RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022704
(293 letters)
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 234 bits (599), Expect = 5e-79
Identities = 157/163 (96%), Positives = 161/163 (98%)
Query: 110 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTG 169
CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAA LNIVPTSTG
Sbjct: 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTG 60
Query: 170 AAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKG 229
AAKAVALVLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKG
Sbjct: 61 AAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKG 120
Query: 230 ILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 272
ILSVCDEPLVS+DFRC+DVSST+DSSLT+VMGDDMVKVIAWYD
Sbjct: 121 ILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 230 bits (589), Expect = 2e-77
Identities = 109/163 (66%), Positives = 135/163 (82%)
Query: 110 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTG 169
CTTNCLAPF KVL ++FGI++G MTT HSYT DQR+LD H+DLRRARAAA +I+PT+TG
Sbjct: 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTG 60
Query: 170 AAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKG 229
AAKAVALVLP LKGKLNG+A+RVPTPNVSVVDLV ++ K+ EEVNAA + +A+ ELKG
Sbjct: 61 AAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKG 120
Query: 230 ILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 272
IL+ +EPLVS D+ S VSST+D+ T+V+ MVKV++WYD
Sbjct: 121 ILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 163
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 220 bits (561), Expect = 3e-73
Identities = 76/164 (46%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 110 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDL-RRARAAALNIVPTST 168
CTTNCLAP KV+ FGI++G MTT H+ T Q+ +D L R R A NI+P ST
Sbjct: 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60
Query: 169 GAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELK 228
GAAKAV V+P L GKL G+A RVPT NVSVVDL ++ K +++ +++++ LK
Sbjct: 61 GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK 120
Query: 229 GILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 272
GIL + +VS DF SST D+ + + D VK+I+WYD
Sbjct: 121 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 209 bits (533), Expect = 6e-69
Identities = 93/163 (57%), Positives = 113/163 (69%), Gaps = 1/163 (0%)
Query: 109 SCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTST 168
SCTTNCLAP VK L+ K G+ G MTT H+YT +Q L D H DLRRAR+A ++++PT T
Sbjct: 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYHEDLRRARSATMSMIPTKT 60
Query: 169 GAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELK 228
GAA AV VLP L GKLNG A+RVPT NVS+VDL + T EEVN + +++ ELK
Sbjct: 61 GAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELK 120
Query: 229 GILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWY 271
GIL EPLVSVD+ SSTVD+SLT V G +VKV +WY
Sbjct: 121 GILDYNTEPLVSVDYNHDPASSTVDASLTKVSG-RLVKVSSWY 162
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 199 bits (508), Expect = 3e-65
Identities = 93/163 (57%), Positives = 120/163 (73%), Gaps = 1/163 (0%)
Query: 110 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTG 169
CTTN LAP +KVL++ FG+ K MTT HSYT DQRLLD H+DLRRARAAA+NI+PT+TG
Sbjct: 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTG 60
Query: 170 AAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKG 229
AAKA ALVLP+LKG+ +G+ALRVPT S+ D+ + ++ AEEVNAA + +A+ LKG
Sbjct: 61 AAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKG 120
Query: 230 ILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 272
IL+ ++ +V D SS VD+ LT +G +MVKV AWYD
Sbjct: 121 ILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYD 162
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 185 bits (470), Expect = 2e-59
Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 6/169 (3%)
Query: 109 SCTTNCLAPFVKVL-DQKFGIIKGTMTTTHSYTGDQRLL-DASHRDLRRARAAALNIVPT 166
SCTTNCLAP V VL + FG+ G MTT HSYT Q+ + S +D R RAAA+NI+P+
Sbjct: 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60
Query: 167 STGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNE 226
+TGAAKAV +V+P+ +GKL G++ RVPTP+VSVVDL ++ T +E++AA + ++
Sbjct: 61 TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTY 120
Query: 227 LKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG----DDMVKVIAWY 271
+KGIL DE LVS DF + SS DS TL K+++WY
Sbjct: 121 MKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWY 169
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 127 bits (321), Expect = 4e-37
Identities = 23/174 (13%), Positives = 56/174 (32%), Gaps = 16/174 (9%)
