TGVFV EGA KHIQAGAKKVLITAPGK + TYV+GVN Y+ D +ISNASCTTN
Sbjct: 99 TGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTN 158
Query: 114 CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKA 173
CLAP KVL FGIIKGTMTTTHSYT DQR+LDASHRDLRRARAAA+NIVPT+TGAAKA
Sbjct: 159 CLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKA 218
Query: 174 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 233
VALV+P LKGKLNGIALRVPTPNVSVVDLVVQV K T E+VN ++++ +KGI+
Sbjct: 219 VALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKY 278
Query: 234 CDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 292
D PLVS DFR +D SS VDSSLTLVM D+VKVIAWYDNEWGYSQRVVDLA++ A
Sbjct: 279 SDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKS 337
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 474 bits (1223), Expect = e-170
Identities = 134/234 (57%), Positives = 164/234 (70%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TG+F R+ A H++AGAK+V+++AP G T V GVN D D +ISNASCTTNCL
Sbjct: 99 TGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCL 158
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 175
AP +VL+ GI KG MTT HSYTGDQ LD H+DL RARAAAL+++PTSTGAAKAV
Sbjct: 159 APVAQVLNDTIGIEKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVG 218
Query: 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD 235
LVLP LKGKL+G+A+RVPTPNVSVVDL ++T EEVN A RE+A+ LKGIL D
Sbjct: 219 LVLPELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTD 278
Query: 236 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 289
E LVS DF SS + T VM MV++++WYDNEWG+S R+ D A +
Sbjct: 279 EKLVSHDFNHDSHSSVFHTDQTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALG 332
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 473 bits (1221), Expect = e-170
Identities = 138/234 (58%), Positives = 177/234 (75%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TGVF +RE A H+QAGAKKV+ITAP KG+ T V+G N D KP+ IIS ASCTTN +
Sbjct: 97 TGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSI 156
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 175
AP VKVL +KFGI+ G +TT HSYT DQR+LD H+DLRRARAAA+NI+PT+TGAAKAVA
Sbjct: 157 APIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVA 216
Query: 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCD 235
LV+P +KGKL+G+A+RVPTP+ S+ DL V V K+T EEVNA +E+ + LKGI+ D
Sbjct: 217 LVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYND 276
Query: 236 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 289
EP+VS D + S D+++T V+G +VKV +WYDNE+GYS RVVD +++
Sbjct: 277 EPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLL 330
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 473 bits (1221), Expect = e-170
Identities = 139/239 (58%), Positives = 175/239 (73%), Gaps = 1/239 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNC 114
TG F +E A H++AGAKKV++TAPGK + T VVGVN D + +ISNASCTTNC
Sbjct: 99 TGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNC 158
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 174
LAP VKVLD++FGI G MTT H+YT DQ+ +D H+DLRRARA +I+PT+TGAAKA+
Sbjct: 159 LAPVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKAL 218
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 234
A VLP L GKL+G+ALRVPTPNVS+VDLVV V + E +N AF+ A+ LKGI+
Sbjct: 219 AKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFS 278
Query: 235 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 293
+EPLVS+DF + S+ +D T+VMGD VKV+AWYDNEWGYS+RVVDL +V +
Sbjct: 279 EEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVDELA 337
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 466 bits (1201), Expect = e-167
Identities = 105/236 (44%), Positives = 142/236 (60%), Gaps = 1/236 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNC 114
TGV+ RE HI AGAKKVL + PG D+ T V GVN D + + I+SNASCTTNC
Sbjct: 100 TGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNC 159
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 174
+ P +K+LD +GI GT+TT HS DQ+++DA H DLRR RAA+ +I+P T A +
Sbjct: 160 IIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGI 219
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 234
