Query 022713
Match_columns 293
No_of_seqs 365 out of 1720
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 8.1E-20 2.8E-24 139.3 4.8 64 143-206 14-77 (80)
2 2vi6_A Homeobox protein nanog; 99.8 4.6E-20 1.6E-24 133.9 2.9 62 144-205 1-62 (62)
3 1nk2_P Homeobox protein VND; h 99.8 1.1E-19 3.6E-24 137.6 4.9 67 143-209 6-72 (77)
4 2da3_A Alpha-fetoprotein enhan 99.8 8.4E-20 2.9E-24 138.6 4.2 64 143-206 14-77 (80)
5 2h1k_A IPF-1, pancreatic and d 99.8 1E-19 3.6E-24 132.5 4.1 61 145-205 2-62 (63)
6 2kt0_A Nanog, homeobox protein 99.8 7.1E-20 2.4E-24 140.5 3.1 65 142-206 18-82 (84)
7 2cue_A Paired box protein PAX6 99.8 2.2E-19 7.6E-24 136.8 5.6 63 144-206 5-67 (80)
8 2dmu_A Homeobox protein goosec 99.8 1.9E-19 6.4E-24 133.7 4.9 63 144-206 5-67 (70)
9 2cra_A Homeobox protein HOX-B1 99.8 1.1E-19 3.9E-24 135.0 3.5 63 144-206 5-67 (70)
10 2dmq_A LIM/homeobox protein LH 99.8 2.3E-19 7.9E-24 136.4 4.9 63 144-206 5-67 (80)
11 2da2_A Alpha-fetoprotein enhan 99.8 1.8E-19 6E-24 133.8 3.8 64 143-206 4-67 (70)
12 2dms_A Homeobox protein OTX2; 99.8 2E-19 6.7E-24 137.0 4.1 63 144-206 5-67 (80)
13 1puf_A HOX-1.7, homeobox prote 99.8 4.9E-19 1.7E-23 134.0 6.2 64 143-206 10-73 (77)
14 1fjl_A Paired protein; DNA-bin 99.8 3.4E-19 1.2E-23 136.0 5.1 64 143-206 15-78 (81)
15 3a01_A Homeodomain-containing 99.8 3.9E-19 1.3E-23 139.4 5.0 66 143-208 14-79 (93)
16 1wh5_A ZF-HD homeobox family p 99.8 2E-19 7E-24 137.5 3.3 61 143-203 14-78 (80)
17 2e1o_A Homeobox protein PRH; D 99.8 4.6E-19 1.6E-23 131.7 4.9 62 144-205 5-66 (70)
18 2da1_A Alpha-fetoprotein enhan 99.8 2.4E-19 8.2E-24 133.0 3.2 63 144-206 5-67 (70)
19 2djn_A Homeobox protein DLX-5; 99.8 2.2E-19 7.6E-24 133.4 2.9 63 143-205 4-66 (70)
20 2hdd_A Protein (engrailed home 99.8 3.6E-19 1.2E-23 128.8 3.8 58 146-203 3-60 (61)
21 1yz8_P Pituitary homeobox 2; D 99.7 1.7E-19 5.8E-24 133.3 2.0 64 144-207 1-64 (68)
22 1ig7_A Homeotic protein MSX-1; 99.7 6.2E-19 2.1E-23 126.1 4.2 57 147-203 1-57 (58)
23 2m0c_A Homeobox protein arista 99.7 6.1E-19 2.1E-23 132.1 4.3 65 142-206 5-69 (75)
24 1zq3_P PRD-4, homeotic bicoid 99.7 7.6E-19 2.6E-23 129.9 4.6 62 146-207 2-63 (68)
25 2r5y_A Homeotic protein sex co 99.7 4.4E-19 1.5E-23 137.5 3.4 63 143-205 25-87 (88)
26 1b8i_A Ultrabithorax, protein 99.7 5.8E-19 2E-23 135.0 3.9 62 144-205 18-79 (81)
27 1ahd_P Antennapedia protein mu 99.7 4.7E-19 1.6E-23 131.1 3.2 61 146-206 2-62 (68)
28 2l7z_A Homeobox protein HOX-A1 99.7 9.1E-19 3.1E-23 131.3 4.6 63 144-206 5-67 (73)
29 1bw5_A ISL-1HD, insulin gene e 99.7 4.7E-19 1.6E-23 130.1 2.9 61 145-205 2-62 (66)
30 2da4_A Hypothetical protein DK 99.7 4.7E-19 1.6E-23 134.9 2.8 62 144-205 6-71 (80)
31 1jgg_A Segmentation protein EV 99.7 8.5E-19 2.9E-23 126.4 4.0 58 147-204 2-59 (60)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 1E-18 3.4E-23 129.3 4.3 61 146-206 2-62 (68)
33 2k40_A Homeobox expressed in E 99.7 7.1E-19 2.4E-23 129.5 3.2 63 146-208 1-63 (67)
34 1wh7_A ZF-HD homeobox family p 99.7 6.4E-19 2.2E-23 134.9 2.6 60 143-203 14-78 (80)
35 1uhs_A HOP, homeodomain only p 99.7 1.7E-18 5.8E-23 129.3 4.6 59 147-205 2-61 (72)
36 2ecc_A Homeobox and leucine zi 99.7 1.5E-18 5E-23 131.7 4.1 59 148-206 5-63 (76)
37 3rkq_A Homeobox protein NKX-2. 99.7 1.8E-18 6E-23 123.2 3.9 57 146-202 2-58 (58)
38 2hi3_A Homeodomain-only protei 99.7 2.3E-18 7.9E-23 129.0 4.8 60 147-206 3-63 (73)
39 1b72_A Protein (homeobox prote 99.7 1.6E-18 5.4E-23 136.7 4.1 64 144-207 32-95 (97)
40 1akh_A Protein (mating-type pr 99.7 1.2E-18 4E-23 125.8 2.8 59 144-202 3-61 (61)
41 3a02_A Homeobox protein arista 99.7 1.4E-18 4.9E-23 125.2 3.1 57 149-205 2-58 (60)
42 3nar_A ZHX1, zinc fingers and 99.7 1.5E-18 5.3E-23 136.6 3.6 63 144-206 23-85 (96)
43 2da5_A Zinc fingers and homeob 99.7 2.2E-18 7.6E-23 129.9 4.2 60 147-206 8-67 (75)
44 1x2n_A Homeobox protein pknox1 99.7 4E-18 1.4E-22 127.5 4.9 64 143-206 4-70 (73)
45 3a03_A T-cell leukemia homeobo 99.7 3E-18 1E-22 122.1 3.7 54 151-204 2-55 (56)
46 1puf_B PRE-B-cell leukemia tra 99.7 5.7E-18 2E-22 126.6 4.5 63 147-209 2-67 (73)
47 2cuf_A FLJ21616 protein; homeo 99.7 5.8E-18 2E-22 133.0 4.7 64 143-206 4-82 (95)
48 2ly9_A Zinc fingers and homeob 99.7 4.7E-18 1.6E-22 127.3 3.8 61 146-206 6-66 (74)
49 2dn0_A Zinc fingers and homeob 99.7 3.2E-18 1.1E-22 129.2 2.8 60 147-206 9-68 (76)
50 1b72_B Protein (PBX1); homeodo 99.7 1.2E-17 4.1E-22 128.8 4.9 61 147-207 2-65 (87)
51 2ecb_A Zinc fingers and homeob 99.7 6.3E-18 2.2E-22 131.9 2.9 56 151-206 16-71 (89)
52 1du6_A PBX1, homeobox protein 99.7 5.4E-18 1.8E-22 123.6 1.9 58 146-203 3-63 (64)
53 1au7_A Protein PIT-1, GHF-1; c 99.7 7.5E-18 2.5E-22 142.4 2.7 62 143-204 84-145 (146)
54 2xsd_C POU domain, class 3, tr 99.7 7E-18 2.4E-22 145.2 2.6 64 143-206 96-159 (164)
55 1k61_A Mating-type protein alp 99.7 1.8E-17 6.1E-22 119.3 3.9 55 149-203 1-58 (60)
56 2dmp_A Zinc fingers and homeob 99.7 3E-17 1E-21 127.8 5.1 58 149-206 16-73 (89)
57 2cqx_A LAG1 longevity assuranc 99.7 6.2E-18 2.1E-22 126.8 1.1 59 146-204 8-67 (72)
58 2dmn_A Homeobox protein TGIF2L 99.7 2.7E-17 9.3E-22 126.4 4.6 62 144-205 5-69 (83)
59 1mnm_C Protein (MAT alpha-2 tr 99.7 2.6E-17 8.9E-22 127.2 4.1 60 143-202 24-86 (87)
60 1le8_B Mating-type protein alp 99.7 2E-17 6.7E-22 127.0 3.0 60 147-206 3-65 (83)
61 1e3o_C Octamer-binding transcr 99.7 1.9E-17 6.4E-22 141.8 3.2 61 144-204 99-159 (160)
62 2da6_A Hepatocyte nuclear fact 99.7 6.6E-17 2.2E-21 129.0 5.5 63 144-206 4-87 (102)
63 2l9r_A Homeobox protein NKX-3. 99.6 1.8E-17 6.3E-22 123.5 1.4 58 151-208 9-66 (69)
64 3d1n_I POU domain, class 6, tr 99.6 6.8E-17 2.3E-21 136.9 4.5 61 143-203 90-150 (151)
65 3nau_A Zinc fingers and homeob 99.6 7.2E-17 2.5E-21 119.0 3.3 53 153-205 11-63 (66)
66 2e19_A Transcription factor 8; 99.6 7.1E-17 2.4E-21 118.4 2.8 55 150-204 7-61 (64)
67 1lfb_A Liver transcription fac 99.6 4.5E-17 1.5E-21 129.5 1.7 64 143-206 6-90 (99)
68 3l1p_A POU domain, class 5, tr 99.6 7.5E-17 2.6E-21 137.5 3.2 60 144-203 94-153 (155)
69 1wi3_A DNA-binding protein SAT 99.6 1.1E-16 3.9E-21 118.4 3.7 59 144-202 5-64 (71)
70 1x2m_A LAG1 longevity assuranc 99.6 6.7E-17 2.3E-21 118.8 1.5 49 155-203 9-58 (64)
71 2d5v_A Hepatocyte nuclear fact 99.6 2.7E-16 9.4E-21 134.6 2.4 64 143-206 94-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 5.2E-16 1.8E-20 114.6 2.9 59 152-210 4-65 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 1.3E-14 4.4E-19 128.1 -0.1 61 143-203 112-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.4 2.2E-13 7.4E-18 106.1 3.5 54 151-204 10-66 (89)
75 2da7_A Zinc finger homeobox pr 99.4 1.9E-13 6.5E-18 101.6 2.6 46 155-200 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.3 7.5E-13 2.6E-17 118.6 2.8 59 143-201 139-218 (221)
77 1mh3_A Maltose binding-A1 home 99.3 4.6E-13 1.6E-17 126.8 -0.1 56 147-202 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.9 6.3E-11 2.2E-15 77.7 -2.6 24 188-211 1-24 (37)
79 2ys9_A Homeobox and leucine zi 94.1 0.013 4.4E-07 43.2 0.8 40 157-196 17-56 (70)
80 1hjb_A Ccaat/enhancer binding 88.9 0.41 1.4E-05 36.6 4.1 40 198-237 29-72 (87)
81 2jn6_A Protein CGL2762, transp 81.6 0.21 7.1E-06 37.6 -0.8 42 150-195 3-45 (97)
82 1gu4_A CAAT/enhancer binding p 73.3 7.3 0.00025 29.0 5.6 34 198-234 29-62 (78)
