BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022716
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 38/267 (14%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVRGVA 105
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDD 130
+ P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA + D
Sbjct: 106 FSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDK 161
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRYFAVGS 189
+ + WN G++ TG ++ + +A P G+ A S
Sbjct: 162 TVKL----------------------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 199
Query: 190 ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 249
D V LW+ + L ++T T VR ++FS G IASAS+D + + N G+ +
Sbjct: 200 DDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 257
Query: 250 IPC-RAAMNSVEWNPKYNLLAYAGDDK 275
+ +++N V + P +A A DDK
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDK 284
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 135/286 (47%), Gaps = 35/286 (12%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V+ VA+ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 310
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVG---- 126
+ P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA
Sbjct: 311 FSPD-GQTIASASDDKTVKLWN-RNGQHLQ--TLTGHSSSVWGVAFSPDGQTIASASDDK 366
Query: 127 -----NRDDELTILDVRKFKPIHRRKFGYEVNEIA----------WNMTGEMFFLTTG-N 170
NR+ +L + F + IA WN G++ TG +
Sbjct: 367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 426
Query: 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 230
+ + +A P + A S D V LW+ + L ++T T VR ++FS G IASA
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASA 485
Query: 231 SEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDK 275
S+D + + N G+ + + +++ V ++P +A A DDK
Sbjct: 486 SDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 530
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 38/269 (14%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H + TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVRG 390
Query: 72 LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNR 128
+ + P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PD IA +
Sbjct: 391 VAFSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDDQTIASASD 446
Query: 129 DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRYFAV 187
D + + WN G++ TG ++ +A P G+ A
Sbjct: 447 DKTVKL----------------------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484
Query: 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
S D V LW+ + L ++T T VR ++FS G IASAS+D + + N G+ +
Sbjct: 485 ASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 542
Query: 248 HQIPC-RAAMNSVEWNPKYNLLAYAGDDK 275
+ +++ V ++P +A A DK
Sbjct: 543 QTLTGHSSSVWGVAFSPDGQTIASASSDK 571
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 127/267 (47%), Gaps = 38/267 (14%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 146
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDD 130
+ P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA + D
Sbjct: 147 FSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDK 202
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRYFAVGS 189
+ + WN G++ TG ++ +A P G+ A S
Sbjct: 203 TVKL----------------------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 240
Query: 190 ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 249
D V LW+ + L ++T T V ++F G IASAS+D + + N G+ +
Sbjct: 241 DDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQT 298
Query: 250 IPC-RAAMNSVEWNPKYNLLAYAGDDK 275
+ +++ V ++P +A A DDK
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDK 325
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 36/231 (15%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 433
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAVGNRDD 130
+ P IA+AS DKTV+LW+ R+G+ Q L+G + ++ + PDG IA + D
Sbjct: 434 FSPDD-QTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDK 489
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRYFAVGS 189
+ + WN G++ TG ++ +A P G+ A S
Sbjct: 490 TVKL----------------------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527
Query: 190 ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240
D V LW+ + L ++T T V ++FS G IASAS D + + N
Sbjct: 528 DDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 5 SIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
S P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + +
Sbjct: 5 STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TI 60
Query: 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGT 121
GH + + W ++L+ +AS DKT+++WD SGKC + + S + P
Sbjct: 61 SGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 236 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 295
Query: 271 AGDDKNK 277
A + +K
Sbjct: 296 AALENDK 302
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 271 AGDDKNK 277
A + +K
Sbjct: 303 AALENDK 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 68
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 69 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 125
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 242 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 301
Query: 271 AGDDKNK 277
A + +K
Sbjct: 302 AALENDK 308
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 51/321 (15%)
Query: 1 MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
MG S K ++ ++T GH K V SV ++ G LAS S D+ ++W GK +
Sbjct: 5 MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFE 61
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
+ GH + + W ++L+ +AS DKT+++WD SGKC + L G + +
Sbjct: 62 K-TISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--- 167
+ P I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 168 -------TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTF 208
T + C ID P G+Y + D+ + LWD S+ C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 209 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 264
T K E +FS T G +I S SED + I N+ T V ++ + S +P
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 265 YNLLAYAGDDKNK----YQAD 281
N++A A + +K Y++D
Sbjct: 294 ENIIASAALENDKTIKLYKSD 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 85
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 86 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 142
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 259 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 318
Query: 271 AGDDKNK 277
A + +K
Sbjct: 319 AALENDK 325
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 271 AGDDKNK 277
A + +K
Sbjct: 303 AALENDK 309
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 138/313 (44%), Gaps = 47/313 (15%)
Query: 1 MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
MG S K ++ ++T GH K V SV ++ G LAS S D+ ++W K
Sbjct: 5 MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
+ GH + + W ++L+ +AS DKT+++WD SGKC + L G + +
Sbjct: 64 ---ISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--- 167
+ P I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 168 -------TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTF 208
T + C ID P G+Y + D+ + LWD S+ C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 209 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 264
T K E +FS T G +I S SED + I N+ T V ++ + S +P
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 265 YNLLAYAGDDKNK 277
N++A A + +K
Sbjct: 294 ENIIASAALENDK 306
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 80
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 81 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 137
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 253
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 254 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 313
Query: 271 AGDDKNK 277
A + +K
Sbjct: 314 AALENDK 320
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 271 AGDDKNK 277
A + +K
Sbjct: 303 AALENDK 309
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 87
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 88 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 144
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 260
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 261 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 320
Query: 271 AGDDKNK 277
A + +K
Sbjct: 321 AALENDK 327
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 64 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 120
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
Query: 271 AGDDKNK 277
A + +K
Sbjct: 297 AALENDK 303
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 64
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 65 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 121
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 237
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 238 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 297
Query: 271 AGDDKNK 277
A + +K
Sbjct: 298 AALENDK 304
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 64 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 120
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
Query: 271 AGDDKNK 277
A + +K
Sbjct: 297 AALENDK 303
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 136/305 (44%), Gaps = 43/305 (14%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 59
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
H + + W ++L+ +AS DKT+++WD SGKC + + S + P I
Sbjct: 60 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT----------T 168
G+ D+ + I DV+ K P H V+ + +N G + + T
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 169 GNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWP 214
+ C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 215 VRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 272
+FS T G +I S SED + I N+ T V ++ + S +P N++A A
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 273 DDKNK 277
+ +K
Sbjct: 295 LENDK 299
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 140/313 (44%), Gaps = 47/313 (15%)
Query: 1 MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
MG S K ++ ++T GH K V SV ++ G LA+ S D+ ++W GK +
Sbjct: 5 MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY---DGKFE 61
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
+ GH + + W ++L+ +AS DKT+++WD SGKC + L G + +
Sbjct: 62 K-TISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLT--- 167
+ P I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 168 -------TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTF 208
T + C ID P G+Y + D+ + LWD S+ C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 209 T--KLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPK 264
T K E +FS T G +I S SED + I N+ T V ++ + S +P
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 265 YNLLAYAGDDKNK 277
N++A A + +K
Sbjct: 294 ENIIASAALENDK 306
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ +T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 67 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Query: 271 AGDDKNK 277
A + +K
Sbjct: 300 AALENDK 306
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 47/307 (15%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ +T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 67 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLT--------- 167
I G+ D+ + I DV+ K P H V+ + +N G + +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 168 -TGNAGCYCIAID------------PMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLE 212
T + C ID P G+Y + D+ + LWD S+ C++T+T K E
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNE 239
Query: 213 WPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAY 270
+FS T G +I S SED + I N+ T V ++ + S +P N++A
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Query: 271 AGDDKNK 277
A + +K
Sbjct: 300 AALENDK 306
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 40/287 (13%)
Query: 9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
+NL++ + SV ++ G LA+G+ D+ R+W IE + K+ I L+GH
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE---NRKIVMI-LQGHEQD 167
Query: 69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGN 127