P + IA+RVPT NV+ +DL V V K A EVN +++A GI+
Sbjct: 220 TRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYT 279
Query: 235 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290
+ PLVSVDF S+ VD + T V G ++K + W DNEWG++ R++D +A
Sbjct: 280 ELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 465 bits (1200), Expect = e-167
Identities = 135/238 (56%), Positives = 172/238 (72%), Gaps = 2/238 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNC 114
TGVF D + A H++ GAKKV+ITAP KG+ T V+GVN +AY P IISNASCTTN
Sbjct: 94 TGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNS 153
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 174
LAP +KVL++ FG+ K MTT HSYT DQRLLD H+DLRRARAAA+NI+PT+TGAAKA
Sbjct: 154 LAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKAT 213
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 234
ALVLP+LKG+ +G+ALRVPT S+ D+ + ++ AEEVNAA + +A+ LKGIL+
Sbjct: 214 ALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYT 273
Query: 235 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 292
++ +V D SS VD+ LT +G +MVKV AWYDNEWGY+ RV DL ++V
Sbjct: 274 EDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELVLRKG 330
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 465 bits (1200), Expect = e-167
Identities = 152/236 (64%), Positives = 187/236 (79%), Gaps = 1/236 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNC 114
TG F RE A KH++AGAKKV+I+AP K + T V+GVN D Y P +ISNASCTTNC
Sbjct: 96 TGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNC 155
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 174
LAPF KVL ++FGI++G MTT HSYT DQR+LD H+DLRRARAAA +I+PT+TGAAKAV
Sbjct: 156 LAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAV 215
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 234
ALVLP LKGKLNG+A+RVPTPNVSVVDLV ++ K+ EEVNAA + +A+ ELKGIL+
Sbjct: 216 ALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYS 275
Query: 235 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290
+EPLVS D+ S VSST+D+ T+V+ MVKV++WYDNE GYS RVVDLA +A+
Sbjct: 276 EEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 462 bits (1191), Expect = e-166
Identities = 129/236 (54%), Positives = 161/236 (68%), Gaps = 2/236 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNC 114
TG F +E AG HI+ GAKKV+I+APG D+ T V GVN K + +ISNASCTTNC
Sbjct: 99 TGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNC 158
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 174
LAP VK L+ K G+ G MTT H+YT +Q L D H DLRRAR+A ++++PT TGAA AV
Sbjct: 159 LAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAV 218
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 234
VLP L GKLNG A+RVPT NVS+VDL + T EEVN + +++ ELKGIL
Sbjct: 219 GDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYN 278
Query: 235 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290
EPLVSVD+ SSTVD+SLT V G +VKV +WYDNEWG+S R++D + +
Sbjct: 279 TEPLVSVDYNHDPASSTVDASLTKVSG-RLVKVSSWYDNEWGFSNRMLDTTVALMS 333
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 450 bits (1159), Expect = e-161
Identities = 138/244 (56%), Positives = 170/244 (69%), Gaps = 10/244 (4%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNC 114
TGVF DRE A KH+Q GAKKV+ITAP K T V+GVN + Y P E IISNASCTTNC
Sbjct: 97 TGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNC 156
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 174
LAP VKVL++ FG+ KG M T H+YT DQRLLD H+D RRARAAA+NIVPT+TGAAKA+
Sbjct: 157 LAPCVKVLNEAFGVEKGYMVTVHAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAI 216
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKK-TFAEEVNAAFRESADN-------E 226
V+P LKGKL+G A RVP P+ S++DL V V+K + EEVN FRE+A
Sbjct: 217 GEVIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVY 276
Query: 227 LKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLAD 286
LK IL C++P+VS D + S+ D+ LT V+ ++V + AWYDNEWGYS R+ DL
Sbjct: 277 LKEILQYCEDPIVSTDIVGNPHSAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVI 335
Query: 287 IVAN 290
+A
Sbjct: 336 YLAE 339
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 446 bits (1150), Expect = e-159