83 1hlv_A CENP-B, major centromer 67.3 4.1 0.00014 31.7 3.3 50 148-200 3-52 (131)
84 2glo_A Brinker CG9653-PA; prot 64.8 2.1 7.1E-05 29.2 1.0 45 150-195 3-47 (59)
85 2elh_A CG11849-PA, LD40883P; s 60.7 6.9 0.00024 28.7 3.3 43 147-194 17-59 (87)
86 1gu4_A CAAT/enhancer binding p 58.3 24 0.00081 26.1 5.9 41 198-238 33-73 (78)
87 1ci6_A Transcription factor AT 56.9 28 0.00096 24.4 5.9 28 209-236 31-58 (63)
88 2yy0_A C-MYC-binding protein; 56.8 17 0.00059 24.9 4.5 30 207-236 18-47 (53)
89 1hjb_A Ccaat/enhancer binding 55.9 28 0.00096 26.3 6.0 55 202-256 30-85 (87)
90 3hug_A RNA polymerase sigma fa 54.5 5.9 0.0002 29.1 2.0 46 152-202 37-82 (92)
91 1t2k_D Cyclic-AMP-dependent tr 54.0 37 0.0013 23.4 6.0 28 208-235 29-56 (61)
92 1p4w_A RCSB; solution structur 52.9 12 0.00042 28.4 3.7 47 150-202 32-78 (99)
93 1tc3_C Protein (TC3 transposas 51.5 7.1 0.00024 24.1 1.8 40 152-196 5-44 (51)
94 3c57_A Two component transcrip 49.9 6.8 0.00023 29.2 1.7 46 152-203 27-72 (95)
95 1jko_C HIN recombinase, DNA-in 49.7 3.2 0.00011 26.3 -0.2 42 152-198 5-46 (52)
96 2wt7_A Proto-oncogene protein 49.7 43 0.0015 23.3 5.9 24 211-234 26-49 (63)
97 2lv7_A Calcium-binding protein 49.2 18 0.00063 27.0 4.1 46 149-194 26-78 (100)
98 2x7l_M HIV REV; nuclear export 48.4 12 0.00042 29.7 3.0 36 158-207 15-50 (115)
99 1fse_A GERE; helix-turn-helix 47.1 10 0.00036 26.0 2.2 46 151-202 10-55 (74)
100 2oxj_A Hybrid alpha/beta pepti 46.9 37 0.0013 21.2 4.4 25 213-237 6-30 (34)
101 1s7o_A Hypothetical UPF0122 pr 45.5 27 0.00093 27.0 4.7 47 152-203 22-68 (113)
102 1je8_A Nitrate/nitrite respons 45.5 12 0.00042 26.9 2.5 46 151-202 20-65 (82)
103 1uii_A Geminin; human, DNA rep 45.4 51 0.0018 24.7 5.9 34 205-238 43-76 (83)
104 2o8x_A Probable RNA polymerase 44.4 9.7 0.00033 25.8 1.7 46 152-202 15-60 (70)
105 3m48_A General control protein 44.4 37 0.0013 21.1 4.1 25 213-237 5-29 (33)
106 1x3u_A Transcriptional regulat 43.6 7.7 0.00026 27.2 1.1 45 152-202 16-60 (79)
107 3i5g_B Myosin regulatory light 42.7 42 0.0014 26.5 5.6 42 148-189 5-51 (153)
108 1xsv_A Hypothetical UPF0122 pr 41.3 32 0.0011 26.5 4.4 47 152-203 25-71 (113)
109 2dgc_A Protein (GCN4); basic d 39.6 68 0.0023 22.4 5.6 30 208-237 30-59 (63)
110 1iuf_A Centromere ABP1 protein 38.8 33 0.0011 27.3 4.4 52 147-198 6-61 (144)
111 3lph_A Protein REV; helix-loop 38.5 17 0.00057 26.6 2.2 36 158-207 18-53 (72)
112 2rnj_A Response regulator prot 37.9 17 0.00058 26.5 2.3 47 151-203 28-74 (91)
113 2p7v_B Sigma-70, RNA polymeras 36.8 10 0.00036 26.0 0.9 50 152-202 5-54 (68)
114 1jnm_A Proto-oncogene C-JUN; B 36.1 44 0.0015 23.1 4.1 27 210-236 24-50 (62)
115 1dh3_A Transcription factor CR 35.1 91 0.0031 21.2 5.5 28 209-236 23-50 (55)
116 1ci6_A Transcription factor AT 35.0 93 0.0032 21.6 5.7 31 206-236 21-51 (63)
117 3iv1_A Tumor susceptibility ge 34.7 90 0.0031 23.1 5.7 39 196-234 13-51 (78)
118 1ku3_A Sigma factor SIGA; heli 34.7 19 0.00064 25.0 1.9 48 152-202 10-59 (73)
119 1dip_A Delta-sleep-inducing pe 33.1 1.4E+02 0.0049 21.8 6.6 32 207-238 14-45 (78)
120 2wt7_A Proto-oncogene protein 32.9 1.1E+02 0.0036 21.2 5.7 34 204-237 26-59 (63)
121 2dgc_A Protein (GCN4); basic d 32.8 53 0.0018 23.0 4.1 28 205-232 34-61 (63)
122 1t6f_A Geminin; coiled-coil, c 32.7 80 0.0027 20.0 4.3 29 208-236 7-35 (37)
123 3mzy_A RNA polymerase sigma-H 32.2 20 0.00069 27.7 2.0 44 152-201 109-152 (164)
124 3c3g_A Alpha/beta peptide with 31.5 92 0.0031 19.3 4.4 25 213-237 5-29 (33)
125 1t2k_D Cyclic-AMP-dependent tr 31.5 1.2E+02 0.004 20.8 5.7 30 207-236 21-50 (61)
126 2wt7_B Transcription factor MA 30.9 50 0.0017 25.1 3.9 31 206-236 53-83 (90)
127 1tty_A Sigma-A, RNA polymerase 28.9 31 0.0011 24.9 2.3 48 152-202 18-67 (87)
128 2rgt_A Fusion of LIM/homeobox 28.7 1.2 4E-05 37.1 -6.3 30 144-173 134-163 (169)
129 1gd2_E Transcription factor PA 28.4 92 0.0031 22.4 4.7 31 205-235 33-63 (70)
130 1l8d_A DNA double-strand break 28.4 1.2E+02 0.004 22.9 5.8 10 252-261 47-56 (112)
131 3c3f_A Alpha/beta peptide with 28.1 1.1E+02 0.0038 19.0 4.4 25 213-237 6-30 (34)
132 1jnm_A Proto-oncogene C-JUN; B 27.7 1.5E+02 0.005 20.3 5.7 33 204-236 25-57 (62)
133 1fi6_A EH domain protein REPS1 27.3 23 0.00078 25.6 1.4 43 152-194 2-49 (92)
134 3ulq_B Transcriptional regulat 27.3 34 0.0012 25.2 2.4 45 149-199 26-70 (90)
135 2rn7_A IS629 ORFA; helix, all 25.6 32 0.0011 25.6 2.0 46 150-195 4-52 (108)
136 1wlq_A Geminin; coiled-coil; 2 25.4 1.4E+02 0.0047 22.3 5.3 33 206-238 36-68 (83)
137 1uo4_A General control protein 25.0 1.3E+02 0.0044 18.8 4.2 25 213-237 6-30 (34)
138 2pmy_A RAS and EF-hand domain- 24.1 17 0.00059 25.9 0.2 44 151-194 19-67 (91)
139 1rp3_A RNA polymerase sigma fa 23.9 34 0.0012 28.3 2.0 46 152-202 187-232 (239)
140 1c07_A Protein (epidermal grow 23.8 23 0.0008 25.8 0.8 43 152-194 3-50 (95)
141 2wvr_A Geminin; DNA replicatio 23.8 1.4E+02 0.0048 25.9 5.9 32 206-237 113-144 (209)
142 3he5_B Synzip2; heterodimeric 23.7 1.6E+02 0.0055 19.3 5.0 27 205-231 21-47 (52)
143 1or7_A Sigma-24, RNA polymeras 23.4 36 0.0012 27.4 2.0 46 152-202 140-185 (194)
144 2kvr_A Ubiquitin carboxyl-term 23.0 35 0.0012 27.3 1.8 23 176-198 72-94 (130)
145 3s9g_A Protein hexim1; cyclin 21.1 1.7E+02 0.0058 22.6 5.2 24 208-231 65-88 (104)
146 2lhi_A Calmodulin, serine/thre 21.0 86 0.0029 25.2 3.9 38 151-188 3-45 (176)
147 1etf_B REV peptide; complex (R 21.0 47 0.0016 19.6 1.6 12 195-206 7-18 (26)
148 3v86_A De novo design helix; c 20.8 1.3E+02 0.0046 17.3 3.6 23 212-234 4-26 (27)
149 2q0o_A Probable transcriptiona 20.4 54 0.0019 27.8 2.6 47 150-202 173-219 (236)
150 3fmy_A HTH-type transcriptiona 20.4 58 0.002 22.4 2.3 41 151-198 9-49 (73)
151 1r8e_A Multidrug-efflux transp 20.3 90 0.0031 26.9 4.1 34 151-197 43-76 (278)
152 3gp4_A Transcriptional regulat 20.1 2.5E+02 0.0087 22.2 6.5 15 150-164 38-52 (142)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=8.1e-20 Score=139.26 Aligned_cols=64 Identities=30% Similarity=0.402 Sum_probs=59.6
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
..+.+|.|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 4557788999999999999999999999999999999999999999999999999999998643
No 2
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=4.6e-20 Score=133.92 Aligned_cols=62 Identities=32% Similarity=0.512 Sum_probs=53.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
|+++|.|+.|+..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|++|
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 35678899999999999999999999999999999999999999999999999999999864
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=1.1e-19 Score=137.63 Aligned_cols=67 Identities=34% Similarity=0.563 Sum_probs=61.3
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVD 209 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~~~ 209 (293)
..+++|.|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+....
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 3456788999999999999999999999999999999999999999999999999999998765443
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=8.4e-20 Score=138.59 Aligned_cols=64 Identities=30% Similarity=0.445 Sum_probs=59.9
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