+ L + P D + + SGD+TVR+WD R+G+CS + + P DG +IA G+
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEI-AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA 186
D + + D + G+ V + + N +G T Y + G+
Sbjct: 227 LDRAVRVWD---------SETGFLVERLDSENESG-----TGHKDSVYSVVFTRDGQSVV 272
Query: 187 VGSADSLVSLWDISEM------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDL 234
GS D V LW++ C T+ + V +++ + +YI S S+D
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Query: 235 FIDISNVHTGRTV-------HQIPCRAAMNSVEWNPKYNLLAYAGDD 274
+ + +G + + + A N P+YN+ A D
Sbjct: 333 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 379
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 3 ESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
+S P Y GHK V SVA + SGS D+ W + G+ + L
Sbjct: 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD-KKSGNPL---LML 348
Query: 63 RGHADSVDQLC------WDPKHADLIATASGDKTVRLW 94
+GH +SV + P++ ++ AT SGD R+W
Sbjct: 349 QGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIW 385
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 112/250 (44%), Gaps = 16/250 (6%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R GH V ++++ +G LAS S D T ++W + G ++ + GH +V +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ--GFECIRT--MHGHDHNVSSVS 199
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP--DGTHIAVGNRDDE 131
P + D I +AS DKT+++W+ ++G C + E + + +P DGT IA + D
Sbjct: 200 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV-RPNQDGTLIASCSNDQT 257
Query: 132 LTILDV-RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA 190
+ + V K R+ + V I+W ++ + P G + GS
Sbjct: 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPFLLSGSR 316
Query: 191 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250
D + +WD+S +C+ T + VR + F G +I S ++D + + + R
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR----- 371
Query: 251 PCRAAMNSVE 260
C +N+ E
Sbjct: 372 -CMKTLNAHE 380
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDG 120
L GH V ++ + P + ++ +AS D T+++WD +G + + +++ +I++ G
Sbjct: 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
+A + D + + D + F+ I R G++ N ++I P
Sbjct: 163 KLLASCSADMTIKLWDFQGFECI-RTMHGHDHN-------------------VSSVSIMP 202
Query: 181 MGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASEDLFIDIS 239
G + S D + +W++ CV+TFT EW VR + + G IAS S D + +
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 240 NVHTGRTVHQI-PCRAAMNSVEWNPK--YNLLAYAGDDKNKYQADEGVFRIYG 289
V T ++ R + + W P+ Y+ ++ A + K G F + G
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V V ++ G + S + D+T RVW + K L H V L + K
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT----LNAHEHFVTSLDFH-K 390
Query: 78 HADLIATASGDKTVRLWDAR 97
A + T S D+TV++W+ R
Sbjct: 391 TAPYVVTGSVDQTVKVWECR 410
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 123/297 (41%), Gaps = 56/297 (18%)
Query: 15 EYTGHKKKVHSVAWNC-----TGTKLASGSVDQTARVWHIEPHGHGK-----VKDIELRG 64
+ TGH+ V S+A C T TK+ S S D+T W P H + D L G
Sbjct: 8 QLTGHRGWVTSLA--CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEG 65
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGT 121
H+ V + + + +AS D ++RLW+ ++G+C Q + G +++ + PD
Sbjct: 66 HSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQC--QYKFLGHTKDVLSVAFSPDNR 122
Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-MFFLTTGNAGCY--CIAI 178
I G RD+ L + WN+ GE M L+ G + C+
Sbjct: 123 QIVSGGRDNALRV----------------------WNVKGECMHTLSRGAHTDWVSCVRF 160
Query: 179 DPM--GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI 236
P G D+LV +WD++ V V +++ S G AS+ +D
Sbjct: 161 SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVA 220
Query: 237 DISNVHTGRTVHQIPCRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEGVFRIYGFEN 292
+ ++ G + ++ A +N + ++P +Y + A A E RI+ EN
Sbjct: 221 RLWDLTKGEALSEMAAGAPINQICFSPNRYWMCA----------ATEKGIRIFDLEN 267
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 21/187 (11%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLC 73
++ GH K V SVA++ ++ SG D RVW+++ G+ RG H D V +
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK----GECMHTLSRGAHTDWVSCVR 159
Query: 74 WDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRD 129
+ P A +I + D V++WD +G+ +L G ++T PDG+ A ++D
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRL--VTDLKGHTNYVTSVTVSPDGSLCASSDKD 217
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS 189
+ D+ K + + G +N+I + + N C A + R F + +
Sbjct: 218 GVARLWDLTKGEALSEMAAGAPINQICF----------SPNRYWMCAATEKGIRIFDLEN 267
Query: 190 ADSLVSL 196
D +V L
Sbjct: 268 KDIIVEL 274
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 115/301 (38%), Gaps = 58/301 (19%)
Query: 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
L R GH V VA + G S S D + R+W+++ +G + K GH V
Sbjct: 58 LPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ-NGQCQYK---FLGHTKDVL 113
Query: 71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INITYKPDGTHIAV 125
+ + P + ++ + D +R+W+ + G+C + + D I
Sbjct: 114 SVAFSPDNRQIV-SGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185
G D+ + + D+ + + ++ G ++T+ + + P G
Sbjct: 172 GGWDNLVKVWDLATGRLVT-------------DLKGHTNYVTS-------VTVSPDGSLC 211
Query: 186 AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE-----------DL 234
A D + LWD+++ + P+ I FS ++ +A+E D+
Sbjct: 212 ASSDKDGVARLWDLTKGEALSEMAAGA-PINQICFSPNRYWMCAATEKGIRIFDLENKDI 270
Query: 235 FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA-DEGVFRIYGF-EN 292
++++ H G S + P+ +A++ D Y + V R++G EN
Sbjct: 271 IVELAPEHQG-------------SKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
Query: 293 A 293
A
Sbjct: 318 A 318
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 34/237 (14%)
Query: 14 REYTGHKKKVHSVAWNCTGTK----LASGSVDQTARVWHIEPHGHGKVKDIE--LRGHAD 67
++ H + SVAW + + +GS+D +VW + D++ L GH
Sbjct: 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD----ERLDLQWSLEGHQL 81
Query: 68 SVDQLCWDPKHADLIATASG-DKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAV 125
V + D H IA +S D +RLWD +GK + + + + + PD ++A
Sbjct: 82 GVVSV--DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185
G ++ I V K + + L T IA P G+Y
Sbjct: 140 GTHVGKVNIFGVESGK--------------------KEYSLDTRGKFILSIAYSPDGKYL 179
Query: 186 AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242
A G+ D +++++DI+ + T P+R+++FS + +AS+D +I I +V
Sbjct: 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 37/239 (15%)
Query: 63 RGHADSVDQLCW---DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD 119
+ H D++ + W ++++ + T S D V++W R + Q L G + + D
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVD 87
Query: 120 GTHI----AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175
+H A + D + + D+ K I + G +
Sbjct: 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKS--------------------IDAGPVDAWT 127
Query: 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 235
+A P +Y A G+ V+++ + + + +I++S G Y+AS + D
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 236 IDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA 293
I+I ++ TG+ +H + A + S+ ++P LL A DD G +IY ++A
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD--------GYIKIYDVQHA 238
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 36/248 (14%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVD--QLCW 74
GH+ V SV + T AS S+D R+W +E +GK +K I+ A VD L +
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE---NGKQIKSID----AGPVDAWTLAF 130
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELT 133
P + +AT + V ++ SGK + G+ I +I Y PDG ++A G D +
Sbjct: 131 SPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC------------------ 175
I D+ K +H + G+ + + + + L T + Y
Sbjct: 190 IFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 176 -----IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 230
+A P +F S+D V +WD+ CV TF + V + ++ G I S
Sbjct: 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308
Query: 231 SEDLFIDI 238
+D I I
Sbjct: 309 GDDQEIHI 316
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 48/290 (16%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
T H+ +H + GT+LA+ S D++ +++ + G + D LRGH V Q+ W
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD--LRGHEGPVWQVAWAH 67
Query: 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPD--GTHIAVGNRDD 130
P + +++A+ S D+ V +W +G + E +G + ++ + P G +A G+ D
Sbjct: 68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG 127
Query: 131 ELTIL--------DVRKFKPIHRRKFGYEVNEIAWN---MTGEMFFLTTGNAGCYCIAID 179
+++L +V+K H N ++W + G + +G Y
Sbjct: 128 AISLLTYTGEGQWEVKKINNAHT----IGCNAVSWAPAVVPGSLIDHPSGQKPNYI---- 179
Query: 180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE----WPVRTISFSHT----GDYIASAS 231
+ FA G D+L+ LW E + KLE W VR ++++ + IAS S
Sbjct: 180 ---KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW-VRDVAWAPSIGLPTSTIASCS 235
Query: 232 EDLFIDI-------SNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274
+D + I SN + + +H+ + V W+ N+LA +G D
Sbjct: 236 QDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGD 283
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 32/189 (16%)
Query: 13 SREYTGHKKKVHSVAW--NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
S E+ GH V+SV W + G LA GS D + G +VK I H +
Sbjct: 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-NAHTIGCN 154
Query: 71 QLCW----------------DPKHADLIATASGDKTVRLW-DARSGKCSQQAELSGEN-- 111
+ W P + A+ D ++LW + G+ ++ +L +
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214
Query: 112 -INITYKPD----GTHIAVGNRDDELTILDV-----RKFKPIHRRKFGYEVNEIAWNMTG 161
++ + P + IA ++D + I + P KF V ++W++T
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA 274
Query: 162 EMFFLTTGN 170
+ ++ G+
Sbjct: 275 NILAVSGGD 283
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 122/306 (39%), Gaps = 53/306 (17%)
Query: 35 LASGSVDQTARVWHI---EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
L SGS D+T +W + E +G+ + L GH V L ++ I++ S DKT+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTL 100
Query: 92 RLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR------------ 138
RLWD R+G ++ E ++ + PD I + E+ + ++
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 139 --------KFKPIHRR------------KFGYEVNEIAWNMTGEM-FFLTTGNAGCYCIA 177
++ PI + G++ WN ++ + + ++
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLS 220
Query: 178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW----PVRTISFSHTGDYIASASED 233
I P G+Y A G D + +WDI + T+ + E+ + I+F+ ++A + D
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDILNL----TYPQREFDAGSTINQIAFNPKLQWVAVGT-D 275
Query: 234 LFIDISNVHTGR-----TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA-DEGVFRI 287
+ I N+ T T+ P A NP+ LA+ K + +GV R
Sbjct: 276 QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRT 335
Query: 288 YGFENA 293
+ FE +
Sbjct: 336 FSFETS 341
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GH+ +V+SVA++ ++ S ++ ++W+I G K E H+D V +
Sbjct: 112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI--LGECKFSSAEKENHSDWVSCVR 169
Query: 74 WDP---------KHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHI 123
+ P A A+ D +++W+ + + + N+N ++ P+G +I
Sbjct: 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYI 228
Query: 124 AVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWN 158
A G +D +L I D+ P G +N+IA+N
Sbjct: 229 ATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFN 264
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 37/243 (15%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V + C G ++ SGS D T +VW GK L GH V W +
Sbjct: 116 GHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVT---GKCLR-TLVGHTGGV----WSSQ 166
Query: 78 HAD-LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
D +I + S D+T+++W+A +G+C + + + + G+RD L + D
Sbjct: 167 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWD 225
Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVGSADSLVS 195
+ TG+ + G+ A C+ D GR G+ D +V
Sbjct: 226 IE---------------------TGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVK 262
Query: 196 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA 255
+WD C+ T V ++ F G ++ S S D I + +V TG +H + +