Identities = 133/241 (55%), Positives = 169/241 (70%), Gaps = 7/241 (2%)
Query: 56 TGVFV----DREGAGKHI-QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASC 110
TGVF D+ G H+ AGAKKV++T P K +I T V+GVN D +SNASC
Sbjct: 115 TGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASC 174
Query: 111 TTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA 170
TTNCLAP KVL + FGI +G MTT H+YT DQR+LD H DLRRARAAAL+I+PTSTGA
Sbjct: 175 TTNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGA 234
Query: 171 AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKK-TFAEEVNAAFRESADN-ELK 228
AKAV LVLP LKGKLNG ++RVP P S+VDL VQ+ KK EE+N+ R++++ ELK
Sbjct: 235 AKAVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELK 294
Query: 229 GILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 288
GIL ++P+VS D + + SS VD T+V+ + K+++WYDNE+GYS RVVDLA +
Sbjct: 295 GILGYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKL 354
Query: 289 A 289
Sbjct: 355 V 355
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 398 bits (1025), Expect = e-140
Identities = 107/241 (44%), Positives = 144/241 (59%), Gaps = 10/241 (4%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TG + D++ A HI+AGAKKVLI+AP GD+ T V N E ++S ASCTTN L
Sbjct: 99 TGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSL 158
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR--DLRRARAAALNIVPTSTGAAKA 173
AP KVL+ FG+++G MTT H+YTGDQ DA HR D RRARAAA NI+P STGAAKA
Sbjct: 159 APVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKA 218
Query: 174 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKK-TFAEEVNAAFRESADNELKGILS 232
+ V+P + GKL+G A RVP S+ +L V + K+ E+VN A + +++
Sbjct: 219 IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASN----ESFG 274
Query: 233 VCDEPLVSVDFRCSDVSSTVDSSLTLVMG---DDMVKVIAWYDNEWGYSQRVVDLADIVA 289
++ +VS D S D++ T VM +VKV AWYDNE Y+ ++V +A
Sbjct: 275 YTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLA 334
Query: 290 N 290
Sbjct: 335 E 335
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 387 bits (996), Expect = e-136
Identities = 118/235 (50%), Positives = 161/235 (68%), Gaps = 2/235 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TG+F+ E A KHI AGAKKV++T P K + P +V G N D Y + I+SNASCTTNCL
Sbjct: 96 TGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQD-IVSNASCTTNCL 154
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAV 174
AP KV++ FGII+G MTT H+ T Q+ +D SH+D R R A+ NI+P+STGAAKAV
Sbjct: 155 APLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAV 214
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 234
VLP L GKL G+A RVPTPNVSVVDL V++ K E++ AA + +A+ E+KG+L
Sbjct: 215 GKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYT 274
Query: 235 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 289
++ +VS DF +S D+ + + D+ VK+++WYDNE GYS +V+DL ++
Sbjct: 275 EDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 329
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 384 bits (990), Expect = e-135
Identities = 120/238 (50%), Positives = 160/238 (67%), Gaps = 4/238 (1%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNC 114
TGVF E A H++ GAKKV+I+AP K ++P YV+GVN Y P + +ISNASCTTNC
Sbjct: 113 TGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNC 172
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAA 171
LAP K+++ KFGI++G MTT HS T +Q +D + D R R A NI+P STGAA
Sbjct: 173 LAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAA 232
Query: 172 KAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGIL 231
KAV V+PAL GKL G+A+RVPTP+VSVVDL +++K EE+ A +E+++ +KGI+
Sbjct: 233 KAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIM 292
Query: 232 SVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 289
+ +VS DF SS D + + + D VK+I+WYDNE GYS R+VDLA VA
Sbjct: 293 GYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 350
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 383 bits (985), Expect = e-134
Identities = 118/241 (48%), Positives = 159/241 (65%), Gaps = 7/241 (2%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNC 114
