Query 022710
Match_columns 293
No_of_seqs 164 out of 1540
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11872 antC anthranilate dio 100.0 3.2E-40 7E-45 301.1 25.9 227 53-292 103-333 (340)
2 cd06189 flavin_oxioreductase N 100.0 1.3E-39 2.7E-44 280.9 24.8 218 59-292 1-222 (224)
3 cd06211 phenol_2-monooxygenase 100.0 1.4E-39 3.1E-44 283.1 25.3 226 56-293 6-237 (238)
4 PRK08345 cytochrome-c3 hydroge 100.0 1E-39 2.2E-44 291.4 24.7 229 53-293 2-245 (289)
5 cd06209 BenDO_FAD_NAD Benzoate 100.0 1.9E-39 4.1E-44 280.4 24.8 219 58-292 3-225 (228)
6 cd06210 MMO_FAD_NAD_binding Me 100.0 2.3E-39 4.9E-44 281.3 24.4 226 58-292 3-233 (236)
7 cd06212 monooxygenase_like The 100.0 3.7E-39 8.1E-44 279.3 24.8 222 58-292 2-229 (232)
8 PRK08051 fre FMN reductase; Va 100.0 5E-39 1.1E-43 278.6 23.9 221 56-292 2-227 (232)
9 cd06188 NADH_quinone_reductase 100.0 2.9E-39 6.2E-44 288.0 22.4 226 55-292 8-281 (283)
10 PRK07609 CDP-6-deoxy-delta-3,4 100.0 7.5E-39 1.6E-43 292.4 25.1 224 55-292 101-330 (339)
11 cd06217 FNR_iron_sulfur_bindin 100.0 1.6E-38 3.4E-43 275.8 25.3 225 56-292 1-233 (235)
12 KOG0534 NADH-cytochrome b-5 re 100.0 2.1E-38 4.6E-43 276.2 25.4 232 50-291 45-285 (286)
13 cd06184 flavohem_like_fad_nad_ 100.0 2.9E-38 6.4E-43 276.2 26.5 226 54-292 4-241 (247)
14 cd06187 O2ase_reductase_like T 100.0 2.8E-38 6E-43 272.3 24.1 217 61-292 1-222 (224)
15 cd06191 FNR_iron_sulfur_bindin 100.0 3.5E-38 7.7E-43 273.0 24.5 220 60-292 2-229 (231)
16 cd06215 FNR_iron_sulfur_bindin 100.0 5.4E-38 1.2E-42 271.7 25.5 222 59-292 1-229 (231)
17 cd06213 oxygenase_e_transfer_s 100.0 6.3E-38 1.4E-42 270.8 24.7 217 58-292 2-225 (227)
18 PTZ00319 NADH-cytochrome B5 re 100.0 7.4E-38 1.6E-42 280.5 25.4 238 48-291 25-299 (300)
19 cd06221 sulfite_reductase_like 100.0 5.8E-38 1.3E-42 275.2 23.8 220 61-292 1-222 (253)
20 cd06190 T4MO_e_transfer_like T 100.0 6.1E-38 1.3E-42 271.7 23.2 217 61-292 1-229 (232)
21 cd06196 FNR_like_1 Ferredoxin 100.0 1.1E-37 2.3E-42 267.7 23.0 212 58-292 2-218 (218)
22 PRK13289 bifunctional nitric o 100.0 2.8E-37 6.1E-42 287.9 26.6 226 54-292 152-390 (399)
23 cd06195 FNR1 Ferredoxin-NADP+ 100.0 2E-37 4.3E-42 270.0 23.8 219 60-292 1-239 (241)
24 cd00322 FNR_like Ferredoxin re 100.0 2.4E-37 5.2E-42 265.8 23.9 215 63-292 2-223 (223)
25 cd06216 FNR_iron_sulfur_bindin 100.0 4.5E-37 9.7E-42 268.1 26.0 221 54-293 15-242 (243)
26 PRK08221 anaerobic sulfite red 100.0 2.6E-37 5.5E-42 272.4 24.4 217 56-292 7-224 (263)
27 PRK10684 HCP oxidoreductase, N 100.0 3E-37 6.5E-42 280.9 25.1 221 57-292 10-235 (332)
28 cd06183 cyt_b5_reduct_like Cyt 100.0 3.5E-37 7.7E-42 266.9 24.4 223 59-291 1-233 (234)
29 COG1018 Hmp Flavodoxin reducta 100.0 8.2E-37 1.8E-41 267.7 26.2 219 55-293 4-229 (266)
30 cd06194 FNR_N-term_Iron_sulfur 100.0 7.4E-37 1.6E-41 263.2 24.1 215 61-292 1-219 (222)
31 PRK10926 ferredoxin-NADP reduc 100.0 1.3E-36 2.7E-41 266.0 25.6 218 55-286 3-233 (248)
32 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 9.6E-37 2.1E-41 279.8 24.5 229 56-292 1-239 (352)
33 PRK05464 Na(+)-translocating N 100.0 8.3E-37 1.8E-41 285.1 24.2 224 57-292 134-405 (409)
34 cd06214 PA_degradation_oxidore 100.0 2.4E-36 5.3E-41 263.0 24.8 226 57-292 2-238 (241)
35 TIGR02911 sulfite_red_B sulfit 100.0 1.7E-36 3.6E-41 267.0 23.8 215 58-292 7-222 (261)
36 PRK05713 hypothetical protein; 100.0 1.5E-36 3.2E-41 274.0 22.8 213 56-292 91-306 (312)
37 TIGR01941 nqrF NADH:ubiquinone 100.0 1.7E-36 3.7E-41 282.6 23.3 225 56-292 129-401 (405)
38 PTZ00274 cytochrome b5 reducta 100.0 5.4E-36 1.2E-40 270.0 24.4 214 53-278 49-281 (325)
39 PLN02252 nitrate reductase [NA 100.0 1.3E-35 2.7E-40 296.3 26.3 236 49-291 627-887 (888)
40 PLN03116 ferredoxin--NADP+ red 100.0 2.5E-35 5.4E-40 265.2 25.7 223 55-285 23-288 (307)
41 cd06208 CYPOR_like_FNR These f 100.0 2.5E-35 5.3E-40 263.0 25.0 220 54-282 6-261 (286)
42 PLN03115 ferredoxin--NADP(+) r 100.0 4E-35 8.8E-40 267.3 25.1 221 53-282 87-341 (367)
43 cd06198 FNR_like_3 NAD(P) bind 100.0 3.5E-35 7.6E-40 251.7 22.1 203 69-292 7-213 (216)
44 PRK06222 ferredoxin-NADP(+) re 100.0 6.9E-35 1.5E-39 259.3 23.0 203 59-285 2-206 (281)
45 cd06218 DHOD_e_trans FAD/NAD b 100.0 1.7E-34 3.8E-39 252.2 23.3 204 61-287 1-207 (246)
46 TIGR03224 benzo_boxA benzoyl-C 100.0 4E-34 8.7E-39 266.2 23.5 220 53-283 139-386 (411)
47 cd06185 PDR_like Phthalate dio 100.0 4.7E-34 1E-38 243.8 22.0 205 62-292 1-208 (211)
48 cd06219 DHOD_e_trans_like1 FAD 100.0 4.6E-34 9.9E-39 249.9 21.7 205 59-286 1-206 (248)
49 PTZ00306 NADH-dependent fumara 100.0 5E-34 1.1E-38 294.8 25.5 235 48-291 906-1160(1167)
50 PRK00054 dihydroorotate dehydr 100.0 1.5E-33 3.3E-38 246.9 23.0 207 55-291 3-211 (250)
51 cd06192 DHOD_e_trans_like FAD/ 100.0 1.8E-33 4E-38 245.4 22.8 206 61-291 1-208 (243)
52 COG0543 UbiB 2-polyprenylpheno 100.0 3.3E-33 7.2E-38 244.4 24.2 209 58-287 9-219 (252)
53 cd06220 DHOD_e_trans_like2 FAD 100.0 3.8E-33 8.3E-38 241.9 23.0 198 59-292 1-198 (233)
54 cd06201 SiR_like2 Cytochrome p 100.0 1.5E-32 3.2E-37 245.2 23.6 212 53-282 42-267 (289)
55 PRK05802 hypothetical protein; 100.0 2.7E-32 5.8E-37 246.1 23.8 215 54-285 62-281 (320)
56 cd06182 CYPOR_like NADPH cytoc 100.0 2.5E-32 5.4E-37 241.1 21.7 200 70-282 16-237 (267)
57 cd06200 SiR_like1 Cytochrome p 100.0 7.2E-32 1.6E-36 235.5 21.6 200 64-281 11-224 (245)
58 cd06197 FNR_like_2 FAD/NAD(P) 100.0 8.4E-32 1.8E-36 231.4 19.8 192 63-292 2-217 (220)
59 COG4097 Predicted ferric reduc 100.0 6.8E-32 1.5E-36 237.3 17.9 214 55-292 214-433 (438)
60 cd06193 siderophore_interactin 100.0 3E-31 6.5E-36 230.3 18.3 207 61-292 1-231 (235)
61 PRK12778 putative bifunctional 100.0 2.1E-30 4.6E-35 258.8 23.1 203 59-285 2-206 (752)
62 PRK12779 putative bifunctional 100.0 6.4E-29 1.4E-33 251.0 25.2 215 56-286 648-873 (944)
63 PRK12775 putative trifunctiona 100.0 1.8E-28 4E-33 249.6 24.8 202 59-284 2-205 (1006)
64 COG2871 NqrF Na+-transporting 100.0 2E-29 4.3E-34 214.6 14.7 229 51-292 130-406 (410)
65 cd06186 NOX_Duox_like_FAD_NADP 100.0 1.6E-28 3.6E-33 209.4 17.5 187 64-292 4-208 (210)
66 cd06199 SiR Cytochrome p450- l 99.9 3.5E-26 7.7E-31 210.0 15.1 183 87-281 130-329 (360)
67 cd06206 bifunctional_CYPOR The 99.9 1E-25 2.2E-30 208.8 14.2 188 88-287 146-355 (384)
68 cd06207 CyPoR_like NADPH cytoc 99.9 3.4E-25 7.3E-30 205.2 16.9 173 103-286 162-356 (382)
69 TIGR01931 cysJ sulfite reducta 99.9 2.8E-25 6E-30 215.7 15.2 183 87-282 367-567 (597)
70 PLN02292 ferric-chelate reduct 99.9 8.2E-24 1.8E-28 205.9 22.5 200 57-271 325-548 (702)
71 cd06203 methionine_synthase_re 99.9 4.5E-24 9.7E-29 198.5 17.3 170 103-280 172-366 (398)
72 cd06202 Nitric_oxide_synthase 99.9 9E-24 1.9E-28 196.9 17.8 170 103-281 175-371 (406)
73 PRK10953 cysJ sulfite reductas 99.9 1.4E-23 2.9E-28 203.2 15.1 183 87-281 370-569 (600)
74 cd06204 CYPOR NADPH cytochrome 99.9 2E-22 4.4E-27 188.3 17.0 168 103-282 176-386 (416)
75 PRK06214 sulfite reductase; Pr 99.9 2.4E-22 5.2E-27 191.0 17.2 169 103-281 314-499 (530)
76 PLN02631 ferric-chelate reduct 99.9 6.9E-22 1.5E-26 192.2 19.5 165 58-235 309-491 (699)
77 PLN02844 oxidoreductase/ferric 99.9 3.1E-21 6.6E-26 188.5 21.8 194 60-270 315-536 (722)
78 KOG3378 Globins and related he 99.9 1.5E-22 3.2E-27 171.5 10.3 215 55-293 148-379 (385)
79 COG0369 CysJ Sulfite reductase 99.8 1.1E-19 2.5E-24 173.9 17.2 169 103-282 371-557 (587)
80 PF00175 NAD_binding_1: Oxidor 99.8 6E-20 1.3E-24 140.1 10.3 104 173-277 1-109 (109)
81 KOG0039 Ferric reductase, NADH 99.8 3.8E-18 8.3E-23 166.7 18.1 212 58-284 356-633 (646)
82 PF00970 FAD_binding_6: Oxidor 99.8 4.4E-18 9.6E-23 127.8 12.3 94 58-157 1-97 (99)
83 KOG1158 NADP/FAD dependent oxi 99.8 3.1E-18 6.7E-23 164.1 12.7 169 103-281 420-614 (645)
84 PRK06567 putative bifunctional 99.7 9.6E-17 2.1E-21 159.8 19.7 127 58-203 792-923 (1028)
85 COG2375 ViuB Siderophore-inter 99.7 2.3E-14 5E-19 123.7 20.6 214 54-291 15-253 (265)
86 KOG1159 NADP-dependent flavopr 99.6 5.9E-15 1.3E-19 134.6 11.7 162 104-281 367-544 (574)
87 PF08030 NAD_binding_6: Ferric 99.5 9.1E-14 2E-18 112.8 9.2 112 168-279 1-155 (156)
88 PF08022 FAD_binding_8: FAD-bi 99.1 5.2E-12 1.1E-16 95.7 -1.1 89 58-155 3-103 (105)
89 PF08021 FAD_binding_9: Sidero 98.9 7.2E-09 1.6E-13 79.9 7.9 91 60-155 1-116 (117)
90 PF04954 SIP: Siderophore-inte 98.2 9.9E-06 2.2E-10 62.7 9.4 110 169-291 2-112 (119)
91 PLN02631 ferric-chelate reduct 85.3 1.3 2.9E-05 44.4 4.9 45 242-291 648-692 (699)
92 PLN02844 oxidoreductase/ferric 85.0 1.3 2.8E-05 44.6 4.7 42 243-284 658-699 (722)
93 PLN02292 ferric-chelate reduct 84.1 1.6 3.4E-05 43.9 4.8 45 241-291 651-695 (702)
94 PF01272 GreA_GreB: Transcript 75.4 9.7 0.00021 26.6 5.3 63 88-155 5-67 (77)
95 PF00677 Lum_binding: Lumazine 75.1 9.5 0.00021 27.3 5.3 77 58-150 7-83 (85)
96 PRK05753 nucleoside diphosphat 73.0 11 0.00023 29.7 5.6 61 90-155 56-116 (137)
97 PRK01885 greB transcription el 71.5 15 0.00032 29.7 6.2 61 89-155 86-146 (157)
98 PRK09783 copper/silver efflux 70.4 44 0.00095 31.4 10.0 40 58-101 279-321 (409)
99 PF00667 FAD_binding_1: FAD bi 67.9 14 0.0003 31.4 5.6 45 54-102 6-55 (219)
100 PF00667 FAD_binding_1: FAD bi 64.0 8.5 0.00018 32.8 3.6 26 103-130 177-202 (219)
101 PRK00226 greA transcription el 63.5 16 0.00035 29.3 4.9 63 88-155 85-147 (157)
102 COG0782 Uncharacterized conser 61.2 26 0.00057 28.1 5.7 63 88-155 78-140 (151)
103 TIGR01462 greA transcription e 60.7 22 0.00049 28.4 5.3 63 88-155 80-142 (151)
104 TIGR00999 8a0102 Membrane Fusi 59.0 88 0.0019 26.9 9.2 42 57-102 155-199 (265)
105 TIGR01461 greB transcription e 54.1 49 0.0011 26.7 6.2 62 88-155 83-144 (156)
106 PRK05892 nucleoside diphosphat 51.5 43 0.00093 27.1 5.5 65 88-155 82-146 (158)
107 PTZ00450 macrophage migration 50.1 14 0.00031 28.1 2.3 25 269-293 75-100 (113)
108 PF02662 FlpD: Methyl-viologen 49.2 28 0.00061 26.9 3.9 24 269-292 76-99 (124)
109 PRK09578 periplasmic multidrug 49.2 1.1E+02 0.0025 28.2 8.7 40 58-101 256-298 (385)
110 cd06343 PBP1_ABC_ligand_bindin 48.8 2E+02 0.0044 25.8 11.0 110 171-289 119-229 (362)
111 PF13458 Peripla_BP_6: Peripla 45.9 1.8E+02 0.004 25.6 9.4 109 172-289 111-220 (343)
112 COG1465 Predicted alternative 44.9 26 0.00056 31.3 3.4 94 55-155 198-295 (376)
113 cd04482 RPA2_OBF_like RPA2_OBF 44.8 55 0.0012 23.6 4.7 35 120-154 27-61 (91)
114 PRK11556 multidrug efflux syst 44.7 1.5E+02 0.0033 27.8 8.9 41 57-101 272-315 (415)
115 PRK12446 undecaprenyldiphospho 43.0 42 0.00092 30.7 4.8 24 169-192 2-27 (352)
116 PRK09859 multidrug efflux syst 42.8 1.5E+02 0.0034 27.3 8.6 40 58-101 253-295 (385)
117 PRK15030 multidrug efflux syst 42.1 1.8E+02 0.0039 27.1 8.9 41 58-102 257-300 (397)
118 PRK13020 riboflavin synthase s 41.2 1.2E+02 0.0025 25.8 6.8 82 58-155 106-188 (206)
119 TIGR01730 RND_mfp RND family e 40.8 2.5E+02 0.0055 24.7 9.8 43 56-102 202-247 (322)
120 PF02698 DUF218: DUF218 domain 40.5 30 0.00065 27.3 3.0 33 260-292 38-76 (155)
121 PRK09289 riboflavin synthase s 37.6 1.5E+02 0.0031 24.9 6.8 78 58-151 105-182 (194)
122 cd06386 PBP1_NPR_C_like Ligand 36.2 3.5E+02 0.0075 24.9 11.2 83 195-286 136-221 (387)
123 TIGR03702 lip_kinase_YegS lipi 33.1 2.7E+02 0.0058 24.6 8.2 60 213-282 16-75 (293)
124 PTZ00397 macrophage migration 33.0 37 0.00079 25.6 2.3 25 269-293 75-100 (116)
125 PRK09212 pyruvate dehydrogenas 31.9 2E+02 0.0043 26.1 7.2 116 167-290 200-316 (327)
126 PRK06214 sulfite reductase; Pr 31.0 1.5E+02 0.0032 29.1 6.5 43 56-102 168-215 (530)
127 PRK13020 riboflavin synthase s 30.7 2E+02 0.0044 24.3 6.6 81 58-154 9-89 (206)
128 COG0421 SpeE Spermidine syntha 30.4 1.3E+02 0.0028 26.9 5.6 28 168-200 77-104 (282)
129 PF01187 MIF: Macrophage migra 30.3 36 0.00078 25.6 1.8 25 269-293 73-98 (114)
130 PF13344 Hydrolase_6: Haloacid 29.9 1.4E+02 0.0031 21.7 5.0 84 176-276 12-96 (101)
131 cd06389 PBP1_iGluR_AMPA_GluR2 29.7 4.4E+02 0.0095 24.1 10.1 101 180-290 106-207 (370)
132 PRK10834 vancomycin high tempe 29.5 54 0.0012 28.5 3.0 35 259-293 81-120 (239)
133 cd06341 PBP1_ABC_ligand_bindin 29.1 4E+02 0.0087 23.6 8.8 30 260-289 189-218 (341)
134 cd06379 PBP1_iGluR_NMDA_NR1 N- 28.9 4.4E+02 0.0096 23.9 10.6 94 181-287 143-241 (377)
135 cd01391 Periplasmic_Binding_Pr 28.1 3.3E+02 0.0072 22.2 9.4 99 182-289 111-211 (269)
136 cd06371 PBP1_sensory_GC_DEF_li 28.1 4.7E+02 0.01 23.9 9.7 82 197-287 133-221 (382)
137 COG0299 PurN Folate-dependent 28.0 3.7E+02 0.008 22.7 8.0 55 170-230 2-56 (200)
138 PF08869 XisI: XisI protein; 28.0 48 0.001 25.1 2.1 21 273-293 77-97 (111)
139 cd06336 PBP1_ABC_ligand_bindin 27.8 4.4E+02 0.0096 23.5 13.2 110 169-288 112-223 (347)
140 PF13460 NAD_binding_10: NADH( 27.8 1.5E+02 0.0032 23.6 5.3 87 172-285 1-91 (183)
141 PHA02099 hypothetical protein 27.7 1.1E+02 0.0023 21.0 3.4 51 122-178 2-53 (84)
142 cd06367 PBP1_iGluR_NMDA N-term 27.6 4.5E+02 0.0098 23.6 10.0 85 196-288 136-223 (362)
143 PF01094 ANF_receptor: Recepto 27.6 4E+02 0.0087 23.3 8.6 31 258-288 178-208 (348)
144 cd06259 YdcF-like YdcF-like. Y 27.2 1.2E+02 0.0026 23.6 4.4 34 259-292 34-73 (150)
145 KOG0025 Zn2+-binding dehydroge 27.1 56 0.0012 29.4 2.6 30 87-116 97-126 (354)
146 COG0276 HemH Protoheme ferro-l 26.4 3.4E+02 0.0073 24.7 7.5 121 167-292 58-190 (320)
147 cd06350 PBP1_GPCR_family_C_lik 26.3 4.6E+02 0.0099 23.2 9.4 84 195-285 159-243 (348)
148 PF13289 SIR2_2: SIR2-like dom 26.3 2.7E+02 0.006 21.0 6.4 42 168-209 86-127 (143)
149 PRK13054 lipid kinase; Reviewe 25.5 4.5E+02 0.0097 23.3 8.3 76 197-282 4-79 (300)
150 PRK11914 diacylglycerol kinase 25.4 3.5E+02 0.0076 24.0 7.6 78 196-283 8-88 (306)
151 cd06335 PBP1_ABC_ligand_bindin 24.8 5E+02 0.011 23.2 9.6 93 185-286 127-220 (347)
152 TIGR01931 cysJ sulfite reducta 24.5 2.2E+02 0.0048 28.3 6.6 43 56-102 234-281 (597)
153 PF08877 MepB: MepB protein; 24.4 2.7E+02 0.0058 21.6 5.6 50 67-129 14-64 (123)
154 COG1326 Uncharacterized archae 24.4 1.4E+02 0.0031 25.0 4.3 57 91-152 25-86 (201)
155 PLN02741 riboflavin synthase 24.3 3.4E+02 0.0074 22.7 6.8 79 59-153 10-88 (194)
156 KOG1611 Predicted short chain- 23.5 4.5E+02 0.0097 22.9 7.3 56 172-233 6-64 (249)
157 COG1908 FrhD Coenzyme F420-red 23.5 91 0.002 24.0 2.8 31 263-293 68-101 (132)
158 TIGR01316 gltA glutamate synth 23.3 2.6E+02 0.0056 26.5 6.6 57 167-229 271-328 (449)
159 PRK05089 cytochrome C oxidase 23.2 4.4E+02 0.0096 22.0 8.8 90 66-164 59-159 (188)
160 cd06199 SiR Cytochrome p450- l 23.1 1.6E+02 0.0035 27.1 5.1 30 69-102 15-44 (360)
161 PF01933 UPF0052: Uncharacteri 23.1 85 0.0018 28.3 3.1 34 171-208 1-34 (300)
162 TIGR01470 cysG_Nterm siroheme 23.0 4.5E+02 0.0098 22.0 9.5 88 167-286 8-97 (205)
163 PTZ00128 cytochrome c oxidase 22.8 4.8E+02 0.01 22.6 7.4 90 66-164 103-203 (232)
164 PF01408 GFO_IDH_MocA: Oxidore 22.7 3.1E+02 0.0067 20.0 7.3 26 259-284 62-87 (120)
165 PRK09289 riboflavin synthase s 22.7 4.5E+02 0.0099 21.9 7.7 80 58-154 9-88 (194)
166 COG2179 Predicted hydrolase of 22.7 2.5E+02 0.0054 23.1 5.3 64 213-290 51-114 (175)
167 cd06388 PBP1_iGluR_AMPA_GluR4 22.5 6.1E+02 0.013 23.2 10.2 93 181-287 113-206 (371)
168 PRK00228 hypothetical protein; 22.3 3.2E+02 0.0069 22.7 6.2 103 110-218 33-147 (191)
169 cd06204 CYPOR NADPH cytochrome 21.7 2.8E+02 0.0061 26.1 6.5 41 58-102 7-51 (416)
170 cd06355 PBP1_FmdD_like Peripla 21.5 5.9E+02 0.013 22.8 8.6 93 186-287 123-216 (348)
171 PRK06342 transcription elongat 21.2 2.1E+02 0.0045 23.1 4.8 56 88-149 94-149 (160)
172 PRK10953 cysJ sulfite reductas 21.2 2.7E+02 0.0059 27.7 6.5 44 55-102 236-284 (600)
173 KOG1159 NADP-dependent flavopr 21.1 1.4E+02 0.0029 29.0 4.0 49 49-101 189-242 (574)
174 PRK14096 pgi glucose-6-phospha 20.6 3.5E+02 0.0077 26.5 6.9 65 167-235 113-179 (528)
175 PF00551 Formyl_trans_N: Formy 20.6 1.9E+02 0.0041 23.6 4.6 38 170-208 2-39 (181)
176 TIGR00187 ribE riboflavin synt 20.5 4.4E+02 0.0096 22.1 6.7 81 58-154 9-89 (200)
177 KOG0029 Amine oxidase [Seconda 20.4 1.1E+02 0.0023 29.8 3.4 26 167-192 14-40 (501)
178 KOG0072 GTP-binding ADP-ribosy 20.1 1.2E+02 0.0025 24.5 2.9 62 121-184 17-79 (182)
179 PF04225 OapA: Opacity-associa 20.0 2.1E+02 0.0045 20.4 4.0 24 87-110 41-64 (85)
No 1
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=3.2e-40 Score=301.09 Aligned_cols=227 Identities=19% Similarity=0.377 Sum_probs=196.0
Q ss_pred CCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710 53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA- 131 (293)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~- 131 (293)
+..+..++|++++.++++++.++|+.++.. ....|+||||++|++++...+|+|||++.|.. ++.++|+||.++
T Consensus 103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~---~~~l~~~ik~~~~ 177 (340)
T PRK11872 103 DTLKISGVVTAVELVSETTAILHLDASAHG--RQLDFLPGQYARLQIPGTDDWRSYSFANRPNA---TNQLQFLIRLLPD 177 (340)
T ss_pred ccceeeEEEEEEEecCCCeEEEEEEcCCCC--CccCcCCCCEEEEEeCCCCceeecccCCCCCC---CCeEEEEEEECCC
Confidence 445678999999999999999999875321 23578999999999987666899999999865 789999999975
Q ss_pred CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710 132 GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (293)
Q Consensus 132 G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~ 210 (293)
|.+|+||+ ++++||+|.++||+|+ |.++. ..++++|||||+||||++++++++...+...+++|+|++|+.++
T Consensus 178 G~~s~~L~~~l~~G~~v~i~gP~G~-f~l~~-----~~~~~vliagGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d 251 (340)
T PRK11872 178 GVMSNYLRERCQVGDEILFEAPLGA-FYLRE-----VERPLVFVAGGTGLSAFLGMLDELAEQGCSPPVHLYYGVRHAAD 251 (340)
T ss_pred CcchhhHhhCCCCCCEEEEEcCcce-eEeCC-----CCCcEEEEeCCcCccHHHHHHHHHHHcCCCCcEEEEEecCChHH
Confidence 57899997 5999999999999998 55542 45799999999999999999999987665678999999999999
Q ss_pred cccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccC
Q 022710 211 MAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEK 288 (293)
Q Consensus 211 ~~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~ 288 (293)
++|.++|++|+. .+++++.+++++++.|.+..|++++.+.+.. ....+..+|+|||+.|++.+.+.|++.|+++++
T Consensus 252 l~~~~el~~~~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~--l~~~~~~vy~CGp~~mv~~~~~~L~~~Gv~~~~ 329 (340)
T PRK11872 252 LCELQRLAAYAERLPNFRYHPVVSKASADWQGKRGYIHEHFDKAQ--LRDQAFDMYLCGPPPMVEAVKQWLDEQALENYR 329 (340)
T ss_pred hccHHHHHHHHHHCCCcEEEEEEeCCCCcCCCceeeccHHHHHhh--cCcCCCEEEEeCCHHHHHHHHHHHHHcCCCHHH
Confidence 999999999976 4899999999888889899999998876532 223456799999999999999999999999999
Q ss_pred eecc
Q 022710 289 ILKN 292 (293)
Q Consensus 289 I~~~ 292 (293)
||++
T Consensus 330 i~~E 333 (340)
T PRK11872 330 LYYE 333 (340)
T ss_pred EEEe
Confidence 9986
No 2
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=1.3e-39 Score=280.87 Aligned_cols=218 Identities=26% Similarity=0.507 Sum_probs=188.9
Q ss_pred eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHh
Q 022710 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEV 137 (293)
Q Consensus 59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~ 137 (293)
++|++++.+++++++++|+.++ ...|+||||++|.+++. ..|+|||++.+.. ++.++|+||.++ |.+|++
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~-----~~~~~pGQ~v~l~~~~~-~~r~ySi~s~~~~---~~~l~~~vk~~~~G~~s~~ 71 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPA-----PLDFLAGQYLDLLLDDG-DKRPFSIASAPHE---DGEIELHIRAVPGGSFSDY 71 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCC-----CcccCCCCEEEEEcCCC-CceeeecccCCCC---CCeEEEEEEecCCCccHHH
Confidence 5799999999999999998653 25789999999999863 5799999999865 789999999986 678988
Q ss_pred hhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 022710 138 LCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK 216 (293)
Q Consensus 138 L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~ 216 (293)
|++ +++||+|.++||+|. |.+.. +..++++|||||+||||++++++++...+...++.|+|++|+.++++|+++
T Consensus 72 l~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~~~ 146 (224)
T cd06189 72 VFEELKENGLVRIEGPLGD-FFLRE----DSDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDEL 146 (224)
T ss_pred HHHhccCCCEEEEecCCcc-EEecc----CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhccCHHH
Confidence 875 999999999999998 54432 247789999999999999999999987666678999999999999999999
Q ss_pred HHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 217 FKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 217 l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
|++|.++ +++++.+++++++.|.+..|++++.+.+. ..+..+..+|+|||+.|++++.+.|++.|+++++||++
T Consensus 147 l~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~--~~~~~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e 222 (224)
T cd06189 147 LEAWAEAHPNFTYVPVLSEPEEGWQGRTGLVHEAVLED--FPDLSDFDVYACGSPEMVYAARDDFVEKGLPEENFFSD 222 (224)
T ss_pred HHHHHHhCCCeEEEEEeCCCCcCCccccccHHHHHHhh--ccCccccEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence 9999874 78888888988777888889998877663 22345678999999999999999999999999999987
No 3
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=1.4e-39 Score=283.07 Aligned_cols=226 Identities=27% Similarity=0.434 Sum_probs=191.0
Q ss_pred ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GST 134 (293)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~ 134 (293)
...++|.+++.++++++.++|+.+++. ...|+||||+.|++++....|+|||++.+.+ ++.++|+||.++ |.+
T Consensus 6 ~~~~~v~~~~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~l~l~i~~~~~G~~ 79 (238)
T cd06211 6 DFEGTVVEIEDLTPTIKGVRLKLDEPE---EIEFQAGQYVNLQAPGYEGTRAFSIASSPSD---AGEIELHIRLVPGGIA 79 (238)
T ss_pred EEeEEEEEEEecCCCEEEEEEEcCCCC---cCccCCCCeEEEEcCCCCCccccccCCCCCC---CCEEEEEEEECCCCcc
Confidence 457999999999999999999976532 2478999999999987656799999999865 789999999874 689
Q ss_pred hHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 022710 135 AEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY 213 (293)
Q Consensus 135 s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~ 213 (293)
|++|+ ++++||+|.++||+|+ |.+.. +..+++||||||+||||++++++++...+...++.|+|++|+.++++|
T Consensus 80 s~~l~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~ 154 (238)
T cd06211 80 TTYVHKQLKEGDELEISGPYGD-FFVRD----SDQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYY 154 (238)
T ss_pred hhhHhhcCCCCCEEEEECCccc-eEecC----CCCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEecCChhhhcc
Confidence 99997 6999999999999998 43432 245799999999999999999999986665578999999999999999
Q ss_pred HHHHHHHHhC--CcEEEEEEecC--CCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCe
Q 022710 214 QDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289 (293)
Q Consensus 214 ~~~l~~l~~~--~i~~~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I 289 (293)
.++|++|+.. +++++++++++ ++.|.+..|++++.+.+.. ..+..+..+|+|||+.|++.+.+.|.+.|+++++|
T Consensus 155 ~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~~-~~~~~~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i 233 (238)
T cd06211 155 LDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHDAAKKHF-KNDFRGHKAYLCGPPPMIDACIKTLMQGRLFERDI 233 (238)
T ss_pred HHHHHHHHHhCCCeEEEEEECCCCCCcCcccccCcHHHHHHHhc-ccccccCEEEEECCHHHHHHHHHHHHHcCCCHHHc
Confidence 9999999864 78888888875 3467778899988765521 11335678999999999999999999999999999
Q ss_pred eccC
Q 022710 290 LKNF 293 (293)
Q Consensus 290 ~~~~ 293 (293)
|++.
T Consensus 234 ~~e~ 237 (238)
T cd06211 234 YYEK 237 (238)
T ss_pred cccC
Confidence 9873
No 4
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=1e-39 Score=291.45 Aligned_cols=229 Identities=25% Similarity=0.442 Sum_probs=187.0
Q ss_pred CCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCC
Q 022710 53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG 132 (293)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G 132 (293)
+..|..++|++++++++++..++|++..+.......|+||||++|++++.+. ++|||++.|.. ++.++|+||.. |
T Consensus 2 ~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~-~pySias~p~~---~~~l~l~Ik~~-G 76 (289)
T PRK08345 2 PYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGE-VPISICSSPTR---KGFFELCIRRA-G 76 (289)
T ss_pred CcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCCc-eeeEecCCCCC---CCEEEEEEEeC-C
Confidence 5568899999999999998888887654321123468999999999986443 68999999865 78999999987 9
Q ss_pred cchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEccCCcccc
Q 022710 133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRM 211 (293)
Q Consensus 133 ~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~ 211 (293)
.+|++|+++++||+|.++||+|.+|.++. ...++++||||||||||++++++++++.. ...+++|+|++|+.+++
T Consensus 77 ~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~----~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d~ 152 (289)
T PRK08345 77 RVTTVIHRLKEGDIVGVRGPYGNGFPVDE----MEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDL 152 (289)
T ss_pred hHHHHHHhCCCCCEEEEeCCCCCCCCccc----ccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCHHHh
Confidence 99999999999999999999998775542 23568999999999999999999987654 45799999999999999
Q ss_pred ccHHHHHHHHh--CCcEEEEEEecCCCCCCc------------cccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHH
Q 022710 212 AYQDKFKEWES--SGVKIVPVLSQPDGNWSG------------ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTS 277 (293)
Q Consensus 212 ~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~------------~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~ 277 (293)
+|+++|++|+. .+++++.++++++ .|.+ ..|++.+.+.+. ..+..+..+|+|||++|++.+.+
T Consensus 153 ~~~deL~~l~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~~~~~~--~~~~~~~~vyiCGP~~m~~~v~~ 229 (289)
T PRK08345 153 LFYDELIKDLAEAENVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTDLFREA--NTDPKNTYAAICGPPVMYKFVFK 229 (289)
T ss_pred hHHHHHHHHHhcCCCEEEEEEecCCC-CCcCccccccccccccccCchhhhhhhc--CCCccccEEEEECCHHHHHHHHH
Confidence 99999999965 3788888888743 2321 246666665542 23345678999999999999999
Q ss_pred HHHHcCCCccCeeccC
Q 022710 278 IVLAEGVSSEKILKNF 293 (293)
Q Consensus 278 ~L~~~Gv~~~~I~~~~ 293 (293)
.|++.|+++++||+++
T Consensus 230 ~L~~~Gv~~~~i~~~l 245 (289)
T PRK08345 230 ELINRGYRPERIYVTL 245 (289)
T ss_pred HHHHcCCCHHHEEEEe
Confidence 9999999999999863
No 5
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=1.9e-39 Score=280.45 Aligned_cols=219 Identities=21% Similarity=0.428 Sum_probs=188.7
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~ 136 (293)
.++|++++.+++++++++|+.++. ....|+||||++|++++....|+|||++.|. ++.++|+||.++ |.+|+
T Consensus 3 ~~~V~~~~~~t~~~~~l~l~~~~~---~~~~~~pGQ~v~l~~~~~~~~r~ysi~s~~~----~~~i~~~i~~~~~G~~s~ 75 (228)
T cd06209 3 EATVTEVERLSDSTIGLTLELDEA---GALAFLPGQYVNLQVPGTDETRSYSFSSAPG----DPRLEFLIRLLPGGAMSS 75 (228)
T ss_pred eEEEEEEEEcCCCeEEEEEEcCCC---CcCccCCCCEEEEEeCCCCcccccccccCCC----CCeEEEEEEEcCCCcchh
Confidence 689999999999999999997653 2357899999999998766789999999886 589999999864 78999
Q ss_pred hhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 022710 137 VLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215 (293)
Q Consensus 137 ~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 215 (293)
||++ +++||+|.++||+|. |.+.. ..++++|||||+||||++++++++.......+++|+|++|+.++++|.+
T Consensus 76 ~l~~~l~~G~~v~v~gP~G~-~~~~~-----~~~~~vlia~GtGIaP~~~ll~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 149 (228)
T cd06209 76 YLRDRAQPGDRLTLTGPLGS-FYLRE-----VKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADLVELD 149 (228)
T ss_pred hHHhccCCCCEEEEECCccc-ceecC-----CCCeEEEEEcccCHhHHHHHHHHHHhcCCCCcEEEEEecCCHHHhccHH
Confidence 9997 999999999999998 43432 3478999999999999999999998666667899999999999999999
Q ss_pred HHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 216 KFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 216 ~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
+|++|... ++++++++++++. |.+..|++++.+.+. .....+..+|+|||+.|++.+++.|++.|+++++|+++
T Consensus 150 ~l~~l~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~~~~~--~~~~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~E 225 (228)
T cd06209 150 RLEALAERLPGFSFRTVVADPDS-WHPRKGYVTDHLEAE--DLNDGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYYE 225 (228)
T ss_pred HHHHHHHhCCCeEEEEEEcCCCc-cCCCcCCccHHHHHh--hccCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEeee
Confidence 99999864 7888888887654 667788998877653 22334678999999999999999999999999999987
No 6
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=2.3e-39 Score=281.34 Aligned_cols=226 Identities=19% Similarity=0.402 Sum_probs=192.1
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccc-cccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDI-ASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~-~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s 135 (293)
.++|++++.++++++.++|+.++..++ ....|+||||++|++++...+|+|||++.|.. ++.++|+||..+ |.+|
T Consensus 3 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~---~~~l~~~i~~~~~G~~s 79 (236)
T cd06210 3 EAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTDTRRSYSLANTPNW---DGRLEFLIRLLPGGAFS 79 (236)
T ss_pred eEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCccceecccCCCCCC---CCEEEEEEEEcCCCccc
Confidence 688999999999999999997543100 12578999999999997777899999999875 789999999875 6799
Q ss_pred Hhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710 136 EVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (293)
Q Consensus 136 ~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (293)
+||++ +++||+|.++||+|+ |.++. +..++++|||||+||||++++++++...+...+++|+|++|+.++++|.
T Consensus 80 ~~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~ 154 (236)
T cd06210 80 TYLETRAKVGQRLNLRGPLGA-FGLRE----NGLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAELFYL 154 (236)
T ss_pred hhhhhCcCCCCEEEEecCcce-eeecC----CCCccEEEEccCcchhHHHHHHHHHHhcCCCceEEEEEecCCHHHhhhH
Confidence 99997 999999999999998 76652 2467899999999999999999998766556789999999999999999
Q ss_pred HHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 215 ~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
++|++|... +++++++++++++.|.+..|++.+.+.+.. ........+|+|||+.|++.+++.|++.|+++++|+.+
T Consensus 155 ~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l-~~~~~~~~vyicGp~~m~~~~~~~l~~~G~~~~~i~~E 233 (236)
T cd06210 155 DELKRLADSLPNLTVRICVWRPGGEWEGYRGTVVDALREDL-ASSDAKPDIYLCGPPGMVDAAFAAAREAGVPDEQVYLE 233 (236)
T ss_pred HHHHHHHHhCCCeEEEEEEcCCCCCcCCccCcHHHHHHHhh-cccCCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHeeec
Confidence 999999864 789999988877778788889888766531 11223567999999999999999999999999999986
No 7
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=3.7e-39 Score=279.32 Aligned_cols=222 Identities=23% Similarity=0.452 Sum_probs=189.3
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~ 136 (293)
+++|.+++.+++++++++|+.+.+. ...|+||||+.|++++.+..|+|||++.|.+ .+.++|+||.++ |.+|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~l~l~vk~~~~G~~s~ 75 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPE---PIKFFAGQYVDITVPGTEETRSFSMANTPAD---PGRLEFIIKKYPGGLFSS 75 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCC---cCCcCCCCeEEEEcCCCCcccccccCCCCCC---CCEEEEEEEECCCCchhh
Confidence 5789999999999999999976542 3578999999999987777899999999874 689999999975 57899
Q ss_pred hhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 022710 137 VLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215 (293)
Q Consensus 137 ~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 215 (293)
||++ +++||+|.+.||+|+ |.+.. +..++++|||||+||||++++++++...+...++.|+|++|+.++++|.+
T Consensus 76 ~l~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 150 (232)
T cd06212 76 FLDDGLAVGDPVTVTGPYGT-CTLRE----SRDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLE 150 (232)
T ss_pred HHhhcCCCCCEEEEEcCccc-ceecC----CCCCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEEEeccchHHhccHH
Confidence 9986 999999999999998 44432 24679999999999999999999998766667899999999999999999
Q ss_pred HHHHHHhC--CcEEEEEEecCC--CCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710 216 KFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 216 ~l~~l~~~--~i~~~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
+|++|... +++++++++++. +.|.+..|++++.+.+. ..+..+..+|+|||++|++.+.+.|++.|+++++||+
T Consensus 151 ~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~~ 228 (232)
T cd06212 151 EIAALGEKIPDFTFIPALSESPDDEGWSGETGLVTEVVQRN--EATLAGCDVYLCGPPPMIDAALPVLEMSGVPPDQIFY 228 (232)
T ss_pred HHHHHHHhCCCEEEEEEECCCCCCCCCcCCcccHHHHHHhh--ccCccCCEEEEECCHHHHHHHHHHHHHcCCCHHHeee
Confidence 99999764 677887888753 45667788988866552 2333467899999999999999999999999999998
Q ss_pred c
Q 022710 292 N 292 (293)
Q Consensus 292 ~ 292 (293)
+
T Consensus 229 e 229 (232)
T cd06212 229 D 229 (232)
T ss_pred c
Confidence 7
No 8
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=5e-39 Score=278.60 Aligned_cols=221 Identities=20% Similarity=0.347 Sum_probs=188.1
Q ss_pred ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCC-cc
Q 022710 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAG-ST 134 (293)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G-~~ 134 (293)
+.+++|.+++.++++++.++|+.++ ...|+||||++|+++.. ..|+|||++.|.. ++.++|.||..++ ..
