Query 022710
Match_columns 293
No_of_seqs 164 out of 1540
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 09:54:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eix_A NADH-cytochrome B5 redu 100.0 6.4E-41 2.2E-45 290.7 26.8 231 50-291 5-242 (243)
2 1tvc_A Methane monooxygenase c 100.0 1.3E-40 4.5E-45 290.2 21.6 231 52-292 6-242 (250)
3 1umk_A B5R, NADH-cytochrome B5 100.0 5.9E-40 2E-44 289.8 25.3 236 49-291 9-274 (275)
4 1qfj_A Protein (flavin reducta 100.0 8.3E-40 2.8E-44 281.8 23.6 220 57-292 3-227 (232)
5 4eh1_A Flavohemoprotein; struc 100.0 3.1E-39 1.1E-43 280.0 26.2 220 55-292 2-233 (243)
6 2cnd_A NADH-dependent nitrate 100.0 1.4E-39 4.8E-44 286.6 23.6 235 52-293 8-270 (270)
7 2r6h_A NADH:ubiquinone oxidore 100.0 2.8E-38 9.5E-43 281.1 27.6 226 55-292 8-287 (290)
8 1fdr_A Flavodoxin reductase; f 100.0 7.9E-38 2.7E-42 272.1 26.8 222 55-291 3-238 (248)
9 1krh_A Benzoate 1,2-dioxygenas 100.0 3E-38 1E-42 286.9 24.2 224 54-292 106-333 (338)
10 1gvh_A Flavohemoprotein; oxido 100.0 1E-37 3.5E-42 289.2 26.0 227 54-293 150-389 (396)
11 1cqx_A Flavohemoprotein; globi 100.0 1.7E-37 6E-42 288.3 26.4 226 54-293 152-395 (403)
12 3vo2_A Putative uncharacterize 100.0 5.7E-37 1.9E-41 275.4 25.4 223 51-282 28-284 (310)
13 4g1v_A Flavohemoglobin; three 100.0 7.2E-37 2.5E-41 283.9 26.5 226 53-293 146-389 (399)
14 2qdx_A Ferredoxin reductase; o 100.0 2.4E-37 8.3E-42 270.5 21.9 222 55-292 2-251 (257)
15 2bgi_A Ferredoxin-NADP(H) redu 100.0 7.9E-37 2.7E-41 269.6 25.1 221 55-291 15-257 (272)
16 3jqq_A Ferredoxin NADP reducta 100.0 3E-37 1E-41 277.9 21.6 226 52-292 11-314 (316)
17 4fk8_A Ferredoxin--NADP reduct 100.0 1.3E-37 4.6E-42 274.2 17.3 222 54-291 17-259 (271)
18 3lo8_A Ferredoxin--NADP reduct 100.0 2.1E-36 7E-41 271.8 23.8 224 51-282 23-285 (311)
19 1fnb_A Ferredoxin-NADP+ reduct 100.0 1E-35 3.4E-40 267.7 24.5 222 52-282 33-288 (314)
20 2b5o_A FNR, ferredoxin--NADP r 100.0 5.4E-36 1.8E-40 278.0 23.1 228 52-287 118-381 (402)
21 2bmw_A Ferredoxin--NADP reduct 100.0 1.6E-35 5.6E-40 265.1 23.4 227 54-288 19-288 (304)
22 2pia_A Phthalate dioxygenase r 100.0 2.3E-35 7.7E-40 266.2 23.9 216 52-292 4-223 (321)
23 1ep3_B Dihydroorotate dehydrog 100.0 1.2E-35 4.2E-40 260.6 21.1 211 58-291 7-220 (262)
24 2rc5_A Ferredoxin-NADP reducta 100.0 5.6E-35 1.9E-39 262.8 23.2 228 55-292 20-297 (314)
25 2gpj_A Siderophore-interacting 100.0 4.1E-32 1.4E-36 236.9 20.3 213 54-292 6-224 (252)
26 1ddg_A Sulfite reductase (NADP 99.9 6.1E-28 2.1E-32 221.5 12.3 182 88-282 145-344 (374)
27 1f20_A Nitric-oxide synthase; 99.9 5.9E-25 2E-29 205.5 16.3 173 103-285 208-406 (435)
28 4dql_A Bifunctional P-450/NADP 99.9 3E-25 1E-29 204.7 12.9 183 88-282 156-361 (393)
29 1tll_A Nitric-oxide synthase, 99.9 3.2E-25 1.1E-29 217.7 13.6 182 91-282 418-624 (688)
30 2qtl_A MSR;, methionine syntha 99.9 8.7E-25 3E-29 208.7 15.1 172 104-281 290-507 (539)
31 3lrx_A Putative hydrogenase; a 99.9 1.3E-25 4.5E-30 182.1 4.8 133 141-285 1-138 (158)
32 2bpo_A CPR, P450R, NADPH-cytoc 99.9 1.1E-24 3.6E-29 213.9 4.8 187 89-282 414-652 (682)
33 3qfs_A CPR, P450R, NADPH--cyto 99.9 1E-22 3.6E-27 190.6 16.5 168 103-282 232-427 (458)
34 3lyu_A Putative hydrogenase; t 99.9 5.8E-24 2E-28 169.3 6.2 128 147-286 3-134 (142)
35 3qe2_A CPR, P450R, NADPH--cyto 99.9 5E-22 1.7E-26 193.0 15.7 167 104-282 393-587 (618)
36 3a1f_A Cytochrome B-245 heavy 99.9 6.3E-22 2.2E-26 163.8 8.8 140 147-291 1-179 (186)
37 2f23_A Anti-cleavage anti-GREA 77.4 4.7 0.00016 31.3 5.8 65 88-155 82-146 (156)
38 2pn0_A Prokaryotic transcripti 66.6 7 0.00024 29.8 4.4 63 88-155 56-118 (141)
39 3bmb_A Regulator of nucleoside 65.4 16 0.00054 27.5 6.2 62 88-154 53-114 (136)
40 2p4v_A Transcription elongatio 64.3 5.7 0.00019 31.0 3.6 62 88-155 84-145 (158)
41 3s2u_A UDP-N-acetylglucosamine 59.9 9.3 0.00032 33.7 4.6 32 169-202 3-36 (365)
42 1grj_A GREA protein; transcrip 57.5 7.1 0.00024 30.4 3.0 63 88-155 85-147 (158)
43 3ddy_A Lumazine protein, LUMP; 48.9 81 0.0028 25.1 8.0 79 57-151 104-182 (186)
44 3ne5_B Cation efflux system pr 46.7 36 0.0012 30.6 6.3 40 57-100 276-318 (413)
45 3p9x_A Phosphoribosylglycinami 44.1 75 0.0026 25.8 7.3 38 169-207 3-40 (211)
46 2l82_A Designed protein OR32; 44.0 88 0.003 22.5 8.5 90 184-285 16-105 (162)
47 3o21_A Glutamate receptor 3; p 41.5 1.8E+02 0.006 25.3 10.4 84 196-287 130-213 (389)
48 1ddg_A Sulfite reductase (NADP 40.9 44 0.0015 29.6 5.9 43 56-102 11-58 (374)
49 1f20_A Nitric-oxide synthase; 40.1 52 0.0018 29.8 6.4 48 52-102 26-78 (435)
50 2qtl_A MSR;, methionine syntha 39.3 64 0.0022 30.2 7.0 47 52-102 110-161 (539)
51 3lkb_A Probable branched-chain 39.2 1.5E+02 0.0052 25.4 9.3 95 183-286 130-225 (392)
52 3lnn_A Membrane fusion protein 37.8 1E+02 0.0034 26.6 7.8 42 57-102 239-283 (359)
53 3ipc_A ABC transporter, substr 37.5 88 0.003 26.5 7.3 27 260-286 194-220 (356)
54 3kan_A D-dopachrome tautomeras 36.9 17 0.00059 26.4 2.1 25 269-293 74-99 (117)
55 3qfs_A CPR, P450R, NADPH--cyto 35.8 74 0.0025 29.1 6.7 47 52-102 58-108 (458)
56 3djh_A Macrophage migration in 35.6 19 0.00064 26.0 2.1 25 269-293 73-98 (114)
57 1meo_A Phosophoribosylglycinam 33.4 1.3E+02 0.0044 24.2 7.1 55 170-230 2-56 (209)
58 3keo_A Redox-sensing transcrip 32.5 1.1E+02 0.0037 24.8 6.5 102 179-285 67-174 (212)
59 4he6_A Peptidase family U32; u 31.9 30 0.001 23.7 2.6 18 141-158 30-47 (89)
60 4dql_A Bifunctional P-450/NADP 31.7 81 0.0028 28.1 6.1 42 56-102 6-52 (393)
61 1jkx_A GART;, phosphoribosylgl 31.4 1.4E+02 0.0049 24.0 7.1 55 170-230 2-56 (212)
62 3fwu_A Macrophage migration in 31.1 24 0.00083 26.3 2.1 25 269-293 95-120 (133)
63 4f11_A Gamma-aminobutyric acid 30.9 1.9E+02 0.0066 25.2 8.6 81 195-287 153-234 (433)
64 2ew0_A Hypothetical protein ac 30.9 28 0.00095 28.0 2.6 103 110-218 29-140 (192)
65 3fwt_A Macrophage migration in 29.6 27 0.00091 26.1 2.1 25 269-293 95-120 (133)
66 3a35_A Lumazine protein, LUMP; 29.2 1.7E+02 0.006 23.2 7.0 78 57-150 104-181 (190)
67 3t5s_A Gilaa.00834.A, macropha 29.2 27 0.00093 26.1 2.1 25 269-293 95-120 (135)
68 4dh4_A MIF; trimer, isomerase; 28.8 29 0.00098 24.9 2.1 25 269-293 74-99 (114)
69 3td9_A Branched chain amino ac 28.4 2.7E+02 0.0091 23.5 9.5 95 183-286 136-231 (366)
70 4evq_A Putative ABC transporte 28.3 2.3E+02 0.0079 23.9 8.5 95 181-285 137-232 (375)
71 2nlv_A XISI protein-like; XISI 28.0 32 0.0011 25.0 2.2 20 274-293 79-98 (112)
72 3lop_A Substrate binding perip 27.9 1.5E+02 0.0053 25.1 7.2 28 260-287 197-224 (364)
73 3auf_A Glycinamide ribonucleot 27.2 1.7E+02 0.0059 23.8 6.9 38 168-206 22-59 (229)
74 2q7x_A UPF0052 protein SP_1565 27.0 75 0.0026 27.7 4.8 34 168-206 4-37 (326)
75 2nwv_A XISI protein-like; YP_3 26.9 35 0.0012 24.9 2.2 20 274-293 81-100 (114)
76 3d7q_A XISI protein-like; stru 26.5 32 0.0011 25.0 2.0 20 274-293 79-98 (112)
77 3mxn_B RECQ-mediated genome in 26.3 41 0.0014 25.7 2.6 12 89-100 99-110 (150)
78 3ddy_A Lumazine protein, LUMP; 26.2 2.4E+02 0.0083 22.2 7.8 79 58-153 9-87 (186)
79 1tll_A Nitric-oxide synthase, 26.1 1.3E+02 0.0044 29.0 6.8 46 54-102 249-299 (688)
80 4eyg_A Twin-arginine transloca 25.5 2E+02 0.0069 24.2 7.5 95 183-287 127-222 (368)
81 3miz_A Putative transcriptiona 25.0 2.8E+02 0.0096 22.6 8.3 99 182-285 118-222 (301)
82 1jdp_A NPR-C, atrial natriuret 24.6 3.5E+02 0.012 23.6 10.0 82 197-287 155-239 (441)
83 2p0y_A Hypothetical protein LP 24.3 43 0.0015 29.5 2.8 24 167-190 9-32 (341)
84 3gge_A PDZ domain-containing p 23.5 1.9E+02 0.0065 20.1 5.6 54 91-151 3-58 (95)
85 3qe2_A CPR, P450R, NADPH--cyto 23.3 1.5E+02 0.0052 28.1 6.6 43 56-102 222-268 (618)
86 3i09_A Periplasmic branched-ch 23.3 3.4E+02 0.012 22.9 9.2 95 183-287 128-223 (375)
87 3fpp_A Macrolide-specific effl 22.3 99 0.0034 26.4 4.8 42 57-102 225-271 (341)
88 3hut_A Putative branched-chain 22.3 3.4E+02 0.012 22.6 10.1 96 181-286 125-221 (358)
89 3iwh_A Rhodanese-like domain p 21.9 1.1E+02 0.0038 21.3 4.2 29 257-285 54-82 (103)
90 3abf_A 4-oxalocrotonate tautom 21.6 61 0.0021 20.0 2.5 25 269-293 18-43 (64)
91 1otf_A 4-oxalocrotonate tautom 20.4 54 0.0018 20.1 2.0 25 269-293 17-42 (62)
No 1
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=100.00 E-value=6.4e-41 Score=290.73 Aligned_cols=231 Identities=17% Similarity=0.302 Sum_probs=196.5
Q ss_pred ccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEE
Q 022710 50 RQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLV 127 (293)
Q Consensus 50 ~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~V 127 (293)
.+++..|..++|++++.+++++.+++|..+++. ....|+|||||+|+++..+ ..|+|||++.+.. ++.++|+|
T Consensus 5 ~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~---~~~~~l~v 79 (243)
T 2eix_A 5 ALNPNEYKKFMLREKQIINHNTRLFRFNLHHPE--DVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDE---KGYFDLII 79 (243)
T ss_dssp SCCSSSCEEEEEEEEEEEETTEEEEEEECSSTT--CCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEE
T ss_pred cCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCC--cccCcCCceEEEEEEeeCCCEEEeeeeecCCCCC---CCEEEEEE
Confidence 356678999999999999999999999986532 2357899999999998433 5799999999865 78999999
Q ss_pred EEeC-CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc-CCCCcEEEEEcc
Q 022710 128 KSVA-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGA 205 (293)
Q Consensus 128 k~~~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~-~~~~~v~l~~~~ 205 (293)
|.++ |.+|+||+++++||+|.+.||+|+ |.++. +..++++|||||+||||++++++++... ....+++|+|++
T Consensus 80 k~~~~G~~S~~l~~l~~Gd~v~v~gP~G~-f~~~~----~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~ 154 (243)
T 2eix_A 80 KVYEKGQMSQYIDHLNPGDFLQVRGPKGQ-FDYKP----NMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFAN 154 (243)
T ss_dssp ECCTTCHHHHHHHTCCTTCEEEEEEEECS-CCCCT----TSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEE
T ss_pred EEcCCCCcchHhhcCCCCCEEEEECCeEE-EEeCC----CCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEc
Confidence 9984 789999999999999999999998 76652 3468999999999999999999999754 345799999999
Q ss_pred CCccccccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCC-CCCcEEEEeCChHHHHHHHHHHHHc
Q 022710 206 RNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN-PQGTGVVLCGQKQMAEEVTSIVLAE 282 (293)
Q Consensus 206 r~~~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~-~~~~~v~vCGp~~~~~~~~~~L~~~ 282 (293)
|+.++++|.++|++|.. .++++++++++++++|.+..|++++.+.++ .... ..+..+|+|||+.|++.+++.|++.
T Consensus 155 r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~l~~-~~~~~~~~~~vy~CGp~~m~~~v~~~l~~~ 233 (243)
T 2eix_A 155 VNEDDILLRTELDDMAKKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQ-HFSPPSSDIKVMMCGPPMMNKAMQGHLETL 233 (243)
T ss_dssp EEGGGCTTHHHHHHHHHHCTTEEEEEEEEECCTTCCSEESSCCHHHHHH-HSCCTTSSEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHhhHHHHHHHHHHHCCCeEEEEEeCCCCccccCcCCccCHHHHHH-hcCCCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 99999999999999975 378999999988778888899998654432 1222 2567899999999999999999999
Q ss_pred CCCccCeec
Q 022710 283 GVSSEKILK 291 (293)
Q Consensus 283 Gv~~~~I~~ 291 (293)
|+++++||+
T Consensus 234 G~~~~~i~~ 242 (243)
T 2eix_A 234 GYTPEQWFI 242 (243)
T ss_dssp TCCGGGEEE
T ss_pred CCCHHHEEe
Confidence 999999985
No 2
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=1.3e-40 Score=290.16 Aligned_cols=231 Identities=18% Similarity=0.372 Sum_probs=196.6
Q ss_pred CCCCceeeeEeEeeeCCCCeEEEEEEc-C-CCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710 52 DTTVWTPTPLAEISPAAESLFHVSIDI-S-DAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKS 129 (293)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~~l~l~~-~-~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~ 129 (293)
....+..++|++++.+++++++++|+. + +... ....|+||||++|++++....|+|||++.|.. ++.++|+||.
T Consensus 6 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~---~~~l~i~vk~ 81 (250)
T 1tvc_A 6 GEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGN-RGVKFEPGQFMDLTIPGTDVSRSYSPANLPNP---EGRLEFLIRV 81 (250)
T ss_dssp CCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSS-SCCSCCSCCEEEECTTSCSSSEEECCBCCSSS---SCCEEEEECC
T ss_pred CCcceEEEEEEEEEEcCCCeEEEEEEecCCCCcc-cccCcCCCcEEEEEeCCCccccccccCCCCCC---CCeEEEEEEE
Confidence 445678999999999999999999986 5 3200 12578999999999987678899999999975 7899999999
Q ss_pred eC-CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 022710 130 VA-GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207 (293)
Q Consensus 130 ~~-G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~ 207 (293)
++ |.+|+||+ ++++||+|.+.||+|+ |.+.. +..++++||||||||||++++++++...+...+++|+|++|+
T Consensus 82 ~~~G~~s~~l~~~l~~Gd~v~v~gP~G~-~~~~~----~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~v~l~~~~r~ 156 (250)
T 1tvc_A 82 LPEGRFSDYLRNDARVGQVLSVKGPLGV-FGLKE----RGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNT 156 (250)
T ss_dssp CTTSSSHHHHHHHSSSSSEEEEEEEECC-CSCCC----CSSSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECSS
T ss_pred CCCCCchHHHHhcCCCCCEEEEEcCccc-cccCc----cCCceEEEEEeccCHHHHHHHHHHHHhcCCCceEEEEEEeCC
Confidence 86 78999996 8999999999999999 54432 245889999999999999999999987666689999999999
Q ss_pred ccccccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 208 LKRMAYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 208 ~~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
.++++|.++|++|.. .++++++++++++++|.+..|++++.+.+.. .....+..+|+|||+.|++.+++.|++.|++
T Consensus 157 ~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~-~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~~ 235 (250)
T 1tvc_A 157 EPELFYIDELKSLERSMRNLTVKACVWHPSGDWEGEQGSPIDALREDL-ESSDANPDIYLCGPPGMIDAACELVRSRGIP 235 (250)
T ss_dssp STTCCCHHHHHHHHHHSSSCEEEECCSSCSSCCSSSSSSSSHHHHHHH-HHSSSSSEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred HHHhhhHHHHHHHHHhCCCeEEEEEeccCCCCcCCccceehHHHHhhh-hcccCCcEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 999999999999975 4899999999887788888999998776531 1113567899999999999999999999999
Q ss_pred ccCeecc
Q 022710 286 SEKILKN 292 (293)
Q Consensus 286 ~~~I~~~ 292 (293)
+++||++
T Consensus 236 ~~~i~~e 242 (250)
T 1tvc_A 236 GEQVFFE 242 (250)
T ss_dssp CSEEEEC
T ss_pred HHHEEEE
Confidence 9999986
No 3
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=100.00 E-value=5.9e-40 Score=289.83 Aligned_cols=236 Identities=17% Similarity=0.243 Sum_probs=196.1
Q ss_pred hccCCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEE
Q 022710 49 VRQDTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFL 126 (293)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~ 126 (293)
+.+++..|..++|++++.+++++++++|+.+++. ....|.|||||+|+++..+ ..|+|||++.+.. ++.++|+
T Consensus 9 ~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~---~~~~~l~ 83 (275)
T 1umk_A 9 TLESPDIKYPLRLIDREIISHDTRRFRFALPSPQ--HILGLPVGQHIYLSARIDGNLVVRPYTPISSDDD---KGFVDLV 83 (275)
T ss_dssp SCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTT--CBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTC---CSEEEEE
T ss_pred cccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcc--cccCCCCCcEEEEEEeeCCcEEEeccccCCccCC---CCeEEEE
Confidence 4556778999999999999999999999976532 2357899999999987444 6799999999865 7899999
Q ss_pred EEEe---------C-CcchHhhhcCCCCCEEEEEeecCCCccccCC----CCC--------CCCCeEEEEEeCcchhHHH
Q 022710 127 VKSV---------A-GSTAEVLCGLKKGDVVEISQVMGRGFAVDRI----QPP--------DEYPTVLIFATGSGISPIR 184 (293)
Q Consensus 127 Vk~~---------~-G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~----~p~--------~~~~~ivlia~GtGIaP~~ 184 (293)
||.+ + |.+|+||+++++||+|.++||+|+ |.+... .++ ...+++|||||||||||++
T Consensus 84 vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~ 162 (275)
T 1umk_A 84 IKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGL-LVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPML 162 (275)
T ss_dssp EECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECS-EEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHH
T ss_pred EEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccc-eEecCCccccccccccccccccCCceEEEEecCccHhHHH
Confidence 9987 3 789999999999999999999998 533210 001 1467999999999999999
Q ss_pred HHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhccCC-CC
Q 022710 185 SLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFN-PQ 259 (293)
Q Consensus 185 sll~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~-~~ 259 (293)
++++++... +...+++|+|++|+.++++|.++|++|... +++++++++++.+.|.+..|++++.+.++ .... ..
T Consensus 163 ~~l~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~-~l~~~~~ 241 (275)
T 1umk_A 163 QVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRD-HLPPPEE 241 (275)
T ss_dssp HHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHH-HSCCGGG
T ss_pred HHHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHH-hcCCCCC
Confidence 999999765 346899999999999999999999999764 68898888888777888899999865442 1222 25
Q ss_pred CcEEEEeCChHHHH-HHHHHHHHcCCCccCeec
Q 022710 260 GTGVVLCGQKQMAE-EVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 260 ~~~v~vCGp~~~~~-~~~~~L~~~Gv~~~~I~~ 291 (293)
+..+|+|||+.|++ .+++.|++.|+++++|++
T Consensus 242 ~~~vyvCGp~~m~~~~v~~~L~~~G~~~~~I~~ 274 (275)
T 1umk_A 242 EPLVLMCGPPPMIQYACLPNLDHVGHPTERCFV 274 (275)
T ss_dssp CCEEEEESCHHHHHHTTHHHHHHHTCCGGGEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHHHcCCCHHHEEe
Confidence 68899999999999 999999999999999985
No 4
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=100.00 E-value=8.3e-40 Score=281.84 Aligned_cols=220 Identities=20% Similarity=0.357 Sum_probs=186.9
Q ss_pred eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccch
Q 022710 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-GSTA 135 (293)
Q Consensus 57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~s 135 (293)
..++|++++.+++++++++|+.++ ...|+||||++|++++ ...|+|||++.|.. ++.++|+||.++ |..+
T Consensus 3 ~~~~V~~~~~~~~~~~~l~l~~~~-----~~~~~pGq~v~l~~~~-~~~R~ySi~s~~~~---~~~l~l~i~~~~~G~~s 73 (232)
T 1qfj_A 3 LSCKVTSVEAITDTVYRVRIVPDA-----AFSFRAGQYLMVVMDE-RDKRPFSMASTPDE---KGFIELHIGASEINLYA 73 (232)
T ss_dssp EEEEEEEEEESSSSCEEEEEEESS-----CCCCCTTCEEEEESSS-SCEEEEECCSCTTS---TTCEEEEEC------CC
T ss_pred eEEEEEEEEecCCCEEEEEEecCC-----CCCcCCCCEEEEECCC-CceeeeecCCCCCC---CCcEEEEEEEccCCchh
Confidence 468999999999999999998643 2478999999999986 57899999999975 689999999985 5556
Q ss_pred Hh-hhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710 136 EV-LCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (293)
Q Consensus 136 ~~-L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (293)
++ ++++++||+|.+.||+|+ |.+.. +..++++||||||||||++++++++...+...+++|+|++|+.++++|.