TG+F + A H++ GA+KV+I+AP G T V+GVN Y P + ++SNASCTTNC
Sbjct: 111 TGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNC 170
Query: 115 LAPFVKVL-DQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAK 172
LAP V VL + FG+ G MTT HSYT Q+ +D S +D R RAAA+NI+P++TGAAK
Sbjct: 171 LAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK 230
Query: 173 AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS 232
AV +V+P+ +GKL G++ RVPTP+VSVVDL ++ T +E++AA + ++ +KGIL
Sbjct: 231 AVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILG 290
Query: 233 VCDEPLVSVDFRCSDVSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIV 288
DE LVS DF + SS DS TL K+++WYDNEWGYS RVVDL +
Sbjct: 291 YTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHM 350
Query: 289 A 289
A
Sbjct: 351 A 351
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 381 bits (981), Expect = e-134
Identities = 122/235 (51%), Positives = 163/235 (69%), Gaps = 2/235 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TGVF + + A KHI AGAKKV+ITAP P +V+GVN + Y D I+SNASCTTNCL
Sbjct: 97 TGVFKELDTAQKHIDAGAKKVVITAPSS-TAPMFVMGVNEEKYTSDLKIVSNASCTTNCL 155
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAV 174
AP KV++ FGI +G MTT HS T Q+ +D SH+D R R A+ NI+P+STGAAKAV
Sbjct: 156 APLAKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAV 215
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 234
VLP L+GKL G+A RVPT +VSVVDL V+++K+T +E+ + +A+ +LKG+L
Sbjct: 216 GKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYT 275
Query: 235 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 289
++ +VS DF SS D+S + + VK+++WYDNE+GYS RVVDL + VA
Sbjct: 276 EDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 381 bits (982), Expect = e-134
Identities = 116/239 (48%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TGVF+ +E A H++ GAKKV+++AP K D P YV+G+N Y + I+SNASCTTNCL
Sbjct: 107 TGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCL 166
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAK 172
AP KV++ +FGI++G MTT H+ T +Q ++D + D R R A NI+P STGAAK
Sbjct: 167 APLAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAK 226
Query: 173 AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS 232
AV VLP L GKL G+A RVP VSVVDLV ++ K EEV +++A+ LKGIL
Sbjct: 227 AVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILG 286
Query: 233 VCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291
++ +VS DF + SS D L + D+ K+++WYDNEWGYS RV+DLA + +
Sbjct: 287 YTEDEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITTS 345
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 378 bits (973), Expect = e-132
Identities = 113/236 (47%), Positives = 156/236 (66%), Gaps = 3/236 (1%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNC 114
TGV++ + A HI AGA++V+I+AP D P +V+GVN + Y P I+SNASCTTNC
Sbjct: 102 TGVYLSIQAASDHISAGAQRVVISAPSP-DAPMFVMGVNENDYNPGSMNIVSNASCTTNC 160
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKA 173
LAP KV+ ++FGI++G MTT HSYT Q+ +D S + R R A NI+P STGAAKA
Sbjct: 161 LAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKA 220
Query: 174 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 233
V V+P LKGKL G+A RVPTP+VSVVDL ++++ + A + +A + GIL+
Sbjct: 221 VTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAY 280
Query: 234 CDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 289
++ +VS DF SS D+ + + D+ VK+I+WYDNE+GYS RVVDL +
Sbjct: 281 TEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMF 336
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 376 bits (968), Expect = e-132
Identities = 122/235 (51%), Positives = 161/235 (68%), Gaps = 2/235 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TGVF D+E A H++ GAKKV+I+AP K D P +V GVN D Y D I+SNASCTTNCL
Sbjct: 101 TGVFTDKEKAAAHLKGGAKKVVISAPSK-DAPMFVCGVNEDKYTSDIDIVSNASCTTNCL 159
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAV 174
AP KV+ FGII+G MTT H+ T Q+ +D S +D R RAA+ NI+P+STGAAKAV
Sbjct: 160 APLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAV 219
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 234
