BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022712
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 133/270 (49%), Gaps = 13/270 (4%)
Query: 26 VKGLVDAGITKVPGIFICSSEELDR-DRQNSNEPTRTHFRIPVVDLKEVRFQ----RAEA 80
V+ L +GI +P +I EEL+ + E ++P +DLK + R
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 65
Query: 81 VSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVK-YG 139
+ + KA+ + G +INHG+ +++ + +A F L VE KE+Y + + K++ YG
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 140 SNFDLYESSSANWRDTLFCVMGPE-PLDPQELPFVCRD---ITLEYSRQVHKLGTLLFEL 195
S S W D F + PE D P D T EY++ + L T +F+
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 196 ISEALGLKPDYLLNMECAKGHCLLS---NYYPACPQPELTMGTTKHSDPDFLTILLQDHM 252
+S LGL+PD L LL NYYP CPQPEL +G H+D LT +L + +
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 245
Query: 253 GGLQVFHQNQWIDVPPLSGAFVVNIGDLLQ 282
GLQ+F++ +W+ + + V++IGD L+
Sbjct: 246 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLE 275
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 133/270 (49%), Gaps = 13/270 (4%)
Query: 26 VKGLVDAGITKVPGIFICSSEELDR-DRQNSNEPTRTHFRIPVVDLKEVRFQ----RAEA 80
V+ L +GI +P +I EEL+ + E ++P +DLK + R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 81 VSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVK-YG 139
+ + KA+ + G +INHG+ +++ + +A F L VE KE+Y + + K++ YG
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 140 SNFDLYESSSANWRDTLFCVMGPE-PLDPQELPFVCRD---ITLEYSRQVHKLGTLLFEL 195
S S W D F + PE D P D T EY++ + L T +F+
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 196 ISEALGLKPDYLLNMECAKGHCLLS---NYYPACPQPELTMGTTKHSDPDFLTILLQDHM 252
+S LGL+PD L LL NYYP CPQPEL +G H+D LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246
Query: 253 GGLQVFHQNQWIDVPPLSGAFVVNIGDLLQ 282
GLQ+F++ +W+ + + V++IGD L+
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLE 276
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 13/270 (4%)
Query: 26 VKGLVDAGITKVPGIFICSSEELDR-DRQNSNEPTRTHFRIPVVDLKEVRFQ----RAEA 80
V+ L +GI +P +I EEL+ + E ++P +DLK + R
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENC 66
Query: 81 VSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRKVK-YG 139
+ + KA+ + G +INHG+ ++ + +A F L VE KE+Y + + K++ YG
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 140 SNFDLYESSSANWRDTLFCVMGPE-PLDPQELPFVCRD---ITLEYSRQVHKLGTLLFEL 195
S S W D F + PE D P D T EY++ + L T +F+
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 196 ISEALGLKPDYLLNMECAKGHCLLS---NYYPACPQPELTMGTTKHSDPDFLTILLQDHM 252
+S LGL+PD L LL NYYP CPQPEL +G H+D LT +L + +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXV 246
Query: 253 GGLQVFHQNQWIDVPPLSGAFVVNIGDLLQ 282
GLQ+F++ +W+ + + V +IGD L+
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVXHIGDTLE 276
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 17/227 (7%)
Query: 65 IPVVDLKEVR-FQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEV 123
P++ L +V +RA + A E GFF+++NHG+ EV + + +G ++ +
Sbjct: 4 FPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYK---KC 60
Query: 124 KEEYYSREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFV---CRDITLE 180
E+ + V K G E + +W T F P + E+P + R++ +
Sbjct: 61 XEQRFKELVASKALEGVQ---AEVTDXDWESTFFLKHLPIS-NISEVPDLDEEYREVXRD 116
Query: 181 YSRQVHKLGTLLFELISEALGLKPDYLLN-MECAKGHCL---LSNYYPACPQPELTMGTT 236