..+.+|.|++|+.+|+.+||.+|..++||+..++++||.+|||+++||+|||||||+|+|+++.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 3557888999999999999999999999999999999999999999999999999999998653
No 5
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=1e-19 Score=132.55 Aligned_cols=61 Identities=33% Similarity=0.508 Sum_probs=56.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 145 VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 145 ~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
+.+|.|++|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678999999999999999999999999999999999999999999999999999999753
No 6
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=7.1e-20 Score=140.46 Aligned_cols=65 Identities=29% Similarity=0.443 Sum_probs=60.6
Q ss_pred ccCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 142 EDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 142 ~~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
...+.+|.|+.|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|++++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 34567888999999999999999999999999999999999999999999999999999998654
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.2e-19 Score=136.82 Aligned_cols=63 Identities=27% Similarity=0.498 Sum_probs=59.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
+..+|.|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 457888999999999999999999999999999999999999999999999999999998654
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-19 Score=133.71 Aligned_cols=63 Identities=33% Similarity=0.533 Sum_probs=59.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
+..+|.|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 457888999999999999999999999999999999999999999999999999999998653
No 9
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.1e-19 Score=134.98 Aligned_cols=63 Identities=24% Similarity=0.481 Sum_probs=59.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
++.+|+|++|+..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+.+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 457888999999999999999999999999999999999999999999999999999998653
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-19 Score=136.40 Aligned_cols=63 Identities=24% Similarity=0.385 Sum_probs=59.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.+.+|.|++|+.+|+.+||.+|..++||+..++.+||.+|||+++||+|||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 456888999999999999999999999999999999999999999999999999999998654
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-19 Score=133.75 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=59.9
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.++.+|.|++|+.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|++..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 3567888999999999999999999999999999999999999999999999999999998653
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=2e-19 Score=137.02 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=59.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.+.+|.|++|+.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 457888999999999999999999999999999999999999999999999999999998664
No 13
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.76 E-value=4.9e-19 Score=133.95 Aligned_cols=64 Identities=36% Similarity=0.510 Sum_probs=59.8
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
..+.+|+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+...
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 3456788999999999999999999999999999999999999999999999999999998654
No 14
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.76 E-value=3.4e-19 Score=135.99 Aligned_cols=64 Identities=30% Similarity=0.491 Sum_probs=59.1
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
..+++|.|++|+..|+.+||.+|..++||+..+|.+||.+|||+++||++||||||+|+|+++.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4557888999999999999999999999999999999999999999999999999999998654
No 15
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=3.9e-19 Score=139.44 Aligned_cols=66 Identities=32% Similarity=0.491 Sum_probs=61.1
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEV 208 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~~ 208 (293)
..+.+|+|++|+..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|++..+.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 345778899999999999999999999999999999999999999999999999999999876544
No 16
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=2e-19 Score=137.55 Aligned_cols=61 Identities=15% Similarity=0.295 Sum_probs=57.6
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQ----HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~----~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
..++||+|+.|+.+|+..||..|.. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3567888999999999999999999 999999999999999999999999999999999875
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=4.6e-19 Score=131.69 Aligned_cols=62 Identities=34% Similarity=0.608 Sum_probs=58.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
+..+|+|++|+.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34677899999999999999999999999999999999999999999999999999999864
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-19 Score=133.01 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=59.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.+.+|.|++|+.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 456888999999999999999999999999999999999999999999999999999998653
No 19
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.2e-19 Score=133.40 Aligned_cols=63 Identities=27% Similarity=0.432 Sum_probs=59.1
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
.++.+|.|++|+..|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 345788899999999999999999999999999999999999999999999999999999754
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=3.6e-19 Score=128.78 Aligned_cols=58 Identities=31% Similarity=0.604 Sum_probs=53.2
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
.+|.|+.|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999986
No 21
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.75 E-value=1.7e-19 Score=133.34 Aligned_cols=64 Identities=28% Similarity=0.481 Sum_probs=60.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 207 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 207 (293)
|+++|.|+.|+..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+++..
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 4578899999999999999999999999999999999999999999999999999999987653
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=6.2e-19 Score=126.09 Aligned_cols=57 Identities=33% Similarity=0.560 Sum_probs=55.2
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
+|+|+.|+..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999986
No 23
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=6.1e-19 Score=132.14 Aligned_cols=65 Identities=29% Similarity=0.471 Sum_probs=60.5
Q ss_pred ccCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 142 EDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 142 ~~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
..++++|.|++|+..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++.