Sbjct: 263 VWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320
Query: 256 MNS 258
+ S
Sbjct: 321 LTS 323
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 35/239 (14%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
+ SGS D+T +VW+ E G+ L GH +V + H + + S D T+R+W
Sbjct: 172 IISGSTDRTLKVWNAET---GECIH-TLYGHTSTVRCM---HLHEKRVVSGSRDATLRVW 224
Query: 95 DARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILDVR--------------- 138
D +G+C L G + + DG + G D + + D
Sbjct: 225 DIETGQCLHV--LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282
Query: 139 ---KFKPIHRRKFGYEVNEIAWNM-TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLV 194
+F IH + + W++ TG TG+ ++ G+ADS V
Sbjct: 283 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDNILVSGNADSTV 341
Query: 195 SLWDISEMLCVRTF---TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250
+WDI C++T K + V + F+ +++ ++S+D + + ++ TG + +
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
LH+ + GH +V+S+ ++ G + SGS+D + RVW +E L GH
Sbjct: 272 LHTLQ--GHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHT----LTGHQSLTS 323
Query: 71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN 111
+ +++ + + D TV++WD ++G+C Q L G N
Sbjct: 324 GM---ELKDNILVSGNADSTVKIWDIKTGQCLQ--TLQGPN 359
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
+D E+ + ++ K ++ EV +A + ++L A G ++DP
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 267
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 32/246 (13%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152
WD +G+ Q+ + +++ + I G+RD + +
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV------------------ 133
Query: 153 NEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCV 205
W + G+ G N + + P + + SA D +V W++++
Sbjct: 134 ----WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 266 NLLAYA 271
LA A
Sbjct: 250 YWLAAA 255
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 15 EYTGHKKKVH----SVAWNCTGTKLASGSVDQTARVWHI 49
E+ G+ K S+AW+ G L +G D RVW +
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 95 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 149
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 207
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
+D E+ + ++ K ++ EV +A + ++L A G ++DP
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 261
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 32/246 (13%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 85
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152
WD +G+ Q+ + +++ + I G+RD + +
Sbjct: 86 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV------------------ 127
Query: 153 NEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCV 205
W + G+ G N + + P + + SA D +V W++++
Sbjct: 128 ----WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 183
Query: 206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 184 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 243
Query: 266 NLLAYA 271
LA A
Sbjct: 244 YWLAAA 249
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 15 EYTGHKKKVH----SVAWNCTGTKLASGSVDQTARVWHI 49
E+ G+ K S+AW+ G L +G D RVW +
Sbjct: 271 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 114/302 (37%), Gaps = 56/302 (18%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH++ V VAW+ G LAS S D T +W V +E GH + V + W P
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPS 116
Query: 78 HADLIATASGDKTVRLWDARSG---KCSQQAELSGENI-NITYKPDGTHIAVGNRDDELT 133
+L+AT S DK+V +W+ +C +++ ++ + P +A + DD +
Sbjct: 117 -GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSL 193
+ Y E W L + + +A DP G+ A S D
Sbjct: 176 L---------------YREEEDDWVCCAT---LEGHESTVWSLAFDPSGQRLASCSDDRT 217
Query: 194 VSLW----------------DIS-EMLCV------RTFTKLEWPVRT--ISFSHTGDYIA 228
V +W D S + +C RT + W T ++ + D I
Sbjct: 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIR 277
Query: 229 SASEDLFIDISNVHTGRTVHQIPCRAA-MNSVEWNPKY-NLLAYAGDDKN----KYQADE 282
ED D T H + +N V WNPK LLA DD KYQ E
Sbjct: 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
Query: 283 GV 284
G+
Sbjct: 338 GL 339
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 26/219 (11%)
Query: 26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHADSVDQLCWDPKHADLIAT 84
+AWN GT LAS D+ R+W E G + K + GH +V ++ W P + +A+
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPC-GNYLAS 78
Query: 85 ASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
AS D T +W L G E ++ + P G +A +RD + + +V +
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE-- 136
Query: 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 201
+ YE + + T ++ + P A S D V L+ E
Sbjct: 137 -----EDEYECVSVLNSHTQDVKH----------VVWHPSQELLASASYDDTVKLYREEE 181
Query: 202 --MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 238
+C T E V +++F +G +AS S+D + I
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 14/119 (11%)
Query: 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDIS--EMLCVRTFTK-LEWPVRTISFSHTGDY 226
++ C+ +A +P G A D + +W +C ++ + VR +++S G+Y
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY 75
Query: 227 IASASEDLFIDISNVHTGRTVHQIPCRAAMN-------SVEWNPKYNLLAYAGDDKNKY 278
+ASAS D + + C + SV W P NLLA DK+ +
Sbjct: 76 LASAS----FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW 130
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
+D E+ + ++ K ++ EV +A + ++L A G ++DP
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 267
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 32/246 (13%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152
WD +G+ Q+ + +++ + I G+RD + +
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV------------------ 133
Query: 153 NEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCV 205
W + G+ G N + + P + + SA D +V W++++
Sbjct: 134 ----WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 266 NLLAYA 271
LA A
Sbjct: 250 YWLAAA 255
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
+D E+ + ++ K ++ EV +A + ++L A G ++DP
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 267
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 32/224 (14%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R + GH V G S S D+T R+W + G+ GH V +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGETYQ-RFVGHKSDVMSVD 114
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDD 130
D K A +I + S DKT+++W + G+C A L G N + P+ DD
Sbjct: 115 ID-KKASMIISGSRDKTIKVWTIK-GQC--LATLLGHNDWVSQVRVVPNEKA-----DDD 165
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTG---EMFFLTTGNAGCYCIAIDPMGRYFAV 187
+TI+ K + AWN+ E F+ N+ + P G A
Sbjct: 166 SVTIISAGNDKMVK-----------AWNLNQFQIEADFIGH-NSNINTLTASPDGTLIAS 213
Query: 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
D + LW+++ + T + + V +++FS ++A+A+
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAAT 256
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 32/246 (13%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152
WD +G+ Q+ + +++ + I G+RD + +
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV------------------ 133
Query: 153 NEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCV 205
W + G+ G N + + P + + SA D +V W++++
Sbjct: 134 ----WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 266 NLLAYA 271
LA A
Sbjct: 250 YWLAAA 255
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDP 180
+D E+ + ++ K ++ EV +A + ++L A G ++DP
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDP 267
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 32/224 (14%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R + GH V G S S D+T R+W + G+ GH V +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGETYQ-RFVGHKSDVMSVD 114
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDD 130
D K A +I + S DKT+++W + G+C A L G N + P+ DD
Sbjct: 115 ID-KKASMIISGSRDKTIKVWTIK-GQC--LATLLGHNDWVSQVRVVPNEKA-----DDD 165
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTG---EMFFLTTGNAGCYCIAIDPMGRYFAV 187
+TI+ K + AWN+ E F+ N+ + P G A
Sbjct: 166 SVTIISAGNDKMVK-----------AWNLNQFQIEADFIGH-NSNINTLTASPDGTLIAS 213
Query: 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
D + LW+++ + T + + V +++FS ++A+A+
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAAT 256
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 32/246 (13%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152
WD +G+ Q+ + +++ + I G+RD + +
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV------------------ 133
Query: 153 NEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCV 205
W + G+ G N + + P + + SA D +V W++++
Sbjct: 134 ----WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265
F + T++ S G IASA +D I + N+ + ++ + + + S+ ++P
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 266 NLLAYA 271
LA A
Sbjct: 250 YWLAAA 255
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 15 EYTGHKKKVH----SVAWNCTGTKLASGSVDQTARVWHI 49
E+ G+ K S+AW+ G L +G D RVW +
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GCYCIAIDPM 181
+D E+ + ++ K + EV +A + ++L A G ++DP
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSAQDEVFSLA--FSPNRYWLAAATATGIKVFSLDPQ 268
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 32/224 (14%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R + GH V G S S D+T R+W + G+ GH V +
Sbjct: 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGETYQ-RFVGHKSDVXSVD 114
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDD 130
D K A I + S DKT+++W + G+C A L G N + P+ DD
Sbjct: 115 ID-KKASXIISGSRDKTIKVWTIK-GQC--LATLLGHNDWVSQVRVVPNEKA-----DDD 165
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTG---EMFFLTTGNAGCYCIAIDPMGRYFAV 187
+TI+ K + AWN+ E F+ N+ + P G A
Sbjct: 166 SVTIISAGNDKXVK-----------AWNLNQFQIEADFIGH-NSNINTLTASPDGTLIAS 213
Query: 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
D + LW+++ T + + V +++FS ++A+A+
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLAAAT 256
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 94/246 (38%), Gaps = 32/246 (13%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152
WD +G+ Q+ ++ ++ + I G+RD + +
Sbjct: 92 WDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV------------------ 133
Query: 153 NEIAWNMTGEMFFLTTG-NAGCYCIAIDPMGRY----FAVGSA--DSLVSLWDISEMLCV 205
W + G+ G N + + P + + SA D V W++++
Sbjct: 134 ----WTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265
F + T++ S G IASA +D I + N+ + + + + + S+ ++P
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNR 249
Query: 266 NLLAYA 271
LA A
Sbjct: 250 YWLAAA 255
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 15 EYTGHKKKVH----SVAWNCTGTKLASGSVDQTARVWHI 49
E+ G+ K S+AW+ G L +G D RVW +
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 13 SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVD 70
SR TGHK S + T+L +GS DQT +W + + E GH V
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 71 QLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAELSGENINITYKPDGTHIAVGNR 128
L + +A++ + S D TVRLWD R S G+ ++ + PDG G+
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 129 DDELTILDVRKFK--PIHRRKFGYEVNE------IAWNMTGEMFFLTTGNAGCY 174
D + D+R ++ R+ NE +A++++G + F N CY
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY 323
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 96/255 (37%), Gaps = 34/255 (13%)
Query: 7 PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA 66
P + R GH KV+S+ W + S S D VW+ K I+L H
Sbjct: 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT--SQKTHAIKL--HC 108
Query: 67 DSVDQLCWDPKHADLIATASGDKTVRLWDA-----RSGKCSQQAELSGEN---INITYKP 118
V + + P + +A D +++ R G L+G + Y P
Sbjct: 109 PWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP 167
Query: 119 DG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177
D T + G+ D + DV + I FG E F + A ++
Sbjct: 168 DQETRLITGSGDQTCVLWDVTTGQRI--SIFGSE-------------FPSGHTADVLSLS 212
Query: 178 IDPM-GRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF 235
I+ + F GS D+ V LWD+ VRT+ E + ++ F G + S+D
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
Query: 236 IDISNVHTGRTVHQI 250
+ ++ TG HQ+
Sbjct: 273 CRLFDMRTG---HQL 284
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+R + GH K V SVA++ ++ SGS D+T ++W+ V+D H++ V +
