Query 022707
Match_columns 293
No_of_seqs 85 out of 87
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 09:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022707.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022707hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lv7a_ c.37.1.20 (A:) AAA dom 97.9 1.6E-05 1.2E-09 67.8 9.4 141 2-158 70-215 (256)
2 d1e32a2 c.37.1.20 (A:201-458) 97.6 2.4E-05 1.8E-09 65.5 5.4 140 2-158 63-205 (258)
3 d1ixza_ c.37.1.20 (A:) AAA dom 97.6 1.9E-05 1.4E-09 66.7 4.7 141 1-157 66-211 (247)
4 d1r7ra3 c.37.1.20 (A:471-735) 97.1 0.00012 9.1E-09 61.6 3.6 128 1-144 65-196 (265)
5 d1d2na_ c.37.1.20 (A:) Hexamer 93.2 0.066 4.8E-06 44.2 6.0 140 2-159 65-205 (246)
6 d1ofha_ c.37.1.20 (A:) HslU {H 91.2 0.063 4.6E-06 45.4 3.5 100 1-104 73-175 (309)
7 d1svma_ c.37.1.20 (A:) Papillo 88.3 0.15 1.1E-05 44.9 3.7 70 96-170 256-330 (362)
8 d1w44a_ c.37.1.11 (A:) NTPase 80.3 1.5 0.00011 38.3 6.4 119 3-139 151-274 (321)
9 d1sxja2 c.37.1.20 (A:295-547) 75.2 1.3 9.4E-05 34.1 4.0 94 38-157 121-217 (253)
10 d1iqpa2 c.37.1.20 (A:2-232) Re 66.9 1.6 0.00011 33.6 2.7 108 22-157 89-201 (231)
11 d1ixsb2 c.37.1.20 (B:4-242) Ho 52.9 3.4 0.00025 31.8 2.4 65 93-157 132-198 (239)
12 d3c7bb3 d.134.1.1 (B:123-196,B 43.7 5.1 0.00037 31.4 2.1 42 143-190 106-147 (179)
13 d1sxje2 c.37.1.20 (E:4-255) Re 32.6 6.2 0.00045 30.0 0.9 61 95-157 160-224 (252)
14 d3c7ba3 d.134.1.1 (A:167-238,A 31.1 11 0.00078 29.4 2.1 44 143-192 102-145 (185)
15 d1zj8a3 d.134.1.1 (A:407-555) 30.5 6.3 0.00046 29.2 0.6 40 143-188 109-148 (149)
16 d1aopa4 d.134.1.1 (A:426-570) 29.4 8.2 0.0006 29.3 1.1 38 143-186 96-133 (145)
17 d1njfa_ c.37.1.20 (A:) delta p 28.3 16 0.0012 28.3 2.8 91 38-155 113-205 (239)
18 d2f3na1 a.60.1.2 (A:2-65) Sh3 28.2 14 0.00099 23.8 1.9 50 174-225 7-56 (64)
19 d1t6la1 d.131.1.2 (A:10-135) U 24.5 11 0.00079 29.6 1.0 34 41-82 56-90 (126)
20 d1sxjc2 c.37.1.20 (C:12-238) R 21.6 14 0.001 27.8 1.0 62 96-158 129-192 (227)
No 1
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=97.95 E-value=1.6e-05 Score=67.78 Aligned_cols=141 Identities=23% Similarity=0.282 Sum_probs=101.3
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCC-cCCC-CcceeecchhhhhhhhhhccC
Q 022707 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG-RMGG-TTQYTVNNQMVNATLMNIADN 79 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~G-rf~~-~TQ~TVNnQ~V~aTLMNiaDn 79 (293)
|+..+.++.++|.+.+.|+-.+.||+=+..| ++...|+|||.|+|+-.+ |-.+ ......-.+ +.++|++.-|+
T Consensus 70 ~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A----~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~-~~~~ll~~~d~ 144 (256)
T d1lv7a_ 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQ-TLNQMLVEMDG 144 (256)
T ss_dssp TCCEEEECSCSSTTSCCCCCHHHHHHHHHHH----HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHH-HHHHHHHHHHT
T ss_pred CCCEEEEEhHHhhhcchhHHHHHHHHHHHHH----HHcCCEEEEEEChhhhCccCCCCCCCCcHHHHH-HHHHHHHHhhC
Confidence 6677899999999999999998888777666 567889999999998432 2211 112222223 34667666554
Q ss_pred CCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCcccccc--CcCCccchhhhhcccccCCCC-hHHHHHHhhhC
Q 022707 80 PTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTF 156 (293)
Q Consensus 80 Pt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW--~Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~F 156 (293)
.. ...+|=||.|-|+...|=..|+|-||.|+... -|+.++|..|+....+.=.++ ..++..|+..-
T Consensus 145 ~~-----------~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t 213 (256)
T d1lv7a_ 145 FE-----------GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGT 213 (256)