T Consensus 74 ~~~~~~l~~Gd~v~v~gP~G~-~~~~~----~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~~~~~ 148 (232)
T 1qfj_A 74 KAVMDRILKDHQIVVDIPHGE-AWLRD----DEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDL 148 (232)
T ss_dssp HHHHHHHHHHSEEEEEEEECS-CCCCS----CSSSCEEEEEETTCHHHHHHHHHHHHHHCTTCCEEEEEEESSGGGCTTH
T ss_pred HHHHHhCCCCCEEEEeCCccc-eEeCC----CCCCcEEEEEecccHhHHHHHHHHHHhcCCCCcEEEEEeeCCHHHhhhH
Confidence 65 668999999999999998 54432 2478999999999999999999999876666899999999999999999
Q ss_pred HHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHH-HHcCCCccCeec
Q 022710 215 DKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIV-LAEGVSSEKILK 291 (293)
Q Consensus 215 ~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L-~~~Gv~~~~I~~ 291 (293)
++|++|.. .++++++++++++++|.+..|++++.+.+. ..+..+..+|+|||+.|++.+++.| ++.|+++++||+
T Consensus 149 ~el~~l~~~~~~~~~~~~~s~~~~~~~g~~g~v~~~~~~~--~~~~~~~~vyvCGp~~m~~~v~~~l~~~~g~~~~~i~~ 226 (232)
T 1qfj_A 149 CELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQD--HGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFG 226 (232)
T ss_dssp HHHHHHHHHCTTEEEEEEESSCCTTCCSEESCHHHHHHHH--CSCCTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEEC
T ss_pred HHHHHHHHHCCCeEEEEEEcCCCCCcCCceeeHHHHHHHh--cCCccccEEEEECCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 99999975 489999999998888888899999887763 3344678899999999999999999 899999999998
Q ss_pred c
Q 022710 292 N 292 (293)
Q Consensus 292 ~ 292 (293)
+
T Consensus 227 E 227 (232)
T 1qfj_A 227 D 227 (232)
T ss_dssp T
T ss_pred e
Confidence 6
No 5
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=3.1e-39 Score=280.01 Aligned_cols=220 Identities=17% Similarity=0.228 Sum_probs=188.1
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----ceeeEEecCCCCCCCCCCeEEEEEEEe
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKSV 130 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----~~r~ySi~s~p~~~~~~~~~~~~Vk~~ 130 (293)
.|++++|++++.+++++++++|+.++.. ....|+||||++|+++..+ ++|+|||++.|. ++.++|+||.+
T Consensus 2 ~~~~~~V~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~----~~~~~i~vk~~ 75 (243)
T 4eh1_A 2 DGRTFVVREKQVESAYVTSFVLVPADGG--AVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASN----GREYRISVKRE 75 (243)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEESSCS--CCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCC----SSCEEEEEECT
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCC--cCCCcCCCCEEEEEEecCCCccccceeeEeccCCC----CCeEEEEEEEe
Confidence 5899999999999999999999976532 2357899999999998653 469999999986 68899999987
Q ss_pred -----C-CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEE
Q 022710 131 -----A-GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYY 203 (293)
Q Consensus 131 -----~-G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~ 203 (293)
+ |.+|+||+ ++++||+|.+.||+|+ |.++ +..++++||||||||||++++++++...+... +.++|
T Consensus 76 ~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~-~~~~-----~~~~~~vliagGtGitp~~~~l~~l~~~~~~~-v~l~~ 148 (243)
T 4eh1_A 76 GVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGD-FFYV-----ERERPVVLISAGVGATPMQAILHTLAKQNKSG-VTYLY 148 (243)
T ss_dssp TTTSSSCCHHHHHHHHHCCTTCEEEEEEEECS-CCCC-----CCSSCEEEEEEGGGHHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred ecCCCCCCeehhHHHhcCCCCCEEEEEccCcc-cCcC-----CCCCCEEEEEccccHHHHHHHHHHHHHcCCCe-EEEEE
Confidence 4 68999997 6999999999999998 5444 36789999999999999999999998665444 99999
Q ss_pred ccCCccccccHHHHHHHHhC-CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHc
Q 022710 204 GARNLKRMAYQDKFKEWESS-GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAE 282 (293)
Q Consensus 204 ~~r~~~~~~~~~~l~~l~~~-~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~ 282 (293)
++|+.++++|.++|++|... +++++++++++.+++. ..|++++... . . ...+..+|+|||+.|++.+++.|++.
T Consensus 149 ~~r~~~~~~~~~el~~l~~~~~~~~~~~~s~~~~~~~-~~g~~~~~~~-~--~-~~~~~~vyvCGp~~m~~~v~~~l~~~ 223 (243)
T 4eh1_A 149 ACNSAKEHTFAQETAQLIAQQGWMQQVWYRDESADDV-LQGEMQLAEL-I--L-PIEDGDFYLCGPIGFMQYVVKQLLAL 223 (243)
T ss_dssp EESSGGGCTTHHHHHHHHHHHTCEEEEEESSCCCTTC-EESSCCCTTS-C--C-CTTTCEEEEEECHHHHHHHHHHHHHH
T ss_pred EeCChhhhhHHHHHHHHHHhCCeEEEEEEccCCCccc-ccCCccHHHe-e--c-cCCCcEEEEECCHHHHHHHHHHHHHc
Confidence 99999999999999998764 8899999988766544 6778876544 1 2 23678999999999999999999999
Q ss_pred CCCccCeecc
Q 022710 283 GVSSEKILKN 292 (293)
Q Consensus 283 Gv~~~~I~~~ 292 (293)
|+++++||++
T Consensus 224 g~~~~~i~~E 233 (243)
T 4eh1_A 224 GVDKARIHYE 233 (243)
T ss_dssp TCCGGGEEEE
T ss_pred CCCHHHEEEe
Confidence 9999999986
No 6
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=1.4e-39 Score=286.60 Aligned_cols=235 Identities=17% Similarity=0.282 Sum_probs=191.5
Q ss_pred CCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710 52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKS 129 (293)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~ 129 (293)
++..|..++|++++.+++++++++|+.++.. ....++||||++|+++..+ ..|+|||++.+.. .+.++|+||.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~---~~~~~l~vk~ 82 (270)
T 2cnd_A 8 NPRGRIHCRLVAKKELSRDVRLFRFSLPSPD--QVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE---IGHFDLLVKV 82 (270)
T ss_dssp ---CCEEEEEEEEEEEETTEEEEEEECSSTT--CCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTC---CSEEEEEEEC
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEECCCCc--cccCCCCCCEEEEEeeeCCcEEEEeeccCCCccC---CCEEEEEEEE
Confidence 4557899999999999999999999976532 2357899999999987433 5799999998864 6899999997
Q ss_pred e----------CCcchHhhhcCCCCCEEEEEeecCC-------CccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhc
Q 022710 130 V----------AGSTAEVLCGLKKGDVVEISQVMGR-------GFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS 192 (293)
Q Consensus 130 ~----------~G~~s~~L~~l~~Gd~v~v~gP~G~-------~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~ 192 (293)
+ .|.+|+||+++++||+|.+.||+|+ .|.++.. ++..++++||||||||||++++++++..
T Consensus 83 ~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~--~~~~~~~vliagGtGiaP~~~~l~~l~~ 160 (270)
T 2cnd_A 83 YFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGK--QRNARRLAMICGGSGITPMYQIIQAVLR 160 (270)
T ss_dssp CCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTE--EECCSEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred eccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCC--cccCCEEEEEeccccHHHHHHHHHHHHh
Confidence 5 3789999999999999999999997 2444310 0247899999999999999999999976
Q ss_pred c--CCCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEec---CCCCCCccccccchHHHhhhccCCCCCcEEE
Q 022710 193 S--KERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQ---PDGNWSGETGYVQAAFSRAKKIFNPQGTGVV 264 (293)
Q Consensus 193 ~--~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~---~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~ 264 (293)
. ....+++|+|++|+.++++|.++|++|... ++++++++++ ++++|.+..|++++.+.++.......+..+|
T Consensus 161 ~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vy 240 (270)
T 2cnd_A 161 DQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLAL 240 (270)
T ss_dssp TTTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEE
T ss_pred cCCCCCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEEE
Confidence 4 245789999999999999999999999763 6888888877 4556777889999876543211222457899
Q ss_pred EeCChHHHHH-HHHHHHHcCCCccCeeccC
Q 022710 265 LCGQKQMAEE-VTSIVLAEGVSSEKILKNF 293 (293)
Q Consensus 265 vCGp~~~~~~-~~~~L~~~Gv~~~~I~~~~ 293 (293)
+|||+.|++. +++.|++.|+++++|+++|
T Consensus 241 vCGp~~m~~~~~~~~L~~~G~~~~~i~~~~ 270 (270)
T 2cnd_A 241 ACGPPPMIQFAISPNLEKMKYDMANSFVVF 270 (270)
T ss_dssp EECCHHHHHTTTHHHHHTTTCCHHHHEEEC
T ss_pred EECCHHHHHHHHHHHHHHcCCChhhcEEeC
Confidence 9999999997 5899999999999999987
No 7
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=100.00 E-value=2.8e-38 Score=281.06 Aligned_cols=226 Identities=22% Similarity=0.395 Sum_probs=189.4
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC-------------------------------CC
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-------------------------------VG 103 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~-------------------------------~~ 103 (293)
.+..++|++++.+++++++++|+.++.. ...|+|||||+|+++. ..
T Consensus 8 ~~~~~~V~~~~~~t~~~~~l~l~~~~~~---~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 84 (290)
T 2r6h_A 8 KEWECEVLSNKNVSTFIKEFVVKLPEGE---TMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEE 84 (290)
T ss_dssp CEEEEEEEEEEESSSSEEEEEEECSTTC---CCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSC
T ss_pred eEEEEEEEEeeecCCCeEEEEEEcCCCC---ccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCC
Confidence 4567999999999999999999976432 2468999999999874 24
Q ss_pred ceeeEEecCCCCCCCCCCeEEEEEEEe----------------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCC
Q 022710 104 KPTFLAIASPPSFASASGAFEFLVKSV----------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDE 167 (293)
Q Consensus 104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~ 167 (293)
..|+|||++.|.. .+.++|+||.+ .|.+|+||+++++||+|.+.||+|+ |.+. +.
T Consensus 85 ~~R~ySi~s~~~~---~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~-f~~~-----~~ 155 (290)
T 2r6h_A 85 TVRAYSMANYPAE---GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGD-FHIQ-----DT 155 (290)
T ss_dssp EEEEEECCSCTTC---CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECC-CCCC-----SS
T ss_pred cceeeeccCCCCC---CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccC-CcCC-----CC
Confidence 5799999999975 78999999962 4789999999999999999999998 5443 26
Q ss_pred CCeEEEEEeCcchhHHHHHHHHhhcc-CCCCcEEEEEccCCccccccHHHHHHHHh--CCcEEEEEEecC--CCCCCccc
Q 022710 168 YPTVLIFATGSGISPIRSLIESGFSS-KERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQP--DGNWSGET 242 (293)
Q Consensus 168 ~~~ivlia~GtGIaP~~sll~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~l~~--~~i~~~~~~s~~--~~~~~~~~ 242 (293)
.+++|||||||||||+++++++++.. ....+++|+|++|+.++++|.++|+++.. .+++++++++++ ++.|.+..
T Consensus 156 ~~~~vliagGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~ 235 (290)
T 2r6h_A 156 DAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYV 235 (290)
T ss_dssp SCEEEEEEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTTEEEEEEESSCCGGGCCCSCB
T ss_pred CCeEEEEECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEEEccCCcccCCCCee
Confidence 78999999999999999999987754 34579999999999999999999999975 478999998875 34577788
Q ss_pred cccchHHHhhhc--cCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeecc
Q 022710 243 GYVQAAFSRAKK--IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 243 g~v~~~~~~~~~--~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
|++++.+.+... .....+..+|+|||+.|++.+++.|++.|+++++||++
T Consensus 236 g~v~~~~~~~~l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e 287 (290)
T 2r6h_A 236 GFIHQVIYDNYLKDHDAPEDIEYYMCGPGPMANAVKGMLENLGVPRNMLFFD 287 (290)
T ss_dssp SCHHHHHHHHTTTTCSCGGGEEEEEECCHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EecCHHHHHhHHhhccCcCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEec
Confidence 999887754311 12234678999999999999999999999999999986
No 8
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=100.00 E-value=7.9e-38 Score=272.07 Aligned_cols=222 Identities=22% Similarity=0.360 Sum_probs=186.2
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA- 131 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~- 131 (293)
.|..++|++++.+++++++++|. ++ ...|+||||++|+++.. ...|+|||++.|. ++.++|+||.++
T Consensus 3 ~~~~~~V~~~~~~~~~~~~l~l~-~~-----~~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~----~~~l~~~v~~~~~ 72 (248)
T 1fdr_A 3 DWVTGKVTKVQNWTDALFSLTVH-AP-----VLPFTAGQFTKLGLEIDGERVQRAYSYVNSPD----NPDLEFYLVTVPD 72 (248)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEE-CC-----CCCCCTTCEEEEEECC---CEEEEEECCSCTT----CSSEEEEEECCTT
T ss_pred ceEEEEEEEEEEcCCCEEEEEEe-CC-----CCCcCCCCcEEEEccCCCCeeeeeecccCCCC----CCcEEEEEEEeCC
Confidence 58899999999999999999996 32 14789999999999853 4679999999986 588999999875
Q ss_pred CcchHhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710 132 GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (293)
Q Consensus 132 G~~s~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~ 210 (293)
|.+|+||+++++||+|.+. ||+|. |.++.. .+.++++||||||||||++++++++...+...+++|+|++|+.++
T Consensus 73 G~~s~~l~~l~~Gd~v~v~~gP~G~-f~l~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~ 148 (248)
T 1fdr_A 73 GKLSPRLAALKPGDEVQVVSEAAGF-FVLDEV---PHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHAARYAAD 148 (248)
T ss_dssp CSSHHHHHTCCTTCEEEEESSCBCC-CSGGGS---CCCSEEEEEEEGGGGHHHHHHHHHCCSCTTCSEEEEEEEESSGGG
T ss_pred CchhhHHHhCCCcCEEEEecCCcce-eEcCCC---CCCceEEEEEecccHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHH
Confidence 7899999999999999999 99998 766531 136899999999999999999999875555689999999999999
Q ss_pred cccHHHHHHHHh---CCcEEEEEEecCCCCCCccccccchHHHhhh------ccCCCCCcEEEEeCChHHHHHHHHHH-H
Q 022710 211 MAYQDKFKEWES---SGVKIVPVLSQPDGNWSGETGYVQAAFSRAK------KIFNPQGTGVVLCGQKQMAEEVTSIV-L 280 (293)
Q Consensus 211 ~~~~~~l~~l~~---~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~------~~~~~~~~~v~vCGp~~~~~~~~~~L-~ 280 (293)
++|.++|+++.. .++++++++++++. +.+..|++++.+.+.. ...+..+..+|+|||++|++.+++.| +
T Consensus 149 ~~~~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~~m~~~v~~~l~~ 227 (248)
T 1fdr_A 149 LSYLPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKE 227 (248)
T ss_dssp CTTHHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCHHHHHHHHHHHHH
Confidence 999999999976 47899988888653 3345788988765421 01234678999999999999999999 9
Q ss_pred HcCCCccCeec
Q 022710 281 AEGVSSEKILK 291 (293)
Q Consensus 281 ~~Gv~~~~I~~ 291 (293)
+.|+++++|+.
T Consensus 228 ~~G~~~~~i~~ 238 (248)
T 1fdr_A 228 TRQMTKHLRRR 238 (248)
T ss_dssp HHCCCBCBTTB
T ss_pred HcCCChHHcCC
Confidence 99999998764
No 9
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=3e-38 Score=286.93 Aligned_cols=224 Identities=22% Similarity=0.347 Sum_probs=191.9
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-C
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-G 132 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G 132 (293)
..+..++|++++.+++++++++|+.++.. ....|+||||++|++++...+|+|||++.|. ++.++|+||.++ |
T Consensus 106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~----~~~l~~~vk~~~~G 179 (338)
T 1krh_A 106 IHHFEGTLARVENLSDSTITFDIQLDDGQ--PDIHFLAGQYVNVTLPGTTETRSYSFSSQPG----NRLTGFVVRNVPQG 179 (338)
T ss_dssp CEEEEEEEEEEEESSSSEEEEEEEECTTC--CCCCCCTTCEEEEECTTSSCEEEEECCSCTT----CSEEEEEEECCTTC
T ss_pred ceEEEEEEEEEEEcCCCEEEEEEEeCCCC--CCCCcCCCCeEEEEcCCCCccccccccCCCC----CCeEEEEEEEcCCC
Confidence 35778999999999999999999976531 1257899999999999767889999999986 689999999986 6
Q ss_pred cchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcccc
Q 022710 133 STAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRM 211 (293)
Q Consensus 133 ~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~ 211 (293)
.+|+||+ ++++||+|.+.||+|+ |.+.. ..++++||||||||||++++++++...+...+++|+|++|+.+++
T Consensus 180 ~~S~~L~~~l~~Gd~v~v~gP~G~-f~~~~-----~~~~~vliagGtGiaP~~s~l~~l~~~~~~~~v~l~~~~r~~~d~ 253 (338)
T 1krh_A 180 KMSEYLSVQAKAGDKMSFTGPFGS-FYLRD-----VKRPVLMLAGGTGIAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDL 253 (338)
T ss_dssp HHHHHHHTTCCTTCEEEEEEEECS-CSCCC-----CSSCEEEEEEGGGHHHHHHHHHHHHHHCCSSCEEEEEEESSGGGC
T ss_pred CchhhHhhccCCCCEEEEECCccc-eEeCC-----CCceEEEEEccccHhHHHHHHHHHHHcCCCCeEEEEEEeCCHHHh
Confidence 8999996 7999999999999998 54442 348999999999999999999999876666899999999999999
Q ss_pred ccHHHHHHHHh--CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCe
Q 022710 212 AYQDKFKEWES--SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKI 289 (293)
Q Consensus 212 ~~~~~l~~l~~--~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I 289 (293)
+|.++|++|.. .+++++++++++++.|. ..|++++.+.+. ...+ .+..+|+|||+.|++.+++.|++.|+++++|
T Consensus 254 ~~~~el~~l~~~~~~~~~~~~~s~~~~~~~-~~g~v~~~l~~~-~~~~-~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i 330 (338)
T 1krh_A 254 VALEQLDALQQKLPWFEYRTVVAHAESQHE-RKGYVTGHIEYD-WLNG-GEVDVYLCGPVPMVEAVRSWLDTQGIQPANF 330 (338)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEETTCCSSSS-EESCSGGGCCGG-GGGG-GCSEEEEEEEHHHHHHHHHHHHHHTCCCSEE
T ss_pred hhHHHHHHHHHhCCCeEEEEEEecCCCCCC-ccCccCHHHHHh-hccc-CCcEEEEECCHHHHHHHHHHHHHcCCCHHHE
Confidence 99999999975 37999999998776654 678888876532 1222 5678999999999999999999999999999
Q ss_pred ecc
Q 022710 290 LKN 292 (293)
Q Consensus 290 ~~~ 292 (293)
|++
T Consensus 331 ~~e 333 (338)
T 1krh_A 331 LFE 333 (338)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 10
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=100.00 E-value=1e-37 Score=289.24 Aligned_cols=227 Identities=19% Similarity=0.269 Sum_probs=189.7
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC----ceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG----KPTFLAIASPPSFASASGAFEFLVKS 129 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~----~~r~ySi~s~p~~~~~~~~~~~~Vk~ 129 (293)
..|.+++|++++.+++++++++|+.++.. ....|+|||||.|+++..+ .+|+|||++.|. ++.++|+||.
T Consensus 150 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~----~~~~~i~Vk~ 223 (396)
T 1gvh_A 150 EGTRDFRIVAKTPRSALITSFELEPVDGG--AVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD----GKGYRIAVKR 223 (396)
T ss_dssp SSEEEEEEEEEEECSSSEEEEEEEETTCC--CCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC----SSCEEEEEEC
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCC--cCCCCCCCCeEEEEecCCCCccceeecceeccCCC----CCeEEEEEEE
Confidence 46789999999999999999999976432 1247899999999998433 479999999986 6789999998
Q ss_pred eC-CcchHhhhc-CCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 022710 130 VA-GSTAEVLCG-LKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207 (293)
Q Consensus 130 ~~-G~~s~~L~~-l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~ 207 (293)
.+ |.+|+||++ +++||+|.++||+|. |.++. +..+++|||||||||||++++++++...+...+++++|++|+
T Consensus 224 ~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGitP~~s~l~~l~~~~~~~~v~l~~~~r~ 298 (396)
T 1gvh_A 224 EEGGQVSNWLHNHANVGDVVKLVAPAGD-FFMAV----ADDTPVTLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAEN 298 (396)
T ss_dssp CTTCHHHHHHHHTCCTTCEEEEEEEECS-CCCCC----CTTCCEEEEEEGGGGHHHHHHHHHHHHHTCCSCEEEEEEESC
T ss_pred cCCCcchHHHHhcCCCCCEEEEEcCCcc-eECCC----CCCCCEEEEecchhHhHHHHHHHHHHhcCCCCcEEEEEEeCC
Confidence 74 789999996 999999999999996 76642 357899999999999999999999987666689999999999
Q ss_pred ccccccHHHHHHHHhC--CcEEEEEEecCCCCC-----CccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHH
Q 022710 208 LKRMAYQDKFKEWESS--GVKIVPVLSQPDGNW-----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVL 280 (293)
Q Consensus 208 ~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~ 280 (293)
.++++|.++|++|..+ ++++++++++++..| .+..|+++...... .....+..+|+|||++|++.+++.|+
T Consensus 299 ~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~--~~~~~~~~vyvCGp~~m~~~v~~~L~ 376 (396)
T 1gvh_A 299 GDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEG--AFSDPTMQFYLCGPVGFMQFTAKQLV 376 (396)
T ss_dssp TTTCCSHHHHHHHHHTSSSEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSS--CCCCTTCEEEEESCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHCCCeEEEEEECCCCccccccCccCccCcCCHHHHhh--ccCCCCCEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999864 688988888865432 24567887653331 10123788999999999999999999
Q ss_pred HcCCCccCeeccC
Q 022710 281 AEGVSSEKILKNF 293 (293)
Q Consensus 281 ~~Gv~~~~I~~~~ 293 (293)
+.|+++++||++.