Query: 110 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTG 169
C T L + +++ + K T + ++++ +L P +
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQK--------EVKKGPINSLVPDPATVP 52
Query: 170 AA--KAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNEL 227
+ K V V+ L + +A+ PT + + + + + K +++ + + L
Sbjct: 53 SHHAKDVNSVIRNLD--IATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVL 110
Query: 228 KGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRV 281
+ V+ D ++ D + V D+E V
Sbjct: 111 ISSKYDAEATAELVEVARDLKRDRNDIPEVMIFS-DSIYVK---DDEVMLMYAV 160
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 123 bits (311), Expect = 1e-35
Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 21/168 (12%)
Query: 109 SCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTST 168
SC T L +K L FGI K + ++ I+P
Sbjct: 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPA----------QVSKGPINAIIPNPP 50
Query: 169 GAAKAVA-LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNEL 227
V L ++ +A+ VPT + +++V+V + +++ F ++ L
Sbjct: 51 KLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVIL 110
Query: 228 KGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEW 275
++ L S + + +D+ ++ W ++
Sbjct: 111 IS----AEDGLTST---AEIMEYAKELG---RSRNDLFEIPVWRESIT 148
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 99.7 bits (248), Expect = 3e-26
Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAY-KPDEPIISNASCTTN 113
T + + + + G K + DI ++ N + D + +
Sbjct: 86 TPEGIGAKNLKMYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVD 145
Query: 114 CLAPFVKVLDQKFGIIKGTMTT 135
+ +++ + K+ I T
Sbjct: 146 AVRAILEMEEDKYKSINKTNKA 167
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 91.9 bits (228), Expect = 2e-23
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 54 GGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 113
TGVF E A H + GAKKV+I+AP D P +V GVN + Y D ++SNAS
Sbjct: 93 ESTGVFTTIEKASAHFKGGAKKVIISAPSA-DAPMFVCGVNLEKYSKDMKVVSNASNEFG 151
Query: 114 CLAPFVKVLDQKFGI 128
+ ++ +
Sbjct: 152 YSQRVIDLIKHMQKV 166
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 91.2 bits (226), Expect = 4e-23
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVN-ADAYKPDEPIISNASCTTN 113
T + + + +AG K + ++V N A + + +
Sbjct: 87 TPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENID 146
Query: 114 CLAPFVKVLDQKFGIIKGTMT 134
+ ++ D+ I K +
Sbjct: 147 AIRAMFELADKWDSIKKTNKS 167
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 89.2 bits (221), Expect = 2e-22
Identities = 45/74 (60%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCT---T 112
TGVFVDR+GAGKH+QAGAKKVLITAPGKGDIPTYVVGVN + Y + IISNAS +
Sbjct: 98 TGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYS 157
Query: 113 NCLAPFVKVLDQKF 126
+ ++ K+
Sbjct: 158 QRVVDLADIVANKW 171
Score = 30.3 bits (68), Expect = 0.15
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 266 KVIAWYDNEWGYSQRVVDLADIVANNWK 293
+I+ NEWGYSQRVVDLADIVAN W+
Sbjct: 145 TIISNASNEWGYSQRVVDLADIVANKWQ 172
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 88.0 bits (218), Expect = 6e-22
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TGVF E AG H+Q GAK+V+I+AP P +V+GVN + Y IISNAS
Sbjct: 97 TGVFTTMEKAGAHLQGGAKRVIISAPSADA-PMFVMGVNHEKYDNSLKIISNASNEFGYS 155
Query: 116 APFVKVL 122
V ++
Sbjct: 156 NRVVDLM 162
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 86.3 bits (213), Expect = 4e-21
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 55 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTN 113
TG+F + A H++ GA+KV+I+AP G T V+GVN Y P E ++SNA
Sbjct: 110 STGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWG 169
Query: 114 CLAPFVKVLDQKFGI 128
V ++
Sbjct: 170 YSHRVVDLVRHMASK 184
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 84.2 bits (208), Expect = 2e-20
Identities = 35/68 (51%), Positives = 42/68 (61%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TGVF +RE A H+QAGAKKV+ITAP KG+ T V+G N D KP+ IIS AS
Sbjct: 97 TGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYS 156
Query: 116 APFVKVLD 123
V L+
Sbjct: 157 NRVVDTLE 164
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 83.2 bits (205), Expect = 3e-20
Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNC 114
TG F RE A KH++AGAKKV+I+AP K + T V+GVN D Y P +ISNAS T
Sbjct: 96 TGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGY 155
Query: 115 LAPFVKVLDQKFGIIKG 131
V + + KG
Sbjct: 156 SHRVVDLAA--YIASKG 170
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 82.3 bits (203), Expect = 7e-20
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 115
TG+F+ E A KHI AGAKKV++T P K + P +V G N D Y + I+SNAS T