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 34567888999999999999999999999999999999999999999999999999999998654
No 24
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=7.6e-19 Score=129.89 Aligned_cols=62 Identities=34% Similarity=0.527 Sum_probs=58.5
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhh
Q 022713 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 207 (293)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 207 (293)
.+|.|+.|+..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 57889999999999999999999999999999999999999999999999999999986543
No 25
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=4.4e-19 Score=137.48 Aligned_cols=63 Identities=32% Similarity=0.564 Sum_probs=55.4
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
.++.+|.|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 345788999999999999999999999999999999999999999999999999999999864
No 26
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.74 E-value=5.8e-19 Score=134.98 Aligned_cols=62 Identities=32% Similarity=0.573 Sum_probs=54.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
+..+|.|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45678899999999999999999999999999999999999999999999999999999864
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.74 E-value=4.7e-19 Score=131.11 Aligned_cols=61 Identities=31% Similarity=0.526 Sum_probs=58.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
++|.|++|+..|+..||..|..++||+..++.+||..+||+++||+|||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4788999999999999999999999999999999999999999999999999999998654
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.74 E-value=9.1e-19 Score=131.28 Aligned_cols=63 Identities=29% Similarity=0.452 Sum_probs=59.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.+.+|+|++|+..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 356888999999999999999999999999999999999999999999999999999998643
No 29
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=4.7e-19 Score=130.10 Aligned_cols=61 Identities=26% Similarity=0.469 Sum_probs=58.0
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 145 VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 145 ~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
+.+|.|+.|+.+|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 3678899999999999999999999999999999999999999999999999999999764
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.7e-19 Score=134.90 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=58.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQH----STLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~----~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
++.+|.|+.|+.+|+.+||.+|..+ +||+..+|++||.+|||+++||+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4578889999999999999999999 9999999999999999999999999999999999754
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=8.5e-19 Score=126.41 Aligned_cols=58 Identities=34% Similarity=0.560 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhh
Q 022713 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLK 204 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krk 204 (293)
+|.|+.|+..|+..||..|..++||+..++.+||.++||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999974
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.74 E-value=1e-18 Score=129.25 Aligned_cols=61 Identities=31% Similarity=0.575 Sum_probs=58.1
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
++|.|++|+..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999998654
No 33
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.73 E-value=7.1e-19 Score=129.51 Aligned_cols=63 Identities=32% Similarity=0.513 Sum_probs=58.9
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhhh
Q 022713 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEV 208 (293)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~~ 208 (293)
.+|.|++|+..|+.+||..|..++||+..++..||.++||+++||++||||||+|+|++..+.
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~ 63 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRES 63 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhc
Confidence 368899999999999999999999999999999999999999999999999999999876543
No 34
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.73 E-value=6.4e-19 Score=134.92 Aligned_cols=60 Identities=15% Similarity=0.333 Sum_probs=56.3
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
..+++|.|+.||.+|+..|| .|.. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 35578889999999999999 7999 999999999999999999999999999999999875
No 35
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.7e-18 Score=129.27 Aligned_cols=59 Identities=22% Similarity=0.395 Sum_probs=56.1
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 147 ARKKLRLTKEQSALLEESFKQ-HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~-~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
.++|++|+..|+.+||..|.. ++||+..+|.+||.+|||+++||+|||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999865
No 36
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.5e-18 Score=131.72 Aligned_cols=59 Identities=29% Similarity=0.281 Sum_probs=55.3
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 148 R~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.+|.+||.+|+.+|+..|..++||+..+|++||..+||+++||+|||||||+|+|+.+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999998653
No 37
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.72 E-value=1.8e-18 Score=123.22 Aligned_cols=57 Identities=35% Similarity=0.594 Sum_probs=54.7
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
++|.|++|+..|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999986
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=2.3e-18 Score=128.99 Aligned_cols=60 Identities=23% Similarity=0.358 Sum_probs=56.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 147 ARKKLRLTKEQSALLEESFKQ-HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~-~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
+++|++|+..|+.+||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 577899999999999999995 999999999999999999999999999999999998653
No 39
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.6e-18 Score=136.73 Aligned_cols=64 Identities=31% Similarity=0.516 Sum_probs=56.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 207 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 207 (293)
+..+|+|+.|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++.+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 4578889999999999999999999999999999999999999999999999999999987653
No 40
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.72 E-value=1.2e-18 Score=125.84 Aligned_cols=59 Identities=36% Similarity=0.660 Sum_probs=48.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.+.+|.|++|+..|+.+||.+|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999976
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.72 E-value=1.4e-18 Score=125.21 Aligned_cols=57 Identities=28% Similarity=0.477 Sum_probs=50.7
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 149 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
.|++||..|+.+||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 578999999999999999999999999999999999999999999999999999764
No 42
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.72 E-value=1.5e-18 Score=136.63 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
...+|+|++|+..|+.+||..|..++||+..+|++||.+|||+++||++||||||+|+|+.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 345688999999999999999999999999999999999999999999999999999998654
No 43
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-18 Score=129.88 Aligned_cols=60 Identities=25% Similarity=0.394 Sum_probs=56.2
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
+++|++||.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 356778999999999999999999999999999999999999999999999999998654
No 44
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=4e-18 Score=127.50 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=59.1
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.++.+|+|++|+..|+.+||.+|.. ++||+..+|++||.++||+++||++||||||+|+|+...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 3557788999999999999999987 999999999999999999999999999999999998654
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.71 E-value=3e-18 Score=122.10 Aligned_cols=54 Identities=31% Similarity=0.539 Sum_probs=50.9
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhh
Q 022713 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLK 204 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krk 204 (293)
+.|+..|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999974
No 46
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=5.7e-18 Score=126.63 Aligned_cols=63 Identities=27% Similarity=0.444 Sum_probs=58.7
Q ss_pred CCCCCcCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhhhh
Q 022713 147 ARKKLRLTKEQSALLEESF---KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVD 209 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F---~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~~~ 209 (293)
+|+|++|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|++.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 6789999999999999999 89999999999999999999999999999999999998765443
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=5.8e-18 Score=133.02 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=59.9
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCCCeeeeechhhhHHHHhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLN---------------LRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~Lg---------------Ls~rqVqvWFQNRRaK~Krkq~ 206 (293)
..+++|.|+.|+..|+.+||.+|..++||+..+|++||..|+ |++.+|++||||||+|+|+++.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 346788899999999999999999999999999999999999 9999999999999999998654
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-18 Score=127.30 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=57.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.++.|+.|+..|+.+||..|..++||+..++++||.++||+++||++||||||+|+|+++.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4678999999999999999999999999999999999999999999999999999998654
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-18 Score=129.18 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=56.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.+.|++||.+|+.+||..|..++||+..+|++||.++||+++||++||||||+|+|+++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 456889999999999999999999999999999999999999999999999999998654
No 50
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=1.2e-17 Score=128.79 Aligned_cols=61 Identities=28% Similarity=0.453 Sum_probs=56.9
Q ss_pred CCCCCcCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhh
Q 022713 147 ARKKLRLTKEQSALLEESF---KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 207 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F---~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 207 (293)
||+|++|+..|+.+|+.+| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999 899999999999999999999999999999999999986543
No 51
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=6.3e-18 Score=131.95 Aligned_cols=56 Identities=29% Similarity=0.474 Sum_probs=53.3
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.+||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++..