T Consensus 377 ~~Gv~~~~i~~E~ 389 (396)
T 1gvh_A 377 DLGVKQENIHYEC 389 (396)
T ss_dssp HTTCCGGGEEEEC
T ss_pred HcCCCHHHEEEec
Confidence 9999999999873
No 11
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=100.00 E-value=1.7e-37 Score=288.31 Aligned_cols=226 Identities=17% Similarity=0.301 Sum_probs=188.7
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC-C---CceeeEEecCCCCCCCCCCeEEEEEEE
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD-V---GKPTFLAIASPPSFASASGAFEFLVKS 129 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~-~---~~~r~ySi~s~p~~~~~~~~~~~~Vk~ 129 (293)
..|.+++|++++.+++++++++|+.++.. ....|+|||||.|+++. . ..+|+|||++.|. ++.++|.||.
T Consensus 152 ~~~~~~~V~~~~~~s~~i~~~~l~~~~~~--~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~----~~~~~i~Vk~ 225 (403)
T 1cqx_A 152 KGWRTFVIREKRPESDVITSFILEPADGG--PVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN----GRTYRISVKR 225 (403)
T ss_dssp SSCEEEEEEEEEECSSSEEEEEEEETTCC--CCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC----SSCEEEEEEC
T ss_pred CcceeEEEEEEEEcCCCeEEEEEEeCCCC--cCCCCCCCCEEEEEEecCCCCcceeecceecCCCC----CCeEEEEEEE
Confidence 46889999999999999999999976432 12478999999999983 2 2479999999986 6889999999
Q ss_pred eC------CcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEE
Q 022710 130 VA------GSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLY 202 (293)
Q Consensus 130 ~~------G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~ 202 (293)
.+ |.+|+||+ ++++||+|.++||+|. |.++. +..+++|||||||||||++++++++.. +...+++++
T Consensus 226 ~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~----~~~~~~vlIagGtGitP~~s~l~~l~~-~~~~~v~l~ 299 (403)
T 1cqx_A 226 EGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGS-FHIDV----DAKTPIVLISGGVGLTPMVSMLKVALQ-APPRQVVFV 299 (403)
T ss_dssp CCBTTBCCCHHHHHHHHHCCTTCEEEECCCBCS-CSCCT----TCCSCEEEEESSCCHHHHHHHHHHHTC-SSCCCEEEE
T ss_pred CCCCCCCCCeehHHHhhCCCCCCEEEEecCccC-cccCC----CCCCCEEEEEecccHhhHHHHHHHHHh-CCCCcEEEE
Confidence 84 88999999 5999999999999996 76642 357899999999999999999999976 456789999
Q ss_pred EccCCccccccHHHHHHHHh--CCcEEEEEEecCCCCC-----CccccccchHHHhhhccCCCCCcEEEEeCChHHHHHH
Q 022710 203 YGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGNW-----SGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEV 275 (293)
Q Consensus 203 ~~~r~~~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~-----~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~ 275 (293)
|++|+.++++|+++|++|.. .+++++++++++.+.| .+..|+++......... . .+..+|+|||++|++.+
T Consensus 300 ~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~~~-~-~~~~vyvCGp~~m~~~v 377 (403)
T 1cqx_A 300 HGARNSAVHAMRDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSIL-L-PDADYYICGPIPFMRMQ 377 (403)
T ss_dssp EEESCSSSCHHHHHHHHHHHHCTTEEEEEEESSCCTTCCBTTTBSEESSCCGGGSHHHHC-C-TTCEEEEESSHHHHHHH
T ss_pred EEeCChhhCcHHHHHHHHHHhCCCcEEEEEECCCCcccccccccCcCCCcCHHHHhhccC-C-CCCEEEEeCCHHHHHHH
Confidence 99999999999999999976 3789998988876554 24567887643332111 1 26889999999999999
Q ss_pred HHHHHHcCCCccCeeccC
Q 022710 276 TSIVLAEGVSSEKILKNF 293 (293)
Q Consensus 276 ~~~L~~~Gv~~~~I~~~~ 293 (293)
++.|++.|+++++||++.
T Consensus 378 ~~~L~~~Gv~~~~i~~E~ 395 (403)
T 1cqx_A 378 HDALKNLGIHEARIHYEV 395 (403)
T ss_dssp HHHHHHTTCCGGGEEECC
T ss_pred HHHHHHcCCCHHHeEEee
Confidence 999999999999999873
No 12
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=5.7e-37 Score=275.44 Aligned_cols=223 Identities=22% Similarity=0.341 Sum_probs=184.2
Q ss_pred cCCCCceeeeEeEeeeCCCC-----eEEEEEEcCCCccccccCCCCCeEEEEEEcCC---C---ceeeEEecCCCCCCC-
Q 022710 51 QDTTVWTPTPLAEISPAAES-----LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---G---KPTFLAIASPPSFAS- 118 (293)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~-----~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~---~~r~ySi~s~p~~~~- 118 (293)
..++....++|++++.++++ +++++|+.+. ...|.|||||.|++++. + .+|+|||++.|..+.
T Consensus 28 ~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~-----~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~ 102 (310)
T 3vo2_A 28 YKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG-----EIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFG 102 (310)
T ss_dssp BBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT-----CCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTT
T ss_pred ecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCC-----CCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCC
Confidence 34445679999999999997 9999999542 24689999999999753 2 479999999986211
Q ss_pred CCCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHH
Q 022710 119 ASGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIE 188 (293)
Q Consensus 119 ~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~ 188 (293)
+++.++|+||.+ .|.+|+||+++++||+|.+.||+|++|.+. .+..++++||||||||||++++++
T Consensus 103 ~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIagGtGIaP~~s~l~ 178 (310)
T 3vo2_A 103 DSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMP----KDPNATVIMLATGTGIAPFRSFLW 178 (310)
T ss_dssp SSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCB----SCTTCEEEEEEEGGGGHHHHHHHH
T ss_pred CCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCC----CCCCCCEEEEeCCcchhHHHHHHH
Confidence 278999999986 388999999999999999999999966443 235789999999999999999999
Q ss_pred HhhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----cC
Q 022710 189 SGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IF 256 (293)
Q Consensus 189 ~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~ 256 (293)
++..... ..++.|+|++|+.++++|.++|++|... +++++++++++++.|.+.++++++.+.+... ..
T Consensus 179 ~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l 258 (310)
T 3vo2_A 179 KMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREELWELL 258 (310)
T ss_dssp HHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHH
T ss_pred HHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhc
Confidence 9975432 3689999999999999999999999874 7899999999988888888999887765211 12
Q ss_pred CCCCcEEEEeCChHHHHHHHHHHHHc
Q 022710 257 NPQGTGVVLCGQKQMAEEVTSIVLAE 282 (293)
Q Consensus 257 ~~~~~~v~vCGp~~~~~~~~~~L~~~ 282 (293)
...+..+|+|||+.|++.++++|.+.
T Consensus 259 ~~~~~~vyvCGp~~M~~~v~~~L~~~ 284 (310)
T 3vo2_A 259 KKDNTYVYMCGLKGMEKGIDDIMLNL 284 (310)
T ss_dssp TSTTEEEEEEESTTHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999753
No 13
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=100.00 E-value=7.2e-37 Score=283.87 Aligned_cols=226 Identities=17% Similarity=0.279 Sum_probs=187.0
Q ss_pred CCCceeeeEeEeeeCCCCeEEEEEEcCCCccc--cccCCCCCeEEEEEEcCC------CceeeEEecCCCCCCCCCCeEE
Q 022710 53 TTVWTPTPLAEISPAAESLFHVSIDISDAPDI--ASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFASASGAFE 124 (293)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~~~~~~~~ 124 (293)
-..|++++|++++.+++++++++|+.++...+ ..+.|+|||||.|+++.+ ..+|+|||++.|. ++.++
T Consensus 146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~----~~~~~ 221 (399)
T 4g1v_A 146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSAST----KNGLR 221 (399)
T ss_dssp SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC----TTCEE
T ss_pred CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCC----CCeEE
Confidence 34699999999999999999999997654322 112789999999997532 3579999999997 68899
Q ss_pred EEEEEe-------CCcchHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCC
Q 022710 125 FLVKSV-------AGSTAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKER 196 (293)
Q Consensus 125 ~~Vk~~-------~G~~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~ 196 (293)
|.||.. .|.+|+||+ ++++||+|.+.||+|. |.++........+++|||||||||||++++++++...+..
T Consensus 222 i~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~-f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~~ 300 (399)
T 4g1v_A 222 FAVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGD-FAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPN 300 (399)
T ss_dssp EEEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEEECS-CCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCTT
T ss_pred EEEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEecccc-eeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCCC
Confidence 999983 478999997 7999999999999998 7665310001478999999999999999999999877667
Q ss_pred CcEEEEEccCCccccccHHHHHHHHhC--CcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHH
Q 022710 197 SDVRLYYGARNLKRMAYQDKFKEWESS--GVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEE 274 (293)
Q Consensus 197 ~~v~l~~~~r~~~~~~~~~~l~~l~~~--~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~ 274 (293)
.+++++|++|+.++++|.++|+++... +++++++++++. |+++...... ... .+..+|+|||++|++.
T Consensus 301 ~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~-------g~~~~~~l~~--~~~-~~~~vyvCGp~~m~~~ 370 (399)
T 4g1v_A 301 RPIYWIQSSYDEKTQAFKKHVDELLAECANVDKIIVHTDTE-------PLINAAFLKE--KSP-AHADVYTCGSLAFMQA 370 (399)
T ss_dssp SCEEEEEEESSSTTSTTHHHHHHHHTTCSSEEEEEEETTTS-------CCCCHHHHHH--HSC-SSCEEEEEECHHHHHH
T ss_pred CCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEeCCC-------CcccHHHHHh--hCC-CCCEEEEECCHHHHHH
Confidence 899999999999999999999999864 688888887753 6777644432 122 2789999999999999
Q ss_pred HHHHHHHcCCCccCeeccC
Q 022710 275 VTSIVLAEGVSSEKILKNF 293 (293)
Q Consensus 275 ~~~~L~~~Gv~~~~I~~~~ 293 (293)
+++.|.+.|+++++||+++
T Consensus 371 v~~~L~~~Gv~~~~i~~E~ 389 (399)
T 4g1v_A 371 MIGHLKELEHRDDMIHYEP 389 (399)
T ss_dssp HHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHcCCCHHHeeeec
Confidence 9999999999999999873
No 14
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=100.00 E-value=2.4e-37 Score=270.53 Aligned_cols=222 Identities=21% Similarity=0.316 Sum_probs=185.1
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC-
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA- 131 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~- 131 (293)
.|..++|++++.+++++++++|+.++. ..|+||||++|+++..+ ..|+|||++.|. ++.++|+||.++
T Consensus 2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~----~~~~~~~i~~~~~ 72 (257)
T 2qdx_A 2 NLYTERVLSVHHWNDTLFSFKTTRNPG-----LRFKTGQFVMIGLEVDGRPLMRAYSIASPNY----EEHLEFFSIKVPD 72 (257)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSEEEEEEECCTT
T ss_pred ceEEEEEEEEEEcCCCeEEEEEeCCCC-----CccCCCCEEEEEecCCCCceeeeeEeecCCC----CCeEEEEEEEeCC
Confidence 588999999999999999999986432 46899999999998543 679999999986 589999999875
Q ss_pred CcchHhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccc
Q 022710 132 GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKR 210 (293)
Q Consensus 132 G~~s~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~ 210 (293)
|.+|+||+++++||+|.+. ||+|. |.++.. ...++++||||||||||++++++++...+...+++|+|++|+.++
T Consensus 73 G~~s~~l~~l~~Gd~v~v~~gp~G~-f~~~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~~ 148 (257)
T 2qdx_A 73 GPLTSRLQHLKEGDELMVSRKPTGT-LVHDDL---LPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSE 148 (257)
T ss_dssp CTTHHHHTTCCTTCEEEECSCCBCS-CCGGGB---CSCSEEEEEEEGGGGHHHHHHTTCHHHHHHCSEEEEEEEESSGGG
T ss_pred CcchhHHHhCCCCCEEEEecCCCCC-ccCCcc---cCCCeEEEEEeceEHHHHHHHHHHHHhcCCCCeEEEEEEcCCHHH
Confidence 7899999999999999999 89998 666521 136899999999999999999999865444578999999999999
Q ss_pred cccHHHHH-HHHh---------CCcEEEEEEecCCCCCCccccccchHHHhhhc-----c--CCCCCcEEEEeCChHHHH
Q 022710 211 MAYQDKFK-EWES---------SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK-----I--FNPQGTGVVLCGQKQMAE 273 (293)
Q Consensus 211 ~~~~~~l~-~l~~---------~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~-----~--~~~~~~~v~vCGp~~~~~ 273 (293)
++|.++|+ +|.. .++++++++++++. +..|++++.+.+... . .+..+..+|+|||+.|++
T Consensus 149 ~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~~ 225 (257)
T 2qdx_A 149 LAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPF---RNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLE 225 (257)
T ss_dssp CTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCC---SSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECHHHHH
T ss_pred hHhHHHHHHHHHhchhhhccCCCcEEEEEEecCCCc---ccCceechhhhhhhHHHhcccccCCcCCCEEEEECCHHHHH
Confidence 99999999 8864 47888888887632 357888887654210 1 123678999999999999
Q ss_pred HHHHHHHHcCCCcc-------Ceecc
Q 022710 274 EVTSIVLAEGVSSE-------KILKN 292 (293)
Q Consensus 274 ~~~~~L~~~Gv~~~-------~I~~~ 292 (293)
.+++.|++.|++++ +|+++
T Consensus 226 ~v~~~l~~~G~~~~~~~~~~~~i~~E 251 (257)
T 2qdx_A 226 ETSAVLDSFGLKISPRMGEPGDYLIE 251 (257)
T ss_dssp HHHHHHHHTTCCBCSSTTSCBSEEEE
T ss_pred HHHHHHHHcCCChHHhcCCCCcEEEe
Confidence 99999999999999 88764
No 15
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=100.00 E-value=7.9e-37 Score=269.58 Aligned_cols=221 Identities=18% Similarity=0.334 Sum_probs=184.2
Q ss_pred CceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcC---CCceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710 55 VWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVD---VGKPTFLAIASPPSFASASGAFEFLVKSVA 131 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~---~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~ 131 (293)
.+..++|++++.+++++++++|+.++. ..|+||||++|++++ ....|+|||++.|. ++.++|+||.++
T Consensus 15 ~~~~~~V~~~~~~~~~~~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~----~~~~~l~v~~~~ 85 (272)
T 2bgi_A 15 LPDAQTVTSVRHWTDTLFSFRVTRPQT-----LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAW----DEELEFYSIKVP 85 (272)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEECCTT-----CCCCTTCEEEEEEECTTSCEEEEEEECCSCTT----CSEEEEEEECCT
T ss_pred EeEEEEEEEEEEcCCCEEEEEEeCCCC-----CccCCCCEEEEEeccCCCCeeeeeeeeccCCC----CCeEEEEEEEcc
Confidence 356899999999999999999986432 468999999999984 23679999999986 689999999875
Q ss_pred -CcchHhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 022710 132 -GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK 209 (293)
Q Consensus 132 -G~~s~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~ 209 (293)
|.+|+||+++++||+|.+. ||+|. |.++.. ...++++||||||||||++++++++...+...+++|+|++|+.+
T Consensus 86 ~G~~s~~l~~l~~Gd~v~v~~gP~G~-f~~~~~---~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r~~~ 161 (272)
T 2bgi_A 86 DGPLTSRLQHIKVGEQIILRPKPVGT-LVIDAL---LPGKRLWFLATGTGIAPFASLMREPEAYEKFDEVIMMHACRTVA 161 (272)
T ss_dssp TCTTHHHHTTCCTTCEEEEEEEEECS-CCGGGB---CCCSEEEEEEEGGGGHHHHHHTTCGGGGTSCSEEEEEEEESSSG
T ss_pred CCCchhHHHhCCCCCEEEEeeCCCCc-cccccc---ccCCeEEEEeecccHHHHHHHHHHHHhcCCCCcEEEEEEeCCHH
Confidence 7899999999999999999 99998 766531 13689999999999999999999987655568999999999999
Q ss_pred ccccHHHHH-HHHh---------CCcEEEEEEecCCCCCCccccccchHHHhhhc-----c--CCCCCcEEEEeCChHHH
Q 022710 210 RMAYQDKFK-EWES---------SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK-----I--FNPQGTGVVLCGQKQMA 272 (293)
Q Consensus 210 ~~~~~~~l~-~l~~---------~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~-----~--~~~~~~~v~vCGp~~~~ 272 (293)
+++|.++|+ +|.. .+++++++++++. .+..|++++.+.+... . .+..+..+|+|||+.|+
T Consensus 162 ~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~---~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~~m~ 238 (272)
T 2bgi_A 162 ELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREE---FHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSLAFN 238 (272)
T ss_dssp GGHHHHHHHHHHHHCTTTTTTSTTTEEEEEEESSSC---CSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECHHHH
T ss_pred HhhHHHHHHHHHHhcchhhcccCCcEEEEEEecCCc---cccCceechHHHhhhHhhhcccccCCCCCcEEEEECCHHHH
Confidence 999999999 9875 4788888888763 2457888887654210 1 12367899999999999
Q ss_pred HHHHHHHHHcCCCccCeec
Q 022710 273 EEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 273 ~~~~~~L~~~Gv~~~~I~~ 291 (293)
+.+++.|++.|+++++|++
T Consensus 239 ~~v~~~l~~~G~~~~~i~~ 257 (272)
T 2bgi_A 239 VDVMKVLESYGLREGANSE 257 (272)
T ss_dssp HHHHHHHHTTTCCBCBTTB
T ss_pred HHHHHHHHHcCCChHHcCC
Confidence 9999999999999987764
No 16
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=3e-37 Score=277.89 Aligned_cols=226 Identities=19% Similarity=0.283 Sum_probs=185.8
Q ss_pred CCCCceeeeEeEeeeCC-----CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------------------------
Q 022710 52 DTTVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------------------------ 102 (293)
Q Consensus 52 ~~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------------------------ 102 (293)
.++....++|++++.++ .++++++|+.+. .+.|.+|||+.|..|+.
T Consensus 11 ~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~-----~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (316)
T 3jqq_A 11 TVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNG-----LFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTN 85 (316)
T ss_dssp CSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTT-----CCCCCTTCEEEECTTCC------------------------
T ss_pred cCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCC-----CcceecCcEeEEECCCccccccccccccccccccccccccc
Confidence 34445689999999998 799999999743 26899999999998753
Q ss_pred ------------CceeeEEecCCCCCCCCCCeEEEEEEEe-------------CCcchHhhhcCCCCCEEEEEeecCCCc
Q 022710 103 ------------GKPTFLAIASPPSFASASGAFEFLVKSV-------------AGSTAEVLCGLKKGDVVEISQVMGRGF 157 (293)
Q Consensus 103 ------------~~~r~ySi~s~p~~~~~~~~~~~~Vk~~-------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f 157 (293)
..+|+|||+|.|. ++.++|+||.. .|.+|+||+++++||+|.++||+|. |
T Consensus 86 h~~~~~~~~~g~~~~R~ySIaS~p~----~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-f 160 (316)
T 3jqq_A 86 HNNIALSHIKKQRCARLYSISSSNN----MENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGY-F 160 (316)
T ss_dssp -----------CCCCEEEEBCSCTT----SSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECC-C
T ss_pred ccccccccCCCcccceeeecccCCC----CCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCc-e
Confidence 2589999999997 57899999974 2789999999999999999999998 7
Q ss_pred cccCCCCCC---CCCeEEEEEeCcchhHHHHHHHHhhccC----------CCCcEEEEEccCCccccccHHHHHHHHhC-
Q 022710 158 AVDRIQPPD---EYPTVLIFATGSGISPIRSLIESGFSSK----------ERSDVRLYYGARNLKRMAYQDKFKEWESS- 223 (293)
Q Consensus 158 ~l~~~~p~~---~~~~ivlia~GtGIaP~~sll~~~~~~~----------~~~~v~l~~~~r~~~~~~~~~~l~~l~~~- 223 (293)
.++. + ..+++|||||||||||++++++++.... ...++.|+|++|+.++++|.++|++|...
T Consensus 161 ~l~~----~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~ 236 (316)
T 3jqq_A 161 NLPN----DAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMY 236 (316)
T ss_dssp CCCT----THHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHC
T ss_pred EcCC----cccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhC
Confidence 6652 2 2689999999999999999999997543 24789999999999999999999999874
Q ss_pred --CcEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEEEeCChHHHHHHHHHHHHcC----CCccCeecc
Q 022710 224 --GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQKQMAEEVTSIVLAEG----VSSEKILKN 292 (293)
Q Consensus 224 --~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~~~~~~~~~~L~~~G----v~~~~I~~~ 292 (293)
+++++++++++ +.|.+.+|++++.+.+... .....+..+|+|||+.|++.++++|++.| ++.++||++
T Consensus 237 ~~~~~~~~~~s~~-~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~~~l~~~G~~~~v~~~rih~E 314 (316)
T 3jqq_A 237 PNNINIHYVFSYK-QNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHDQFDEKKKKRVHVE 314 (316)
T ss_dssp TTTEEEEEEEGGG-CC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHHHHHHC----CHHHHTTEEEE
T ss_pred CCcEEEEEEECCC-cccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHHHHHHHcCCCcccccccEEEE
Confidence 78999999987 4677888999988766311 11125789999999999999999999999 589999987
No 17
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=100.00 E-value=1.3e-37 Score=274.20 Aligned_cols=222 Identities=21% Similarity=0.312 Sum_probs=179.9
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCC--ceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVG--KPTFLAIASPPSFASASGAFEFLVKSVA 131 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~p~~~~~~~~~~~~Vk~~~ 131 (293)
..|..++|++++.+++++++++|+.++ ...|+||||++|+++..+ ..|+|||++.|. ++.++|+||.++
T Consensus 17 ~~~~~~~V~~~~~~~~~~~~~~l~~~~-----~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~----~~~~~~~v~~~~ 87 (271)
T 4fk8_A 17 SKFDTATVLSVHHWTDTLFSFTCTRDQ-----ALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNY----EEHLEFFSIKVQ 87 (271)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEECCCT-----TCCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSSEEEEEECCT
T ss_pred ccceeEEEEEEEEcCCCEEEEEEEcCC-----CCCcCCCCEEEEEccCCCceeeeeEeccCCCC----CCcEEEEEEEEC
Confidence 469999999999999999999998543 257899999999998543 479999999886 678999999875
Q ss_pred -CcchHhhhcCCCCCEEEEE-eecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCcc
Q 022710 132 -GSTAEVLCGLKKGDVVEIS-QVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLK 209 (293)
Q Consensus 132 -G~~s~~L~~l~~Gd~v~v~-gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~ 209 (293)
|.+|+||+++++||+|.+. ||+|+ |.+... +..++++||||||||||++++++++...+...+++++|++|+.+
T Consensus 88 ~G~~s~~l~~l~~Gd~v~v~~gP~G~-~~~~~~---~~~~~~vliagG~GitP~~~~l~~l~~~~~~~~v~l~~~~r~~~ 163 (271)
T 4fk8_A 88 NGPLTSRLQHLKVGDPVLIGKKPTGT-LVADNL---LPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKG 163 (271)
T ss_dssp TCTTHHHHTTCCTTCEEEEESCCBCS-CCGGGB---CCCSEEEEEECGGGGHHHHHHTTCHHHHHHCSEEEEEECCCSHH
T ss_pred CCchhhHHhcCCCCCEEEEecCCCcc-eecCCc---CCCCeEEEEECCEEHHHHHHHHHHHHhcCCCCCEEEEEecCCHH
Confidence 7899999999999999999 99998 544421 25789999999999999999999987655567999999999999
Q ss_pred ccccHHHHHHHHhC----------CcEEEEEEecCCCCCCccccccchHHHhhhc-----c--CCCCCcEEEEeCChHHH
Q 022710 210 RMAYQDKFKEWESS----------GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK-----I--FNPQGTGVVLCGQKQMA 272 (293)
Q Consensus 210 ~~~~~~~l~~l~~~----------~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~-----~--~~~~~~~v~vCGp~~~~ 272 (293)
+++|.++|+++..+ +++++++.+++.. +..|++++.+.+... . .+..+..+|+|||+.|+
T Consensus 164 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~~~~~~~~~~~~v~vCGp~~m~ 240 (271)
T 4fk8_A 164 ELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAML 240 (271)
T ss_dssp HHHHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHTTCCCCCTTTEEEEEEECHHHH
T ss_pred HHhHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhcccccCCCCCCEEEEECCHHHH
Confidence 99999999988664 4677777766543 457888876654110 0 23467899999999999
Q ss_pred HHHHHHHHHcCCCccCeec
Q 022710 273 EEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 273 ~~~~~~L~~~Gv~~~~I~~ 291 (293)
+++++.|++.|+++++|+.