+++++ KL L +L+ E LGL+ YL N +KG +SNY P CP+P+L G
Sbjct: 117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNY-PPCPKPDLIKGLR 175
Query: 237 KHSDPDFLTILLQD-HMGGLQVFHQNQWIDVPPLSGAFVVNIGDLLQ 282
H+D + +L QD + GLQ+ QWIDVPP + VVN+GD L+
Sbjct: 176 AHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLE 222
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 16/208 (7%)
Query: 89 EEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEYYSREVNRK---------VKYG 139
E GF + ++ + + +++A+ F LPVE K++Y + + K
Sbjct: 31 ERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGA 90
Query: 140 SNFDLYESSSANWRDT----LFCVMGPEPLDPQELPFVCRDITLEYSRQVHKLGTLLFEL 195
++DL E RD F + + P E+P D++ Y+ + G + E
Sbjct: 91 DHYDLKEFWHXG-RDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYN-SLDGXGGKVLEA 148
Query: 196 ISEALGLKPDYLLNMECAKGHCLLSNYYPACPQPELTMGTTKHSDPDFLTILLQDHMGGL 255
I+ L L+ D+ L +YP P+ + H D + +T+LL GGL
Sbjct: 149 IATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGL 208
Query: 256 QVFHQN-QWIDVPPLSGAFVVNIGDLLQ 282
+V ++ QW+ + P G V+NIGD L+
Sbjct: 209 EVLDRDGQWLPINPPPGCLVINIGDXLE 236
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 17/223 (7%)
Query: 70 LKEVRFQRAEAVSGVLKAAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEY-Y 128
L+ + ++ A++ +++ E GF + NH + E++ + + F E K E+ +
Sbjct: 4 LETIDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAF--FNSEAKNEFXF 61
Query: 129 SREVNRKVKYGSNFDLYESSSANWRDTLFCVMGPEPLDPQELPFVCRDITLEYSRQVHKL 188
+RE + S + E++ + + P +P R L Y + + L
Sbjct: 62 NRETHDGFFPAS---ISETAKGHTVKDIKEYYHVYPWG--RIPDSLRANILAYYEKANTL 116
Query: 189 GTLLFELIS----EALGLKPDYLLNMECAKGHCLLS---NYYPACPQPEL-TMGTTKHSD 240
+ L E I + + K L A H L +Y P E + H D
Sbjct: 117 ASELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHED 176
Query: 241 PDFLTILLQDHMGGLQVFHQN-QWIDVPPLSGAFVVNIGDLLQ 282
+ +T+L + GLQV ++ W+DVP G ++NIGD LQ
Sbjct: 177 INLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQ 219
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 60/239 (25%)
Query: 87 AAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEY------YSREVNRKVKYGS 140
A+ + GFF +NHG+ + L + + FH + + +E++ Y++E +V+ G
Sbjct: 35 ASRDTGFFYAVNHGINVQRLS---QKTKEFH-MSITPEEKWDLAIRAYNKEHQDQVRAG- 89
Query: 141 NFDLYESSSANWRDTLFCVMGPE--------------------PLDPQELPFVCRDITLE 180
Y S FC + P P + + F +D +
Sbjct: 90 ---YYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGF--QDFAEQ 144
Query: 181 YSRQVHKLGTLLFELISEALG---------LKPDYLLNMECAKGHCLLSNYYPACPQPEL 231
Y V L + L + + ALG KPD L +L Y P PE
Sbjct: 145 YYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL------ASVVLIRYPYLDPYPEA 198
Query: 232 TMGTTK---------HSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLL 281
+ T H D +T+L Q ++ LQV + D+ +++N G +
Sbjct: 199 AIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYM 257
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 87/233 (37%), Gaps = 48/233 (20%)
Query: 87 AAEEVGFFQVINHGVATEVLVGMLEAARGFHELPVEVKEEY------YSREVNRKVKYGS 140
A+ + GFF +NHG+ + L + + FH + + +E++ Y++E +V+ G
Sbjct: 35 ASRDTGFFYAVNHGINVQRLS---QKTKEFH-MSITPEEKWDLAIRAYNKEHQDQVRAG- 89
Query: 141 NFDLYESSSANWRDTLFCVMGPE--------------------PLDPQELPFVCRDITLE 180
Y S FC + P P + + F +D +
Sbjct: 90 ---YYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGF--QDFAEQ 144