T Consensus 2 ~~~~~v~~i~~~~~~~~~l~l~~~~-----~~~~~pGQ~v~l~~~~~-~~r~ySias~p~~---~~~l~~~v~~~~~~~~ 72 (232)
T PRK08051 2 TLSCKVTSVEAITDTVYRVRLVPEA-----PFSFRAGQYLMVVMGEK-DKRPFSIASTPRE---KGFIELHIGASELNLY 72 (232)
T ss_pred eeEEEEEEEecCCCCeEEEEEecCC-----CCccCCCCEEEEEcCCC-cceeecccCCCCC---CCcEEEEEEEcCCCcc
Confidence 5689999999999999999997543 24789999999999753 5689999999864 7889999999763 44
Q ss_pred hHhh-hcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 022710 135 AEVL-CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY 213 (293)
Q Consensus 135 s~~L-~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~ 213 (293)
+.++ .++++||+|.+.||+|+++ +.. +..+++||||||+||||++++++++...+...++.++|++|+.++++|
T Consensus 73 ~~~~~~~l~~G~~v~v~gP~G~~~-~~~----~~~~~~vliagG~GiaP~~~~l~~~~~~~~~~~v~l~~g~r~~~~~~~ 147 (232)
T PRK08051 73 AMAVMERILKDGEIEVDIPHGDAW-LRE----ESERPLLLIAGGTGFSYARSILLTALAQGPNRPITLYWGGREEDHLYD 147 (232)
T ss_pred hHHHHHHcCCCCEEEEEcCCCceE-ccC----CCCCcEEEEecCcCcchHHHHHHHHHHhCCCCcEEEEEEeccHHHhhh
Confidence 5555 5799999999999999844 331 246789999999999999999999987666789999999999999999
Q ss_pred HHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHH-HHcCCCccCee
Q 022710 214 QDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIV-LAEGVSSEKIL 290 (293)
Q Consensus 214 ~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L-~~~Gv~~~~I~ 290 (293)
.++|++|+.+ +++++.+++++++.|.+..|++.+.+.+. ..+..+..+|+|||++|++.+.+.| ++.|+++++|+
T Consensus 148 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~vyicGp~~m~~~v~~~l~~~~G~~~~~i~ 225 (232)
T PRK08051 148 LDELEALALKHPNLHFVPVVEQPEEGWQGKTGTVLTAVMQD--FGSLAEYDIYIAGRFEMAKIARELFCRERGAREEHLF 225 (232)
T ss_pred hHHHHHHHHHCCCcEEEEEeCCCCCCcccceeeehHHHHhh--ccCcccCEEEEECCHHHHHHHHHHHHHHcCCCHHHee
Confidence 9999999874 78999998888888888889998877652 2233456899999999999999999 99999999999
Q ss_pred cc
Q 022710 291 KN 292 (293)
Q Consensus 291 ~~ 292 (293)
++
T Consensus 226 ~e 227 (232)
T PRK08051 226 GD 227 (232)
T ss_pred cc
Confidence 76
No 9
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=2.9e-39 Score=288.04 Aligned_cols=226 Identities=25% Similarity=0.431 Sum_probs=188.7
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-----------------------------C--
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----------------------------G-- 103 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-----------------------------~-- 103 (293)
.+..++|++++.++++++.++|+.+++. ...|+||||++|++++. +
T Consensus 8 ~~~~~~v~~~~~~~~d~~~l~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (283)
T cd06188 8 KKWECTVISNDNVATFIKELVLKLPSGE---EIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEP 84 (283)
T ss_pred ceEEEEEEEcccccchhhheEEecCCCc---eeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCc
Confidence 4557999999999999999999976532 24689999999999753 1
Q ss_pred ceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEE
Q 022710 104 KPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLI 173 (293)
Q Consensus 104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivl 173 (293)
..|+|||++.|.. ++.++|+||.. .|.+|+||+++++||+|.+.||+|. |.+. +..+++||
T Consensus 85 ~~R~ySias~p~~---~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~-f~l~-----~~~~~~vl 155 (283)
T cd06188 85 VSRAYSLANYPAE---EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGE-FFIK-----DTDREMVF 155 (283)
T ss_pred cccccCcCCCCCC---CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECcccc-cccc-----CCCCcEEE
Confidence 2489999999975 78999999962 3789999999999999999999998 5444 25679999
Q ss_pred EEeCcchhHHHHHHHHhhccCC-CCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecCC--CCCCccccccchH
Q 022710 174 FATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAA 248 (293)
Q Consensus 174 ia~GtGIaP~~sll~~~~~~~~-~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~~--~~~~~~~g~v~~~ 248 (293)
|||||||||+++|+++++..+. ..+++|+|++|+.++++|.++|++|... +++++++++++. +.|.+..|++++.
T Consensus 156 IAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~~~ 235 (283)
T cd06188 156 IGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIHQV 235 (283)
T ss_pred EEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeecHH
Confidence 9999999999999999865443 4789999999999999999999999864 788888888754 5677788999987
Q ss_pred HHhhhcc--CCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 249 FSRAKKI--FNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 249 ~~~~~~~--~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
+.+.... .+..+..+|+|||+.|++.+.+.|++.|+++++||++
T Consensus 236 ~~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e 281 (283)
T cd06188 236 LLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFD 281 (283)
T ss_pred HHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence 7664211 1234678999999999999999999999999999987
No 10
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=7.5e-39 Score=292.38 Aligned_cols=224 Identities=25% Similarity=0.487 Sum_probs=191.8
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Cc
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GS 133 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~ 133 (293)
.+.+++|++++.++++++.++|+.++. ....|+||||++|++++ +..|+|||++.|.. .+.++|+||.++ |.
T Consensus 101 ~~~~~~V~~~~~~~~d~~~l~l~~~~~---~~~~~~pGQfv~l~~~~-~~~R~ySias~p~~---~~~l~~~ik~~~~G~ 173 (339)
T PRK07609 101 KKLPCRVASLERVAGDVMRLKLRLPAT---ERLQYLAGQYIEFILKD-GKRRSYSIANAPHS---GGPLELHIRHMPGGV 173 (339)
T ss_pred eEEEEEEEEEEcCCCcEEEEEEEcCCC---CCCccCCCCeEEEECCC-CceeeeecCCCCCC---CCEEEEEEEecCCCc
Confidence 466899999999999999999997542 23578999999999985 45799999999874 689999999875 68
Q ss_pred chHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 022710 134 TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA 212 (293)
Q Consensus 134 ~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~ 212 (293)
+|+||+ ++++||+|.++||+|. |.+.. +..+++|||||||||||++++++++...+...+++|+|++|+.++++
T Consensus 174 ~s~~l~~~l~~G~~v~v~gP~G~-~~~~~----~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~~~i~l~~g~r~~~dl~ 248 (339)
T PRK07609 174 FTDHVFGALKERDILRIEGPLGT-FFLRE----DSDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVTLYWGARRPEDLY 248 (339)
T ss_pred cHHHHHHhccCCCEEEEEcCcee-EEecC----CCCCCEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEecCChHHhc
Confidence 899997 6999999999999998 54442 35678999999999999999999998766667899999999999999
Q ss_pred cHHHHHHHHhC--CcEEEEEEec--CCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccC
Q 022710 213 YQDKFKEWESS--GVKIVPVLSQ--PDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEK 288 (293)
Q Consensus 213 ~~~~l~~l~~~--~i~~~~~~s~--~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~ 288 (293)
+.+++++|..+ ++++++++++ +++.|.+..|++++.+.+. ..+..+..+|+|||+.|++.+.+.|.+.|+++++
T Consensus 249 ~~e~l~~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~--~~~~~~~~vy~CGp~~m~~~~~~~l~~~G~~~~~ 326 (339)
T PRK07609 249 LSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLED--FPDLSGHQVYACGSPVMVYAARDDFVAAGLPAEE 326 (339)
T ss_pred cHHHHHHHHHhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhh--cccccCCEEEEECCHHHHHHHHHHHHHcCCCHHH
Confidence 99999999764 7888888887 3566878889999887663 2333467899999999999999999999999999
Q ss_pred eecc
Q 022710 289 ILKN 292 (293)
Q Consensus 289 I~~~ 292 (293)
||++
T Consensus 327 i~~e 330 (339)
T PRK07609 327 FFAD 330 (339)
T ss_pred eEEe
Confidence 9986
No 11
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=1.6e-38 Score=275.77 Aligned_cols=225 Identities=25% Similarity=0.429 Sum_probs=190.7
Q ss_pred ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC-CC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-VG--KPTFLAIASPPSFASASGAFEFLVKSVA- 131 (293)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~-~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~- 131 (293)
|.+++|++++.+++++++++|+.++.. ...|+||||++|+++. .+ ..|+|||++.|.+ .+.++|+||..+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~---~~~l~l~v~~~~~ 74 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGV---PPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ---RGRVELTVKRVPG 74 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCC---cCCcCCcCeEEEEEecCCCceeeeeecccCCCCC---CCeEEEEEEEcCC
Confidence 789999999999999999999976532 2478999999999972 22 3599999999875 679999999875
Q ss_pred CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710 132 GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (293)
Q Consensus 132 G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~ 210 (293)
|.+|.||++ +++||.|.+.||+|. |.+.. ...++++|||||+||||++++++++...+...++.++|++++.++
T Consensus 75 G~~s~~l~~~l~~Gd~v~i~gP~G~-~~~~~----~~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i~l~~~~r~~~~ 149 (235)
T cd06217 75 GEVSPYLHDEVKVGDLLEVRGPIGT-FTWNP----LHGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSARTAED 149 (235)
T ss_pred CcchHHHHhcCCCCCEEEEeCCcee-eEeCC----CCCceEEEEecCcCccHHHHHHHHHHhcCCCceEEEEEecCCHHH
Confidence 678999985 899999999999998 76542 246789999999999999999999987666788999999999999
Q ss_pred cccHHHHHHHHhC--CcEEEEEEecC-CCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 211 MAYQDKFKEWESS--GVKIVPVLSQP-DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 211 ~~~~~~l~~l~~~--~i~~~~~~s~~-~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
++|.++|.++..+ +++++++++++ ++.+.+..|++.+...+.. ..+..+..+|+|||++|++++.+.|++.|++++
T Consensus 150 ~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~v~icGp~~m~~~v~~~l~~~Gv~~~ 228 (235)
T cd06217 150 VIFRDELEQLARRHPNLHVTEALTRAAPADWLGPAGRITADLIAEL-VPPLAGRRVYVCGPPAFVEAATRLLLELGVPRD 228 (235)
T ss_pred hhHHHHHHHHHHHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhh-CCCccCCEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence 9999999999873 68888888876 4566677899987765432 223456899999999999999999999999999
Q ss_pred Ceecc
Q 022710 288 KILKN 292 (293)
Q Consensus 288 ~I~~~ 292 (293)
+|+++
T Consensus 229 ~i~~E 233 (235)
T cd06217 229 RIRTE 233 (235)
T ss_pred HEeec
Confidence 99986
No 12
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.1e-38 Score=276.15 Aligned_cols=232 Identities=21% Similarity=0.315 Sum_probs=203.8
Q ss_pred ccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEE
Q 022710 50 RQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLV 127 (293)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~V 127 (293)
-.++..|.++++++++.++.|+..++|.++.+. .......||||.++++..+ ..|+||+.+.+.+ .|.++|+|
T Consensus 45 ~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~--~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~---~g~~~l~V 119 (286)
T KOG0534|consen 45 LVDPESYYPFRLIDKTELSHDTSLFRFVLPSAD--HVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDD---KGYFDLVV 119 (286)
T ss_pred ccCCcceEEEEEEEEEeccCCceeEEEecCCch--hccCcccceEEEEEecCCCcEEEEecCCccCccc---cceEEEEE
Confidence 345557999999999999999999999987544 3467899999999999654 4799999999985 69999999
Q ss_pred EEeC-CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEcc
Q 022710 128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGA 205 (293)
Q Consensus 128 k~~~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~ 205 (293)
|.+. |.+|+||++|++||+|+++||.|+ |.+++ +.++++.|||||||||||++++++++... +.+++.|+|++
T Consensus 120 K~Y~~G~mS~~l~~LkiGd~ve~rGP~G~-~~~~~----~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N 194 (286)
T KOG0534|consen 120 KVYPKGKMSQHLDSLKIGDTVEFRGPIGE-FKYDP----QKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYAN 194 (286)
T ss_pred EeccCCcccHHHhcCCCCCEEEEecCccc-eEecC----CCcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEec
Confidence 9987 799999999999999999999999 77763 35899999999999999999999999764 47899999999
Q ss_pred CCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhccCCCC-CcEEEEeCChHHHH-HHHHHHH
Q 022710 206 RNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ-GTGVVLCGQKQMAE-EVTSIVL 280 (293)
Q Consensus 206 r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~v~vCGp~~~~~-~~~~~L~ 280 (293)
++.+|++++++|++++.. ++++++++++++..|.+..|++.+.+..+....+.. ++.+++|||++|++ .+...|+
T Consensus 195 ~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGPp~m~~~~~~~~le 274 (286)
T KOG0534|consen 195 KTEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGPPPMINGAAQGNLE 274 (286)
T ss_pred CCccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCCeEEEEECCHHHHhHHHHHHHH
Confidence 999999999999999884 789999999999999999999999887764444444 59999999999998 5888888
Q ss_pred HcCCCccCeec
Q 022710 281 AEGVSSEKILK 291 (293)
Q Consensus 281 ~~Gv~~~~I~~ 291 (293)
+.|+++++|++
T Consensus 275 ~Lg~~~~~vf~ 285 (286)
T KOG0534|consen 275 KLGYNEDQVFV 285 (286)
T ss_pred hcCCChHhEEe
Confidence 89999999875
No 13
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=2.9e-38 Score=276.19 Aligned_cols=226 Identities=23% Similarity=0.363 Sum_probs=190.6
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC----CceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV----GKPTFLAIASPPSFASASGAFEFLVKS 129 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~----~~~r~ySi~s~p~~~~~~~~~~~~Vk~ 129 (293)
..|..++|++++.+++++++++|+.++... ...|+||||+.|+++.. ...|+|||++.|. ++.++|.||.
T Consensus 4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~----~~~l~~~ik~ 77 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGP--LPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPN----GDYYRISVKR 77 (247)
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCc--CCCCCCCCEEEEEEecCCCCCceeEEeEeccCCC----CCeEEEEEEE
Confidence 468999999999999999999999754321 24789999999999643 3579999999986 5699999998
Q ss_pred eC-CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 022710 130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207 (293)
Q Consensus 130 ~~-G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~ 207 (293)
.+ |.+|+||++ +++||+|.|.||+|. |.++. +..++++||||||||||++++++++...+...++.|+|++|+
T Consensus 78 ~~~G~~s~~l~~~~~~Gd~v~i~gP~G~-~~~~~----~~~~~llliagGtGiaP~~~~l~~~~~~~~~~~i~l~~~~r~ 152 (247)
T cd06184 78 EPGGLVSNYLHDNVKVGDVLEVSAPAGD-FVLDE----ASDRPLVLISAGVGITPMLSMLEALAAEGPGRPVTFIHAARN 152 (247)
T ss_pred cCCCcchHHHHhcCCCCCEEEEEcCCCc-eECCC----CCCCcEEEEeccccHhHHHHHHHHHHhcCCCCcEEEEEEcCc
Confidence 75 789999997 999999999999998 76652 256789999999999999999999986656788999999999
Q ss_pred ccccccHHHHHHHHhC--CcEEEEEEecCCCCC----CccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHH
Q 022710 208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLA 281 (293)
Q Consensus 208 ~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~----~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~ 281 (293)
.++++|+++|++|... +++++++++++.+.+ .+..|+++...... .....+..+|+|||++|++++.+.|++
T Consensus 153 ~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~~v~icGp~~m~~~v~~~l~~ 230 (247)
T cd06184 153 SAVHAFRDELEELAARLPNLKLHVFYSEPEAGDREEDYDHAGRIDLALLRE--LLLPADADFYLCGPVPFMQAVREGLKA 230 (247)
T ss_pred hhhHHHHHHHHHHHhhCCCeEEEEEECCCCcccccccccccCccCHHHHhh--ccCCCCCEEEEECCHHHHHHHHHHHHH
Confidence 9999999999999864 889999988765443 45568887654442 223457899999999999999999999
Q ss_pred cCCCccCeecc
Q 022710 282 EGVSSEKILKN 292 (293)
Q Consensus 282 ~Gv~~~~I~~~ 292 (293)
.|+++++|+++
T Consensus 231 ~G~~~~~i~~e 241 (247)
T cd06184 231 LGVPAERIHYE 241 (247)
T ss_pred cCCCHHHeeee
Confidence 99999999986
No 14
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=2.8e-38 Score=272.27 Aligned_cols=217 Identities=27% Similarity=0.477 Sum_probs=186.2
Q ss_pred EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC-ceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHhh
Q 022710 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-KPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVL 138 (293)
Q Consensus 61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~-~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~L 138 (293)
|++++.++++++.++|+.++. ..|+||||+.|++++.. ..|+|||++.|.+ .+.++|+||..+ |.+|+||
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~-----~~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~---~~~~~~~i~~~~~G~~s~~l 72 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQP-----LPFWAGQYVNVTVPGRPRTWRAYSPANPPNE---DGEIEFHVRAVPGGRVSNAL 72 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCC-----CCcCCCceEEEEcCCCCCcceeccccCCCCC---CCEEEEEEEeCCCCcchHHH
Confidence 467899999999999987543 46899999999998654 5799999999874 689999999874 7899999
Q ss_pred hc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710 139 CG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (293)
Q Consensus 139 ~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (293)
++ +++||+|.+.||+|. |.+.. +.+++++|||||+||||++++++++...+...++.++|++++.++++|.++|
T Consensus 73 ~~~l~~G~~v~i~gP~G~-~~~~~----~~~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~~~~~~~~~~l 147 (224)
T cd06187 73 HDELKVGDRVRLSGPYGT-FYLRR----DHDRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGL 147 (224)
T ss_pred hhcCccCCEEEEeCCccc-eEecC----CCCCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCChhhhcChHHH
Confidence 97 999999999999998 54432 2467899999999999999999999866666799999999999999999999
Q ss_pred HHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 218 KEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 218 ~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
++|... +++++++++++++.|.+..|++.+.+.+. ..+..++.+|+|||++|++.+.+.|++.|+++++|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i~~e 222 (224)
T cd06187 148 LALAARHPWLRVVPVVSHEEGAWTGRRGLVTDVVGRD--GPDWADHDIYICGPPAMVDATVDALLARGAPPERIHFD 222 (224)
T ss_pred HHHHHhCCCeEEEEEeCCCCCccCCCcccHHHHHHHh--ccccccCEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence 999864 67888888876666777889999887652 22345688999999999999999999999999999986
No 15
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=3.5e-38 Score=273.03 Aligned_cols=220 Identities=19% Similarity=0.305 Sum_probs=184.6
Q ss_pred eEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710 60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (293)
Q Consensus 60 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~ 136 (293)
+|++++.+++++++++|+.++.. ...|+||||++|+++.. ..+|+|||++.+. .+.++|.||.++ |.+|+
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~----~~~l~~~v~~~~~G~~s~ 74 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPL---QYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA----PDEISITVKRVPGGRVSN 74 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCC---CCCCCCCCeEEEEEecCCeEEeeeeeccCCCC----CCeEEEEEEECCCCccch
Confidence 68999999999999999975432 24689999999998643 3468999999886 688999999876 67999
Q ss_pred hhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 022710 137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215 (293)
Q Consensus 137 ~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 215 (293)
||+ ++++||+|.+.||+|+ |.++. +..++++||||||||||++++++++.......++.++|++|+.++++|.+
T Consensus 75 ~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 149 (231)
T cd06191 75 YLREHIQPGMTVEVMGPQGH-FVYQP----QPPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTPADMIFAQ 149 (231)
T ss_pred HHHhcCCCCCEEEEeCCccc-eEeCC----CCCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEecCCHHHHhHHH
Confidence 998 6999999999999998 76652 24678999999999999999999998666678999999999999999999
Q ss_pred HHHHHHhC--CcEEEEEEecCC--CCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710 216 KFKEWESS--GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 216 ~l~~l~~~--~i~~~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
+|++|+.. ++++++++++++ +.|.+..+++.+.+.+. ...+..+..+|+|||+.|++.+.+.|++.|+++++|++
T Consensus 150 el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~ 228 (231)
T cd06191 150 ELRELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAA-LIPDRLEREAFICGPAGMMDAVETALKELGMPPERIHT 228 (231)
T ss_pred HHHHHHHhCCCeEEEEEECCCCCCccccCCcccccHHHHHH-hCccccCCeEEEECCHHHHHHHHHHHHHcCCCHHHeee
Confidence 99999863 889999888753 34556667777655542 22233457899999999999999999999999999998
Q ss_pred c
Q 022710 292 N 292 (293)
Q Consensus 292 ~ 292 (293)
|
T Consensus 229 E 229 (231)
T cd06191 229 E 229 (231)
T ss_pred c
Confidence 7
No 16
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=5.4e-38 Score=271.69 Aligned_cols=222 Identities=21% Similarity=0.338 Sum_probs=188.0
Q ss_pred eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (293)
Q Consensus 59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s 135 (293)
.+|++++.+++++++++|+.++.. ...|+||||+.|+++..+ ..|+|||++.|.+ .+.++|+||..+ |.+|
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~---~~~l~~~vk~~~~G~~s 74 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGS---LFAYKPGQFLTLELEIDGETVYRAYTLSSSPSR---PDSLSITVKRVPGGLVS 74 (231)
T ss_pred CeEEEEEEcCCCeEEEEEECCCCC---cCCcCCCCeEEEEEecCCCeEEEeeecccCCCC---CCcEEEEEEEcCCCcch
Confidence 378999999999999999976432 257899999999997544 4689999999875 678999999876 6899
Q ss_pred Hhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710 136 EVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (293)
Q Consensus 136 ~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (293)
+||+ ++++||++.+.||+|. |.+.. ...+++||||||+||||++++++++.+.+...+++++|++|+.++++|.
T Consensus 75 ~~l~~~~~~G~~v~i~gP~G~-f~~~~----~~~~~~vlIagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~ 149 (231)
T cd06215 75 NWLHDNLKVGDELWASGPAGE-FTLID----HPADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFA 149 (231)
T ss_pred HHHHhcCCCCCEEEEEcCcce-eEeCC----CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCcEEEEEecCChhhhhHH
Confidence 9997 6999999999999998 76542 2468999999999999999999999876666789999999999999999
Q ss_pred HHHHHHHh--CCcEEEEEEecCCCC-CCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710 215 DKFKEWES--SGVKIVPVLSQPDGN-WSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 215 ~~l~~l~~--~~i~~~~~~s~~~~~-~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
++|++|.. .+++++++++++++. |.+..|++++...+. ...+..+..+|+|||+.|++.+.+.|++.|+++++|++
T Consensus 150 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~~~~~~~~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~ 228 (231)
T cd06215 150 DELEELARRHPNFRLHLILEQPAPGAWGGYRGRLNAELLAL-LVPDLKERTVFVCGPAGFMKAVKSLLAELGFPMSRFHQ 228 (231)
T ss_pred HHHHHHHHHCCCeEEEEEEccCCCCcccccCCcCCHHHHHH-hcCCccCCeEEEECCHHHHHHHHHHHHHcCCCHHHeee
Confidence 99999987 478888888887664 777889998755443 22333457899999999999999999999999999998
Q ss_pred c
Q 022710 292 N 292 (293)
Q Consensus 292 ~ 292 (293)
+
T Consensus 229 e 229 (231)
T cd06215 229 E 229 (231)
T ss_pred e
Confidence 7
No 17
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=6.3e-38 Score=270.79 Aligned_cols=217 Identities=22% Similarity=0.428 Sum_probs=185.1
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~ 136 (293)
+++|++++.+++++++++|+.+. ...|+||||+.|++++....|+|||++.|.. .+.++|+||..+ |.+|+
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~-----~~~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~---~~~l~~~vk~~~~G~~s~ 73 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDR-----PIAYKAGQYAELTLPGLPAARSYSFANAPQG---DGQLSFHIRKVPGGAFSG 73 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCC-----CCCcCCCCEEEEEeCCCCcccccccCCCCCC---CCEEEEEEEECCCCcchH
Confidence 57899999999999999998642 2468999999999986666899999999874 689999999865 68999
Q ss_pred hhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHH
Q 022710 137 VLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQD 215 (293)
Q Consensus 137 ~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~ 215 (293)
+|. .+++||+|.++||+|. |.+.. ..++++|||||+||||++++++++.+.+...++.++|++|+.++++|.+
T Consensus 74 ~l~~~l~~G~~v~i~gP~G~-~~~~~-----~~~~~lliagG~GiaP~~~~~~~~~~~~~~~~i~l~~~~r~~~~~~~~~ 147 (227)
T cd06213 74 WLFGADRTGERLTVRGPFGD-FWLRP-----GDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFGARTQRDLYALD 147 (227)
T ss_pred HHHhcCCCCCEEEEeCCCcc-eEeCC-----CCCcEEEEecccchhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhccHH
Confidence 995 5999999999999998 54541 3478999999999999999999998766667899999999999999999
Q ss_pred HHHHHHhC---CcEEEEEEecCC--CCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCee
Q 022710 216 KFKEWESS---GVKIVPVLSQPD--GNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290 (293)
Q Consensus 216 ~l~~l~~~---~i~~~~~~s~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~ 290 (293)
+|++++.. +++++.+++++. ..|.+..|++.+.+.+. . ..+..+|+|||++|++.+.+.|++.|+++++||
T Consensus 148 ~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~--~--~~~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~ 223 (227)
T cd06213 148 EIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEV--L--LAATEAYLCGPPAMIDAAIAVLRALGIAREHIH 223 (227)
T ss_pred HHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHHHHHhh--c--cCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEe
Confidence 99998853 688888887753 34667778888876552 2 356789999999999999999999999999999
Q ss_pred cc
Q 022710 291 KN 292 (293)
Q Consensus 291 ~~ 292 (293)
.+
T Consensus 224 ~e 225 (227)
T cd06213 224 AD 225 (227)
T ss_pred cc
Confidence 86
No 18
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=7.4e-38 Score=280.53 Aligned_cols=238 Identities=19% Similarity=0.275 Sum_probs=192.5
Q ss_pred hhccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCCCCCC
Q 022710 48 AVRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFASASG 121 (293)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~~~~~ 121 (293)
.+.+++..|..++|++++.+++++..++|+..++. ....|+||||+.|+++.. ...|+||+++.|.+ ++
T Consensus 25 ~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~--~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~---~~ 99 (300)
T PTZ00319 25 PVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPT--QRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE---KG 99 (300)
T ss_pred ccccCcCceEEEEEEEEEEcCCCceEEEEECCCCc--ccCCCccceEEEEEEEeCCCCccceEEeeeccCCCccc---CC
Confidence 56678889999999999999999999999975432 235789999999999743 23689999998865 78
Q ss_pred eEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCC----CCC-------CCCCeEEEEEeCcch
Q 022710 122 AFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRI----QPP-------DEYPTVLIFATGSGI 180 (293)
Q Consensus 122 ~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~----~p~-------~~~~~ivlia~GtGI 180 (293)
.++|+||.+ .|.+|+||+++++||+|.++||+|. |.+... .+. ...++++||||||||
T Consensus 100 ~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~-f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGI 178 (300)
T PTZ00319 100 YVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGK-FEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGI 178 (300)
T ss_pred EEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEcccee-eEecCCcceeeccccccccccccceEEEEecCccc
Confidence 999999986 3799999999999999999999998 544310 000 123589999999999
Q ss_pred hHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHHHHHHHhC-CcEEEEEEec-CCCCCCccccccchHHHhhhcc-C
Q 022710 181 SPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDKFKEWESS-GVKIVPVLSQ-PDGNWSGETGYVQAAFSRAKKI-F 256 (293)
Q Consensus 181 aP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-~i~~~~~~s~-~~~~~~~~~g~v~~~~~~~~~~-~ 256 (293)
||++++++++.... +..+++|+|++|+.++++|.++|++++.. ++++++++++ +++.|.+..|++++.+.++... .
T Consensus 179 aP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~ 258 (300)
T PTZ00319 179 TPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAAKDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVP 258 (300)
T ss_pred CHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHhhCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCc
Confidence 99999999987653 44689999999999999999999987543 7888888887 4456777889999876653211 1
Q ss_pred -----CCCCcEEEEeCChHHHH-HHHHHHHHcCCCccCeec
Q 022710 257 -----NPQGTGVVLCGQKQMAE-EVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 257 -----~~~~~~v~vCGp~~~~~-~~~~~L~~~Gv~~~~I~~ 291 (293)
+..+..+|+|||+.|++ .+.+.|++.|++.++||.
T Consensus 259 ~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~G~~~~~i~~ 299 (300)
T PTZ00319 259 DPQNSGIKKVMALMCGPPPMLQMAVKPNLEKIGYTADNMFT 299 (300)
T ss_pred cccccccCCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 11357899999999999 578899999999999985
No 19
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=5.8e-38 Score=275.22 Aligned_cols=220 Identities=27% Similarity=0.546 Sum_probs=186.8
Q ss_pred EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhc
Q 022710 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCG 140 (293)
Q Consensus 61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~ 140 (293)
|.+++.+++++..++|+++.+.. ....|+||||+.|+++..+. ++|||++.|.. ++.++|+||.. |.+|++|++
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~-~~~~~~pGQ~i~l~~~~~~~-~pySi~s~~~~---~~~l~~~Ik~~-G~~S~~L~~ 74 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDE-ELFTFKPGQFVMLSLPGVGE-APISISSDPTR---RGPLELTIRRV-GRVTEALHE 74 (253)
T ss_pred CceEEeccCCceEEEEEeCCCcc-ccCCcCCCCEEEEEcCCCCc-cceEecCCCCC---CCeEEEEEEeC-ChhhHHHHc
Confidence 46789999999999999765421 12578999999999986554 78999999975 78999999987 899999999
Q ss_pred CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHHHHH
Q 022710 141 LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDKFKE 219 (293)
Q Consensus 141 l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~ 219 (293)
+++||+|.++||+|++|.++. ...+++||||+|+||||+++|++++.... ...+++|+|++|+.++++|+++|++
T Consensus 75 l~~G~~v~i~gP~G~~f~~~~----~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~~~L~~ 150 (253)
T cd06221 75 LKPGDTVGLRGPFGNGFPVEE----MKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKE 150 (253)
T ss_pred CCCCCEEEEECCcCCCccccc----ccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchHHHHHH
Confidence 999999999999999775431 24689999999999999999999998643 4578999999999999999999999
Q ss_pred HHhC-CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 220 WESS-GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 220 l~~~-~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
|..+ +++++++++++.+.|.+..|++++.+.+. .....+..+|+|||++|++.+.+.|++.|+++++||..
T Consensus 151 l~~~~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~--~~~~~~~~vyicGp~~mv~~~~~~L~~~Gv~~~~i~~~ 222 (253)
T cd06221 151 WAKRSDVEVILTVDRAEEGWTGNVGLVTDLLPEL--TLDPDNTVAIVCGPPIMMRFVAKELLKLGVPEEQIWVS 222 (253)
T ss_pred HHhcCCeEEEEEeCCCCCCccCCccccchhHHhc--CCCcCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 9875 78888888887777777788998876653 23335678999999999999999999999999999975
No 20
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=6.1e-38 Score=271.69 Aligned_cols=217 Identities=23% Similarity=0.438 Sum_probs=182.5
Q ss_pred EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHhhh
Q 022710 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC 139 (293)
Q Consensus 61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~L~ 139 (293)
|++++.+++++++++|+.+++ ..|+||||+.|++++....|+|||++.|.. .+.++|+||..+ |.+|++|+
T Consensus 1 ~~~~~~~t~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~---~~~~~~~vk~~~~G~~s~~l~ 72 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGP-----ADFLPGQYALLALPGVEGARAYSMANLANA---SGEWEFIIKRKPGGAASNALF 72 (232)
T ss_pred CCceEEcCCCEEEEEEEcCCc-----cccCCCCEEEEECCCCCcccCccCCcCCCC---CCEEEEEEEEcCCCcchHHHh
Confidence 467889999999999997542 368999999999987657799999998874 689999999875 67899998
Q ss_pred c-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc--CCCCcEEEEEccCCccccccHHH
Q 022710 140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS--KERSDVRLYYGARNLKRMAYQDK 216 (293)
Q Consensus 140 ~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~--~~~~~v~l~~~~r~~~~~~~~~~ 216 (293)
+ +++||+|.++||+|.++ +. ++..++++|||||+||||++++++++.+. ....+++|+|++|+.++++|.++
T Consensus 73 ~~~~~g~~v~v~gP~G~~~-~~----~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~~~e 147 (232)
T cd06190 73 DNLEPGDELELDGPYGLAY-LR----PDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDE 147 (232)
T ss_pred hcCCCCCEEEEECCcccce-ec----CCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhhHHH
Confidence 6 79999999999999854 32 13467899999999999999999999865 44679999999999999999999
Q ss_pred HHHHHhC--CcEEEEEEecCCC----CCCccccccchHHHhhhccCC-CCCcEEEEeCChHHHHHHHHHHHHcCCC-ccC
Q 022710 217 FKEWESS--GVKIVPVLSQPDG----NWSGETGYVQAAFSRAKKIFN-PQGTGVVLCGQKQMAEEVTSIVLAEGVS-SEK 288 (293)
Q Consensus 217 l~~l~~~--~i~~~~~~s~~~~----~~~~~~g~v~~~~~~~~~~~~-~~~~~v~vCGp~~~~~~~~~~L~~~Gv~-~~~ 288 (293)
|++|... +++++++++++.. .|.+..|++++.+.+. ..+ ..+..+|+|||+.|++.+.+.|.+.|+. +++
T Consensus 148 l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~--~~~~~~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~ 225 (232)
T cd06190 148 LSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEAT--LGDRLAEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQ 225 (232)
T ss_pred HHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhh--ccCCccccEEEEECCHHHHHHHHHHHHHhCCCChHh
Confidence 9999874 7888888876543 3677889998876653 222 4568999999999999999999998754 999
Q ss_pred eecc
Q 022710 289 ILKN 292 (293)
Q Consensus 289 I~~~ 292 (293)
||++
T Consensus 226 i~~e 229 (232)
T cd06190 226 IHFD 229 (232)
T ss_pred eeec
Confidence 9987
No 21
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.1e-37 Score=267.69 Aligned_cols=212 Identities=19% Similarity=0.332 Sum_probs=177.1
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC---ceeeEEecCCCCCCCCCCeEEEEEEEeC--C
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG---KPTFLAIASPPSFASASGAFEFLVKSVA--G 132 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~r~ySi~s~p~~~~~~~~~~~~Vk~~~--G 132 (293)
.++|++++.++++++.++|+.++. ..|+||||++|+++..+ ..|+|||++.|. ++.++|+||.++ |
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~----~~~l~~~vk~~~~~g 72 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEG-----YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPE----DDVLEFVIKSYPDHD 72 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCc-----CCCCCCCEEEEEeeCCCCCccccccccccCCC----CCeEEEEEEEcCCCC
Confidence 578999999999999999986432 47899999999997543 579999999986 689999999875 5
Q ss_pred cchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 022710 133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA 212 (293)
Q Consensus 133 ~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~ 212 (293)
.+|++|+++++||+|.++||+|+ |.+ .+++||||+||||||++++++++...+...+++|+|++|+.++++
T Consensus 73 ~~s~~l~~l~~G~~v~i~gP~G~-~~~--------~~~~vlia~GtGiaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~ 143 (218)
T cd06196 73 GVTEQLGRLQPGDTLLIEDPWGA-IEY--------KGPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIFANKTEKDII 143 (218)
T ss_pred cHhHHHHhCCCCCEEEEECCccc-eEe--------cCceEEEecCCCcChHHHHHHHHHhCCCCceEEEEEecCCHHHHh
Confidence 78999999999999999999998 533 246999999999999999999998766667899999999999999
Q ss_pred cHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 213 ~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
|.++|++|. +++++++++++... ....|++++.+.++ ........+|+|||+.|++.+.+.|++.|+++++|+++
T Consensus 144 ~~~el~~l~--~~~~~~~~s~~~~~-~~~~g~~~~~~l~~--~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~i~~E 218 (218)
T cd06196 144 LKDELEKML--GLKFINVVTDEKDP-GYAHGRIDKAFLKQ--HVTDFNQHFYVCGPPPMEEAINGALKELGVPEDSIVFE 218 (218)
T ss_pred hHHHHHHhh--cceEEEEEcCCCCC-CeeeeEECHHHHHH--hcCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEecC
Confidence 999999996 56777777764332 12467887655543 22233468999999999999999999999999999986
No 22
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=100.00 E-value=2.8e-37 Score=287.92 Aligned_cols=226 Identities=21% Similarity=0.358 Sum_probs=187.3
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----ceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKS 129 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----~~r~ySi~s~p~~~~~~~~~~~~Vk~ 129 (293)
..|.+++|++++.++++++.++|+.++... ...|+||||+.|+++..+ .+|+|||++.|. ++.++|+||.
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~----~~~l~~~Vk~ 225 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGP--VADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN----GKYYRISVKR 225 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCc--CCCCCCCCeEEEEEecCCccccceeEEEeeeCCC----CCeEEEEEEE
Confidence 457889999999999999999999654321 247899999999986432 249999999986 6799999998
Q ss_pred eC-CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 022710 130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207 (293)
Q Consensus 130 ~~-G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~ 207 (293)
.+ |.+|.||++ +++||+|.++||+|+ |.++. +..+++|||||||||||++++++++.......+++|+|++|+
T Consensus 226 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~ 300 (399)
T PRK13289 226 EAGGKVSNYLHDHVNVGDVLELAAPAGD-FFLDV----ASDTPVVLISGGVGITPMLSMLETLAAQQPKRPVHFIHAARN 300 (399)
T ss_pred CCCCeehHHHhhcCCCCCEEEEEcCccc-cccCC----CCCCcEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCC
Confidence 76 689999986 999999999999998 76653 246789999999999999999999986666789999999999
Q ss_pred ccccccHHHHHHHHhC--CcEEEEEEecCCCC-CC----ccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHH
Q 022710 208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGN-WS----GETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVL 280 (293)
Q Consensus 208 ~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~-~~----~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~ 280 (293)
.++++|+++|++|... +++++++++++... +. +..|++.+..... .....+..+|+|||+.|++.+.+.|+
T Consensus 301 ~~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~--~~~~~~~~vyiCGp~~m~~~v~~~L~ 378 (399)
T PRK13289 301 GGVHAFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEA--WLPDPDADFYFCGPVPFMQFVAKQLL 378 (399)
T ss_pred hhhchHHHHHHHHHHhCCCcEEEEEECCCccccccCCcccccCcccHHHHHh--hCCCCCCEEEEECCHHHHHHHHHHHH
Confidence 9999999999999864 78888888875432 21 2347887654442 12223678999999999999999999
Q ss_pred HcCCCccCeecc
Q 022710 281 AEGVSSEKILKN 292 (293)
Q Consensus 281 ~~Gv~~~~I~~~ 292 (293)
+.|+++++||++
T Consensus 379 ~~Gv~~~~I~~E 390 (399)
T PRK13289 379 ELGVPEERIHYE 390 (399)
T ss_pred HcCCCHHHeeee
Confidence 999999999986
No 23
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=2e-37 Score=270.03 Aligned_cols=219 Identities=24% Similarity=0.385 Sum_probs=183.7
Q ss_pred eEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-C--ceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710 60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-G--KPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (293)
Q Consensus 60 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s 135 (293)
+|++++.+++++++++|+.+. ...|+||||+.|+++.. + ..|+|||++.+. ++.++|.||.++ |.+|
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~----~~~i~~~i~~~~~G~~s 71 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDI-----PFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPY----EENLEFYIILVPDGPLT 71 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCC-----CCccCCCCeEEEeccCCCCCeeeecccccCCCC----CCeEEEEEEEecCCCCc
Confidence 478899999999999998543 25789999999999864 3 468999999986 689999999864 7899
Q ss_pred HhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710 136 EVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (293)
Q Consensus 136 ~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (293)
+||+++++||+|.+. ||+|+ |.++.. ...++++||||||||||++++++++.......+++|+|++|+.++++|.
T Consensus 72 ~~l~~l~~Gd~v~v~~gP~G~-f~~~~~---~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~d~~~~ 147 (241)
T cd06195 72 PRLFKLKPGDTIYVGKKPTGF-LTLDEV---PPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHGVRYAEELAYQ 147 (241)
T ss_pred hHHhcCCCCCEEEECcCCCCc-eeecCC---CCCceEEEEeeccchhhHHHHHHHHHhhCCCCcEEEEEccCCHHHhhhH
Confidence 999999999999999 99998 766531 1467999999999999999999999765566899999999999999999
Q ss_pred HHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhh---c---cCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 215 DKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK---K---IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 215 ~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~---~---~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
++|++|... +++++++++++++.| +..|++++.+.... . .....+..+|+|||++|++.+.+.|++.|++
T Consensus 148 ~el~~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~~~~~l~~~G~~ 226 (241)
T cd06195 148 DEIEALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMIDDTQELLKEKGFS 226 (241)
T ss_pred HHHHHHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 999999875 788988888877766 56788887654210 0 1122467899999999999999999999999
Q ss_pred c------cCeecc
Q 022710 286 S------EKILKN 292 (293)
Q Consensus 286 ~------~~I~~~ 292 (293)
+ .+||+|
T Consensus 227 ~~~~~~~~~~~~E 239 (241)
T cd06195 227 KNHRRKPGNITVE 239 (241)
T ss_pred ccccCCCceEEEe
Confidence 9 999876
No 24
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=2.4e-37 Score=265.79 Aligned_cols=215 Identities=27% Similarity=0.425 Sum_probs=180.1
Q ss_pred EeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHhhh
Q 022710 63 EISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC 139 (293)
Q Consensus 63 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~L~ 139 (293)
.++.++++++.++|+.++ ...|+||||+.|+++.. ...|+|||++.|.. .+.++|+||.++ |.+|+||+
T Consensus 2 ~~~~~~~~~~~~~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~---~~~~~l~vk~~~~G~~s~~l~ 73 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPN-----GFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDE---EGELELTVKIVPGGPFSAWLH 73 (223)
T ss_pred ceEEecCCeEEEEEecCC-----CCCcCCCcEEEEEecCCCCcceeeeeccCCCCC---CCeEEEEEEEeCCCchhhHHh
Confidence 467788999999998654 25789999999999863 56899999999974 589999999987 79999999
Q ss_pred cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH
Q 022710 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE 219 (293)
Q Consensus 140 ~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~ 219 (293)
++++||+|.+.||+|+++ +. .+..++++|||+|+||||++++++++.......+++++|++|+.++++|+++|++
T Consensus 74 ~~~~G~~v~i~gP~G~~~-~~----~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~ 148 (223)
T cd00322 74 DLKPGDEVEVSGPGGDFF-LP----LEESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPADLLFLDELEE 148 (223)
T ss_pred cCCCCCEEEEECCCcccc-cC----cccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCCHHHhhHHHHHHH
Confidence 999999999999999954 22 1367899999999999999999999986656789999999999999999999999
Q ss_pred HHh--CCcEEEEEEecCCCCCCccccccc--hHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 220 WES--SGVKIVPVLSQPDGNWSGETGYVQ--AAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 220 l~~--~~i~~~~~~s~~~~~~~~~~g~v~--~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
|.. .+++++++.+++...+....+.+. +.+.. ......+..+|+|||+.|++.+.+.|.+.|+++++|+++
T Consensus 149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~yvCGp~~m~~~~~~~L~~~gv~~~~i~~e 223 (223)
T cd00322 149 LAKEGPNFRLVLALSRESEAKLGPGGRIDREAEILA--LLPDDSGALVYICGPPAMAKAVREALVSLGVPEERIHTE 223 (223)
T ss_pred HHHhCCCeEEEEEecCCCCCCCcccceeeHHHHHHh--hcccccCCEEEEECCHHHHHHHHHHHHHcCCCHHHcccC
Confidence 986 378888888887666655555544 22222 223346789999999999999999999999999999975
No 25
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=4.5e-37 Score=268.14 Aligned_cols=221 Identities=23% Similarity=0.365 Sum_probs=184.7
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCC-CCCCCCeEEEEEEEe
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPS-FASASGAFEFLVKSV 130 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~-~~~~~~~~~~~Vk~~ 130 (293)
..+..++|++++.+++++++++|+.++. ...|+||||++|.++..+ ..|+|||++.+. . ++.++|+||.+
T Consensus 15 ~~~~~~~v~~i~~~~~~~~~i~l~~~~~----~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~---~~~l~~~ik~~ 87 (243)
T cd06216 15 ARELRARVVAVRPETADMVTLTLRPNRG----WPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQE---DGTITLTVKAQ 87 (243)
T ss_pred cceeEEEEEEEEEcCCCcEEEEEecCCC----CCCcCCCceEEEEEEECCeEEEEEEeccCCCcCC---CCeEEEEEEEc
Confidence 3566899999999999999999986432 357899999999986433 469999999885 4 78999999997
Q ss_pred C-CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 022710 131 A-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208 (293)
Q Consensus 131 ~-G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~ 208 (293)
+ |.+|.||++ +++||+|.+.||+|+ |.++. +..++++|||||+||||++++++++.......++.++|++|+.