T Consensus 241 ~~v~~~l~~~gv~~~~i~~ 259 (271)
T 4fk8_A 241 KDTTELLKKAGLVEGKNSA 259 (271)
T ss_dssp HHHHHHHHHTTCCBCBTTB
T ss_pred HHHHHHHHHcCCchhhcCC
Confidence 9999999999999988764
No 18
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=2.1e-36 Score=271.83 Aligned_cols=224 Identities=20% Similarity=0.286 Sum_probs=178.1
Q ss_pred cCCCCceeeeEeEeeeCC-----CCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--------CceeeEEecCCCCCC
Q 022710 51 QDTTVWTPTPLAEISPAA-----ESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--------GKPTFLAIASPPSFA 117 (293)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~-----~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--------~~~r~ySi~s~p~~~ 117 (293)
..+..+..++|++++.++ +++++|+|+.+.. ..|+|||||+|++++. ..+|+|||++.|...
T Consensus 23 ~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~-----~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~ 97 (311)
T 3lo8_A 23 YKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN-----VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGD 97 (311)
T ss_dssp BBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS-----SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT
T ss_pred cCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC-----CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCccc
Confidence 345567899999999999 8999999997532 5789999999999864 258999999998631
Q ss_pred -CCCCeEEEEEEEe--------------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhH
Q 022710 118 -SASGAFEFLVKSV--------------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISP 182 (293)
Q Consensus 118 -~~~~~~~~~Vk~~--------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP 182 (293)
.+.+.++|+||.+ .|.+|+||+++++||+|.+.||+|.+|.... .+..+++|||||||||||
T Consensus 98 ~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~---~~~~~~~vlIagGtGIaP 174 (311)
T 3lo8_A 98 NFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPE---EDPNATHIMIATGTGVAP 174 (311)
T ss_dssp TTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCC---SCTTCEEEEEEEGGGGHH
T ss_pred CCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCC---cCCCCCEEEEECCEEHHH
Confidence 1248999999974 3789999999999999999999999554321 125789999999999999
Q ss_pred HHHHHHHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc
Q 022710 183 IRSLIESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK 254 (293)
Q Consensus 183 ~~sll~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~ 254 (293)
++++++++...+. ..++.|+|++|+.++++|.++|++|... +++++++++++++.|.+.++++++.+.+...
T Consensus 175 ~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~ 254 (311)
T 3lo8_A 175 FRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSD 254 (311)
T ss_dssp HHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHH
Confidence 9999999875432 3689999999999999999999999864 7899999999988888888999887765210
Q ss_pred -c--CCCCCcEEEEeCChHHHHHHHHHHHHc
Q 022710 255 -I--FNPQGTGVVLCGQKQMAEEVTSIVLAE 282 (293)
Q Consensus 255 -~--~~~~~~~v~vCGp~~~~~~~~~~L~~~ 282 (293)
. ....+..+|+|||+.|+++++++|++.
T Consensus 255 ~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~ 285 (311)
T 3lo8_A 255 EIFKLLDGGAHIYFCGLKGMMPGIQDTLKKV 285 (311)
T ss_dssp HHHHHHHTTCEEEEEECGGGHHHHHHHHHHH
T ss_pred HHHHhhcCCcEEEEECCHHHHHHHHHHHHHH
Confidence 0 002568999999999999999988764
No 19
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=1e-35 Score=267.74 Aligned_cols=222 Identities=21% Similarity=0.329 Sum_probs=181.3
Q ss_pred CCCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCC-CC
Q 022710 52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SA 119 (293)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~-~~ 119 (293)
.+..+..++|++++.+++ ++++++|+.++. ..|+||||+.|++++. ..+|+|||++.|... .+
T Consensus 33 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~-----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~ 107 (314)
T 1fnb_A 33 KPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE-----IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGD 107 (314)
T ss_dssp BTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC-----CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSS
T ss_pred CCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC-----CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCC
Confidence 345577899999999997 899999997542 4689999999998753 257999999998521 12
Q ss_pred CCeEEEEEEEe----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHH
Q 022710 120 SGAFEFLVKSV----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIES 189 (293)
Q Consensus 120 ~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~ 189 (293)
.+.++|+||.. .|.+|+||+++++||+|.+.||+|++|.+.. +..+++|||||||||||+++++++
T Consensus 108 ~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~----~~~~~~vlIagGtGIaP~~s~l~~ 183 (314)
T 1fnb_A 108 AKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPK----DPNATIIMLGTGTGIAPFRSFLWK 183 (314)
T ss_dssp SCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBS----CTTCEEEEEEEGGGGHHHHHHHHH
T ss_pred CCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCC----CCCCCEEEEeCCccHHHHHHHHHH
Confidence 58999999973 3889999999999999999999999665431 246899999999999999999999
Q ss_pred hhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----cCC
Q 022710 190 GFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFN 257 (293)
Q Consensus 190 ~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~ 257 (293)
+...+. ..+++|+|++|+.++++|.++|++|... +++++++++++++.|.+.++++++.+.+... ...
T Consensus 184 ~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~ 263 (314)
T 1fnb_A 184 MFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLK 263 (314)
T ss_dssp HHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTT
T ss_pred HHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechHHHHHhHHHHHHHHh
Confidence 875431 4689999999999999999999999763 6899999999887788888999887664211 122
Q ss_pred CCCcEEEEeCChHHHHHHHHHHHHc
Q 022710 258 PQGTGVVLCGQKQMAEEVTSIVLAE 282 (293)
Q Consensus 258 ~~~~~v~vCGp~~~~~~~~~~L~~~ 282 (293)
..+..+|+|||+.|++.+.+.|++.
T Consensus 264 ~~~~~vyvCGp~~m~~~v~~~L~~~ 288 (314)
T 1fnb_A 264 KDNTYVYMCGLKGMEKGIDDIMVSL 288 (314)
T ss_dssp STTEEEEEEECTTHHHHHHHHHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHH
Confidence 2578899999999999999888764
No 20
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=5.4e-36 Score=277.98 Aligned_cols=228 Identities=23% Similarity=0.346 Sum_probs=186.4
Q ss_pred CCCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCC-CC
Q 022710 52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SA 119 (293)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~-~~ 119 (293)
.+..+..++|++++.+++ ++++|+|+.++. ...|+|||||.|++++. ..+|+|||++.|..+ .+
T Consensus 118 ~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~ 193 (402)
T 2b5o_A 118 RPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEG----DLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMED 193 (402)
T ss_dssp CSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTS----CCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTS
T ss_pred cCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC----CCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCC
Confidence 344567899999999999 999999997543 25789999999998752 257999999998631 12
Q ss_pred CCeEEEEEEEe-----------CCcchHhhhcCCCC-CEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHH
Q 022710 120 SGAFEFLVKSV-----------AGSTAEVLCGLKKG-DVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLI 187 (293)
Q Consensus 120 ~~~~~~~Vk~~-----------~G~~s~~L~~l~~G-d~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll 187 (293)
++.++|+||.. .|.+|+||+++++| |+|.+.||+|++|.++. +..+++|||||||||||+++++
T Consensus 194 ~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~----~~~~~vvlIAgGtGIaP~~s~l 269 (402)
T 2b5o_A 194 NKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPD----DEDATVVMLATGTGIAPFRAFL 269 (402)
T ss_dssp SCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCS----CTTCEEEEEEEGGGGHHHHHHH
T ss_pred CCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCc----cCCCCEEEEEcccCHHHHHHHH
Confidence 58999999972 48899999999999 99999999999665442 3578999999999999999999
Q ss_pred HHhhccCC-----CCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhhc----c
Q 022710 188 ESGFSSKE-----RSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----I 255 (293)
Q Consensus 188 ~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~ 255 (293)
+++..... ..++.|+|++|+.++++|.++|++|... +++++++++++++.|.+.++++++.+.+... .
T Consensus 270 ~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~ 349 (402)
T 2b5o_A 270 WRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEM 349 (402)
T ss_dssp HHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHH
T ss_pred HHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHHHH
Confidence 99875432 3789999999999999999999999863 6899999999877788888898887655211 1
Q ss_pred CCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 256 FNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 256 ~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
....+..+|+|||+.|++.+.++|.+.|+...
T Consensus 350 l~~~~~~vyvCGP~~M~~~v~~~L~~~g~~~g 381 (402)
T 2b5o_A 350 IQKPNTHVYMCGLKGMQPPIDETFTAEAEKRG 381 (402)
T ss_dssp HTSTTEEEEEEECGGGHHHHHHHHHHHHHHTT
T ss_pred hccCCcEEEEECCHHHHHHHHHHHHHHHHHcC
Confidence 12346889999999999999999988776543
No 21
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=1.6e-35 Score=265.10 Aligned_cols=227 Identities=19% Similarity=0.314 Sum_probs=180.9
Q ss_pred CCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC------CceeeEEecCCCCCC-CCCC
Q 022710 54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV------GKPTFLAIASPPSFA-SASG 121 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~r~ySi~s~p~~~-~~~~ 121 (293)
.....++|++++.+++ ++++++|+.++.. ..|+||||+.|.+++. ..+|+|||++.|... .+++
T Consensus 19 ~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~----~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~ 94 (304)
T 2bmw_A 19 NAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGN----LKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDK 94 (304)
T ss_dssp TBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC----CCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSS
T ss_pred CCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCc----cccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCC
Confidence 3456799999999999 8999999976432 4789999999998753 246999999988521 1268
Q ss_pred eEEEEEEEe-----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHh
Q 022710 122 AFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESG 190 (293)
Q Consensus 122 ~~~~~Vk~~-----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~ 190 (293)
.++|+||.. .|.+|+||+++++||+|.+.||+|++|.+. .+..+++|||||||||||++++++++
T Consensus 95 ~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIagGtGIaP~~s~l~~~ 170 (304)
T 2bmw_A 95 TISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLP----DDPEANVIMLAGGTGITPMRTYLWRM 170 (304)
T ss_dssp EEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCC----SCTTCEEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCC----CCCCCCEEEEecCccHHHHHHHHHHH
Confidence 999999972 378999999999999999999999866443 13468999999999999999999998
Q ss_pred hccC---------CCCcEEEEEccCCccccccHHHHHHHHhC---CcEEEEEEecCCCCCCccccccchHHHhhh----c
Q 022710 191 FSSK---------ERSDVRLYYGARNLKRMAYQDKFKEWESS---GVKIVPVLSQPDGNWSGETGYVQAAFSRAK----K 254 (293)
Q Consensus 191 ~~~~---------~~~~v~l~~~~r~~~~~~~~~~l~~l~~~---~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~----~ 254 (293)
+... ...+++|+|++|+.++++|.++|++|... +++++++++++++.|.+.++++++.+.+.. .
T Consensus 171 ~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~ 250 (304)
T 2bmw_A 171 FKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ 250 (304)
T ss_dssp HCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHH
T ss_pred HHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHH
Confidence 7432 23689999999999999999999999763 789999999987777777788877665421 0
Q ss_pred cCCCCCcEEEEeCChHHHHHHHHHH----HHcCCCccC
Q 022710 255 IFNPQGTGVVLCGQKQMAEEVTSIV----LAEGVSSEK 288 (293)
Q Consensus 255 ~~~~~~~~v~vCGp~~~~~~~~~~L----~~~Gv~~~~ 288 (293)
.....+..+|+|||+.|++.++++| .+.|++.++
T Consensus 251 ~~~~~~~~vyvCGp~~m~~~v~~~l~~~~~~~g~~~~~ 288 (304)
T 2bmw_A 251 LIKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSD 288 (304)
T ss_dssp HHTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHH
T ss_pred HhhcCCcEEEEECCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 1123567899999999999887776 455776543
No 22
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=2.3e-35 Score=266.25 Aligned_cols=216 Identities=19% Similarity=0.262 Sum_probs=175.8
Q ss_pred CCCCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC
Q 022710 52 DTTVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA 131 (293)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~ 131 (293)
++..|..++|++++.+++++++++|+.++.. ....|+|||||+|++++ +..|+|||++.|.. .+.++|.||.++
T Consensus 4 ~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~--~~~~~~pGQ~v~l~~~~-g~~R~ySi~s~~~~---~~~l~i~Vk~~~ 77 (321)
T 2pia_A 4 QEDGFLRLKIASKEKIARDIWSFELTDPQGA--PLPPFEAGANLTVAVPN-GSRRTYSLCNDSQE---RNRYVIAVKRDS 77 (321)
T ss_dssp TTTTCEEEEEEEEEEEETTEEEEEEECTTCC--CCCCCCTTCEEEEECTT-SCEEEEECCSCTTC---CSEEEEEEECCT
T ss_pred CCCCcEEEEEEEEEEcCCCEEEEEEEcCCCC--cCCCCCCCCEEEEECCC-CCcEEEEeCCCCCC---CCeEEEEEEEec
Confidence 4457999999999999999999999976532 12478999999999985 48899999999875 689999999886
Q ss_pred -Cc-chHhhh-cCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 022710 132 -GS-TAEVLC-GLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208 (293)
Q Consensus 132 -G~-~s~~L~-~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~ 208 (293)
|. +|+||+ ++++||+|.+.||+|. |.++. ..++++|||||+||||+++|++++...+. .+++|+|++|+.
T Consensus 78 ~G~g~S~~L~~~l~~Gd~v~v~gP~g~-f~l~~-----~~~~~vliagG~GItP~~s~l~~l~~~~~-~~v~l~~~~r~~ 150 (321)
T 2pia_A 78 NGRGGSISFIDDTSEGDAVEVSLPRNE-FPLDK-----RAKSFILVAGGIGITPMLSMARQLRAEGL-RSFRLYYLTRDP 150 (321)
T ss_dssp TSCSHHHHHHHSCCTTCEEEECCCBCC-SCCCT-----TCSEEEEEEEGGGHHHHHHHHHHHHHHCS-SEEEEEEEESCG
T ss_pred CCcchhHHHHhcCCCCCEEEEeCCccc-cccCC-----CCCCEEEEEecccHhHHHHHHHHHHHcCC-CcEEEEEEECCh
Confidence 55 899999 8999999999999997 76652 47899999999999999999999986543 789999999999
Q ss_pred cccccHHHHHHHHh-CCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 209 KRMAYQDKFKEWES-SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 209 ~~~~~~~~l~~l~~-~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
++++|.++|++|.. .+++++ .+.+.. +....+.+.+.. ...+..+|+|||+.|++.+++.|++ ++++
T Consensus 151 ~~~~~~~el~~l~~~~~~~~~--~~~~~~---~g~~~~~~ll~~-----~~~~~~vyvCGP~~m~~~v~~~l~~--~~~~ 218 (321)
T 2pia_A 151 EGTAFFDELTSDEWRSDVKIH--HDHGDP---TKAFDFWSVFEK-----SKPAQHVYCCGPQALMDTVRDMTGH--WPSG 218 (321)
T ss_dssp GGCTTHHHHHSTTTTTTEEEE--ECTTCT---TSCCCHHHHHSS-----CCTTEEEEEESCHHHHHHHHHHTTT--SCTT
T ss_pred hhhHHHHHHhcCccCCeEEEE--ECCCcc---cCccCHHHHhcc-----cCCCCEEEEECCHHHHHHHHHHHHh--CCHh
Confidence 99999999998852 255554 333221 122334433322 2356889999999999999999987 8999
Q ss_pred Ceecc
Q 022710 288 KILKN 292 (293)
Q Consensus 288 ~I~~~ 292 (293)
+||++
T Consensus 219 ~i~~E 223 (321)
T 2pia_A 219 TVHFE 223 (321)
T ss_dssp CEEEE
T ss_pred hEEEE
Confidence 99986
No 23
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=100.00 E-value=1.2e-35 Score=260.59 Aligned_cols=211 Identities=17% Similarity=0.202 Sum_probs=174.2
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC--CceeeEEecCCCCCCCCCCeEEEEEEEeC-Ccc
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV--GKPTFLAIASPPSFASASGAFEFLVKSVA-GST 134 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~--~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-G~~ 134 (293)
.++|++++.+++++++++|+.++ ....|+||||+.|++++. ...|+|||++.|.. ++.++|+||.++ |.+
T Consensus 7 ~~~V~~~~~~t~~~~~l~l~~~~----~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~---~~~l~~~vk~~~~G~~ 79 (262)
T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTL----VDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR---AKTCTILYRIGDETTG 79 (262)
T ss_dssp EEEEEEEEEEETTEEEEEEESGG----GGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT---TTEEEEEEECCCTTSH
T ss_pred ceEEEEEEEecCCEEEEEEEcCc----ccccCCCCceEEEEcCCCCceeeEEEEeeeecCC---CCEEEEEEEEecCCch
Confidence 79999999999999999998643 135789999999999863 57899999998865 789999999954 789
Q ss_pred hHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccH
Q 022710 135 AEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQ 214 (293)
Q Consensus 135 s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~ 214 (293)
|+||+++++||+|.+.||+|++|.++.. ...++++||||||||||++++++++...+ .+++|+|++|+.++++|.
T Consensus 80 S~~l~~l~~Gd~v~v~gP~G~~f~l~~~---~~~~~~lliagGtGitP~~s~l~~l~~~~--~~v~l~~~~r~~~~~~~~ 154 (262)
T 1ep3_B 80 TYKLSKLESGAKVDVMGPLGNGFPVAEV---TSTDKILIIGGGIGVPPLYELAKQLEKTG--CQMTILLGFASENVKILE 154 (262)
T ss_dssp HHHHHTCCTTCEEEEEEEESBCCCCTTC---CTTSEEEEEEEGGGSHHHHHHHHHHHHHT--CEEEEEEEESSGGGCCCH
T ss_pred HHHHhcCCCCCEEEEEcccCCCccCCCc---cCCCeEEEEECcCcHHHHHHHHHHHHHcC--CeEEEEEEcCCHHHhhhH
Confidence 9999999999999999999987866520 13789999999999999999999997543 789999999999999999
Q ss_pred HHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCccCeec
Q 022710 215 DKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSSEKILK 291 (293)
Q Consensus 215 ~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~~~I~~ 291 (293)
++|++|... +++++ + ++.|.+..|++++.+.+. . +....+|+|||+.|++.+++ |++.|++ .+|..
T Consensus 155 ~el~~l~~~--~~~~~-~--~~~~~~~~g~v~~~l~~~--~--~~~~~vyvCGp~~m~~~v~~-l~~~gv~-~~vs~ 220 (262)
T 1ep3_B 155 NEFSNLKNV--TLKIA-T--DDGSYGTKGHVGMLMNEI--D--FEVDALYTCGAPAMLKAVAK-KYDQLER-LYISM 220 (262)
T ss_dssp HHHHTSTTE--EEEEE-E--TTCSSSEESCHHHHHHHC--C--SCCSEEEEESCHHHHHHHHH-HTTTCSS-EEEEC
T ss_pred HHHhhhccC--cEEEE-E--CCCCCcceeehHHHHHhh--c--cCCCEEEEECCHHHHHHHHH-HHhCCCC-EEEEe
Confidence 999987542 44433 2 234566788999866552 2 23578999999999999999 9999998 44543
No 24
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=100.00 E-value=5.6e-35 Score=262.79 Aligned_cols=228 Identities=21% Similarity=0.288 Sum_probs=181.0
Q ss_pred CceeeeEeEeeeCCCC--------------eEEEEEEcCCCccccccCCCCCeEEEEEEcCC-------------Cceee
Q 022710 55 VWTPTPLAEISPAAES--------------LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV-------------GKPTF 107 (293)
Q Consensus 55 ~~~~~~v~~~~~~~~~--------------~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------------~~~r~ 107 (293)
....++|++++.++++ +++++|+.++. ...|+|||||.|++++. ..+|+
T Consensus 20 ~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~----~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ 95 (314)
T 2rc5_A 20 NPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS----AYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRL 95 (314)
T ss_dssp BCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT----TCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEE
T ss_pred CCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC----cCcccCCCEEEEECCCCccccCccchhhcCCCcee
Confidence 4568999999999998 99999997542 24789999999999863 24699
Q ss_pred EEecCCCCCC-CCCCeEEEEEEEe-----------CCcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEE
Q 022710 108 LAIASPPSFA-SASGAFEFLVKSV-----------AGSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFA 175 (293)
Q Consensus 108 ySi~s~p~~~-~~~~~~~~~Vk~~-----------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia 175 (293)
|||++.|... .+++.++|+||.+ .|.+|+||+++++||+|.+.||+|++|.+... +..+++||||
T Consensus 96 ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~---~~~~~~vlIa 172 (314)
T 2rc5_A 96 YSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNT---DFSGDIMFLA 172 (314)
T ss_dssp EECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCCCSS---CBCSCEEEEE
T ss_pred eeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeCCCC---CCCCCEEEEE
Confidence 9999998511 1168999999985 36799999999999999999999996644310 2478999999
Q ss_pred eCcchhHHHHHHHHhhccC---CCCcEEEEEccCCccccccHHHHHHHHh--CCcEEEEEEecCCCCC-CccccccchHH
Q 022710 176 TGSGISPIRSLIESGFSSK---ERSDVRLYYGARNLKRMAYQDKFKEWES--SGVKIVPVLSQPDGNW-SGETGYVQAAF 249 (293)
Q Consensus 176 ~GtGIaP~~sll~~~~~~~---~~~~v~l~~~~r~~~~~~~~~~l~~l~~--~~i~~~~~~s~~~~~~-~~~~g~v~~~~ 249 (293)
|||||||++++++++.... ...+++|+|++|+.++++|.++|++|.. .+++++++++++++.+ .+.++++++.+
T Consensus 173 gGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~g~~~~v~~~l 252 (314)
T 2rc5_A 173 TGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHKNFKLITAISREEKNSFDGGRMYISHRV 252 (314)
T ss_dssp EGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHSSEEEEEEETTTCBCTTTSSBCCHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCCcEEEEEEECCCCCcccCCCceehhHHH
Confidence 9999999999999997543 2368999999999999999999999975 3799999999875543 67788888776
Q ss_pred Hhhh--c--cCCCCCcEEEEe-CChHHHHHHHHHHHHcCCCccCeecc
Q 022710 250 SRAK--K--IFNPQGTGVVLC-GQKQMAEEVTSIVLAEGVSSEKILKN 292 (293)
Q Consensus 250 ~~~~--~--~~~~~~~~v~vC-Gp~~~~~~~~~~L~~~Gv~~~~I~~~ 292 (293)
.+.. . .....+. +|+| ||+.|++.+++.|.+.|+ ++|+++
T Consensus 253 ~~~~~~l~~~~~~~~~-~yvCGGp~~m~~~v~~~L~~~g~--~~i~~e 297 (314)
T 2rc5_A 253 REQAEAVKKILNGGGR-FYICGGPKGMEKGVIEEIQKISG--NTGTYE 297 (314)
T ss_dssp HHTHHHHHHHHHHTCE-EEEEESSTTTHHHHHHHHHHHHT--CCSCHH
T ss_pred HHhHHHHHHHhhcCCe-EEEeCCcHHHHHHHHHHHHHHHh--ccchHH
Confidence 5421 0 0111234 4999 999999999999999888 566543
No 25
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=100.00 E-value=4.1e-32 Score=236.88 Aligned_cols=213 Identities=7% Similarity=0.002 Sum_probs=163.1
Q ss_pred CCceeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCC---CceeeEEecCCCCCCCCCCeEEEEEEEe
Q 022710 54 TVWTPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV---GKPTFLAIASPPSFASASGAFEFLVKSV 130 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~---~~~r~ySi~s~p~~~~~~~~~~~~Vk~~ 130 (293)
..|..++|++++.+++++++|+|+.++...+ ..++|||||.|+++.. ...|.|||++.+ .+.++|.|+.+
T Consensus 6 ~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~--~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~-----~~~~~i~~~~~ 78 (252)
T 2gpj_A 6 PAPRELEVIRSTYITPHMLRITLGGAGLAGF--PADQESAYIKLLFPQAGERPLMRTYTIRQQR-----DDEIDVDFVLH 78 (252)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEESGGGTTC--CSCCTTCEEEEEECCTTSCCEEEEEECCEEE-----TTEEEEEEECC
T ss_pred CCcEEEEEEEEEEcCCCEEEEEEEcCChhhc--CCCCCCCeEEEEcccCCCCCCCCceeeeccC-----CCEEEEEEEEe
Confidence 4688999999999999999999996532211 2479999999999853 467999999976 35788888876
Q ss_pred C--CcchHhhhcCCCCCEEEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc
Q 022710 131 A--GSTAEVLCGLKKGDVVEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL 208 (293)
Q Consensus 131 ~--G~~s~~L~~l~~Gd~v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~ 208 (293)
+ |.+|+||+++++||+|.+.||.|. |.++. ..++++||||||||||+++|++++. ...++++++++++.