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999997654
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=5.4e-18 Score=123.58 Aligned_cols=58 Identities=26% Similarity=0.415 Sum_probs=55.6
Q ss_pred CCCCCCcCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 146 NARKKLRLTKEQSALLEESF---KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F---~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
.+++|++|+..|+.+|+.+| ..++||+..++.+||.++||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 57889999999999999999 89999999999999999999999999999999999986
No 53
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.68 E-value=7.5e-18 Score=142.40 Aligned_cols=62 Identities=29% Similarity=0.483 Sum_probs=55.7
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLK 204 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krk 204 (293)
.+++||+|++|+..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34567889999999999999999999999999999999999999999999999999999975
No 54
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.68 E-value=7e-18 Score=145.24 Aligned_cols=64 Identities=27% Similarity=0.411 Sum_probs=52.5
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
.+++||+|++|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+|+++.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 3567788999999999999999999999999999999999999999999999999999998764
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=1.8e-17 Score=119.33 Aligned_cols=55 Identities=31% Similarity=0.491 Sum_probs=53.0
Q ss_pred CCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 149 KKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
+|++|+.+|+.+||.+|.. ++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4678999999999999999 999999999999999999999999999999999986
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=127.77 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=53.8
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 149 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
++.+||.+|+.+||..|..++||+..+|++||.++||+++||+|||||||+|+|+++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 4445999999999999999999999999999999999999999999999999997553
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=6.2e-18 Score=126.81 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=54.8
Q ss_pred CCCCCCcCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhh
Q 022713 146 NARKKLRLTKEQSALLEESF-KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLK 204 (293)
Q Consensus 146 ~rR~Rt~ft~~Ql~~Le~~F-~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krk 204 (293)
..+.|.+++.+|+.+||..| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 35567788999999999999 999999999999999999999999999999999999964
No 58
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-17 Score=126.36 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=57.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
.+++|+|++|+.+|+.+|+.+|.. ++||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 356788999999999999999987 59999999999999999999999999999999998754
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=2.6e-17 Score=127.21 Aligned_cols=60 Identities=28% Similarity=0.459 Sum_probs=56.5
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
...++++|++|+.+|+.+||.+|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3456777999999999999999999 99999999999999999999999999999999997
No 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.66 E-value=2e-17 Score=127.00 Aligned_cols=60 Identities=28% Similarity=0.419 Sum_probs=54.8
Q ss_pred CCCCCcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 147 ARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
+++|++|+..|+.+||.+|.. ++||+..+|.+||..+||+++||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 456777999999999999999 999999999999999999999999999999999998643
No 61
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.66 E-value=1.9e-17 Score=141.82 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=54.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLK 204 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krk 204 (293)
.++||+|++|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4578889999999999999999999999999999999999999999999999999999974
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.6e-17 Score=128.98 Aligned_cols=63 Identities=19% Similarity=0.441 Sum_probs=58.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCCCeeeeechhhhHHHH
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQL---------------------NLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~L---------------------gLs~rqVqvWFQNRRaK~K 202 (293)
+++||.|+.|+..|+.+||..|..++||+..+|++||..| .|++.+|+|||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4578889999999999999999999999999999999999 7999999999999999999
Q ss_pred hhhh
Q 022713 203 LKQT 206 (293)
Q Consensus 203 rkq~ 206 (293)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 7654
No 63
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-17 Score=123.49 Aligned_cols=58 Identities=36% Similarity=0.565 Sum_probs=54.1
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhhh
Q 022713 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEV 208 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~~ 208 (293)
..++..|+..||..|..++||+..+|.+||.++||+++||+|||||||+|+|+++...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 4689999999999999999999999999999999999999999999999999876543
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.64 E-value=6.8e-17 Score=136.94 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=57.9
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
.+++||+|++|+..|+.+||.+|..++||+..+|.+||.++||+++||+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3567788999999999999999999999999999999999999999999999999999986
No 65
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.63 E-value=7.2e-17 Score=119.03 Aligned_cols=53 Identities=28% Similarity=0.334 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhh
Q 022713 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 205 (293)
Q Consensus 153 ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq 205 (293)
-+.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.1e-17 Score=118.44 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=51.0
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhh
Q 022713 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLK 204 (293)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krk 204 (293)
+..++..|+..||..|..++||+..+|.+||.+|||+++||+|||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 3456799999999999999999999999999999999999999999999988753
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.63 E-value=4.5e-17 Score=129.47 Aligned_cols=64 Identities=16% Similarity=0.409 Sum_probs=54.4
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCCCeeeeechhhhHHH
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQ------------------LN---LRPRQVEVWFQNRRART 201 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~------------------Lg---Ls~rqVqvWFQNRRaK~ 201 (293)
..+++|.|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3456788999999999999999999999999999999999 88 99999999999999999
Q ss_pred Hhhhh
Q 022713 202 KLKQT 206 (293)
Q Consensus 202 Krkq~ 206 (293)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 88764
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.63 E-value=7.5e-17 Score=137.45 Aligned_cols=60 Identities=30% Similarity=0.411 Sum_probs=57.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
+++||+|++|+..|+..||..|..++||+..+|.+||.++||+++||+|||||||+|+|+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 467788999999999999999999999999999999999999999999999999999997
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.1e-16 Score=118.37 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=55.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQ-HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~-~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.+++|.||.|+.+|+.+|+..|+. +.||+...|+.||.++||++++|+|||||||--.|
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 357889999999999999999999 99999999999999999999999999999997543
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=6.7e-17 Score=118.79 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=46.2
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 155 KEQSALLEESF-KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 155 ~~Ql~~Le~~F-~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
..|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 56999999999999999999999999999999999985
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.58 E-value=2.7e-16 Score=134.63 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=54.8
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhh
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQT 206 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~ 206 (293)
..+.||+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 3456888999999999999999999999999999999999999999999999999999997543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=5.2e-16 Score=114.65 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhhhhh
Q 022713 152 RLTKEQSALLEESFK---QHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDC 210 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~---~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~~~~ 210 (293)
+|+.+|+.+|+.+|. .++||+..+|.+||.++||+++||++||||||+|+|+...+..+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 799999999999999 99999999999999999999999999999999999987655443
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.42 E-value=1.3e-14 Score=128.08 Aligned_cols=61 Identities=16% Similarity=0.396 Sum_probs=53.8
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCCCeeeeechhhhHHH
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLN---------------------LRPRQVEVWFQNRRART 201 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~Lg---------------------Ls~rqVqvWFQNRRaK~ 201 (293)
..++||.|+.|+..|+.+||..|..++||+..+|++||..++ |++.+|++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 345688899999999999999999999999999999999999 99999999999999998
Q ss_pred Hh
Q 022713 202 KL 203 (293)
Q Consensus 202 Kr 203 (293)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=106.14 Aligned_cols=54 Identities=28% Similarity=0.346 Sum_probs=50.8
Q ss_pred CcCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhh
Q 022713 151 LRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLK 204 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~---~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krk 204 (293)
..|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 35899999999999987 9999999999999999999999999999999999864
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.9e-13 Score=101.62 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHH
Q 022713 155 KEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (293)
Q Consensus 155 ~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK 200 (293)
++|+..|+.+|..+++|+..++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.29 E-value=7.5e-13 Score=118.59 Aligned_cols=59 Identities=19% Similarity=0.411 Sum_probs=53.1
Q ss_pred cCCCCCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCCCeeeeechhhhHHH
Q 022713 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLN---------------------LRPRQVEVWFQNRRART 201 (293)
Q Consensus 143 ~~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~Lg---------------------Ls~rqVqvWFQNRRaK~ 201 (293)
..+.||.|+.|+..|+.+|+..|..++||+..+|++||..+| |++.||++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 345678899999999999999999999999999999999988 89999999999999864
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.26 E-value=4.6e-13 Score=126.76 Aligned_cols=56 Identities=34% Similarity=0.661 Sum_probs=53.1
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
++.|+.|+..|+..||+.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45677899999999999999999999999999999999999999999999999876
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.87 E-value=6.3e-11 Score=77.68 Aligned_cols=24 Identities=38% Similarity=0.677 Sum_probs=20.2
Q ss_pred CeeeeechhhhHHHHhhhhhhhhH
Q 022713 188 RQVEVWFQNRRARTKLKQTEVDCE 211 (293)
Q Consensus 188 rqVqvWFQNRRaK~Krkq~~~~~e 211 (293)
+||+|||||||+|||+++.+...+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~ 24 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARD 24 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTT
T ss_pred CCceeccHHHHHHHHHHhHHHHHH
Confidence 699999999999999988765443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.08 E-value=0.013 Score=43.23 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechh
Q 022713 157 QSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (293)
Q Consensus 157 Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQN 196 (293)
-.+.|+.+|..++.+.......|+.+..|+..||+-||-.