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 177
Query: 73 CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
+ P ++ I + G DK V++W+ + K + +G +T PDG+ A G +D
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIA------------------WNMTGEMF-------F 165
+ + D+ + K ++ G +N + W++ G++
Sbjct: 238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 166 LTTGNAG----CYCIAIDPMGRYFAVGSADSLVSLWDIS 200
++T + C +A G+ G D+LV +W ++
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 32/224 (14%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS---QQAELSGEN---INIT 115
L+GH V Q+ P+ D+I +AS DKT+ +W + + Q L G + ++
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175
DG G+ D L + D+ RR G+ + ++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVLS------------------- 133
Query: 176 IAIDPMGRYFAVGSADSLVSLWDISEML--CVRTFTKLEWPVRTISFS--HTGDYIASAS 231
+A R GS D + LW+ + V+ + EW V + FS + I S
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW-VSCVRFSPNSSNPIIVSCG 192
Query: 232 EDLFIDISNVHTGRT-VHQIPCRAAMNSVEWNPKYNLLAYAGDD 274
D + + N+ + + I +N+V +P +L A G D
Sbjct: 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 76/192 (39%), Gaps = 29/192 (15%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R GH V V + G SGS D T R+W + + GH V +
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR----RFVGHTKDVLSVA 135
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENIN-ITYKPDGTH-IAVGNRD 129
+ + +++ S DKT++LW+ G C + Q E E ++ + + P+ ++ I V
Sbjct: 136 FSSDNRQIVS-GSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS 189
D+L + + ++ N G +L T + + P G A G
Sbjct: 194 DKLV------------KVWNLANCKLKTNHIGHTGYLNT-------VTVSPDGSLCASGG 234
Query: 190 ADSLVSLWDISE 201
D LWD++E
Sbjct: 235 KDGQAMLWDLNE 246
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+R + GH K V SVA++ ++ SGS D+T ++W+ V+D H++ V +
Sbjct: 98 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 154
Query: 73 CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
+ P ++ I + G DK V++W+ + K + +G +T PDG+ A G +D
Sbjct: 155 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIA------------------WNMTGEMF-------F 165
+ + D+ + K ++ G +N + W++ G++
Sbjct: 215 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 166 LTTGNAG----CYCIAIDPMGRYFAVGSADSLVSLWDIS 200
++T + C +A G+ G D+LV +W ++
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 32/224 (14%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS---QQAELSGEN---INIT 115
L+GH V Q+ P+ D+I +AS DKT+ +W + + Q L G + ++
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175
DG G+ D L + D+ RR G+ + ++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVLS------------------- 110
Query: 176 IAIDPMGRYFAVGSADSLVSLWDISEML--CVRTFTKLEWPVRTISFS--HTGDYIASAS 231
+A R GS D + LW+ + V+ + EW V + FS + I S
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW-VSCVRFSPNSSNPIIVSCG 169
Query: 232 EDLFIDISNVHTGRT-VHQIPCRAAMNSVEWNPKYNLLAYAGDD 274
D + + N+ + + I +N+V +P +L A G D
Sbjct: 170 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 213
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 29/195 (14%)
Query: 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
+ R GH V V + G SGS D T R+W + + GH V
Sbjct: 54 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR----RFVGHTKDVL 109
Query: 71 QLCWDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENIN-ITYKPDGTH-IAVG 126
+ + + +++ S DKT++LW+ G C + Q E E ++ + + P+ ++ I V
Sbjct: 110 SVAFSSDNRQIVS-GSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 167
Query: 127 NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA 186
D+L + + ++ N G +L T + + P G A
Sbjct: 168 CGWDKLV------------KVWNLANCKLKTNHIGHTGYLNT-------VTVSPDGSLCA 208
Query: 187 VGSADSLVSLWDISE 201
G D LWD++E
Sbjct: 209 SGGKDGQAMLWDLNE 223
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 24/195 (12%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H +GH ++V + W G LASG D VW P G V H +V
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 72 LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-- 127
+ W P ++++AT G D+ +R+W+ SG C + + +I + P + G+
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 261
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187
++L I + K T + LT + P G A
Sbjct: 262 AQNQLVIWKYPTMAKVAELK----------GHTSRVLSLT----------MSPDGATVAS 301
Query: 188 GSADSLVSLWDISEM 202
+AD + LW E+
Sbjct: 302 AAADETLRLWRCFEL 316
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 88 DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPI- 143
D +V LW A SG Q Q E GE I+ + + +G ++AVG E+ + DV++ K +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 144 HRRKFGYEVNEIAWN------------------MTGEMFFLT-TGNAGCYC-IAIDPMGR 183
+ V ++WN E T +G++ C + P GR
Sbjct: 104 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163
Query: 184 YFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASEDLFI 236
+ A G D+LV++W + + ++TFT+ + V+ +++ + + + D I
Sbjct: 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223
Query: 237 DISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 268
I NV +G + + + + S+ W+P Y L
Sbjct: 224 RIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 255
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
+ SVAW G LA G+ ++W ++ + + H+ V L W+ + ++
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWN---SYIL 122
Query: 83 ATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTI 134
++ S + D R + A LSG E + + PDG H+A G D+ + +
Sbjct: 123 SSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 176
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 182 GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 241
G Y AVG++ + V LWD+ + +R T R S S ++S S I +V
Sbjct: 79 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGSRSGHIHHHDV 136
Query: 242 HTGRTVHQIPCRAAMNS----VEWNPKYNLLAYAGDD 274
H + + + + W P LA G+D
Sbjct: 137 RVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGND 171
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 16 YTGHKKKVHSVAWNCTGTK---LASGSVDQ-TARVWHIEPHGHGKVKDIELRGHADSVDQ 71
+TGH HS C + LA ++ Q +W+I+ ++K + RGH V
Sbjct: 843 HTGH----HSTIQYCDFSPYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWVHG 894
Query: 72 LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
+ + P + + TAS D+T+R+W+ + C A + + I++ ++ + T +
Sbjct: 895 VMFSPDGSSFL-TASDDQTIRVWETKK-VCKNSAIVLKQEIDVVFQENETMV-------- 944
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD 191
L + ++R + I + TG++ +L C C++ P Y A G D
Sbjct: 945 LAVDNIRGLQLIAGK-------------TGQIDYLPEAQVSCCCLS--PHLEYVAFGDED 989
Query: 192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
+ + ++ + + VR I F+ G + S+SED I + N TG V
Sbjct: 990 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
KNL H V+ ++ G ++AS D+T +V+ E K ++++ H D
Sbjct: 610 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHED 665
Query: 68 SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
V LC D IAT S DK V++WD+ +GK + E +N T K + +
Sbjct: 666 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR 183
A G+ D L + D+ + K FG+ N+ +C P
Sbjct: 724 ATGSNDFFLKLWDLNQ-KECRNTMFGHT------------------NSVNHC-RFSPDDE 763
Query: 184 YFAVGSADSLVSLWDI------SEMLCVRTFTKLEWP-------VRTISFSHTGDYIASA 230
A SAD + LWD+ + R F E P V+ S+S GD I A
Sbjct: 764 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 823
Query: 231 SED--LFIDI------SNVHTG 244
+++ L DI + +HTG
Sbjct: 824 AKNKVLLFDIHTSGLLAEIHTG 845
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 34/189 (17%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD--QLCW 74
GHKK V + + G L S S D +VW+ + + + L+ H ++V +L
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-----VFLQAHQETVKDFRLLQ 1061
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELT 133
D + + + S D TV++W+ +G+ + G ++ D T + + D
Sbjct: 1062 DSR----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1117
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY-CIAIDPMGRYFAVGSADS 192
I P+H K G+ GC C A G A G +
Sbjct: 1118 IWSFDLLSPLHELK---------------------GHNGCVRCSAFSLDGILLATGDDNG 1156
Query: 193 LVSLWDISE 201
+ +W++S+
Sbjct: 1157 EIRIWNVSD 1165
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH---IEPHGHGKVKDIELRGHADSVD 70
R++T H+ V S A + TK +S S D+TA++W + P K + +R A S+D
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 71 QLCWDPKHADLIATASGDKTVRLWDARSGK 100
+ L+AT + +R+W+ G+
Sbjct: 1146 GI--------LLATGDDNGEIRIWNVSDGQ 1167
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 37/236 (15%)
Query: 16 YTGHKKKVHSVAWNCTGTK---LASGSVDQ-TARVWHIEPHGHGKVKDIELRGHADSVDQ 71
+TGH HS C + LA ++ Q +W+I+ ++K + RGH V
Sbjct: 836 HTGH----HSTIQYCDFSPYDHLAVIALSQYCVELWNID----SRLKVADCRGHLSWVHG 887
Query: 72 LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE 131
+ + P + + TAS D+T+R+W+ + C A + + I++ ++ + T +
Sbjct: 888 VMFSPDGSSFL-TASDDQTIRVWETKK-VCKNSAIVLKQEIDVVFQENETMV-------- 937
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD 191
L + ++R + I + TG++ +L C C++ P Y A G D
Sbjct: 938 LAVDNIRGLQLIAGK-------------TGQIDYLPEAQVSCCCLS--PHLEYVAFGDED 982
Query: 192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
+ + ++ + + VR I F+ G + S+SED I + N TG V
Sbjct: 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
KNL H V+ ++ G ++AS D+T +V+ E K ++++ H D
Sbjct: 603 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHED 658
Query: 68 SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
V LC D IAT S DK V++WD+ +GK + E +N T K + +
Sbjct: 659 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR 183
A G+ D L + D+ + K FG+ N+ +C P
Sbjct: 717 ATGSNDFFLKLWDLNQ-KECRNTMFGHT------------------NSVNHC-RFSPDDE 756
Query: 184 YFAVGSADSLVSLWDI------SEMLCVRTFTKLEWP-------VRTISFSHTGDYIASA 230
A SAD + LWD+ + R F E P V+ S+S GD I A
Sbjct: 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816
Query: 231 SED--LFIDI------SNVHTG 244
+++ L DI + +HTG
Sbjct: 817 AKNKVLLFDIHTSGLLAEIHTG 838
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 34/189 (17%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD--QLCW 74
GHKK V + + G L S S D +VW+ + + + L+ H ++V +L
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-----VFLQAHQETVKDFRLLQ 1054
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELT 133
D + + + S D TV++W+ +G+ + G ++ D T + + D
Sbjct: 1055 DSR----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1110
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY-CIAIDPMGRYFAVGSADS 192
I P+H K G+ GC C A G A G +
Sbjct: 1111 IWSFDLLSPLHELK---------------------GHNGCVRCSAFSLDGILLATGDDNG 1149
Query: 193 LVSLWDISE 201
+ +W++S+
Sbjct: 1150 EIRIWNVSD 1158
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH---IEPHGHGKVKDIELRGHADSVD 70
R++T H+ V S A + TK +S S D+TA++W + P K + +R A S+D
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 71 QLCWDPKHADLIATASGDKTVRLWDARSGK 100
+ L+AT + +R+W+ G+
Sbjct: 1139 GI--------LLATGDDNGEIRIWNVSDGQ 1160
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 24/217 (11%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H +GH ++V + W G LASG D VW P G V H +V
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 72 LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-- 127
+ W P ++++AT G D+ +R+W+ SG C + + +I + P + G+
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 352
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187
++L I + K T + LT + P G A
Sbjct: 353 AQNQLVIWKYPTMAKVAELK----------GHTSRVLSLT----------MSPDGATVAS 392
Query: 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224
+AD + LW E+ R + + S H G
Sbjct: 393 AAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 429
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 39/216 (18%)
Query: 88 DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
D +V LW A SG Q Q E GE I+ + + +G ++AVG E+ + DV++ K +
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID------------------------ 179
V ++WN + L++G+ + D
Sbjct: 195 NMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 180 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSH-TGDYIAS--ASE 232
P GR+ A G D+LV++W + + ++TFT+ + V+ +++ + +A+ +
Sbjct: 251 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 310
Query: 233 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 268
D I I NV +G + + + + S+ W+P Y L