VLP L GKL G++ RVPT +VSVVDL V++ K + + +A + +++ +LKGI+
Sbjct: 220 GKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYV 279
Query: 235 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 289
+E LVS DF SS D+ + + D+ VK++AWYDNEWGYS RV+DL +A
Sbjct: 280 EEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 367 bits (945), Expect = e-128
Identities = 116/235 (49%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TGVF E AG H+Q GAK+V+I+AP D P +V+GVN + Y IISNASCTTNCL
Sbjct: 99 TGVFTTMEKAGAHLQGGAKRVIISAPSA-DAPMFVMGVNHEKYDNSLKIISNASCTTNCL 157
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAV 174
AP KV+ FGI++G MTT H+ T Q+ +D S + R R A NI+P STGAAKAV
Sbjct: 158 APLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAV 217
Query: 175 ALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVC 234
V+P L GKL G+A RVPT NVSVVDL ++ K +++ +++++ LKGIL
Sbjct: 218 GKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYT 277
Query: 235 DEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 289
+ +VS DF SST D+ + + D VK+I+WYDNE+GYS RVVDL +A
Sbjct: 278 EHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 332
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 226 bits (578), Expect = 7e-73
Identities = 44/238 (18%), Positives = 78/238 (32%), Gaps = 17/238 (7%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNC 114
T + + + + G K + DI ++ N + + SC T
Sbjct: 86 TPEGIGAKNLKMYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEESY-GKDYTRVVSCNTTG 144
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV 174
L +K L FGI K ++ ++ I+P
Sbjct: 145 LCRTLKPLHDSFGIKKVRAVIVRRGADPAQV----------SKGPINAIIPNPPKLPSHH 194
Query: 175 AL-VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSV 233
V L ++ +A+ VPT + +++V+V + +++ F + + IL
Sbjct: 195 GPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFE----DTPRVILIS 250
Query: 234 CDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 291
++ L S S L + I DNE Y Q V +DIV N
Sbjct: 251 AEDGLTSTAEIMEYAKELGRSRNDLFEIPVWRESITVVDNEIYYMQAVHQESDIVPEN 308
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 197 bits (503), Expect = 1e-61
Identities = 35/242 (14%), Positives = 75/242 (30%), Gaps = 21/242 (8%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAP--GKGDIPTYVVGVNADAYKPDEPIISNASCTTN 113
+ ++ + K ++ K + + + + + SC T
Sbjct: 89 APKKIGKQNLENIYKPHKVKAILQGGEKAKDVEDNFNALWSYNRCYGKD-YVRVVSCNTT 147
Query: 114 CLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKA 173
L + ++ I K + A N V +
Sbjct: 148 GLCRILYAINSIADIKKARIVLVRRAADPNDDKT------GPVNAITPNPVTVPSHHGPD 201
Query: 174 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD----NELKG 229
V V+P +GK+ A+ VPT + + L+V+V +++ A +++ G
Sbjct: 202 VVSVVPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDG 261
Query: 230 ILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 289
S D D + +V ++ + V+ +NE Q V + ++
Sbjct: 262 FSSTAKIIEYGRDLG----RLRYDINELVVW-EESINVL---ENEIFLMQAVHQESIVIP 313
Query: 290 NN 291
N
Sbjct: 314 EN 315
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 169 bits (429), Expect = 1e-50
Identities = 32/225 (14%), Positives = 67/225 (29%), Gaps = 18/225 (8%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
T + + + +AG K + V + + SC T L
Sbjct: 87 TPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGL 146
Query: 116 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVA 175
+ + + + M + D + R A V + V
Sbjct: 147 VRTLSAIREYADYVYAVMIRRAADPNDTK---------RGPINAIKPTVEVPSHHGPDVQ 197
Query: 176 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD----NELKGIL 231
V+P + +A VPT + V ++V++ K ++V F + + KG
Sbjct: 198 TVIP---INIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFD 254
Query: 232 SVCDEPLVSVD--FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 274
S + D +++ ++ + + + I E
Sbjct: 255 STAQIIEFARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQE 299
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 156 bits (396), Expect = 7e-46
Identities = 29/228 (12%), Positives = 73/228 (32%), Gaps = 18/228 (7%)
Query: 55 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNC 114