T Consensus 79 ~~~G~~S~~l~~l~~Gd~l~v~gP~G~-f~l~~-----~~~~~lliagGtGitPi~s~l~~l~---~~~~~~~~~~~~~~ 149 (252)
T 2gpj_A 79 DTDGPASSWAKTAQVGELIQIGGPGLK-KLINF-----EADWFLLAGDMTALPAISVNLAKLP---NNAVGYAVIEVLSE 149 (252)
T ss_dssp SSCCHHHHHHHHCCTTCEEEEEEEECC-CCCCS-----SSSEEEEEEEGGGHHHHHHHHHHSC---TTCEEEEEEEESSG
T ss_pred CCCCcHHHHHhhCCCCCEEEEecCCCC-CcCCC-----CCceEEEEcchhhHHHHHHHHHhCC---CCCcEEEEEEECCH
Confidence 4 789999999999999999999996 76652 4578999999999999999999983 23578888999998
Q ss_pred cccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHH-HcCCCcc
Q 022710 209 KRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVL-AEGVSSE 287 (293)
Q Consensus 209 ~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~-~~Gv~~~ 287 (293)
+++...+. ..+++++++.+.... +.+ ..+.+.+.+ ......+..+|+|||++|++.+++.|+ +.|++++
T Consensus 150 ~d~~~l~~-----~~~~~v~~~~~~~~~-~~g--~~~~~~l~~--~~~~~~~~~vy~CGP~~m~~av~~~l~~~~G~~~~ 219 (252)
T 2gpj_A 150 ADIQPLVH-----PEHVELHWVINPEAD-PEG--RPLVERIAQ--LPWLAGEPAVWIACEFNSMRALRRHFKQAHALPKS 219 (252)
T ss_dssp GGCCCCCC-----CTEEEEEEEECSSCC-TTC--HHHHHHHTT--SCCCSSCEEEEEEEEHHHHHHHHHHHHHHCCCCGG
T ss_pred HHhhcccC-----CCCcEEEEEeCCCCC-ccc--HHHHHHHHh--ccCCCCCcEEEEEcCHHHHHHHHHHHHHhcCCCHH
Confidence 88653321 125677766554322 101 123333332 111224678999999999999999998 7999999
Q ss_pred Ceecc
Q 022710 288 KILKN 292 (293)
Q Consensus 288 ~I~~~ 292 (293)
+||++
T Consensus 220 ~i~~e 224 (252)
T 2gpj_A 220 HFYTS 224 (252)
T ss_dssp GEEEE
T ss_pred HeEEE
Confidence 99975
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.95 E-value=6.1e-28 Score=221.53 Aligned_cols=182 Identities=20% Similarity=0.369 Sum_probs=148.1
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe---------CCcchHhhhc-CCCCCEEEEEeecCCCc
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV---------AGSTAEVLCG-LKKGDVVEISQVMGRGF 157 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~---------~G~~s~~L~~-l~~Gd~v~v~gP~G~~f 157 (293)
.+.||||+.+..+ ..+|+|||+|+|.. +++.++|+||.+ .|..|+||++ +++||+|.+.||.+..|
T Consensus 145 ~~~~Gq~v~l~~~--~~~R~YSIaSsp~~--~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F 220 (374)
T 1ddg_A 145 QLDAEALINLLRP--LTPRLYSIASSQAE--VENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNF 220 (374)
T ss_dssp CCCHHHHHHHSCB--CCCEEEEBCCCTTT--SCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEEECCTTS
T ss_pred CCCHHHHHhhccC--CCCccceecCCCCC--CCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEEeeCCCc
Confidence 6899999999876 57899999999852 158999999986 3789999997 99999999999555448
Q ss_pred cccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecC
Q 022710 158 AVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQP 234 (293)
Q Consensus 158 ~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~ 234 (293)
.++. +..++++|||+||||||++++++++...+...++.|+|++|+. ++++|++||++|...+ +++++++|++
T Consensus 221 ~lp~----~~~~piimIa~GtGIAP~~s~l~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Srd 296 (374)
T 1ddg_A 221 RLPA----NPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRD 296 (374)
T ss_dssp CCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHTCCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSCCEEEEEETTS
T ss_pred cCCC----CCCCCEEEEECCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCCcEEEEEEecC
Confidence 6652 3567999999999999999999999876666899999999998 7899999999998764 4888888886
Q ss_pred CCCCCccccccchHHHhhhc----cCCCCCcEEEEeC-ChHHHHHHHHHHHHc
Q 022710 235 DGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCG-QKQMAEEVTSIVLAE 282 (293)
Q Consensus 235 ~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCG-p~~~~~~~~~~L~~~ 282 (293)
+. .++|+++.+.+... .. ..+..+|+|| |+.|++.+.++|.+.
T Consensus 297 ~~----~k~yVq~~l~~~~~~l~~~l-~~~~~vYvCG~p~~M~~~V~~~L~~i 344 (374)
T 1ddg_A 297 QK----EKVYVQDKLREQGAELWRWI-NDGAHIYVCGDANRMAKDVEQALLEV 344 (374)
T ss_dssp SS----SCCCHHHHHHHTHHHHHHHH-HTTCEEEEEECTTTHHHHHHHHHHHH
T ss_pred CC----CCccHHHHHHHhHHHHHHHH-hCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 53 36788777654210 11 1468899999 999999999888654
No 27
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.92 E-value=5.9e-25 Score=205.48 Aligned_cols=173 Identities=21% Similarity=0.342 Sum_probs=136.0
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEe------------CCcchHhhhcCCCCCEEEEEee-cCCCccccCCCCCCCCC
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQV-MGRGFAVDRIQPPDEYP 169 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~------------~G~~s~~L~~l~~Gd~v~v~gP-~G~~f~l~~~~p~~~~~ 169 (293)
..+|+|||+|+|.. .++.++|+|+.+ .|.+|+||+++++||+|.+.|| .|. |.+.. +...
T Consensus 208 l~~R~YSIsSsp~~--~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~-F~lp~----~~~~ 280 (435)
T 1f20_A 208 LQPRYYSISSSPDM--YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPS-FHLPR----NPQV 280 (435)
T ss_dssp CCCEEEECCSCTTT--STTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCTT-SSCCS----CTTS
T ss_pred CCCccccccCCccc--CCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCCC-ccCCC----CCCC
Confidence 46799999999862 147899999853 2788999999999999999994 555 76652 3467
Q ss_pred eEEEEEeCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCcc-ccccHHHHHHHHhCC--cEEEEEEecCCCCCCcc
Q 022710 170 TVLIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLK-RMAYQDKFKEWESSG--VKIVPVLSQPDGNWSGE 241 (293)
Q Consensus 170 ~ivlia~GtGIaP~~sll~~~~~~-----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~~~ 241 (293)
+++|||+||||||++++++++... ....++.|+|++|+.+ +++|+++|++|...+ +++++++|++++. .
T Consensus 281 piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~~~l~~a~Sr~~~~---~ 357 (435)
T 1f20_A 281 PCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTAYSREPDR---P 357 (435)
T ss_dssp CEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEEEEEEEESSCTTS---C
T ss_pred CEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCCccEEEEEECCCCCC---C
Confidence 899999999999999999998652 3467899999999998 789999999998765 3788888887543 2
Q ss_pred ccccchHHHhh-hc----cCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 242 TGYVQAAFSRA-KK----IFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 242 ~g~v~~~~~~~-~~----~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
++|+++.+.+. .. .....+..+|+|||+.|++++.++|.+.+..
T Consensus 358 k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i~~~ 406 (435)
T 1f20_A 358 KKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQ 406 (435)
T ss_dssp CCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHhhhHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHHHH
Confidence 67888776543 11 0112567899999999999999998776543
No 28
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.92 E-value=3e-25 Score=204.75 Aligned_cols=183 Identities=22% Similarity=0.439 Sum_probs=141.0
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeC-----------CcchHhhhcCCCCCEEE--EEeecC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVA-----------GSTAEVLCGLKKGDVVE--ISQVMG 154 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~-----------G~~s~~L~~l~~Gd~v~--v~gP~G 154 (293)
...+||++.+. | ...+|+|||+|+|.. +++.++|+|+.+. |..|+||+++++||+|. ++||+|
T Consensus 156 ~~p~~~~l~~l-p-~l~~R~YSIsSsp~~--~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g 231 (393)
T 4dql_A 156 EMKFSEFIALL-P-SIRPRYYSISSSPRV--DEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQS 231 (393)
T ss_dssp CCCHHHHHHTS-C-BCCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSS
T ss_pred CCCHHHHHHhC-C-CCcceeeeccccccc--cCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCC
Confidence 45678877663 3 257899999999863 1478999998652 66899999999999998 689999
Q ss_pred CCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhh---ccC-CCCcEEEEEccCC-ccccccHHHHHHHHhC-CcEEE
Q 022710 155 RGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGF---SSK-ERSDVRLYYGARN-LKRMAYQDKFKEWESS-GVKIV 228 (293)
Q Consensus 155 ~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~---~~~-~~~~v~l~~~~r~-~~~~~~~~~l~~l~~~-~i~~~ 228 (293)
. |.++. +...+++|||+||||||+++++++.. ..+ ...++.|+|++|+ .++++|+++|++|... +++++
T Consensus 232 ~-F~lp~----~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~l~l~ 306 (393)
T 4dql_A 232 E-FTLPK----DPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSEGIITLH 306 (393)
T ss_dssp C-CCCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSCEEE
T ss_pred C-cccCc----cCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhCCCeEEE
Confidence 7 76652 35679999999999999999999852 222 3468999999999 5799999999999875 57999
Q ss_pred EEEecCCCCCCccccccchHHHhhhcc---CCCCCcEEEEeCCh-HHHHHHHHHHHHc
Q 022710 229 PVLSQPDGNWSGETGYVQAAFSRAKKI---FNPQGTGVVLCGQK-QMAEEVTSIVLAE 282 (293)
Q Consensus 229 ~~~s~~~~~~~~~~g~v~~~~~~~~~~---~~~~~~~v~vCGp~-~~~~~~~~~L~~~ 282 (293)
+++|++++. .++|+++.+.+.... .-..+..+|+|||. .|.+++.++|.+.
T Consensus 307 ~a~Sr~~~~---~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i 361 (393)
T 4dql_A 307 TAFSRMPNQ---PKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKS 361 (393)
T ss_dssp EEESSCTTS---CCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred EEEeCCCCC---CCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHH
Confidence 999986442 467888876542110 01246899999995 6777888887653
No 29
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.92 E-value=3.2e-25 Score=217.74 Aligned_cols=182 Identities=20% Similarity=0.321 Sum_probs=141.3
Q ss_pred CCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe------------CCcchHhhhcCCCCCEEEEEeecCCCcc
Q 022710 91 AGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGLKKGDVVEISQVMGRGFA 158 (293)
Q Consensus 91 pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~------------~G~~s~~L~~l~~Gd~v~v~gP~G~~f~ 158 (293)
|+||+...+|. ..+|+|||+|.|.. .++.++|+|+.+ .|..|+||+++++||+|.+.+|.+..|.
T Consensus 418 p~~~l~~~lp~-l~~R~YSIsSsp~~--~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g~F~ 494 (688)
T 1tll_A 418 PATLLLTQLSL-LQPRYYSISSSPDM--YPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAPSFH 494 (688)
T ss_dssp CHHHHHHHSCB-CCCEEEEBCSCTTT--STTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCGGGS
T ss_pred CHHHHHHhCcc-cceeEEeecCCccc--CCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCCCcc
Confidence 56666555553 46899999999852 147899998854 1788999999999999999994443386
Q ss_pred ccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc-----CCCCcEEEEEccCCcc-ccccHHHHHHHHhCC--cEEEEE
Q 022710 159 VDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-----KERSDVRLYYGARNLK-RMAYQDKFKEWESSG--VKIVPV 230 (293)
Q Consensus 159 l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~-----~~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~--i~~~~~ 230 (293)
+.. +...++||||+||||||++++++++... ....++.|+|++|+.+ +++|+++|++|...+ ++++++
T Consensus 495 lp~----~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~~~~l~~a 570 (688)
T 1tll_A 495 LPR----NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFRELYTA 570 (688)
T ss_dssp CCS----CTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTSEEEEEEE
T ss_pred cCc----CCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCCceEEEEE
Confidence 652 3467999999999999999999998753 3567899999999998 689999999998764 478888
Q ss_pred EecCCCCCCccccccchHHHhh-hc----cCCCCCcEEEEeCChHHHHHHHHHHHHc
Q 022710 231 LSQPDGNWSGETGYVQAAFSRA-KK----IFNPQGTGVVLCGQKQMAEEVTSIVLAE 282 (293)
Q Consensus 231 ~s~~~~~~~~~~g~v~~~~~~~-~~----~~~~~~~~v~vCGp~~~~~~~~~~L~~~ 282 (293)
+++++..+ ++|+++.+.+. .. .....+..+|+|||+.|++.+.++|.+.
T Consensus 571 ~Sr~~~~~---k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i 624 (688)
T 1tll_A 571 YSREPDRP---KKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRI 624 (688)
T ss_dssp ESSCTTSC---CCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred ECCCCCCC---ccchhhhhHHhHHHHHHHhhccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 88875432 57888766543 10 0112468899999999999999999875
No 30
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.92 E-value=8.7e-25 Score=208.73 Aligned_cols=172 Identities=18% Similarity=0.349 Sum_probs=131.6
Q ss_pred ceeeEEecCCCCCCCCCCeEEEEEEEe------------CCcchHhhhcC-----------CCCC-------EEEEEeec
Q 022710 104 KPTFLAIASPPSFASASGAFEFLVKSV------------AGSTAEVLCGL-----------KKGD-------VVEISQVM 153 (293)
Q Consensus 104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~~------------~G~~s~~L~~l-----------~~Gd-------~v~v~gP~ 153 (293)
.+|+|||+|+|.. +++.++|+||.+ .|..|+||+++ ++|| .|.+.+|.
T Consensus 290 ~~R~YSIsSsp~~--~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~ 367 (539)
T 2qtl_A 290 QPRPYSCASSSLF--HPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRT 367 (539)
T ss_dssp CCEEEECCSCTTT--STTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECS
T ss_pred cceEEeecCCccC--CCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeee
Confidence 4689999999851 168999999976 27789999986 8999 99999999
Q ss_pred CCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhc---c---CCCCcEEEEEccCCc-cccccHHHHHHHHhCC--
Q 022710 154 GRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFS---S---KERSDVRLYYGARNL-KRMAYQDKFKEWESSG-- 224 (293)
Q Consensus 154 G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~---~---~~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~-- 224 (293)
|..|.+.. +...++||||+||||||+++++++... . ....++.||||+|+. ++++|+++|++|...+
T Consensus 368 g~~F~Lp~----~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~~ 443 (539)
T 2qtl_A 368 TNSFHLPD----DPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGIL 443 (539)
T ss_dssp CCCCCCCS----STTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTSS
T ss_pred CCCccCCc----cCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCCC
Confidence 85587653 346799999999999999999999642 1 145789999999999 6999999999998764
Q ss_pred cEEEEEEecCCC--CCCccccccchHHHhhhcc----CCCCCcEEEEeCCh-HHHHHHHHHHHH
Q 022710 225 VKIVPVLSQPDG--NWSGETGYVQAAFSRAKKI----FNPQGTGVVLCGQK-QMAEEVTSIVLA 281 (293)
Q Consensus 225 i~~~~~~s~~~~--~~~~~~g~v~~~~~~~~~~----~~~~~~~v~vCGp~-~~~~~~~~~L~~ 281 (293)
+++++++|+++. .|.+.++|+++.+.+.... ....+..+|+|||+ .|++++.++|.+
T Consensus 444 ~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V~~~L~~ 507 (539)
T 2qtl_A 444 THLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQ 507 (539)
T ss_dssp CEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHH
T ss_pred cEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHHHHHHHH
Confidence 489999998754 3566789999887663211 11246789999997 999999988864
No 31
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.91 E-value=1.3e-25 Score=182.06 Aligned_cols=133 Identities=14% Similarity=0.201 Sum_probs=96.6
Q ss_pred CCCCCE-EEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHH
Q 022710 141 LKKGDV-VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKE 219 (293)
Q Consensus 141 l~~Gd~-v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~ 219 (293)
+++||+ +.++||+|++|.++ ..++++||||||||||++++++++.+.+ .+++++ ++|+.++++|.++|++
T Consensus 1 L~~Gd~vl~v~gP~G~~f~~~------~~~~~llIaGG~GItPl~sm~~~l~~~~--~~v~l~-g~r~~~d~~~~~el~~ 71 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTPVPME------KFGKILAIGAYTGIVEVYPIAKAWQEIG--NDVTTL-HVTFEPMVILKEELEK 71 (158)
T ss_dssp -----------CCCCCCBCCC------CCSEEEEEEETTHHHHHHHHHHHHHHHT--CEEEEE-EECBGGGCCSHHHHHH
T ss_pred CcCCCEeeEEECCCCCCCccC------CCCeEEEEEccCcHHHHHHHHHHHHhcC--CcEEEE-EeCCHHHhhHHHHHHH
Confidence 578999 69999999977543 4679999999999999999999987543 589999 9999999999999999
Q ss_pred HHhCCcEEEEEEecC----CCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 220 WESSGVKIVPVLSQP----DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 220 l~~~~i~~~~~~s~~----~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
|.. ++.+.++++.+ +++|.+.+|++++.+.+. ..+.....+|+|||+.|++.+.+.|++.|++
T Consensus 72 l~~-~~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~--l~~~~~~~vy~CGP~~mm~~v~~~l~~~Gv~ 138 (158)
T 3lrx_A 72 AVT-RHIVEPVPLNPNQDFLANMKNVSQRLKEKVREL--LESEDWDLVFMVGPVGDQKQVFEVVKEYGVP 138 (158)
T ss_dssp HSS-EEEECCBCCCTTSCHHHHHHHHHHHHHHHHHHH--HHHSCCSEEEEESCHHHHHHHHHHHGGGTCC
T ss_pred HHh-ceEEEEeeccccccCCCCCCCCcccccHHHHHh--hccCCCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence 864 33333333332 234556788998866542 2222456899999999999999999999998
No 32
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.90 E-value=1.1e-24 Score=213.93 Aligned_cols=187 Identities=21% Similarity=0.316 Sum_probs=143.6
Q ss_pred CCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEe-------------CCcchHhhhcCCC------------
Q 022710 89 TRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSV-------------AGSTAEVLCGLKK------------ 143 (293)
Q Consensus 89 ~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~-------------~G~~s~~L~~l~~------------ 143 (293)
..|+||+...+|. ..+|+|||+|+|.. .++.++|+|+.+ .|..|+||+++++
T Consensus 414 ~~p~~~l~~~lp~-l~~R~YSIsSsp~~--~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~ 490 (682)
T 2bpo_A 414 TVPMQFLVESVPQ-MTPRYYSISSSSLS--EKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNL 490 (682)
T ss_dssp TSCHHHHHHHSCB-CCCEEEEBCSCTTT--CTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred CCCHHHHHHhCcc-cccccccccCCccc--CCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccc
Confidence 3688888777764 57899999999863 148899987542 3789999998776
Q ss_pred CCEEEEEeecCCCc------ccc---CCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccC----------CCCcEEEEEc
Q 022710 144 GDVVEISQVMGRGF------AVD---RIQPPDEYPTVLIFATGSGISPIRSLIESGFSSK----------ERSDVRLYYG 204 (293)
Q Consensus 144 Gd~v~v~gP~G~~f------~l~---~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~----------~~~~v~l~~~ 204 (293)
|+++.+.||+|.+. .+. ...|.+...+++|||+||||||++++++++.... ...++.|||+
T Consensus 491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG 570 (682)
T 2bpo_A 491 PVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYG 570 (682)
T ss_dssp CCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEE
T ss_pred ccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEe
Confidence 99999999999830 111 0123344689999999999999999999986432 2478999999
Q ss_pred cCCccccccHHHHHHHHh---CCcEEEEEEecCCCCCCccccccchHHHhhhc----cCCCCCcEEEEeCC-hHHHHHHH
Q 022710 205 ARNLKRMAYQDKFKEWES---SGVKIVPVLSQPDGNWSGETGYVQAAFSRAKK----IFNPQGTGVVLCGQ-KQMAEEVT 276 (293)
Q Consensus 205 ~r~~~~~~~~~~l~~l~~---~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp-~~~~~~~~ 276 (293)
+|+.++++|++||++|+. .++++++++|++++ +.++|+++.+.+... .. ..+..+|+||| +.|++++.