Sbjct: 311 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 346
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
+ SVAW G LA G+ ++W ++ + + H+ V L W+ + ++
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWN---SYIL 213
Query: 83 ATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTI 134
++ S + D R + A LSG E + + PDG H+A G D+ + +
Sbjct: 214 SSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 267
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 182 GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 241
G Y AVG++ + V LWD+ + +R T R S S ++S S I +V
Sbjct: 170 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGSRSGHIHHHDV 227
Query: 242 HTGRTVHQIPCRAAMNS----VEWNPKYNLLAYAGDD 274
H + + + + W P LA G+D
Sbjct: 228 RVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGND 262
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 24/217 (11%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H +GH ++V + W G LASG D VW P G V H +V
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 72 LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-- 127
+ W P ++++AT G D+ +R+W+ SG C + + +I + P + G+
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 341
Query: 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187
++L I + K T + LT + P G A
Sbjct: 342 AQNQLVIWKYPTMAKVAELK----------GHTSRVLSLT----------MSPDGATVAS 381
Query: 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224
+AD + LW E+ R + + S H G
Sbjct: 382 AAADETLRLWRCFELDPARRREREKASAAKSSLIHQG 418
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 88 DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
D +V LW A SG Q Q E GE I+ + + +G ++AVG E+ + DV++ K +
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 145 RR-KFGYEVNEIAWN------------------MTGEMFFLT-TGNAGCYC-IAIDPMGR 183
V ++WN E T +G++ C + P GR
Sbjct: 184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 243
Query: 184 YFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFSHTGDYIAS---ASEDLFI 236
+ A G D+LV++W + + ++TFT+ + V+ +++ + + + D I
Sbjct: 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303
Query: 237 DISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 268
I NV +G + + + + S+ W+P Y L
Sbjct: 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKEL 335
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
+ SVAW G LA G+ ++W ++ + + H+ V L W+ + ++
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWN---SYIL 202
Query: 83 ATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTI 134
++ S + D R + A LSG E + + PDG H+A G D+ + +
Sbjct: 203 SSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 182 GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 241
G Y AVG++ + V LWD+ + +R T R S S ++S S I +V
Sbjct: 159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGSRSGHIHHHDV 216
Query: 242 HTGRTVHQIPCRAAMNS----VEWNPKYNLLAYAGDD 274
H + + + + W P LA G+D
Sbjct: 217 RVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGND 251
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEP-HGHGKVKDIE--LRGHADSVDQLC 73
GH+K+ + ++WN + L S S D T +W I GK+ D + GH+ V+ +
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHI-AVGNR 128
W H L + + D+ + +WD RS S+ + L + E +++ P I A G+
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 129 DDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
D + + D+R K +H E+ ++ W+ E ++G
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 18/196 (9%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + + H V+ L
Sbjct: 225 FTGHSAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRSNTTSKPSHL-VDAHTAEVNCLS 282
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K S E + + P + T +A D
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 131 ELTILDVRKFKPIHRRKFGYEVN-EIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVG 188
L + D+ K G E + E A + E+ F+ G+ A + +P +
Sbjct: 343 RLNVWDL--------SKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS 394
Query: 189 -SADSLVSLWDISEML 203
S D+++ +W ++E +
Sbjct: 395 VSEDNIMQIWQMAENI 410
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 27/191 (14%)
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
D+ LRGH L W+ + + +AS D TV LWD +G ++ ++
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAG--PKEGKIV---------- 219
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE---IAW----NMTGEMFFLTTGN- 170
D I G+ +++ + +H FG ++ + W N T + L +
Sbjct: 220 DAKAIFTGHS----AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHT 275
Query: 171 AGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYI 227
A C++ +P + A GSAD V+LWD+ + L + TF + + + +S H +
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL 335
Query: 228 ASASEDLFIDI 238
AS+ D +++
Sbjct: 336 ASSGTDRRLNV 346
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEP-HGHGKVKDIE--LRGHADSVDQLC 73
GH+K+ + ++WN + L S S D T +W I GK+ D + GH+ V+ +
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHI-AVGNR 128
W H L + + D+ + +WD RS S+ + L + E +++ P I A G+
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 129 DDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
D + + D+R K +H E+ ++ W+ E ++G
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + + H V+ L
Sbjct: 225 FTGHSAVVEDVAWHLLHESLF-GSVADDQKLXIWDTRSNTTSKPSHL-VDAHTAEVNCLS 282
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K S E + + P + T +A D
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 343 RLNVWDLSKI 352
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 27/191 (14%)
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
D+ LRGH L W+ + + +AS D TV LWD +G ++ ++
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAG--PKEGKIV---------- 219
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE---IAW----NMTGEMFFLTTGN- 170
D I G+ +++ + +H FG ++ W N T + L +
Sbjct: 220 DAKAIFTGHS----AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHT 275
Query: 171 AGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYI 227
A C++ +P + A GSAD V+LWD+ + L + TF + + + +S H +
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL 335
Query: 228 ASASEDLFIDI 238
AS+ D +++
Sbjct: 336 ASSGTDRRLNV 346
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D+T +W + + K+K H D + Q+ W P + ++A++ D+ + +W
Sbjct: 291 LATGSADKTVALWDLR---NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 95 DARSGKCSQQAE 106
D Q AE
Sbjct: 348 DLSKIGEEQSAE 359
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 8 FKNLHSREYT--GHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE-- 61
+NL + +T HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 62 -------LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D ++W
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 47 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 105
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 106 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
++G+ C +++ P R F G+ D+ LWD+
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 283
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
+ SV ++ LL DD N
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFN 304
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 25/219 (11%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
V + A+ +G +A G +D +++++ EL GH + C + I
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQI 168
Query: 83 ATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
T+SGD T LWD +G+ + +G+ ++++ PD G D + DVR+
Sbjct: 169 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-- 226
Query: 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI-- 199
+ R+ F ++I NA C+ P G FA GS D+ L+D+
Sbjct: 227 GMCRQTFTGHESDI--------------NAICFF----PNGNAFATGSDDATCRLFDLRA 268
Query: 200 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 238
+ L + + + ++SFS +G + + +D ++
Sbjct: 269 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 307
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQL 72
+ +TGH+ ++++ + G A+GS D T R++ + D EL ++ D++ +
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-------DQELMTYSHDNI--I 281
Query: 73 CWD-----PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGTHIA 124
C K L+ D +WDA K + L+G + ++ DG +A
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVWDAL--KADRAGVLAGHDNRVSCLGVTDDGMAVA 339
Query: 125 VGNRDDELTI 134
G+ D L I
Sbjct: 340 TGSWDSFLKI 349
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
++G+ C +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
+ SV ++ LL DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 25/219 (11%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
V + A+ +G +A G +D +++++ EL GH + C + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQI 157
Query: 83 ATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
T+SGD T LWD +G+ + +G+ ++++ PD G D + DVR+
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-- 215
Query: 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI-- 199
+ R+ F ++I NA C+ P G FA GS D+ L+D+
Sbjct: 216 GMCRQTFTGHESDI--------------NAICFF----PNGNAFATGSDDATCRLFDLRA 257
Query: 200 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 238
+ L + + + ++SFS +G + + +D ++
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQL 72
+ +TGH+ ++++ + G A+GS D T R++ + D EL ++ D++ +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-------DQELMTYSHDNI--I 270
Query: 73 CWD-----PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGTHIA 124
C K L+ D +WDA K + L+G + ++ DG +A
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDAL--KADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 125 VGNRDDELTI 134
G+ D L I
Sbjct: 329 TGSWDSFLKI 338
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
++G+ C +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
+ SV ++ LL DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 25/219 (11%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
V + A+ +G +A G +D +++++ EL GH + C + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQI 157
Query: 83 ATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
T+SGD T LWD +G+ + +G+ ++++ PD G D + DVR+
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-- 215
Query: 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI-- 199
+ R+ F ++I NA C+ P G FA GS D+ L+D+
Sbjct: 216 GMCRQTFTGHESDI--------------NAICFF----PNGNAFATGSDDATCRLFDLRA 257
Query: 200 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 238
+ L + + + ++SFS +G + + +D ++
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQL 72
+ +TGH+ ++++ + G A+GS D T R++ + D EL ++ D++ +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-------DQELMTYSHDNI--I 270
Query: 73 CWD-----PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGTHIA 124
C K L+ D +WDA K + L+G + ++ DG +A
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDAL--KADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 125 VGNRDDELTI 134
G+ D L I
Sbjct: 329 TGSWDSFLKI 338
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSV 69
+ +R + GH K V SVA++ ++ S S D+T ++W+ G K E GH D V
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT--LGECKYTISEGGEGHRDWV 520
Query: 70 DQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAV 125
+ + P I +AS DKTV++W+ + C ++ L+G + PDG+ A
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 126 GNRDDELTILDVRKFKPIH 144
G +D + + D+ + K ++
Sbjct: 579 GGKDGVVLLWDLAEGKKLY 597
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 35/236 (14%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLW----DARSGKCSQQAELSGEN---INI 114
+R H D V + +AD+I +AS DK++ LW D ++ +Q+ L+G + ++
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR-RLTGHSHFVEDV 436
Query: 115 TYKPDGTHIAVGNRDDELTILDV------RKF----KPIHRRKFGYEVNEIA-------- 156
DG G+ D EL + D+ R+F K + F + +I
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 157 --WNMTGE-MFFLTTGNAG----CYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRT 207
WN GE + ++ G G C+ P + SA D V +W++S T
Sbjct: 497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST 556
Query: 208 FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 263
V T++ S G AS +D + + ++ G+ ++ + + ++++ ++P
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP 612