T ss_dssp CC-----------SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC
T ss_pred CC-----------CCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhC
Confidence 31 22457788899999999889999999986443 389999999998887665554 45677777655
Q ss_pred CC
Q 022707 157 PG 158 (293)
Q Consensus 157 p~ 158 (293)
+|
T Consensus 214 ~G 215 (256)
T d1lv7a_ 214 PG 215 (256)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 2
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.64 E-value=2.4e-05 Score=65.54 Aligned_cols=140 Identities=24% Similarity=0.328 Sum_probs=101.2
Q ss_pred CCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCC
Q 022707 2 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 81 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt 81 (293)
|...+.++++.|.+.+.|+..+.||.-+..|. +.+.|+|||-|+|+=++.-+. ..-.+.++++ ..+++..+.
T Consensus 63 ~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~----~~~p~il~iDeid~l~~~r~~-~~~~~~~~~~-~~~~~~~~~-- 134 (258)
T d1e32a2 63 GAFFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREK-THGEVERRIV-SQLLTLMDG-- 134 (258)
T ss_dssp TCEEEEECHHHHTTSCTTHHHHHHHHHHHHHH----HTCSEEEEESSGGGTCCHHHH-CCCTTHHHHH-HHHHHHHHT--
T ss_pred CCeEEEEEchhhcccccccHHHHHHHHHHHHH----hcCCeEEEehhhhhhccCCCC-CCCchHHHHH-HHhcccccc--
Confidence 56678899999999999999999987766654 568999999999997665432 1222223333 344444432
Q ss_pred ccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccC--cCCccchhhhhcccccCCCCh-HHHHHHhhhCCC
Q 022707 82 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPG 158 (293)
Q Consensus 82 ~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~--Ptred~i~iv~~if~~Dg~~~-~dv~~LVd~Fp~ 158 (293)
.....+|-||.|=|+...|=--|.|-||+|+.+.= |+.++|..|...+++.-.++. .++..|+..-.|
T Consensus 135 ---------~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G 205 (258)
T d1e32a2 135 ---------LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 205 (258)
T ss_dssp ---------CCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTT
T ss_pred ---------ccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccC
Confidence 12234688999999988887779999999986653 999999999998887654443 367777777665
No 3
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=97.63 E-value=1.9e-05 Score=66.66 Aligned_cols=141 Identities=21% Similarity=0.272 Sum_probs=95.3
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeec--chhhhhhhhhhcc
Q 022707 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVN--NQMVNATLMNIAD 78 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVN--nQ~V~aTLMNiaD 78 (293)
+|+.-+.++++.|-+.+-|+..+.|++=+.+| ++...|+|||.|+|+=.+.-+ ..+-..+ .+-+..+|++.-|
T Consensus 66 ~~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a----~~~~p~Ii~iDeid~l~~~r~-~~~~~~~~~~~~~~~~ll~~~d 140 (247)
T d1ixza_ 66 ARVPFITASGSDFVEMFVGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRG-SGVGGGNDEREQTLNQLLVEMD 140 (247)
T ss_dssp TTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHH----TTSSSEEEEEETHHHHHC----------CHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEhHHhhhccccHHHHHHHHHHHHH----HHcCCEEEEEEChhhhCccCC-CCCCCCcHHHHHHHHHHHHHhh
Confidence 46777889999999999999999988666554 566789999999997443322 1111111 1224466777766
Q ss_pred CCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccc-cccC-cCCccchhhhhcccccCCCC-hHHHHHHhhh
Q 022707 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEK-FYWA-PTREDRIGVCKGIFRNDNVA-DDDIVKLVDT 155 (293)
Q Consensus 79 nPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeK-FYW~-Ptred~i~iv~~if~~Dg~~-~~dv~~LVd~ 155 (293)
+.. ...+|=+|.|-|+...|=..|+|-||+|+ ++-. |+.++|..|++.+.+.-.+. ..++..|...