T Consensus 571 ~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~l~~~l-~~~~~vYvCGpa~~M~~~V~ 646 (682)
T 2bpo_A 571 SRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQVFEMI-NNGAFIYVCGDAKGMAKGVS 646 (682)
T ss_dssp ESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHHHHHHH-TTTCEEEEEECSTTHHHHHH
T ss_pred cCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHHHHHHH-hCCcEEEEeCCchHhHHHHH
Confidence 999999999999999943 25789999998543 357899987765321 12 25688999999 79999999
Q ss_pred HHHHHc
Q 022710 277 SIVLAE 282 (293)
Q Consensus 277 ~~L~~~ 282 (293)
++|.+.
T Consensus 647 ~~L~~i 652 (682)
T 2bpo_A 647 TALVGI 652 (682)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888653
No 33
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.89 E-value=1e-22 Score=190.56 Aligned_cols=168 Identities=18% Similarity=0.367 Sum_probs=132.5
Q ss_pred CceeeEEecCCCCCCCCCCeEEEEEEEe----------CCcchHhhhcCCCCC------EEEEEeecCCCccccCCCCCC
Q 022710 103 GKPTFLAIASPPSFASASGAFEFLVKSV----------AGSTAEVLCGLKKGD------VVEISQVMGRGFAVDRIQPPD 166 (293)
Q Consensus 103 ~~~r~ySi~s~p~~~~~~~~~~~~Vk~~----------~G~~s~~L~~l~~Gd------~v~v~gP~G~~f~l~~~~p~~ 166 (293)
..+|+|||+|+|.. +++.++|+|+.+ .|..|+||+++.+|+ .|.+.+|.|. |.+.. +
T Consensus 232 l~pR~YSIsSsp~~--~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~-F~lp~----~ 304 (458)
T 3qfs_A 232 LQARYYSIASSSKV--HPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPF----K 304 (458)
T ss_dssp CCCEEEECCSCTTT--CTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECCS-CCCCS----S
T ss_pred CcceeEeeccCccc--CCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCCC-cccCC----C
Confidence 57899999999852 157899988642 278999999987765 6999999996 87653 3
Q ss_pred CCCeEEEEEeCcchhHHHHHHHHhh---ccC-CCCcEEEEEccCCc-cccccHHHHHHHHhCC--cEEEEEEecCCCCCC
Q 022710 167 EYPTVLIFATGSGISPIRSLIESGF---SSK-ERSDVRLYYGARNL-KRMAYQDKFKEWESSG--VKIVPVLSQPDGNWS 239 (293)
Q Consensus 167 ~~~~ivlia~GtGIaP~~sll~~~~---~~~-~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~--i~~~~~~s~~~~~~~ 239 (293)
...+++|||+||||||+++++++.. +.+ ...++.|+|++|+. ++++|+++|++|...+ .++++++|+++.
T Consensus 305 ~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l~~l~~a~SRd~~--- 381 (458)
T 3qfs_A 305 ATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS--- 381 (458)
T ss_dssp TTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS---
T ss_pred CCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCCCEEEEEEECCCC---
Confidence 4679999999999999999999853 222 45789999999996 7999999999998764 388889888653
Q ss_pred ccccccchHHHhhhc----cCCCCCcEEEEeCCh-HHHHHHHHHHHHc
Q 022710 240 GETGYVQAAFSRAKK----IFNPQGTGVVLCGQK-QMAEEVTSIVLAE 282 (293)
Q Consensus 240 ~~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~-~~~~~~~~~L~~~ 282 (293)
.++|+++.+.+... .. ..+..+|+|||+ .|++++.++|.+.
T Consensus 382 -~k~yVqd~l~~~~~~l~~~l-~~~~~vYvCGp~~~M~~~V~~~L~~i 427 (458)
T 3qfs_A 382 -HKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYDI 427 (458)
T ss_dssp -SCCCHHHHHHHTHHHHHHHH-HTTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred -CcccHhHHHHHhHHHHHHHh-cCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 47899988765321 11 257899999996 7999999888653
No 34
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.89 E-value=5.8e-24 Score=169.27 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=98.5
Q ss_pred EEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcE
Q 022710 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVK 226 (293)
Q Consensus 147 v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~ 226 (293)
+++.||+|++|..+ ..+++++||||+||||++++++++.+.+ .+++++ ++|+.++++|+++|++|.. ++.
T Consensus 3 ~~v~GP~G~~~~~~------~~~~~llIaGG~GiaPl~sm~~~l~~~~--~~v~l~-g~R~~~~~~~~~el~~l~~-~~~ 72 (142)
T 3lyu_A 3 LNVAGPLGTPVPME------KFGKILAIGAYTGIVEVYPIAKAWQEIG--NDVTTL-HVTFEPMVILKEELEKAVT-RHI 72 (142)
T ss_dssp ----CCCSCCBCCC------CCSEEEEEEETTHHHHHHHHHHHHHHTT--CEEEEE-EEEEGGGCCSHHHHHTTSS-EEE
T ss_pred eeeeCCCCCCccCC------CCCeEEEEECcCcHHHHHHHHHHHHhcC--CcEEEE-EeCCHHHhhHHHHHHHHHh-heE
Confidence 57899999977553 4689999999999999999999987543 589999 9999999999999998864 344
Q ss_pred EEEEEecC----CCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHHHHHHHHcCCCc
Q 022710 227 IVPVLSQP----DGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVSS 286 (293)
Q Consensus 227 ~~~~~s~~----~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~~ 286 (293)
+.++++.+ +++|.+.+|++.+.+.+. ..+.....+|+|||+.|++.+.+.+++.||+-
T Consensus 73 ~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~--~~~~~~~~vy~CGP~~Mm~av~~~l~~~~~~~ 134 (142)
T 3lyu_A 73 VEPVPLNPNQDFLANMKNVSQRLKEKVREL--LESEDWDLVFMVGPVGDQKQVFEVVKEYGVPM 134 (142)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHHHHH--HHSSCCSEEEEESCHHHHHHHHHHHHHHTCCB
T ss_pred EEEeecccccCCCCCCCCCccchhHHHHHh--cccCCCCEEEEECCHHHHHHHHHHHHHcCCch
Confidence 44444442 234556788888876552 22334568999999999999999999999974
No 35
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.88 E-value=5e-22 Score=193.01 Aligned_cols=167 Identities=19% Similarity=0.389 Sum_probs=130.3
Q ss_pred ceeeEEecCCCCCCCCCCeEEEEEEE----------eCCcchHhhhcCCC-CC-----EEEEEeecCCCccccCCCCCCC
Q 022710 104 KPTFLAIASPPSFASASGAFEFLVKS----------VAGSTAEVLCGLKK-GD-----VVEISQVMGRGFAVDRIQPPDE 167 (293)
Q Consensus 104 ~~r~ySi~s~p~~~~~~~~~~~~Vk~----------~~G~~s~~L~~l~~-Gd-----~v~v~gP~G~~f~l~~~~p~~~ 167 (293)
.+|+|||+|+|.. .++.++|+|+. ..|..|+||+++.+ || +|.+.+|.|. |.+.. +.
T Consensus 393 ~pR~YSIsSsp~~--~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~-F~lp~----~~ 465 (618)
T 3qe2_A 393 QARYYSIASSSKV--HPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPF----KA 465 (618)
T ss_dssp CCEEEECCSCTTT--CTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECCS-CCCCS----ST
T ss_pred ccceeccccCCcC--CCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecCc-ccCCC----CC
Confidence 4799999999853 14788887743 12789999999888 88 9999999996 86653 35
Q ss_pred CCeEEEEEeCcchhHHHHHHHHhhc---cC-CCCcEEEEEccCCc-cccccHHHHHHHHhCC-c-EEEEEEecCCCCCCc
Q 022710 168 YPTVLIFATGSGISPIRSLIESGFS---SK-ERSDVRLYYGARNL-KRMAYQDKFKEWESSG-V-KIVPVLSQPDGNWSG 240 (293)
Q Consensus 168 ~~~ivlia~GtGIaP~~sll~~~~~---~~-~~~~v~l~~~~r~~-~~~~~~~~l~~l~~~~-i-~~~~~~s~~~~~~~~ 240 (293)
..+++|||+||||||+++++++... .+ ...++.|+|++|+. .+++|+++|++|...+ + ++++++|++++
T Consensus 466 ~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~l~~l~~a~Srd~~---- 541 (618)
T 3qe2_A 466 TTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGALTQLNVAFSREQS---- 541 (618)
T ss_dssp TSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSSSEEEEEETTSSS----
T ss_pred CCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCCCcEEEEEEcCCCC----
Confidence 6789999999999999999999763 11 34789999999999 5999999999998753 4 88999998753
Q ss_pred cccccchHHHhhhc----cCCCCCcEEEEeCCh-HHHHHHHHHHHHc
Q 022710 241 ETGYVQAAFSRAKK----IFNPQGTGVVLCGQK-QMAEEVTSIVLAE 282 (293)
Q Consensus 241 ~~g~v~~~~~~~~~----~~~~~~~~v~vCGp~-~~~~~~~~~L~~~ 282 (293)
.++|+++.+.+... .. ..+..+|+|||+ .|++.+.++|.+.
T Consensus 542 ~k~yVqd~l~~~~~~l~~~l-~~~a~vYvCGp~~~M~~~V~~~L~~i 587 (618)
T 3qe2_A 542 HKVYVQHLLKQDREHLWKLI-EGGAHIYVCGDARNMARDVQNTFYDI 587 (618)
T ss_dssp SCCCHHHHHHHTHHHHHHHH-HHTCEEEEEEETTTHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhHHHHHHHH-hCCcEEEEECCchHHHHHHHHHHHHH
Confidence 37899888765311 11 246799999996 9999999887653
No 36
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.86 E-value=6.3e-22 Score=163.75 Aligned_cols=140 Identities=19% Similarity=0.282 Sum_probs=101.1
Q ss_pred EEEEeecCCCccccCCCCCCCCCeEEEEEeCcchhHHHHHHHHhhcc-------CCCCcEEEEEccCCccccc-cHHHHH
Q 022710 147 VEISQVMGRGFAVDRIQPPDEYPTVLIFATGSGISPIRSLIESGFSS-------KERSDVRLYYGARNLKRMA-YQDKFK 218 (293)
Q Consensus 147 v~v~gP~G~~f~l~~~~p~~~~~~ivlia~GtGIaP~~sll~~~~~~-------~~~~~v~l~~~~r~~~~~~-~~~~l~ 218 (293)
|.|.||+|. |..+. ..++++|||||||||||++++++++... ....+|+|+|++|+.++++ |.++|+
T Consensus 1 v~v~GP~G~-~~~~~----~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~ 75 (186)
T 3a1f_A 1 IAVDGPFGT-ASEDV----FSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQ 75 (186)
T ss_dssp CCTTSTTSH-HHHHH----TTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHH
T ss_pred CeEECCCCC-CccCh----hhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHH
Confidence 357899998 54431 2678999999999999999999998754 2467899999999999998 999999
Q ss_pred HHHhC--------CcEEEEEEecCCCCC------------Ccc--------ccccchH--HHhhhccCCCCCcEEEEeCC
Q 022710 219 EWESS--------GVKIVPVLSQPDGNW------------SGE--------TGYVQAA--FSRAKKIFNPQGTGVVLCGQ 268 (293)
Q Consensus 219 ~l~~~--------~i~~~~~~s~~~~~~------------~~~--------~g~v~~~--~~~~~~~~~~~~~~v~vCGp 268 (293)
++... +++++++++++.... .+. .|+++.. +..........+..||+|||
T Consensus 76 ~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP 155 (186)
T 3a1f_A 76 LLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP 155 (186)
T ss_dssp HHHHHHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred HHHHHHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 98752 689999988753210 111 1454432 22111111124688999999
Q ss_pred hHHHHHHHHHHHHcCCC-ccCeec
Q 022710 269 KQMAEEVTSIVLAEGVS-SEKILK 291 (293)
Q Consensus 269 ~~~~~~~~~~L~~~Gv~-~~~I~~ 291 (293)
++|++.+++.|.+.|+. ++.+++
T Consensus 156 ~~m~~~v~~~l~~~g~~~~~~~~~ 179 (186)
T 3a1f_A 156 EALAETLSKQSISNSESGPRGVHF 179 (186)
T ss_dssp HHHHHHHHHHHHHTCCCSTTCCEE
T ss_pred HHHHHHHHHHHHHhhccCCCCCEE
Confidence 99999999999999985 444443
No 37
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=77.38 E-value=4.7 Score=31.34 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=48.1
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
....|..|.+...+.++...|.|..+...+...+. +.|-.. .+..+.|-..++||+|.+..|-|.
T Consensus 82 ~V~~Gs~V~l~~~~~~~~~~~~iVg~~ead~~~~~--~~IS~~-SPlG~ALlGk~~GD~v~~~~p~G~ 146 (156)
T 2f23_A 82 VIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTP--MKISDA-SPMGKALLGHRVGDVLSLDTPKGK 146 (156)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEECGGGCBTTSSS--EEEETT-SHHHHHHTTCCTTCEEEEEETTEE
T ss_pred EEEeCcEEEEEEcCCCCEEEEEEEChhHcCcCCCC--EEECCC-CHHHHHHcCCCCCCEEEEEcCCCc
Confidence 46889999998866677777888776654322442 333322 688899999999999999999885
No 38
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=66.58 E-value=7 Score=29.79 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=45.4
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
....|..|.+...+.++...|+|..+...+...+ .|-. ..+..+.|-..++||+|.+..|-|.
T Consensus 56 ~V~~Gs~V~l~d~~~g~~~~~~iVg~~ead~~~~----~IS~-~SPlG~ALlGk~vGD~v~v~~P~G~ 118 (141)
T 2pn0_A 56 VVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGE----KISI-LAPVGSALLGLAQGDEIEWPKPGGG 118 (141)
T ss_dssp BCCTTCEEEEEETTTCCEEEEEEECGGGCCSSSC----EEET-TSTTHHHHTTCBTTCEEEEECTTSS
T ss_pred EEEeCcEEEEEECCCCCEEEEEEECHhHcCccCC----EEcC-CCHHHHHHcCCCCCCEEEEEcCCCC
Confidence 4688999999876666667788887664311111 2222 2588888999999999999999993
No 39
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=65.35 E-value=16 Score=27.52 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=44.2
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMG 154 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G 154 (293)
....|..|.+...+.++...|+|..+...+...+ .|-. ..+..+.|-..++||+|.+..|-|
T Consensus 53 ~V~~Gs~V~l~~~~~g~~~~~~iVg~~ead~~~~----~IS~-~SPlG~ALlGk~~GD~v~v~~p~G 114 (136)
T 3bmb_A 53 VVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNT----QLSV-MAPVGAALLGLRVGDSIHWELPGG 114 (136)
T ss_dssp BCCTTCEEEEEETTTCCEEEEEEECGGGCCCTTT----EEET-TSHHHHHHTTCBTTCEEEEEETTT
T ss_pred EEEeCcEEEEEECCCCCEEEEEEEChHHcCcccc----EecC-CCHHHHHHcCCCCCCEEEEEcCCC
Confidence 3578999999876656667788876554322123 2221 257888898999999999999999
No 40
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=64.26 E-value=5.7 Score=30.97 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=44.5
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
....|..|.+.. +.++...|+|..+...+...+ .|- ...+..+.|-..++||+|.+..|-|.
T Consensus 84 ~V~~Gs~V~l~~-~~g~~~~y~iVg~~ead~~~~----~IS-~~SPlg~ALlGk~vGD~v~v~~P~G~ 145 (158)
T 2p4v_A 84 KVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKD----YIS-IDSPMARALLKKEVGDLAVVNTPAGE 145 (158)
T ss_dssp SCSSSCEEEEEC-TTCCCEEEEBCCSTTCCSSSC----CBC-TTSHHHHHSTTCCTTCEEEEECSSCE
T ss_pred EEeccEEEEEEE-CCCCEEEEEEECHHHcCccCC----eec-CCCHHHHHhcCCCCCCEEEEEcCCCc
Confidence 468899999987 667777899987765321122 111 11477788888999999999999885
No 41
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=59.87 E-value=9.3 Score=33.67 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=24.9
Q ss_pred CeEEEEEeCcc--hhHHHHHHHHhhccCCCCcEEEE
Q 022710 169 PTVLIFATGSG--ISPIRSLIESGFSSKERSDVRLY 202 (293)
Q Consensus 169 ~~ivlia~GtG--IaP~~sll~~~~~~~~~~~v~l~ 202 (293)
++|++.||||| |.|.+++.+++.+.+ .+|.++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g--~~V~~v 36 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG--YAVHWL 36 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT--CEEEEE
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC--CEEEEE
Confidence 57999999996 899999999997543 455544
No 42
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=57.45 E-value=7.1 Score=30.39 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=40.9
Q ss_pred CCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHhhhcCCCCCEEEEEeecCC
Q 022710 88 HTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEVLCGLKKGDVVEISQVMGR 155 (293)
Q Consensus 88 ~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~L~~l~~Gd~v~v~gP~G~ 155 (293)
....|..|.+...+.+....|+|..+...+...+ .|-. ..+..+.|-..++||+|.+..|-|.
T Consensus 85 ~V~~Gs~V~l~~~~~~~~~~y~iVg~~ead~~~~----~IS~-~SPlG~ALlGk~~GD~v~v~~p~G~ 147 (158)
T 1grj_A 85 RVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQN----LISV-NSPIARGLIGKEEDDVVVIKTPGGE 147 (158)
T ss_dssp BCCTTCEEEEEETTTTEEEEEEEECTTTCBGGGT----EEES-SSHHHHHHTTCBTTCEECC------
T ss_pred EEEeCcEEEEEECCCCCEEEEEEECHHHhCCcCC----EEcC-CCHHHHHHcCCCCCCEEEEEcCCCc
Confidence 3688999999876667777899987764311112 2222 2588888999999999999999886
No 43
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=48.88 E-value=81 Score=25.07 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=50.7
Q ss_pred eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchH
Q 022710 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAE 136 (293)
Q Consensus 57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~ 136 (293)
.-++|.++++.. +-..++++.+ +++ ..+..++.+|.+. + -.+|+.... ++.|.+.+-.+. .-..
T Consensus 104 g~g~i~~i~~~~-~~~~~~i~~p--~~l-~~~i~~KgSIavd----G--vSLTV~~v~-----~~~f~v~lIp~T-l~~T 167 (186)
T 3ddy_A 104 GTALVAAIEEND-AGFSVLIDIP--KGL-AENLTVKDDIGID----G--ISLPITDMS-----DSIITLNYSRDL-LAST 167 (186)
T ss_dssp EEEEEEEEECCS-SEEEEEEECC--TTT-CSCCCTTCEEEET----T--EEEECCEEE-----TTEEEEEEEGGG-GGTS
T ss_pred EEEEEEEEEECC-CeEEEEEEcC--HHH-hhccccCcEEEEE----e--EEEEEEeec-----CCEEEEEEcHHH-Hhhc
Confidence 357888888776 4556888874 333 2356777776553 2 226776655 566777666542 2233
Q ss_pred hhhcCCCCCEEEEEe
Q 022710 137 VLCGLKKGDVVEISQ 151 (293)
Q Consensus 137 ~L~~l~~Gd~v~v~g 151 (293)
-|..+++||.|.++-
T Consensus 168 ~l~~~~~Gd~VNlE~ 182 (186)
T 3ddy_A 168 NIASLAKDVKVNVEI 182 (186)
T ss_dssp SGGGCCTTCEEEEEE
T ss_pred ccccCccCCEEEEEE
Confidence 477899999999874
No 44
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=46.68 E-value=36 Score=30.59 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=29.2
Q ss_pred eeeeEeEeeeCCC---CeEEEEEEcCCCccccccCCCCCeEEEEEEc
Q 022710 57 TPTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVV 100 (293)
Q Consensus 57 ~~~~v~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~ 100 (293)
..++|..+....+ .++.+++.++++. ..++||+++.+.+.
T Consensus 276 ~~G~V~~I~p~~d~~t~t~~v~i~l~n~~----~~L~pGm~v~v~i~ 318 (413)
T 3ne5_B 276 LTIRKWTLLPGVDAATRTLQLRLEVDNAD----EALKPGMNAWLQLN 318 (413)
T ss_dssp EEECCCEECSCCBTTTTEEEEEEEEECTT----CCSCTTCEEEEEEE
T ss_pred EEEEEEEEeCccCCCCcEEEEEEEEECCC----CccCCCCEEEEEEe
Confidence 3677777765433 6788888887643 35799999999987
No 45
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=44.12 E-value=75 Score=25.79 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=28.8
Q ss_pred CeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCC
Q 022710 169 PTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARN 207 (293)
Q Consensus 169 ~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~ 207 (293)
.++++++.|.| +-+.++++......-..+|.++++.+.
T Consensus 3 ~riavl~Sg~G-snl~ali~~~~~~~l~~eI~~Visn~~ 40 (211)
T 3p9x_A 3 KRVAIFASGSG-TNAEAIIQSQKAGQLPCEVALLITDKP 40 (211)
T ss_dssp CEEEEECCTTC-HHHHHHHHHHHTTCCSSEEEEEEESCS
T ss_pred CEEEEEEeCCc-hHHHHHHHHHHcCCCCcEEEEEEECCC
Confidence 36888999999 668889988754444468888888663
No 46
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=44.00 E-value=88 Score=22.53 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=48.5
Q ss_pred HHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEE
Q 022710 184 RSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGV 263 (293)
Q Consensus 184 ~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v 263 (293)
.-+++.+. ...-++.|+|+-++... -+++|++++..|+.+..+-...+ ....+.+.... .+...-..+
T Consensus 16 keivreik--rqgvrvvllysdqdekr--rrerleefekqgvdvrtvedked-----frenireiwer---ypqldvvvi 83 (162)
T 2l82_A 16 KEIVREIK--RQGVRVVLLYSDQDEKR--RRERLEEFEKQGVDVRTVEDKED-----FRENIREIWER---YPQLDVVVI 83 (162)
T ss_dssp HHHHHHHH--HTTCEEEEEECCSCHHH--HHHHHHHHHTTTCEEEECCSHHH-----HHHHHHHHHHH---CTTCCEEEE
T ss_pred HHHHHHHH--hCCeEEEEEecCchHHH--HHHHHHHHHHcCCceeeeccHHH-----HHHHHHHHHHh---CCCCcEEEE
Confidence 34455543 24478899999886654 67888888888887755522211 12222222222 222222333
Q ss_pred EEeCChHHHHHHHHHHHHcCCC
Q 022710 264 VLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 264 ~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
+-......++++.+..++.|+.