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 37/197 (18%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R TGH V V + G SGS D R+W + V GH V +
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA----AGVSTRRFVGHTKDVLSVA 479
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
+ + ++ +AS D+T++LW+ G+C GE G+RD
Sbjct: 480 FSLDNRQIV-SASRDRTIKLWNTL-GECKYTISEGGE---------------GHRD---- 518
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT--------TGNAG-CYCIAIDPMGRY 184
+ +F P + +W+ T +++ L+ G+ G +A+ P G
Sbjct: 519 WVSCVRFSP---NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575
Query: 185 FAVGSADSLVSLWDISE 201
A G D +V LWD++E
Sbjct: 576 CASGGKDGVVLLWDLAE 592
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
++G+ C +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
+ SV ++ LL DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 25/219 (11%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
V + A+ +G +A G +D +++++ EL GH + C + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQI 157
Query: 83 ATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
T+SGD T LWD +G+ + +G+ ++++ PD G D + DVR+
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-- 215
Query: 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI-- 199
+ R+ F ++I NA C+ P G FA GS D+ L+D+
Sbjct: 216 GMCRQTFTGHESDI--------------NAICFF----PNGNAFATGSDDATCRLFDLRA 257
Query: 200 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 238
+ L + + + ++SFS +G + + +D ++
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQL 72
+ +TGH+ ++++ + G A+GS D T R++ + D EL ++ D++ +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-------DQELMTYSHDNI--I 270
Query: 73 CWD-----PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGTHIA 124
C K L+ D +WDA K + L+G + ++ DG +A
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDAL--KADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 125 VGNRDDELTI 134
G+ D L I
Sbjct: 329 TGSWDSFLKI 338
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 106/261 (40%), Gaps = 35/261 (13%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNAGC---------------------YCIAIDPMGRYFAVGSADSLVSLWDIS 200
++G+ C +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV-----HQIPCRAA 255
E +C +TFT E + I F G+ A+ S+D + ++ + + I C
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--G 272
Query: 256 MNSVEWNPKYNLLAYAGDDKN 276
+ SV ++ LL DD N
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFN 293
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 25/219 (11%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
V + A+ +G +A G +D +++++ EL GH + C + I
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQI 157
Query: 83 ATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
T+SGD T LWD +G+ + +G+ ++++ PD G D + DVR+
Sbjct: 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-- 215
Query: 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI-- 199
+ R+ F ++I NA C+ P G FA GS D+ L+D+
Sbjct: 216 GMCRQTFTGHESDI--------------NAICFF----PNGNAFATGSDDATCRLFDLRA 257
Query: 200 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 238
+ L + + + ++SFS +G + + +D ++
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQL 72
+ +TGH+ ++++ + G A+GS D T R++ + D EL ++ D++ +
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-------DQELMTYSHDNI--I 270
Query: 73 CWD-----PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPDGTHIA 124
C K L+ D +WDA K + L+G + ++ DG +A
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDAL--KADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 125 VGNRDDELTI 134
G+ D L I
Sbjct: 329 TGSWDSFLKI 338
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 14/205 (6%)
Query: 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
++L GH V L + H ++ + S D+TVR+WD + G C+ E G N ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172
+ +I G+RD+ L + + K P H + Y + + +F+
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--VFHTPEENPYFVGVLRGH 269
Query: 173 CYCI-AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
+ + G GS D+ + +WD+++M C+ + + + + H SAS
Sbjct: 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 232 EDLFIDISNVHTGRTVHQIPCRAAM 256
D I I ++ G ++ + A+
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTAL 354
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
+GH +++S ++ + S S+D T R+W +E +G++ L+GH V L
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE---NGELM-YTLQGHTALVGLLRLSD 362
Query: 77 KHADLIATASGDKTVRLWDAR--SGKCS-QQAELSGENINITYKPDGTHIAVGNRDDELT 133
K + +A+ D ++R WDA S K S LS I Y D +I V +++
Sbjct: 363 K---FLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSD--NILVSGSENQFN 415
Query: 134 ILDVRKFKPIH 144
I ++R K +H
Sbjct: 416 IYNLRSGKLVH 426
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V +V+ + G + SGS D T VW + + L GH D + +D +
Sbjct: 268 GHMASVRTVSGH--GNIVVSGSYDNTLIVWDVAQMKCLYI----LSGHTDRIYSTIYDHE 321
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
I+ AS D T+R+WD +G+
Sbjct: 322 RKRCIS-ASMDTTIRIWDLENGEL 344
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 106/279 (37%), Gaps = 54/279 (19%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL-C 73
+ +GH V ++ + G L SGS D+T RVW I+ V GH +V L
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHV----FEGHNSTVRCLDI 211
Query: 74 WDPKHADLIATASGDKTVRLWD-ARSGKCSQQAE--------------------LSGENI 112
+ K+ I T S D T+ +W + E L G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271
Query: 113 NI-TYKPDGTHIAVGNRDDELTILDVRKFKPI----------------HRRK----FGYE 151
++ T G + G+ D+ L + DV + K + H RK +
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331
Query: 152 VNEIAWNM-TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 210
W++ GE+ + G+ + + ++ +AD + WD ++ R F+
Sbjct: 332 TTIRIWDLENGELMYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWDANDY--SRKFSY 388
Query: 211 LEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRTVH 248
+ I+ + D I S SE+ F +I N+ +G+ VH
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVH 426
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 26/232 (11%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G +LA+ S D+T +++ +E H + L GH V ++ W P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
+++++ ++ PI VN +W T G + + R F G
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 176
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
AD+LV +W D + T VR +++S T Y+AS S+D
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 26/232 (11%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G +LA+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 66
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
+++++ ++ PI VN +W T G + + R F G
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 178
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
AD+LV +W D + T VR +++S T Y+AS S+D
Sbjct: 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233
Query: 92 RLW 94
+W
Sbjct: 234 IIW 236
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 26/232 (11%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G ++A+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
+++++ ++ PI VN +W T G + + R F G
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 176
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
AD+LV +W D + T VR +++S T Y+AS S+D
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH +V +AW G +LASG D ++W + H +V + W P
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIW----DARSSIPKFTKTNHNAAVKAVAWCPW 270
Query: 78 HADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV--GNRDDELT 133
++L+AT G DK + W+A +G + + ++ + P I G D+ L+
Sbjct: 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330
Query: 134 I 134
I
Sbjct: 331 I 331
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 12/145 (8%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
T V SV W+ G+ L+ G + ++ +E + K + GH V L W+
Sbjct: 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE----SQTKLRTMAGHQARVGCLSWN- 185
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELT 133
+H ++++ S + D R Q L G E + ++ DG +A G D+ +
Sbjct: 186 RH--VLSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242
Query: 134 ILDVRKFKP-IHRRKFGYEVNEIAW 157
I D R P + V +AW
Sbjct: 243 IWDARSSIPKFTKTNHNAAVKAVAW 267
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 26/232 (11%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G +LA+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
+++++ ++ PI VN +W T G + + R F G
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 176
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
AD+LV +W D + T VR +++S T Y+AS S+D
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 44/258 (17%)
Query: 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
NL H V+ ++ G ++AS D+T +V+ E G+ K +E++ H D V
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAET---GE-KLLEIKAHEDEV 666
Query: 70 DQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH---IAV 125
LC D IAT S DK V++W++ +G+ + E +N + + +H +A
Sbjct: 667 --LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLAT 724
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185
G+ D L + D+ + K FG+ N+ +C P +
Sbjct: 725 GSSDCFLKLWDLNQ-KECRNTMFGH------------------TNSVNHC-RFSPDDKLL 764
Query: 186 AVGSADSLVSLWDIS------EMLCVRTFTKLEWP-------VRTISFSHTGDYIASASE 232
A SAD + LWD + + + F LE P V+ S+S G I A++
Sbjct: 765 ASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAK 824
Query: 233 DLFIDISNVHTGRTVHQI 250
+ I + ++HT + +I
Sbjct: 825 NK-IFLFDIHTSGLLGEI 841
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/186 (19%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 55 GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI 114
+ K + RGH V + + P + + T+S D+T+RLW+ + C A + + +++
Sbjct: 877 SRSKVADCRGHLSWVHGVMFSPDGSSFL-TSSDDQTIRLWETKK-VCKNSAVMLKQEVDV 934
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174
++ + + L + +R+ + I+ R TG++ +LT C
Sbjct: 935 VFQENEVMV--------LAVDHIRRLQLINGR-------------TGQIDYLTEAQVSCC 973
Query: 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 234
C++ P +Y A G + + + ++ ++ + + V I F+ + S+S+D
Sbjct: 974 CLS--PHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDA 1031
Query: 235 FIDISN 240
I + N
Sbjct: 1032 EIQVWN 1037
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 28/123 (22%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-------A 66
+++ H+ V S + TK +S S D+TA++W + + ELRGH A
Sbjct: 1085 KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL----LLPLHELRGHNGCVRCSA 1140
Query: 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-AELSGEN--------INITYK 117
SVD + L+AT + +R+W+ +G+ A LS E ++ +
Sbjct: 1141 FSVD--------STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFS 1192
Query: 118 PDG 120
PDG
Sbjct: 1193 PDG 1195
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH VH V ++ G+ + S DQT R+W E K + L+ D V Q +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLW--ETKKVCKNSAVMLKQEVDVVFQ-----E 938
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137
+ ++ + ++L + R+G+ E ++ P +IA G+ + + IL++
Sbjct: 939 NEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLS--PHLQYIAFGDENGAIEILEL 996
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 40/189 (21%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
HKK V + + L S S D +VW+ + K I LRGH ++V K+
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD-----KCIFLRGHQETVKDFRL-LKN 1061
Query: 79 ADLIATASGDKTVRLWDARSGK------CSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
+ L+ + S D TV++W+ +G C Q LS +I++ D T + + D
Sbjct: 1062 SRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLS---CDISH--DATKFSSTSADKTA 1115
Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY-CIAIDPMGRYFAVGSAD 191
I P+H + G+ GC C A A G +
Sbjct: 1116 KIWSFDLLLPLHELR---------------------GHNGCVRCSAFSVDSTLLATGDDN 1154
Query: 192 SLVSLWDIS 200
+ +W++S
Sbjct: 1155 GEIRIWNVS 1163
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 18 GHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQLC 73
GH V +AW +ASGS D T VW I G + I L GH V +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRDD 130
W P +++ +A D + +WD +G + ++ + I ++ + DG I RD
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 131 ELTILDVRK 139