T Consensus 141 ~~~-----------~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~ 209 (247)
T d1ixza_ 141 GFE-----------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 209 (247)
T ss_dssp TCC-----------TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT
T ss_pred CCC-----------CCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHH
Confidence 432 12456677799999988888999999984 4444 89999999998887654433 3345555554
Q ss_pred CC
Q 022707 156 FP 157 (293)
Q Consensus 156 Fp 157 (293)
-+
T Consensus 210 t~ 211 (247)
T d1ixza_ 210 TP 211 (247)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 4
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.11 E-value=0.00012 Score=61.62 Aligned_cols=128 Identities=21% Similarity=0.322 Sum_probs=88.1
Q ss_pred CCCcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCC-C-Ccceeecchhhhhhhhhhcc
Q 022707 1 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-G-TTQYTVNNQMVNATLMNIAD 78 (293)
Q Consensus 1 MGi~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~-~-~TQ~TVNnQ~V~aTLMNiaD 78 (293)
+|+.-+.+|++.+-+.+.|+....||+=+..| +....|+|||-|+|+=...-+ . .-.+....|++ .+|++.-|
T Consensus 65 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A----~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~-~~ll~~l~ 139 (265)
T d1r7ra3 65 CQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI-NQILTEMD 139 (265)
T ss_dssp TTCEEEEECHHHHHTSCTTTHHHHHHHHHHHH----HHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHH-HHHHHTCC
T ss_pred hCCcEEEEEHHHhhhccccchHHHHHHHHHHH----HhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHH-HHHHHHhh
Confidence 46777899999999999999988888766666 445679999999996443321 1 11223334444 45666554
Q ss_pred CCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccc--cCcCCccchhhhhcccccCCC
Q 022707 79 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVCKGIFRNDNV 144 (293)
Q Consensus 79 nPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFY--W~Ptred~i~iv~~if~~Dg~ 144 (293)
+-. ...+|-+|.|-|+...|=-.|.|-||.++.+ =-|++++|..|...+++.-.+
T Consensus 140 ~~~-----------~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~ 196 (265)
T d1r7ra3 140 GMS-----------TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV 196 (265)
T ss_dssp -----------------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC--
T ss_pred CcC-----------CCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCc
Confidence 321 2346889999999998777788889987633 239999999999887765433
No 5
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=93.21 E-value=0.066 Score=44.19 Aligned_cols=140 Identities=11% Similarity=0.156 Sum_probs=79.0
Q ss_pred CCcceeecccccCCCCCCC-chHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCC
Q 022707 2 GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 80 (293)
Q Consensus 2 Gi~pI~mSAGELEs~~AGe-ParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnP 80 (293)
|+.-+.+++.++-++.-|. ..+.||+ +.+..++...|+|||.|+|+-.+.-..+.. ..+.++ .+|+++-|..
T Consensus 65 ~~~~~~i~~~~~~~g~~~~~~~~~i~~----if~~A~~~~p~il~iDEid~l~~~~~~~~~--~~~~~~-~~ll~~l~~~ 137 (246)
T d1d2na_ 65 NFPFIKICSPDKMIGFSETAKCQAMKK----IFDDAYKSQLSCVVVDDIERLLDYVPIGPR--FSNLVL-QALLVLLKKA 137 (246)
T ss_dssp TCSEEEEECGGGCTTCCHHHHHHHHHH----HHHHHHTSSEEEEEECCHHHHTTCBTTTTB--CCHHHH-HHHHHHTTCC
T ss_pred cccccccccccccccccccchhhhhhh----hhhhhhhcccceeehhhhhhHhhhcccccc--hhHHHH-HHHHHHhcCC
Confidence 4444566665544443332 2355554 444456778899999999985443321111 123333 4566665532
Q ss_pred CccCCCCcCCCCCCCCCCEEEecCCccccccccccCCCccccccCcCCccchhhhhcccccCCCChHHHHHHhhhCCCC
Q 022707 81 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQ 159 (293)
Q Consensus 81 t~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~~~~dv~~LVd~Fp~Q 159 (293)
. ....+|=||.|=|....|=.+.++ +|.++-..=|....+-.++..+-.....+..+...+.+...+.