Query: 181 YSRQVHKLGTLLFELISEALGLKPDYL---LNMECAKGHCLLSNYYPACPQPELTMGTTK 237
Y V L + L + + ALG + ++ + +L Y P PE + T
Sbjct: 145 YYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAA 204
Query: 238 ---------HSDPDFLTILLQDHMGGLQVFHQNQWIDVPPLSGAFVVNIGDLL 281
H D +T+L Q ++ LQV + D+ +++N G +
Sbjct: 205 DGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYM 257
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 210 MECAKGHCLLSNYYPA--CPQPELTMGTTKHSDP 241
+ C+ CLL+N YPA CP P + G+ KH P
Sbjct: 48 IPCSSPTCLLANAYPAPGCPAP--SCGSDKHDKP 79
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 210 MECAKGHCLLSNYYPA--CPQPELTMGTTKHSDP 241
+ C+ CLL+N YPA CP P + G+ KH P
Sbjct: 48 IPCSSPTCLLANAYPAPGCPAP--SCGSDKHDKP 79
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 210 MECAKGHCLLSNYYPA--CPQPELTMGTTKHSDP 241
+ C+ CLL+N YPA CP P + G+ +H P
Sbjct: 50 IACSSPTCLLANAYPAPGCPAP--SCGSDRHDKP 81
>pdb|3GYT|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
Strongyloides Stercoralis In Complex With Its
Physiological Ligand Dafachronic Acid Delta 4
Length = 244
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 41 FICSSEELDRDRQNSNEPTRTHFRIPVVDLKEVRFQRAEAVS---GVLKAAEEVGFFQVI 97
F C +E LD D+Q S + H ++++ ++ +R ++ G E G F ++
Sbjct: 20 FQCMNEPLDNDQQASTLAKKEHNPTDILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLL 79
Query: 98 NHGVATEVL----VGMLEAARGFHELPVE 122
G+ E+L V + A +G + PV+
Sbjct: 80 KGGM-IEMLTIRGVTVFNADKGVWQTPVD 107
>pdb|3DJD|A Chain A, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii)
pdb|3DJD|B Chain B, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii)
pdb|3DJE|A Chain A, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii) In
Complex With Fsa
pdb|3DJE|B Chain B, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii) In
Complex With Fsa
Length = 438
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 94 FQVINHGVATEVLVGMLEAARGFHELP------VEVKEEYYSREVNRKVKYGSNFDLYES 147
F + H +++G + RGF LP V+ E ++++ +K+ + +
Sbjct: 345 FLIDRHPQYHSLVLGCGASGRGFKYLPSIGNLIVDAXEGKVPQKIHELIKWNPDI----A 400
Query: 148 SSANWRDTLFCVMGP 162
++ NWRDTL GP
Sbjct: 401 ANRNWRDTLGRFGGP 415
>pdb|3GYU|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
Strongyloides Stercoralis In Complex With Its
Physiological Ligand Dafachronic Acid Delta 7
Length = 244
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 41 FICSSEELDRDRQNSNEPTRTHFRIPVVDLKEVRFQRAEAVS---GVLKAAEEVGFFQVI 97
F C +E LD D+Q S + H ++++ ++ +R + G E G F ++
Sbjct: 20 FQCXNEPLDNDQQASTLAKKEHNPTDILNVXDITXRRLVKXAKRLGAFNEISEAGKFSLL 79
Query: 98 NHGVATEVL---VGMLEAARGFHELPVE 122
G + V + A +G + PV+
Sbjct: 80 KGGXIEXLTIRGVTVFNADKGVWQTPVD 107
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 167 PQELPFVCRDITLEYSRQVHKLGTLLFELISEA--LGLKP 204
P+ LPFV ++IT + RQ L + L E+IS A +GLKP
Sbjct: 912 PEYLPFVLQEITSQPKRQYLLLHS-LKEIISSASVVGLKP 950
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 167 PQELPFVCRDITLEYSRQVHKLGTLLFELISEA--LGLKP 204
P+ LPFV ++IT + RQ L + L E+IS A +GLKP
Sbjct: 889 PEYLPFVLQEITSQPKRQYLLLHS-LKEIISSASVVGLKP 927
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,786,623
Number of Sequences: 62578
Number of extensions: 359422
Number of successful extensions: 1048
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1023
Number of HSP's gapped (non-prelim): 17
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)