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3578999999999999999999999999999999999953
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=88.87 E-value=0.41 Score=36.57 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=20.3
Q ss_pred hHHHHhhhhh----hhhHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 022713 198 RARTKLKQTE----VDCEFLKKCCETLTDENRRLHKELQELKAL 237 (293)
Q Consensus 198 RaK~Krkq~~----~~~e~Lk~~~~~l~~en~~l~~e~~~l~al 237 (293)
|.|.|+++.. ...+.|...+..|..+...|..|+..|+.+
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433 333455555555555555555555555544
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=81.64 E-value=0.21 Score=37.58 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCcCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCCCCeeeeech
Q 022713 150 KLRLTKEQSALLEESFKQH-STLNPKQKQALARQLNLRPRQVEVWFQ 195 (293)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~-~~ps~~~r~~LA~~LgLs~rqVqvWFQ 195 (293)
|..|+.++....-..+... .. -..++|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3468888876655555332 22 256899999999999999974
No 82
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=73.31 E-value=7.3 Score=28.95 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=15.5
Q ss_pred hHHHHhhhhhhhhHHHHHHhhHhhHHHHHHHHHHHHH
Q 022713 198 RARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQEL 234 (293)
Q Consensus 198 RaK~Krkq~~~~~e~Lk~~~~~l~~en~~l~~e~~~l 234 (293)
|.|.|+++...+ +......|..||..|+.++..|
T Consensus 29 rSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 29 KSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444333 2333444445555555554444
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=67.26 E-value=4.1 Score=31.67 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=38.7
Q ss_pred CCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHH
Q 022713 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 200 (293)
Q Consensus 148 R~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK 200 (293)
++|.+||.++...+-..+..+.... ..+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 4577899999888777775555544 2368999999999999999877653
No 84
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=64.80 E-value=2.1 Score=29.20 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=31.1
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeech
Q 022713 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQ 195 (293)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQ 195 (293)
|..|+.++...+...+... ........++|.++|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4578888877665555433 22111256899999999999999964
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=60.65 E-value=6.9 Score=28.66 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCCCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeec
Q 022713 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWF 194 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWF 194 (293)
++.+..|+.++....-..+... . -..+||+++|++...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 3456689998865555555432 2 25688999999999998886
No 86
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.32 E-value=24 Score=26.10 Aligned_cols=41 Identities=24% Similarity=0.258 Sum_probs=34.2
Q ss_pred hHHHHhhhhhhhhHHHHHHhhHhhHHHHHHHHHHHHHHHhh
Q 022713 198 RARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELKALK 238 (293)
Q Consensus 198 RaK~Krkq~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~al~ 238 (293)
..|.+-.......+.|...+..|..+...|.+|+..|+.+-
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888889999999999999999999999887653
No 87
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=56.94 E-value=28 Score=24.40 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=13.4
Q ss_pred hhHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 022713 209 DCEFLKKCCETLTDENRRLHKELQELKA 236 (293)
Q Consensus 209 ~~e~Lk~~~~~l~~en~~l~~e~~~l~a 236 (293)
..+.|...+..|..+...|+.|+..|+.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555544443
No 88
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.75 E-value=17 Score=24.87 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=24.5
Q ss_pred hhhhHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 022713 207 EVDCEFLKKCCETLTDENRRLHKELQELKA 236 (293)
Q Consensus 207 ~~~~e~Lk~~~~~l~~en~~l~~e~~~l~a 236 (293)
..+.+.|+..+..|+..+..|.+++.++++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888765
No 89
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=55.95 E-value=28 Score=26.27 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=32.7
Q ss_pred HhhhhhhhhHHHHHHhhHhhHHHHHHHHHHHHHHH-hhhcCCccccCCcccccCCC
Q 022713 202 KLKQTEVDCEFLKKCCETLTDENRRLHKELQELKA-LKLAQPLYMHMPAATLTMCP 256 (293)
Q Consensus 202 Krkq~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~a-l~~~~~~~~~~p~a~~~~c~ 256 (293)
-+.........+....+.|..||..|+.++..|.. +..--.++++.|..-+..+.
T Consensus 30 SR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~~~ 85 (87)
T 1hjb_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhcccc
Confidence 34556666777888889999999999999998854 32223556666665444333
No 90
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=54.50 E-value=5.9 Score=29.10 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.++..|..+|...|-... .-.+||..||++...|+.+...-|.+.|
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 488888888888664332 3568999999999999987754444443
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=54.02 E-value=37 Score=23.40 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=13.2
Q ss_pred hhhHHHHHHhhHhhHHHHHHHHHHHHHH
Q 022713 208 VDCEFLKKCCETLTDENRRLHKELQELK 235 (293)
Q Consensus 208 ~~~e~Lk~~~~~l~~en~~l~~e~~~l~ 235 (293)
...+.|...+..|..+...|+.++..|+
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555544444
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=52.91 E-value=12 Score=28.35 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
...++..+..+|...+... .-.+||..||+++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3469999999998866433 2378999999999999988765544443
No 93
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=51.53 E-value=7.1 Score=24.08 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=28.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechh
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQN 196 (293)
.++.++...+...+... + + ..+||+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~-s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V-S---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHhh
Confidence 56777765555555432 2 2 567999999999999988753
No 94
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=49.91 E-value=6.8 Score=29.20 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
.++..|..+|...+... ...+||..||++...|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 58999999998864433 23689999999999999887655555543
No 95
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=49.70 E-value=3.2 Score=26.31 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhh
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRR 198 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRR 198 (293)
.++.++...+...+... . ...+||..+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35666665555555433 2 246799999999999999986544
No 96
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.69 E-value=43 Score=23.31 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=12.3
Q ss_pred HHHHHHhhHhhHHHHHHHHHHHHH
Q 022713 211 EFLKKCCETLTDENRRLHKELQEL 234 (293)
Q Consensus 211 e~Lk~~~~~l~~en~~l~~e~~~l 234 (293)
..|....+.|..+|..|+.++..|
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544
No 97
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=49.18 E-value=18 Score=26.96 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=35.8
Q ss_pred CCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--CCCeeeeec
Q 022713 149 KKLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNL--RPRQVEVWF 194 (293)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgL--s~rqVqvWF 194 (293)
....++.+|+..|+..|.. +.+.+..+...+...+|+ +..+|+.+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3446899999999999975 568999999998888885 455555555
No 98
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=48.36 E-value=12 Score=29.70 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=23.9
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhh
Q 022713 158 SALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 207 (293)
Q Consensus 158 l~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 207 (293)
+.+++-.|+.|+||...- -+| =-.|||.|||.+|..
T Consensus 15 vRiIkiLyQSNPyP~peG-----------TRq---aRRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEG-----------TRQ---ARRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHSSCCCCCCC-----------CTT---THHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCC-----------chh---hhHhHHHHHHHHHHH
Confidence 455666688999998641 111 126899999987753
No 99
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.06 E-value=10 Score=25.95 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=33.8
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
..++..|..+|...+. .+ ...++|..+|++...|+.+...-+.|.+
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4589999999988532 22 3467999999999999887765554444
No 100
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=46.90 E-value=37 Score=21.23 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=19.7
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHh
Q 022713 213 LKKCCETLTDENRRLHKELQELKAL 237 (293)
Q Consensus 213 Lk~~~~~l~~en~~l~~e~~~l~al 237 (293)
|....+.|..+|..|+.++..|+++
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4455667888899999999888876
No 101
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=45.53 E-value=27 Score=26.98 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
.+++.|..++...|.... .-.++|..+|++...|+.|...-|.+.|+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 578888888888764432 24689999999999999998766655543
No 102
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.45 E-value=12 Score=26.91 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=34.0
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
..++..+..+|...+.. + .-.+||..+|++...|+.+..+-+.|.+
T Consensus 20 ~~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLIAQG--L----PNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHHTTT--C----CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 35899999999885322 1 3568999999999999987765555444
No 103
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=45.36 E-value=51 Score=24.70 Aligned_cols=34 Identities=32% Similarity=0.294 Sum_probs=28.3
Q ss_pred hhhhhhHHHHHHhhHhhHHHHHHHHHHHHHHHhh
Q 022713 205 QTEVDCEFLKKCCETLTDENRRLHKELQELKALK 238 (293)
Q Consensus 205 q~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~al~ 238 (293)
..-.+++.|....+.+.+|+..+++++.+|+.+.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888999999999999999999987764
No 104
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=44.43 E-value=9.7 Score=25.81 Aligned_cols=46 Identities=13% Similarity=-0.057 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.+++.+..+|...|.... .-.++|..+|++...|+.|...-|.+.|
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478888999988764331 2468999999999999887754444433
No 105
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=44.43 E-value=37 Score=21.14 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=19.7
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHh
Q 022713 213 LKKCCETLTDENRRLHKELQELKAL 237 (293)
Q Consensus 213 Lk~~~~~l~~en~~l~~e~~~l~al 237 (293)
|....+.|..+|..|+.|+..|+.+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445567888999999999998876
No 106
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.59 E-value=7.7 Score=27.15 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.+++.+..+|..+|. .+ ...++|..+|++...|+.+..+-+.|.+
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 377888888877432 22 2358999999999999887765555444
No 107
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=42.74 E-value=42 Score=26.50 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=33.5
Q ss_pred CCCCcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCCCe
Q 022713 148 RKKLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQ 189 (293)
Q Consensus 148 R~Rt~ft~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgLs~rq 189 (293)
.+|..+|.+|+..|+..|.. ..+.+..+...+.+.||+....