T Consensus 88 ~~G~~s~~l~~~~~~Gd~v~i~gP~G~-f~l~~----~~~~~~v~iagG~Giap~~s~l~~~~~~~~~~~i~l~~~~r~~ 162 (243)
T cd06216 88 PDGLVSNWLVNHLAPGDVVELSQPQGD-FVLPD----PLPPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYARTR 162 (243)
T ss_pred CCCcchhHHHhcCCCCCEEEEECCcee-eecCC----CCCCCEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEEcCCh
Confidence 5 689999985 999999999999998 76652 2368999999999999999999999866556889999999999
Q ss_pred cccccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCc
Q 022710 209 KRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSS 286 (293)
Q Consensus 209 ~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~ 286 (293)
++++|.++|++|.+ .+++++++++++ +..|++.+...+. ...+..+..+|+|||+.|++++.+.|++.|++
T Consensus 163 ~~~~~~~el~~l~~~~~~~~~~~~~s~~-----~~~g~~~~~~l~~-~~~~~~~~~vyvcGp~~m~~~~~~~l~~~Gv~- 235 (243)
T cd06216 163 EDVIFADELRALAAQHPNLRLHLLYTRE-----ELDGRLSAAHLDA-VVPDLADRQVYACGPPGFLDAAEELLEAAGLA- 235 (243)
T ss_pred hhhHHHHHHHHHHHhCCCeEEEEEEcCC-----ccCCCCCHHHHHH-hccCcccCeEEEECCHHHHHHHHHHHHHCCCc-
Confidence 99999999999984 378888887764 3457777654442 22333457999999999999999999999999
Q ss_pred cCeeccC
Q 022710 287 EKILKNF 293 (293)
Q Consensus 287 ~~I~~~~ 293 (293)
++|+++.
T Consensus 236 ~~i~~e~ 242 (243)
T cd06216 236 DRLHTER 242 (243)
T ss_pred cceeecc
Confidence 9999873
No 26
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=100.00 E-value=2.6e-37 Score=272.43 Aligned_cols=217 Identities=18% Similarity=0.414 Sum_probs=183.4
Q ss_pred ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcch
Q 022710 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTA 135 (293)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s 135 (293)
..+++|+++++++++++.++|+.+ ..|+||||+.|++++.+. ++|||++.+ ++.++|+||.. |.+|
T Consensus 7 ~~~~~v~~i~~~t~~~~~~~l~~~-------~~~~pGQfi~l~~~~~~~-~pySi~~~~-----~~~~~~~Ik~~-G~~S 72 (263)
T PRK08221 7 PAAYKILDITKHTDIEYTFRVEVD-------GPVKPGQFFEVSLPKVGE-APISVSDYG-----DGYIDLTIRRV-GKVT 72 (263)
T ss_pred CccEEEEEEeccCCcEEEEEecCC-------CCCCCCceEEEEeCCCCc-ceeeccCCC-----CCEEEEEEEeC-Cchh
Confidence 346999999999999999999742 268999999999986544 789998875 67899999988 9999
Q ss_pred HhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCC-CCcEEEEEccCCccccccH
Q 022710 136 EVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-RSDVRLYYGARNLKRMAYQ 214 (293)
Q Consensus 136 ~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~-~~~v~l~~~~r~~~~~~~~ 214 (293)
++|+++++||+|.++||+|++|.++. ...+++||||+||||||++|+++++..... ..+++|+|++|+.++++|.
T Consensus 73 ~~L~~l~~Gd~v~v~gP~G~~f~~~~----~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~~ 148 (263)
T PRK08221 73 DEIFNLKEGDKLFLRGPYGNGFPVDT----YKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILFK 148 (263)
T ss_pred hHHHhCCCCCEEEEECCCCCCcccCc----cCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHH
Confidence 99999999999999999998776652 245799999999999999999999875433 4689999999999999999
Q ss_pred HHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 215 DKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 215 ~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
++|++|.. ++++++++++++..|.+..|++.+.+.+. ...+..+..+|+|||+.|++.+.+.|++.|++.++|+..
T Consensus 149 ~el~~~~~-~~~~~~~~~~~~~~~~~~~G~v~~~l~~~-~~~~~~~~~vylCGp~~mv~~~~~~L~~~Gv~~~~i~~~ 224 (263)
T PRK08221 149 EDLKRWRE-KINLILTLDEGEEGYRGNVGLVTKYIPEL-TLKDIDNMQVIVVGPPIMMKFTVLEFLKRGIKEENIWVS 224 (263)
T ss_pred HHHHHHhh-cCcEEEEecCCCCCCccCccccChhhHhc-cCCCcCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 99999987 44566667777777878889999866552 122335678999999999999999999999999999875
No 27
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=3e-37 Score=280.91 Aligned_cols=221 Identities=20% Similarity=0.346 Sum_probs=182.3
Q ss_pred eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-CceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-GKPTFLAIASPPSFASASGAFEFLVKSVA-GST 134 (293)
Q Consensus 57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~ 134 (293)
..++|.+++.++++++.++|+.++ ...|+||||++|++++. ...|+|||++.|.. .+.++|+||..+ |.+
T Consensus 10 ~~~~V~~i~~~t~~v~~l~l~~~~-----~~~f~pGQfv~l~~~~~~~~~R~ySias~p~~---~~~l~i~Vk~~~~G~~ 81 (332)
T PRK10684 10 NRMQVHSIVQETPDVWTISLICHD-----FYPYRAGQYALVSIRNSAETLRAYTLSSTPGV---SEFITLTVRRIDDGVG 81 (332)
T ss_pred eeEEEEEEEccCCCeEEEEEcCCC-----CCCcCCCCEEEEEecCCCEeeeeecccCCCCC---CCcEEEEEEEcCCCcc
Confidence 388999999999999999997532 24789999999999854 34689999999875 678999999976 688
Q ss_pred hHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccccc
Q 022710 135 AEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAY 213 (293)
Q Consensus 135 s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~ 213 (293)
|+||+ ++++||+|.+.||+|+ |.+.. ...+++||||||+||||+++|++++...+...+++|+|++|+.++++|
T Consensus 82 S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y~~r~~~~~~~ 156 (332)
T PRK10684 82 SQWLTRDVKRGDYLWLSDAMGE-FTCDD----KAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIFNVRTPQDVIF 156 (332)
T ss_pred hhHHHhcCCCCCEEEEeCCccc-cccCC----CCCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEEeCCChHHhhh
Confidence 99997 6999999999999998 75542 245789999999999999999999876666689999999999999999
Q ss_pred HHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710 214 QDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 214 ~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
.++|++|... +++++++.+++. ......|++.+....+ ...+..+..+|+|||+.|++.+.+.|++.|+++++||+
T Consensus 157 ~~el~~l~~~~~~~~~~~~~~~~~-~~~~~~grl~~~~l~~-~~~~~~~~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~ 234 (332)
T PRK10684 157 ADEWRQLKQRYPQLNLTLVAENNA-TEGFIAGRLTRELLQQ-AVPDLASRTVMTCGPAPYMDWVEQEVKALGVTADRFFK 234 (332)
T ss_pred HHHHHHHHHHCCCeEEEEEeccCC-CCCccccccCHHHHHH-hcccccCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEe
Confidence 9999999874 667766655432 1112468887655442 12333467899999999999999999999999999998
Q ss_pred c
Q 022710 292 N 292 (293)
Q Consensus 292 ~ 292 (293)
+
T Consensus 235 E 235 (332)
T PRK10684 235 E 235 (332)
T ss_pred e
Confidence 6
No 28
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=3.5e-37 Score=266.93 Aligned_cols=223 Identities=22% Similarity=0.383 Sum_probs=188.3
Q ss_pred eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (293)
Q Consensus 59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s 135 (293)
++|.+++.+++++..++|+.++.. ....++||||++|+++.. ...|+|||++.+.. ++.++|+||.++ |.+|
T Consensus 1 ~~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~---~~~~~~~v~~~~~G~~s 75 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPD--QVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDD---KGYFDLLIKIYPGGKMS 75 (234)
T ss_pred CEeEEeEecCCCEEEEEEECCCCC--CcCCCCcccEEEEEecCCCcccccccccccCCCc---CCEEEEEEEECCCCcch
Confidence 468999999999999999976531 235789999999999864 35689999998865 678999999974 7899
Q ss_pred HhhhcCCCCCEEEEEeecCCCccccCCCCCCCC-CeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEccCCcccccc
Q 022710 136 EVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEY-PTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAY 213 (293)
Q Consensus 136 ~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~-~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~~~ 213 (293)
+||+++++||+|.++||+|. |.++. +.. +++||||||+||||++++++++.... ...+++++|++|+.++.+|
T Consensus 76 ~~l~~~~~G~~v~i~gP~G~-~~~~~----~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~ 150 (234)
T cd06183 76 QYLHSLKPGDTVEIRGPFGK-FEYKP----NGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILL 150 (234)
T ss_pred hHHhcCCCCCEEEEECCccc-eeecC----CCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhh
Confidence 99999999999999999998 76652 233 79999999999999999999997543 4579999999999999999
Q ss_pred HHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhccC-CCCCcEEEEeCChHHHH-HHHHHHHHcCCCccC
Q 022710 214 QDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF-NPQGTGVVLCGQKQMAE-EVTSIVLAEGVSSEK 288 (293)
Q Consensus 214 ~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~v~vCGp~~~~~-~~~~~L~~~Gv~~~~ 288 (293)
.++|++|... +++++++++++++.|.+..|++++.+.+..... ...+..+|+|||++|++ .+++.|++.|+++++
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~l~~~G~~~~~ 230 (234)
T cd06183 151 REELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGLLKELGYKKDN 230 (234)
T ss_pred HHHHHHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999863 789998888887778888899988765532111 23567899999999999 999999999999999
Q ss_pred eec
Q 022710 289 ILK 291 (293)
Q Consensus 289 I~~ 291 (293)
||.
T Consensus 231 i~~ 233 (234)
T cd06183 231 VFK 233 (234)
T ss_pred EEe
Confidence 985
No 29
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=8.2e-37 Score=267.65 Aligned_cols=219 Identities=21% Similarity=0.339 Sum_probs=182.1
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA- 131 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~- 131 (293)
.|..++|.++++++++++.|+|..++... ..|+||||+.|.++..+ ..|.|||+|+|.. ++.+.|.||+.+
T Consensus 4 ~~~~~~V~~v~~~t~di~sf~l~~~~g~~---~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~---~~~~~isVk~~~~ 77 (266)
T COG1018 4 GFRRVTVTSVEPETDDVFSFTLEPPDGLR---LDFEPGQYITVGLPNGGEPLLRAYSLSSAPDE---DSLYRISVKREDG 77 (266)
T ss_pred ceEEEEEEEEEEecCceEEEEEEcCCCCc---cccCCCCeEEEEecCCCceeeEEEEeccCCCC---CceEEEEEEEeCC
Confidence 58899999999999999999999765431 26999999999999664 6799999999985 679999999998
Q ss_pred CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710 132 GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (293)
Q Consensus 132 G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~ 210 (293)
|..|+||+ ++++||+|.+.+|.|. |.++.. ...+++|||||+||||++||++.+.+.+. .+|.++|++|+.++
T Consensus 78 G~~S~~Lh~~lk~Gd~l~v~~P~G~-F~l~~~----~~~~~llla~G~GITP~lSml~~~~~~~~-~~v~l~h~~R~~~~ 151 (266)
T COG1018 78 GGGSNWLHDHLKVGDTLEVSAPAGD-FVLDDL----PERKLLLLAGGIGITPFLSMLRTLLDRGP-ADVVLVHAARTPAD 151 (266)
T ss_pred CcccHHHHhcCCCCCEEEEecCCCC-ccCCCC----CCCcEEEEeccccHhHHHHHHHHHHHhCC-CCEEEEEecCChhh
Confidence 79999999 7999999999999998 877642 34489999999999999999999987777 99999999999999
Q ss_pred cccHHHHHHHHhC--C-cEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 211 MAYQDKFKEWESS--G-VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 211 ~~~~~~l~~l~~~--~-i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
+.|+|+ +.+... + ..+..+.+ +....|+++...... ........+|+|||.+|++.++..|.+.|++.+
T Consensus 152 ~af~de-~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~--~~~~~~r~~y~CGp~~fm~av~~~l~~~g~~~~ 223 (266)
T COG1018 152 LAFRDE-LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLS--AAPDGGREVYLCGPGPFMQAVRLALEALGVPDD 223 (266)
T ss_pred cchhhH-HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhc--cCCCCCCEEEEECCHHHHHHHHHHHHHcCCChh
Confidence 999998 777653 3 34444443 223456666655442 222222899999999999999999999999999
Q ss_pred CeeccC
Q 022710 288 KILKNF 293 (293)
Q Consensus 288 ~I~~~~ 293 (293)
+||++.
T Consensus 224 ~vh~E~ 229 (266)
T COG1018 224 RVHLEG 229 (266)
T ss_pred cEEEee
Confidence 999863
No 30
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=7.4e-37 Score=263.15 Aligned_cols=215 Identities=16% Similarity=0.272 Sum_probs=175.6
Q ss_pred EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchHhhh
Q 022710 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAEVLC 139 (293)
Q Consensus 61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~~L~ 139 (293)
|.+++.+++++++++|+.++. ..|+||||++|++++ ...|+|||++.|.. .+.++|+||..+ |.+|.||+
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~-----~~~~pGQ~v~l~~~~-~~~r~ySi~s~~~~---~~~~~~~i~~~~~G~~s~~l~ 71 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRP-----LPYLPGQYVNLRRAG-GLARSYSPTSLPDG---DNELEFHIRRKPNGAFSGWLG 71 (222)
T ss_pred CceeeecCCCEEEEEEecCCC-----CCcCCCCEEEEEcCC-CCceeeecCCCCCC---CCEEEEEEEeccCCccchHHH
Confidence 467889999999999986532 468999999999986 45699999999874 589999999875 68999999
Q ss_pred c-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710 140 G-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (293)
Q Consensus 140 ~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (293)
+ +++||+|.+.||+|+++... ....++++|||||+||||+++++++++..+...++.++|++|+.++++|+++|+
T Consensus 72 ~~~~~G~~v~i~gP~G~~~~~~----~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~ 147 (222)
T cd06194 72 EEARPGHALRLQGPFGQAFYRP----EYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALL 147 (222)
T ss_pred hccCCCCEEEEecCcCCeeccC----CCCCCCEEEEecCcchhhHHHHHHHHHhcCCCccEEEEEecCChhhccCHHHHH
Confidence 7 79999999999999955332 125678999999999999999999988666678999999999999999999999
Q ss_pred HHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 219 EWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 219 ~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
+|+.. ++++++++++++..+.. ++..+.... .........+|+|||++|++.+++.|++.|+++++||++
T Consensus 148 ~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~~e 219 (222)
T cd06194 148 WLAREHPNFRYIPCVSEGSQGDPR--VRAGRIAAH--LPPLTRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRIYAD 219 (222)
T ss_pred HHHHHCCCeEEEEEEccCCCCCcc--cccchhhhh--hccccCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHeeec
Confidence 99863 78888888876544311 122222222 112234688999999999999999999999999999986
No 31
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=1.3e-36 Score=265.96 Aligned_cols=218 Identities=22% Similarity=0.367 Sum_probs=175.7
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEc--CCCceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVV--DVGKPTFLAIASPPSFASASGAFEFLVKSVA- 131 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~--~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~- 131 (293)
.|..++|++++++++++++++|+.+. ..|+||||++|.++ +....|+|||++.|. ++.++|+||.++
T Consensus 3 ~~~~~~V~~i~~~t~~v~~l~l~~~~------~~~~pGQfv~l~~~~~g~~~~R~ySias~p~----~~~l~~~ik~~~~ 72 (248)
T PRK10926 3 DWVTGKVTKVQNWTDALFSLTVHAPV------DPFTAGQFTKLGLEIDGERVQRAYSYVNAPD----NPDLEFYLVTVPE 72 (248)
T ss_pred ccEEEEEEEEEEcCCCeEEEEEeCCC------CCCCCCCEEEEEEecCCcEEEeeecccCCCC----CCeEEEEEEEeCC
Confidence 58999999999999999999998531 26899999999985 333569999999986 568999999875
Q ss_pred CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 022710 132 GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (293)
Q Consensus 132 G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~ 211 (293)
|.+|+||+++++||+|.+.||.+.+|.++.. ...++++||||||||||++++++++.+.+...+++|+|++|+.+++
T Consensus 73 G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~---~~~~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~ 149 (248)
T PRK10926 73 GKLSPRLAALKPGDEVQVVSEAAGFFVLDEV---PDCETLWMLATGTAIGPYLSILQEGKDLERFKNLVLVHAARYAADL 149 (248)
T ss_pred CCcChHHHhCCCCCEEEEecCCCcceEccCC---CCCCeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEEEEeCCcHHHH
Confidence 7899999999999999999988555665521 1347999999999999999999998755566789999999999999
Q ss_pred ccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhh------ccCCCCCcEEEEeCChHHHHHHHHHHHH-
Q 022710 212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK------KIFNPQGTGVVLCGQKQMAEEVTSIVLA- 281 (293)
Q Consensus 212 ~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~------~~~~~~~~~v~vCGp~~~~~~~~~~L~~- 281 (293)
+|+++|++|+.. +++++.++++++. +.+..|++++.+.+.. ...+..+..+|+|||+.|++.+.+.|.+
T Consensus 150 ~~~~el~~l~~~~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~~~~~~l~~~ 228 (248)
T PRK10926 150 SYLPLMQELEQRYEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVRDTQQLLKET 228 (248)
T ss_pred HHHHHHHHHHHhCcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHHHHHHHHHHh
Confidence 999999999763 6888888887542 3335688876543211 0112345789999999999999999976
Q ss_pred cCCCc
Q 022710 282 EGVSS 286 (293)
Q Consensus 282 ~Gv~~ 286 (293)
.|+++
T Consensus 229 ~~~~~ 233 (248)
T PRK10926 229 RQMTK 233 (248)
T ss_pred cCccc
Confidence 57754
No 32
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=9.6e-37 Score=279.84 Aligned_cols=229 Identities=21% Similarity=0.306 Sum_probs=185.2
Q ss_pred ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-C
Q 022710 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-G 132 (293)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G 132 (293)
|+.++|.+++.++++++.|+|+.+++. .....|+|||||+|+++.. ...|+|||++.|. ++.++|+||.++ |
T Consensus 1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~-~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~----~~~l~i~vk~~~~G 75 (352)
T TIGR02160 1 FHRLTVAEVERLTADAVAISFEIPDEL-AEDYRFAPGQHLTLRREVDGEELRRSYSICSAPA----PGEIRVAVKKIPGG 75 (352)
T ss_pred CeEeEEEEEEecCCCeEEEEEeCCccc-cccCCCCCCCeEEEEEecCCcEeeeeccccCCCC----CCcEEEEEEEeCCC
Confidence 567899999999999999999875421 0124789999999998633 3468999999885 689999999986 5
Q ss_pred cchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 022710 133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (293)
Q Consensus 133 ~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~ 211 (293)
.+|.||+ ++++||+|.+.||+|+ |.++... ...++++|||||+||||+++|+++++..+...++.|+|++|+.+++
T Consensus 76 ~~S~~l~~~l~~Gd~v~v~gP~G~-f~~~~~~--~~~~~~lliagG~GItP~~s~l~~~~~~~~~~~v~l~~~~r~~~d~ 152 (352)
T TIGR02160 76 LFSTWANDEIRPGDTLEVMAPQGL-FTPDLST--PHAGHYVAVAAGSGITPMLSIAETVLAAEPRSTFTLVYGNRRTASV 152 (352)
T ss_pred cchHHHHhcCCCCCEEEEeCCcee-eecCCCc--cccccEEEEeccccHhHHHHHHHHHHhcCCCceEEEEEEeCCHHHH
Confidence 7899997 7999999999999998 7655311 1347899999999999999999998876666899999999999999
Q ss_pred ccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhh---ccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK---KIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 212 ~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~---~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
+|.++|++|... +++++++++++++.+.+..|+++.....+. .........+|+|||+.|++.+++.|.+.|++
T Consensus 153 ~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~ 232 (352)
T TIGR02160 153 MFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTGLGVP 232 (352)
T ss_pred HHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence 999999999763 488888888876665555677653222111 11123457899999999999999999999999
Q ss_pred ccCeecc
Q 022710 286 SEKILKN 292 (293)
Q Consensus 286 ~~~I~~~ 292 (293)
+++||++
T Consensus 233 ~~~i~~E 239 (352)
T TIGR02160 233 AGRVHLE 239 (352)
T ss_pred HHHEEEE
Confidence 9999986
No 33
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=8.3e-37 Score=285.07 Aligned_cols=224 Identities=25% Similarity=0.425 Sum_probs=187.0
Q ss_pred eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-------------------------------Cce
Q 022710 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------------------------GKP 105 (293)
Q Consensus 57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------------------------------~~~ 105 (293)
.+++|++++.++++++.++|+.++... ..|+||||++|++++. ...
T Consensus 134 ~~~~V~~~~~ls~~i~~l~l~~~~~~~---~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (409)
T PRK05464 134 WECTVISNDNVATFIKELVLKIPEGEE---VPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVI 210 (409)
T ss_pred EEEEEEEcccCCchhheEEEecCCCCc---ccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCcee
Confidence 379999999999999999999764322 3689999999998742 346
Q ss_pred eeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEE
Q 022710 106 TFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFA 175 (293)
Q Consensus 106 r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia 175 (293)
|+|||++.|.. ++.++|+||.. .|.+|.||+++++||+|.+.||+|++| +. +..+++||||
T Consensus 211 R~ySias~p~~---~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~-~~-----~~~~~ivlIA 281 (409)
T PRK05464 211 RAYSMANYPEE---KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFGEFF-AK-----DTDAEMVFIG 281 (409)
T ss_pred eeeccCCCCCC---CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEccccCcE-ec-----CCCceEEEEE
Confidence 89999999975 67999999973 378999999999999999999999954 33 1467999999
Q ss_pred eCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecC--CCCCCccccccchHHH
Q 022710 176 TGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAFS 250 (293)
Q Consensus 176 ~GtGIaP~~sll~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~--~~~~~~~~g~v~~~~~ 250 (293)
|||||||+++++++++.. +...+++|+|++|+.++++|.++|++|... +++++++++++ ++.|.+..|++.+.+.
T Consensus 282 gGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l~ 361 (409)
T PRK05464 282 GGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHNVLY 361 (409)
T ss_pred eccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCHHHH
Confidence 999999999999987654 345789999999999999999999999763 78888888764 3557778899998776
Q ss_pred hhhc--cCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 251 RAKK--IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 251 ~~~~--~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
+... .....+..+|+|||+.|++.+.+.|++.|+++++||++
T Consensus 362 ~~~l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E 405 (409)
T PRK05464 362 ENYLKDHEAPEDCEYYMCGPPMMNAAVIKMLKDLGVEDENILLD 405 (409)
T ss_pred HhhhhhcCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEc
Confidence 5321 12335678999999999999999999999999999987
No 34
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=2.4e-36 Score=263.04 Aligned_cols=226 Identities=26% Similarity=0.413 Sum_probs=186.2
Q ss_pred eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-Cc
Q 022710 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GS 133 (293)
Q Consensus 57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~ 133 (293)
..++|++++.+++++++++|+.+.+.. ....|+||||+.|+++.. ..+|+||+++.+. ++.++|+|+.++ |.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~----~~~l~~~i~~~~~G~ 76 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELR-DAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPG----DDELRITVKRVPGGR 76 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccC-CCCCcCCCCeEEEEeecCCCeeeeeeeecCCCC----CCcEEEEEEEcCCCc
Confidence 468899999999999999999754310 114789999999999743 3678999999886 458999999875 68
Q ss_pred chHhhh-cCCCCCEEEEEeecCCCccccCCCCCC-CCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 022710 134 TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPD-EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (293)
Q Consensus 134 ~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~-~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~ 211 (293)
+|.||+ ++++|+++.+.||+|+ |.+.. + .+++++|||+||||||++++++++.......+++++|++|+.+++
T Consensus 77 ~s~~l~~~~~~G~~v~i~gP~G~-~~~~~----~~~~~~~llia~GtGiap~~~~~~~~~~~~~~~~v~l~~~~r~~~~~ 151 (241)
T cd06214 77 FSNWANDELKAGDTLEVMPPAGR-FTLPP----LPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLVYGNRTEASV 151 (241)
T ss_pred cchhHHhccCCCCEEEEeCCccc-cccCC----CCCCCcEEEEecccChhhHHHHHHHHHhcCCCCcEEEEEEeCCHHHh
Confidence 899997 7999999999999998 54442 2 478999999999999999999998866556889999999999999
Q ss_pred ccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc---cCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 212 AYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK---IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 212 ~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~---~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
+|.++|++|... ++++++++++++..|.+..|++.+.+..+.. ........+|+|||+.|++.+.+.|++.|++
T Consensus 152 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~~v~~~l~~~G~~ 231 (241)
T cd06214 152 IFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGVP 231 (241)
T ss_pred hHHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHHHHHHHHHHcCCC
Confidence 999999999764 6788888887766676677888765443211 1223468899999999999999999999999
Q ss_pred ccCeecc
Q 022710 286 SEKILKN 292 (293)
Q Consensus 286 ~~~I~~~ 292 (293)
+++|+++
T Consensus 232 ~~~i~~e 238 (241)
T cd06214 232 AERIHRE 238 (241)
T ss_pred HHHeecc
Confidence 9999986
No 35
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=100.00 E-value=1.7e-36 Score=266.95 Aligned_cols=215 Identities=17% Similarity=0.399 Sum_probs=180.2
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
.++|+++.+++++++.+++.. + ..|+||||++|++++.+ .++||+++.+ ++.++|+||.. |.+|.+
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~--~-----~~~~pGQ~v~l~~~~~~-~~pySi~~~~-----~~~l~~~Vk~~-G~~S~~ 72 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSY--D-----GPVKPGQFFEVSLPKYG-EAPISVSGIG-----EGYIDLTIRRV-GKVTDE 72 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCC--C-----CCCCCCcEEEEEecCCC-ccceecCCCC-----CCeEEEEEEeC-chhhHH
Confidence 589999999999999888863 1 36899999999998644 4789998853 68999999987 999999
Q ss_pred hhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCcEEEEEccCCccccccHHH
Q 022710 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSDVRLYYGARNLKRMAYQDK 216 (293)
Q Consensus 138 L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~ 216 (293)
|+++++||+|.++||+|++|.++. +..++++|||+|+||||++++++++.... ...++.|+|++|+.++++|+++
T Consensus 73 L~~l~~Gd~v~i~gP~G~~f~~~~----~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~~~e 148 (261)
T TIGR02911 73 VFTLKEGDNLFLRGPYGNGFDVDN----YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKED 148 (261)
T ss_pred HHcCCCCCEEEEecCCCCCcccCc----cCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhHHHH
Confidence 999999999999999999776552 24679999999999999999999987543 3468999999999999999999
Q ss_pred HHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 217 l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
|++|... ..++++++.+.+.|.+..|++.+.+.+. ...+..+..+|+|||++|++++++.|++.|+++++|++.
T Consensus 149 L~~l~~~-~~~~~~~~~~~~~~~~~~g~v~~~l~~~-~~~~~~~~~v~lCGp~~mv~~~~~~L~~~Gv~~~~i~~~ 222 (261)
T TIGR02911 149 IAEWKGN-INLTLTLDEAEEDYKGNIGLVTKYIPEL-TLKDIEEVQAIVVGPPIMMKFTVQELLKKGIKEENIWVS 222 (261)
T ss_pred HHHHHhc-CcEEEEEcCCCCCCcCCeeccCHhHHhc-cCCCccceEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 9999873 4556666666667777888998766542 122344678999999999999999999999999999875
No 36
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=274.04 Aligned_cols=213 Identities=17% Similarity=0.291 Sum_probs=176.4
Q ss_pred ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GST 134 (293)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~ 134 (293)
..+++|++++.++++++.++|+... ...|+||||++|++++ +..|+|||++.|.. .+.++|+||.++ |.+
T Consensus 91 ~~~~~V~~~~~~t~dv~~l~l~~~~-----~~~~~~GQfv~l~~~~-~~~R~ySias~p~~---~~~l~~~I~~~~~G~~ 161 (312)
T PRK05713 91 GLPARVVALDWLGGDVLRLRLEPER-----PLRYRAGQHLVLWTAG-GVARPYSLASLPGE---DPFLEFHIDCSRPGAF 161 (312)
T ss_pred cCCeEEEEEecCCCCEEEEEEccCC-----cCCcCCCCEEEEecCC-CcccccccCcCCCC---CCeEEEEEEEcCCCcc
Confidence 4579999999999999999998532 2578999999999864 46799999999865 688999999765 678
Q ss_pred hHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710 135 AEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (293)
Q Consensus 135 s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (293)
|.||+++++||+|.+++|+|..|.++. ....+++|||||||||||++|+++++.+.+...+++|+|++|+.++++|.
T Consensus 162 s~~l~~l~~Gd~v~l~~p~gg~~~~~~---~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~ 238 (312)
T PRK05713 162 CDAARQLQVGDLLRLGELRGGALHYDP---DWQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRLLHLARDSAGHYLA 238 (312)
T ss_pred chhhhcCCCCCEEEEccCCCCceEecC---CCCCCcEEEEecCcChhHHHHHHHHHHhcCCCCcEEEEEEcCchHHhhhH
Confidence 999999999999999999985565542 11457899999999999999999999876666789999999999999999
Q ss_pred HHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 215 ~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
++|++|+.. +++++++.+. .+.+.+.+ ......+..+|+|||+.|++.+.+.|.+.|++.++||++
T Consensus 239 ~el~~l~~~~~~~~~~~~~~~----------~~~~~l~~--~~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~~i~~e 306 (312)
T PRK05713 239 EPLAALAGRHPQLSVELVTAA----------QLPAALAE--LRLVSRQTMALLCGSPASVERFARRLYLAGLPRNQLLAD 306 (312)
T ss_pred HHHHHHHHHCCCcEEEEEECc----------chhhhhhh--ccCCCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeeec
Confidence 999999863 7888776543 23343332 111234578999999999999999999999999999986
No 37
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=1.7e-36 Score=282.60 Aligned_cols=225 Identities=25% Similarity=0.421 Sum_probs=186.8
Q ss_pred ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-------------------------------Cc
Q 022710 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------------------------GK 104 (293)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------------------------------~~ 104 (293)
+.+++|++++.+++++++++|+.++.. ...|+||||++|+++.. ..
T Consensus 129 ~~~~~v~~~~~~s~~i~~l~l~~~~~~---~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (405)
T TIGR01941 129 KWECEVISNDNVATFIKELVLKLPDGE---SVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEET 205 (405)
T ss_pred eeeeEEEEcccccchhheEEEecCCCc---eeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCcc
Confidence 347999999999999999999976432 23689999999998732 34
Q ss_pred eeeEEecCCCCCCCCCCeEEEEEEEe---------C-CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEE
Q 022710 105 PTFLAIASPPSFASASGAFEFLVKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIF 174 (293)
Q Consensus 105 ~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivli 174 (293)
.|+|||++.|.. ++.++|+||.. + |.+|.||+++++||+|.++||+|+++ +.. ..+++|||
T Consensus 206 ~R~ySias~p~~---~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~-l~~-----~~~~lvlI 276 (405)
T TIGR01941 206 VRAYSMANYPAE---KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFGEFF-AKD-----TDAEMVFI 276 (405)
T ss_pred ceeecCCCCCCC---CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccCCCe-ecC-----CCCCEEEE
Confidence 699999999975 78999999973 3 78999999999999999999999954 331 45789999
Q ss_pred EeCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecC--CCCCCccccccchHH
Q 022710 175 ATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGYVQAAF 249 (293)
Q Consensus 175 a~GtGIaP~~sll~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~--~~~~~~~~g~v~~~~ 249 (293)
|||+||||+++++++.+.. +...+++++|++|+.++++|.++|++|... +++++++++++ ++.|.+..|++++.+
T Consensus 277 AgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~l 356 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHNVL 356 (405)
T ss_pred ecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCHHH
Confidence 9999999999999976643 445789999999999999999999999764 78888887764 456778889998877
Q ss_pred Hhhhc--cCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 250 SRAKK--IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 250 ~~~~~--~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
.++.. .....+..+|+|||+.|++.+.+.|++.|+++++||++
T Consensus 357 ~~~~l~~~~~~~~~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E 401 (405)
T TIGR01941 357 YENYLKDHDAPEDCEFYMCGPPMMNAAVIKMLEDLGVERENILLD 401 (405)
T ss_pred HHhhhcccCCCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 54321 12235678999999999999999999999999999987
No 38
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=5.4e-36 Score=270.04 Aligned_cols=214 Identities=18% Similarity=0.330 Sum_probs=174.6
Q ss_pred CCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-----CceeeEEecCCCCCCCCCCeEEEEE
Q 022710 53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLAIASPPSFASASGAFEFLV 127 (293)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-----~~~r~ySi~s~p~~~~~~~~~~~~V 127 (293)
...|.+++|.+++.+++++++++|+++.. ..+.|.||||+++.++.. ...|.|||+|.|.. ++.++|+|
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~---~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~---~~~le~~I 122 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSE---EEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT---KGYFDIIV 122 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcc---cccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCC---CCeEEEEE
Confidence 45799999999999999999999997542 235789999999987632 24699999999975 78999999
Q ss_pred EEeC-CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC------CCCcEE
Q 022710 128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK------ERSDVR 200 (293)
Q Consensus 128 k~~~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~------~~~~v~ 200 (293)
|+++ |.+|.||+++++||+|.++||.|. |.++. +..+++|||||||||||++||++++++.+ +..+|+
T Consensus 123 K~~~~G~~S~~L~~lk~Gd~v~v~GP~f~-~~~~~----~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~ 197 (325)
T PTZ00274 123 KRKKDGLMTNHLFGMHVGDKLLFRSVTFK-IQYRP----NRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLS 197 (325)
T ss_pred EEcCCCcccHHHhcCCCCCEEEEeCCeee-cccCC----CCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEE
Confidence 9986 589999999999999999999775 54432 34579999999999999999999987543 345899
Q ss_pred EEEccCCccccccHHHHHHHHhC---CcEEEEEEecC--CCCCCccccccchHHHhhhccCCC--CCcEEEEeCChHHHH
Q 022710 201 LYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQP--DGNWSGETGYVQAAFSRAKKIFNP--QGTGVVLCGQKQMAE 273 (293)
Q Consensus 201 l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~--~~~~~~~~g~v~~~~~~~~~~~~~--~~~~v~vCGp~~~~~ 273 (293)
|+|++|+.++++|.++|++|+.. +++++++++++ ++.|.+..|++++.+..+. ..+. .+..+|+|||++|++
T Consensus 198 Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~-~~~~~~~~~~vylCGPp~Mm~ 276 (325)
T PTZ00274 198 FLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRT-MPAPEEKKKIIMLCGPDQLLN 276 (325)
T ss_pred EEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHh-cCCCccCCcEEEEeCCHHHHH
Confidence 99999999999999999999863 58898888865 4567788899998764421 2222 336799999999999
Q ss_pred HHHHH
Q 022710 274 EVTSI 278 (293)
Q Consensus 274 ~~~~~ 278 (293)
.+...
T Consensus 277 av~~~ 281 (325)
T PTZ00274 277 HVAGT 281 (325)
T ss_pred HhcCC
Confidence 88543
No 39
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=1.3e-35 Score=296.25 Aligned_cols=236 Identities=20% Similarity=0.304 Sum_probs=195.3
Q ss_pred hccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEE
Q 022710 49 VRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFL 126 (293)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~ 126 (293)
..+++..|.+++|++++.++++++.|+|+++.+. ....++|||||+|+++..+ ..|.||+++.+.. .+.|+|+
T Consensus 627 ~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~--~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~---~g~lel~ 701 (888)
T PLN02252 627 VALNPREKIPCRLVEKISLSHDVRLFRFALPSED--HVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDE---VGHFELV 701 (888)
T ss_pred cccccCceEEEEEEEEEEccCCeEEEEEEECCCc--ccCCCCCCCEEEEEEecCCeEEEeeeEecccCCC---CCEEEEE
Confidence 4567788999999999999999999999986542 3357899999999986333 4689999999875 7899999
Q ss_pred EEEe----------CCcchHhhhcCCCCCEEEEEeecCCC-------ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHH
Q 022710 127 VKSV----------AGSTAEVLCGLKKGDVVEISQVMGRG-------FAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189 (293)
Q Consensus 127 Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~-------f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~ 189 (293)
||.+ .|.+|++|+++++||+|.|+||+|++ |.++.. +...++++||||||||||++++|++
T Consensus 702 VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~--~~~~~~vvmIAGGsGITPi~silr~ 779 (888)
T PLN02252 702 IKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGK--PKFAKKLAMLAGGTGITPMYQVIQA 779 (888)
T ss_pred EEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccc--cccCceEEEEecceehhHHHHHHHH
Confidence 9987 37899999999999999999999982 222210 1245799999999999999999999
Q ss_pred hhcc-CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCC-CCCCccccccchHHHhhhccCCCCCcEEE
Q 022710 190 GFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPD-GNWSGETGYVQAAFSRAKKIFNPQGTGVV 264 (293)
Q Consensus 190 ~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~-~~~~~~~g~v~~~~~~~~~~~~~~~~~v~ 264 (293)
++.. .+..++.|+|++|+.++++|+++|++|+.+ +++++++++++. +.|.+..|++++.+.++.......+..+|
T Consensus 780 ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~vy 859 (888)
T PLN02252 780 ILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETLAL 859 (888)
T ss_pred HHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeEEE
Confidence 9764 346799999999999999999999999863 689999988865 67888899999876653222223467899
Q ss_pred EeCChHHHHH-HHHHHHHcCCCccCeec
Q 022710 265 LCGQKQMAEE-VTSIVLAEGVSSEKILK 291 (293)
Q Consensus 265 vCGp~~~~~~-~~~~L~~~Gv~~~~I~~ 291 (293)
+|||+.|++. ++..|++.|+++++|++
T Consensus 860 iCGPp~Mi~~av~~~L~~~G~~~~~I~~ 887 (888)
T PLN02252 860 MCGPPPMIEFACQPNLEKMGYDKDSILV 887 (888)
T ss_pred EeCCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 9999999995 78899999999999975
No 40
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=2.5e-35 Score=265.24 Aligned_cols=223 Identities=22% Similarity=0.309 Sum_probs=175.1
Q ss_pred CceeeeEeEeeeCC-----CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--------ceeeEEecCCCCCCC-CC
Q 022710 55 VWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--------KPTFLAIASPPSFAS-AS 120 (293)
Q Consensus 55 ~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--------~~r~ySi~s~p~~~~-~~ 120 (293)
.+..++|++++.++ +++++|+|+.+. .+.|.||||+.|.+++.. ..|.|||+|.|.... +.
T Consensus 23 ~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~-----~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~ 97 (307)
T PLN03116 23 APYTATIVSVERIVGPKAPGETCHIVIDHGG-----NVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDG 97 (307)
T ss_pred CCEEEEEEeeEEcccCCCCCceEEEEEecCC-----CCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCC
Confidence 45589999999998 899999999643 257899999999887421 369999999985311 12
Q ss_pred CeEEEEEEEe--------------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHH
Q 022710 121 GAFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSL 186 (293)
Q Consensus 121 ~~~~~~Vk~~--------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sl 186 (293)
..++|+||.. .|.+|+||+++++||+|.++||+|++|..+. .+..+++|||||||||||++||
T Consensus 98 ~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~---~~~~~~~vlIAgGtGIaP~~sm 174 (307)
T PLN03116 98 KTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPE---EDPNATHIMVATGTGIAPFRGF 174 (307)
T ss_pred CEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCC---CCCCCcEEEEecCccHHHHHHH
Confidence 3899999975 3789999999999999999999998543221 1245789999999999999999
Q ss_pred HHHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhcc--C
Q 022710 187 IESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI--F 256 (293)
Q Consensus 187 l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~--~ 256 (293)
+++++..+. ..++.|+|++|+.++++|.++|++|... +++++++++++.+.|.+..|++++.+.+.... .