T Consensus 138 ~----------~~~~~v~vi~tTn~~~~ld~~~~~-~rF~~~i~~P~~~~r~~il~~l~~~~~~~~~~~~~i~~~~~g~ 205 (246)
T d1d2na_ 138 P----------PQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK 205 (246)
T ss_dssp C----------STTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTS
T ss_pred C----------ccccceeeeeccCChhhccchhhc-CccceEEecCCchhHHHHHHHHHhccCCChHHHHHHHHHcCCC
Confidence 1 223567788899987766555565 6887655557765555555433333445555555555555543
No 6
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=91.24 E-value=0.063 Score=45.43 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=63.9
Q ss_pred CCCcceeecccccC--CCCCCCchHHHHHHHHHHHHHHh-cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhc
Q 022707 1 MGINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 77 (293)
Q Consensus 1 MGi~pI~mSAGELE--s~~AGeParLIR~RYReAae~ik-~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNia 77 (293)
|+..-+.++++|+- |.+.|+.++.+|.-..+|-..+. +.+-|++||..||.=..+.. ++-..|.+.-|..+|..+-
T Consensus 73 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~-~~~~~~~~~gv~~~LL~~~ 151 (309)
T d1ofha_ 73 ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLV 151 (309)
T ss_dssp HTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS-CCSSHHHHHHHHHHHHHHH
T ss_pred cccchhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhcc-CcccchhhhHHHHHhhHHh
Confidence 35677899999996 66899999999988888766655 55569999999998433332 2333344444445565666
Q ss_pred cCCCccCCCCcCCCCCCCCCCEEEecC
Q 022707 78 DNPTCVQLPGMYNKEENPRVPIIVTGN 104 (293)
Q Consensus 78 DnPt~Vqlpg~y~~~~~~RVPIIVTGN 104 (293)
|+ +.++... ..-.+..|-+|.||+
T Consensus 152 dg-~~~~~~~--~~i~~s~ilfi~~ga 175 (309)
T d1ofha_ 152 EG-STVSTKH--GMVKTDHILFIASGA 175 (309)
T ss_dssp HC-CEEEETT--EEEECTTCEEEEEEC
T ss_pred cC-CEEecCC--eEEEccceeEEeccc
Confidence 64 3333211 011234677788875
No 7
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=88.29 E-value=0.15 Score=44.87 Aligned_cols=70 Identities=17% Similarity=0.103 Sum_probs=50.0
Q ss_pred CCCEEEecCCccccccccccCCCcccc---ccCcCCccchhhhhcccccCCCC--hHHHHHHhhhCCCCcchhHhhhhhh
Q 022707 96 RVPIIVTGNDFSTLYAPLIRDGRMEKF---YWAPTREDRIGVCKGIFRNDNVA--DDDIVKLVDTFPGQSIDFFGALRAR 170 (293)
Q Consensus 96 RVPIIVTGNDfStLYAPLiRDGRMeKF---YW~Ptred~i~iv~~if~~Dg~~--~~dv~~LVd~Fp~Q~iDFFGALRaR 170 (293)
--|+|+|-|| ++.|++|-||.+++ .+.|+.+..+.+...+.+...+. .+.+..|+..||+- ||-..++..