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 34567999999999999975 5689999998888889876543
No 108
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=41.33 E-value=32 Score=26.49 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
.+++.+..+|...|.... .-.++|..+|++...|+.+...-|.+.|+
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888887764332 34689999999999999988655555543
No 109
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=39.62 E-value=68 Score=22.44 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=22.3
Q ss_pred hhhHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 022713 208 VDCEFLKKCCETLTDENRRLHKELQELKAL 237 (293)
Q Consensus 208 ~~~e~Lk~~~~~l~~en~~l~~e~~~l~al 237 (293)
.....|....+.|..+|..|..++..|+.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677778888999999988887653
No 110
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=38.81 E-value=33 Score=27.35 Aligned_cols=52 Identities=10% Similarity=0.159 Sum_probs=38.9
Q ss_pred CCCCCcCCHHHHHHHHHHH-hhCCCCCHHHHHHHH-HHh--CCCCCeeeeechhhh
Q 022713 147 ARKKLRLTKEQSALLEESF-KQHSTLNPKQKQALA-RQL--NLRPRQVEVWFQNRR 198 (293)
Q Consensus 147 rR~Rt~ft~~Ql~~Le~~F-~~~~~ps~~~r~~LA-~~L--gLs~rqVqvWFQNRR 198 (293)
+++|.++|-+|...+-..+ ..++..+..+....| .++ +++...|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 5778899999999999999 677777655444432 267 778888988886653
No 111
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=38.51 E-value=17 Score=26.60 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=23.7
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHhhhhh
Q 022713 158 SALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE 207 (293)
Q Consensus 158 l~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 207 (293)
+.++.-.|+.++||+..--.. | =.|||.+|+.+|..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 455666788999998542111 1 15899999987754
No 112
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=37.94 E-value=17 Score=26.49 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=34.4
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHHh
Q 022713 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKL 203 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~Kr 203 (293)
..++..+..+|...+... ...+||..||++...|+.+..+-|.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 358999999998854322 23478999999999999887655555543
No 113
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=36.80 E-value=10 Score=26.02 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.+++.+..+|...|....+- ...-.+||..+|++...|+.+...-+.|.|
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888999998888321110 112467999999999999987654444433
No 114
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.11 E-value=44 Score=23.10 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=16.9
Q ss_pred hHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 022713 210 CEFLKKCCETLTDENRRLHKELQELKA 236 (293)
Q Consensus 210 ~e~Lk~~~~~l~~en~~l~~e~~~l~a 236 (293)
...|....+.|..+|..|..++..|..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777666643
No 115
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=35.05 E-value=91 Score=21.15 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=21.1
Q ss_pred hhHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 022713 209 DCEFLKKCCETLTDENRRLHKELQELKA 236 (293)
Q Consensus 209 ~~e~Lk~~~~~l~~en~~l~~e~~~l~a 236 (293)
-.+.|......|..||..|..++..|..
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677888999999999887754
No 116
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.04 E-value=93 Score=21.64 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=25.2
Q ss_pred hhhhhHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 022713 206 TEVDCEFLKKCCETLTDENRRLHKELQELKA 236 (293)
Q Consensus 206 ~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~a 236 (293)
+......|....+.|..+|..|..++..|..
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888899999999999999988854
No 117
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.71 E-value=90 Score=23.06 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=28.4
Q ss_pred hhhHHHHhhhhhhhhHHHHHHhhHhhHHHHHHHHHHHHH
Q 022713 196 NRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQEL 234 (293)
Q Consensus 196 NRRaK~Krkq~~~~~e~Lk~~~~~l~~en~~l~~e~~~l 234 (293)
+||.|.+-.+...+.+.|++-.+.|..-...|+..+.+|
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l 51 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRL 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467777777788888888887777777666666666555
No 118
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.69 E-value=19 Score=25.05 Aligned_cols=48 Identities=6% Similarity=0.071 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 152 RLTKEQSALLEESFKQH--STLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~--~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.+++.+..+|...|-.. .-. .-.+||..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~---s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH---TLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47889999999888521 112 2358999999999999987754444433
No 119
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=33.10 E-value=1.4e+02 Score=21.83 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=27.2
Q ss_pred hhhhHHHHHHhhHhhHHHHHHHHHHHHHHHhh
Q 022713 207 EVDCEFLKKCCETLTDENRRLHKELQELKALK 238 (293)
Q Consensus 207 ~~~~e~Lk~~~~~l~~en~~l~~e~~~l~al~ 238 (293)
+.+.+.||.....|.+.|.+|+.|..-|+.+.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45778899999999999999999988887764
No 120
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.91 E-value=1.1e+02 Score=21.24 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=28.6
Q ss_pred hhhhhhhHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 022713 204 KQTEVDCEFLKKCCETLTDENRRLHKELQELKAL 237 (293)
Q Consensus 204 kq~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~al 237 (293)
...+.+.+.|...+..|..+...|+.++..|+.+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778899999999999999999999988654
No 121
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.84 E-value=53 Score=23.02 Aligned_cols=28 Identities=32% Similarity=0.170 Sum_probs=19.8
Q ss_pred hhhhhhHHHHHHhhHhhHHHHHHHHHHH
Q 022713 205 QTEVDCEFLKKCCETLTDENRRLHKELQ 232 (293)
Q Consensus 205 q~~~~~e~Lk~~~~~l~~en~~l~~e~~ 232 (293)
..+...+.|...+..|..+...|+.++.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666788888888888888877664
No 122
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=32.75 E-value=80 Score=19.97 Aligned_cols=29 Identities=38% Similarity=0.334 Sum_probs=18.7
Q ss_pred hhhHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 022713 208 VDCEFLKKCCETLTDENRRLHKELQELKA 236 (293)
Q Consensus 208 ~~~e~Lk~~~~~l~~en~~l~~e~~~l~a 236 (293)
++++.|.+..+.-.++..+|+++..+|..
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45666666666666777777776666543
No 123
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=32.25 E-value=20 Score=27.73 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHH
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRART 201 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~ 201 (293)
.++..+..+|. .|-.. + .-.+||..||++...|+.+...-|.+.
T Consensus 109 ~L~~~~r~v~~-~~~~g-~----s~~EIA~~lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-Y----SYREIATILSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-C----CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-C----CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 57888888888 44322 2 356899999999999988775444333
No 124
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=31.50 E-value=92 Score=19.30 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=18.5
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHh
Q 022713 213 LKKCCETLTDENRRLHKELQELKAL 237 (293)
Q Consensus 213 Lk~~~~~l~~en~~l~~e~~~l~al 237 (293)
|....+.|..+|..|+.|+..|+.+
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344567788888888888888775
No 125
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.50 E-value=1.2e+02 Score=20.76 Aligned_cols=30 Identities=30% Similarity=0.333 Sum_probs=24.5
Q ss_pred hhhhHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 022713 207 EVDCEFLKKCCETLTDENRRLHKELQELKA 236 (293)
Q Consensus 207 ~~~~e~Lk~~~~~l~~en~~l~~e~~~l~a 236 (293)
......|....+.|..+|..|+.++..|..
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888999999999999998854
No 126
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.93 E-value=50 Score=25.08 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=20.6
Q ss_pred hhhhhHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 022713 206 TEVDCEFLKKCCETLTDENRRLHKELQELKA 236 (293)
Q Consensus 206 ~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~a 236 (293)
.+.+...|....+.|..|+.++..+++.++.
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666677777778888777776643
No 127
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.91 E-value=31 Score=24.91 Aligned_cols=48 Identities=6% Similarity=0.115 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 152 RLTKEQSALLEESFKQH--STLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~--~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.++..+..+|...|-.. .-. .-.+||..+|++...|+.|...-+.|.|
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47888999998887521 112 2467899999999999988754444443
No 128
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=28.74 E-value=1.2 Score=37.05 Aligned_cols=30 Identities=0% Similarity=-0.063 Sum_probs=21.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhCCCCCH
Q 022713 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP 173 (293)
Q Consensus 144 ~~~rR~Rt~ft~~Ql~~Le~~F~~~~~ps~ 173 (293)
...+|.|+.|+..|++.|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 346788999999999999999999999864
No 129
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.37 E-value=92 Score=22.41 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=19.2
Q ss_pred hhhhhhHHHHHHhhHhhHHHHHHHHHHHHHH
Q 022713 205 QTEVDCEFLKKCCETLTDENRRLHKELQELK 235 (293)
Q Consensus 205 q~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~ 235 (293)
..+.....|...+..+..||..|+.++..|.
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666777777777776664
No 130
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.36 E-value=1.2e+02 Score=22.86 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=7.6
Q ss_pred ccCCCCCccC
Q 022713 252 LTMCPSCERI 261 (293)
Q Consensus 252 ~~~c~sc~~~ 261 (293)
...||.|++.