Sbjct: 96 TGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQD-IVSNASNETGYS 154
Query: 116 APFVKVL 122
+ ++
Sbjct: 155 NKVLDLI 161
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 79.4 bits (195), Expect = 9e-19
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 54 GGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCT- 111
TGVF D + A H++ GAKKV+ITAP KG+ T V+GVN +AY P IISNAS
Sbjct: 92 ESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEW 151
Query: 112 --TNCLAPFVKVLDQK 125
N +A V+++ +K
Sbjct: 152 GYANRVADLVELVLRK 167
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 77.4 bits (190), Expect = 5e-18
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASCTTNC 114
TG F +E AG HI+ GAKKV+I+APG D T V GVN K + +ISNA
Sbjct: 99 TGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD----- 153
Query: 115 LAPFVKVLDQKFGIIKGTMTTTHSYT 140
++G + TT +
Sbjct: 154 ---------NEWGFSNRMLDTTVALM 170
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 77.0 bits (189), Expect = 6e-18
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 54 GGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 113
TGVF+ +E A H++ GAKKV+++AP K D P YV+G+N Y + I+SNAS
Sbjct: 94 ESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASN--- 150
Query: 114 CLAPFVKVLDQKFGI 128
+VLD I
Sbjct: 151 EWGYSNRVLDLAVHI 165
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 76.6 bits (188), Expect = 1e-17
Identities = 10/94 (10%), Positives = 32/94 (34%), Gaps = 17/94 (18%)
Query: 56 TGVFVDREGAGKHIQAGAKKVLITAPGKGDI--PTYVVGVNADAYKPDE--PIISNASCT 111
T V + ++Q + + K ++ ++ N + + ++S +
Sbjct: 85 TPNGVGAQYKPIYLQLQ-RNAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVV 143
Query: 112 TNCLAPF------------VKVLDQKFGIIKGTM 133
+ +++ ++ GI+KG +
Sbjct: 144 PENIDAIRASMKLMSAEDSMRITNESLGILKGYL 177
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 39.4 bits (92), Expect = 1e-04
Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 12/119 (10%)
Query: 109 SCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTST 168
SC T L + + + + M + D R I PT
Sbjct: 1 SCNTTGLVRTLSAIREYADYVYAVMIRRAADPND------------TKRGPINAIKPTVE 48
Query: 169 GAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNEL 227
+ V + + +A VPT + V ++V++ K ++V F + L
Sbjct: 49 VPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLL 107
>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406
{Nitrosomonas europaea [TaxId: 915]}
Length = 328
Score = 28.5 bits (63), Expect = 0.87
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 243 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWG 276
+ S+ V + D V AW D EW
Sbjct: 161 YYYSEPHLQVSGIINRQGEDIPVTGTAWLDREWS 194
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 27.5 bits (60), Expect = 1.8
Identities = 7/32 (21%), Positives = 19/32 (59%)
Query: 110 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTG 141
C+T + ++ + QK+G+ + ++T + +G
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSG 32
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 26.2 bits (56), Expect = 3.7
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 104 IISNASCTTNCLAPFVKVLDQKFGIIK 130
+I+ A V+ + +FG +
Sbjct: 148 LIAVPGLLKGAAAQAVQCANIRFGFAE 174
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 26.0 bits (56), Expect = 4.4
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 104 IISNASCTTNCLAPFVKVLDQKFGIIK 130
++ N V+ ++ FG+ +
Sbjct: 139 VVGNPGLVKGASGQAVQNMNIMFGLDE 165
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 25.9 bits (56), Expect = 4.9
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 110 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTG 141
CT + + + L ++ + + T + +G
Sbjct: 2 CTVSLMLMALGGLYERGLVEWMSAMTYQAASG 33
>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 154
Score = 25.6 bits (55), Expect = 5.3
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 86 IPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGI 128
+P V VNA A II+ + N + + L ++ +
Sbjct: 103 VPLVVPEVNAHALDAHNGIIACPNAAWNSVQI-AETLHERGLV 144
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 221
Score = 25.5 bits (55), Expect = 7.6
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 110 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTG 141
CT + + + L + ++ T + +G
Sbjct: 2 CTVSLMLMSLGGLFANDLVDWVSVATYQAASG 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.373
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,017,363
Number of extensions: 44479
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 33
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)