T Consensus 84 vttddkewikdfieeakergve 105 (162)
T 2l82_A 84 VTTDDKEWIKDFIEEAKERGVE 105 (162)
T ss_dssp EECCCHHHHHHHHHHHHHTTCE
T ss_pred EecCcHHHHHHHHHHHHhcCcE
Confidence 3334455666666666666653
No 47
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=41.48 E-value=1.8e+02 Score=25.29 Aligned_cols=84 Identities=7% Similarity=-0.025 Sum_probs=46.9
Q ss_pred CCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHHHH
Q 022710 196 RSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAEEV 275 (293)
Q Consensus 196 ~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~~~ 275 (293)
-++|-++| ..+...-...+-.+.+...|+++.....-+..+ .......+.+ +.......++++|.......+
T Consensus 130 w~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~----~~d~~~~l~~---ik~~~~~vii~~~~~~~~~~i 201 (389)
T 3o21_A 130 WEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIKD----VQEFRRIIEE---MDRRQEKRYLIDCEVERINTI 201 (389)
T ss_dssp CCEEEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCC----THHHHHHHHH---HHTTTCCEEEEESCHHHHHHH
T ss_pred CCEEEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCC----cHHHHHHHHH---HHhCCCeEEEEECCHHHHHHH
Confidence 36888888 443333233333345566688775543221110 0112233333 222344668888888888888
Q ss_pred HHHHHHcCCCcc
Q 022710 276 TSIVLAEGVSSE 287 (293)
Q Consensus 276 ~~~L~~~Gv~~~ 287 (293)
.+.+++.|+...
T Consensus 202 ~~qa~~~g~~~~ 213 (389)
T 3o21_A 202 LEQVVILGKHSR 213 (389)
T ss_dssp HHHHHHHCSCST
T ss_pred HHHHHHcCcccC
Confidence 888888898654
No 48
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=40.92 E-value=44 Score=29.62 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=33.0
Q ss_pred ceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 56 WTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 56 ~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
...++|++++.+++ +++++.|++++. ...|+||+++-|.-.+.
T Consensus 11 ~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~----~~~y~~GD~l~v~p~N~ 58 (374)
T 1ddg_A 11 PLVASLSVNQKITGRNSEKDVRHIEIDLGDS----GLRYQPGDALGVWYQND 58 (374)
T ss_dssp CEEEEEEEEEECSCTTCSSEEEEEEEECTTS----CCCCCTTCEEEECCCCC
T ss_pred CEEEEEEEEEEeCCCCCCceEEEEEEEcCCC----CcccCCCCEEEEEcCCC
Confidence 34578888888775 689999998643 25799999999987653
No 49
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=40.07 E-value=52 Score=29.81 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=36.4
Q ss_pred CCCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
..+....++|+.++.+++ +++++.|++++..+ ..|+||.++-|...+.
T Consensus 26 ~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~---~~Y~~GD~l~V~p~N~ 78 (435)
T 1f20_A 26 HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQE---LQYQPGDHLGVFPGNH 78 (435)
T ss_dssp HTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGG---GCCCTTCEEEECCCCC
T ss_pred ccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCC---CcCCCCCEEEEEecCC
Confidence 334456789999888874 69999999865432 5799999999987644
No 50
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=39.27 E-value=64 Score=30.21 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=35.4
Q ss_pred CCCCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 52 DTTVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
+......++|+.++.++. +++++.|++++. ...|+||+++-|...+.
T Consensus 110 ~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~----~l~Y~~GD~l~V~P~N~ 161 (539)
T 2qtl_A 110 SADPVFQVPISKAVQLTTNDAIKTTLLVELDISNT----DFSYQPGDAFSVICPNS 161 (539)
T ss_dssp ---CCEEEEEEEEEECSCTTCSSCEEEEEEECTTS----CCCCCTTCEEEEECCCC
T ss_pred CCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCC----CcCcCCCCEEEEEeCCC
Confidence 334456789999988874 799999998753 25799999999997654
No 51
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=39.20 E-value=1.5e+02 Score=25.40 Aligned_cols=95 Identities=19% Similarity=0.083 Sum_probs=49.0
Q ss_pred HHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCc
Q 022710 183 IRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGT 261 (293)
Q Consensus 183 ~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~ 261 (293)
...+++.+.+.-..++|-++|....... -..+.++ .++..|+++.....-+... ......+.+. ......
T Consensus 130 ~~~~~~~l~~~~g~~~iaii~~~~~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~-----~d~~~~~~~l---~~~~~d 200 (392)
T 3lkb_A 130 VVALLEYIAREKKGAKVALVVHPSPFGR-APVEDARKAARELGLQIVDVQEVGSGN-----LDNTALLKRF---EQAGVE 200 (392)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECSSHHHH-TTHHHHHHHHHHHTCEEEEEEECCTTC-----CCCHHHHHHH---HHTTCC
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCchhh-hHHHHHHHHHHHcCCeEEEEEeeCCCC-----cCHHHHHHHH---HhcCCC
Confidence 3345555543313478888885322111 1222232 3344477765443222111 1122222221 112335
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCCc
Q 022710 262 GVVLCGQKQMAEEVTSIVLAEGVSS 286 (293)
Q Consensus 262 ~v~vCGp~~~~~~~~~~L~~~Gv~~ 286 (293)
.+|+|+...+...+.+.+++.|+..
T Consensus 201 av~~~~~~~~a~~~~~~~~~~g~~~ 225 (392)
T 3lkb_A 201 YVVHQNVAGPVANILKDAKRLGLKM 225 (392)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCC
T ss_pred EEEEecCcchHHHHHHHHHHcCCCc
Confidence 6777899999999999999999854
No 52
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=37.81 E-value=1e+02 Score=26.62 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=30.4
Q ss_pred eeeeEeEeeeCCC---CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 57 TPTPLAEISPAAE---SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 57 ~~~~v~~~~~~~~---~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
..++|..+....+ .++.+++.++++. ..+.||+++.+.+...
T Consensus 239 ~~g~v~~i~~~~d~~~~~~~v~~~~~~~~----~~l~~G~~~~v~i~~~ 283 (359)
T 3lnn_A 239 QPGKVRYVGQILDADTRTTKVRMVFDNPD----GRLRPGMFAQATFLSQ 283 (359)
T ss_dssp EEEEEEECCCCCCTTSCCEEEEEEEECSS----CCCCTTCEEEEEEECC
T ss_pred EEEEEEEEecccCCCCcEEEEEEEecCCC----CCcCCCCEEEEEEecC
Confidence 3788887765543 5777777776543 3579999999999754
No 53
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=37.48 E-value=88 Score=26.49 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=22.2
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCCc
Q 022710 260 GTGVVLCGQKQMAEEVTSIVLAEGVSS 286 (293)
Q Consensus 260 ~~~v~vCGp~~~~~~~~~~L~~~Gv~~ 286 (293)
...+++|+...+...+.+.+++.|+..
T Consensus 194 ~d~v~~~~~~~~a~~~~~~~~~~g~~~ 220 (356)
T 3ipc_A 194 VSIIYWGGLHTEAGLIIRQAADQGLKA 220 (356)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEEccCchHHHHHHHHHHHCCCCC
Confidence 456888999988888889999988864
No 54
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=36.91 E-value=17 Score=26.43 Aligned_cols=25 Identities=12% Similarity=0.281 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.|.+ +|+++++|+++|
T Consensus 74 ~~~s~~i~~~l~~~Lgi~~~RiyI~f 99 (117)
T 3kan_A 74 RSHSAHFFEFLTKELALGQDRILIRF 99 (117)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCcCeEEEEE
Confidence 4677888888866 599999999876
No 55
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=35.84 E-value=74 Score=29.09 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=36.3
Q ss_pred CCCCceeeeEeEeeeCCC----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 52 DTTVWTPTPLAEISPAAE----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
+.+....++|+.++.++. +++++.|++++. ...|+||.++-|...+.
T Consensus 58 ~~~~p~~a~v~~n~~Lt~~~~r~~~hie~dl~~s----~l~Y~~GD~l~V~p~N~ 108 (458)
T 3qfs_A 58 DAKNPFLAAVTTNRKLNQGTERHLMHLELDISDS----KIRYESGDHVAVYPAND 108 (458)
T ss_dssp CSSSCEEEEEEEEEECCSSSSSCEEEEEEECTTS----CCCCCTTCEEEECCCCC
T ss_pred CCCCCEEEEEEEEEEcCCCCCCCEEEEEEEeCCC----CcccCCCCEEEEEeeCC
Confidence 344456788999888864 799999998753 25899999999986643
No 56
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=35.58 E-value=19 Score=25.97 Aligned_cols=25 Identities=8% Similarity=0.328 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.|.+ +|+++++|++.|
T Consensus 73 ~~~s~~i~~~l~~~Lgi~~~riyI~f 98 (114)
T 3djh_A 73 RSYSKLLCGLLAERLRISPDRVYINY 98 (114)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCcceEEEEE
Confidence 5688888888866 599999999876
No 57
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=33.41 E-value=1.3e+02 Score=24.20 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=33.5
Q ss_pred eEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEE
Q 022710 170 TVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPV 230 (293)
Q Consensus 170 ~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~ 230 (293)
++++++.|.| +-+.++++.........+|.++++.++... - ++.-...|+.++.+
T Consensus 2 riaVl~SG~G-s~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~--~---~~~A~~~gIp~~~~ 56 (209)
T 1meo_A 2 RVAVLISGTG-SNLQALIDSTREPNSSAQIDIVISNKAAVA--G---LDKAERAGIPTRVI 56 (209)
T ss_dssp EEEEEESSSC-TTHHHHHHHHHSTTCSCEEEEEEESSTTCH--H---HHHHHHTTCCEEEC
T ss_pred eEEEEEECCc-hHHHHHHHHHhcCCCCcEEEEEEeCCCChH--H---HHHHHHcCCCEEEE
Confidence 5888889998 556677776544333467888888774432 1 22223347766544
No 58
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=32.50 E-value=1.1e+02 Score=24.82 Aligned_cols=102 Identities=13% Similarity=0.215 Sum_probs=55.3
Q ss_pred chhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEEEecCCC-CCCc--cccc-c--chHHHhh
Q 022710 179 GISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPVLSQPDG-NWSG--ETGY-V--QAAFSRA 252 (293)
Q Consensus 179 GIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~~s~~~~-~~~~--~~g~-v--~~~~~~~ 252 (293)
-+.-++..++..+..+... =.+++|+-+....+.+.. .+...++++.-+++..+. .... ..|. + .+.+.+
T Consensus 67 ~V~~L~~~i~~~Lg~~~~~-~V~IvGaG~lG~aLa~~~--~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~- 142 (212)
T 3keo_A 67 DVKKLMNFFAEILNDHSTT-NVMLVGCGNIGRALLHYR--FHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTIND- 142 (212)
T ss_dssp EHHHHHHHHHHHTTTTSCE-EEEEECCSHHHHHHTTCC--CCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHH-
T ss_pred EHHHHHHHHHHHhCCCCCC-EEEEECcCHHHHHHHHhh--hcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHH-
Confidence 4555566666655333322 346677766555432221 112346777777665443 2111 0111 1 122222
Q ss_pred hccCCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 253 KKIFNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 253 ~~~~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
......-..+++|-|..-.+++.+.|.+.|+.
T Consensus 143 -~v~~~~Id~vIIAvPs~~aq~v~d~lv~~GIk 174 (212)
T 3keo_A 143 -HLIDSDIETAILTVPSTEAQEVADILVKAGIK 174 (212)
T ss_dssp -HC-CCSCCEEEECSCGGGHHHHHHHHHHHTCC
T ss_pred -HHHHcCCCEEEEecCchhHHHHHHHHHHcCCC
Confidence 12233457899999999999999999999984
No 59
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=31.89 E-value=30 Score=23.70 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=14.8
Q ss_pred CCCCCEEEEEeecCCCcc
Q 022710 141 LKKGDVVEISQVMGRGFA 158 (293)
Q Consensus 141 l~~Gd~v~v~gP~G~~f~ 158 (293)
+.+||.|++.+|.|..+.
T Consensus 30 f~~GD~iEi~~P~g~~~~ 47 (89)
T 4he6_A 30 FRPGDEVEFFGPEIENFT 47 (89)
T ss_dssp BCTTCEEEEESTTSCCEE
T ss_pred cCCCCEEEEEcCCCCcEE
Confidence 789999999999994443
No 60
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=31.70 E-value=81 Score=28.10 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=32.9
Q ss_pred ceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 56 WTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 56 ~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
-..++|+.++.++. +++++.|++++ ...|+||.++-|.-.+.
T Consensus 6 ~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~-----~~~Y~~GD~l~v~p~N~ 52 (393)
T 4dql_A 6 AFSTNVVASKELQQPGSARSTRHLEIELPK-----EASYQEGDHLGVIPRNY 52 (393)
T ss_dssp CEEEEEEEEEECSCTTCSCCEEEEEEECCT-----TCCCCTTCEEEECCCCC
T ss_pred cEEEEEEeEEEcCCCCCCceEEEEEEECCC-----CCccCCCCEEEEEccCC
Confidence 34688888888864 79999999863 25799999999986543
No 61
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=31.35 E-value=1.4e+02 Score=23.98 Aligned_cols=55 Identities=15% Similarity=0.337 Sum_probs=34.1
Q ss_pred eEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHHhCCcEEEEE
Q 022710 170 TVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWESSGVKIVPV 230 (293)
Q Consensus 170 ~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~i~~~~~ 230 (293)
++++++.|.| +-+.++++++....-..+|.++++.+.... . ++.-...|+.++.+
T Consensus 2 ri~vl~Sg~g-snl~ali~~~~~~~~~~~i~~Vis~~~~~~--~---~~~A~~~gIp~~~~ 56 (212)
T 1jkx_A 2 NIVVLISGNG-SNLQAIIDACKTNKIKGTVRAVFSNKADAF--G---LERARQAGIATHTL 56 (212)
T ss_dssp EEEEEESSCC-HHHHHHHHHHHTTSSSSEEEEEEESCTTCH--H---HHHHHHTTCEEEEC
T ss_pred EEEEEEECCc-HHHHHHHHHHHcCCCCceEEEEEeCCCchH--H---HHHHHHcCCcEEEe
Confidence 5889999999 557778887654433467888888764322 1 22222347776553
No 62
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=31.14 E-value=24 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.|.+ .||++++|+++|
T Consensus 95 ~~~s~~i~~~l~~~LgI~~~riyI~f 120 (133)
T 3fwu_A 95 EKVTSIVTAAITKECGIVADRIFVLY 120 (133)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhCcChhhEEEEE
Confidence 5788888888866 599999999876
No 63
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=30.93 E-value=1.9e+02 Score=25.21 Aligned_cols=81 Identities=9% Similarity=0.000 Sum_probs=46.2
Q ss_pred CCCcEEEEEccCCccccccHHHHHH-HHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHH
Q 022710 195 ERSDVRLYYGARNLKRMAYQDKFKE-WESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273 (293)
Q Consensus 195 ~~~~v~l~~~~r~~~~~~~~~~l~~-l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~ 273 (293)
.-+++-++|...+... .+.+.|.+ +...|+++.....-+.+ ....+.+ +...+...+++||......
T Consensus 153 g~~~v~ii~~~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~d--------~~~~l~~---i~~~~~~vii~~~~~~~~~ 220 (433)
T 4f11_A 153 QWKRVGTLTQDVQRFS-EVRNDLTGVLYGEDIEISDTESFSND--------PCTSVKK---LKGNDVRIILGQFDQNMAA 220 (433)
T ss_dssp TCCEEEEEEESSHHHH-HHHHHHHHHSSSSSCEEEEEEEESSC--------CHHHHHH---HHHTTCCEEEEECCHHHHH
T ss_pred CCcEEEEEEecchhhH-HHHHHHHHHHHHcCceEEEEeccCcC--------HHHHHHH---HhhCCCeEEEEeCcHHHHH
Confidence 3467888887432111 23333332 33347776554332221 2222322 1113456788999999998
Q ss_pred HHHHHHHHcCCCcc
Q 022710 274 EVTSIVLAEGVSSE 287 (293)
Q Consensus 274 ~~~~~L~~~Gv~~~ 287 (293)
.+.+.+++.|+...
T Consensus 221 ~~~~~a~~~g~~~~ 234 (433)
T 4f11_A 221 KVFCCAYEENMYGS 234 (433)
T ss_dssp HHHHHHHHTTCCST
T ss_pred HHHHHHHHcCCCCC
Confidence 89999999998764
No 64
>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1
Probab=30.90 E-value=28 Score=27.96 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=61.1
Q ss_pred ecCCCCCCCCCCeEEEEEEEeCC-cchHhhhcCCC------CCEEEEEeecC--CCccccCCCCCCCCCeEEEEEeCcch
Q 022710 110 IASPPSFASASGAFEFLVKSVAG-STAEVLCGLKK------GDVVEISQVMG--RGFAVDRIQPPDEYPTVLIFATGSGI 180 (293)
Q Consensus 110 i~s~p~~~~~~~~~~~~Vk~~~G-~~s~~L~~l~~------Gd~v~v~gP~G--~~f~l~~~~p~~~~~~ivlia~GtGI 180 (293)
||.... +|.+-|+|.+-.+ .....+.++.. ...|.+.||.. .+|.+... ......-+-|..|+.+
T Consensus 29 i~eH~~----~Ga~GlIlNrP~~~~l~~ll~~l~~~~~~~~~~~v~~GGPV~~~rgfvLH~~--~~~~~~s~~v~~gv~l 102 (192)
T 2ew0_A 29 LARHDE----EGAQGIIINRPAGIQIKELLNDLDIDADNVNPHEVLQGGPLRPEAGFVLHTG--QPTWHSSIAVGENVCI 102 (192)
T ss_dssp EEEEET----TEEEEEECSCEEEEEHHHHHHHTTCCCTTCCCCEEEECCSEEEEEEEEEEES--CCCSSSEEEEETTEEE
T ss_pred EEEeCC----CceeEEEecCCCCCCHHHHHHhhCcccccCCCCeeEECCCcCCCcEEEEEeC--CCCCCCceEecCCeee
Confidence 555443 7788888765422 33344444332 55788888876 34655431 1134557888899888
Q ss_pred hHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH
Q 022710 181 SPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK 218 (293)
Q Consensus 181 aP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~ 218 (293)
+.-..+++.+.......++.++.+.-.=..=...+|+.
T Consensus 103 t~s~d~l~~i~~~~~p~~~~~flGYaGW~~GQLe~Ei~ 140 (192)
T 2ew0_A 103 TTSKDILDAIAHNEGVGRYQIALGYASWGKNQLEDEIA 140 (192)
T ss_dssp ECSSHHHHHHHTTCSCCSEEEEEEEEEECTTHHHHHHH
T ss_pred eCCHHHHHHHhcCCCCccEEEEEeecCCCHHHHHHHHH
Confidence 88888888876543335666655544333334555654
No 65
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=29.56 E-value=27 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.|.+ .|+++++|+++|
T Consensus 95 ~~~s~~i~~~l~~~LgI~~~rvyI~f 120 (133)
T 3fwt_A 95 KMMTPRIAAAITKECGIPAERIYVFY 120 (133)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhCcChhhEEEEE
Confidence 4788888888865 599999999876
No 66
>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A*
Probab=29.21 E-value=1.7e+02 Score=23.18 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=46.6
Q ss_pred eeeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchH
Q 022710 57 TPTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAE 136 (293)
Q Consensus 57 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~ 136 (293)
--++|.++++..+ -..++|+.+. ++. .+.-+.-+|.+. +. ..|+.... ++.|++.+-.+ -.-..
T Consensus 104 g~g~i~~~~~~~~-~~~~~~~~p~--~~~-~yi~~KGsIavd----Gv--SLTV~~v~-----~~~f~v~lIP~-T~~~T 167 (190)
T 3a35_A 104 GVATVDNITEEED-RLKVYIKIPK--DLI-ENILSEDHIGIN----GV--SHSIEEIS-----DDIIFINYPKN-LSITT 167 (190)
T ss_dssp EEEEEEEEEEETT-EEEEEEECCT--TSC-SCCCTTSEEEET----TE--EEECCEEE-----TTEEEEEEETT-HHHHS
T ss_pred EEEEEEEEEEcCC-eEEEEEEeCH--HHH-hcCCcCCEEEEC----CE--EEEEEEec-----CCEEEEEEeHH-HHhhc
Confidence 3478888887764 5678887753 332 345555555543 22 25666554 45565555433 12223
Q ss_pred hhhcCCCCCEEEEE
Q 022710 137 VLCGLKKGDVVEIS 150 (293)
Q Consensus 137 ~L~~l~~Gd~v~v~ 150 (293)
-|..+++||.|.++
T Consensus 168 ~l~~~~~Gd~VNlE 181 (190)
T 3a35_A 168 NLGTLEKGSDVNVE 181 (190)
T ss_dssp GGGGCCTTCEEEEE
T ss_pred ccccCcCCCEEEEe
Confidence 47789999999987
No 67
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=29.21 E-value=27 Score=26.13 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.|.+ .|+++++|+++|
T Consensus 95 ~~~s~~i~~~l~~~Lgi~~~riyI~f 120 (135)
T 3t5s_A 95 PSISAAITGCLTQHFKVKPERVYISF 120 (135)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred chHHHHHHHHHHHhcccCccEEEEEe
Confidence 6888999999966 599999999876
No 68
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=28.79 E-value=29 Score=24.90 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.|.+ .|+++++|++.|
T Consensus 74 ~~l~~~i~~~l~~~Lgi~~~riyI~f 99 (114)
T 4dh4_A 74 CKIAAALSAACERHLGVPKNRIYTTF 99 (114)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCcccEEEEE
Confidence 5788888888866 599999999875
No 69
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=28.44 E-value=2.7e+02 Score=23.46 Aligned_cols=95 Identities=11% Similarity=0.114 Sum_probs=49.8
Q ss_pred HHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCc
Q 022710 183 IRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGT 261 (293)
Q Consensus 183 ~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~ 261 (293)
...+++.+.+.-..+++-++|...+.......+.++ .++..|+++.... -+... ......+.+. ......
T Consensus 136 ~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~~-----~d~~~~~~~l---~~~~~d 206 (366)
T 3td9_A 136 GAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSGD-----QDFSAQLSVA---MSFNPD 206 (366)
T ss_dssp HHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTTC-----CCCHHHHHHH---HHTCCS
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCCC-----ccHHHHHHHH---HhcCCC
Confidence 344555554332346888888644332222233333 3445577765443 21110 1122222221 112335
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCCc
Q 022710 262 GVVLCGQKQMAEEVTSIVLAEGVSS 286 (293)
Q Consensus 262 ~v~vCGp~~~~~~~~~~L~~~Gv~~ 286 (293)
.+|+++...+...+.+.+++.|+..
T Consensus 207 ~v~~~~~~~~a~~~~~~~~~~g~~~ 231 (366)
T 3td9_A 207 AIYITGYYPEIALISRQARQLGFTG 231 (366)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEccchhHHHHHHHHHHHcCCCc
Confidence 6677799888888999999999853
No 70
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=28.33 E-value=2.3e+02 Score=23.89 Aligned_cols=95 Identities=9% Similarity=-0.081 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH-HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCC
Q 022710 181 SPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF-KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ 259 (293)
Q Consensus 181 aP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l-~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~ 259 (293)
.-...+++++... ..++|-+++..... .....+.+ +.++..|+++.....-+... ......+.+.. ...