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 4569999864
No 131
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=28.08 E-value=1.1e+02 Score=19.01 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=18.4
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHh
Q 022713 213 LKKCCETLTDENRRLHKELQELKAL 237 (293)
Q Consensus 213 Lk~~~~~l~~en~~l~~e~~~l~al 237 (293)
|....+.|..+|..|+.|+..|+.+
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344567788888888888888765
No 132
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.70 E-value=1.5e+02 Score=20.33 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=26.8
Q ss_pred hhhhhhhHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 022713 204 KQTEVDCEFLKKCCETLTDENRRLHKELQELKA 236 (293)
Q Consensus 204 kq~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~a 236 (293)
...+...+.|...+..|..+...|+.++..|+.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777788999999999999999999887654
No 133
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.32 E-value=23 Score=25.61 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCCCeeeeec
Q 022713 152 RLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWF 194 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgLs~rqVqvWF 194 (293)
.++.++...++..|.. ..+.+..+...+...+|++..+|+.+|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 5788999999999975 457888888888888888766555444
No 134
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.30 E-value=34 Score=25.19 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=32.1
Q ss_pred CCCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhH
Q 022713 149 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRA 199 (293)
Q Consensus 149 ~Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRa 199 (293)
....+|..+..+|...++-. ...+||..||++++.|+....+-+.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34469999999998877322 3568999999999998876554333
No 135
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=25.60 E-value=32 Score=25.60 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=30.7
Q ss_pred CCcCCHHHHHHHHHHHhhC--CCCCH-HHHHHHHHHhCCCCCeeeeech
Q 022713 150 KLRLTKEQSALLEESFKQH--STLNP-KQKQALARQLNLRPRQVEVWFQ 195 (293)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~--~~ps~-~~r~~LA~~LgLs~rqVqvWFQ 195 (293)
+.+|+.++....-..+... .+.+. ....++|.++|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4468888875544444221 12222 3567899999999999999964
No 136
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.41 E-value=1.4e+02 Score=22.33 Aligned_cols=33 Identities=30% Similarity=0.259 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHhhHhhHHHHHHHHHHHHHHHhh
Q 022713 206 TEVDCEFLKKCCETLTDENRRLHKELQELKALK 238 (293)
Q Consensus 206 ~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~al~ 238 (293)
.-.+++.|....+.+.+|...|++++.+|+.+.
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777778888888877776653
No 137
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.97 E-value=1.3e+02 Score=18.76 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=18.7
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHh
Q 022713 213 LKKCCETLTDENRRLHKELQELKAL 237 (293)
Q Consensus 213 Lk~~~~~l~~en~~l~~e~~~l~al 237 (293)
|....+.|..+|..|+.|+..|+.+
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344567788888899998888775
No 138
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=24.05 E-value=17 Score=25.92 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=33.2
Q ss_pred CcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCCCeeeeec
Q 022713 151 LRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWF 194 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgLs~rqVqvWF 194 (293)
..++.+++..|...|.. ..+.+..+...+...+|++..+|+.+|
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~ 67 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVF 67 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHH
Confidence 35788889999999864 557888888888888887665555554
No 139
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.89 E-value=34 Score=28.31 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.++..+..+|...|-.. ....+||..||++...|+.+...-|.+.|
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 47888888888877432 13468999999999999887754444443
No 140
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.79 E-value=23 Score=25.76 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCCCeeeeec
Q 022713 152 RLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWF 194 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgLs~rqVqvWF 194 (293)
.++.++...|+..|.. ..+.+..+...+...+|++...|+.+|
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 4677889999999864 457888888887777887766655444
No 141
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.76 E-value=1.4e+02 Score=25.93 Aligned_cols=32 Identities=34% Similarity=0.298 Sum_probs=21.6
Q ss_pred hhhhhHHHHHHhhHhhHHHHHHHHHHHHHHHh
Q 022713 206 TEVDCEFLKKCCETLTDENRRLHKELQELKAL 237 (293)
Q Consensus 206 ~~~~~e~Lk~~~~~l~~en~~l~~e~~~l~al 237 (293)
.-.+++.|....+.+.+|...|++++.+|+.|
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777776666544
No 142
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.67 E-value=1.6e+02 Score=19.35 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=17.1
Q ss_pred hhhhhhHHHHHHhhHhhHHHHHHHHHH
Q 022713 205 QTEVDCEFLKKCCETLTDENRRLHKEL 231 (293)
Q Consensus 205 q~~~~~e~Lk~~~~~l~~en~~l~~e~ 231 (293)
|.+.+...|.+....|.+|..+|+.++
T Consensus 21 qlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 445555566666667777777776665
No 143
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=23.38 E-value=36 Score=27.35 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 152 ~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
.++..+..+|...|-.. . .-.+||..+|++...|+.+...-|.+.|
T Consensus 140 ~L~~~~r~vl~l~~~~g--~---s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG--L---SYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp HSCHHHHHHHHHHHTTC--C---CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 36777888887765433 1 2468999999999999988764444433
No 144
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=22.95 E-value=35 Score=27.34 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCeeeeechhhh
Q 022713 176 KQALARQLNLRPRQVEVWFQNRR 198 (293)
Q Consensus 176 r~~LA~~LgLs~rqVqvWFQNRR 198 (293)
...+|..+|++..+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999986554
No 145
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.09 E-value=1.7e+02 Score=22.61 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=13.7
Q ss_pred hhhHHHHHHhhHhhHHHHHHHHHH
Q 022713 208 VDCEFLKKCCETLTDENRRLHKEL 231 (293)
Q Consensus 208 ~~~e~Lk~~~~~l~~en~~l~~e~ 231 (293)
.....|....+.|..||++|..+.
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666554
No 146
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.04 E-value=86 Score=25.17 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=29.7
Q ss_pred CcCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCCC
Q 022713 151 LRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPR 188 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~-----~~~ps~~~r~~LA~~LgLs~r 188 (293)
+.||.+|+..|+..|.. ..+.+..+...+...+|+...
T Consensus 3 ~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 3 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 46889999999999865 557888888888888876544
No 147
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=21.03 E-value=47 Score=19.59 Aligned_cols=12 Identities=42% Similarity=0.568 Sum_probs=9.3
Q ss_pred hhhhHHHHhhhh
Q 022713 195 QNRRARTKLKQT 206 (293)
Q Consensus 195 QNRRaK~Krkq~ 206 (293)
.|||.+|+.+|.
T Consensus 7 RnRRRRWR~Rq~ 18 (26)
T 1etf_B 7 RNRRRRWRERQR 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 488899987665
No 148
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.75 E-value=1.3e+02 Score=17.29 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=16.1
Q ss_pred HHHHHhhHhhHHHHHHHHHHHHH
Q 022713 212 FLKKCCETLTDENRRLHKELQEL 234 (293)
Q Consensus 212 ~Lk~~~~~l~~en~~l~~e~~~l 234 (293)
.|+.+...|..|-+.|+.|+..|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 45666677777777787777654
No 149
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=20.41 E-value=54 Score=27.84 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=35.3
Q ss_pred CCcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhhHHHH
Q 022713 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 (293)
Q Consensus 150 Rt~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRRaK~K 202 (293)
...+|+.+..+|.-.++-. .-.+||..||++++.|+.+..|-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4469999999997764322 2468999999999999988766555544
No 150
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=20.36 E-value=58 Score=22.43 Aligned_cols=41 Identities=2% Similarity=-0.026 Sum_probs=32.1
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhhh
Q 022713 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRR 198 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNRR 198 (293)
..++.+.+..+....... ..+||..+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 368888888887664322 46799999999999999987765
No 151
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.30 E-value=90 Score=26.92 Aligned_cols=34 Identities=9% Similarity=-0.090 Sum_probs=22.8
Q ss_pred CcCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCCCeeeeechhh
Q 022713 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNR 197 (293)
Q Consensus 151 t~ft~~Ql~~Le~~F~~~~~ps~~~r~~LA~~LgLs~rqVqvWFQNR 197 (293)
+.|+..|+..|... ...+.+|++-.+|+..+.++
T Consensus 43 R~y~~~~~~~l~~i-------------~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 43 RYYTDSQLIHLDLI-------------KSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp EEEETGGGGHHHHH-------------HHHHHTTCCHHHHHHHTTSC
T ss_pred cccCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHHhC
Confidence 35888888888443 23466777777777776654
No 152
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.13 E-value=2.5e+02 Score=22.18 Aligned_cols=15 Identities=7% Similarity=-0.042 Sum_probs=11.9
Q ss_pred CCcCCHHHHHHHHHH
Q 022713 150 KLRLTKEQSALLEES 164 (293)
Q Consensus 150 Rt~ft~~Ql~~Le~~ 164 (293)
...|+..++..|...
T Consensus 38 ~R~Y~~~dl~~l~~I 52 (142)
T 3gp4_A 38 VRKFGAEDLRWILFT 52 (142)
T ss_dssp CBCBCHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH
Confidence 457999999998655
Done!