T Consensus 175 l~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~ 254 (307)
T PLN03116 175 LRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFK 254 (307)
T ss_pred HHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHHHh
Confidence 998865331 3579999999999999999999999774 68999999988777877788888866542110 0
Q ss_pred -CCCCcEEEEeCChHHHHHHHHHHH----HcCCC
Q 022710 257 -NPQGTGVVLCGQKQMAEEVTSIVL----AEGVS 285 (293)
Q Consensus 257 -~~~~~~v~vCGp~~~~~~~~~~L~----~~Gv~ 285 (293)
...+..+|+|||++|++.+.+.|. +.|++
T Consensus 255 ~~~~~~~vYiCGp~~mv~~v~~~L~~~~~~~g~~ 288 (307)
T PLN03116 255 LLDNGAHIYFCGLKGMMPGIQDTLKRVAEERGES 288 (307)
T ss_pred hhcCCcEEEEeCCHHHHHHHHHHHHHHHHHcCcc
Confidence 124578999999999987766654 44654
No 41
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=2.5e-35 Score=263.00 Aligned_cols=220 Identities=24% Similarity=0.356 Sum_probs=178.3
Q ss_pred CCceeeeEeEeeeCC-----CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-------CceeeEEecCCCCCC-CCC
Q 022710 54 TVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------GKPTFLAIASPPSFA-SAS 120 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------~~~r~ySi~s~p~~~-~~~ 120 (293)
+.+..++|++++.++ +++++++|+... ...|+|||||.|.+++. ...|+|||++.|... .++
T Consensus 6 ~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~ 80 (286)
T cd06208 6 KNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGG-----KLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDG 80 (286)
T ss_pred CCCeEEEEEeceeccCCCCCcceEEEEEeCCC-----cccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCC
Confidence 456679999999999 699999998632 25789999999987631 136999999988531 124
Q ss_pred CeEEEEEEEeC-----------CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHH
Q 022710 121 GAFEFLVKSVA-----------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189 (293)
Q Consensus 121 ~~~~~~Vk~~~-----------G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~ 189 (293)
+.++|+||..+ |.+|.||+++++||+|.+.||+|++|..+ .+..++++||||||||||+++++++
T Consensus 81 ~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIagGtGIaP~~s~l~~ 156 (286)
T cd06208 81 KTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLP----EDPNATLIMIATGTGIAPFRSFLRR 156 (286)
T ss_pred CEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCC----CCCCCCEEEEecCccHHHHHHHHHH
Confidence 79999999874 77899999999999999999999855332 1235689999999999999999999
Q ss_pred hhcc-----CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----cCC
Q 022710 190 GFSS-----KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFN 257 (293)
Q Consensus 190 ~~~~-----~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~ 257 (293)
+... +...+++|+|++|+.++++|.++|++|+.. +++++++++++++.|.+..|++++.+.+... ...
T Consensus 157 ~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~ 236 (286)
T cd06208 157 LFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLD 236 (286)
T ss_pred HHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHh
Confidence 8754 234689999999999999999999999873 6899999998877787888999887664211 122
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHc
Q 022710 258 PQGTGVVLCGQKQMAEEVTSIVLAE 282 (293)
Q Consensus 258 ~~~~~v~vCGp~~~~~~~~~~L~~~ 282 (293)
..+..+|+|||++|++.+.+.|.+.
T Consensus 237 ~~~~~vYiCGp~~m~~~v~~~L~~~ 261 (286)
T cd06208 237 KDNTHVYICGLKGMEPGVDDALTSV 261 (286)
T ss_pred cCCcEEEEeCCchHHHHHHHHHHHH
Confidence 3456899999999999999999873
No 42
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=4e-35 Score=267.31 Aligned_cols=221 Identities=23% Similarity=0.362 Sum_probs=176.4
Q ss_pred CCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---C---ceeeEEecCCCCCC-CCC
Q 022710 53 TTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---G---KPTFLAIASPPSFA-SAS 120 (293)
Q Consensus 53 ~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~---~~r~ySi~s~p~~~-~~~ 120 (293)
++....++|+.++.+.. ++++++|+.+. ...|.||||+.|..++. + ..|.|||+|.+..+ .++
T Consensus 87 ~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-----~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~ 161 (367)
T PLN03115 87 PKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-----EIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDS 161 (367)
T ss_pred cCCCeEEEEEeecccccCCCCCceEEEEEcCCC-----CCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCC
Confidence 33445678888888876 89999997543 25789999999998642 1 46899999998421 125
Q ss_pred CeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHh
Q 022710 121 GAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG 190 (293)
Q Consensus 121 ~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~ 190 (293)
+.++|+||+. .|..|+||+++++||+|.+.||+|++|.++ .+...++|||||||||||++++++++
T Consensus 162 ~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp----~~~~~~iImIAgGTGIAP~rs~L~~~ 237 (367)
T PLN03115 162 KTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMP----KDPNATIIMLATGTGIAPFRSFLWKM 237 (367)
T ss_pred CEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCC----cCCCCCEEEEeCCeeHHHHHHHHHHH
Confidence 7899999975 378999999999999999999999966443 23456899999999999999999987
Q ss_pred hccC-C----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----cCCC
Q 022710 191 FSSK-E----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNP 258 (293)
Q Consensus 191 ~~~~-~----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~ 258 (293)
+... . ...+.|+|++|+.++++|.++|++|+.. ++++++++|++++.|.+.++|+++.+.+... ....
T Consensus 238 ~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~ 317 (367)
T PLN03115 238 FFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKK 317 (367)
T ss_pred HhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhccc
Confidence 5322 1 3579999999999999999999999763 7899999999988888889999997765321 1223
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHc
Q 022710 259 QGTGVVLCGQKQMAEEVTSIVLAE 282 (293)
Q Consensus 259 ~~~~v~vCGp~~~~~~~~~~L~~~ 282 (293)
.++.+|+|||++|++.+.++|.+.
T Consensus 318 ~~~~vYiCGp~~M~~~V~~~l~~l 341 (367)
T PLN03115 318 DNTYVYMCGLKGMEKGIDDIMVSL 341 (367)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 568999999999999888887653
No 43
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=3.5e-35 Score=251.74 Aligned_cols=203 Identities=23% Similarity=0.358 Sum_probs=164.8
Q ss_pred CCeEEEEEEcCCCccccccCCCCCeEEEEEEcC--CCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhh-cCCCCC
Q 022710 69 ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD--VGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC-GLKKGD 145 (293)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~-~l~~Gd 145 (293)
.+++.++|+..++ ...|+|||||+|++++ ....|+|||++.|.. ++.++|+||.. |.+|++|+ ++++||
T Consensus 7 ~~~~~i~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~---~~~l~l~vk~~-G~~t~~l~~~l~~G~ 78 (216)
T cd06198 7 RPTTTLTLEPRGP----ALGHRAGQFAFLRFDASGWEEPHPFTISSAPDP---DGRLRFTIKAL-GDYTRRLAERLKPGT 78 (216)
T ss_pred cceEEEEEeeCCC----CCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCC---CCeEEEEEEeC-ChHHHHHHHhCCCCC
Confidence 4678888886443 1578999999999986 356799999999875 67999999987 88999998 899999
Q ss_pred EEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC-C
Q 022710 146 VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS-G 224 (293)
Q Consensus 146 ~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~-~ 224 (293)
+|.++||+|+ |.+.. ..++++|||+|+||||++++++++...+...+++++|++|+.++++|.++|++|... +
T Consensus 79 ~v~i~gP~G~-~~~~~-----~~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~ 152 (216)
T cd06198 79 RVTVEGPYGR-FTFDD-----RRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAG 152 (216)
T ss_pred EEEEECCCCC-Ccccc-----cCceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHhcC
Confidence 9999999998 76652 478999999999999999999999866666799999999999999999999999875 5
Q ss_pred cEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 225 VKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 225 i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
++++++.+. .+.+....+.+ .. ......+..+|+|||+.|++.+++.|++.|+++++|+++
T Consensus 153 ~~~~~~~~~-~~~~~~~~~~~----~~--~~~~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E 213 (216)
T cd06198 153 VVLHVIDSP-SDGRLTLEQLV----RA--LVPDLADADVWFCGPPGMADALEKGLRALGVPARRFHYE 213 (216)
T ss_pred eEEEEEeCC-CCcccchhhhh----hh--cCCCcCCCeEEEECcHHHHHHHHHHHHHcCCChHhcchh
Confidence 677665443 22222211111 11 122345689999999999999999999999999999986
No 44
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=100.00 E-value=6.9e-35 Score=259.34 Aligned_cols=203 Identities=22% Similarity=0.366 Sum_probs=168.6
Q ss_pred eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (293)
Q Consensus 59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L 138 (293)
++|++++.++++++.++|+.++. ...++||||++|+++..+.+++|||++.+.. ++.++|+||.. |.+|++|
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~----~~~~~pGQfv~l~~~~~~~~rpySias~~~~---~~~i~l~vk~~-G~~T~~L 73 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRV----AKKAKPGQFVIVRIDEKGERIPLTIADYDRE---KGTITIVFQAV-GKSTRKL 73 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchh----hccCCCCeEEEEEeCCCCCceeeEeeEEcCC---CCEEEEEEEeC-CcHHHHH
Confidence 57899999999999999986432 2468999999999986666789999997754 78999999998 9999999
Q ss_pred hcCCCCCEE-EEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710 139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (293)
Q Consensus 139 ~~l~~Gd~v-~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (293)
+++++||+| .+.||+|++|..+ ..+++++||||+||||++++++++.+.+ .+++++|++|+.++++|.++|
T Consensus 74 ~~l~~Gd~v~~i~GP~G~~~~~~------~~~~~llIaGGiGiaPl~~l~~~l~~~~--~~v~l~~g~r~~~d~~~~~el 145 (281)
T PRK06222 74 AELKEGDSILDVVGPLGKPSEIE------KFGTVVCVGGGVGIAPVYPIAKALKEAG--NKVITIIGARNKDLLILEDEM 145 (281)
T ss_pred hcCCCCCEEeeEEcCCCCCcccC------CCCeEEEEeCcCcHHHHHHHHHHHHHCC--CeEEEEEecCCHHHhhcHHHH
Confidence 999999999 7999999977543 3579999999999999999999986533 589999999999999999999
Q ss_pred HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCC-CcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ-GTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 218 ~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
++|... ++ + +. ++.|.+..|++.+.+.+. ..+.. ...+|+|||+.|++.+.+.|++.|++
T Consensus 146 ~~~~~~---~~-v-~~-~d~~~g~~G~v~~~l~~~--~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv~ 206 (281)
T PRK06222 146 KAVSDE---LY-V-TT-DDGSYGRKGFVTDVLKEL--LESGKKVDRVVAIGPVIMMKFVAELTKPYGIK 206 (281)
T ss_pred HhhCCe---EE-E-Ec-CCCCcCcccchHHHHHHH--hhcCCCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 988752 22 2 22 346777889998876552 22222 46799999999999999999999986
No 45
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=1.7e-34 Score=252.20 Aligned_cols=204 Identities=22% Similarity=0.390 Sum_probs=169.2
Q ss_pred EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---CceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
|.+++.+++++++++|+.++. ...|+||||+.|++++. ...|+|||++.|.. ++.++|+||.. |..|+|
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~---~~~l~l~v~~~-G~~s~~ 72 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEI----AAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPE---EGTITLLYKVV-GKGTRL 72 (246)
T ss_pred CcceeEecCCeEEEEEeCcch----hccCCCCcEEEEEeCCCCCCcCCCceEeeeccCC---CCEEEEEEEEE-CcchHH
Confidence 467899999999999996542 35789999999999862 35789999998854 78999999998 888999
Q ss_pred hhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710 138 LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (293)
Q Consensus 138 L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (293)
|+++++||+|.+.||+|++|.++ +..++++||||||||||++++++++.. ...++.|+|++|+.++++|+++|
T Consensus 73 l~~l~~Gd~v~i~gP~G~~~~~~-----~~~~~~vlIagGtGIaP~~s~l~~~~~--~~~~v~l~~~~r~~~d~~~~~eL 145 (246)
T cd06218 73 LSELKAGDELDVLGPLGNGFDLP-----DDDGKVLLVGGGIGIAPLLFLAKQLAE--RGIKVTVLLGFRSADDLFLVEEF 145 (246)
T ss_pred HhcCCCCCEEEEEecCCCCcCCC-----CCCCcEEEEecccCHHHHHHHHHHHHh--cCCceEEEEEccchhhhhhHHHH
Confidence 99999999999999999867654 257899999999999999999999875 34789999999999999999999
Q ss_pred HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 218 ~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
++|.. ++.+. + .+.|.+..|++++.+.+. ..+..+..+|+|||+.|++.+++.|++.|++..
T Consensus 146 ~~l~~---~~~~~-~--~~~~~~~~g~v~~~l~~~--~~~~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~ 207 (246)
T cd06218 146 EALGA---EVYVA-T--DDGSAGTKGFVTDLLKEL--LAEARPDVVYACGPEPMLKAVAELAAERGVPCQ 207 (246)
T ss_pred HhhCC---cEEEE-c--CCCCCCcceehHHHHHHH--hhccCCCEEEEECCHHHHHHHHHHHHhcCCCEE
Confidence 99853 23222 2 233556778999877663 223356899999999999999999999999854
No 46
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=100.00 E-value=4e-34 Score=266.16 Aligned_cols=220 Identities=21% Similarity=0.354 Sum_probs=173.6
Q ss_pred CCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---C---ceeeEEecCCCCCCC-CC
Q 022710 53 TTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---G---KPTFLAIASPPSFAS-AS 120 (293)
Q Consensus 53 ~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~---~~r~ySi~s~p~~~~-~~ 120 (293)
.+....++|++++.+++ ++++|+|+.++. ...|+||||++|.+++. + ..|+|||+|.+.... +.
T Consensus 139 ~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~----~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~ 214 (411)
T TIGR03224 139 VKAPITATVVGNYRLTDEDASSDIHHIVLDFGSH----PFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGY 214 (411)
T ss_pred CCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCC----cCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCC
Confidence 33456799999999954 999999997542 25789999999998742 2 368999999874210 12
Q ss_pred CeEEEEEEEeC---------CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhh
Q 022710 121 GAFEFLVKSVA---------GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF 191 (293)
Q Consensus 121 ~~~~~~Vk~~~---------G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~ 191 (293)
+.++|+||.++ |.+|+||+++++||+|.++||+|++|.++. ...+++|||||||||||+++|++++.
T Consensus 215 ~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~----~~~~~lllIagGtGIAP~~s~l~~~~ 290 (411)
T TIGR03224 215 NNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPN----HPESSIMMICTGTGSAPMRAMTERRR 290 (411)
T ss_pred CEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCC----CCCCCEEEEecccCcHHHHHHHHHHH
Confidence 57999999874 889999999999999999999999776542 23578999999999999999999986
Q ss_pred cc---CCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEE
Q 022710 192 SS---KERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVV 264 (293)
Q Consensus 192 ~~---~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~ 264 (293)
.. +...+++|+|++|+.++++|.++|++|....+++++++++.++. .+|++++.+.+... .....+..+|
T Consensus 291 ~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~~~~~~~sr~~~~---~~g~V~d~l~~~~~~v~~ll~~~~~~vY 367 (411)
T TIGR03224 291 RRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFIDINFAFSRTPEQ---PKRYVQDAIRERAADVAALLKDPNTYIY 367 (411)
T ss_pred HHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcCceEEEEeccCCcc---CcccHhhHHHHhHHHHHHHHhcCCcEEE
Confidence 42 34579999999999999999999999987777777788875442 46888887655311 1122457899
Q ss_pred EeCChHHHHHHHHHHHHcC
Q 022710 265 LCGQKQMAEEVTSIVLAEG 283 (293)
Q Consensus 265 vCGp~~~~~~~~~~L~~~G 283 (293)
+|||+.|++.+.+.|.+.+
T Consensus 368 iCGp~~M~~~v~~~L~~~~ 386 (411)
T TIGR03224 368 ICGLKGMEEGVLDAFRDVC 386 (411)
T ss_pred EECCHHHHHHHHHHHHHHH
Confidence 9999999888888877654
No 47
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=100.00 E-value=4.7e-34 Score=243.82 Aligned_cols=205 Identities=20% Similarity=0.299 Sum_probs=164.9
Q ss_pred eEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-C-cchHhhh
Q 022710 62 AEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G-STAEVLC 139 (293)
Q Consensus 62 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G-~~s~~L~ 139 (293)
++++.+++++++++|+.++... ...|+||||++|++++ ...|+|||++.|.+ .+.++|+||.++ | .+|.||+
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~pGQ~~~l~~~~-~~~r~ySi~s~~~~---~~~l~~~v~~~~~g~~~s~~l~ 74 (211)
T cd06185 1 VRIRDEAPDIRSFELEAPDGAP--LPAFEPGAHIDVHLPN-GLVRQYSLCGDPAD---RDRYRIAVLREPASRGGSRYMH 74 (211)
T ss_pred CceEEcCCCeEEEEEEeCCCCc--CCCCCCCceEEEEcCC-CCceeeeccCCCCC---CCEEEEEEEeccCCCchHHHHH
Confidence 3578999999999999765432 1379999999999986 55799999999874 699999999886 3 4799997
Q ss_pred -cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710 140 -GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (293)
Q Consensus 140 -~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (293)
.+++||+|.++||+|. |.++. ..++++|||+|+||||++++++++... ..++.++|++|+.++++|.++|+
T Consensus 75 ~~~~~Gd~v~i~gP~g~-f~~~~-----~~~~~v~ia~GtGiap~~~il~~~~~~--~~~v~l~~~~r~~~~~~~~~~l~ 146 (211)
T cd06185 75 ELLRVGDELEVSAPRNL-FPLDE-----AARRHLLIAGGIGITPILSMARALAAR--GADFELHYAGRSREDAAFLDELA 146 (211)
T ss_pred hcCCCCCEEEEcCCccC-CcCCC-----CCCcEEEEeccchHhHHHHHHHHHHhC--CCCEEEEEEeCCCcchhHHHHHh
Confidence 5899999999999997 76652 467899999999999999999998643 36899999999999999999999
Q ss_pred HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 219 ~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
++...++++. .+... ....+.+.+.. . ..+..+|+|||+.|++.+.+.|++.|++.++|+++
T Consensus 147 ~~~~~~~~~~--~~~~~-----~~~~~~~~~~~---~--~~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~~e 208 (211)
T cd06185 147 ALPGDRVHLH--FDDEG-----GRLDLAALLAA---P--PAGTHVYVCGPEGMMDAVRAAAAALGWPEARLHFE 208 (211)
T ss_pred hhcCCcEEEE--ECCCC-----CccCHHHHhcc---C--CCCCEEEEECCHHHHHHHHHHHHHcCCChhheEee
Confidence 9974455543 33221 12334444332 1 23578999999999999999999999999999986
No 48
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=100.00 E-value=4.6e-34 Score=249.88 Aligned_cols=205 Identities=21% Similarity=0.333 Sum_probs=167.1
Q ss_pred eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (293)
Q Consensus 59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L 138 (293)
++|+++++++++++.++|+.++. ...|+||||++|+++..+..++|||++.|.+ ++.++|+||.. |..|.+|
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~~----~~~~~pGQf~~l~~~~~~~~~pySi~s~~~~---~~~~~~~vk~~-G~~t~~l 72 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPLI----AKKAKPGQFVIVRADEKGERIPLTIADWDPE---KGTITIVVQVV-GKSTREL 72 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChhh----hccCCCCcEEEEEcCCCCCccceEeEEEcCC---CCEEEEEEEeC-CchHHHH
Confidence 47899999999999999996532 2478999999999876666789999998754 78999999987 8899999
Q ss_pred hcCCCCCEE-EEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710 139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (293)
Q Consensus 139 ~~l~~Gd~v-~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (293)
.++++||++ .++||+|++|..+ +.++++|||||+||||++++++++.+.+ .+++|+|++|+.++++|.++|
T Consensus 73 ~~l~~G~~v~~i~gP~G~~~~~~------~~~~~lliagG~GiaP~~~~l~~~~~~~--~~v~l~~~~r~~~~~~~~~el 144 (248)
T cd06219 73 ATLEEGDKIHDVVGPLGKPSEIE------NYGTVVFVGGGVGIAPIYPIAKALKEAG--NRVITIIGARTKDLVILEDEF 144 (248)
T ss_pred HhcCCCCEeeeeecCCCCCeecC------CCCeEEEEeCcccHHHHHHHHHHHHHcC--CeEEEEEEcCCHHHhhhHHHH
Confidence 999999999 6999999955432 4678999999999999999999986543 689999999999999999999
Q ss_pred HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCc
Q 022710 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSS 286 (293)
Q Consensus 218 ~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~ 286 (293)
++|..+ ++.. + ++.|.+..|++.+.+.+.. ........+|+|||+.|++.+.+.|++.|++.
T Consensus 145 ~~l~~~---~~~~-~--~~~~~~~~g~v~~~l~~~~-~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~ 206 (248)
T cd06219 145 RAVSDE---LIIT-T--DDGSYGEKGFVTDPLKELI-ESGEKVDLVIAIGPPIMMKAVSELTRPYGIPT 206 (248)
T ss_pred HhhcCe---EEEE-e--CCCCCCccccchHHHHHHH-hccCCccEEEEECCHHHHHHHHHHHHHcCCCE
Confidence 999642 2222 2 2345566788887665521 12234467999999999999999999999974
No 49
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=5e-34 Score=294.82 Aligned_cols=235 Identities=20% Similarity=0.337 Sum_probs=195.6
Q ss_pred hhccCCCCceeeeEeEee---eCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCe
Q 022710 48 AVRQDTTVWTPTPLAEIS---PAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGA 122 (293)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~---~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~ 122 (293)
...+++..|.+++|++++ +.+++++.++|++++.. ..+.|.|||||.|+++.. ...|+||++|.|.. .+.
T Consensus 906 ~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~--~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~---~~~ 980 (1167)
T PTZ00306 906 KYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGAL--QRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDD---LGV 980 (1167)
T ss_pred CcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcc--cccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCC---CCe
Confidence 456678899999999997 56889999999986532 335799999999998633 35699999999975 789
Q ss_pred EEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC---------CccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc
Q 022710 123 FEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR---------GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS 193 (293)
Q Consensus 123 ~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~---------~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~ 193 (293)
++|+||...|.+|+||+++++||+|+++||+|. .|.++ ++..++++||||||||||+++|+++++..
T Consensus 981 i~l~Vr~~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~----~~~~~~ivlIAGGtGItP~~sml~~~l~~ 1056 (1167)
T PTZ00306 981 ISILARGDKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFR----GHVIRKLALIAGGTGVAPMLQIIRAALKK 1056 (1167)
T ss_pred EEEEEEcCCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeec----cCCCceEEEEECCccHhHHHHHHHHHHhC
Confidence 999999756899999999999999999998772 13332 23567899999999999999999998864
Q ss_pred C---CCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeC
Q 022710 194 K---ERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCG 267 (293)
Q Consensus 194 ~---~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCG 267 (293)
+ ...+++|+|++|+.++++|+++|++|+.+ +|+++++++++++.|.+..|++++.+.++.......+..+|+||
T Consensus 1057 ~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l~~~~~~~~vyiCG 1136 (1167)
T PTZ00306 1057 PYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSALQPPSKDLLVAICG 1136 (1167)
T ss_pred cccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhcCCCCCCeEEEEeC
Confidence 3 24689999999999999999999999863 58999999988888888889998875553222233567899999
Q ss_pred ChHHHHHHHHHHHHcCCCccCeec
Q 022710 268 QKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 268 p~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
|+.|++.+.+.|++.|+++++||+
T Consensus 1137 P~~mv~~v~~~L~~~G~~~~~I~~ 1160 (1167)
T PTZ00306 1137 PPVMQRAVKADLLALGYNMELVRT 1160 (1167)
T ss_pred CHHHHHHHHHHHHHcCCCHHHeEE
Confidence 999999999999999999999986
No 50
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=100.00 E-value=1.5e-33 Score=246.87 Aligned_cols=207 Identities=20% Similarity=0.319 Sum_probs=171.0
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeCC
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVAG 132 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G 132 (293)
+|..++|+++++++++++.++|+.+ ....|+||||++|+++..+ .+|+|||++.| ++.++|+||.. |
T Consensus 3 ~~~~~~V~~~~~~t~d~~~l~l~~~-----~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~-----~~~l~l~Vk~~-G 71 (250)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGE-----KVFDMKPGQFVMVWVPGVEPLLERPISISDID-----KNEITILYRKV-G 71 (250)
T ss_pred CceEEEEEEEEEecCCeEEEEEeCc-----cccCCCCCcEEEEEeCCCCCcCceeeEEeeeC-----CCEEEEEEEEc-C
Confidence 4778999999999999999999843 2357899999999998643 47899999987 57999999987 8
Q ss_pred cchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccc
Q 022710 133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMA 212 (293)
Q Consensus 133 ~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~ 212 (293)
..|++|+++++||+|.+.||+|+.|.++. ..+++++||+|+||||++++++++...+ .+++++|++|+.++++
T Consensus 72 ~~t~~l~~l~~G~~v~i~gP~G~~f~l~~-----~~~~~vlIagG~GiaP~~s~l~~~~~~~--~~v~l~~~~r~~~d~~ 144 (250)
T PRK00054 72 EGTKKLSKLKEGDELDIRGPLGNGFDLEE-----IGGKVLLVGGGIGVAPLYELAKELKKKG--VEVTTVLGARTKDEVI 144 (250)
T ss_pred hHHHHHhcCCCCCEEEEEcccCCCCCCCC-----CCCeEEEEeccccHHHHHHHHHHHHHcC--CcEEEEEEcCCHHHhh
Confidence 99999999999999999999998786642 5679999999999999999999986433 5799999999999999
Q ss_pred cHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710 213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 213 ~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
|.++|++++. +.+ .+ ++.|.+..|++++.+.+. . .....+|+|||++|++.+.+.|++.|+ +..|..
T Consensus 145 ~~~el~~~~~----~~~-~~--~~~~~~~~g~v~~~l~~~--~--~~~~~vyvCGp~~m~~~v~~~l~~~Gv-~~~~~~ 211 (250)
T PRK00054 145 FEEEFAKVGD----VYV-TT--DDGSYGFKGFVTDVLDEL--D--SEYDAIYSCGPEIMMKKVVEILKEKKV-PAYVSL 211 (250)
T ss_pred hHHHHHhcCC----EEE-Ee--cCCCCCcccchhHhHhhh--c--cCCCEEEEeCCHHHHHHHHHHHHHcCC-cEEEEE
Confidence 9999998542 211 12 344556778898877652 1 344689999999999999999999999 444443
No 51
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=100.00 E-value=1.8e-33 Score=245.36 Aligned_cols=206 Identities=20% Similarity=0.216 Sum_probs=165.1
Q ss_pred EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC--CCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD--VGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (293)
Q Consensus 61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L 138 (293)
|++++.+++++++++|+.++. ...|+||||++|+++. ....|+|||++.+.. .+.++|+||.. |.+|+||
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~---~~~l~l~i~~~-G~~t~~l 72 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLA----ARLFRPGQFVFLRNFESPGLERIPLSLAGVDPE---EGTISLLVEIR-GPKTKLI 72 (243)
T ss_pred CceEEEecCCEEEEEEEccch----hhcCCCCCeEEEecCCCCCceeeeeEeeecCCC---CCEEEEEEEEc-CchHHHH
Confidence 467889999999999996532 2578999999999973 346799999999865 78999999987 8999999
Q ss_pred hcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710 139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (293)
Q Consensus 139 ~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (293)
+++++||+|.+.||+|++|... +..++++||||||||||++++++++... ..+++++|++|+.++++|.++|+
T Consensus 73 ~~~~~G~~l~i~gP~G~~~~~~-----~~~~~~lliagGtGiap~~~~l~~~~~~--~~~v~l~~~~r~~~d~~~~~el~ 145 (243)
T cd06192 73 AELKPGEKLDVMGPLGNGFEGP-----KKGGTVLLVAGGIGLAPLLPIAKKLAAN--GNKVTVLAGAKKAKEEFLDEYFE 145 (243)
T ss_pred HhCCCCCEEEEEccCCCCCccC-----CCCCEEEEEeCcccHHHHHHHHHHHHHC--CCeEEEEEecCcHHHHHHHHHHH
Confidence 9999999999999999855332 2467999999999999999999998754 37899999999999999999999
Q ss_pred HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 219 ~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
++. ..+ .+.+ ++.|.+..|++.+.... ........+|+|||+.|++.+++.|++.| +..++++
T Consensus 146 ~~~---~~~-~~~~--~~~~~~~~g~v~~~~~~---~~~~~~~~v~icGp~~mv~~~~~~l~~~g-~~~~~~~ 208 (243)
T cd06192 146 LPA---DVE-IWTT--DDGELGLEGKVTDSDKP---IPLEDVDRIIVAGSDIMMKAVVEALDEWL-QLIKASV 208 (243)
T ss_pred hhc---CeE-EEEe--cCCCCccceeechhhhh---hhcccCCEEEEECCHHHHHHHHHHHHhhc-CCceEEE
Confidence 883 222 2223 24456677777664221 12223468999999999999999999988 6666654
No 52
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=3.3e-33 Score=244.43 Aligned_cols=209 Identities=24% Similarity=0.464 Sum_probs=177.9
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-CcchH
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTAE 136 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s~ 136 (293)
.++|.+++.++++++.++|+.+... ..++|||||+|++|+ ...++||+++.+.. ++.++|.|+... |.+|.
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~----~~~~pGQfv~l~~~~-~~~~P~si~~~~~~---~g~~~l~i~~~~~G~~T~ 80 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVA----LTFKPGQFVMLRVPG-GVRRPYSLASAPDD---KGELELHIRVYEVGKVTK 80 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccc----cccCCCcEEEEEeCC-CcEEEeeeccCCCc---CCcEEEEEEEEeCChHHH
Confidence 5899999999999999999976432 578999999999998 77899999999986 787777777654 79999
Q ss_pred hhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 022710 137 VLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK 216 (293)
Q Consensus 137 ~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~ 216 (293)
++..+++||.|.++||+|++|..+. ..+++++||||||++|++++++++...++..+|+++|++++.+++++.++
T Consensus 81 ~i~~~k~gd~i~v~GP~G~~~~~~~-----~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~e 155 (252)
T COG0543 81 YIFGLKEGDKIRVRGPLGNGFLREK-----IGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDE 155 (252)
T ss_pred HHhhccCCCEEEEEcCCCCCccccc-----cCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHH
Confidence 9999999999999999999886652 45559999999999999999999986456689999999999999999999
Q ss_pred HHHHHhCCcEEEEEEecCCCCCCcccccc-chHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 217 FKEWESSGVKIVPVLSQPDGNWSGETGYV-QAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 217 l~~l~~~~i~~~~~~s~~~~~~~~~~g~v-~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
|++|..+ +++++.+ ++|.|.+|++ .+.+.+ ........+|+|||+.|++.+.+.+.+.|+...
T Consensus 156 l~~~~~~--~~~~~~~---~~~~G~~G~v~~~~~~~---~~~~~~~~v~~cGp~~M~~~v~~~~~~~g~~~~ 219 (252)
T COG0543 156 LEELAEK--EVHPVTD---DGWKGRKGFVTTDVLKE---LLDLEVDDVYICGPPAMVKAVREKLKEYGVPIS 219 (252)
T ss_pred HHHhhcC--cEEEEEC---CCCCccCcceeHHHHhh---hccccCCEEEEECCHHHHHHHHHHHHhcCCchh
Confidence 9999875 5555544 7888999999 554444 222256899999999999999999999997554
No 53
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=3.8e-33 Score=241.89 Aligned_cols=198 Identities=22% Similarity=0.356 Sum_probs=164.1
Q ss_pred eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (293)
Q Consensus 59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L 138 (293)
.+|.++++++++++.++|+.+ ..|+||||++|++++.. .++|||++.| +.++|+||.. |.+|+||
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~-------~~~~pGQ~v~l~~~~~~-~~~~Si~s~~------~~l~~~v~~~-G~~s~~L 65 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD-------FDFKPGQFVMVWVPGVD-EIPMSLSYID------GPNSITVKKV-GEATSAL 65 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC-------CCCCCCceEEEEeCCCC-cceeEEecCC------CeEEEEEEec-ChHHHHH
Confidence 368999999999999999742 36899999999997644 4789999987 5799999987 9999999
Q ss_pred hcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710 139 CGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (293)
Q Consensus 139 ~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (293)
+++++||++.+.||+|++|.++ .++++|||+|+||||++++++++... .+++++|++|+.++++|+++|+
T Consensus 66 ~~l~~Gd~v~i~gP~G~~f~~~-------~~~~vliAgGtGitP~~sil~~~~~~---~~i~l~~~~r~~~d~~~~~eL~ 135 (233)
T cd06220 66 HDLKEGDKLGIRGPYGNGFELV-------GGKVLLIGGGIGIAPLAPLAERLKKA---ADVTVLLGARTKEELLFLDRLR 135 (233)
T ss_pred HhcCCCCEEEEECcCCCCccCC-------CCeEEEEecCcChHHHHHHHHHHHhc---CCEEEEEecCChHHChhHHHHh
Confidence 9999999999999999867542 56899999999999999999998753 7899999999999999999999
Q ss_pred HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 219 EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 219 ~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
++. ++.++. . +.|.+..|++++.+.+. . ......+|+|||+.|++.+.+.|++.|+ +.+|+.+
T Consensus 136 ~~~----~~~~~~-~--~~~~~~~g~~~~~l~~~--~-~~~~~~vyicGp~~m~~~~~~~L~~~g~-~~~i~~e 198 (233)
T cd06220 136 KSD----ELIVTT-D--DGSYGFKGFVTDLLKEL--D-LEEYDAIYVCGPEIMMYKVLEILDERGV-RAQFSLE 198 (233)
T ss_pred hCC----cEEEEE-e--CCCCcccceehHHHhhh--c-ccCCCEEEEECCHHHHHHHHHHHHhcCC-cEEEEec
Confidence 832 222222 1 24556678898866552 2 2334689999999999999999999999 7888765
No 54
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=100.00 E-value=1.5e-32 Score=245.23 Aligned_cols=212 Identities=21% Similarity=0.361 Sum_probs=167.8
Q ss_pred CCCceeeeEeEeeeCC----CCeEEEEEEcCCCc--cccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEE
Q 022710 53 TTVWTPTPLAEISPAA----ESLFHVSIDISDAP--DIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFL 126 (293)
Q Consensus 53 ~~~~~~~~v~~~~~~~----~~~~~l~l~~~~~~--~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~ 126 (293)
...+.+++|++++.++ ++++.|+|+.++.. +.....|+|||||.|..++....|+|||++.|. ++.++|+
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~~~~R~YSias~p~----~g~l~l~ 117 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGSDVPRFYSLASSSS----DGFLEIC 117 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCCCCCceEecCCCCC----CCeEEEE
Confidence 4468899999999999 59999999976520 112357899999999977666789999999985 7899999
Q ss_pred EEEeC-CcchHhhhcCCCCCEEEEEe-ecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEc
Q 022710 127 VKSVA-GSTAEVLCGLKKGDVVEISQ-VMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYG 204 (293)
Q Consensus 127 Vk~~~-G~~s~~L~~l~~Gd~v~v~g-P~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~ 204 (293)
||.++ |.+|.||+++++||+|.+.+ |.|. |.+. +..++++||||||||||+++++++.. ...+++|+|+
T Consensus 118 Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~-F~~~-----~~~~~lvlIAgGtGIaP~~s~l~~~~---~~~~v~L~~g 188 (289)
T cd06201 118 VRKHPGGLCSGYLHGLKPGDTIKAFIRPNPS-FRPA-----KGAAPVILIGAGTGIAPLAGFIRANA---ARRPMHLYWG 188 (289)
T ss_pred EEeCCCccchhhHhhCCCcCEEEEEeccCCC-ccCC-----CCCCCEEEEecCcCHHHHHHHHHhhh---ccCCEEEEEE
Confidence 99864 78999999999999999985 6665 7553 25678999999999999999999862 3468999999
Q ss_pred cCCcc-ccccHHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhc-c--CCCCCcEEEEeCChHHHHHHHHH
Q 022710 205 ARNLK-RMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK-I--FNPQGTGVVLCGQKQMAEEVTSI 278 (293)
Q Consensus 205 ~r~~~-~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~-~--~~~~~~~v~vCGp~~~~~~~~~~ 278 (293)
+|+.+ +++|+++|++|..+ +++++.+++++. ..|++++.+..... . ....+..+|+|||+.|++.+.+.
T Consensus 189 ~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-----~~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~M~~~v~~~ 263 (289)
T cd06201 189 GRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-----DGAYVQDRLRADAERLRRLIEDGAQIMVCGSRAMAQGVAAV 263 (289)
T ss_pred ecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-----CcccchhHHHHhHHHHHHHHHCCcEEEEECCHHHHHHHHHH
Confidence 99985 89999999999865 567777777653 25677665433110 0 01245789999999999999998
Q ss_pred HHHc
Q 022710 279 VLAE 282 (293)
Q Consensus 279 L~~~ 282 (293)
|.+.
T Consensus 264 L~~i 267 (289)
T cd06201 264 LEEI 267 (289)
T ss_pred HHHH
Confidence 8763
No 55
>PRK05802 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-32 Score=246.07 Aligned_cols=215 Identities=11% Similarity=0.164 Sum_probs=165.3
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA 131 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~ 131 (293)
..+.+++|++++.++++++.++|+.+++ +....++|||||+|++++.+ ..|+|||++.+.+ ++.++|+||..
T Consensus 62 ~~~~~~~I~~~~~~t~dv~~l~l~~p~~--~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~---~g~l~l~ik~~- 135 (320)
T PRK05802 62 RKTYECKIIKKENIEDNLIILTLKVPHK--LARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTE---ENIIKVAIEIR- 135 (320)
T ss_pred cccEeEEEEEEEEecCCEEEEEEECCch--hhhccCCCCceEEEEEcCCCCEeEEeeEecccCCC---CCEEEEEEEec-
Confidence 3466899999999999999999987542 12234799999999997543 3589999999865 78999999996
Q ss_pred CcchHhhhcCCCCCEEEEEeecCCC-ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710 132 GSTAEVLCGLKKGDVVEISQVMGRG-FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (293)
Q Consensus 132 G~~s~~L~~l~~Gd~v~v~gP~G~~-f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~ 210 (293)
|.+|++|+++++||+|.++||+|++ |.+..+ ++...+++++||||+||||++++++++.+++ .+++++|++|+.++
T Consensus 136 G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~-~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~--~~v~li~g~r~~~~ 212 (320)
T PRK05802 136 GVKTKKIAKLNKGDEILLRGPYWNGILGLKNI-KSTKNGKSLVIARGIGQAPGVPVIKKLYSNG--NKIIVIIDKGPFKN 212 (320)
T ss_pred ChhHHHHhcCCCCCEEEEeCCCCcCcCCcccc-cccCCCeEEEEEeEEeHHHHHHHHHHHHHcC--CcEEEEEeCCCHHH
Confidence 9999999999999999999999887 444311 1124568999999999999999999997654 58999999999999
Q ss_pred cccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHH--cCCC
Q 022710 211 MAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLA--EGVS 285 (293)
Q Consensus 211 ~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~--~Gv~ 285 (293)
++|.++|++|..+....+. ......+ .+.+|.+.+.+.+ .....+|+|||+.|++.+.+.|.+ .|++
T Consensus 213 ~~~~~el~~~~~~~~~~~~-~ddG~~~-~~~~g~v~~~l~~------~~~~~vy~CGP~~M~k~v~~~l~~~~~~i~ 281 (320)
T PRK05802 213 NFIKEYLELYNIEIIELNL-LDDGELS-EEGKDILKEIIKK------EDINLIHCGGSDILHYKIIEYLDKLNEKIK 281 (320)
T ss_pred HHHHHHHHHhhCceEEEEe-cccCCCC-ccccchHHHHhcC------CCCCEEEEECCHHHHHHHHHHHhhhcCCce
Confidence 9999999998653222111 1111101 1234566665543 123679999999999999999988 5653
No 56
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=100.00 E-value=2.5e-32 Score=241.06 Aligned_cols=200 Identities=23% Similarity=0.448 Sum_probs=161.3
Q ss_pred CeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC----------CcchHhhh
Q 022710 70 SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLC 139 (293)
Q Consensus 70 ~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~----------G~~s~~L~ 139 (293)
++++++|+.++.. ...|+||||+.|.+++...+|+|||++.|.. ..+.++|+||..+ |.+|.+|+
T Consensus 16 ~v~~l~l~~~~~~---~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~--~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~ 90 (267)
T cd06182 16 STRHLEFDLSGNS---VLKYQPGDHLGVIPPNPLQPRYYSIASSPDV--DPGEVHLCVRVVSYEAPAGRIRKGVCSNFLA 90 (267)
T ss_pred ceEEEEEecCCCC---cCccCCCCEEEEecCCCCCCeeEeecCCCCC--CCCEEEEEEEEEEEecCCCCeeccchhHHHh
Confidence 7999999976411 2578999999999987667899999999852 1489999999864 78899999
Q ss_pred cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhc----cCCCCcEEEEEccCCc-cccccH
Q 022710 140 GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS----SKERSDVRLYYGARNL-KRMAYQ 214 (293)
Q Consensus 140 ~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~----~~~~~~v~l~~~~r~~-~~~~~~ 214 (293)
++++||.|.+.||+|..|.++. +..+++||||+||||||+++++++++. .....++.|+|++|+. ++++|.
T Consensus 91 ~lk~Gd~v~v~~p~G~~f~l~~----~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~ 166 (267)
T cd06182 91 GLQLGAKVTVFIRPAPSFRLPK----DPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYR 166 (267)
T ss_pred hCCCCCEEEEEEecCCcccCCC----CCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHH
Confidence 9999999999999995487753 346789999999999999999999985 2345789999999999 899999
Q ss_pred HHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEEEeCChH-HHHHHHHHHHHc
Q 022710 215 DKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEEVTSIVLAE 282 (293)
Q Consensus 215 ~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~~-~~~~~~~~L~~~ 282 (293)
++|++|... +++++.+++++... ..+++++.+..... ... .+..||+|||+. |++.+.+.|++.