T Consensus 256 ~~p~i~ttN~---~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~--D~~~~i~~~ 330 (362)
T d1svma_ 256 FPPGIVTMNE---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVA--EFAQSIQSR 330 (362)
T ss_dssp CCCEEEEECS---CCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGG--GSCGGGHHH
T ss_pred cCCceeeccc---ccccccccccCceEEeecCCCcHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHH--HHHHHHHHH
Confidence 3489999997 57888888887664 45666666667777777777665 34466777788775 776766654
No 8
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=80.26 E-value=1.5 Score=38.32 Aligned_cols=119 Identities=14% Similarity=0.065 Sum_probs=76.9
Q ss_pred CcceeecccccCCCCCCCchHHHHHHHHHHHHHHhcccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCc
Q 022707 3 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 82 (293)
Q Consensus 3 i~pI~mSAGELEs~~AGeParLIR~RYReAae~ik~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~ 82 (293)
+.++.++.+|+-|.+-|+-.+.||.=+++|. +.|+|||-.||+=.|.-+++..-.+..++||--|-.+ |.-
T Consensus 151 ~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~------~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~-dg~-- 221 (321)
T d1w44a_ 151 DKYATVRFGEPLSGYNTDFNVFVDDIARAML------QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDI-GAM-- 221 (321)
T ss_dssp SCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH------HCSEEEEECCTTTC-----------CCHHHHHHHHHH-HHH--
T ss_pred CCeEEEEhhHhhhcccchHHHHHHHHHHHHh------hccEEEeehhhhhccccccCCCCCcchhhhhhhhhhc-ccc--
Confidence 5678899999999999999999999888884 2689999999997665543333344445555444322 100
Q ss_pred cCCCCcCCCCCCCCCCEEEecCCc---cccccccccCCCcccc--ccCcCCccchhhhhccc
Q 022707 83 VQLPGMYNKEENPRVPIIVTGNDF---STLYAPLIRDGRMEKF--YWAPTREDRIGVCKGIF 139 (293)
Q Consensus 83 Vqlpg~y~~~~~~RVPIIVTGNDf---StLYAPLiRDGRMeKF--YW~Ptred~i~iv~~if 139 (293)
.....|-+|.|=|=. -+|-.||.|-||-|.. .=.|+.+++..|+....
T Consensus 222 ---------~~~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il~~~~ 274 (321)
T d1w44a_ 222 ---------AASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTG 274 (321)
T ss_dssp ---------HHHHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEEEEECB
T ss_pred ---------ccCCCeEEEEeCCCcccccchhhhhhccCcccceeecCCCChHHHHHHHHHhc
Confidence 011346777777832 2345567888887765 34599999999987553
No 9
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.19 E-value=1.3 Score=34.13 Aligned_cols=94 Identities=16% Similarity=0.201 Sum_probs=62.2
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCcc-ccccccccC
Q 022707 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRD 116 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfS-tLYAPLiRD 116 (293)
.++..+++|.++|.= +-+-|....++|..... ..+|||+|+|+-+ ....||-|-
T Consensus 121 ~~~~~vi~ide~~~~----------~~~~~~~~~~~~~~~~~---------------~~~~ii~i~~~~~~~~~~~l~~~ 175 (253)
T d1sxja2 121 NGKHFVIIMDEVDGM----------SGGDRGGVGQLAQFCRK---------------TSTPLILICNERNLPKMRPFDRV 175 (253)
T ss_dssp STTSEEEEECSGGGC----------CTTSTTHHHHHHHHHHH---------------CSSCEEEEESCTTSSTTGGGTTT
T ss_pred cccceEEEeeecccc----------ccchhhhhHHHhhhhcc---------------cccccccccccccccccccccce
Confidence 678889999887751 11223444455555432 3358999998754 356666544
Q ss_pred CCccccccCcCCccchhhhhcccccCC--CChHHHHHHhhhCC
Q 022707 117 GRMEKFYWAPTREDRIGVCKGIFRNDN--VADDDIVKLVDTFP 157 (293)
Q Consensus 117 GRMeKFYW~Ptred~i~iv~~if~~Dg--~~~~dv~~LVd~Fp 157 (293)
.++-+| =.|+.+++..++..|.+..| ++.+++..|+....