T V + ++Q + + + I SC T
Sbjct: 84 TTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTA 143
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA--AK 172
L + +++ + K T + ++++ +L P + + AK
Sbjct: 144 LLRTICTVNKVSKVEKVRATIVRRAADQK--------EVKKGPINSLVPDPATVPSHHAK 195
Query: 173 AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAF----RESADNELK 228
V V+ + +A+ PT + + + + + K +++ + R +
Sbjct: 196 DVNSVIR--NLDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSKY 253
Query: 229 GILSVCDEPLVSVDFRCS--DVSSTVDSSLTLVMGDDMVKVIAWYDNE 274
+ + V+ D + D+ + S ++ + DD V ++ E
Sbjct: 254 DAEATAELVEVARDLKRDRNDIPEVMIFSDSIYVKDDEVMLMYAVHQE 301
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 2e-06
Identities = 36/296 (12%), Positives = 80/296 (27%), Gaps = 102/296 (34%)
Query: 90 VVGVNADAYKPD----------EPIISNASC-----------------------TTNCLA 116
++ V DA+ + + I+S +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 117 PFVK-VLDQKFGII--------KGTMTTTHSYTGDQRLLDASHRD--------------L 153
FV+ VL + + + T Y +QR D + D
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQR--DRLYNDNQVFAKYNVSRLQPY 137
Query: 154 RRARAAALNIVPTS-------TGAAKAVALVLPAL-----KGKLNG----IAL-RVPTPN 196
+ R A L + P G+ K + L + K++ + L +P
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 197 VSV---VDLVVQVSKKTFAEEVNAAFR-----ESADNELKGILS-------------VCD 235
+ L+ Q+ + + + S EL+ +L V +
Sbjct: 197 TVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 236 EPLV-SVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 290
+ + C + +T +T + I+ + + ++ ++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLK 309
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 7e-05
Identities = 59/356 (16%), Positives = 117/356 (32%), Gaps = 115/356 (32%)
Query: 10 LTSSSTTPP-----SA--SLKPMLNQLVLMAS-LLMARSSRLFLTATP----SISPGGTG 57
L + S TP S S P L ++ +A ++ A+ TP S G TG
Sbjct: 219 LENPSNTPDKDYLLSIPISC-P-LIGVIQLAHYVVTAKLLGF----TPGELRSYLKGATG 272
Query: 58 --------VFVDREGAGKHIQAGAKKVL-----I------TAP---------------GK 83
V + + + +K + I P +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 84 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVL-------DQKFGIIKGTMTTT 136
G +P+ ++ ++ + + ++ TN P K + + ++
Sbjct: 333 G-VPSPMLSISNLTQEQVQDYVN----KTNSHLPAGKQVEISLVNGAKNL-VV------- 379
Query: 137 HSYTGDQRLLDASHRDLRRARAAA-LNI--VPTSTGAAKAVALVLPA--------LKGKL 185
+G + L + LR+A+A + L+ +P S K LP L
Sbjct: 380 ---SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 186 NGIALRVPTPNVS--VVDLVVQVSKKTFAEEVNAAFRESADNELKGIL-SVCDEPLVSVD 242
+ I + NVS D+ + V + + R + + + I+ + P V
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPV----YDTFDGSDLRVLSGSISERIVDCIIRLP---VK 489
Query: 243 F-RCSDVSST--VD------SSLTLVMGDDM----VKVI------AWYDNEWGYSQ 279
+ + +T +D S L ++ + V+VI D+++G+ Q
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 35.0 bits (80), Expect = 0.029
Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 44/137 (32%)
Query: 134 TTTHSYTGDQRLLD--------------ASHRDLRRARAAALNIVPT-------STG--- 169
+T++++ ++ LL A+ DL+ ++P S G
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK-----GLIPADATFAGHSLGEYA 1768
Query: 170 AAKAVALVLP---ALK-----GKLNGIALRVP-----TPNVSVVDLVVQVSKKTFAEEVN 216
A ++A V+ ++ G +A VP N ++ + +F++E
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVA--VPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 217 AAFRESADNELKGILSV 233
E ++ +
Sbjct: 1827 QYVVERVGKRTGWLVEI 1843
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.1 bits (78), Expect = 0.059
Identities = 25/193 (12%), Positives = 49/193 (25%), Gaps = 46/193 (23%)
Query: 46 TATPSISPGGT----GVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA-YKP 100
PS + E A ++A ++ + + G A
Sbjct: 1276 EEIPSEDQNEFLLERTREIHNE-AESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTI 1334
Query: 101 DEPIISNASCTT---NCLAPFVKVLDQKFGIIKGT------MTTTHSYTGDQRLLDASHR 151
D+ +++ T+ N +++ + + TG H
Sbjct: 1335 DDLGVASFHGTSTKANDKNE-SATINEMMKHLGRSEGNPVIGVFQKFLTG--------H- 1384
Query: 152 DLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIA-----LRVPTPNVSVVDLVVQV 206