T Consensus 167 del~~~~~~~~~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~-~~~~vyvCGp~~~m~~~v~~~L~~~ 237 (267)
T cd06182 167 EELQEALKDGALTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLN-EGAHIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred HHHHHHHhCCCcceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHh-cCCEEEEECCcccchHHHHHHHHHH
Confidence 999999875 67888888875432 34677665433111 111 345899999999 999999999876
No 57
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=100.00 E-value=7.2e-32 Score=235.48 Aligned_cols=200 Identities=21% Similarity=0.364 Sum_probs=156.4
Q ss_pred eeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC------CcchHh
Q 022710 64 ISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA------GSTAEV 137 (293)
Q Consensus 64 ~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~------G~~s~~ 137 (293)
.+..++++++++|+.++. ...|+||||++|.+++...+|+|||+|.|. ++.++|+||..+ |..|+|
T Consensus 11 ~~~~~~~v~~l~l~~~~~----~~~f~pGQ~v~l~~~~~~~~R~YSIas~p~----~~~l~l~Vk~~~~~~~~~G~~S~~ 82 (245)
T cd06200 11 PGSQGAPLWRLRLTPPDA----GAQWQAGDIAEIGPRHPLPHREYSIASLPA----DGALELLVRQVRHADGGLGLGSGW 82 (245)
T ss_pred CCCCCCceEEEEEecCCC----CCCccCCcEEEecCCCCCCCcceEeccCCC----CCEEEEEEEEeccCCCCCeeechh
Confidence 333344799999987532 257899999999987545679999999986 678999999874 458999
Q ss_pred hhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc-ccccHH
Q 022710 138 LCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK-RMAYQD 215 (293)
Q Consensus 138 L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~-~~~~~~ 215 (293)
|++ +++||+|.+.||.|..|.++ +..+++|||||||||||++++++++...+ ..++.++|++|+.+ +++|.+
T Consensus 83 L~~~~~~Gd~v~i~gp~gg~F~~~-----~~~~~~vlIAgGtGIaP~~s~l~~~~~~~-~~~~~l~~g~r~~~~d~~~~~ 156 (245)
T cd06200 83 LTRHAPIGASVALRLRENPGFHLP-----DDGRPLILIGNGTGLAGLRSHLRARARAG-RHRNWLLFGERQAAHDFFCRE 156 (245)
T ss_pred hhhCCCCCCEEEEEecCCCcccCC-----CCCCCEEEEecCcChHHHHHHHHHHHhcc-CCCeEEEEecCCccccHhHHH
Confidence 986 69999999999877668654 24578999999999999999999987543 35789999999985 899999
Q ss_pred HHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccC---CCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710 216 KFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEEVTSIVLA 281 (293)
Q Consensus 216 ~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~v~vCGp~-~~~~~~~~~L~~ 281 (293)
+|++|... ++++++++++++. ..+++++.+.+..... ...+..+|+|||+ +|++.+.+.|.+
T Consensus 157 el~~~~~~~~~~~~~~~~s~~~~----~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~ 224 (245)
T cd06200 157 ELEAWQAAGHLARLDLAFSRDQA----QKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDE 224 (245)
T ss_pred HHHHHHHCCCcceEEEEEccCCC----CCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHH
Confidence 99999875 4677777777542 3577777665421110 0135789999999 999999998864
No 58
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=100.00 E-value=8.4e-32 Score=231.39 Aligned_cols=192 Identities=19% Similarity=0.290 Sum_probs=150.1
Q ss_pred EeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------------------CceeeEEecCCCCCCCCCCeEE
Q 022710 63 EISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------------------GKPTFLAIASPPSFASASGAFE 124 (293)
Q Consensus 63 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------------------~~~r~ySi~s~p~~~~~~~~~~ 124 (293)
+++.+++++.+++|..+++.. ...|+|||||.|.++.. ...|.|||+|.|....+.+.++
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~ 79 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDV--VGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFE 79 (220)
T ss_pred cceecccceeEEEEEecCCcc--ccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEE
Confidence 467889999999999865432 25889999999998742 3468899999996411127999
Q ss_pred EEEEEeCCcchHhhhcCC--C---CCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC-CCCc
Q 022710 125 FLVKSVAGSTAEVLCGLK--K---GDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-ERSD 198 (293)
Q Consensus 125 ~~Vk~~~G~~s~~L~~l~--~---Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-~~~~ 198 (293)
|+||.. |.+|++|++.. . |++|.+.||+|. |.+... +.+..++++|||||+||||++++++++.... ...+
T Consensus 80 l~vk~~-G~~T~~L~~~~~~~~~~G~~v~v~gP~G~-f~~~~~-~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~ 156 (220)
T cd06197 80 ITVRKK-GPVTGFLFQVARRLREQGLEVPVLGVGGE-FTLSLP-GEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWD 156 (220)
T ss_pred EEEEeC-CCCCHHHHHhhhcccCCCceEEEEecCCc-ccCCcc-cccCCceEEEEecccchhhHHHHHHHHHhcccCCCc
Confidence 999998 99999998743 3 999999999997 766521 1135678999999999999999999987543 3578
Q ss_pred EEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHH
Q 022710 199 VRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSI 278 (293)
Q Consensus 199 v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~ 278 (293)
++|+|++|+.++++|.++|.++.+..+....+.+ ..+|+|||++|++.+.+.
T Consensus 157 v~l~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~----------------------------~~v~~CGP~~m~~~~~~~ 208 (220)
T cd06197 157 ITLLWSLREDDLPLVMDTLVRFPGLPVSTTLFIT----------------------------SEVYLCGPPALEKAVLEW 208 (220)
T ss_pred EEEEEEecchhhHHHHHHHHhccCCceEEEEEEe----------------------------ccEEEECcHHHHHHHHHH
Confidence 9999999999999999999887642222211100 069999999999999999
Q ss_pred HHHcCCCccCeecc
Q 022710 279 VLAEGVSSEKILKN 292 (293)
Q Consensus 279 L~~~Gv~~~~I~~~ 292 (293)
+++. +||++
T Consensus 209 ~~~~-----~~~~e 217 (220)
T cd06197 209 LEGK-----KVHRE 217 (220)
T ss_pred hhhc-----eeEec
Confidence 9875 66665
No 59
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-32 Score=237.27 Aligned_cols=214 Identities=20% Similarity=0.313 Sum_probs=178.0
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC---ceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG---KPTFLAIASPPSFASASGAFEFLVKSVA 131 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~r~ySi~s~p~~~~~~~~~~~~Vk~~~ 131 (293)
....++|+..+..+.+++.++.....+ ..+++|||.+|+++..+ .+++|||+++.. ..+++|.||.-
T Consensus 214 ~~y~~~vt~~~r~~~~t~eit~~l~~~-----~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~----~sel~FsIK~L- 283 (438)
T COG4097 214 FPYLGKVTAPQRGNVDTLEITIGLQGP-----WLYQAGQFAFLKIEIEEFRMRPHPFTIACSHE----GSELRFSIKAL- 283 (438)
T ss_pred cccceEEechhhcCcchheeecccCCc-----ccccCCceEEEEeccccccCCCCCeeeeeCCC----CceEEEEehhh-
Confidence 345788999999999999998887654 23799999999999764 378999999986 55899999988
Q ss_pred CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710 132 GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (293)
Q Consensus 132 G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~ 210 (293)
|..|+.|.+ +++|+++++.||||+ |+.++ ...+.|+||||+||||++|+++.+...+....|.|+||+|+.++
T Consensus 284 GD~Tk~l~dnLk~G~k~~vdGPYG~-F~~~~-----g~~~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~ 357 (438)
T COG4097 284 GDFTKTLKDNLKVGTKLEVDGPYGK-FDFER-----GLNTQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEE 357 (438)
T ss_pred hhhhHHHHHhccCCceEEEecCcce-eeccc-----CCcccEEEecCcCcchHHHHHHhhcccccCCceEEEEEecCCch
Confidence 999999985 999999999999998 88875 33449999999999999999999987667789999999999999
Q ss_pred cccHHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccC
Q 022710 211 MAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEK 288 (293)
Q Consensus 211 ~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~ 288 (293)
..|.+||++++++ ++.+|...|+ .+|+++....+.. ...+....+|+|||.+|++.+++.|++.+++-.+
T Consensus 358 ~~y~~eLr~~~qkl~~~~lHiiDSs-------~~g~l~~e~ler~-~~~~~~~sv~fCGP~~m~dsL~r~l~~~~~~i~~ 429 (438)
T COG4097 358 ALYAEELRALAQKLPNVVLHIIDSS-------KDGYLDQEDLERY-PDRPRTRSVFFCGPIKMMDSLRRDLKKQNVPITN 429 (438)
T ss_pred hHHHHHHHHHHhcCCCeEEEEecCC-------CCCccCHHHhhcc-ccccCcceEEEEcCHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999985 6676664333 3567876655521 1223344899999999999999999999999877
Q ss_pred eecc
Q 022710 289 ILKN 292 (293)
Q Consensus 289 I~~~ 292 (293)
+|.|
T Consensus 430 ~h~E 433 (438)
T COG4097 430 FHYE 433 (438)
T ss_pred HHHH
Confidence 7754
No 60
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.98 E-value=3e-31 Score=230.29 Aligned_cols=207 Identities=12% Similarity=0.096 Sum_probs=159.1
Q ss_pred EeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---------------------CceeeEEecCCCCCCCC
Q 022710 61 LAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---------------------GKPTFLAIASPPSFASA 119 (293)
Q Consensus 61 v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---------------------~~~r~ySi~s~p~~~~~ 119 (293)
|++++++++++++|+|+.++... ...|.||||+.|.++.. ...|.|||++.+..
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~--- 75 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAG--FPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE--- 75 (235)
T ss_pred CceeEecCCCEEEEEEecCcccc--CCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC---
Confidence 56889999999999999764311 24689999999999753 24689999998754
Q ss_pred CCeEEEEEEEeC--CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCC
Q 022710 120 SGAFEFLVKSVA--GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERS 197 (293)
Q Consensus 120 ~~~~~~~Vk~~~--G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~ 197 (293)
++.++|.||.++ |..|+|++++++||+|.+.||+|. |.+. ...+++||||||+||+|+++|++++.. ..
T Consensus 76 ~~~l~~~v~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~-~~~~-----~~~~~~vlia~GtGi~p~~~il~~~~~---~~ 146 (235)
T cd06193 76 AGELDIDFVLHGDEGPASRWAASAQPGDTLGIAGPGGS-FLPP-----PDADWYLLAGDETALPAIAAILEELPA---DA 146 (235)
T ss_pred CCEEEEEEEeCCCCCchHHHHhhCCCCCEEEEECCCCC-CCCC-----CCcceEEEEeccchHHHHHHHHHhCCC---CC
Confidence 799999998775 689999999999999999999998 4333 146789999999999999999999853 26
Q ss_pred cEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHH
Q 022710 198 DVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTS 277 (293)
Q Consensus 198 ~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~ 277 (293)
+++++|++++.+++++.+++ .+++++++.+.+... +..+.. .... ......+..+|+|||++|++.+++
T Consensus 147 ~~~~~~~~~~~~d~~~l~~~-----~~~~~~~~~~~~~~~--~~~~~~---~~~~-~~~~~~~~~vyicGp~~mv~~v~~ 215 (235)
T cd06193 147 RGTALIEVPDAADEQPLPAP-----AGVEVTWLHRGGAEA--GELALL---AVRA-LAPPAGDGYVWIAGEAGAVRALRR 215 (235)
T ss_pred eEEEEEEECCHHHccccCCC-----CCcEEEEEeCCCCCc--chhHHH---HHhc-ccCCCCCeEEEEEccHHHHHHHHH
Confidence 89999999999776544432 267777765543321 111211 1111 122335678999999999999999
Q ss_pred HHHH-cCCCccCeecc
Q 022710 278 IVLA-EGVSSEKILKN 292 (293)
Q Consensus 278 ~L~~-~Gv~~~~I~~~ 292 (293)
.|++ .|+++++||++
T Consensus 216 ~l~~~~g~~~~~i~~~ 231 (235)
T cd06193 216 HLREERGVPRAQVYAS 231 (235)
T ss_pred HHHHccCCCHHHEEEE
Confidence 9987 59999999974
No 61
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.97 E-value=2.1e-30 Score=258.83 Aligned_cols=203 Identities=21% Similarity=0.367 Sum_probs=169.6
Q ss_pred eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (293)
Q Consensus 59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L 138 (293)
++|++++.++++++.++|+.+.. ...++||||++|++++.+.+++|||++.+.. ++.++|+||.. |.+|.+|
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~----~~~~~pGQFv~l~~~~~~~~rp~Si~~~~~~---~g~i~~~vk~v-G~~T~~L 73 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLI----AKSRKPGQFVIVRVGEKGERIPLTIADADPE---KGTITLVIQEV-GLSTTKL 73 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCch----hccCCCCeeEEEEeCCCCCeeEEEeeeeCCC---CCEEEEEEEEc-CchHHHH
Confidence 47899999999999999985421 2468999999999987677789999998865 78999999998 9999999
Q ss_pred hcCCCCCEE-EEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH
Q 022710 139 CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF 217 (293)
Q Consensus 139 ~~l~~Gd~v-~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l 217 (293)
+++++||+| .+.||+|++|..+ ..++++|||||+||||++++++++.+.+ .+++++|++|+.++++|.++|
T Consensus 74 ~~l~~Gd~v~~v~GP~G~~~~~~------~~~~~llvaGG~GiaPl~~l~~~l~~~~--~~v~l~~g~r~~~~l~~~~el 145 (752)
T PRK12778 74 CELNEGDYITDVVGPLGNPSEIE------NYGTVVCAGGGVGVAPMLPIVKALKAAG--NRVITILGGRSKELIILEDEM 145 (752)
T ss_pred hcCCCCCEeCeEeCCCCCCccCC------CCCeEEEEECCEeHHHHHHHHHHHHHCC--CeEEEEeccCCHHHhhhHHHH
Confidence 999999999 7999999977543 3478999999999999999999987544 589999999999999999999
Q ss_pred HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCC-CCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 218 KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-QGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 218 ~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
++|..+ +++. + +++|.+..|++.+.+.+. .... ....+|+|||+.|++.+.+.|++.|++
T Consensus 146 ~~~~~~---~~~~-t--~dg~~g~~G~v~~~l~~~--~~~~~~~~~vy~CGP~~M~~~v~~~l~~~gv~ 206 (752)
T PRK12778 146 RESSDE---VIIM-T--DDGSYGRKGLVTDGLEEV--IKRETKVDKVFAIGPAIMMKFVCLLTKKYGIP 206 (752)
T ss_pred HhhcCe---EEEE-E--CCCCCCCcccHHHHHHHH--hhcCCCCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence 998652 2221 2 456778889998876552 2221 235799999999999999999999987
No 62
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.97 E-value=6.4e-29 Score=251.03 Aligned_cols=215 Identities=17% Similarity=0.290 Sum_probs=170.3
Q ss_pred ceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcch
Q 022710 56 WTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTA 135 (293)
Q Consensus 56 ~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s 135 (293)
+..++|++++.++++++.++|+.++. ...++||||++|+++..+..++|||++.+.. ++.++|+||.+ |..|
T Consensus 648 ~~~~~I~~~~~lt~dv~~~~l~~p~~----~~~~~PGQFv~L~~~~~ge~rP~SIas~~~~---~g~i~l~Vk~v-G~~T 719 (944)
T PRK12779 648 QIPQTIVGKVQLAGGIVEFTVRAPMV----ARSAQAGQFVRVLPWEKGELIPLTLADWDAE---KGTIDLVVQGM-GTSS 719 (944)
T ss_pred ceEEEEEEEEEecCCEEEEEEeCCCc----cccCCCCceEEEEeCCCCCEEeEEccCCCCC---CCEEEEEEEee-ccHH
Confidence 66899999999999999999986432 2468999999999876667789999998764 78999999988 8888
Q ss_pred HhhhcCCCCCEEE-EEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710 136 EVLCGLKKGDVVE-ISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (293)
Q Consensus 136 ~~L~~l~~Gd~v~-v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (293)
.+|+++++||++. |.||+|++|.++. ....+++||||||+||||++++++++.+.+ .+++++|++|+.+++++.
T Consensus 720 ~~L~~lk~Gd~l~~I~GPlG~~f~~~~---~~~~~~vllIAGGiGIAPl~sl~r~l~~~g--~~V~li~G~Rs~edl~~~ 794 (944)
T PRK12779 720 LEINRMAIGDAFSGIAGPLGRASELHR---YEGNQTVVFCAGGVGLPPVYPIMRAHLRLG--NHVTLISGFRAKEFLFWT 794 (944)
T ss_pred HHHhcCCCcCEEeeeecCCCCCcCCcc---ccCCCcEEEEEccEeHHHHHHHHHHHHHCC--CCEEEEEEeCCHHHhhhH
Confidence 8999999999995 9999999775542 112468999999999999999999987543 689999999999999988
Q ss_pred HHHH---HHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhcc-CC-C--CCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710 215 DKFK---EWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKI-FN-P--QGTGVVLCGQKQMAEEVTSIVLAEGV 284 (293)
Q Consensus 215 ~~l~---~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~-~~-~--~~~~v~vCGp~~~~~~~~~~L~~~Gv 284 (293)
++++ +|+.. .+++++. . +++|.+..|++.+.+.+.... .+ . ....+|+|||+.|++.+.+.|++.|+
T Consensus 795 del~~L~~la~~~~~~~~v~~t--t-ddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~~Mmkav~~~l~~~Gv 871 (944)
T PRK12779 795 GDDERVGKLKAEFGDQLDVIYT--T-NDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPPLMMRAVSDLTKPYGV 871 (944)
T ss_pred HHHHHHHHHHHHcCCCeEEEEE--e-cCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 7654 45442 2344433 2 345677889998876542111 10 1 13679999999999999999999999
Q ss_pred Cc
Q 022710 285 SS 286 (293)
Q Consensus 285 ~~ 286 (293)
+.
T Consensus 872 ~~ 873 (944)
T PRK12779 872 KT 873 (944)
T ss_pred Ce
Confidence 86
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=249.59 Aligned_cols=202 Identities=19% Similarity=0.308 Sum_probs=167.2
Q ss_pred eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (293)
Q Consensus 59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L 138 (293)
++|++++.++++++.++|+.++. ...++|||||+|++++.+.+++|||++.+.. .+.++|.||.. |.+|+||
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~----a~~~~PGQFV~l~~~~~~errplSIa~~~~~---~g~i~l~vk~v-G~~T~~L 73 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDV----AASAEPGHFVMLRLYEGAERIPLTVADFDRK---KGTITMVVQAL-GKTTREM 73 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCc----ccCCCCCeeEEEEeCCCCeeEEEEecCcCCC---CCEEEEEEEec-CcHHHHH
Confidence 46899999999999999986542 3578999999999977667789999987754 78999999997 9999998
Q ss_pred -hcCCCCCEE-EEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHH
Q 022710 139 -CGLKKGDVV-EISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDK 216 (293)
Q Consensus 139 -~~l~~Gd~v-~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~ 216 (293)
.++++||.| .+.||+|++|..+ ..+++||||||+||||++++++++.+.+ .+++++|++|+.++++|.++
T Consensus 74 ~~~lk~Gd~l~~v~GPlG~~~~~~------~~~~vllVaGGiGIAPl~s~~r~l~~~g--~~v~li~g~R~~~~l~~~de 145 (1006)
T PRK12775 74 MTKFKAGDTFEDFVGPLGLPQHID------KAGHVVLVGGGLGVAPVYPQLRAFKEAG--ARTTGIIGFRNKDLVFWEDK 145 (1006)
T ss_pred HhcCCCCCEEeeeecCCCCCCCCC------CCCeEEEEEEhHHHHHHHHHHHHHHhCC--CcEEEEEeCCChHHcccHHH
Confidence 489999999 7999999976543 4578999999999999999999986544 67999999999999999999
Q ss_pred HHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710 217 FKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGV 284 (293)
Q Consensus 217 l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv 284 (293)
|+.+.. . +++ +. +++|.+..|++.+.+.+. ........+|+|||+.|++.+.+.+++.|+
T Consensus 146 l~~~~~-~--~~v--~t-ddgs~G~~G~vt~~l~~~--l~~~~~d~vy~CGP~~Mm~av~~~~~~~gi 205 (1006)
T PRK12775 146 FGKYCD-D--LIV--CT-DDGSYGKPGFVTAALKEV--CEKDKPDLVVAIGPLPMMNACVETTRPFGV 205 (1006)
T ss_pred HHhhcC-c--EEE--EE-CCCCCCCCCChHHHHHHH--hccCCCCEEEEECCHHHHHHHHHHHHHCCC
Confidence 988754 2 222 22 455778889998877652 222233579999999999999999999999
No 64
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.96 E-value=2e-29 Score=214.57 Aligned_cols=229 Identities=26% Similarity=0.446 Sum_probs=193.1
Q ss_pred cCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC----------------------------
Q 022710 51 QDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---------------------------- 102 (293)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---------------------------- 102 (293)
.+-++| .++|++..+.+.=+..+.|.+++.. .-.|+||-|+++..|--
T Consensus 130 fgvkkW-ectViSNdN~ATFIKEL~laip~g~---~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~ 205 (410)
T COG2871 130 FGVKKW-ECTVISNDNKATFIKELKLAIPEGE---EVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSK 205 (410)
T ss_pred cCccce-eEEEEeCCchhhhhhhheeeCCCCC---ccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeecc
Confidence 344556 7899999888888888899887654 35789999999999721
Q ss_pred ---CceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCC
Q 022710 103 ---GKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYP 169 (293)
Q Consensus 103 ---~~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~ 169 (293)
...|.||.++-|.+ .+.+.|-|+.. +|.+|.|+.+|++||+|.++||||.+|--+ ...
T Consensus 206 v~e~~~rAYSmAsYPeE---~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisGPfGEfFaKd------tda 276 (410)
T COG2871 206 VDEPIIRAYSMASYPEE---KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISGPFGEFFAKD------TDA 276 (410)
T ss_pred ccHHHHHHhhhhcChhh---cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCCCeEEEeccchhhhhcc------CCC
Confidence 01245899999987 89999999864 278899999999999999999999976433 677
Q ss_pred eEEEEEeCcchhHHHHHHHHhh-ccCCCCcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecC--CCCCCccccc
Q 022710 170 TVLIFATGSGISPIRSLIESGF-SSKERSDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQP--DGNWSGETGY 244 (293)
Q Consensus 170 ~ivlia~GtGIaP~~sll~~~~-~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~--~~~~~~~~g~ 244 (293)
.+|+|+||.|.+|++|.|-..+ .....++++++|++|+..+++|++++++++.. ||++|.++|.+ .++|.+..|+
T Consensus 277 emvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgF 356 (410)
T COG2871 277 EMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGF 356 (410)
T ss_pred ceEEEecCcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhH
Confidence 8999999999999999877665 34567899999999999999999999999875 89999999875 5689999999
Q ss_pred cchHHHhh--hccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 245 VQAAFSRA--KKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 245 v~~~~~~~--~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
+..++.+. +.+..+.+..+|+|||+-|...+.+.|...||..++|..+
T Consensus 357 ihnv~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlGVE~enIlLD 406 (410)
T COG2871 357 IHNVLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLGVERENILLD 406 (410)
T ss_pred HHHHHHhhhhhcCCCchheeEEeeCcchhhHHHHHHHHhcCccccceeec
Confidence 99887763 2356678899999999999999999999999999999764
No 65
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.96 E-value=1.6e-28 Score=209.40 Aligned_cols=187 Identities=19% Similarity=0.297 Sum_probs=147.8
Q ss_pred eeeCC-CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---CceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhh
Q 022710 64 ISPAA-ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC 139 (293)
Q Consensus 64 ~~~~~-~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~ 139 (293)
++.++ +++++++|..+. ...|+||||++|+++.. .+.|+|||++.+.. +.+.++|+||..+|.+++.+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~-----~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~--~~~~i~~~vk~~~G~~t~~~~ 76 (210)
T cd06186 4 VELLPDSDVIRLTIPKPK-----PFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPED--EQDTLSLIIRAKKGFTTRLLR 76 (210)
T ss_pred EEEecCCCEEEEEEecCC-----CCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCC--CCCEEEEEEEecCChHHHHHH
Confidence 44455 899999998642 25789999999999965 36799999999861 028999999998788887777
Q ss_pred cCC------CCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC----CCCcEEEEEccCCcc
Q 022710 140 GLK------KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK----ERSDVRLYYGARNLK 209 (293)
Q Consensus 140 ~l~------~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~----~~~~v~l~~~~r~~~ 209 (293)
.++ .|+++.+.||||.++ .. ...++++||||||+||||++++++++.... ...+++++|++|+.+
T Consensus 77 ~~~~~~~~~~~~~v~v~GP~G~~~-~~----~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~ 151 (210)
T cd06186 77 KALKSPGGGVSLKVLVEGPYGSSS-ED----LLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE 151 (210)
T ss_pred HHHhCcCCCceeEEEEECCCCCCc-cC----hhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH
Confidence 776 899999999999844 11 126789999999999999999999998654 467999999999999
Q ss_pred c-cccHHHHHH---HHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 210 R-MAYQDKFKE---WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 210 ~-~~~~~~l~~---l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
+ .+|.++|.. +.... +++.++++ +|+|||.+|++.+++.+.+.+..
T Consensus 152 ~~~~~~~~l~~~~~~~~~~-~~~i~~T~-----------------------------v~~CGp~~~~~~~~~~~~~~~~~ 201 (210)
T cd06186 152 DLEWFLDELRAAQELEVDG-EIEIYVTR-----------------------------VVVCGPPGLVDDVRNAVAKKGGT 201 (210)
T ss_pred HhHHHHHHHHhhhhccCCc-eEEEEEee-----------------------------EEEECchhhccHHHHHHhhcCCC
Confidence 9 489999975 22211 34444444 99999999999999999887766
Q ss_pred ccCeecc
Q 022710 286 SEKILKN 292 (293)
Q Consensus 286 ~~~I~~~ 292 (293)
...++.+
T Consensus 202 ~~~~~~e 208 (210)
T cd06186 202 GVEFHEE 208 (210)
T ss_pred ceEEEee
Confidence 6665544
No 66
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.94 E-value=3.5e-26 Score=210.02 Aligned_cols=183 Identities=23% Similarity=0.445 Sum_probs=145.4
Q ss_pred cCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhhc-CCCCCEEEEEeecCCC
Q 022710 87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG 156 (293)
Q Consensus 87 ~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~~-l~~Gd~v~v~gP~G~~ 156 (293)
..+.+|||+.+..+ ..+|+|||+|+|.. .++.++|+|+.+ .|..|+||++ +++||+|.+.+|.|..
T Consensus 130 ~~~~~gq~l~l~~~--~~~R~YSIaSsp~~--~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~~~~~~~ 205 (360)
T cd06199 130 ARLTAEELLDLLRP--LQPRLYSIASSPKA--VPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNPH 205 (360)
T ss_pred CCCCHHHHHHhCcC--CCCcceeeccCccc--CCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEEEecCCC
Confidence 57799999999865 57899999999952 147899999865 4889999997 4699999999866544
Q ss_pred ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc-cccccHHHHHHHHhC--CcEEEEEEec
Q 022710 157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL-KRMAYQDKFKEWESS--GVKIVPVLSQ 233 (293)
Q Consensus 157 f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~i~~~~~~s~ 233 (293)
|.+.. +...+++|||+||||||+++++++........++.|+|++|+. ++++|+++|++|... +++++.++|+
T Consensus 206 F~lp~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~Sr 281 (360)
T cd06199 206 FRLPE----DPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFSR 281 (360)
T ss_pred cCCCC----CCCCCEEEEecCcChHHHHHHHHHHHhccCCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEcc
Confidence 86642 3467999999999999999999998755556789999999997 699999999999875 4578888898
Q ss_pred CCCCCCccccccchHHHhhhccC---CCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710 234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEEVTSIVLA 281 (293)
Q Consensus 234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~v~vCGp~-~~~~~~~~~L~~ 281 (293)
++. ..+++++.+.+..... -..+..+|+|||+ .|+++++++|.+
T Consensus 282 ~~~----~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~ 329 (360)
T cd06199 282 DQA----EKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLD 329 (360)
T ss_pred CCC----CCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHH
Confidence 653 3578888766532110 1245889999999 899998888754
No 67
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.93 E-value=1e-25 Score=208.84 Aligned_cols=188 Identities=22% Similarity=0.437 Sum_probs=145.5
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe-----------CCcchHhhhcCCCCCEEEE--EeecC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-----------AGSTAEVLCGLKKGDVVEI--SQVMG 154 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~-----------~G~~s~~L~~l~~Gd~v~v--~gP~G 154 (293)
....||++.+.-+ ..+|+|||+|+|.. .++.++|.|+.+ .|..|+||+++++||+|.+ .+|+|
T Consensus 146 ~~~~~~~l~~~p~--l~~R~YSIaSsp~~--~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g 221 (384)
T cd06206 146 ALPLATFLAMLPP--MRPRQYSISSSPLV--DPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHS 221 (384)
T ss_pred CCCHHHHHHhCcc--cCCcceeeccCccC--CCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCC
Confidence 4577999998732 57899999999852 146677777653 3789999999999999986 57888
Q ss_pred CCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHhC-CcEEE
Q 022710 155 RGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS-GVKIV 228 (293)
Q Consensus 155 ~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~-~i~~~ 228 (293)
. |.++. +..+++||||+||||||+++++++.... ....++.|+|++|+. ++++|+++|++|+.. +++++
T Consensus 222 ~-F~l~~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~~l~ 296 (384)
T cd06206 222 A-FRPPS----DPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGVVSVR 296 (384)
T ss_pred c-cCCCC----CCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCCeEEE
Confidence 7 76642 3567999999999999999999987532 234689999999999 799999999999874 67888
Q ss_pred EEEecCCCCCCccccccchHHHhhhc-c--CCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 229 PVLSQPDGNWSGETGYVQAAFSRAKK-I--FNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 229 ~~~s~~~~~~~~~~g~v~~~~~~~~~-~--~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
+++++++.. .++++++.+.+... . ....+..+|+|||+.|++++.+.|.+.+....
T Consensus 297 ~a~Sr~~~~---~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~~M~~~v~~~L~~i~~~~~ 355 (384)
T cd06206 297 RAYSRPPGG---GCRYVQDRLWAEREEVWELWEQGARVYVCGDGRMAPGVREVLKRIYAEKD 355 (384)
T ss_pred EEecccCCC---CCEechhhHHhhHHHHHHHHHCCcEEEEECCCchHHHHHHHHHHHHHHhC
Confidence 898886432 35788876644211 1 01246889999999999999999988766543
No 68
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.93 E-value=3.4e-25 Score=205.24 Aligned_cols=173 Identities=24% Similarity=0.413 Sum_probs=139.1
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEE
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL 172 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~iv 172 (293)
..+|+|||+|+|.. +++.++|+|+.+ .|..|+||+++++||+|.+.+|.|. |.+.. +...++|
T Consensus 162 l~~R~YSIaSsp~~--~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~-F~lp~----~~~~plI 234 (382)
T cd06207 162 IKPRYYSISSSPLK--NPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSS-FKLPK----DPKKPII 234 (382)
T ss_pred CCCceeeecCCCcC--CCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCc-ccCCC----CCCCCEE
Confidence 57899999999952 158899999875 3789999999999999999999997 76642 3467999
Q ss_pred EEEeCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecCCCCCCcccccc
Q 022710 173 IFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYV 245 (293)
Q Consensus 173 lia~GtGIaP~~sll~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~~g~v 245 (293)
|||+||||||+++++++.... ....++.|+|++|+. ++++|+++|++|...+ +++++.+|+++. .++|+
T Consensus 235 mIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~----~~~yV 310 (382)
T cd06207 235 MVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP----KKVYV 310 (382)
T ss_pred EEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC----CceEh
Confidence 999999999999999987532 345789999999999 8999999999998763 578888888653 36788
Q ss_pred chHHHhhhc----cCCCCCcEEEEeCChH-HHHHHHHHHHHcCCCc
Q 022710 246 QAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEEVTSIVLAEGVSS 286 (293)
Q Consensus 246 ~~~~~~~~~----~~~~~~~~v~vCGp~~-~~~~~~~~L~~~Gv~~ 286 (293)
++.+.+... ........+|+|||+. |++.+.+.|.+.+...
T Consensus 311 q~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~ 356 (382)
T cd06207 311 QDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKH 356 (382)
T ss_pred HHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHh
Confidence 887654211 1222345899999998 9999999998876543
No 69
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.93 E-value=2.8e-25 Score=215.75 Aligned_cols=183 Identities=22% Similarity=0.399 Sum_probs=147.4
Q ss_pred cCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhhc-CCCCCEEEEEeecCCC
Q 022710 87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG 156 (293)
Q Consensus 87 ~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~~-l~~Gd~v~v~gP~G~~ 156 (293)
..+.||||+.+..+ ..+|+|||+|+|.. .++.++|+|+.+ .|..|.||++ +++||+|.+.+|.|..
T Consensus 367 ~~~~~gq~v~ll~~--~~~R~YSIaSsp~~--~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~ 442 (597)
T TIGR01931 367 ADLDAEQLISLLRP--LTPRLYSISSSQSE--VGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEPNDN 442 (597)
T ss_pred CCCCHHHHHHhCcc--cCCceeeeccCccc--CCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEeeCCc
Confidence 46899999999876 57899999999852 157899999864 3899999997 9999999999876645
Q ss_pred ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHhCC--cEEEEEEec
Q 022710 157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQ 233 (293)
Q Consensus 157 f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--i~~~~~~s~ 233 (293)
|.++. +...+++|||+||||||+++++++....+...++.||||+|+ .++++|++||++|...+ .+++..+|+
T Consensus 443 F~lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSR 518 (597)
T TIGR01931 443 FRLPE----DPDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSR 518 (597)
T ss_pred ccCCC----CCCCCEEEEcCCcCchhHHHHHHHHHHccCCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEec
Confidence 86652 346789999999999999999999876666678999999999 67999999999998764 367778887
Q ss_pred CCCCCCccccccchHHHhhhcc----CCCCCcEEEEeC-ChHHHHHHHHHHHHc
Q 022710 234 PDGNWSGETGYVQAAFSRAKKI----FNPQGTGVVLCG-QKQMAEEVTSIVLAE 282 (293)
Q Consensus 234 ~~~~~~~~~g~v~~~~~~~~~~----~~~~~~~v~vCG-p~~~~~~~~~~L~~~ 282 (293)
+. +.++|+++.+.+.... .. .+..+|+|| ++.|++.+.++|.+.
T Consensus 519 d~----~~k~yVqd~l~e~~~~~~~~l~-~~a~vYvCG~~~~M~~~V~~~L~~i 567 (597)
T TIGR01931 519 DQ----AEKIYVQHRIREQGAELWQWLQ-EGAHIYVCGDAKKMAKDVHQALLDI 567 (597)
T ss_pred CC----CCCccHHHHHHHhHHHHHHHHh-CCcEEEEECCCccccHHHHHHHHHH
Confidence 43 2478999887753211 11 357899999 889999999988654
No 70
>PLN02292 ferric-chelate reductase
Probab=99.92 E-value=8.2e-24 Score=205.90 Aligned_cols=200 Identities=14% Similarity=0.139 Sum_probs=150.6
Q ss_pred eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeCCcc
Q 022710 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGST 134 (293)
Q Consensus 57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~ 134 (293)
..+++++++.+++++.+++++.++ ...++||||+++++|+. .+.|+|||++.|.. +++.++|+||.. |.+
T Consensus 325 ~~~~Iv~~~~l~~dvv~L~~~~~~-----~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~--~~~~l~l~IK~~-G~~ 396 (702)
T PLN02292 325 NNVKLVSARVLPCDTVELNFSKNP-----MLMYSPTSIMFVNIPSISKLQWHPFTITSSSKL--EPEKLSVMIKSQ-GKW 396 (702)
T ss_pred cceEEEEEEEcCCCEEEEEEEcCC-----CCCcCCCCeEEEEEccCCccceeeeEeeccCCC--CCCEEEEEEEcC-Cch
Confidence 468899999999999999998542 24789999999999864 46799999998741 167899999986 888
Q ss_pred hHhhhc-CCCCCE-----EEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCC-----CCcEEEEE
Q 022710 135 AEVLCG-LKKGDV-----VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYY 203 (293)
Q Consensus 135 s~~L~~-l~~Gd~-----v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~-----~~~v~l~~ 203 (293)
|++|.+ ++.||. |.++||||..+ .+. ..++++++||||+||||++++++++.+... .++++++|
T Consensus 397 T~~L~~~l~~gd~i~~~~V~VeGPYG~~~-~~~----~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw 471 (702)
T PLN02292 397 STKLYHMLSSSDQIDRLAVSVEGPYGPAS-TDF----LRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLIC 471 (702)
T ss_pred hHHHHHhCCCCCccccceEEEECCccCCc-ccc----ccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEE
Confidence 888875 788884 57999999843 221 256799999999999999999999975431 26899999
Q ss_pred ccCCccccccHHHHHH-------HHh-CCcEEEEEEecCCCCCC-ccccccchHHHhhhccCCC--CCcEEEEeCChHH
Q 022710 204 GARNLKRMAYQDKFKE-------WES-SGVKIVPVLSQPDGNWS-GETGYVQAAFSRAKKIFNP--QGTGVVLCGQKQM 271 (293)
Q Consensus 204 ~~r~~~~~~~~~~l~~-------l~~-~~i~~~~~~s~~~~~~~-~~~g~v~~~~~~~~~~~~~--~~~~v~vCGp~~~ 271 (293)
++|+.+|+.+.|++.+ +.+ .++++..+++++++... +..| ++...++....+. +++...+|||++-
T Consensus 472 ~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~Gp~~~ 548 (702)
T PLN02292 472 AFKNSSDLSMLDLILPTSGLETELSSFIDIQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPNLSDQPISPILGPNSW 548 (702)
T ss_pred EECCHHHhhHHHHHHHhhhhHHHHhhcCCceEEEEEeCCCCCCCccccc--chhhhhhhcCCCCCCCCceEEEeCCCch
Confidence 9999999988876643 222 37888888888765432 1223 4444432222222 6789999999753
No 71
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.92 E-value=4.5e-24 Score=198.51 Aligned_cols=170 Identities=21% Similarity=0.398 Sum_probs=135.7
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEeC----CcchHhhhcCC-----CCCEEEEEe-ecCCCccccCCCCCC-CCCeE
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSVA----GSTAEVLCGLK-----KGDVVEISQ-VMGRGFAVDRIQPPD-EYPTV 171 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~----G~~s~~L~~l~-----~Gd~v~v~g-P~G~~f~l~~~~p~~-~~~~i 171 (293)
..+|+|||+|+|.. .++.++|+|+.+. |..|+||++++ +|++|.+.+ |.| .|.++. + ...++
T Consensus 172 ~~~R~YSIsSsp~~--~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g-~F~lp~----~~~~~pi 244 (398)
T cd06203 172 LQPRPYSIASSPLE--GPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSS-RFRLPP----DDLRRPI 244 (398)
T ss_pred CCCcceeecCCccc--CCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEecCC-CcCCCC----cCCCCCE
Confidence 56899999999952 1488999998864 78999999987 999999998 455 487653 2 35789
Q ss_pred EEEEeCcchhHHHHHHHHhhc------cCCCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecCCCCCCccc
Q 022710 172 LIFATGSGISPIRSLIESGFS------SKERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGET 242 (293)
Q Consensus 172 vlia~GtGIaP~~sll~~~~~------~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~~ 242 (293)
+|||+||||||+++++++... .....++.||||+|+. ++++|+++|++|...+ .++++++|++++.+ +.+
T Consensus 245 ImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SRd~~~~-g~k 323 (398)
T cd06203 245 IMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSRDENDG-STP 323 (398)
T ss_pred EEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECCCCCCC-CCc
Confidence 999999999999999998764 2345789999999999 6999999999998763 46888899876543 567
Q ss_pred cccchHHHhhhc----cCCCCCcEEEEeCC-hHHHHHHHHHHH
Q 022710 243 GYVQAAFSRAKK----IFNPQGTGVVLCGQ-KQMAEEVTSIVL 280 (293)
Q Consensus 243 g~v~~~~~~~~~----~~~~~~~~v~vCGp-~~~~~~~~~~L~ 280 (293)
+||++.+.+... .....+..+|+||| +.|.++++++|.
T Consensus 324 ~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~ 366 (398)
T cd06203 324 KYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFV 366 (398)
T ss_pred eecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHH
Confidence 999988765321 11235688999999 579899988886
No 72
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.91 E-value=9e-24 Score=196.88 Aligned_cols=170 Identities=26% Similarity=0.461 Sum_probs=132.6
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEe------------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCe
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPT 170 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ 170 (293)
.++|+|||+|+|.. .++.++|.|+.+ .|..|+||+++++||+|.+.++.+..|.++. +...+
T Consensus 175 l~pR~YSIsSsp~~--~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~----~~~~p 248 (406)
T cd06202 175 LQPRYYSISSSPDM--YPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPE----DPSVP 248 (406)
T ss_pred cCCcccccCCCccC--CCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCCccCCCC----CCCCC
Confidence 57899999999852 146677777653 3789999999999999999886554586652 35679
Q ss_pred EEEEEeCcchhHHHHHHHHhhc--------cCCCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecCCCCCC
Q 022710 171 VLIFATGSGISPIRSLIESGFS--------SKERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWS 239 (293)
Q Consensus 171 ivlia~GtGIaP~~sll~~~~~--------~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~ 239 (293)
+||||+||||||+++++++... .....++.|+||+|+. ++.+|++||++|...+ .++++++|+++..
T Consensus 249 iImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~~-- 326 (406)
T cd06202 249 VIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGK-- 326 (406)
T ss_pred EEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCCC--
Confidence 9999999999999999998532 1235789999999999 7899999999998764 4688889986432
Q ss_pred ccccccchHHHhhhcc----CCCCCcEEEEeCChHHHHHHHHHHHH
Q 022710 240 GETGYVQAAFSRAKKI----FNPQGTGVVLCGQKQMAEEVTSIVLA 281 (293)
Q Consensus 240 ~~~g~v~~~~~~~~~~----~~~~~~~v~vCGp~~~~~~~~~~L~~ 281 (293)
.++|+++.+.+.... ....+..+|+|||+.|++++.+.|.+
T Consensus 327 -~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L~~ 371 (406)
T cd06202 327 -PKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTIQR 371 (406)
T ss_pred -CCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHHHH
Confidence 368999887653211 12357889999999999998888754
No 73
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.91 E-value=1.4e-23 Score=203.23 Aligned_cols=183 Identities=21% Similarity=0.366 Sum_probs=144.8
Q ss_pred cCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhhc-CCCCCEEEEEeecCCC
Q 022710 87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRG 156 (293)
Q Consensus 87 ~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~~-l~~Gd~v~v~gP~G~~ 156 (293)
..+.+|||+.+..+ ..+|+|||+|+|.. .++.++|.|+.+ .|..|.||++ +++||+|.+.+|.|..