T Consensus 137 ~~~~~~~~~l~~~-g~~~ia~i~~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~~~~~~-----~d~~~~~~~l~---~~~ 206 (375)
T 4evq_A 137 QIGRATGDAMIKA-GLKKAVTVTWKYAA-GEEMVSGFKKSFTAGKGEVVKDITIAFPD-----VEFQSALAEIA---SLK 206 (375)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEEEESSHH-HHHHHHHHHHHHHHTTCEEEEEEEECTTC-----CCCHHHHHHHH---HHC
T ss_pred hHHHHHHHHHHHc-CCcEEEEEecCchH-HHHHHHHHHHHHHHcCCeEEEEEecCCCC-----ccHHHHHHHHH---hcC
Confidence 3445566666544 34678888742211 11112222 23444577764332222111 01222222210 112
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 260 GTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 260 ~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
...+|+|+...+...+.+.+++.|+.
T Consensus 207 ~dai~~~~~~~~a~~~~~~~~~~g~~ 232 (375)
T 4evq_A 207 PDCVYAFFSGGGALKFIKDYAAANLG 232 (375)
T ss_dssp CSEEEEECCTHHHHHHHHHHHHTTCC
T ss_pred CCEEEEecCcchHHHHHHHHHHcCCC
Confidence 34566768888988899999999976
No 71
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=27.96 E-value=32 Score=25.01 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCccCeeccC
Q 022710 274 EVTSIVLAEGVSSEKILKNF 293 (293)
Q Consensus 274 ~~~~~L~~~Gv~~~~I~~~~ 293 (293)
.+.+.|.+.|||+++|...|
T Consensus 79 gIa~eLv~~GVpk~dIVLgF 98 (112)
T 2nlv_A 79 NPAEELVMMGVPREDIVLGL 98 (112)
T ss_dssp CHHHHHHHTTCCGGGEEETT
T ss_pred cHHHHHHHcCCCHHHEEEcc
Confidence 46677889999999998765
No 72
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=27.94 E-value=1.5e+02 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=22.7
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 260 GTGVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 260 ~~~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
...+++|+...+...+.+.+++.|+...
T Consensus 197 ~d~v~~~~~~~~a~~~~~~~~~~g~~~~ 224 (364)
T 3lop_A 197 VQAIFLGATAEPAAQFVRQYRARGGEAQ 224 (364)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCCCE
T ss_pred CCEEEEecCcHHHHHHHHHHHHcCCCCe
Confidence 3568888998888889999999998643
No 73
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=27.22 E-value=1.7e+02 Score=23.83 Aligned_cols=38 Identities=13% Similarity=0.298 Sum_probs=26.1
Q ss_pred CCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccC
Q 022710 168 YPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206 (293)
Q Consensus 168 ~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r 206 (293)
..++++++.|+| +-+.++++.+.+.....+|.++++.+
T Consensus 22 ~~rI~~l~SG~g-~~~~~~l~~l~~~~~~~~I~~Vvt~~ 59 (229)
T 3auf_A 22 MIRIGVLISGSG-TNLQAILDGCREGRIPGRVAVVISDR 59 (229)
T ss_dssp CEEEEEEESSCC-HHHHHHHHHHHTTSSSEEEEEEEESS
T ss_pred CcEEEEEEeCCc-HHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 347999988888 45677788775433235677777765
No 74
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=27.00 E-value=75 Score=27.69 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCeEEEEEeCcchhHHHHHHHHhhccCCCCcEEEEEccC
Q 022710 168 YPTVLIFATGSGISPIRSLIESGFSSKERSDVRLYYGAR 206 (293)
Q Consensus 168 ~~~ivlia~GtGIaP~~sll~~~~~~~~~~~v~l~~~~r 206 (293)
..++|.|+||+|.+-++.=+++. ..+++.+..+-
T Consensus 4 ~~~IV~igGGtGl~~ll~gLk~~-----~~~iTaIVtva 37 (326)
T 2q7x_A 4 XPXITVIGGGTGSPVILXSLREX-----DVEIAAIVTVA 37 (326)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHS-----SCEEEEEECCB
T ss_pred CCeEEEEcCcccHHHHHHHhccC-----CCCeEEEEECc
Confidence 45799999999999999988875 24555555443
No 75
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=26.86 E-value=35 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCccCeeccC
Q 022710 274 EVTSIVLAEGVSSEKILKNF 293 (293)
Q Consensus 274 ~~~~~L~~~Gv~~~~I~~~~ 293 (293)
.+.+.|.+.|||+++|...|
T Consensus 81 gIa~eLv~~GVpk~dIVLgF 100 (114)
T 2nwv_A 81 GIATELMRLGVTNNDIVLAF 100 (114)
T ss_dssp CHHHHHHHTTCCGGGEEETT
T ss_pred cHHHHHHHcCCCHHHEEEcc
Confidence 46677889999999998765
No 76
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=26.54 E-value=32 Score=25.01 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCccCeeccC
Q 022710 274 EVTSIVLAEGVSSEKILKNF 293 (293)
Q Consensus 274 ~~~~~L~~~Gv~~~~I~~~~ 293 (293)
.+.+.|.+.|||+++|...|
T Consensus 79 gIa~eLv~~GVpk~dIVLgF 98 (112)
T 3d7q_A 79 DIALELMEMGIDKQDIVIGF 98 (112)
T ss_dssp CHHHHHHTTTCCGGGEEETT
T ss_pred cHHHHHHHcCCCHHHEEEcc
Confidence 46677889999999998765
No 77
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=26.32 E-value=41 Score=25.72 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=9.9
Q ss_pred CCCCeEEEEEEc
Q 022710 89 TRAGQYLQLRVV 100 (293)
Q Consensus 89 ~~pGQ~v~l~~~ 100 (293)
+++|.||++--.
T Consensus 99 l~~G~YVMV~G~ 110 (150)
T 3mxn_B 99 LVPGKYVMVMGV 110 (150)
T ss_dssp CSTTCEEEEEEE
T ss_pred cCCCCEEEEEEE
Confidence 689999998743
No 78
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=26.18 E-value=2.4e+02 Score=22.25 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=50.9
Q ss_pred eeeEeEeeeCCCCeEEEEEEcCCCccccccCCCCCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEEeCCcchHh
Q 022710 58 PTPLAEISPAAESLFHVSIDISDAPDIASSHTRAGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKSVAGSTAEV 137 (293)
Q Consensus 58 ~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~~~G~~s~~ 137 (293)
-++|.++++.++ -.+++++.+.. + ......|+.|-+. + -.+|+.... ++.|.+.+ .. -.--.-
T Consensus 9 vG~V~~i~~~~~-~~~l~i~~~~~--~-~~~~~~GdSIAvn----G--vCLTV~~~~-----~~~f~vdv-~E-Tl~~T~ 71 (186)
T 3ddy_A 9 RGVIRSISKSED-SQRHGIAFPEG--M-FQLVDVDTVMLVN----G--CSNTVVRIL-----GDMVYFDI-DQ-ALGTTT 71 (186)
T ss_dssp EEEEEEEEECSS-CEEEEEECCTT--T-GGGCCTTCEEEET----T--EEEEEEEEE-----TTEEEEEE-CT-TTTTSS
T ss_pred EEEEEEEEECCC-cEEEEEEeChH--H-hccCCCCCeEEEe----e--EEEEEEEEc-----CCEEEEEh-HH-hhhhCc
Confidence 367788877765 45788876432 1 2357899977664 2 235776655 56788887 43 222334
Q ss_pred hhcCCCCCEEEEEeec
Q 022710 138 LCGLKKGDVVEISQVM 153 (293)
Q Consensus 138 L~~l~~Gd~v~v~gP~ 153 (293)
|.++++||.|.++-..
T Consensus 72 Lg~l~~G~~VNLEral 87 (186)
T 3ddy_A 72 FDGLKEGDQVNLEIHP 87 (186)
T ss_dssp GGGCCTTCEEEEECCC
T ss_pred hhhcCCCCEEEECCCC
Confidence 7789999999996643
No 79
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=26.07 E-value=1.3e+02 Score=29.04 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=35.7
Q ss_pred CCceeeeEeEeeeCCC-----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 54 TVWTPTPLAEISPAAE-----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 54 ~~~~~~~v~~~~~~~~-----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
.....++|+.++.++. +++++.|++++..+ ..|+||.++-|...+.
T Consensus 249 ~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~---~~Y~~GD~l~V~P~N~ 299 (688)
T 1tll_A 249 KRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQE---LQYQPGDHLGVFPGNH 299 (688)
T ss_dssp SCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGG---GCCCTTCEEEECCCCC
T ss_pred CCceEEEEEeeeecCCCCCCceEEEEEEecCCCCC---CccCCCCEEEEecCCC
Confidence 3466799999988864 78999999865432 5799999999987643
No 80
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=25.53 E-value=2e+02 Score=24.21 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=46.7
Q ss_pred HHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCc
Q 022710 183 IRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGT 261 (293)
Q Consensus 183 ~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~ 261 (293)
...+++.+... ..+++-+++... .......+.+. .++..|+++.....-+... ......+.+.. .....
T Consensus 127 ~~~~~~~l~~~-g~~~ia~i~~~~-~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~-----~d~~~~~~~l~---~~~~d 196 (368)
T 4eyg_A 127 SIIIGDWAAKN-GIKKVATLTSDY-APGNDALAFFKERFTAGGGEIVEEIKVPLAN-----PDFAPFLQRMK---DAKPD 196 (368)
T ss_dssp HHHHHHHHHHT-TCCEEEEEEESS-HHHHHHHHHHHHHHHHTTCEEEEEEEECSSS-----CCCHHHHHHHH---HHCCS
T ss_pred HHHHHHHHHHc-CCCEEEEEecCc-hHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-----CcHHHHHHHHH---hcCCC
Confidence 34455555443 346788887321 11111122232 3444577765433222111 01222222210 11234
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 262 GVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 262 ~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
.++++++..+...+.+.+++.|+...
T Consensus 197 ~v~~~~~~~~a~~~~~~~~~~g~~~~ 222 (368)
T 4eyg_A 197 AMFVFVPAGQGGNFMKQFAERGLDKS 222 (368)
T ss_dssp EEEEECCTTCHHHHHHHHHHTTGGGT
T ss_pred EEEEeccchHHHHHHHHHHHcCCCcC
Confidence 56665777788888899999998754
No 81
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=25.05 E-value=2.8e+02 Score=22.58 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=51.6
Q ss_pred HHHHHHHHhhccCCCCcEEEEEccCCccccccHHHHHHHH----hCCcEE--EEEEecCCCCCCccccccchHHHhhhcc
Q 022710 182 PIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFKEWE----SSGVKI--VPVLSQPDGNWSGETGYVQAAFSRAKKI 255 (293)
Q Consensus 182 P~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~----~~~i~~--~~~~s~~~~~~~~~~g~v~~~~~~~~~~ 255 (293)
......+++.+.+. .+|-++.+..+.. ...++++.+. ..++.+ ..+.......+....+++.+.+.+ .+
T Consensus 118 ~g~~a~~~L~~~G~-~~I~~i~~~~~~~--~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l 192 (301)
T 3miz_A 118 GARDLTRYLLERGH-RRIGYIRLNPILL--GAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATE--ML 192 (301)
T ss_dssp HHHHHHHHHHTTTC-CSEEEEECCTTSH--HHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHH--HH
T ss_pred HHHHHHHHHHHcCC-CeEEEEecCccch--hHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHH--HH
Confidence 34566677665443 5777776654332 3333443332 224322 222222000122233442233333 12
Q ss_pred CCCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 256 FNPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 256 ~~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
.......+++|....|...+.++|++.|+.
T Consensus 193 ~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 193 KQDDRPTAIMSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp TSTTCCSEEEESSHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 223355688899999999999999999986
No 82
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=24.63 E-value=3.5e+02 Score=23.56 Aligned_cols=82 Identities=12% Similarity=0.191 Sum_probs=45.7
Q ss_pred CcEEEEEccCCcccc--ccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCcEEEEeCChHHHH
Q 022710 197 SDVRLYYGARNLKRM--AYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGTGVVLCGQKQMAE 273 (293)
Q Consensus 197 ~~v~l~~~~r~~~~~--~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~v~vCGp~~~~~ 273 (293)
++|-++|...+...- .+.+.|. .+...|+++.....-+... . .....+.+. . .....+++||......
T Consensus 155 ~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~----~-d~~~~l~~i---~-~~~~vii~~~~~~~~~ 225 (441)
T 1jdp_A 155 SRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKD----L-DLEDIVRNI---Q-ASERVVIMCASSDTIR 225 (441)
T ss_dssp CEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSC----C-CHHHHHHHH---H-HHCSEEEEESCHHHHH
T ss_pred cEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCcc----c-CHHHHHHHh---h-cCCcEEEEecCHHHHH
Confidence 678888875433222 1334443 3444577765443222111 1 123333331 1 2345789999998888
Q ss_pred HHHHHHHHcCCCcc
Q 022710 274 EVTSIVLAEGVSSE 287 (293)
Q Consensus 274 ~~~~~L~~~Gv~~~ 287 (293)
.+...+.+.|+...
T Consensus 226 ~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 226 SIMLVAHRHGMTSG 239 (441)
T ss_dssp HHHHHHHHTTCTTT
T ss_pred HHHHHHHHcCCCCC
Confidence 88888888888654
No 83
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=24.34 E-value=43 Score=29.47 Aligned_cols=24 Identities=13% Similarity=0.443 Sum_probs=20.2
Q ss_pred CCCeEEEEEeCcchhHHHHHHHHh
Q 022710 167 EYPTVLIFATGSGISPIRSLIESG 190 (293)
Q Consensus 167 ~~~~ivlia~GtGIaP~~sll~~~ 190 (293)
...++|.|+||+|.+-++.=++..
T Consensus 9 ~~~kIVvigGGtGl~~ll~gLk~~ 32 (341)
T 2p0y_A 9 QRPKIVVIGGGTGLPVVLNGLRKQ 32 (341)
T ss_dssp -CCEEEEECCGGGHHHHHHHHHHS
T ss_pred CCCeEEEECCcccHHHHHHHHHhC
Confidence 445899999999999999888875
No 84
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=23.47 E-value=1.9e+02 Score=20.09 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCeEEEEEEcCCCceeeEEecCCCCCCCCCCeEEEEEEE-eCCcchHhhhcCCCCCEE-EEEe
Q 022710 91 AGQYLQLRVVDVGKPTFLAIASPPSFASASGAFEFLVKS-VAGSTAEVLCGLKKGDVV-EISQ 151 (293)
Q Consensus 91 pGQ~v~l~~~~~~~~r~ySi~s~p~~~~~~~~~~~~Vk~-~~G~~s~~L~~l~~Gd~v-~v~g 151 (293)
.||.-.+.+.-..+.--+||.... .+. ++|++ .+|........+.+||++ +|.|
T Consensus 3 ~g~~k~V~l~K~~~~LG~tI~~~g-----~g~--~~I~rI~~gg~a~r~g~L~vGD~I~~VNG 58 (95)
T 3gge_A 3 KGIEKEVNVYKSEDSLGLTITDNG-----VGY--AFIKRIKDGGVIDSVKTICVGDHIESING 58 (95)
T ss_dssp CEEEEEEEEECCSSCCCEEEECSS-----SSC--CEEEEECTTSHHHHCTTCCTTCEEEEETT
T ss_pred CCeEEEEEEEECCCCceEEEEcCC-----CCc--EEEEEEcCCChHHhcCCCCCCCEEEEECC
Confidence 356556665533344457887532 232 23554 457777777789999987 5644
No 85
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=23.32 E-value=1.5e+02 Score=28.13 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=33.3
Q ss_pred ceeeeEeEeeeCCC----CeEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 56 WTPTPLAEISPAAE----SLFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 56 ~~~~~v~~~~~~~~----~~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
...++|+.++.++. +++++.|++++. ...|+||.++-|.-.+.
T Consensus 222 ~~~a~v~~n~~Lt~~~~~~~~hie~~~~~~----~~~Y~~GD~l~V~p~N~ 268 (618)
T 3qe2_A 222 PFLAAVTTNRKLNQGTERHLMHLELDISDS----KIRYESGDHVAVYPAND 268 (618)
T ss_dssp CEEEEEEEEEECSCCSSSCEEEEEEECTTS----CCCCCTTCEEEECCCCC
T ss_pred cEEEEEEeEEEcCCCCCCcEEEEEEEcCCC----CcccccCCEEEEEcCCC
Confidence 45788888887764 799999998653 25799999999986543
No 86
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=23.28 E-value=3.4e+02 Score=22.91 Aligned_cols=95 Identities=7% Similarity=0.015 Sum_probs=48.2
Q ss_pred HHHHHHHhhccCCCCcEEEEEccCCccccccHHHHH-HHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCCCc
Q 022710 183 IRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKFK-EWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQGT 261 (293)
Q Consensus 183 ~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~-~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~~~ 261 (293)
...+.+.+... ..+++-+++....... ...+.++ .++..|+++.....-+... ......+.+. ......
T Consensus 128 ~~~~~~~l~~~-g~~~vaii~~~~~~g~-~~~~~~~~~~~~~G~~v~~~~~~~~~~-----~d~~~~l~~i---~~~~~d 197 (375)
T 3i09_A 128 AKGTGSAVVKQ-GGKTWFFLTADYAFGK-ALEKNTADVVKANGGKVLGEVRHPLSA-----SDFSSFLLQA---QSSKAQ 197 (375)
T ss_dssp HHHHHHHHHHT-TCCEEEEEEESSHHHH-HHHHHHHHHHHHTTCEEEEEEEECTTC-----SCCHHHHHHH---HHTCCS
T ss_pred HHHHHHHHHHc-CCceEEEEecccHHHH-HHHHHHHHHHHHcCCEEeeeeeCCCCC-----ccHHHHHHHH---HhCCCC
Confidence 34455555443 3467888865322111 1222232 3344577764432222111 0122222221 112345
Q ss_pred EEEEeCChHHHHHHHHHHHHcCCCcc
Q 022710 262 GVVLCGQKQMAEEVTSIVLAEGVSSE 287 (293)
Q Consensus 262 ~v~vCGp~~~~~~~~~~L~~~Gv~~~ 287 (293)
.+++|+...+...+.+.+++.|+...
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~g~~~~ 223 (375)
T 3i09_A 198 ILGLANAGGDTVNAIKAAKEFGITKT 223 (375)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTGGGT
T ss_pred EEEEecCchhHHHHHHHHHHcCCCcC
Confidence 67888888788888888999998654
No 87
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.31 E-value=99 Score=26.44 Aligned_cols=42 Identities=10% Similarity=0.224 Sum_probs=27.9
Q ss_pred eeeeEeEeeeCCC---C--eEEEEEEcCCCccccccCCCCCeEEEEEEcCC
Q 022710 57 TPTPLAEISPAAE---S--LFHVSIDISDAPDIASSHTRAGQYLQLRVVDV 102 (293)
Q Consensus 57 ~~~~v~~~~~~~~---~--~~~l~l~~~~~~~~~~~~~~pGQ~v~l~~~~~ 102 (293)
..++|..+....+ + .+.+++.++++. ..+.||+++.+.+...
T Consensus 225 ~~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~----~~l~~G~~~~v~i~~~ 271 (341)
T 3fpp_A 225 YEGQIKDVLPTPEKVNDAIFYYARFEVPNPN----GLLRLDMTAQVHIQLT 271 (341)
T ss_dssp BCCCEEEECSSCCBSSSCBCCEEEEEEECSS----SCCCTTCEEEEEEESC
T ss_pred EEEEEEEEecCccccCceEEEEEEEEeCCCc----cccCCCCEEEEEEEEc
Confidence 3788888765543 2 346666665443 3479999999999743
No 88
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=22.28 E-value=3.4e+02 Score=22.60 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=48.8
Q ss_pred hHHHHHHHHhhccCCCCcEEEEEccCCccccccHHHH-HHHHhCCcEEEEEEecCCCCCCccccccchHHHhhhccCCCC
Q 022710 181 SPIRSLIESGFSSKERSDVRLYYGARNLKRMAYQDKF-KEWESSGVKIVPVLSQPDGNWSGETGYVQAAFSRAKKIFNPQ 259 (293)
Q Consensus 181 aP~~sll~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l-~~l~~~~i~~~~~~s~~~~~~~~~~g~v~~~~~~~~~~~~~~ 259 (293)
.-...+++.+.+. ..++|-+++... .......+.+ +.++..|+++.....-+... ......+.+.. ...
T Consensus 125 ~~~~~~~~~l~~~-g~~~ia~i~~~~-~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~-----~~~~~~~~~l~---~~~ 194 (358)
T 3hut_A 125 FEGPNNAAWMIGD-GFTSVAVIGVTT-DWGLSSAQAFRKAFELRGGAVVVNEEVPPGN-----RRFDDVIDEIE---DEA 194 (358)
T ss_dssp GHHHHHHHHHHHT-TCCEEEEEEESS-HHHHHHHHHHHHHHHHTTCEEEEEEEECTTC-----CCCHHHHHHHH---HHC
T ss_pred HHHHHHHHHHHHc-CCCEEEEEecCc-HHHHHHHHHHHHHHHHcCCEEEEEEecCCCC-----ccHHHHHHHHH---hcC
Confidence 3455566666544 446788887321 1111112222 23444577765432222111 01222222210 112
Q ss_pred CcEEEEeCChHHHHHHHHHHHHcCCCc
Q 022710 260 GTGVVLCGQKQMAEEVTSIVLAEGVSS 286 (293)
Q Consensus 260 ~~~v~vCGp~~~~~~~~~~L~~~Gv~~ 286 (293)
...+|+|+...+...+.+.+++.|+..
T Consensus 195 ~d~i~~~~~~~~a~~~~~~~~~~g~~~ 221 (358)
T 3hut_A 195 PQAIYLAMAYEDAAPFLRALRARGSAL 221 (358)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEccCchHHHHHHHHHHHcCCCC
Confidence 357888888888888899999999853
No 89
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=21.92 E-value=1.1e+02 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCCCcEEEEeCChHHHHHHHHHHHHcCCC
Q 022710 257 NPQGTGVVLCGQKQMAEEVTSIVLAEGVS 285 (293)
Q Consensus 257 ~~~~~~v~vCGp~~~~~~~~~~L~~~Gv~ 285 (293)
+.....++.|............|++.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~ 82 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGID 82 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCE
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCC
Confidence 44567888998877777888899999984
No 90
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=21.62 E-value=61 Score=20.00 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.+.+ .|+++++|++.|
T Consensus 18 ~~l~~~lt~~l~~~lg~~~~~v~V~i 43 (64)
T 3abf_A 18 RELVRRLTEMASRLLGEPYEEVRVIL 43 (64)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccEEEEE
Confidence 3577888888876 699999988754
No 91
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=20.42 E-value=54 Score=20.05 Aligned_cols=25 Identities=8% Similarity=0.121 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHH-cCCCccCeeccC
Q 022710 269 KQMAEEVTSIVLA-EGVSSEKILKNF 293 (293)
Q Consensus 269 ~~~~~~~~~~L~~-~Gv~~~~I~~~~ 293 (293)
..+.+.+.+.|.+ .|++.+++++.|
T Consensus 17 ~~l~~~i~~~l~~~lg~p~~~v~v~i 42 (62)
T 1otf_A 17 ETLIRQVSEAMANSLDAPLERVRVLI 42 (62)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred HHHHHHHHHHHHHHhCcCcccEEEEE
Confidence 3577888888876 599999988653
Done!