+ +++ RK
Sbjct: 199 RVRVIEPRK 207
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 18 GHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQL 72
GH V +AW C +ASGS D T VW I G + I L GH V +
Sbjct: 79 GHTAPVLDIAW-CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRD 129
W P +++ +A D + +WD +G + ++ + I ++ + DG I RD
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 130 DELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTG 169
+ +++ RK + + +E + E LTTG
Sbjct: 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 157 WNMTGEMFFLTTGNAGC-YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV 215
+++ GE G+ G + I +D +Y GSAD + LWD+S CV T+ K PV
Sbjct: 60 YSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW-KSPVPV 118
Query: 216 RTISFSHTGDYIASASEDLF-----IDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAY 270
+ + FS G+Y + +++ I+I + H+ + V P + ++ +
Sbjct: 119 KRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHE------LTKVSEEPIHKIITH 172
Query: 271 AGDD 274
G D
Sbjct: 173 EGLD 176
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 107/286 (37%), Gaps = 34/286 (11%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWH-IEPHGHGKVKDIELRGHAD---SVDQL 72
TGH++ + V +N G L S S D +A VW+ + G L GH S+D
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----LDGHTGTIWSIDVD 83
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
C+ T S D +++LWD +G+C + + + P G + L
Sbjct: 84 CF----TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF--------L 131
Query: 133 TILDVRKFKP-------IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185
ILD P I R +E+ +++ ++ G G+Y
Sbjct: 132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYI 190
Query: 186 AVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244
G D +S +D+S V + E + + FS Y ++S D + +V T
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250
Query: 245 RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK----YQADEGVFR 286
+ + + +N+ P + G + K A+EG F
Sbjct: 251 QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE 296
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 14/205 (6%)
Query: 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
++L GH V L + H ++ + S D+TVR+WD + G C+ E G N ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172
+ +I G+RD+ L + + K P H + Y + + +F+
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL--VFHTPEENPYFVGVLRGH 269
Query: 173 CYCI-AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
+ + G GS D+ + +WD+++ C+ + + + + H SAS
Sbjct: 270 XASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 232 EDLFIDISNVHTGRTVHQIPCRAAM 256
D I I ++ G + + A+
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTAL 354
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
+GH +++S ++ + S S D T R+W +E +G++ L+GH V L
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE---NGELX-YTLQGHTALVGLLRLSD 362
Query: 77 KHADLIATASGDKTVRLWDAR--SGKCS-QQAELSGENINITYKPDGTHIAVGNRDDELT 133
K + +A+ D ++R WDA S K S LS I Y D +I V +++
Sbjct: 363 K---FLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSD--NILVSGSENQFN 415
Query: 134 ILDVRKFKPIH 144
I ++R K +H
Sbjct: 416 IYNLRSGKLVH 426
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V +V+ + G + SGS D T VW + K I L GH D + +D +
Sbjct: 268 GHXASVRTVSGH--GNIVVSGSYDNTLIVWDV---AQXKCLYI-LSGHTDRIYSTIYDHE 321
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
I+ AS D T+R+WD +G+
Sbjct: 322 RKRCIS-ASXDTTIRIWDLENGEL 344
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 106/279 (37%), Gaps = 54/279 (19%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL-C 73
+ +GH V ++ + G L SGS D+T RVW I+ V GH +V L
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHV----FEGHNSTVRCLDI 211
Query: 74 WDPKHADLIATASGDKTVRLWD-ARSGKCSQQAE--------------------LSGENI 112
+ K+ I T S D T+ +W + E L G
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXA 271
Query: 113 NI-TYKPDGTHIAVGNRDDELTILDVRKFKPI----------------HRRK----FGYE 151
++ T G + G+ D+ L + DV + K + H RK +
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXD 331
Query: 152 VNEIAWNM-TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 210
W++ GE+ + G+ + + ++ +AD + WD ++ R F+
Sbjct: 332 TTIRIWDLENGELXYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWDANDY--SRKFSY 388
Query: 211 LEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRTVH 248
+ I+ + D I S SE+ F +I N+ +G+ VH
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVH 426
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + H V+ L
Sbjct: 227 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 284
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K + S E + + P + T +A D
Sbjct: 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVG- 188
L + D+ K + E A + E+ F+ G+ A + +P +
Sbjct: 345 RLHVWDLSKIG-------EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397
Query: 189 SADSLVSLWDISE 201
S D+++ +W ++E
Sbjct: 398 SEDNIMQVWQMAE 410
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 39/220 (17%)
Query: 32 GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
TK S V D T EP G + D+ LRGH L W+P + +AS D
Sbjct: 145 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203
Query: 89 KTVRLWDARSGKCSQQAELSGENINITYKP----DGTHIAVGNRDDELTILDVRKFKPIH 144
T+ LWD IN T K D +I G+ +++ + +H
Sbjct: 204 HTICLWD----------------INATPKEHRVIDAKNIFTGHT----AVVEDVAWHLLH 243
Query: 145 RRKFGYEVNE---IAW-----NMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGSADSLVS 195
FG ++ + W N + + A C++ +P + A GSAD V+
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 196 LWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYIASASED 233
LWD+ + L + +F + + + +S H +AS+ D
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE------- 61
LHS + HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 314 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 371
Query: 62 --LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + H V+ L
Sbjct: 229 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 286
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K + S E + + P + T +A D
Sbjct: 287 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 346
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVG- 188
L + D+ K + E A + E+ F+ G+ A + +P +
Sbjct: 347 RLHVWDLSKIG-------EEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 399
Query: 189 SADSLVSLWDISE 201
S D+++ +W ++E
Sbjct: 400 SEDNIMQVWQMAE 412
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 39/220 (17%)
Query: 32 GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
TK S V D T EP G + D+ LRGH L W+P + +AS D
Sbjct: 147 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 205
Query: 89 KTVRLWDARSGKCSQQAELSGENINITYKP----DGTHIAVGNRDDELTILDVRKFKPIH 144
T+ LWD IN T K D +I G+ +++ + +H
Sbjct: 206 HTICLWD----------------INATPKEHRVIDAKNIFTGHT----AVVEDVAWHLLH 245
Query: 145 RRKFGYEVNE---IAW-----NMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGSADSLVS 195
FG ++ + W N + + A C++ +P + A GSAD V+
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 196 LWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYIASASED 233
LWD+ + L + +F + + + +S H +AS+ D
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE------- 61
LHS + HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 316 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 373
Query: 62 --LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 374 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 34/218 (15%)
Query: 62 LRGHADSVDQLCWD-PKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPD 119
L+GH + V LC D K I ++S D V +WD+ + + + Y P
Sbjct: 60 LKGHGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 120 GTHIAVGNRDDELTI----LDVRKFKPIHRRKFGYEVNEI-AWNMT-GEMFFLT-TGNAG 172
G IA G D++ ++ D + ++ N + A + T +M LT +G+
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 173 C---------------------YCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFT 209
C C+ + P G F G D +WD+ CV+ F
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 210 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
E V ++ + +GD AS S+D + ++ R V
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 30/233 (12%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHI--EPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
V + A+ +G +A G +D V+ + + + + K + H + + + ++D
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF--TNSD 166
Query: 81 L-IATASGDKTVRLWDARSGKCSQQAELSGENI---NITYKPDGTHIAVGNRDDELTILD 136
+ I TASGD T LWD SG+ Q G ++ ++ G G D + + D
Sbjct: 167 MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSL 196
+R + + +E +E N + P G FA GS D+ L
Sbjct: 227 MRSGQCVQ----AFETHESDVNS----------------VRYYPSGDAFASGSDDATCRL 266
Query: 197 WDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
+D+ V ++K + + ++ FS +G + + D I++ +V G V
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
GH+ +V ++ + GT SGS D T RVW
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + H V+ L
Sbjct: 231 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 288
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K + S E + + P + T +A D
Sbjct: 289 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 348
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVG- 188
L + D+ K + E A + E+ F+ G+ A + +P +
Sbjct: 349 RLHVWDLSKIGE-------EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 401
Query: 189 SADSLVSLWDISE 201
S D+++ +W ++E
Sbjct: 402 SEDNIMQVWQMAE 414
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 39/220 (17%)
Query: 32 GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
TK S V D T EP G + D+ LRGH L W+P + +AS D
Sbjct: 149 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 207
Query: 89 KTVRLWDARSGKCSQQAELSGENINITYKP----DGTHIAVGNRDDELTILDVRKFKPIH 144
T+ LWD IN T K D +I G+ +++ + +H
Sbjct: 208 HTICLWD----------------INATPKEHRVIDAKNIFTGHT----AVVEDVAWHLLH 247
Query: 145 RRKFGYEVNE---IAW-----NMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGSADSLVS 195
FG ++ + W N + + A C++ +P + A GSAD V+
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 196 LWDISEM-LCVRTFTKLEWPVRTISFS-HTGDYIASASED 233
LWD+ + L + +F + + + +S H +AS+ D
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE------- 61
LHS + HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 318 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 375
Query: 62 --LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 376 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 26/232 (11%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G + A+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188
+++++ ++ PI VN +W T G + + R F G
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA------TIEEDGEHNGTKE--SRKFVTG 176
Query: 189 SADSLVSLW----DISEMLCVRTFTKLEWPVRTISFSHT---GDYIASASED 233
AD+LV +W D + T VR +++S T Y AS S+D
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQD 228
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 89/236 (37%), Gaps = 33/236 (13%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
+ +H R T K V+ + ++ K+ SG D T ++W ++ L GH
Sbjct: 123 LQRIHCRSETS--KGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRI----LTGHTG 174
Query: 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGK--------CSQQAELSGENINITYKPD 119
SV L +D + +I T S D TVR+WD +G+ C L N +
Sbjct: 175 SVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231
Query: 120 GTHIAVGNRDDELTILDVRKFKPIHRRKFG-------YEVNEI------AWNMTGEMFFL 166
IAV + T + +R+ HR Y V+ WN + F
Sbjct: 232 DRSIAVWDMASP-TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH 222
T + R GS+D+ + LWDI C+R E VR I F +
Sbjct: 291 TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 346
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R GH+ V+ V ++ + S S D+T +VW+ + L GH + L
Sbjct: 250 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRT----LNGHKRGIACLQ 303
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
+ + L+ + S D T+RLWD G C + E E + + D I G D ++
Sbjct: 304 YRDR---LVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIK 359
Query: 134 ILDV 137
+ D+
Sbjct: 360 VWDL 363