T Consensus 370 ~~~~~~q~l~ll~~--l~pR~YSIaSsp~~--~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~ 445 (600)
T PRK10953 370 AQLDAEQLIGLLRP--LTPRLYSIASSQAE--VENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVFIEHNDN 445 (600)
T ss_pred CCCCHHHHHHhCCC--CCCeeeecccCCCC--CCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEEeccCCc
Confidence 36799999999876 56899999999852 157888887543 3778999985 9999999999988755
Q ss_pred ccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHhCCc--EEEEEEec
Q 022710 157 FAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSGV--KIVPVLSQ 233 (293)
Q Consensus 157 f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~i--~~~~~~s~ 233 (293)
|.+.. +...+++|||+||||||+++++++........++.||||+|+ ..+++|++||++|...+. ++...+||
T Consensus 446 F~lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSR 521 (600)
T PRK10953 446 FRLPA----NPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSR 521 (600)
T ss_pred ccCCC----CCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECC
Confidence 86652 356799999999999999999999876666689999999999 668999999999998754 57788888
Q ss_pred CCCCCCccccccchHHHhhhccC---CCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710 234 PDGNWSGETGYVQAAFSRAKKIF---NPQGTGVVLCGQK-QMAEEVTSIVLA 281 (293)
Q Consensus 234 ~~~~~~~~~g~v~~~~~~~~~~~---~~~~~~v~vCGp~-~~~~~~~~~L~~ 281 (293)
++. .++||++.+.+..... -..+..+|+||+. .|.+++.++|.+
T Consensus 522 d~~----~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~ 569 (600)
T PRK10953 522 DQK----EKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLE 569 (600)
T ss_pred CCC----CCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHH
Confidence 653 4789998776532110 0246889999996 587888887754
No 74
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.89 E-value=2e-22 Score=188.33 Aligned_cols=168 Identities=22% Similarity=0.431 Sum_probs=131.9
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEeC----------CcchHhhhcCC---------------------CCCEEEEEe
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSVA----------GSTAEVLCGLK---------------------KGDVVEISQ 151 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~----------G~~s~~L~~l~---------------------~Gd~v~v~g 151 (293)
..+|+|||+|+|.. +++.++|+|+.+. |..|+||+++. +||+|.+..
T Consensus 176 ~~pR~YSIsSsp~~--~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~ 253 (416)
T cd06204 176 LQPRYYSISSSSKV--HPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFV 253 (416)
T ss_pred CCCcceeeccCccC--CCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEE
Confidence 57899999999953 1578999888541 77899999866 899999999
Q ss_pred ecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc----CCCCcEEEEEccCCc-cccccHHHHHHHHhC--C
Q 022710 152 VMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS----KERSDVRLYYGARNL-KRMAYQDKFKEWESS--G 224 (293)
Q Consensus 152 P~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~----~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~--~ 224 (293)
|.|. |.++. +...++||||+||||||+++++++.... ....++.|+||+|+. ++++|+++|++|... +
T Consensus 254 ~~g~-F~lp~----~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~~ 328 (416)
T cd06204 254 RRSN-FRLPT----KPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLGGL 328 (416)
T ss_pred ecCC-CCCCC----CCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHcCCc
Confidence 9997 76642 3468999999999999999999986421 234689999999999 789999999999875 5
Q ss_pred cEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEEEeCChH-HHHHHHHHHHHc
Q 022710 225 VKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQ-MAEEVTSIVLAE 282 (293)
Q Consensus 225 i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~~-~~~~~~~~L~~~ 282 (293)
++++..+|++++ .++++++.+.+... ... ....+|+|||+. |++.+.+.|.+.
T Consensus 329 ~~l~~a~Sr~~~----~k~yVq~~i~~~~~~~~~~l~-~~~~vYvCGp~~~M~~~V~~~L~~i 386 (416)
T cd06204 329 LELVTAFSREQP----KKVYVQHRLAEHAEQVWELIN-EGAYIYVCGDAKNMARDVEKTLLEI 386 (416)
T ss_pred eEEEEEECcCCC----CCcchHHHHHHhHHHHHHHHH-cCCEEEEECCcccchHHHHHHHHHH
Confidence 788888888543 46788877654211 111 357899999998 999988888653
No 75
>PRK06214 sulfite reductase; Provisional
Probab=99.89 E-value=2.4e-22 Score=191.03 Aligned_cols=169 Identities=23% Similarity=0.467 Sum_probs=127.6
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEE
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVL 172 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~iv 172 (293)
.++|+|||+|.|.. .++.++|+||.+ .|..|+||+ .+++||+|.+.++.+.+|.++. +...++|
T Consensus 314 l~pR~YSISSsP~~--~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~gF~lp~----~~~~PiI 387 (530)
T PRK06214 314 LQPRLYSISSSPKA--TPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHGFALPA----DPNTPII 387 (530)
T ss_pred CCcEEEEeccCCcC--CCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCCCCCccCC----CCCCCEE
Confidence 57899999999852 157899999865 378899998 6999999999764333376642 3457899
Q ss_pred EEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHhCCc--EEEEEEecCCCCCCccccccchHH
Q 022710 173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSGV--KIVPVLSQPDGNWSGETGYVQAAF 249 (293)
Q Consensus 173 lia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~i--~~~~~~s~~~~~~~~~~g~v~~~~ 249 (293)
|||+||||||+++++++........++.|||++|. ..+++|+++|++|...+. ++++.+|++.. .++|+++.+
T Consensus 388 mIg~GTGIAPfrsfLq~r~~~~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd~~----~k~YVQ~~L 463 (530)
T PRK06214 388 MVGPGTGIAPFRAFLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRDGE----EKTYVQDRM 463 (530)
T ss_pred EEcCCeeHHHHHHHHHHHHHhcCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecCCC----CCCchhhHH
Confidence 99999999999999998765445578999999965 568999999999987643 57777887643 357888776
Q ss_pred Hhhhc-c--CCCCCcEEEEeCChH-HHHHHHHHHHH
Q 022710 250 SRAKK-I--FNPQGTGVVLCGQKQ-MAEEVTSIVLA 281 (293)
Q Consensus 250 ~~~~~-~--~~~~~~~v~vCGp~~-~~~~~~~~L~~ 281 (293)
.+... + .-..+..+|+|||.. |.+++++.|.+
T Consensus 464 ~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~ 499 (530)
T PRK06214 464 RENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVD 499 (530)
T ss_pred HHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHH
Confidence 54211 1 012467899999975 55888887754
No 76
>PLN02631 ferric-chelate reductase
Probab=99.89 E-value=6.9e-22 Score=192.18 Aligned_cols=165 Identities=18% Similarity=0.243 Sum_probs=132.4
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeCCcch
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGSTA 135 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s 135 (293)
.+++++++.+++++.++++..+ + ...++||||++|++|.. .+.|+|||++.|.. +++.++|+||.. |.+|
T Consensus 309 ~~~lv~~~~l~~d~l~l~~~~~--~---~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~--~~~~L~~~IK~~-Gg~T 380 (699)
T PLN02631 309 RSRLVSARILPSDNLELTFSKT--P---GLHYTPTSILFLHVPSISKLQWHPFTITSSSNL--EKDTLSVVIRRQ-GSWT 380 (699)
T ss_pred eEEEEEEEEeCCCeEEEEEEcC--C---CCcCCCCceEEEEeccCCccceEEEEEeccCCC--CCCEEEEEEEcC-ChHH
Confidence 3678888888899999888742 2 24789999999999964 46799999998742 157899999986 8999
Q ss_pred Hhhhc-CCC-CC--EEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCC-----CCcEEEEEccC
Q 022710 136 EVLCG-LKK-GD--VVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRLYYGAR 206 (293)
Q Consensus 136 ~~L~~-l~~-Gd--~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~-----~~~v~l~~~~r 206 (293)
++|.+ ++. || ++.++||||. +..+ ...++++|+||||+||||++++++++..... ..+++|+|++|
T Consensus 381 ~~L~~~l~~~g~~i~V~VeGPYG~-~~~~----~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR 455 (699)
T PLN02631 381 QKLYTHLSSSIDSLEVSTEGPYGP-NSFD----VSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFK 455 (699)
T ss_pred HHHHHhhhcCCCeeEEEEECCCCC-CCCC----cCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEEC
Confidence 99975 654 45 6788999996 4322 1367899999999999999999999975321 24799999999
Q ss_pred CccccccHHHHHH-------HHhCCcEEEEEEecCC
Q 022710 207 NLKRMAYQDKFKE-------WESSGVKIVPVLSQPD 235 (293)
Q Consensus 207 ~~~~~~~~~~l~~-------l~~~~i~~~~~~s~~~ 235 (293)
+.++++|.|+|+. +++.+++++.++||++
T Consensus 456 ~~~dL~f~deL~~l~~~~~~l~~~ni~i~iyVTR~~ 491 (699)
T PLN02631 456 HYHDLAFLDLIFPLDISVSDISRLNLRIEAYITRED 491 (699)
T ss_pred CHHHhhhHHHHhhhccchhhhhcCceEEEEEEcCCC
Confidence 9999999999986 5555899999999864
No 77
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.88 E-value=3.1e-21 Score=188.52 Aligned_cols=194 Identities=14% Similarity=0.204 Sum_probs=141.3
Q ss_pred eEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 60 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
.+++++..+++++++++..+ + ...|+||||++|.+|..+ +.|+|||+|.|.. +++.++|.||.. |..|+.
T Consensus 315 ~vvs~~~~~~~~v~l~i~r~--~---~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~--~~~~l~~~IK~~-gG~T~~ 386 (722)
T PLN02844 315 CILSARLFPCKAIELVLPKD--P---GLKYAPTSVIFMKIPSISRFQWHPFSITSSSNI--DDHTMSVIIKCE-GGWTNS 386 (722)
T ss_pred EEEEEEEecCCEEEEEEECC--C---CCCcCCCeeEEEEECCCCceeEEEEEeecCCCC--CCCeEEEEEEeC-CCchHH
Confidence 35566777788888887642 2 257899999999999654 6899999997631 167899999987 656665
Q ss_pred hhc-----CCCC------CEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCC-----CCcEEE
Q 022710 138 LCG-----LKKG------DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKE-----RSDVRL 201 (293)
Q Consensus 138 L~~-----l~~G------d~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~-----~~~v~l 201 (293)
|.+ +++| .++.++||||. +..+. ..++++++||||+||||++++++++...++ ..++.|
T Consensus 387 L~~~i~~~l~~g~~~~~~~~v~VeGPYG~-~s~~~----~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~L 461 (722)
T PLN02844 387 LYNKIQAELDSETNQMNCIPVAIEGPYGP-ASVDF----LRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQL 461 (722)
T ss_pred HHHHHHhhccCCCCcccceEEEEECCccC-CCCCc----cCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEE
Confidence 532 3344 37899999997 54432 256899999999999999999999975332 368999
Q ss_pred EEccCCccccccHHHHHH-----HHh-CCcEEEEEEecCCCCCCccccccchHHHhh----hccCCCCCcEEEEeCChH
Q 022710 202 YYGARNLKRMAYQDKFKE-----WES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRA----KKIFNPQGTGVVLCGQKQ 270 (293)
Q Consensus 202 ~~~~r~~~~~~~~~~l~~-----l~~-~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~----~~~~~~~~~~v~vCGp~~ 270 (293)
+|++|+.+++.+.+++.. +.+ .++++++++|+++... .++.+.+..- ....+++...+.+||+.+
T Consensus 462 Iw~vR~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~----~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~ 536 (722)
T PLN02844 462 IYVVKKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPN----ATLRELLNQFSQVQTVNFSTKCSRYAIHGLES 536 (722)
T ss_pred EEEECCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCC----CchhhHhhccchhhhcCCCCCCCceEEeCCCc
Confidence 999999999999999862 122 3788999999876532 2444433321 122456677899999964
No 78
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.88 E-value=1.5e-22 Score=171.50 Aligned_cols=215 Identities=20% Similarity=0.290 Sum_probs=154.1
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCc------eeeEEecCCCCCCCCCCeEEEEEE
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGK------PTFLAIASPPSFASASGAFEFLVK 128 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~------~r~ySi~s~p~~~~~~~~~~~~Vk 128 (293)
.|.+++|.+.+.++.|+..+.+...++ .+..++..|||||.+...-.+. .+.||.++... .+.++|.||
T Consensus 148 G~~~F~vT~~~~~sSDv~~~~~~PK~~-~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~----rN~~R~sVr 222 (385)
T KOG3378|consen 148 GEVEFKVTELINESSDVKSVYLGPKDP-AFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTC----RNQFRISVR 222 (385)
T ss_pred CccceeeeeeeccccceeEEEecCCCc-ceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhh----ccceeEEEe
Confidence 588999999999999999999987654 5667788999999998764432 23466666665 789999999
Q ss_pred EeCC-cchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccC
Q 022710 129 SVAG-STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206 (293)
Q Consensus 129 ~~~G-~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r 206 (293)
+..| -.|+++| ++++||.|.++.|-|+ |.+.+-. .+..++++++|||+||||++++|+..+. .|.+|
T Consensus 223 ~~A~G~VS~~~H~~~KVGD~v~~S~PAG~-F~~~r~~-~~~N~PL~~~a~GiGiTPLi~iiE~~~~---------C~~~R 291 (385)
T KOG3378|consen 223 RVAGGVVSNFVHDNLKVGDIVGVSPPAGN-FVYKRSE-ENVNRPLLCFAGGIGITPLIPIIETALL---------CYSSR 291 (385)
T ss_pred ehhchhhHHHhhccccccceeeccCCCcc-ceeehhh-hccCCceEEecCCcCccccHHHHHHHHh---------cCCCC
Confidence 9875 7899998 5999999999999998 7665422 2345899999999999999999998752 34444
Q ss_pred CccccccHHHHHHHHhC---CcEEEEEEecC----CC--CCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHH
Q 022710 207 NLKRMAYQDKFKEWESS---GVKIVPVLSQP----DG--NWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTS 277 (293)
Q Consensus 207 ~~~~~~~~~~l~~l~~~---~i~~~~~~s~~----~~--~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~ 277 (293)
+|..-++++..+ +.+..-.++.+ +. -.......+++.+.+ ..+....++|.|||..+|+.+..
T Consensus 292 -----P~~~~~~~~~~K~k~~~K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~---~~~~s~~DiY~~G~~~~M~~~~~ 363 (385)
T KOG3378|consen 292 -----PFKQWLEQLKLKYKENLKLKEFFSEESSVTKEQIVDEVMTRIINEEDLE---KLDLSECDIYMLGPNNYMRFVKQ 363 (385)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhhhcCHHHhh---hcChhhCceeeeCcHHHHHHHHH
Confidence 222222222110 11100000000 00 000112345555555 34567889999999999999999
Q ss_pred HHHHcCCCccCeeccC
Q 022710 278 IVLAEGVSSEKILKNF 293 (293)
Q Consensus 278 ~L~~~Gv~~~~I~~~~ 293 (293)
.|.+.|+..+.|+.+|
T Consensus 364 ~L~~L~~~~~~v~~E~ 379 (385)
T KOG3378|consen 364 ELVKLGVEPNKVQSEF 379 (385)
T ss_pred HHHHhcCCccceeccc
Confidence 9999999999999886
No 79
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.1e-19 Score=173.90 Aligned_cols=169 Identities=24% Similarity=0.471 Sum_probs=136.6
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEeC---------CcchHhhhcCCC-CCEEEEEeecCCCccccCCCCCCCCCeEE
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSVA---------GSTAEVLCGLKK-GDVVEISQVMGRGFAVDRIQPPDEYPTVL 172 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~---------G~~s~~L~~l~~-Gd~v~v~gP~G~~f~l~~~~p~~~~~~iv 172 (293)
..+|+|||+|.+.. .+++++++|..+. |..|.||+++.+ ||.+.+....++.|.+.. +...+++
T Consensus 371 lkPR~YSIsSs~~~--~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~----~~~~PiI 444 (587)
T COG0369 371 LKPRLYSIASSPGV--SPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPE----DPETPII 444 (587)
T ss_pred CCCeeeEeccCCCC--CCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEeccCCccccCC----CCCCceE
Confidence 57899999999975 2467777765432 677999998666 999999887775586653 3448999
Q ss_pred EEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC-ccccccHHHHHHHHhCC--cEEEEEEecCCCCCCccccccchHH
Q 022710 173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARN-LKRMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGETGYVQAAF 249 (293)
Q Consensus 173 lia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~~g~v~~~~ 249 (293)
||+.||||||+++++++...++...++.||||+|+ ..|.+|++|++++..+| .++...+|+++. .+-||++.+
T Consensus 445 MIG~GTGIAPFRafvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~----~KiYVQd~l 520 (587)
T COG0369 445 MIGPGTGIAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQE----EKIYVQDRL 520 (587)
T ss_pred EEcCCCCchhHHHHHHHHHhccccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCC----CCccHHHHH
Confidence 99999999999999999988777779999999999 66899999999998876 577778888763 578999988
Q ss_pred Hhhhc----cCCCCCcEEEEeC-ChHHHHHHHHHHHHc
Q 022710 250 SRAKK----IFNPQGTGVVLCG-QKQMAEEVTSIVLAE 282 (293)
Q Consensus 250 ~~~~~----~~~~~~~~v~vCG-p~~~~~~~~~~L~~~ 282 (293)
.+... ..+. ...+|+|| ...|.+++.++|.+.
T Consensus 521 re~~del~~~l~~-ga~~YVCGd~~~Ma~dV~~AL~~i 557 (587)
T COG0369 521 REQADELWEWLEE-GAHIYVCGDAKGMAKDVEEALLDI 557 (587)
T ss_pred HHhHHHHHHHHHC-CCEEEEeCCCccchHHHHHHHHHH
Confidence 77421 2333 38999999 889999999988753
No 80
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.82 E-value=6e-20 Score=140.14 Aligned_cols=104 Identities=28% Similarity=0.555 Sum_probs=87.5
Q ss_pred EEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhC--C-cEEEEEEecCCCCCCccccccchHH
Q 022710 173 IFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESS--G-VKIVPVLSQPDGNWSGETGYVQAAF 249 (293)
Q Consensus 173 lia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~--~-i~~~~~~s~~~~~~~~~~g~v~~~~ 249 (293)
||||||||||++|+++++.+.+...+++|+|++|+.++++|+++|++|... + ++++.+ +..++.|.+..|++++.+
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~~ 79 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERNDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDLL 79 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHTCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHHH
T ss_pred CeecceeHHHHHHHHHHHHHhCCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHHH
Confidence 799999999999999999977778999999999999999999999999864 3 555555 666677888899999988
Q ss_pred Hhhhcc--CCCCCcEEEEeCChHHHHHHHH
Q 022710 250 SRAKKI--FNPQGTGVVLCGQKQMAEEVTS 277 (293)
Q Consensus 250 ~~~~~~--~~~~~~~v~vCGp~~~~~~~~~ 277 (293)
.+.... .+..+..+|+|||++|++.+++
T Consensus 80 ~~~~~~~~~~~~~~~v~iCGp~~m~~~v~~ 109 (109)
T PF00175_consen 80 LEDLLPEKIDPDDTHVYICGPPPMMKAVRK 109 (109)
T ss_dssp HHHHHHHHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred HHhhcccccCCCCCEEEEECCHHHHHHhcC
Confidence 553222 3567899999999999999864
No 81
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=3.8e-18 Score=166.70 Aligned_cols=212 Identities=16% Similarity=0.234 Sum_probs=153.5
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeCCcch
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVAGSTA 135 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s 135 (293)
.+++.++.-++.++.++++..+ ..+.++||||++|.+|.. .++++|||+|+|+ ++.+.++||.. |+.|
T Consensus 356 ~~~i~~~~llp~~vi~L~~~Kp-----~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~----dd~lsvhIk~~-g~wT 425 (646)
T KOG0039|consen 356 NVKIAKVVLLPSDVLELIMSKP-----PGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPE----DDFLSVHIKAL-GDWT 425 (646)
T ss_pred CceEEEEEEcCCCeEEEEEeCC-----CCCCCCCCCEEEEECccccccccCCceeecCCC----CCEEEEEEEec-CcHH
Confidence 4788999999999999999753 246899999999999965 5799999999994 89999999998 8888
Q ss_pred Hhhhc-CC------------CCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC--------
Q 022710 136 EVLCG-LK------------KGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK-------- 194 (293)
Q Consensus 136 ~~L~~-l~------------~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~-------- 194 (293)
+.|.+ +. ..-++.+.||||.+- .+ -.+++.++||++|+|+||+.|+++.++.+.
T Consensus 426 ~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s-~d----~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~ 500 (646)
T KOG0039|consen 426 EKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPS-QD----VFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAP 500 (646)
T ss_pred HHHHHHHhhhcccccccccccCceEEEECCCCCCc-hh----hhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCc
Confidence 87754 22 145799999999854 12 137889999999999999999999998431
Q ss_pred --------CCCcEEEEEccCCcccc-ccHHHHHHHHh---CC-cEEEEEEecCCC-----------------------CC
Q 022710 195 --------ERSDVRLYYGARNLKRM-AYQDKFKEWES---SG-VKIVPVLSQPDG-----------------------NW 238 (293)
Q Consensus 195 --------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~---~~-i~~~~~~s~~~~-----------------------~~ 238 (293)
...+++.+|.+|+..+. .|.+.+.+++. .+ ++++.+.++.-. ..
T Consensus 501 ~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~ 580 (646)
T KOG0039|consen 501 TSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIV 580 (646)
T ss_pred cccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhcccccCcccc
Confidence 23568999998877764 67776666653 23 455555543210 00
Q ss_pred C-------ccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710 239 S-------GETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGV 284 (293)
Q Consensus 239 ~-------~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv 284 (293)
. ..+....+.+.+...........|+.|||+.|++++++.+.+..-
T Consensus 581 ~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~ 633 (646)
T KOG0039|consen 581 TGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSS 633 (646)
T ss_pred ccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhccc
Confidence 0 012233344444222222223799999999999999999988644
No 82
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.78 E-value=4.4e-18 Score=127.76 Aligned_cols=94 Identities=28% Similarity=0.381 Sum_probs=81.2
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA-GST 134 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~ 134 (293)
+++|++++.++++++.++|+.+++. ....|.||||+.|+++..+ ..|+|||++.+.. ++.++|+||.++ |.+
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~--~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~---~~~~~~~ik~~~~G~~ 75 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPD--QKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDD---KGYLEFAIKRYPNGRV 75 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTT--TT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS---SSEEEEEEEECTTSHH
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCC--cccccCcceEEEEEEccCCcceecceeEeeecCC---CCcEEEEEEeccCCHH
Confidence 5789999999999999999987543 2367899999999999443 4799999999976 789999999986 689
Q ss_pred hHhhhcCCCCCEEEEEeecCCCc
Q 022710 135 AEVLCGLKKGDVVEISQVMGRGF 157 (293)
Q Consensus 135 s~~L~~l~~Gd~v~v~gP~G~~f 157 (293)
|+||+++++||+|.++||+|+ |
T Consensus 76 S~~L~~l~~Gd~v~i~gP~G~-f 97 (99)
T PF00970_consen 76 SRYLHQLKPGDEVEIRGPYGN-F 97 (99)
T ss_dssp HHHHHTSCTTSEEEEEEEESS-E
T ss_pred HHHHHhCCCCCEEEEEEcccc-c
Confidence 999999999999999999998 5
No 83
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.77 E-value=3.1e-18 Score=164.12 Aligned_cols=169 Identities=23% Similarity=0.509 Sum_probs=127.4
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEe---C--------CcchHhhhcCCCCCEEEEEeecCCC-ccccCCCCCCCCCe
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSV---A--------GSTAEVLCGLKKGDVVEISQVMGRG-FAVDRIQPPDEYPT 170 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---~--------G~~s~~L~~l~~Gd~v~v~gP~G~~-f~l~~~~p~~~~~~ 170 (293)
.++|+|||+|++... ++.+.+++-.+ . |-.|+||+++++|+.+...+|.+.. |.+ |++...+
T Consensus 420 L~pR~YSIssS~~~~--~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frl----p~dp~~P 493 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVH--PNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRL----PSDPSTP 493 (645)
T ss_pred ccccccccccCcccC--CCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeecccceec----CCCCCCc
Confidence 579999999988652 45555444321 1 5679999999999999854555552 433 3456789
Q ss_pred EEEEEeCcchhHHHHHHHHhhccC------CCCcEEEEEccCCcccc-ccHHHHHHHHhCC--cEEEEEEecCCCCCCcc
Q 022710 171 VLIFATGSGISPIRSLIESGFSSK------ERSDVRLYYGARNLKRM-AYQDKFKEWESSG--VKIVPVLSQPDGNWSGE 241 (293)
Q Consensus 171 ivlia~GtGIaP~~sll~~~~~~~------~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~ 241 (293)
++|||.||||||+++++++..... ... +.||||+|+.+.. +|++|++++...+ .++...+||.+. +.
T Consensus 494 iIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~---~~ 569 (645)
T KOG1158|consen 494 IIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQT---PK 569 (645)
T ss_pred EEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCC---CC
Confidence 999999999999999999987432 123 8999999999965 9999999997764 467788898764 35
Q ss_pred ccccchHHHhhh----ccCCCCCcEEEEeCChH-HHHHHHHHHHH
Q 022710 242 TGYVQAAFSRAK----KIFNPQGTGVVLCGQKQ-MAEEVTSIVLA 281 (293)
Q Consensus 242 ~g~v~~~~~~~~----~~~~~~~~~v~vCGp~~-~~~~~~~~L~~ 281 (293)
+-|+++.+.+.. ......+..+|+||... |.+++.++|..
T Consensus 570 k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~ 614 (645)
T KOG1158|consen 570 KIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVR 614 (645)
T ss_pred ceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHH
Confidence 668888766532 12334589999999998 99999998865
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.74 E-value=9.6e-17 Score=159.79 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=103.6
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC-----CceeeEEecCCCCCCCCCCeEEEEEEEeCC
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-----GKPTFLAIASPPSFASASGAFEFLVKSVAG 132 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-----~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G 132 (293)
.++|++++.++++++.++|+.+. ....++||||++|+.++. ..++++||++.+.. .+.++|+++.+ |
T Consensus 792 ~~~Vv~~~~lap~i~~L~l~aP~----iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e---~g~It~i~rvV-G 863 (1028)
T PRK06567 792 TSRVNKINILDDKTFELIIHSPL----AAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE---KGLISFIVFEV-G 863 (1028)
T ss_pred ceEEEEEEEecCCEEEEEEeCcc----hhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCC---CCEEEEEEEEE-C
Confidence 58999999999999999997543 223679999999998642 25578999998765 78999999999 9
Q ss_pred cchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEE
Q 022710 133 STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY 203 (293)
Q Consensus 133 ~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~ 203 (293)
..|+.|+++++||.+.+.||+|++|.+. ..+++++||||+|++| +++++.+ ...+|..+.
T Consensus 864 kgT~~Ls~l~~Gd~v~v~GPLG~pF~i~------~~k~vLLVgGGVGiAp---Lak~Lk~--~G~~V~~~~ 923 (1028)
T PRK06567 864 KSTSLCKTLSENEKVVLMGPTGSPLEIP------QNKKIVIVDFEVGNIG---LLKVLKE--NNNEVIFVT 923 (1028)
T ss_pred hHHHHHhcCCCCCEEEEEcccCCCCCCC------CCCeEEEEEccccHHH---HHHHHHH--CCCeEEEEE
Confidence 9999999999999999999999999764 2468999999999997 5566543 234555554
No 85
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.3e-14 Score=123.67 Aligned_cols=214 Identities=9% Similarity=0.140 Sum_probs=154.8
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----------------------ceeeEEec
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----------------------KPTFLAIA 111 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----------------------~~r~ySi~ 111 (293)
...+.++|+.++++++++.+++|..++...+ ......+||+.|.+|... ..|.|||.
T Consensus 15 ~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f-~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR 93 (265)
T COG2375 15 PRLHEATVTRVTQLSPHMVRVVLGGEGLAGF-ASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIR 93 (265)
T ss_pred ccceEEEEEEEEecCCCeEEEEEeccccccc-ccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceee
Confidence 3577899999999999999999997655433 112344559999998431 15779998
Q ss_pred CCCCCCCCCCeEEE--EEEEeCCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHH
Q 022710 112 SPPSFASASGAFEF--LVKSVAGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189 (293)
Q Consensus 112 s~p~~~~~~~~~~~--~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~ 189 (293)
..+.. .+++.+ ++....|+.|.|..++++||+|.+.||.|..+ .+ ..+..++|++.-+++..|..+|++
T Consensus 94 ~~d~~---~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP~g~~~-p~-----~~~~~~lLigDetAlPAIa~iLE~ 164 (265)
T COG2375 94 AVDAA---AGELDVDFVLHGEGGPASRWARTAQPGDTLTIMGPRGSLV-PP-----EAADWYLLIGDETALPAIARILET 164 (265)
T ss_pred eeccc---ccEEEEEEEEcCCCCcchhhHhhCCCCCEEEEeCCCCCCC-CC-----CCcceEEEeccccchHHHHHHHHh
Confidence 66544 566555 44433479999999999999999999999833 22 378899999999999999999999
Q ss_pred hhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCCh
Q 022710 190 GFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQK 269 (293)
Q Consensus 190 ~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~ 269 (293)
+ +.....+.+..+.+..+.. ++.. ..++++.++...... ....+.++..+ .....++..+|+.|..
T Consensus 165 l---p~~~~~~a~lev~d~ad~~---~l~~--~~~l~~~Wl~r~~~~----~~~ll~~a~~~--~~~P~~~~~vwiagE~ 230 (265)
T COG2375 165 L---PADTPAEAFLEVDDAADRD---ELPS--PDDLELEWLARDDAP----TEQLLAAALAQ--AALPAGDYYVWIAGEA 230 (265)
T ss_pred C---CCCCceEEEEEeCChHHhh---ccCC--CCceeEEEecCCCcc----chHHHHHHHhc--ccCCCCceEEEEeccH
Confidence 8 4455668888888887752 2211 126777777443321 11223333333 1222345899999999
Q ss_pred HHHHHHHHHHHHc-CCCccCeec
Q 022710 270 QMAEEVTSIVLAE-GVSSEKILK 291 (293)
Q Consensus 270 ~~~~~~~~~L~~~-Gv~~~~I~~ 291 (293)
++++.+++.|++. |+++++|+.
T Consensus 231 ~~v~~~Rk~L~~e~g~dk~~i~a 253 (265)
T COG2375 231 SAVKAIRKFLRNERGFDKSRVRA 253 (265)
T ss_pred HHHHHHHHHHhhhcCCCHHHhhh
Confidence 9999999999875 999998864
No 86
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=99.60 E-value=5.9e-15 Score=134.64 Aligned_cols=162 Identities=24% Similarity=0.451 Sum_probs=122.4
Q ss_pred ceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEE
Q 022710 104 KPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLI 173 (293)
Q Consensus 104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivl 173 (293)
++|.|||+|.+. .-.++++|-.+ .|.-|+||++|++|++|.+.---|. +.++. +-..+++|
T Consensus 367 rPR~fSIas~~~----~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~-l~~p~----~~~~PlIm 437 (574)
T KOG1159|consen 367 RPRAFSIASSPG----AHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGT-LYFPS----DLNKPLIM 437 (574)
T ss_pred ccceeeeccCCC----CCceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCc-cccCC----CCCCCeEE
Confidence 589999999998 44588766443 1788999999999999988776675 55542 24679999
Q ss_pred EEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc-ccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhh
Q 022710 174 FATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK-RMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRA 252 (293)
Q Consensus 174 ia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~ 252 (293)
|+-||||||+++++.+..-.. .....||||+|+.+ |.+|.++..+... ...+..+|++++ .+-|+++.+.+.
T Consensus 438 VGPGTGvAPfRa~i~er~~q~-~~~~~lFfGCR~K~~Df~y~~eW~~~~~--~~~~~AFSRDqe----~kvYVQh~i~e~ 510 (574)
T KOG1159|consen 438 VGPGTGVAPFRALIQERIYQG-DKENVLFFGCRNKDKDFLYEDEWTELNK--RAFHTAFSRDQE----QKVYVQHKIREN 510 (574)
T ss_pred EcCCCCcccHHHHHHHHHhhc-cCCceEEEecccCCccccccchhhhhhc--chhhhhcccccc----cceeHHHHHHHh
Confidence 999999999999999986422 34447899999998 6888877766653 445557788765 356888877663
Q ss_pred h----ccCCCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710 253 K----KIFNPQGTGVVLCGQK-QMAEEVTSIVLA 281 (293)
Q Consensus 253 ~----~~~~~~~~~v~vCGp~-~~~~~~~~~L~~ 281 (293)
. ......+..||+||+. .|-.++.++|.+
T Consensus 511 g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~e 544 (574)
T KOG1159|consen 511 GEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIE 544 (574)
T ss_pred hHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHH
Confidence 2 1234578899999997 787888887765
No 87
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.50 E-value=9.1e-14 Score=112.82 Aligned_cols=112 Identities=20% Similarity=0.360 Sum_probs=73.4
Q ss_pred CCeEEEEEeCcchhHHHHHHHHhhccC-----CCCcEEEEEccCCcccc-ccHHHHHHHHh---C-CcEEEEEEecCCCC
Q 022710 168 YPTVLIFATGSGISPIRSLIESGFSSK-----ERSDVRLYYGARNLKRM-AYQDKFKEWES---S-GVKIVPVLSQPDGN 237 (293)
Q Consensus 168 ~~~ivlia~GtGIaP~~sll~~~~~~~-----~~~~v~l~~~~r~~~~~-~~~~~l~~l~~---~-~i~~~~~~s~~~~~ 237 (293)
|+++||||||+||||++++++++.... ...+|+|+|.+|+.+++ +|.+.|.++.. . ++++++++++..+.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~ 80 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSA 80 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT----
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCccc
Confidence 568999999999999999999997432 35889999999999987 67755554433 3 78888888775432
Q ss_pred CC-------------------------------ccccc--cchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHH
Q 022710 238 WS-------------------------------GETGY--VQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIV 279 (293)
Q Consensus 238 ~~-------------------------------~~~g~--v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L 279 (293)
.. ...|+ +.+.+.+...........|++|||++|++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v 155 (156)
T PF08030_consen 81 PSNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV 155 (156)
T ss_dssp ---------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred ccchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence 10 00111 22333332123445779999999999999999875
No 88
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.13 E-value=5.2e-12 Score=95.73 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=6.3
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----ceeeEEecCCCCCCCCCCeEEEEEEEeCCc
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKSVAGS 133 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~ 133 (293)
..++++++.+.++++++++..+.. .+.|+||||++|+++... ++++|||++.+. ++.++|+||.. |.
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~----~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~----~~~i~l~ik~~-g~ 73 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSS----PFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE----DNSITLIIKAR-GG 73 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCC----CCCCCCceEEEEEEcCcCcCcccccccEeeccCC----CCEEEEEEEeC-CC
Confidence 356778888889999999875432 157899999999999654 789999999997 78999999998 77
Q ss_pred chHhhhcC--------CCCCEEEEEeecCC
Q 022710 134 TAEVLCGL--------KKGDVVEISQVMGR 155 (293)
Q Consensus 134 ~s~~L~~l--------~~Gd~v~v~gP~G~ 155 (293)
+|+.|.+. ..+-++.|+||||.
T Consensus 74 ~T~~L~~~~~~~~~~~~~~~~v~idGPYG~ 103 (105)
T PF08022_consen 74 WTKRLYEHLSESPSKQGNRLRVFIDGPYGA 103 (105)
T ss_dssp -----------------------TTSTTSH
T ss_pred chHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence 77777642 23446788999995
No 89
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=98.89 E-value=7.2e-09 Score=79.94 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=59.7
Q ss_pred eEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC-----------------------ceeeEEecCCCCC
Q 022710 60 PLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG-----------------------KPTFLAIASPPSF 116 (293)
Q Consensus 60 ~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~-----------------------~~r~ySi~s~p~~ 116 (293)
+|++++.+++++++++|..++-.++ ....+||||.|.+|..+ ..|.||+.+.+..
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~--~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~ 78 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGF--PSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPE 78 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT----S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT
T ss_pred CEEEEEECCCCEEEEEEECCCcccC--ccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCC
Confidence 5899999999999999996544333 23489999999998541 3577999887654
Q ss_pred CCCCCeEEEEEEEeC--CcchHhhhcCCCCCEEEEEeecCC
Q 022710 117 ASASGAFEFLVKSVA--GSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 117 ~~~~~~~~~~Vk~~~--G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
.++++|-+-.+. |+.+.|..++++||+|.|.||.|.
T Consensus 79 ---~~~l~iDfv~Hg~~Gpas~WA~~A~pGd~v~v~gP~g~ 116 (117)
T PF08021_consen 79 ---TGELDIDFVLHGDEGPASRWARSARPGDRVGVTGPRGS 116 (117)
T ss_dssp -----EEEEEEE--SS--HHHHHHHH--TT-EEEEEEEE--
T ss_pred ---CCEEEEEEEECCCCCchHHHHhhCCCCCEEEEeCCCCC
Confidence 788888666664 689999999999999999999987
No 90
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=98.24 E-value=9.9e-06 Score=62.67 Aligned_cols=110 Identities=10% Similarity=0.139 Sum_probs=71.1
Q ss_pred CeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchH
Q 022710 169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAA 248 (293)
Q Consensus 169 ~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~ 248 (293)
+.++|++.-|++..+.++++++ +...+++++..+.+.++...... ..+++++++..... ......+.+.
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~l---p~~~~~~v~iev~~~~d~~~l~~-----~~~~~v~wv~r~~~---~~~~~~l~~a 70 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEAL---PADAPGTVFIEVPDEADRQPLPA-----PAGVEVTWVPRDGP---AAQGSALADA 70 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS----TT-EEEEEEEESSGGG------------TEEEEEEEE-SS-----TT-HHHHHH
T ss_pred ceEEEEeccccHHHHHHHHHhC---CCCCeEEEEEEECChHhcccCCC-----CCCCEEEEEeCCCC---CchHHHHHHH
Confidence 5789999999999999999998 56688899999988887543322 33778877755543 1112233343
Q ss_pred HHhhhccCCCCCcEEEEeCChHHHHHHHHHHH-HcCCCccCeec
Q 022710 249 FSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVL-AEGVSSEKILK 291 (293)
Q Consensus 249 ~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~-~~Gv~~~~I~~ 291 (293)
+.. ......+..+|++|..++++.+++.|+ +.|+++++|++
T Consensus 71 l~~--~~~~~~~~~vW~AgE~~~~r~lR~~l~~~~g~~~~~~~~ 112 (119)
T PF04954_consen 71 LRD--LPLPAGDGYVWVAGEASAVRALRRHLREERGLPRDRIYA 112 (119)
T ss_dssp HTT--S---SS-EEEEEEEEHHHHHHHHHHHHHH----GGGEEE
T ss_pred HHH--hhccCCCeEEEEEecHHHHHHHHHHHHHhhCCCHHHeEE
Confidence 333 122356899999999999999999998 66999999875
No 91
>PLN02631 ferric-chelate reductase
Probab=85.30 E-value=1.3 Score=44.39 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=32.0
Q ss_pred ccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710 242 TGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 242 ~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
+..+.+.+.+. ....+.+|++|||++|-+++.+.|+... .++.|+
T Consensus 648 rp~~~~i~~~~---~~~~~vgvlv~gp~~~~~~va~~c~s~~--~~~~~f 692 (699)
T PLN02631 648 KPNLKKILLEA---EGSEDVGVMVCGPRKMRHEVAKICSSGL--AKNLHF 692 (699)
T ss_pred CCCHHHHHHhc---cCCCceeEEEECcHHHHHHHHHHHhcCC--CcceeE
Confidence 34455655542 2235899999999999999999998754 445544
No 92
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=85.04 E-value=1.3 Score=44.65 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=31.2
Q ss_pred cccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710 243 GYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGV 284 (293)
Q Consensus 243 g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv 284 (293)
...++.+.+..+.....+.+|++|||++|.+.+.+.|+..+.
T Consensus 658 p~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~ 699 (722)
T PLN02844 658 PNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQ 699 (722)
T ss_pred CCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhccc
Confidence 345555544333344678999999999999999999988755
No 93
>PLN02292 ferric-chelate reductase
Probab=84.15 E-value=1.6 Score=43.95 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=32.7
Q ss_pred cccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710 241 ETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 241 ~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
.+..+.+.+.+ ....+.+|++|||++|-+++.+.|+... .++.|+
T Consensus 651 ~rp~~~~i~~~----~~~~~vgvlv~gp~~~~~~va~~c~s~~--~~~~~~ 695 (702)
T PLN02292 651 ERPNLNKLLVG----LKGSSVGVLVCGPKKMRQKVAKICSSGL--AENLHF 695 (702)
T ss_pred CCCCHHHHHHh----cCCCceeEEEECcHHHHHHHHHHHhcCC--CcceeE
Confidence 34456666644 2356899999999999999999998755 444544
No 94
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=75.38 E-value=9.7 Score=26.59 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=42.5
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
....|..|.++..+.+....|.+..+.....+.+ .|-. ..+..+.|-..++||++.+..|.|.
T Consensus 5 ~V~~Gs~V~l~~~~~~~~~~~~lv~~~~~~~~~~----~IS~-~SPLG~ALlG~~~Gd~v~~~~~~g~ 67 (77)
T PF01272_consen 5 VVTIGSTVTLKDLDDGEEETYTLVGPDEADPDNG----KISI-DSPLGKALLGKKVGDEVEVELPGGE 67 (77)
T ss_dssp B-STTEEEEEEETTTTEEEEEEEE-GGG-BSTST----EEET-TSHHHHHHTT-BTT-EEEEEETTBE
T ss_pred EEEeCCEEEEEECCCCCEEEEEEEeEhHhCCcee----EEEe-cCHHHHHhcCCCCCCEEEEEeCCce
Confidence 4588999999987777777788876654322234 2222 2578888888999999999999884
No 95
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=75.11 E-value=9.5 Score=27.31 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=49.1
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
-++|.+++... +-.+++++.++. . ...+..|++|.+. | -..|+.+.. ++.|+|.+-.. -.....
T Consensus 7 ~g~I~~i~~~~-~~~~~~i~~~~~-~--~~~~~~g~SIavn----G--vcLTV~~~~-----~~~f~~~l~~e-Tl~~T~ 70 (85)
T PF00677_consen 7 TGKIISIEKNG-DSQRLRIEIPDK-I--LSDLKIGGSIAVN----G--VCLTVTDIN-----EDWFEVDLIPE-TLRRTT 70 (85)
T ss_dssp EEEEEEEEEES-SEEEEEEEESTG-G--GGTG-TTSEEEET----T--EEEEEEEEE-----TTEEEEEEEHH-HHHCSS
T ss_pred EEEEEEEEECC-CCEEEEEEcCHH-H--HhhCccCcEEEEC----C--eeeEEEEec-----CCEEEEechHH-Hhhhch
Confidence 46777777765 566888887632 2 2467888877764 2 235777666 56788876654 222445
Q ss_pred hhcCCCCCEEEEE
Q 022710 138 LCGLKKGDVVEIS 150 (293)
Q Consensus 138 L~~l~~Gd~v~v~ 150 (293)
|..+++||+|.++
T Consensus 71 l~~~~~G~~VNlE 83 (85)
T PF00677_consen 71 LGNLKVGDRVNLE 83 (85)
T ss_dssp GGG--TTSEEEEE
T ss_pred hccCCCCCEEEEe
Confidence 7889999999886
No 96
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=73.03 E-value=11 Score=29.73 Aligned_cols=61 Identities=15% Similarity=0.298 Sum_probs=44.6
Q ss_pred CCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 90 RAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 90 ~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
.-|..|.++..+.++...|+|..+.+.+..++.+.+ ..+..+.|-..++||++.+..|-|.