T Consensus 176 ~~~i~f-~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~ 217 (253)
T d1sxja2 176 CLDIQF-RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTR 217 (253)
T ss_dssp SEEEEC-CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTT
T ss_pred eeeeec-cccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence 333332 35899999999998887665 56778999998764
No 10
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=66.92 E-value=1.6 Score=33.60 Aligned_cols=108 Identities=18% Similarity=0.219 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHHh--cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCE
Q 022707 22 AKLIRQRYREAADIIK--KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 99 (293)
Q Consensus 22 arLIR~RYReAae~ik--~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPI 99 (293)
.+.+|.+|.+...... ..+..+++|.|+|.-... .|. .|.++...+ ...+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~----------~~~---~ll~~l~~~-------------~~~~~~ 142 (231)
T d1iqpa2 89 INVIREKVKEFARTKPIGGASFKIIFLDEADALTQD----------AQQ---ALRRTMEMF-------------SSNVRF 142 (231)
T ss_dssp HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH----------HHH---HHHHHHHHT-------------TTTEEE
T ss_pred hhHHHHHHHHHHhhhhccCCCceEEeehhhhhcchh----------HHH---HHhhhcccC-------------CcceEE
Confidence 3567888888776654 557889999999733221 121 233333221 234678
Q ss_pred EEecCCccccccccccCCCccccccC-cCCccchhhhhcccccCCC--ChHHHHHHhhhCC
Q 022707 100 IVTGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFP 157 (293)
Q Consensus 100 IVTGNDfStLYAPLiRDGRMeKFYW~-Ptred~i~iv~~if~~Dg~--~~~dv~~LVd~Fp 157 (293)
|.|-|.++.+-.+|.. |...+.-. |+.++...++..+.+..++ +.+.++.++..+-
T Consensus 143 i~~~n~~~~i~~~l~s--R~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~ 201 (231)
T d1iqpa2 143 ILSCNYSSKIIEPIQS--RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAE 201 (231)
T ss_dssp EEEESCGGGSCHHHHH--TEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHT
T ss_pred EeccCChhhchHhHhC--ccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 9999999999888764 44444443 7778888899999888886 6778888887653
No 11
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=52.95 E-value=3.4 Score=31.78 Aligned_cols=65 Identities=17% Similarity=0.055 Sum_probs=52.1
Q ss_pred CCCCCCEEEecCCccccccccccCCCccccccCcCCccchhhhhcccccCCCC--hHHHHHHhhhCC
Q 022707 93 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVA--DDDIVKLVDTFP 157 (293)
Q Consensus 93 ~~~RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~~--~~dv~~LVd~Fp 157 (293)
+.+|+++|++-|.....-.|++|.+......=.|+.+++..++..+....++. .+.+..++..=-
T Consensus 132 ~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~ 198 (239)
T d1ixsb2 132 ELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSR 198 (239)
T ss_dssp ECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTT
T ss_pred CCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcC
Confidence 46899999999999999999999988888888899999999998888777654 455555554443
No 12
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=43.71 E-value=5.1 Score=31.43 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=31.8
Q ss_pred CCChHHHHHHhhhCCCCcchhHhhhhhhhhhHHHHHHHhhhccccccc
Q 022707 143 NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 190 (293)
Q Consensus 143 g~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~vG~e~ig~ 190 (293)
.++.+++..+|.+. |++|-+-|. +.+-+.+||+++|++.+-+
T Consensus 106 ~~~~~~v~~~v~~i----l~~Y~e~~~--~~Erf~~~i~RvG~~~f~e 147 (179)
T d3c7bb3 106 PPRWPTLVKYVKQI----LEAWAANAN--KHERLIEWVDRIGWERFFE 147 (179)
T ss_dssp TTTCHHHHHHHHHH----HHHHHHHCC--TTCCHHHHHHHHCHHHHHH
T ss_pred CcchhHHHHHHHHH----HHHHHHhCc--chhHHHHHHHHcCcHHHHH
Confidence 35567777777765 788888763 5788999999999987543
No 13
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.56 E-value=6.2 Score=29.96 Aligned_cols=61 Identities=13% Similarity=0.281 Sum_probs=43.9
Q ss_pred CCCCEEEecCCccccccccccCCCcccccc-CcCCccchhhhhcccccCCCC---hHHHHHHhhhCC
Q 022707 95 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA---DDDIVKLVDTFP 157 (293)
Q Consensus 95 ~RVPIIVTGNDfStLYAPLiRDGRMeKFYW-~Ptred~i~iv~~if~~Dg~~---~~dv~~LVd~Fp 157 (293)
..+-+|.|.|+...+-.||. .|...++- .|+.++...++..+++..++. ++-++.|+....