+ AA GA + L +GI + + V+
Sbjct: 1385 ----PKGAA--------GAWMMNGALQ-ILN---SGIIPGNRNADNVDKILEQFEYVLYP 1428
Query: 207 SKKTFAEEVNAAF 219
SK + V A
Sbjct: 1429 SKTLKTDGVRAVS 1441
Score = 30.6 bits (69), Expect = 0.71
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 59 FVDREGAGKHI---QAGAKKVLITAPGKGDIPTYVVGVNADAYK-----PDEPIISNASC 110
F++ +GAG I A K + P G + D P + I++ A
Sbjct: 1177 FMEAQGAGIQIIMQADLALK--MGVPIYGIVAMA--ATATDKIGRSVPAPGKGILTTARE 1232
Query: 111 TTNCLAPFVKVLDQKF 126
+ + L+ K+
Sbjct: 1233 HHSSVKYASPNLNMKY 1248
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 32.9 bits (76), Expect = 0.095
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 85 DIPTYVVGVNADAYK--PDEPIISNASCTTNCLAPFVKVLDQKFGI 128
P +V VNA+ ++S+ L + L
Sbjct: 106 VAPPVMVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATLDC 151
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 33.1 bits (75), Expect = 0.11
Identities = 32/144 (22%), Positives = 46/144 (31%), Gaps = 18/144 (12%)
Query: 7 SRPLTSSSTTPPSASLKPMLNQLVLMASLLMARSSRLFLTATPSISPGGTGVFVDREGAG 66
S + T A+ P Q L+ L+ +TA G G AG
Sbjct: 159 SLAHFTPRTDWYPATGAPQPEQQQLLKQLMTMPPGVAAVTAAR-----GRG---KSALAG 210
Query: 67 KHIQAGAKKVLITAPGKGDIPTYV--VGVNADAYKPDEPIISNASCTTNCL-------AP 117
+ I A + ++TAP K G PD + S+ + AP
Sbjct: 211 QLISRIAGRAIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAP 270
Query: 118 FVKVLDQKFGIIKGTMTTTHSYTG 141
+ L +F T TT Y G
Sbjct: 271 LLHQLVSRFPRTLLT-TTVQGYEG 293
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 32.1 bits (74), Expect = 0.18
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 85 DIPTYVVGVNADAYKPDEP--IISNASCTTNCLAPFVKVLDQKFGI 128
D+P V VN + P II+N +CTT P +KVL + +
Sbjct: 102 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARL 147
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 32.1 bits (74), Expect = 0.19
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 85 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGI 128
D+P V VNA A II+ +C+T + ++ + QK+G+
Sbjct: 103 DVPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKWGL 146
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 31.7 bits (73), Expect = 0.27
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 85 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGI 128
+P V VN + II+N +CTT LA + L + F
Sbjct: 100 WVPLVVPEVNREKIFQHRGIIANPNCTTAILAMALWPLHRAFQA 143
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 30.6 bits (70), Expect = 0.53
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 85 DIPTYVVGVNADAYKPDEP----------IISNASCTTNCLAPFVKVLDQKFGIIKGTMT 134
D+P +N + + + ++ N +CT ++ +K L + K +T
Sbjct: 116 DVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIATKSKIIIT 175
Query: 135 T 135
T
Sbjct: 176 T 176
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 30.7 bits (70), Expect = 0.54
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 15/67 (22%)
Query: 85 DIPTYVVGVNADAYKPDEP---------------IISNASCTTNCLAPFVKVLDQKFGII 129
D+P V VN + E II ++C+T L +K L +KFG I
Sbjct: 132 DVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAGLVAPLKPLVEKFGPI 191
Query: 130 KGTMTTT 136
TTT
Sbjct: 192 DALTTTT 198
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine
deaminase, ferredoxin-like domain; 2.40A {Methanopyrus
kandleri}
Length = 278
Score = 30.5 bits (68), Expect = 0.60
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 41 SRLFLTATPSISPGGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYV--VGVNADAY 98
+F+TA P + A + +AG V+ G+G P Y+ GV
Sbjct: 58 KVVFVTARPCL-----------YCARELAEAGVAGVVYLGRGRGLGPYYLARSGVEVVEV 106
Query: 99 KPDEPI 104
PDEP+
Sbjct: 107 HPDEPL 112
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 30.5 bits (70), Expect = 0.67
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 85 DIPTYVVGVNADAYKPDEP--IISNASCTTNCLAPFVKVLDQKFGI 128
DIP V VN +A II+N +C+T + +K + GI
Sbjct: 104 DIPLVVPEVNPEAIAEFRNRNIIANPNCSTIQMLVALKPIYDAVGI 149
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat,
nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB:
2h2a_A*
Length = 189