T Consensus 56 ~~Gs~V~~~~~~~~~~~~~~iVg~~Ead~~~~~ISi-----~SPlG~ALlG~~~Gd~v~v~~p~G~ 116 (137)
T PRK05753 56 TMNSRVRFRDLSSGEERVRTLVYPADADDSEGQLSV-----LAPVGAALLGLSVGQSIDWPLPGGK 116 (137)
T ss_pred EeCCEEEEEECCCCCEEEEEEEChhHcCccCCcCcc-----cCHHHHHHcCCCCCCEEEEECCCCC
Confidence 456688888766677788999877654322443333 2577888888999999999999885
No 97
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=71.50 E-value=15 Score=29.68 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=44.2
Q ss_pred CCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 89 TRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 89 ~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
+.-|..|.|.. ..++...|++..+...+...+.+.+ ..+..+.|-..++||+|.+..|.|.
T Consensus 86 V~~Gs~V~l~d-~~~~~~~~~iVgp~e~d~~~~~IS~-----~SPlG~ALlGk~vGd~v~v~~p~g~ 146 (157)
T PRK01885 86 VFFGAWVEIEN-EDGEEKRFRIVGPDEIDGRKGYISI-----DSPMARALLKKEVGDEVTVNTPAGE 146 (157)
T ss_pred EEeCCEEEEEE-CCCCEEEEEEEChHHhCcCCCeEec-----cCHHHHHHhCCCCCCEEEEEcCCCc
Confidence 46677888876 4456667888776543222454444 3678888999999999999999886
No 98
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=70.37 E-value=44 Score=31.41 Aligned_cols=40 Identities=10% Similarity=0.233 Sum_probs=27.2
Q ss_pred eeeEeEeeeCCC---CeEEEEEEcCCCccccccCCCCCeEEEEEEcC
Q 022710 58 PTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVD 101 (293)
Q Consensus 58 ~~~v~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~ 101 (293)
.++|..+...-+ .++.+++.++++. ..++||+|+.+.+..
T Consensus 279 ~g~v~~i~p~vd~~trt~~vrv~l~N~~----~~L~pGm~v~v~i~~ 321 (409)
T PRK09783 279 TIRKWTLLPSVDAATRTLQLRLEVDNAD----EALKPGMNAWLQLNT 321 (409)
T ss_pred EEEEEEEccccCCCCcEEEEEEEEeCCC----CccCCCCEEEEEEec
Confidence 556665543332 6777788776543 357999999999974
No 99
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=67.86 E-value=14 Score=31.43 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
+....++|++++.++. ++++++|++.+. ...|+||.++.|.....
T Consensus 6 ~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~----~l~Y~pGD~l~V~P~N~ 55 (219)
T PF00667_consen 6 KNPFPATVLENRRLTSPGSDRSTRHIELDLSDS----GLSYQPGDHLGVYPPND 55 (219)
T ss_dssp TB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTS----TG---TT-EEEEE-SSE
T ss_pred CCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCC----CCcccCCCEEEEEccCC
Confidence 3466889999988886 699999998754 36899999999997643
No 100
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=64.03 E-value=8.5 Score=32.76 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=16.4
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEe
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSV 130 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~ 130 (293)
.++|+|||+|++.. ..+.++|+|..+
T Consensus 177 l~PR~YSIsSS~~~--~p~~v~ltv~vv 202 (219)
T PF00667_consen 177 LQPRYYSISSSPLV--HPNKVHLTVSVV 202 (219)
T ss_dssp ---EEEEB-S-TTT--STTEEEEEEEE-
T ss_pred CCCcceeecccccC--CCCEEEEEEEEE
Confidence 57899999999853 368899988865
No 101
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=63.48 E-value=16 Score=29.34 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=44.5
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
.+..|..|.++..+.++...|.+..+... +.-...|-. ..+..+.|-..++||++.+..|.|.
T Consensus 85 ~V~~Gs~V~l~~~~~~~~~~~~lvg~~e~----d~~~~~IS~-~SPlG~aLlGk~~Gd~v~~~~p~g~ 147 (157)
T PRK00226 85 KVKFGSTVTLKDLDTDEEETYQIVGSDEA----DPKQGKISI-ESPIARALIGKKVGDTVEVTTPGGE 147 (157)
T ss_pred EEecCCEEEEEECCCCCEEEEEEEChhhc----CccCCeecc-CChHHHHHhCCCCCCEEEEEcCCCc
Confidence 45788999998776667777888865542 211122222 2577888888999999999999885
No 102
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=61.16 E-value=26 Score=28.06 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=45.2
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
...-|+.|.+...+.++...|+|..+...+...+.+ .. ..++.+.|-..++||++.+.+|.|.
T Consensus 78 ~V~~Gs~V~~~~~~~ge~~~~~iVg~~ead~~~~~I----S~-~SPig~aLlGk~vGd~v~v~~p~g~ 140 (151)
T COG0782 78 VVTFGSTVTLENLDDGEEVTYTIVGPDEADPAKGKI----SV-DSPLGRALLGKKVGDTVEVNTPGGE 140 (151)
T ss_pred EEecCCEEEEEECCCCCEEEEEEEcccccccccCce----ec-cCHHHHHHhCCCCCCEEEEecCCce
Confidence 357788999998777777889988777532212222 21 2578888989999999999999443
No 103
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=60.71 E-value=22 Score=28.36 Aligned_cols=63 Identities=22% Similarity=0.336 Sum_probs=43.6
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
....|..|.|...+.++...|.+..+...+...+ .|- ...+..+.|-..++||.+.+..|.|.
T Consensus 80 ~V~~Gs~V~l~~~~~g~~~~~~lVgp~e~d~~~~----~IS-~~SPlG~ALlG~~~Gd~v~v~~p~g~ 142 (151)
T TIGR01462 80 VVGFGSTVTIKDLDTGEEETYTIVGSWEADPKEG----KIS-IDSPLGKALIGKKVGDVVEVQTPKGE 142 (151)
T ss_pred EEeeCCEEEEEECCCCCEEEEEEECchhcCccCC----eec-CCCHHHHHHcCCCCCCEEEEEeCCCc
Confidence 3477888999877556666788877664311122 222 12577788888999999999999886
No 104
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=58.95 E-value=88 Score=26.91 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=28.4
Q ss_pred eeeeEeEeeeCCC---CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 57 TPTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 57 ~~~~v~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
..++|..+....+ ..+.+++.+.++. ..+.+|+++.+.+...
T Consensus 155 ~~g~v~~I~~~~~~~~~~~~v~~~~~~~~----~~l~~G~~v~v~i~~~ 199 (265)
T TIGR00999 155 LPARVDYVGPEVDGSSRTAKVRVLIKNEN----LTLKPGLFVQVRVETK 199 (265)
T ss_pred EEEEEEEEccccCCCCceEEEEEEEeCCC----CccCCCCEEEEEEecC
Confidence 5677877765433 4566666665432 3579999999999754
No 105
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=54.14 E-value=49 Score=26.65 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=43.5
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
.+..|..|.|...+ ++...|+|..+...+...+.+. ...+..+.|-..++||+|.+..|-|.
T Consensus 83 ~V~~Gs~V~l~d~~-~~~~~~~iVgp~ead~~~~~IS-----~~SPlG~ALlGk~~GD~v~v~~p~g~ 144 (156)
T TIGR01461 83 KVFFGAWVELENDD-GVTHRFRIVGYDEIDGRKNYIS-----IDSPLARALLKKEVGDEVVVNTPAGE 144 (156)
T ss_pred EEecCeEEEEEECC-CCEEEEEEEChHHhCcCCCeEC-----CCCHHHHHHcCCCCCCEEEEEcCCCc
Confidence 34678899998643 5667788876654322244333 22577888888999999999998885
No 106
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=51.53 E-value=43 Score=27.05 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=43.2
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
.+..|..|.|... .++...|.|...+..+..... .-.|- ...+..+.|-..++||+|.+..|-|.
T Consensus 82 ~V~~Gs~Vtl~~~-~g~~~~~~IVg~~e~d~~~~~-~~~IS-~~SPlG~ALlGk~vGD~v~v~~p~g~ 146 (158)
T PRK05892 82 TLPGGTEVTLRFP-DGEVETMHVISVVEETPVGRE-AETLT-ADSPLGQALAGHQAGDTVTYSTPQGP 146 (158)
T ss_pred EEEcCcEEEEEEC-CCCEEEEEEeCchhcCccccc-CCEEc-cCCHHHHHHhCCCCCCEEEEEcCCCc
Confidence 3467889999864 456777888876642100000 11222 22578888888999999999999885
No 107
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=50.06 E-value=14 Score=28.05 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.|.+ +||+.+|||++|
T Consensus 75 ~~~s~~i~~~l~~~LgIp~dRiYI~f 100 (113)
T PTZ00450 75 KMMTPRITAAITKECGIPAERIYVFY 100 (113)
T ss_pred HHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 4788888888864 699999999987
No 108
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=49.23 E-value=28 Score=26.86 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHcCCCccCeecc
Q 022710 269 KQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 269 ~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
..-++.+++.|.+.|+++++|.+.
T Consensus 76 ~~Rv~~~k~~L~~~Gi~~eRv~~~ 99 (124)
T PF02662_consen 76 EKRVERLKKLLEELGIEPERVRLY 99 (124)
T ss_pred HHHHHHHHHHHHHcCCChhHeEEE
Confidence 345678888999999999998764
No 109
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=49.18 E-value=1.1e+02 Score=28.22 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=26.0
Q ss_pred eeeEeEeeeCC---CCeEEEEEEcCCCccccccCCCCCeEEEEEEcC
Q 022710 58 PTPLAEISPAA---ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD 101 (293)
Q Consensus 58 ~~~v~~~~~~~---~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~ 101 (293)
.++|..+.... ..++.+++.++++. ..+.||+|+.+.+..
T Consensus 256 ~g~v~~i~~~~d~~t~t~~V~~~~~n~~----~~L~pGm~~~v~i~~ 298 (385)
T PRK09578 256 KGKLLFSDLAVDPTTDTVAMRALFPNPE----RELLPGAYVRIALDR 298 (385)
T ss_pred ceEEEEeeccCCCCCCeEEEEEEEeCCC----CcCCCCCEEEEEEEc
Confidence 45665543222 25667777776542 357999999999974
No 110
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=48.84 E-value=2e+02 Score=25.83 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=56.7
Q ss_pred EEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHH
Q 022710 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAF 249 (293)
Q Consensus 171 ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~ 249 (293)
.++-....-..-...+++.+.+.....++-++|......... .+.++ .++..++++.....-+... ..+...+
T Consensus 119 ~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~-~~~~~~~~~~~G~~vv~~~~~~~~~-----~d~~~~v 192 (362)
T cd06343 119 WTFGWQPSYQDEARIYAKYLVEEKPNAKIAVLYQNDDFGKDY-LKGLKDGLGDAGLEIVAETSYEVTE-----PDFDSQV 192 (362)
T ss_pred ceEecCCChHHHHHHHHHHHHHhCCCceEEEEEeccHHHHHH-HHHHHHHHHHcCCeEEEEeeecCCC-----ccHHHHH
Confidence 333333333444455666554433346888888643332222 22332 3444577765443332211 1122222
Q ss_pred HhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCe
Q 022710 250 SRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289 (293)
Q Consensus 250 ~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I 289 (293)
.+ +...+-..+++.+.......+.+.+++.|++...+
T Consensus 193 ~~---i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (362)
T cd06343 193 AK---LKAAGADVVVLATTPKFAAQAIRKAAELGWKPTFL 229 (362)
T ss_pred HH---HHhcCCCEEEEEcCcHHHHHHHHHHHHcCCCceEE
Confidence 22 11223356777788877888888889999886544
No 111
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=45.90 E-value=1.8e+02 Score=25.64 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=59.6
Q ss_pred EEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHHH
Q 022710 172 LIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAFS 250 (293)
Q Consensus 172 vlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~ 250 (293)
++-....-..-...+++.+.......++-+++.. +.....+.+.+. .++..|++++-...-+.+. ......+.
T Consensus 111 ~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~-~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~-----~d~~~~~~ 184 (343)
T PF13458_consen 111 VFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPD-DPYGRSLAEAFRKALEAAGGKVVGEIRYPPGD-----TDFSALVQ 184 (343)
T ss_dssp EEESS--HHHHHHHHHHHHHHTTTTSEEEEEEES-SHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTS-----SHHHHHHH
T ss_pred EEEEeccccHHHHHHHHHHHHHcCCcEEEEEecC-chhhhHHHHHHHHHHhhcCceeccceeccccc-----ccchHHHH
Confidence 3344444456677777776654446789888865 333333344443 3444588864332222111 12222222
Q ss_pred hhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCe
Q 022710 251 RAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289 (293)
Q Consensus 251 ~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I 289 (293)
+. ... +...+++|+.+.....+.+.+.+.|.....|
T Consensus 185 ~l--~~~-~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (343)
T PF13458_consen 185 QL--KSA-GPDVVVLAGDPADAAAFLRQLRQLGLKPPRI 220 (343)
T ss_dssp HH--HHT-TTSEEEEESTHHHHHHHHHHHHHTTGCSCTE
T ss_pred HH--hhc-CCCEEEEeccchhHHHHHHHHHhhccccccc
Confidence 21 111 2234888888888888888888898877655
No 112
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=44.87 E-value=26 Score=31.31 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=51.5
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEc----CCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDI----SDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV 130 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~----~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~ 130 (293)
....++|..+++++..-+.+ ++. ....++..-+..-|- +|- .......+| +++.|.-++ .|.+.-+|+.
T Consensus 198 eL~~a~vt~ieplG~gDRVC-VDTcsLm~~gEGMLVGs~s~gm--FlV-hsEs~espY-VAaRPFRVN-AG~VhaYi~v- 270 (376)
T COG1465 198 ELVTATVTEIEPLGSGDRVC-VDTCSLMTRGEGMLVGSQSRGM--FLV-HSESEESPY-VAARPFRVN-AGAVHAYIRV- 270 (376)
T ss_pred EEEEEEEEEEeecCCCceEE-EeeecccccCCceEeecccCcE--EEE-ecccccCcc-cccCceeec-ccceeEEEEc-
Confidence 35678999999988743222 221 112222111112222 111 111112222 233333223 5778889985
Q ss_pred CCcchHhhhcCCCCCEEEEEeecCC
Q 022710 131 AGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 131 ~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
||.-|+||+.|+.||+|.+----|+
T Consensus 271 Pg~kTkYLaEL~aGDeV~iVD~dGr 295 (376)
T COG1465 271 PGGKTKYLAELKAGDEVLIVDFDGR 295 (376)
T ss_pred CCCceEEhhhhcCCCeEEEEecCCc
Confidence 5999999999999999998554443
No 113
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=44.78 E-value=55 Score=23.64 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=22.9
Q ss_pred CCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecC
Q 022710 120 SGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMG 154 (293)
Q Consensus 120 ~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G 154 (293)
.+.+..++=+..|........+++||+|.+.|-..
T Consensus 27 ~~~i~cv~f~~~g~~~~~~~~l~~Gd~V~v~G~v~ 61 (91)
T cd04482 27 TGEIDCAAYEPTKEFRDVVRLLIPGDEVTVYGSVR 61 (91)
T ss_pred CcEEEEEEECcccccccccCCCCCCCEEEEEEEEe
Confidence 44566655443344555556799999999988543
No 114
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=44.68 E-value=1.5e+02 Score=27.79 Aligned_cols=41 Identities=7% Similarity=0.158 Sum_probs=27.4
Q ss_pred eeeeEeEeeeCC---CCeEEEEEEcCCCccccccCCCCCeEEEEEEcC
Q 022710 57 TPTPLAEISPAA---ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD 101 (293)
Q Consensus 57 ~~~~v~~~~~~~---~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~ 101 (293)
..++|..+...- ..++.+++.++++. ..+.||||+.+++..
T Consensus 272 ~~G~v~~I~~~id~~t~t~~v~a~~~n~~----~~L~pG~~v~v~i~~ 315 (415)
T PRK11556 272 SEGTLLSLDNQIDATTGTIKLKARFNNQD----DALFPNQFVNARMLV 315 (415)
T ss_pred eeeEEEEeeccccCCCCEEEEEEEeCCCC----CccCCCCEEEEEEEe
Confidence 357777766433 35667777776543 357999999998853
No 115
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=42.96 E-value=42 Score=30.73 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.1
Q ss_pred CeEEEEEeCcc--hhHHHHHHHHhhc
Q 022710 169 PTVLIFATGSG--ISPIRSLIESGFS 192 (293)
Q Consensus 169 ~~ivlia~GtG--IaP~~sll~~~~~ 192 (293)
+++++.||||| |.|.+++.+++.+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 46899999997 9999999999864
No 116
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=42.82 E-value=1.5e+02 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=27.6
Q ss_pred eeeEeEeeeCCC---CeEEEEEEcCCCccccccCCCCCeEEEEEEcC
Q 022710 58 PTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVD 101 (293)
Q Consensus 58 ~~~v~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~ 101 (293)
.++|..+....+ .++.+++.++++. ..+.||+|+.+.+..
T Consensus 253 ~g~v~~i~~~~d~~t~t~~v~~~~~n~~----~~l~pGm~v~v~i~~ 295 (385)
T PRK09859 253 TGTLKFSDPTVDETTGSVTLRAIFPNPN----GDLLPGMYVTALVDE 295 (385)
T ss_pred ceEEEEecCccCCCCCeEEEEEEEECCC----CeECCCCEEEEEEec
Confidence 567777654443 5667777765543 357999999999974
No 117
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=42.10 E-value=1.8e+02 Score=27.10 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=26.9
Q ss_pred eeeEeEeeeCCC---CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 58 PTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 58 ~~~v~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
.++|..+....+ .++.+++.++++. ..+.||+|+.+.+...
T Consensus 257 ~g~v~~i~~~~d~~trt~~V~~~~~n~~----~~L~pGm~~~v~i~~~ 300 (397)
T PRK15030 257 DGTLEFSDVTVDQTTGSITLRAIFPNPD----HTLLPGMFVRARLEEG 300 (397)
T ss_pred ceEEEEeeccccCCCCeEEEEEEEeCCC----CcccCCCEEEEEEeec
Confidence 466665544332 5667777776543 3579999999998743
No 118
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=41.22 E-value=1.2e+02 Score=25.75 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=52.5
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
-++|.+++... +...+++..+ +.+ ..+..++.+|.+.- -..|+.... ++.|++.+-.+ -.-..-
T Consensus 106 ~~~i~~i~~~~-~~~~~~i~~~--~~~-~~~i~~kgSIaidG------vsLTV~~v~-----~~~f~v~lIp~-Tl~~T~ 169 (206)
T PRK13020 106 TATVVEISDTE-ENYDIRFRVP--PEW-MKYIFAKGFIGVNG------CSLTVGEVD-----ESEFEVHLIPE-TLRATN 169 (206)
T ss_pred EEEEEEEEEcC-CCEEEEEEEC--hHH-hcccccCCEEEEee------EEEEEEeEc-----CCEEEEEEeHH-HHhhcc
Confidence 47788888765 4556777764 223 23567788777652 236777765 56677777554 222334
Q ss_pred hhcCCCCCEEEEEe-ecCC
Q 022710 138 LCGLKKGDVVEISQ-VMGR 155 (293)
Q Consensus 138 L~~l~~Gd~v~v~g-P~G~ 155 (293)
|..+++||.|.++- ..|+
T Consensus 170 l~~~k~G~~VNiE~D~~~k 188 (206)
T PRK13020 170 LGAKKVGDLVNIEIDSQTQ 188 (206)
T ss_pred cccCCCCCEEEEeEeccch
Confidence 77899999999965 4444
No 119
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=40.83 E-value=2.5e+02 Score=24.67 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=30.0
Q ss_pred ceeeeEeEeeeCCC---CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 56 WTPTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 56 ~~~~~v~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
...++|..+....+ ..+.+++.+..+ ...+.+|+++.+.+...
T Consensus 202 ~~~g~I~~I~~~~~~~~~~~~v~~~~~~~----~~~l~~G~~v~v~i~~~ 247 (322)
T TIGR01730 202 EFKGKLRFIDPRVDSGTGTVRVRATFPNP----DGRLLPGMFGRVTISLK 247 (322)
T ss_pred eEeEEEEEEeccccCCCCeEEEEEEEcCC----CCcCCCCCEEEEEEecC
Confidence 45677777765444 577777777553 24679999999988643
No 120
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=40.54 E-value=30 Score=27.28 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=20.0
Q ss_pred CcEEEEeC------ChHHHHHHHHHHHHcCCCccCeecc
Q 022710 260 GTGVVLCG------QKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 260 ~~~v~vCG------p~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
...++++| ..+-.+.+++.|.+.||+.++|..+
T Consensus 38 ~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e 76 (155)
T PF02698_consen 38 APRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILE 76 (155)
T ss_dssp T--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE
T ss_pred CCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEcc
Confidence 44588888 5566778888888889998888754
No 121
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=37.65 E-value=1.5e+02 Score=24.88 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=49.5
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
.++|.++++..+ -.+++++.+. .+ ..+..+|.+|.+. | -..|+.... ++.|++.+-.+ -.-..-
T Consensus 105 ~g~I~~i~~~~~-~~~~~i~~~~--~~-~~~l~~kgSIavd----G--vsLTV~~~~-----~~~f~v~lipe-Tl~~T~ 168 (194)
T PRK09289 105 TGEIVSIEKEGN-SVEFRFKAPA--EL-AKYIVEKGSIAVD----G--VSLTVNEVD-----GDRFSVNLIPH-TLENTT 168 (194)
T ss_pred EEEEEEEEECCC-cEEEEEECCh--HH-hcccccCCEEEEc----c--EEEEEEEEc-----CCEEEEEEeHH-HHhhCc
Confidence 377788877654 4577887642 22 2356888888775 2 236777665 56677766533 122234
Q ss_pred hhcCCCCCEEEEEe
Q 022710 138 LCGLKKGDVVEISQ 151 (293)
Q Consensus 138 L~~l~~Gd~v~v~g 151 (293)
|..+++||.|.++-
T Consensus 169 l~~~k~G~~VNlE~ 182 (194)
T PRK09289 169 LGEKKVGDRVNLEI 182 (194)
T ss_pred cccCCCCCEEEEeE
Confidence 67899999998863
No 122
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=36.23 E-value=3.5e+02 Score=24.87 Aligned_cols=83 Identities=11% Similarity=0.127 Sum_probs=46.7
Q ss_pred CCCcEEEEEccCCccc--cccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHH
Q 022710 195 ERSDVRLYYGARNLKR--MAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQM 271 (293)
Q Consensus 195 ~~~~v~l~~~~r~~~~--~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~ 271 (293)
.-+++.++|...+... +...+.|. .++..|+++......+.. .....+.+.+ ... ....+++|++...
T Consensus 136 ~W~~vaiiy~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~-----~~d~~~~l~~---ik~-~~rvii~~~~~~~ 206 (387)
T cd06386 136 HWRSALLVYEDDKQERNCYFTLEGVHHVFQEEGYHMSIYPFDETK-----DLDLDEIIRA---IQA-SERVVIMCAGADT 206 (387)
T ss_pred CCeEEEEEEEcCCCCccceehHHHHHHHHHhcCceEEEEecCCCC-----cccHHHHHHH---HHh-cCcEEEEecCHHH
Confidence 3467888886433222 22255554 344457776543222111 1123333333 112 2378889999888
Q ss_pred HHHHHHHHHHcCCCc
Q 022710 272 AEEVTSIVLAEGVSS 286 (293)
Q Consensus 272 ~~~~~~~L~~~Gv~~ 286 (293)
...+.....+.|+..
T Consensus 207 ~~~ll~~A~~~gm~~ 221 (387)
T cd06386 207 IRSIMLAAHRRGLTS 221 (387)
T ss_pred HHHHHHHHHHcCCCC
Confidence 888888888889875
No 123
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=33.08 E-value=2.7e+02 Score=24.62 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=34.2
Q ss_pred cHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHc
Q 022710 213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAE 282 (293)
Q Consensus 213 ~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~ 282 (293)
+.+.++.+...++++.+..++... ...+...+. . ......+++||-.+.+.++.+.|...
T Consensus 16 ~~~~~~~l~~~g~~~~v~~t~~~~-------~a~~~a~~~--~-~~~~d~vv~~GGDGTi~ev~ngl~~~ 75 (293)
T TIGR03702 16 VREAVGDLRDEGIQLHVRVTWEKG-------DAQRYVAEA--L-ALGVSTVIAGGGDGTLREVATALAQI 75 (293)
T ss_pred HHHHHHHHHHCCCeEEEEEecCCC-------CHHHHHHHH--H-HcCCCEEEEEcCChHHHHHHHHHHhh
Confidence 344444566667777666555422 222332221 1 11234788889998888888888643
No 124
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=32.99 E-value=37 Score=25.61 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.|.+ .|+++++|++.|
T Consensus 75 ~~l~~~i~~~l~~~lgi~~~rv~I~f 100 (116)
T PTZ00397 75 SSIAAAITKILASHLKVKSERVYIEF 100 (116)
T ss_pred HHHHHHHHHHHHHHhCcCcccEEEEE
Confidence 3677888888866 599999999875
No 125
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=31.92 E-value=2e+02 Score=26.15 Aligned_cols=116 Identities=13% Similarity=0.034 Sum_probs=61.4
Q ss_pred CCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccc
Q 022710 167 EYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQ 246 (293)
Q Consensus 167 ~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~ 246 (293)
+...+++|+.|+.....+...+.+.+.+ -++.++ ..+...- +-.+.+.+...+ -+..+++.... ...|..+.+.
T Consensus 200 ~G~di~iva~G~~~~~a~eAa~~L~~~G--i~v~vi-~~~~l~P-ld~~~i~~~~~~-~~~vv~vEe~~-~~gGlg~~la 273 (327)
T PRK09212 200 EGSDVTIVTFSIQVKLALEAAELLEKEG--ISVEVI-DLRTLRP-LDTETIIESVKK-TNRLVVVEEGW-PFAGVGAEIA 273 (327)
T ss_pred eCCCEEEEEccHHHHHHHHHHHHHHhcC--CcEEEE-EEecCCC-CCHHHHHHHHHh-CCeEEEEcCCC-CCCCHHHHHH
Confidence 4568999999999999988888875333 444443 2222222 222345444332 22223333221 1123344555
Q ss_pred hHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCC-CccCee
Q 022710 247 AAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGV-SSEKIL 290 (293)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv-~~~~I~ 290 (293)
+.+.+.. .........-+||++.+.. ....++..|+ +.++|.
T Consensus 274 ~~l~~~~-~~~~~~~i~r~~~~~~~~~-~~~~le~~~l~~~~~I~ 316 (327)
T PRK09212 274 ALIMKEA-FDYLDAPVERVTGKDVPLP-YAANLEKLALPSEEDII 316 (327)
T ss_pred HHHHHhC-ccccCCCeEEEcCCCccCC-chHHHHHhcCCCHHHHH
Confidence 5554421 1111234566788777665 3367778887 656653
No 126
>PRK06214 sulfite reductase; Provisional
Probab=30.98 E-value=1.5e+02 Score=29.08 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=33.4
Q ss_pred ceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 56 WTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 56 ~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
...++|++++.+++ ++++++|++++. ...|+||.++-|.-.+.
T Consensus 168 p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~----~l~Y~~GD~l~V~P~N~ 215 (530)
T PRK06214 168 PVEATFLSRRRLNKPGSEKETWHVEIDLAGS----GLDYEVGDSLGLFPAND 215 (530)
T ss_pred CEEEEEEeEEEcCCCCCCceEEEEEEecCCC----CCccCCCCEEEEeccCC
Confidence 44788888888875 699999998653 25789999999986543
No 127
>PRK13020 riboflavin synthase subunit alpha; Provisional
Probab=30.73 E-value=2e+02 Score=24.27 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=50.5
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
-++|.++++..+ ..+++++.+.. + .....+|.+|-+. | -..|+.... ++.|.+.+-.. -.-...
T Consensus 9 vg~I~~i~~~~~-~~~l~i~~~~~--~-~~~l~~g~SIavn----G--VcLTV~~v~-----~~~f~~~lipe-Tl~~T~ 72 (206)
T PRK13020 9 TAEVVAIHKKDG-LNTLEIAFPPE--L-LEGLEIGASVAVN----G--VCLTVTKIE-----GDRVFFDVMEE-TLRLTN 72 (206)
T ss_pred EEEEEEEEECCC-cEEEEEEeChh--H-hccCCCCCEEEEC----C--EEEEEEEEC-----CCEEEEEEhHH-HHhhCc
Confidence 467788877554 45677776422 2 2367888877765 2 235776664 55677766432 122234
Q ss_pred hhcCCCCCEEEEEeecC
Q 022710 138 LCGLKKGDVVEISQVMG 154 (293)
Q Consensus 138 L~~l~~Gd~v~v~gP~G 154 (293)
|..+++||.|.++-+.-
T Consensus 73 l~~~~~G~~VNlEral~ 89 (206)
T PRK13020 73 LADLRVGDRVNIERSAK 89 (206)
T ss_pred hhhccCCCEEeeEeccc
Confidence 67799999999977544
No 128
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=30.37 E-value=1.3e+02 Score=26.86 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=17.0
Q ss_pred CCeEEEEEeCcchhHHHHHHHHhhccCCCCcEE
Q 022710 168 YPTVLIFATGSGISPIRSLIESGFSSKERSDVR 200 (293)
Q Consensus 168 ~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~ 200 (293)
.+++++|+||-|-+ ++++++.....+++
T Consensus 77 pk~VLiiGgGdG~t-----lRevlkh~~ve~i~ 104 (282)
T COG0421 77 PKRVLIIGGGDGGT-----LREVLKHLPVERIT 104 (282)
T ss_pred CCeEEEECCCccHH-----HHHHHhcCCcceEE
Confidence 36899999999854 44544434333433
No 129
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=30.26 E-value=36 Score=25.63 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
+.+.+.+.+.|.+ +||+.+||++.|
T Consensus 73 ~~~s~~i~~~l~~~LgIp~~Riyi~f 98 (114)
T PF01187_consen 73 KKYSAAITEFLEEELGIPPDRIYINF 98 (114)
T ss_dssp HHHHHHHHHHHHHHHT--GGGEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcCceEEEE
Confidence 3677888888855 599999999876
No 130
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.87 E-value=1.4e+02 Score=21.74 Aligned_cols=84 Identities=17% Similarity=0.286 Sum_probs=38.5
Q ss_pred eCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc-cccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhc
Q 022710 176 TGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR-MAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK 254 (293)
Q Consensus 176 ~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~-~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~ 254 (293)
|+.-|......++.+.+.+ .++ ++.++.+... --+.+.|+.+ |+.+ +. ++. -..+.........
T Consensus 12 g~~~ipga~e~l~~L~~~g--~~~-~~lTNns~~s~~~~~~~L~~~---Gi~~----~~-~~i--~ts~~~~~~~l~~-- 76 (101)
T PF13344_consen 12 GNEPIPGAVEALDALRERG--KPV-VFLTNNSSRSREEYAKKLKKL---GIPV----DE-DEI--ITSGMAAAEYLKE-- 76 (101)
T ss_dssp TTEE-TTHHHHHHHHHHTT--SEE-EEEES-SSS-HHHHHHHHHHT---TTT------G-GGE--EEHHHHHHHHHHH--
T ss_pred CCCcCcCHHHHHHHHHHcC--CCE-EEEeCCCCCCHHHHHHHHHhc---CcCC----Cc-CEE--EChHHHHHHHHHh--
Confidence 5666666777777764332 233 3334433332 4555566544 6553 11 110 0011122222221
Q ss_pred cCCCCCcEEEEeCChHHHHHHH
Q 022710 255 IFNPQGTGVVLCGQKQMAEEVT 276 (293)
Q Consensus 255 ~~~~~~~~v~vCGp~~~~~~~~ 276 (293)
......+|+.|++.+.++++
T Consensus 77 --~~~~~~v~vlG~~~l~~~l~ 96 (101)
T PF13344_consen 77 --HKGGKKVYVLGSDGLREELR 96 (101)
T ss_dssp --HTTSSEEEEES-HHHHHHHH
T ss_pred --cCCCCEEEEEcCHHHHHHHH
Confidence 13578899999997766644
No 131
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=29.70 E-value=4.4e+02 Score=24.10 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHH-HhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCC
Q 022710 180 ISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW-ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP 258 (293)
Q Consensus 180 IaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l-~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~ 258 (293)
..++..+++++ .-.++.++|. .+ ..+.-.++|.+. ...+.++.....+..... .........+.+ +...
T Consensus 106 ~~ai~d~i~~~----~wk~vailYd-sd-~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~-~~~~d~~~~L~~---ik~~ 175 (370)
T cd06389 106 KGALLSLIEYY----QWDKFAYLYD-SD-RGLSTLQAVLDSAAEKKWQVTAINVGNINND-RKDEAYRSLFQD---LENK 175 (370)
T ss_pred hhHHHHHHHhc----CCcEEEEEec-Cc-hHHHHHHHHHHhhccCCceEEEEEeecCCCc-cchHHHHHHHHH---hccc
Confidence 34555555553 3478899996 33 344434444443 334666543321110000 001112222323 2334
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHcCCCccCee
Q 022710 259 QGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290 (293)
Q Consensus 259 ~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~ 290 (293)
+...+++.++......+.+..++.|+.....|
T Consensus 176 ~~~~Iil~~~~~~~~~il~qa~~~gm~~~~y~ 207 (370)
T cd06389 176 KERRVILDCERDKVNDIVDQVITIGKHVKGYH 207 (370)
T ss_pred cceEEEEECCHHHHHHHHHHHHHhCccccceE
Confidence 56778888999999888899999999766544
No 132
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=29.51 E-value=54 Score=28.45 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=26.3
Q ss_pred CCcEEEEeCC-----hHHHHHHHHHHHHcCCCccCeeccC
Q 022710 259 QGTGVVLCGQ-----KQMAEEVTSIVLAEGVSSEKILKNF 293 (293)
Q Consensus 259 ~~~~v~vCGp-----~~~~~~~~~~L~~~Gv~~~~I~~~~ 293 (293)
....+++.|- .+-.+.+++.|.+.||++++|..+.
T Consensus 81 k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~ 120 (239)
T PRK10834 81 KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY 120 (239)
T ss_pred CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecC
Confidence 3455677774 3556678999999999999998763
No 133
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.15 E-value=4e+02 Score=23.57 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=23.8
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCCccCe
Q 022710 260 GTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289 (293)
Q Consensus 260 ~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I 289 (293)
-..+++++...+...+.+.+++.|++...+
T Consensus 189 pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~ 218 (341)
T cd06341 189 ADAIITVLDAAVCASVLKAVRAAGLTPKVV 218 (341)
T ss_pred CCEEEEecChHHHHHHHHHHHHcCCCCCEE
Confidence 346777888889999999999999876543
No 134
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=28.88 E-value=4.4e+02 Score=23.89 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=50.1
Q ss_pred hHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH-HHhCCc----EEEEEEecCCCCCCccccccchHHHhhhcc
Q 022710 181 SPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE-WESSGV----KIVPVLSQPDGNWSGETGYVQAAFSRAKKI 255 (293)
Q Consensus 181 aP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~-l~~~~i----~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~ 255 (293)
..+..++++. .-.++.++|...+... ...+.+++ ++..++ ++.....-+.. .......+.+ +
T Consensus 143 ~a~~~~l~~~----~w~~vaii~~~~~~g~-~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~-----~~d~~~~l~~---i 209 (377)
T cd06379 143 DVWLEMLRSF----KWNKVILLVSDDHEGR-AAQKRFETLLEEREIEFKIKVEKVVEFEPG-----EKNVTSLLQE---A 209 (377)
T ss_pred HHHHHHHHHc----CCeEEEEEEEcCcchh-HHHHHHHHHHHhcCCccceeeeEEEecCCc-----hhhHHHHHHH---H
Confidence 3344444432 3467888887554322 23344443 333466 44332222111 1122333333 2
Q ss_pred CCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 256 FNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 256 ~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
...+...++++|.......+-+.+++.|+..+
T Consensus 210 k~~~~~vIvl~~~~~~~~~l~~qa~~~g~~~~ 241 (377)
T cd06379 210 KELTSRVILLSASEDDAAVIYRNAGMLNMTGE 241 (377)
T ss_pred hhcCCeEEEEEcCHHHHHHHHHHHHHcCCCCC
Confidence 22345667888888888888889999998765
No 135
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=28.10 E-value=3.3e+02 Score=22.16 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=47.7
Q ss_pred HHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHH-HhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCC-C
Q 022710 182 PIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEW-ESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNP-Q 259 (293)
Q Consensus 182 P~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l-~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~-~ 259 (293)
....+++.+.+.. ..++-++++..........+.+++. +..++++......+... . ...+.+... .... .
T Consensus 111 ~~~~~~~~l~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~--l~~~~~ 182 (269)
T cd01391 111 AGEAAAEYLAEKG-WKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT----E-KGFQALLQL--LKAAPK 182 (269)
T ss_pred HHHHHHHHHHHhC-CceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCc----c-ccHHHHHHH--HhcCCC
Confidence 4455555554433 5788888876542222233333332 22345543332222110 0 111222221 1112 3
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCCccCe
Q 022710 260 GTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289 (293)
Q Consensus 260 ~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I 289 (293)
...+|+|+. .+...+.+++.+.|+..+++
T Consensus 183 ~~~i~~~~~-~~a~~~~~~~~~~g~~~~~~ 211 (269)
T cd01391 183 PDAIFACND-EMAAGALKAAREAGLTPGDI 211 (269)
T ss_pred CCEEEEcCc-hHHHHHHHHHHHcCCCCCCC
Confidence 345555555 88899999999999864333
No 136
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=28.06 E-value=4.7e+02 Score=23.93 Aligned_cols=82 Identities=12% Similarity=0.173 Sum_probs=43.2
Q ss_pred CcEEEEEccCCccccccHHHH-HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCC-CcEEEEeCCh-----
Q 022710 197 SDVRLYYGARNLKRMAYQDKF-KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ-GTGVVLCGQK----- 269 (293)
Q Consensus 197 ~~v~l~~~~r~~~~~~~~~~l-~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~-~~~v~vCGp~----- 269 (293)
.++.++|...+...- ..+.+ +.++..++++.....-+.+. ......+.+ +.... ...+++|+..
T Consensus 133 ~~vaii~~~~~~~~~-~~~~l~~~l~~~gi~v~~~~~~~~~~-----~d~~~~L~~---lk~~~~~~viv~~~~~~~~~~ 203 (382)
T cd06371 133 AHVAIVSSPQDIWVE-TAQKLASALRAHGLPVGLVTSMGPDE-----KGAREALKK---VRSADRVRVVIMCMHSVLIGG 203 (382)
T ss_pred eEEEEEEecccchHH-HHHHHHHHHHHCCCcEEEEEEecCCH-----HHHHHHHHH---HhcCCCcEEEEEEeeccccCc
Confidence 678888776543221 22333 33444577765543322111 123333333 22223 3567889876
Q ss_pred HHHHHHHHHHHHcCCCcc
Q 022710 270 QMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 270 ~~~~~~~~~L~~~Gv~~~ 287 (293)
.....+.+.+++.|+...
T Consensus 204 ~~~~~i~~qa~~~Gm~~~ 221 (382)
T cd06371 204 EEQRLLLETALEMGMTDG 221 (382)
T ss_pred HHHHHHHHHHHHcCCcCC
Confidence 455677778888898753
No 137
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.04 E-value=3.7e+02 Score=22.67 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=33.6
Q ss_pred eEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEE
Q 022710 170 TVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPV 230 (293)
Q Consensus 170 ~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~ 230 (293)
++++++.|.| +-+-+++++.....-..+|..+++.+ .+.+-. +.-+..|+....+
T Consensus 2 ki~VlaSG~G-SNlqaiida~~~~~~~a~i~~Visd~--~~A~~l---erA~~~gIpt~~~ 56 (200)
T COG0299 2 KIAVLASGNG-SNLQAIIDAIKGGKLDAEIVAVISDK--ADAYAL---ERAAKAGIPTVVL 56 (200)
T ss_pred eEEEEEeCCc-ccHHHHHHHHhcCCCCcEEEEEEeCC--CCCHHH---HHHHHcCCCEEEe
Confidence 5788888888 45777888775333346788888777 333333 3333346655444
No 138
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=28.03 E-value=48 Score=25.11 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCCccCeeccC
Q 022710 273 EEVTSIVLAEGVSSEKILKNF 293 (293)
Q Consensus 273 ~~~~~~L~~~Gv~~~~I~~~~ 293 (293)
..+.+.|.+.|||+++|...|
T Consensus 77 ~gIa~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 77 DGIAEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp SHHHHHHHHTT--GGGEEETT
T ss_pred hHHHHHHHHcCCCHHHEEEcc
Confidence 456778899999999998765
No 139
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.85 E-value=4.4e+02 Score=23.53 Aligned_cols=110 Identities=14% Similarity=0.087 Sum_probs=60.0
Q ss_pred CeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccch
Q 022710 169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQA 247 (293)
Q Consensus 169 ~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~ 247 (293)
.+.++-.+.+-......+++.+.. ....+|-++|.......- ..+.++ .+.+.|+++.....-+.. ...+..
T Consensus 112 ~~~~fr~~~~~~~~~~~~~~~~~~-~~~~~v~il~~d~~~g~~-~~~~~~~~l~~~G~~vv~~~~~~~~-----~~D~s~ 184 (347)
T cd06336 112 NPLTFRVPPIYNVYGVPFLAYAKK-PGGKKVALLGPNDAYGQP-WVAAYKAAWEAAGGKVVSEEPYDPG-----TTDFSP 184 (347)
T ss_pred CceEEEecCCchhHHHHHHHHHhh-cCCceEEEEccCCchhHH-HHHHHHHHHHHcCCEEeeecccCCC-----CcchHH
Confidence 355666666666666666666543 345788888865433222 222332 333446666443222211 112233
Q ss_pred HHHhhhccCCCCCcEEEEeCChH-HHHHHHHHHHHcCCCccC
Q 022710 248 AFSRAKKIFNPQGTGVVLCGQKQ-MAEEVTSIVLAEGVSSEK 288 (293)
Q Consensus 248 ~~~~~~~~~~~~~~~v~vCGp~~-~~~~~~~~L~~~Gv~~~~ 288 (293)
.+.+ +...+...+|+|+... ..-.+.+.+++.|+....