T Consensus 160 ~~~~~Il~tn~~~~i~~~l~--sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~ 224 (252)
T d1sxje2 160 KNIRLIMVCDSMSPIIAPIK--SQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASN 224 (252)
T ss_dssp TTEEEEEEESCSCSSCHHHH--TTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHT
T ss_pred ccccceeeeccccchhhhhh--cchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcC
Confidence 34568889999999988876 46777665 488899999999888876653 333455665433
No 14
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=31.13 E-value=11 Score=29.41 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=34.3
Q ss_pred CCChHHHHHHhhhCCCCcchhHhhhhhhhhhHHHHHHHhhhccccccccc
Q 022707 143 NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSL 192 (293)
Q Consensus 143 g~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~vG~e~ig~~l 192 (293)
.++.++|..+|++. ||||-.-+ -..+-+.+||.++|+|.+=+.|
T Consensus 102 ~~~~dev~~~v~~i----i~~y~e~g--~~~ER~g~~ieRvGle~fke~l 145 (185)
T d3c7ba3 102 EKPYDEIKEILEAI----WDWWDEEG--KFRERIGELIWRKGMREFLKVI 145 (185)
T ss_dssp CTTCHHHHHHHHHH----HHHHHHHC--CTTCCHHHHHHHHCHHHHHHHT
T ss_pred CCCHHHHHHHHHHH----HHHHHHhC--CCcchHHHHHHHcChHHHHHHH
Confidence 45678888888864 78997654 4678888999999999986555
No 15
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.54 E-value=6.3 Score=29.25 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCChHHHHHHhhhCCCCcchhHhhhhhhhhhHHHHHHHhhhccccc
Q 022707 143 NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSI 188 (293)
Q Consensus 143 g~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~vG~e~i 188 (293)
.++.++|..+|++. |++|.+- |-.++-+.+||+++|.|.+
T Consensus 109 ~v~~~~v~~~v~~i----i~~y~~~--~~~~Erf~~~i~R~G~e~~ 148 (149)
T d1zj8a3 109 KVTSDELGDYIDRV----VRNFVKH--RSEGERFAQWVIRAEEDDL 148 (149)
T ss_dssp CEETTTHHHHHHHH----HHHHHHS--CCTTCCHHHHHHHSCGGGG
T ss_pred cchHHHHHHHHHHH----HHHHHHh--cCCCCCHHHHHHHcChhhc
Confidence 46677777777754 6888764 3457779999999999875
No 16
>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
Probab=29.44 E-value=8.2 Score=29.28 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=31.4
Q ss_pred CCChHHHHHHhhhCCCCcchhHhhhhhhhhhHHHHHHHhhhccc
Q 022707 143 NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVG 186 (293)
Q Consensus 143 g~~~~dv~~LVd~Fp~Q~iDFFGALRaR~YDd~Vr~wi~~vG~e 186 (293)
.++.+++..+|++. |++|.+- |-.++...+||.++|++
T Consensus 96 ~v~~~ev~~~v~~i----l~~Y~~~--~~~~Erf~~~i~R~G~~ 133 (145)
T d1aopa4 96 NITEPEILASLDEL----IGRWAKE--REAGEGFGDFTVRAGII 133 (145)
T ss_dssp EEEHHHHHHHHHHH----HHHHHHH--CCTTCCHHHHHHHTTSS
T ss_pred cCCHHHHHHHHHHH----HHHHHHh--CcCCCcHHHHHHHcCch
Confidence 46788898888876 7888874 55788899999999985
No 17
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=28.33 E-value=16 Score=28.30 Aligned_cols=91 Identities=13% Similarity=0.202 Sum_probs=59.8
Q ss_pred cccceEEEeecccccCCcCCCCcceeecchhhhhhhhhhccCCCccCCCCcCCCCCCCCCCEEEecCCccccccccccCC
Q 022707 38 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 117 (293)
Q Consensus 38 ~GkM~~L~INDLDAG~Grf~~~TQ~TVNnQ~V~aTLMNiaDnPt~Vqlpg~y~~~~~~RVPIIVTGNDfStLYAPLiRDG 117 (293)
.|+..+++|+++|. + |.+..++ |..+-.+| .+.+-+|.+-|+.+.|..||....
T Consensus 113 ~~~~kviiIde~d~----l--------~~~~q~~-Llk~lE~~-------------~~~~~~il~tn~~~~i~~~i~SRc 166 (239)
T d1njfa_ 113 RGRFKVYLIDEVHM----L--------SRHSFNA-LLKTLEEP-------------PEHVKFLLATTDPQKLPVTILSRC 166 (239)
T ss_dssp SSSSEEEEEETGGG----S--------CHHHHHH-HHHHHHSC-------------CTTEEEEEEESCGGGSCHHHHTTS
T ss_pred cCCCEEEEEECccc----C--------CHHHHHH-HHHHHhcC-------------CCCeEEEEEcCCccccChhHhhhh
Confidence 58888999999983 2 1222332 33333333 345568999999999999998777
Q ss_pred CccccccCcCCccchhhhhcccccC--CCChHHHHHHhhh
Q 022707 118 RMEKFYWAPTREDRIGVCKGIFRND--NVADDDIVKLVDT 155 (293)
Q Consensus 118 RMeKFYW~Ptred~i~iv~~if~~D--g~~~~dv~~LVd~ 155 (293)
++=.|.. |+.++...++..+.+.. .++++.++.|+..