Score = 29.0 bits (66), Expect = 1.4
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 20/74 (27%)
Query: 231 LSVCDEPLVSVD---FRCSDVSSTVD-----------SSLTLVMGDDMVKVIA-WYDNEW 275
+ + + + + S T D S L V+G D + WY
Sbjct: 62 MIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQ--- 118
Query: 276 GYSQRVVDLADIVA 289
+ + ++ V
Sbjct: 119 --IEYLKEMVTFVV 130
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 29.1 bits (66), Expect = 1.5
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 85 DIPTYVVGVNADAYKPDEP----------IISNASCTTNCLAPFVKVLDQKFGIIKGTMT 134
D+P + VNAD + E II+N +C+T C +K + KFG+ +
Sbjct: 122 DVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIA 181
Query: 135 T 135
T
Sbjct: 182 T 182
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman
fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB:
1kaq_A*
Length = 194
Score = 28.3 bits (64), Expect = 2.3
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 231 LSVCDEPLVSVD---FRCSDVSSTVD-----------SSLTLVMGDDMVKVIA-WYDNEW 275
L++ P ++ S T D L ++G DM++ + WY
Sbjct: 67 LAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYK--- 123
Query: 276 GYSQRVVDLADIVA 289
+++L +
Sbjct: 124 --LDELLNLIQFIG 135
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta
domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa}
PDB: 1yul_A* 1yun_A*
Length = 242
Score = 28.5 bits (64), Expect = 2.4
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 21/75 (28%)
Query: 231 LSVCDEPLVSVD---FRCSDVSSTVD------------SSLTLVMGDDMVKVIA-WYDNE 274
+V ++VD + S T+D L +++G D + W+
Sbjct: 82 RAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHR-- 139
Query: 275 WGYSQRVVDLADIVA 289
+ ++D IV
Sbjct: 140 ---WEALLDHCHIVV 151
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD,
nucleotidyltransferase, pyridine nucleotide biosynthesi
transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB:
3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A*
2qtm_A*
Length = 189
Score = 27.9 bits (63), Expect = 2.6
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 231 LSVCDEPLVSVD---FRCSDVSSTVD-----------SSLTLVMGDDMVKVIA-WYDNEW 275
L+ E S+ S T D ++G DMV+ + WY+
Sbjct: 62 LATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYN--- 118
Query: 276 GYSQRVVDLADIVA 289
+ ++DL V
Sbjct: 119 --IEALLDLVTFVG 130
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG,
midwest center for structu genomics, PSI; 1.65A {Vibrio
parahaemolyticus}
Length = 177
Score = 27.9 bits (63), Expect = 2.7
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 26/82 (31%)
Query: 223 ADNELKGILSVCDEPLVSVDFRCSDVSSTVD--------------SSLTLVMGDDMVKVI 268
D L + D ++ +V + +T V+G D
Sbjct: 60 KDMGLSNV-QRSD-----LEQALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKF 113
Query: 269 A-WYDNEWGYSQRVVDLADIVA 289
A +Y ++ + + ++A
Sbjct: 114 AKFYK-----AEEITERWTVMA 130
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 4.2
Identities = 4/14 (28%), Positives = 7/14 (50%), Gaps = 2/14 (14%)
Query: 98 YKPDE-PIIS-NAS 109
Y D P ++ A+
Sbjct: 32 YADDSAPALAIKAT 45
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI,
MCSG, protein structure initiative; HET: AMP; 1.99A
{Thermoplasma volcanium GSS1}
Length = 143
Score = 26.8 bits (60), Expect = 6.0
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 5/26 (19%)
Query: 84 GDIPTYVVGVNADAY---KPDEPIIS 106
GD VV V D+ PI
Sbjct: 29 GDE--LVVVVARDSTARNNGKIPIFD 52
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 26.9 bits (59), Expect = 9.3
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 195 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDS 254
PN+ + + V AAF+ + G + E + SV DV+ D+
Sbjct: 643 PNLVIDQTKAVQYLHEIKDSVVAAFQWATKE---GPI--FGEEMRSVRVNILDVTLHADA 697
Query: 255 S 255
Sbjct: 698 I 698
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.373
Gapped
Lambda K H
0.267 0.0830 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,396,566
Number of extensions: 267314
Number of successful extensions: 648
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 54
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)