T Consensus 185 ~i~~---i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 223 (347)
T cd06336 185 IVTK---LLAEKPDVIFLGGPSPAPAALVIKQARELGFKGGF 223 (347)
T ss_pred HHHH---HHhcCCCEEEEcCCCchHHHHHHHHHHHcCCCccE
Confidence 3333 1123345688888877 888888889998987543
No 140
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.84 E-value=1.5e+02 Score=23.62 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=45.2
Q ss_pred EEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHh
Q 022710 172 LIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSR 251 (293)
Q Consensus 172 vlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~ 251 (293)
|+|.||+|-.--. +++++.+.+ .+ +.-.+|+.+.... ..++++....... . +.+.+
T Consensus 1 I~V~GatG~vG~~-l~~~L~~~~--~~--V~~~~R~~~~~~~--------~~~~~~~~~d~~d----------~-~~~~~ 56 (183)
T PF13460_consen 1 ILVFGATGFVGRA-LAKQLLRRG--HE--VTALVRSPSKAED--------SPGVEIIQGDLFD----------P-DSVKA 56 (183)
T ss_dssp EEEETTTSHHHHH-HHHHHHHTT--SE--EEEEESSGGGHHH--------CTTEEEEESCTTC----------H-HHHHH
T ss_pred eEEECCCChHHHH-HHHHHHHCC--CE--EEEEecCchhccc--------ccccccceeeehh----------h-hhhhh
Confidence 5788888877653 667666444 44 4445566553221 3355553331111 1 22222
Q ss_pred hhccCCCCCcEEEEeCC----hHHHHHHHHHHHHcCCC
Q 022710 252 AKKIFNPQGTGVVLCGQ----KQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 252 ~~~~~~~~~~~v~vCGp----~~~~~~~~~~L~~~Gv~ 285 (293)
. . ..-+..+++.|+ ...++.+.+++++.|++
T Consensus 57 a--l-~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 57 A--L-KGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp H--H-TTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred h--h-hhcchhhhhhhhhcccccccccccccccccccc
Confidence 1 1 123444444443 55567777778777764
No 141
>PHA02099 hypothetical protein
Probab=27.68 E-value=1.1e+02 Score=21.00 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=31.8
Q ss_pred eEEEEEEEe-CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCc
Q 022710 122 AFEFLVKSV-AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGS 178 (293)
Q Consensus 122 ~~~~~Vk~~-~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~Gt 178 (293)
+|.++||.. .|+.-+++.+|+.-++| ||.|.-+.+-+. -..-.+++-|.|-
T Consensus 2 efkiiv~s~~~gpid~yi~~lkn~~rv---~pg~~emhilr~---~~g~diifha~gy 53 (84)
T PHA02099 2 EFKIIVKSSAKGPVDQYIANLKNAGRV---GPGESEMHILRN---FEGVDIVFHAEGY 53 (84)
T ss_pred ceEEEEecccCCCHHHHHHhhhccCcc---CCCCcEEEEEee---cCCccEEEEcCCC
Confidence 367788754 48999999998877766 455543322221 1445566666654
No 142
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=27.63 E-value=4.5e+02 Score=23.59 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=45.1
Q ss_pred CCcEEEEEccCCccccccHHHHHH-HHhCCcE--EEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHH
Q 022710 196 RSDVRLYYGARNLKRMAYQDKFKE-WESSGVK--IVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMA 272 (293)
Q Consensus 196 ~~~v~l~~~~r~~~~~~~~~~l~~-l~~~~i~--~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~ 272 (293)
-.++.++|...+... -+.+.+++ ++..+++ +.....-+... .......+.+ ....+...++++|+....
T Consensus 136 w~~vaii~~~~~~g~-~~~~~l~~~l~~~g~~~~i~~~~~~~~~~----~~~~~~~l~~---l~~~~~~vivl~~~~~~~ 207 (362)
T cd06367 136 WHQFSVVTSRDPGYR-DFLDRVETTLEESFVGWEFQLVLTLDLSD----DDGDARLLRQ---LKKLESRVILLYCSKEEA 207 (362)
T ss_pred CeEEEEEEEcCcccH-HHHHHHHHHHHhcccceeeeeeEEeccCC----CcchHHHHHH---HHhcCCcEEEEeCCHHHH
Confidence 467888888665432 23444543 3334655 33332221111 0011222222 111234578888888888
Q ss_pred HHHHHHHHHcCCCccC
Q 022710 273 EEVTSIVLAEGVSSEK 288 (293)
Q Consensus 273 ~~~~~~L~~~Gv~~~~ 288 (293)
..+.+.+.+.|+....
T Consensus 208 ~~il~~a~~~g~~~~~ 223 (362)
T cd06367 208 ERIFEAAASLGLTGPG 223 (362)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 8888888888987543
No 143
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=27.57 E-value=4e+02 Score=23.28 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=25.3
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHcCCCccC
Q 022710 258 PQGTGVVLCGQKQMAEEVTSIVLAEGVSSEK 288 (293)
Q Consensus 258 ~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~ 288 (293)
.....|++|++....+.+...+.+.|+....
T Consensus 178 ~~~rvvil~~~~~~~~~~l~~a~~~~~~~~~ 208 (348)
T PF01094_consen 178 SGARVVILCSSPEDARQFLEAAYELGMTSGD 208 (348)
T ss_dssp TTTSEEEEESBHHHHHHHHHHHHHTTTSSTT
T ss_pred ccceeeeeecccccccccccchhhhhccccc
Confidence 4667899999999999999999888884433
No 144
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=27.18 E-value=1.2e+02 Score=23.60 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCcEEEEeCChH------HHHHHHHHHHHcCCCccCeecc
Q 022710 259 QGTGVVLCGQKQ------MAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 259 ~~~~v~vCGp~~------~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
....+++||... -.+.+.+.+.+.|++.++|+.+
T Consensus 34 ~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e 73 (150)
T cd06259 34 PAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLE 73 (150)
T ss_pred CCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeec
Confidence 356777787753 5567788888889988888764
No 145
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=27.09 E-value=56 Score=29.42 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=24.5
Q ss_pred cCCCCCeEEEEEEcCCCceeeEEecCCCCC
Q 022710 87 SHTRAGQYLQLRVVDVGKPTFLAIASPPSF 116 (293)
Q Consensus 87 ~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~ 116 (293)
..|+|||||...-.+.+.|+.|-+.+....
T Consensus 97 kgfk~Gd~VIp~~a~lGtW~t~~v~~e~~L 126 (354)
T KOG0025|consen 97 KGFKPGDWVIPLSANLGTWRTEAVFSESDL 126 (354)
T ss_pred CccCCCCeEeecCCCCccceeeEeecccce
Confidence 458999999998888888998888776643
No 146
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=26.38 E-value=3.4e+02 Score=24.73 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=63.9
Q ss_pred CCCeEEEEEeCcchhHHHHHHHHhhcc--C--CCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEe-cCCCCCCcc
Q 022710 167 EYPTVLIFATGSGISPIRSLIESGFSS--K--ERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLS-QPDGNWSGE 241 (293)
Q Consensus 167 ~~~~ivlia~GtGIaP~~sll~~~~~~--~--~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s-~~~~~~~~~ 241 (293)
..+..-.|+|++ |+..+-+...+. . +..++.++++.|.-.- ...+-++++..+|++-.+++. -|.-+.+ .
T Consensus 58 ~~~~Y~~igg~s---PL~~~T~~q~~~L~~~L~~~~~~V~~amry~~P-~i~~~v~~l~~~gv~~iv~~pLyPqyS~s-T 132 (320)
T COG0276 58 VAKNYESIGGKS---PLNVITRAQAAALEERLDLPDFKVYLAMRYGPP-FIEEAVEELKKDGVERIVVLPLYPQYSSS-T 132 (320)
T ss_pred HHHHHHHhcCCC---ccHHHHHHHHHHHHHHhCCCCccEEEeecCCCC-cHHHHHHHHHHcCCCeEEEEECCcccccc-c
Confidence 344556788877 888777766431 1 1337889999887665 345788889888874333333 2322222 2
Q ss_pred ccccchHHHhhhccCCCCCcEEEEeCC-------hHHHHHHHHHHHHcCCCccCeecc
Q 022710 242 TGYVQAAFSRAKKIFNPQGTGVVLCGQ-------KQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 242 ~g~v~~~~~~~~~~~~~~~~~v~vCGp-------~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
.|...+.+.+........-..-++..= ..|.+.+++.+.+.+.+...+.++
T Consensus 133 t~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~~~~~~~~llfS 190 (320)
T COG0276 133 TGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAKHPRDDDVLLFS 190 (320)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 233333333321111111122233222 456667777777776444554443
No 147
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=26.34 E-value=4.6e+02 Score=23.20 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=44.7
Q ss_pred CCCcEEEEEccCCccccccHHHH-HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHH
Q 022710 195 ERSDVRLYYGARNLKRMAYQDKF-KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273 (293)
Q Consensus 195 ~~~~v~l~~~~r~~~~~~~~~~l-~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~ 273 (293)
.-+++.++|...+..... .+.+ +.++..|+++.....-+... ........+.+ +...+...+++++......
T Consensus 159 ~~~~v~~l~~~~~~g~~~-~~~~~~~~~~~gi~v~~~~~~~~~~---~~~d~~~~l~~---l~~~~~~vvv~~~~~~~~~ 231 (348)
T cd06350 159 GWTWVGLVYSDDDYGRSG-LSDLEEELEKNGICIAFVEAIPPSS---TEEDIKRILKK---LKSSTARVIVVFGDEDDAL 231 (348)
T ss_pred CCeEEEEEEecchhHHHH-HHHHHHHHHHCCCcEEEEEEccCCC---cHHHHHHHHHH---HHhCCCcEEEEEeCcHHHH
Confidence 346788888754433222 3333 34445577765543332210 00112222222 1122335677788888888
Q ss_pred HHHHHHHHcCCC
Q 022710 274 EVTSIVLAEGVS 285 (293)
Q Consensus 274 ~~~~~L~~~Gv~ 285 (293)
.+.+.+++.|+.
T Consensus 232 ~~~~~a~~~g~~ 243 (348)
T cd06350 232 RLFCEAYKLGMT 243 (348)
T ss_pred HHHHHHHHhCCC
Confidence 888888899983
No 148
>PF13289 SIR2_2: SIR2-like domain
Probab=26.26 E-value=2.7e+02 Score=20.98 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=24.5
Q ss_pred CCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 022710 168 YPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK 209 (293)
Q Consensus 168 ~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~ 209 (293)
.+.+++||-|-+=..+..+++.+.......+-.+++...+..
T Consensus 86 ~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 86 SKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD 127 (143)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc
Confidence 446777766665566777777776544333334455555444
No 149
>PRK13054 lipid kinase; Reviewed
Probab=25.46 E-value=4.5e+02 Score=23.27 Aligned_cols=76 Identities=11% Similarity=0.077 Sum_probs=39.9
Q ss_pred CcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHH
Q 022710 197 SDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVT 276 (293)
Q Consensus 197 ~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~ 276 (293)
.++.++|.-+....-.+.+.+..+...++++....++... ...+...+. . ......+++||-.+.+.++.
T Consensus 4 ~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~-------~a~~~a~~~--~-~~~~d~vvv~GGDGTl~evv 73 (300)
T PRK13054 4 PKSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKG-------DAARYVEEA--L-ALGVATVIAGGGDGTINEVA 73 (300)
T ss_pred ceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCC-------cHHHHHHHH--H-HcCCCEEEEECCccHHHHHH
Confidence 3555666544322223334444455567776665555422 233333221 1 11235678888888888888
Q ss_pred HHHHHc
Q 022710 277 SIVLAE 282 (293)
Q Consensus 277 ~~L~~~ 282 (293)
+.|...
T Consensus 74 ~~l~~~ 79 (300)
T PRK13054 74 TALAQL 79 (300)
T ss_pred HHHHhh
Confidence 777643
No 150
>PRK11914 diacylglycerol kinase; Reviewed
Probab=25.41 E-value=3.5e+02 Score=23.98 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=41.2
Q ss_pred CCcEEEEEccCCccc---cccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHH
Q 022710 196 RSDVRLYYGARNLKR---MAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMA 272 (293)
Q Consensus 196 ~~~v~l~~~~r~~~~---~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~ 272 (293)
..++.++|.-.+-.. -.+.+-.+.++..++++..+.++.. +...+...+. .......+++||-.+.+
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~-------~~~~~~a~~~---~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA-------HDARHLVAAA---LAKGTDALVVVGGDGVI 77 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH-------HHHHHHHHHH---HhcCCCEEEEECCchHH
Confidence 456667666443321 1233333445556777766655542 1223332221 11223468888888888
Q ss_pred HHHHHHHHHcC
Q 022710 273 EEVTSIVLAEG 283 (293)
Q Consensus 273 ~~~~~~L~~~G 283 (293)
.++.+.|...+
T Consensus 78 ~evv~~l~~~~ 88 (306)
T PRK11914 78 SNALQVLAGTD 88 (306)
T ss_pred HHHhHHhccCC
Confidence 88887775433
No 151
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.78 E-value=5e+02 Score=23.15 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=45.5
Q ss_pred HHHHHhhccCCCCcEEEEEccCCccccccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEE
Q 022710 185 SLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGV 263 (293)
Q Consensus 185 sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v 263 (293)
.+.+.+.+.....++-++|....... ...+.++ .++..++++.....-+.. .......+.+. .......+
T Consensus 127 ~~a~~~~~~~~~~~v~ii~~~~~~g~-~~~~~~~~~~~~~G~~v~~~~~~~~~-----~~d~s~~i~~i---~~~~~d~v 197 (347)
T cd06335 127 FLVDEAVKRGGFKKVALLLDNTGWGR-SNRKDLTAALAARGLKPVAVEWFNWG-----DKDMTAQLLRA---KAAGADAI 197 (347)
T ss_pred HHHHHHHHhcCCCeEEEEeccCchhh-hHHHHHHHHHHHcCCeeEEEeeecCC-----CccHHHHHHHH---HhCCCCEE
Confidence 44454443344578888887644333 2333443 344457776543222211 11122323221 11123345
Q ss_pred EEeCChHHHHHHHHHHHHcCCCc
Q 022710 264 VLCGQKQMAEEVTSIVLAEGVSS 286 (293)
Q Consensus 264 ~vCGp~~~~~~~~~~L~~~Gv~~ 286 (293)
+++|.....-.+.+.+++.|++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g~~~ 220 (347)
T cd06335 198 IIVGNGPEGAQIANGMAKLGWKV 220 (347)
T ss_pred EEEecChHHHHHHHHHHHcCCCC
Confidence 55566555555677788888853
No 152
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=24.54 E-value=2.2e+02 Score=28.28 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=33.5
Q ss_pred ceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 56 WTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 56 ~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
...++|+.++.++. +++++.|++++. ...|+||.++-|...+.
T Consensus 234 p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~----~~~Y~~GD~l~V~P~N~ 281 (597)
T TIGR01931 234 PFRAEVLENQKITGRNSKKDVRHIEIDLEGS----GLHYEPGDALGVWYKND 281 (597)
T ss_pred CeEEEEEeeEecCCCCCCceEEEEEEecCCC----CCccCCCCEEEEEeCCC
Confidence 45688888887763 799999998643 25799999999987644
No 153
>PF08877 MepB: MepB protein; InterPro: IPR011235 This is a family of uncharacterised bacterial proteins.
Probab=24.41 E-value=2.7e+02 Score=21.55 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=30.7
Q ss_pred CCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC-CCceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710 67 AAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-VGKPTFLAIASPPSFASASGAFEFLVKS 129 (293)
Q Consensus 67 ~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~-~~~~r~ySi~s~p~~~~~~~~~~~~Vk~ 129 (293)
+++..+++|+... ..-++||||.+.=-+ .+...+|+..+.+ +.+-+.|..
T Consensus 14 l~~~~~~~R~AK~-------TP~K~G~FVt~Wkr~~~g~~~Pf~~~d~~------d~liI~v~d 64 (123)
T PF08877_consen 14 LNGKTIRFRLAKK-------TPKKPGQFVTFWKRDENGKNQPFDEEDSF------DFLIINVID 64 (123)
T ss_pred ECCcEEEEEeccc-------CCCcccEEEEEEEECCCCCccCCccccCC------CEEEEEEEe
Confidence 3444567776532 345999999997654 3566777765554 335555554
No 154
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=24.36 E-value=1.4e+02 Score=24.98 Aligned_cols=57 Identities=21% Similarity=0.231 Sum_probs=39.2
Q ss_pred CCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhh-----cCCCCCEEEEEee
Q 022710 91 AGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLC-----GLKKGDVVEISQV 152 (293)
Q Consensus 91 pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~-----~l~~Gd~v~v~gP 152 (293)
-|+.+.+++..-+..++=.+ ..+. .-.+.++|-+++-.++.+.. .+++||++.+.+-
T Consensus 25 ~g~~~lvrC~eCG~V~~~~i-~~~k----~~~v~viVS~~~~S~~~~vel~~gE~l~vGDei~vd~e 86 (201)
T COG1326 25 RGREPLVRCEECGTVHPAII-KTPK----PVRVRVIVSRHEESFTKEVELDPGETLKVGDEIEVDGE 86 (201)
T ss_pred cCCceEEEccCCCcEeecee-eccc----cceEEEEEecCCcccceeEecCCCCeEecCCEEEEcCC
Confidence 37788999988777654333 3333 67888999888546666542 2788888888663
No 155
>PLN02741 riboflavin synthase
Probab=24.26 E-value=3.4e+02 Score=22.69 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=48.3
Q ss_pred eeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhh
Q 022710 59 TPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVL 138 (293)
Q Consensus 59 ~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L 138 (293)
++|.+++...++..+++++ +. .+ ..+...|..|-+. + -..|+.... ++.|.+.+-.. -.-..-|
T Consensus 10 G~I~~i~~~~~~~~~l~i~-~~--~~-~~~l~~G~SIAvn----G--vCLTV~~~~-----~~~f~vdvipE-Tl~~T~L 73 (194)
T PLN02741 10 GEVKSLGVTDDGGFDLKIE-AS--TV-LDGVKLGDSIAVN----G--TCLTVTEFD-----GDEFTVGLAPE-TLRKTSL 73 (194)
T ss_pred EEEEEEEecCCCcEEEEEE-cc--hh-hcccccCCEEEEC----c--EEEEEEEEC-----CCEEEEEEEHH-HhhhCcc
Confidence 5677777623355677776 22 12 2467888877765 2 236776665 55677766533 1222246
Q ss_pred hcCCCCCEEEEEeec
Q 022710 139 CGLKKGDVVEISQVM 153 (293)
Q Consensus 139 ~~l~~Gd~v~v~gP~ 153 (293)
..+++||.|.++-+.
T Consensus 74 ~~l~~G~~VNLEral 88 (194)
T PLN02741 74 GELKTGSLVNLERAL 88 (194)
T ss_pred ccCCCCCEEeeccCC
Confidence 779999999996643
No 156
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=23.50 E-value=4.5e+02 Score=22.87 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=33.5
Q ss_pred EEEEeCc-chhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHH--hCCcEEEEEEec
Q 022710 172 LIFATGS-GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWE--SSGVKIVPVLSQ 233 (293)
Q Consensus 172 vlia~Gt-GIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~--~~~i~~~~~~s~ 233 (293)
++|.||- ||. +++++++.. ...-..++..+|+.+.. .++++.|. +.++++..+.-.
T Consensus 6 v~ItGaNRGIG--lgLVk~llk--~~~i~~iiat~r~~e~a--~~~l~~k~~~d~rvHii~Ldvt 64 (249)
T KOG1611|consen 6 VFITGANRGIG--LGLVKELLK--DKGIEVIIATARDPEKA--ATELALKSKSDSRVHIIQLDVT 64 (249)
T ss_pred EEEeccCcchh--HHHHHHHhc--CCCcEEEEEecCChHHh--hHHHHHhhccCCceEEEEEecc
Confidence 4555543 664 457777752 23445677888888775 55666664 346776665433
No 157
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=23.46 E-value=91 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=21.3
Q ss_pred EEEeCC---hHHHHHHHHHHHHcCCCccCeeccC
Q 022710 263 VVLCGQ---KQMAEEVTSIVLAEGVSSEKILKNF 293 (293)
Q Consensus 263 v~vCGp---~~~~~~~~~~L~~~Gv~~~~I~~~~ 293 (293)
-|..|+ ..-++.+.+.|.+.|+.++++++.|
T Consensus 68 Hy~~GN~ka~rR~~~lke~l~elgie~eRv~~~w 101 (132)
T COG1908 68 HYISGNYKAKRRMELLKELLKELGIEPERVRVLW 101 (132)
T ss_pred eeeccchHHHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 344455 4556777788888888888887643
No 158
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=23.27 E-value=2.6e+02 Score=26.52 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=33.6
Q ss_pred CCCeEEEEEeCc-chhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEE
Q 022710 167 EYPTVLIFATGS-GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVP 229 (293)
Q Consensus 167 ~~~~ivlia~Gt-GIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~ 229 (293)
..+++++|+||- |+=-...+.+. ..+|++++-....+-.....+++.+...|+++++
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~------G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRL------GAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc------CCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 346899998884 44433333332 2468888865433323455566777777777653
No 159
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=23.19 E-value=4.4e+02 Score=21.97 Aligned_cols=90 Identities=16% Similarity=0.083 Sum_probs=55.0
Q ss_pred eCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe-CCcchHhhhc----
Q 022710 66 PAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-AGSTAEVLCG---- 140 (293)
Q Consensus 66 ~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~-~G~~s~~L~~---- 140 (293)
...+..++++|...-.+++. +.|+|=|.-.--.|++...-+|...+..+ ...+...+-.+ |+..+.|+.+
T Consensus 59 ~~~~R~I~V~F~a~~~~~lp-W~F~P~q~~v~V~pGE~~~~~y~a~N~sd----~~i~g~A~~nV~P~~a~~YF~KieCF 133 (188)
T PRK05089 59 VDLSRTITVEFDANVNGGLP-WEFKPEQRSVDVHPGELNLVFYEAENLSD----RPIVGQAIPSVTPGQAGAYFNKIECF 133 (188)
T ss_pred ccCCcEEEEEEeccCCCCCC-ceEEeeeeEEEEcCCCeEEEEEEEECCCC----CcEEEEEecccCHHHHhhhccceeee
Confidence 34456778888765444443 57888885544445555556688877765 45555555443 3445555432
Q ss_pred ------CCCCCEEEEEeecCCCccccCCCC
Q 022710 141 ------LKKGDVVEISQVMGRGFAVDRIQP 164 (293)
Q Consensus 141 ------l~~Gd~v~v~gP~G~~f~l~~~~p 164 (293)
|++|+++++-. .|.+|+..|
T Consensus 134 CF~eQ~L~pgE~~~mPV----~F~IDP~i~ 159 (188)
T PRK05089 134 CFTQQTLQPGETREMPV----VFYVDPDLP 159 (188)
T ss_pred cccCcccCCCCeEecCE----EEEECCCcc
Confidence 78999998733 377776443
No 160
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=23.13 E-value=1.6e+02 Score=27.06 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 69 ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 69 ~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
.++++++|++++. ...|+||.++.|.-.+.
T Consensus 15 ~~~~~i~~~~~~~----~~~y~~GD~l~i~p~N~ 44 (360)
T cd06199 15 KETRHIELDLEGS----GLSYEPGDALGVYPTND 44 (360)
T ss_pred ccEEEEEEeCCCC----CCcccCCCEEEEEcCCC
Confidence 4699999998653 24789999999987644
No 161
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=23.06 E-value=85 Score=28.26 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=21.5
Q ss_pred EEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 022710 171 VLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208 (293)
Q Consensus 171 ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~ 208 (293)
||+|+||+|.+-++.=+++. +..+++.+..+-+.
T Consensus 1 Ivvl~GGtG~~~ll~gL~~~----~~~~lt~IV~~~Dd 34 (300)
T PF01933_consen 1 IVVLGGGTGLSKLLRGLKRV----PPHDLTAIVNTADD 34 (300)
T ss_dssp EEEEE-SCHHHHHHHHHTTS-----SEEEEEEE--CT-
T ss_pred CEEEeCcccHHHHHHHHHHh----CCCCeEEEEECccC
Confidence 68999999999988777765 33555655554433
No 162
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=23.00 E-value=4.5e+02 Score=21.97 Aligned_cols=88 Identities=16% Similarity=0.259 Sum_probs=46.0
Q ss_pred CCCeEEEEEeCc-chhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCcccccc
Q 022710 167 EYPTVLIFATGS-GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYV 245 (293)
Q Consensus 167 ~~~~ivlia~Gt-GIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v 245 (293)
..+++++|+||- |..-+..+++. ..+|+++- .+ +.++++.+...+ ++.+. .+. +-
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~------ga~VtVvs--p~-----~~~~l~~l~~~~-~i~~~-~~~---------~~ 63 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA------GAQLRVIA--EE-----LESELTLLAEQG-GITWL-ARC---------FD 63 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC------CCEEEEEc--CC-----CCHHHHHHHHcC-CEEEE-eCC---------CC
Confidence 456888887775 66666666654 25676552 22 226777776543 23222 121 11
Q ss_pred chHHHhhhccCCCCCcEEEEe-CChHHHHHHHHHHHHcCCCc
Q 022710 246 QAAFSRAKKIFNPQGTGVVLC-GQKQMAEEVTSIVLAEGVSS 286 (293)
Q Consensus 246 ~~~~~~~~~~~~~~~~~v~vC-Gp~~~~~~~~~~L~~~Gv~~ 286 (293)
...+ . ....+++| |.+.....+...+++.|+.-
T Consensus 64 ~~dl-~-------~~~lVi~at~d~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 64 ADIL-E-------GAFLVIAATDDEELNRRVAHAARARGVPV 97 (205)
T ss_pred HHHh-C-------CcEEEEECCCCHHHHHHHHHHHHHcCCEE
Confidence 1111 1 22334444 44457777777777777643
No 163
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=22.78 E-value=4.8e+02 Score=22.59 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=55.1
Q ss_pred eCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe-CCcchHhhhc----
Q 022710 66 PAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-AGSTAEVLCG---- 140 (293)
Q Consensus 66 ~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~-~G~~s~~L~~---- 140 (293)
...+..++++|...-.+++ .+.|+|=|--.--.|++...-+|...+..+ ...+...+-.+ |+..+.|+.+
T Consensus 103 ~~~~R~I~V~F~a~v~~~l-pW~F~P~q~~v~V~pGE~~lv~Y~a~N~sd----~~i~G~A~ynV~P~~Ag~YFnKieCF 177 (232)
T PTZ00128 103 PVPKRLIKIRFLADTGSTM-PWEFEPLQKEVEVLPGETALAFYRAKNRSD----KPVIGVATYHIAPPEAGLYFNKIQCF 177 (232)
T ss_pred ccCceEEEEEEeccCCCCC-CceEEeeeeEEEEcCCCeEEEEEEEECCCC----CcEEEEEecccCHHHHhhhccceeee
Confidence 3445677777775434444 357888885544446555556788887765 55566655544 3445554432
Q ss_pred ------CCCCCEEEEEeecCCCccccCCCC
Q 022710 141 ------LKKGDVVEISQVMGRGFAVDRIQP 164 (293)
Q Consensus 141 ------l~~Gd~v~v~gP~G~~f~l~~~~p 164 (293)
|++|+++++-. .|.+|+..+
T Consensus 178 CF~eQ~L~pgE~~~MPV----~F~IDP~i~ 203 (232)
T PTZ00128 178 CFEEQRLNPHEEVDMPV----FFYIDPDIL 203 (232)
T ss_pred cccccccCCCCeEecCE----EEEECCCCC
Confidence 78999998733 377776443
No 164
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.69 E-value=3.1e+02 Score=19.98 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=20.3
Q ss_pred CCcEEEEeCChHHHHHHHHHHHHcCC
Q 022710 259 QGTGVVLCGQKQMAEEVTSIVLAEGV 284 (293)
Q Consensus 259 ~~~~v~vCGp~~~~~~~~~~L~~~Gv 284 (293)
.-..+++|.|...-.++...+.+.|.
T Consensus 62 ~~D~V~I~tp~~~h~~~~~~~l~~g~ 87 (120)
T PF01408_consen 62 DVDAVIIATPPSSHAEIAKKALEAGK 87 (120)
T ss_dssp TESEEEEESSGGGHHHHHHHHHHTTS
T ss_pred cCCEEEEecCCcchHHHHHHHHHcCC
Confidence 34578888988888888877777776
No 165
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=22.69 E-value=4.5e+02 Score=21.89 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=50.1
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
-++|.++++..+ ..+++++.+. .+ ....+|..|.+. | -.+|+.... ++.|.+.+-...=.. .-
T Consensus 9 ~g~V~~i~~~~~-~~~~~i~~~~--~~--~~l~~g~SIAvn----G--vcLTV~~~~-----~~~f~~~l~~eTl~~-T~ 71 (194)
T PRK09289 9 VGTVESIEPKGD-GLRLTIEAGK--LL--SDLKLGDSIAVN----G--VCLTVTEID-----GDSFTVDVSPETLRR-TN 71 (194)
T ss_pred EEEEEEEEEcCC-cEEEEEEcCc--cc--cccccCCEEEEc----c--EEEEEEEEc-----CCEEEEEEEHHHhhh-Cc
Confidence 366777777654 4567777642 22 236888877765 2 236776664 567877775432122 23
Q ss_pred hhcCCCCCEEEEEeecC
Q 022710 138 LCGLKKGDVVEISQVMG 154 (293)
Q Consensus 138 L~~l~~Gd~v~v~gP~G 154 (293)
|..+++||.|.++.+.-
T Consensus 72 l~~l~~G~~VNLEra~~ 88 (194)
T PRK09289 72 LGDLKVGDRVNLERALR 88 (194)
T ss_pred hhhccCCCEEEEeEccc
Confidence 57799999999977544
No 166
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=22.67 E-value=2.5e+02 Score=23.09 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=37.2
Q ss_pred cHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCee
Q 022710 213 YQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKIL 290 (293)
Q Consensus 213 ~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~ 290 (293)
.++-|.++...++++.++ |+-. ..++...... =+..++.-.-++|...++++|++.+++.+++.
T Consensus 51 ~~~W~~e~k~~gi~v~vv-SNn~------e~RV~~~~~~-------l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vv 114 (175)
T COG2179 51 LRAWLAELKEAGIKVVVV-SNNK------ESRVARAAEK-------LGVPFIYRAKKPFGRAFRRALKEMNLPPEEVV 114 (175)
T ss_pred HHHHHHHHHhcCCEEEEE-eCCC------HHHHHhhhhh-------cCCceeecccCccHHHHHHHHHHcCCChhHEE
Confidence 444555555668887666 3321 1233333222 12334444557788888899988888887654
No 167
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=22.45 E-value=6.1e+02 Score=23.25 Aligned_cols=93 Identities=10% Similarity=0.126 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH-HHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCC
Q 022710 181 SPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE-WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ 259 (293)
Q Consensus 181 aP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~-l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~ 259 (293)
.++..+++++ .-+++.++|... +.+.-.++|.+ +...+.++...-....+ .......+.+ +...+
T Consensus 113 ~a~~~~i~~~----~wk~vaiiYd~~--~~~~~lq~l~~~~~~~g~~v~~~~~~~~~-----~~d~~~~L~~---ik~~~ 178 (371)
T cd06388 113 GALLSLLDHY----EWNRFVFLYDTD--RGYSILQAIMEKAGQNGWQVSAICVENFN-----DASYRRLLED---LDRRQ 178 (371)
T ss_pred hHHHHHHHhc----CceEEEEEecCC--ccHHHHHHHHHhhHhcCCeeeeEEeccCC-----cHHHHHHHHH---hcccc
Confidence 3444444443 346788888533 23322334433 33346665442222110 0112222333 33345
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 260 GTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 260 ~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
...+++.+++.+...+.+..++.|+...
T Consensus 179 ~~~iil~~~~~~~~~il~qa~~~gm~~~ 206 (371)
T cd06388 179 EKKFVIDCEIERLQNILEQIVSVGKHVK 206 (371)
T ss_pred cEEEEEECCHHHHHHHHHHHHhcCcccc
Confidence 5678888899999999999999998665
No 168
>PRK00228 hypothetical protein; Validated
Probab=22.29 E-value=3.2e+02 Score=22.71 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=60.4
Q ss_pred ecCCCCCCCCCCeEEEEEEEeCC-cchHhhhcCCC---------CCEEEEEeecCC--CccccCCCCCCCCCeEEEEEeC
Q 022710 110 IASPPSFASASGAFEFLVKSVAG-STAEVLCGLKK---------GDVVEISQVMGR--GFAVDRIQPPDEYPTVLIFATG 177 (293)
Q Consensus 110 i~s~p~~~~~~~~~~~~Vk~~~G-~~s~~L~~l~~---------Gd~v~v~gP~G~--~f~l~~~~p~~~~~~ivlia~G 177 (293)
|+.... +|.+-|++.+..+ ...+.+.++.. ...|.+.||... .|.+.... .....-+-|..|
T Consensus 33 l~eH~~----~Ga~GlIlNrp~~~~l~~ll~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~--~~~~~s~~v~~g 106 (191)
T PRK00228 33 ICEHNE----NGAMGLVINRPSELDVAEVLPQLDILATPPEIRLDQPVFLGGPVQTDRGFVLHSPR--DGFDSSIRVSDG 106 (191)
T ss_pred EEEeCC----CCceEEEEcCCCCCCHHHHHHHhcccccCcccccCCeEEeCCCccCCcEEEEEECC--CcCCCceeecCC
Confidence 444444 7899999987544 33343433221 246888898864 35444311 123355667788
Q ss_pred cchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710 178 SGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (293)
Q Consensus 178 tGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (293)
+.++--..+++.+.......+++++.+.-.=..-...+|++
T Consensus 107 l~l~~s~d~l~~l~~~~~~~~~~~flGyaGW~~gQLe~Ei~ 147 (191)
T PRK00228 107 LVLTTSRDVLEALATGPGPEGVLVALGYAGWGAGQLEQEIE 147 (191)
T ss_pred eEEeCCHHHHHHHhcCCCCCcEEEEEEECCCCHHHHHHHHH
Confidence 88887778888776444346677776655444444555554
No 169
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=21.71 E-value=2.8e+02 Score=26.08 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=30.8
Q ss_pred eeeEeEeeeCC----CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 58 PTPLAEISPAA----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 58 ~~~v~~~~~~~----~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
.++|++.+.++ .+++++.|++++. ...|+||.++.|.-...
T Consensus 7 ~~~v~~~~~lt~~~~~~~~~~~ld~~~~----~~~Y~~GD~l~I~p~N~ 51 (416)
T cd06204 7 LAPVAVSRELFTGSDRSCLHIEFDISGS----GIRYQTGDHLAVWPTNP 51 (416)
T ss_pred EeEEEEEeeccCCCCccEEEEEEeCCCC----CCcccCCCEEEEEcCCC
Confidence 56777777666 3899999998652 24789999999987643
No 170
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=21.49 E-value=5.9e+02 Score=22.76 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=44.4
Q ss_pred HHHHhhccCCCCcEEEEEccCCccccccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEE
Q 022710 186 LIESGFSSKERSDVRLYYGARNLKRMAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264 (293)
Q Consensus 186 ll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~ 264 (293)
+++.+......+++-++|..-.-.. -..+.++ .++..|++++....-+... ......+.+ +...+-..++
T Consensus 123 ~~~~~~~~~g~k~vaii~~d~~~g~-~~~~~~~~~~~~~G~~vv~~~~~~~~~-----~D~~~~v~~---l~~~~pd~v~ 193 (348)
T cd06355 123 AVDWLMSNKGGKRFYLVGSDYVYPR-TANKILKAQLESLGGEVVGEEYLPLGH-----TDFQSIINK---IKAAKPDVVV 193 (348)
T ss_pred HHHHHHhccCCCeEEEECCcchHHH-HHHHHHHHHHHHcCCeEEeeEEecCCh-----hhHHHHHHH---HHHhCCCEEE
Confidence 4444433333467777765432221 1222332 2444577766543332211 112222222 1111223566
Q ss_pred EeCChHHHHHHHHHHHHcCCCcc
Q 022710 265 LCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 265 vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
+++.....-.+.+.+++.|+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~G~~~~ 216 (348)
T cd06355 194 STVNGDSNVAFFKQLKAAGITAS 216 (348)
T ss_pred EeccCCchHHHHHHHHHcCCCcc
Confidence 77777666777788888888654
No 171
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=21.22 E-value=2.1e+02 Score=23.14 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=38.3
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEE
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEI 149 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v 149 (293)
.+.-|..|.+... .+....|.|..+...+...+.|.+ ..+..+.|-..++||+|.+
T Consensus 94 ~V~~Gs~V~l~~~-~~~~~~~~IVg~~Ead~~~g~IS~-----~SPlG~ALlGk~vGD~V~v 149 (160)
T PRK06342 94 VVAFGSTVTFSRD-DGRVQTYRIVGEDEADPKAGSISY-----VSPVARALMGKAVGDVVSV 149 (160)
T ss_pred EEEeCcEEEEEEC-CCCEEEEEEEChHHhCcCCCcccc-----cCHHHHHHcCCCCCCEEEE
Confidence 3567889999864 346667888766543222444433 2577888888999999998
No 172
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=21.17 E-value=2.7e+02 Score=27.73 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=34.0
Q ss_pred CceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 55 VWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
....++|+.++.++. +++++.|++.+. ...|+||.++-|...+.
T Consensus 236 ~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~----~l~Y~~GD~lgV~P~N~ 284 (600)
T PRK10953 236 APLTASLSVNQKITGRNSEKDVRHIEIDLGDS----GLRYQPGDALGVWYQND 284 (600)
T ss_pred CCeEEEEEEEeecCCCCCCceEEEEEEecCCC----CCcccCCCEEEEEcCCC
Confidence 345788999888874 699999998653 25799999999987643
No 173
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=21.08 E-value=1.4e+02 Score=28.96 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=38.1
Q ss_pred hccCCCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcC
Q 022710 49 VRQDTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVD 101 (293)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~ 101 (293)
+.+.+....+++++.++.++. +++.+.|+.++. ...|+||.-+.|.-..
T Consensus 189 ~v~~~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s----~~~~epGDvl~l~P~N 242 (574)
T KOG1159|consen 189 IVLEPQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDS----YEEFEPGDVLSLLPSN 242 (574)
T ss_pred hhhccccccccchhcceeecCcchhheeeEEEEecCCc----cccccCCCEEEEecCC
Confidence 445566667789998888886 899999998762 2578999999998543
No 174
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=20.64 E-value=3.5e+02 Score=26.50 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=34.7
Q ss_pred CCCeEEEEE-eCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHh-CCcEEEEEEecCC
Q 022710 167 EYPTVLIFA-TGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWES-SGVKIVPVLSQPD 235 (293)
Q Consensus 167 ~~~~ivlia-~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~-~~i~~~~~~s~~~ 235 (293)
..+.+|+|+ ||+.+.|-. +++.+.... ....+ |...|.+-..+.+-+..+.. ..=++.+++|.+-
T Consensus 113 ~~~~vV~IGIGGS~LGp~~-v~~AL~~~~--~~~~~-~f~dN~Dp~~~~~~l~~l~~~~~~TLviViSKSG 179 (528)
T PRK14096 113 KFTDVLWIGIGGSALGPQF-VAEALQPNS--DGLNI-HFIDNTDPDGIDRVLAELGDRLATTLVVVISKSG 179 (528)
T ss_pred CCCeEEEECCCcchHHHHH-HHHHHhhcC--CCCcE-EEEcCCCHHHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence 455799999 999888863 344443211 12223 22344444445555555541 2335666666653
No 175
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=20.60 E-value=1.9e+02 Score=23.57 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=25.4
Q ss_pred eEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 022710 170 TVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208 (293)
Q Consensus 170 ~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~ 208 (293)
+|++++.|.| +-+..+++++.+.+....+.++++.++.
T Consensus 2 rI~~~~Sg~~-~~~~~~l~~l~~~~~~~~iv~Vit~~~~ 39 (181)
T PF00551_consen 2 RIVFFGSGSG-SFLKALLEALKARGHNVEIVLVITNPDK 39 (181)
T ss_dssp EEEEEESSSS-HHHHHHHHHHHTTSSEEEEEEEEESSTT
T ss_pred EEEEEEcCCC-HHHHHHHHHHHhCCCCceEEEEeccccc
Confidence 5889988888 6677778877654443346666655544
No 176
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=20.49 E-value=4.4e+02 Score=22.14 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=50.2
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
-++|.++++..+ ..+++++.+. .+ ......|.+|-+. | -..|+.... ++.|.+.+-.. -.-..-
T Consensus 9 ~G~V~~i~~~~~-~~~l~i~~~~--~~-~~~l~~G~SIAvn----G--vCLTV~~i~-----~~~f~vdvipE-Tl~~Tt 72 (200)
T TIGR00187 9 TAKLVSIKEKPL-FISLVVNLAD--HM-LDDLELGDSIAVN----G--VCLTVTEIN-----KNHFSVDLSPE-TLKRTN 72 (200)
T ss_pred EEEEEEEEECCC-cEEEEEEeCh--HH-hcccccCCEEEEC----c--EEEEEEEEc-----CCEEEEEEEHH-Hhhhcc
Confidence 356777777654 4567777642 11 2366889877765 2 235776664 56677766433 122234
Q ss_pred hhcCCCCCEEEEEeecC
Q 022710 138 LCGLKKGDVVEISQVMG 154 (293)
Q Consensus 138 L~~l~~Gd~v~v~gP~G 154 (293)
|..+++||.|.++-+.-
T Consensus 73 L~~l~~G~~VNLEral~ 89 (200)
T TIGR00187 73 LGDLKVGTWVNIERALK 89 (200)
T ss_pred hhhCcCCCEEEEcccCC
Confidence 67899999999976543
No 177
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.38 E-value=1.1e+02 Score=29.82 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=22.3
Q ss_pred CCCeEEEEEeCc-chhHHHHHHHHhhc
Q 022710 167 EYPTVLIFATGS-GISPIRSLIESGFS 192 (293)
Q Consensus 167 ~~~~ivlia~Gt-GIaP~~sll~~~~~ 192 (293)
+...|++|++|. ||+..+.|.+...+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~ 40 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFD 40 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCc
Confidence 566899999998 99999999998753
No 178
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.14 E-value=1.2e+02 Score=24.48 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=38.8
Q ss_pred CeEEEEEEEeCC-cchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHH
Q 022710 121 GAFEFLVKSVAG-STAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIR 184 (293)
Q Consensus 121 ~~~~~~Vk~~~G-~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~ 184 (293)
...++++--..| +-++-+..++.|..+.=..|.| |....+...|-...+..++||+.|.|..
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtig--fnve~v~yKNLk~~vwdLggqtSirPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIG--FNVETVPYKNLKFQVWDLGGQTSIRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCC--cCccccccccccceeeEccCcccccHHH
Confidence 345555554445 3344455788888887776666 6555544334455677888888888763
No 179
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.01 E-value=2.1e+02 Score=20.38 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=13.7
Q ss_pred cCCCCCeEEEEEEcCCCceeeEEe
Q 022710 87 SHTRAGQYLQLRVVDVGKPTFLAI 110 (293)
Q Consensus 87 ~~~~pGQ~v~l~~~~~~~~r~ySi 110 (293)
..++|||.+.+.+.+.++-..+.+
T Consensus 41 ~~L~pGq~l~f~~d~~g~L~~L~~ 64 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDEDGQLTALRY 64 (85)
T ss_dssp GG--TT-EEEEEE-TTS-EEEEEE
T ss_pred hhCCCCCEEEEEECCCCCEEEEEE
Confidence 457999999999987776544444
Done!