T Consensus 167 ~~i~~~~-~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~ 205 (239)
T d1njfa_ 167 LQFHLKA-LDVEQIRHQLEHILNEEHIAHEPRALQLLARA 205 (239)
T ss_dssp EEEECCC-CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH
T ss_pred ccccccc-CcHHHhhhHHHHHHhhhccCCCHHHHHHHHHH
Confidence 7655544 77778888887776544 3445555555543
No 18
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=28.22 E-value=14 Score=23.82 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=31.1
Q ss_pred HHHHHHHhhhcccccccccccCCCCCCcccCCcCCHHHHHHHHHHHHHHHHH
Q 022707 174 DEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQEN 225 (293)
Q Consensus 174 d~Vr~wi~~vG~e~ig~~lvns~~~~p~f~~p~~tl~~Lle~G~~lv~EQe~ 225 (293)
++|.+|+..+|++.....+....=.-..+ +.+|-+.|.+-|=.-..-|..
T Consensus 7 ~~V~~wL~~~gl~~y~~~F~~~~i~g~~L--~~l~~~dL~~lGi~~~g~r~~ 56 (64)
T d2f3na1 7 FDVGDWLESIHLGEHRDRFEDHEIEGAHL--PALTKEDFVELGVTRVGHREN 56 (64)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCCGGGG--GGCCHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCcHHHh--hcCCHHHHHHcCCCCHHHHHH
Confidence 57899999999988887776543222222 347777776655433333333
No 19
>d1t6la1 d.131.1.2 (A:10-135) UL44 {Human cytomegalovirus, HHV-5 [TaxId: 10359]}
Probab=24.47 E-value=11 Score=29.55 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.4
Q ss_pred ceEEEeecccccCCcCCCCcceeecchh-hhhhhhhhccCCCc
Q 022707 41 MCCLMINDLDAGAGRMGGTTQYTVNNQM-VNATLMNIADNPTC 82 (293)
Q Consensus 41 M~~L~INDLDAG~Grf~~~TQ~TVNnQ~-V~aTLMNiaDnPt~ 82 (293)
-+||+|.| | +| ..-|+||+. .-|.+|+|..||..
T Consensus 56 ssCLyitD-~----~F---~~KTINN~vPL~g~fm~l~Sn~dl 90 (126)
T d1t6la1 56 SSCLYITD-K----SF---QPKTINNSTPLLGNFMYLTSSKDL 90 (126)
T ss_dssp GGGEEESC-T----TC---CCEEEESEETTTEEHHHHTTCTTC
T ss_pred ceEEEEec-C----cc---ccccccccchhhhhhhhhccCccc
Confidence 36999999 3 36 367999985 78999999999864
No 20
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.58 E-value=14 Score=27.81 Aligned_cols=62 Identities=13% Similarity=0.126 Sum_probs=46.2
Q ss_pred CCCEEEecCCccccccccccCCCccccccCcCCccchhhhhcccccCCC--ChHHHHHHhhhCCC
Q 022707 96 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFPG 158 (293)
Q Consensus 96 RVPIIVTGNDfStLYAPLiRDGRMeKFYW~Ptred~i~iv~~if~~Dg~--~~~dv~~LVd~Fp~ 158 (293)
.+-+|.+-|..+.+-.||.+....-+|- .|+.+|...++..|.+..|+ +.+.++.|+...-|
T Consensus 129 ~~~~~~~~~~~~~i~~~i~sr~~~i~~~-~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~G 192 (227)
T d1sxjc2 129 NTRFCVLANYAHKLTPALLSQCTRFRFQ-PLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 192 (227)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSEEEECC-CCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ceeeccccCcHHHhHHHHHHHHhhhccc-cccccccccccccccccccccCCHHHHHHHHHHcCC
Confidence 4567788899999998888766555542 57888999999988888864 47777777776543
Done!