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 160 TGEMFFLTTGNAG-CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI 218
T E + TG+ G C+ D R GS+DS V +WD++ + T V +
Sbjct: 162 TLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219
Query: 219 SFSHTGDYIASASEDLFIDISNVH--TGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGD 273
F++ + + S+D I + ++ T T+ ++ RAA+N V+++ KY +++ +GD
Sbjct: 220 RFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY-IVSASGD 275
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
G YC+ D + G D+ + +WD + + C R T V + + I + S
Sbjct: 135 GVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGS 190
Query: 232 EDLFIDISNVHTGRTVHQIP--CRAAMN 257
D + + +V+TG ++ + C A ++
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLH 218
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL----R 63
F + + T HKK + SVAW + LA+GS D T +W E + +++L
Sbjct: 46 FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIE 104
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDA-RSGK----CSQQAELSGENINITYKP 118
GH + V + W +AT S DK+V +W+ SG+ S E S + ++ + P
Sbjct: 105 GHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP 163
Query: 119 DGTHIAVGNRDDELTI 134
+A + DD + I
Sbjct: 164 SEALLASSSYDDTVRI 179
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 20/171 (11%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H + V V W+ + LAS S D T R+W V L GH +V +D
Sbjct: 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA--VLNGHEGTVWSSDFDKTE 209
Query: 79 ADL-IATASGDKTVRLWDARSGKCSQQAELSGENI----------NITYKPDGTHIAVGN 127
+ + S D TVR+W Q E E I N+ + +G +VG
Sbjct: 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVG- 268
Query: 128 RDDELTILDVR--KFKPIHRRKFG---YEVNEIAW-NMTGEMFFLTTGNAG 172
D L + + ++K +R YE+N + W + G+ T G+ G
Sbjct: 269 ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D+ ++ ++ + ++ H ++ + W P H L+A S D TV +W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIW 85
Query: 95 DARSGKCSQQAEL---------SGENINITYKPDGTHIAVGNRDDELTI 134
A+ + E+ E + + DG ++A +RD + I
Sbjct: 86 -AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI 133
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
+GH VH V ++ G +A+ S DQ +V+ ++ R H S+ + W
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 76 PKHADLIATASGDKTVRLW--DARSGKCSQQA--------ELSGENINITYKPD--GTHI 123
P++ +IA+AS DKTV+LW D +CS + + G ++ + P G +
Sbjct: 66 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 125
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171
A D L + D +P R +W +T EM L+ A
Sbjct: 126 ACLGNDGILRLYDA--LEPSDLR---------SWTLTSEMKVLSIPPA 162
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
E+ H +V SV+WN TGT L+S D R+W
Sbjct: 299 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 28/207 (13%)
Query: 7 PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH-IEPHGHGKVKDIELR-- 63
PFK + H K VHSV +N G+ AS D T +++ ++ G +D L+
Sbjct: 179 PFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 123
H+ SV L W P IA+AS DKT+++W+ + K + P GT I
Sbjct: 237 AHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTI------------PVGTRI 283
Query: 124 AVGNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NAGCYCIAIDPM 181
D +L I+ ++ I F VN G + + G N ++
Sbjct: 284 ----EDQQLGIIWTKQALVSISANGFINFVNP----ELGSIDQVRYGHNKAITALSSSAD 335
Query: 182 GRYFAVGSADSLVSLWDISEMLCVRTF 208
G+ A+ ++ WDIS + R F
Sbjct: 336 GKTLFSADAEGHINSWDISTGISNRVF 362
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHI-EPHGHGKVKDIELRG-H 65
F+ H+ +T H KV V+W+ +LA+GS+D + VW++ +P H I ++G H
Sbjct: 524 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH----PIIIKGAH 579
Query: 66 A-DSVDQLCWDPKHADLIATASGDKTVRLWD 95
A SV+ + W + I +A D ++ W+
Sbjct: 580 AMSSVNSVIW--LNETTIVSAGQDSNIKFWN 608
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 98/256 (38%), Gaps = 27/256 (10%)
Query: 5 SIPFKNLHSRE-YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR 63
++P +L E YT H + + +G ASG V R+W H + +
Sbjct: 43 TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH--ILKTTIP 100
Query: 64 GHADSVDQLCWDPKHADLIATASGDKT---VRLWDARSGKCSQQAELSGENINITYKPDG 120
+ V + WD + + A G + V L+D + + + N ++ +KP
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN-SVDFKPSR 159
Query: 121 T-HIAVGNRDDELTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTGNAGCYCI 176
I G+ D+ + I + FK + FG V+ + +N G + F +TG G +
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSL-FASTGGDGTIVL 216
Query: 177 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI 236
G V DSL ++ + L W S G IASAS D I
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVF------GLTW-------SPDGTKIASASADKTI 263
Query: 237 DISNVHTGRTVHQIPC 252
I NV T + IP
Sbjct: 264 KIWNVATLKVEKTIPV 279
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 180 PMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLEWPVRTISFSHTGDYIASASE--DLF 235
P G Y A G V +WD ++ + T PV+ IS+ IA+ E + F
Sbjct: 69 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128
Query: 236 IDISNVHTGRTVHQIPCRA-AMNSVEWNPKYNLLAYAGDDKNKYQADEG 283
+ TG + + +A AMNSV++ P +G D N EG
Sbjct: 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
+GH VH V ++ G +A+ S DQ +V+ ++ R H S+ + W
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76 PKHADLIATASGDKTVRLW--DARSGKCSQQA--------ELSGENINITYKPD--GTHI 123
P++ +IA+AS DKTV+LW D +CS + + G ++ + P G +
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171
A D L + D +P R +W +T EM L+ A
Sbjct: 128 ACLGNDGILRLYDA--LEPSDLR---------SWTLTSEMKVLSIPPA 164
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
E+ H +V SV+WN TGT L+S D R+W
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH + + +N T L S S D T R+WH G+G ++ GH+ S+ W
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNC-FYGHSQSIVSASW--V 298
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILD 136
D + + S D +VRLW + + + G I DG AV D ++ + D
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Query: 137 VRKFKPIHRRKFG 149
++K R +G
Sbjct: 359 LKKLNSKSRSLYG 371
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
+GH VH V ++ G +A+ S DQ +V+ ++ R H S+ + W
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
P++ +IA+AS DKTV+LW+ Q E SG N
Sbjct: 68 PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 101
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
E+ H +V SV+WN TGT L+S D R+W
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
G L +GS R W ++ G K ++ H V +CW + TAS DKT
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--HTGPVLDVCWS-DDGSKVFTASCDKTA 110
Query: 92 RLWDARSGKCSQ--QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI 143
++WD S + Q Q + + I+ P+ + + G+ D L D R P+
Sbjct: 111 KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPK 77
H V V W+ G+K+ + S D+TA++W + + + I++ H V + W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-----QAIQIAQHDAPVKTIHWIKAP 139
Query: 78 HADLIATASGDKTVRLWDARS 98
+ + T S DKT++ WD RS
Sbjct: 140 NYSCVMTGSWDKTLKFWDTRS 160
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
IA P+ A +D S WD ++T +L+ P+ F+H G+ A AS
Sbjct: 279 IAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
HKKKV VA N C LA+ SVDQT ++W + GK + H V+ C+ P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
A L+ T + +R++ A C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INIT-YK 117
LR H V + +P +ATAS D+TV++WD R GK S L + +N +
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
Query: 118 PDGTHIAVGNRDDELTI 134
PDG + ++ E+ +
Sbjct: 306 PDGARLLTTDQKSEIRV 322
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
HKKKV VA N C LA+ SVDQT ++W + GK + H V+ C+ P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
A L+ T + +R++ A C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INIT-YK 117
LR H V + +P +ATAS D+TV++WD R GK S L + +N +
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 305
Query: 118 PDGTHIAVGNRDDELTI 134
PDG + ++ E+ +
Sbjct: 306 PDGARLLTTDQKSEIRV 322
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
HKKKV VA N C LA+ SVDQT ++W + GK + H V+ C+ P
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 308
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
A L+ T + +R++ A C
Sbjct: 309 GARLLTTDQKSE-IRVYSASQWDC 331
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INIT-YK 117
LR H V + +P +ATAS D+TV++WD R GK S L + +N +
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS 306
Query: 118 PDGTHIAVGNRDDELTI 134
PDG + ++ E+ +
Sbjct: 307 PDGARLLTTDQKSEIRV 323
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR------------SGKCSQQAELS- 108
L+GH + + W P++ ++ATAS D V+LWD R +GK SQ E +
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 109 ----GENINITYKPDGTHIAVGNRDDELTI 134
G+ + + DG H+ D+ + +
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH-- 122
H SV+ + W P + ++S DKT+++WD + + + + P T
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 123 -IAVGNRDDELTILDVRKFKPIH-RRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180
+AVG R ++ + D++ H + E+ ++W+ P
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS---------------------P 196
Query: 181 MGRY-FAVGSADSLVSLWDI 199
Y A SADS V LWD+
Sbjct: 197 RYDYILATASADSRVKLWDV 216
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 35/195 (17%)
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD----ARSGKCSQQAELSGENINI 114
D+ LRGH L W+P + + +AS D T+ LWD + GK
Sbjct: 170 DLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVV------------ 217
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE---IAW-----NMTGEMFFL 166
D I G+ +++ + +H FG ++ + W N + +
Sbjct: 218 ----DAKTIFTGHT----AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSV 269
Query: 167 TTGNAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFS-HT 223
A C++ +P + A GSAD V+LWD+ + L + +F + + + +S H
Sbjct: 270 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN 329
Query: 224 GDYIASASEDLFIDI 238
+AS+ D +++
Sbjct: 330 ETILASSGTDRRLNV 344
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 19 HKKKVHSVAWNCTGTK------LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
H H+ NC LA+GS D+T +W + + K+K H D + Q+
Sbjct: 267 HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHSFESHKDEIFQV 323
Query: 73 CWDPKHADLIATASGDKTVRLWD 95
W P + ++A++ D+ + +WD
Sbjct: 324 QWSPHNETILASSGTDRRLNVWD 346
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKD------IELR 63
LHS + HK ++ V W+ T LAS D+ VW + G + + EL
Sbjct: 310 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELL 367
Query: 64 ----GHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
E T +++A + S D VW + H + + +GH D C
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL----HNQTLVRQFQGHTDGAS--CI 189
Query: 75 DPKH-ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
D + + T D TVR WD R G+ QQ + + + ++ Y P G +AVG +
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249
Query: 134 ILDVRK 139
+L V K
Sbjct: 250 VLHVNK 255
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 24/196 (12%)
Query: 87 GDKTVRLWD----ARSGKCSQQAELSGENINITYK--PDGTHIAVGNRDDELTILDVRKF 140
G V++WD SQ L+ +N + K PDG + VG L+I D+
Sbjct: 70 GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129
Query: 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 200
P + + LT+ CY +AI P + +D +++WD+
Sbjct: 130 TPRIKAE------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 201 EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVE 260
VR F I S+ G + + D + ++ GR + Q + + S+
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG 231
Query: 261 WNPKYNLLAYAGDDKN 276
+ P LA + N
Sbjct: 232 YCPTGEWLAVGMESSN 247
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H V +V+ +GT+ SGS D +VW + +V R HA V + P
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA----QQVVLSSYRAHAAQVTCVAASPHK 181
Query: 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAV-GNRDDELTI 134
+ + S D + LWD R K + Q S ++ + P + + V G+ + +++
Sbjct: 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL 241
Query: 135 LDVRK 139
+D +
Sbjct: 242 VDTKS 246
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITY-----KPDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVR 138
D + I D +
Sbjct: 207 DLTIKIWDYQ 216
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
V LW+ + VR+ E PVR F ++I S+D I + N +TG V
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 27/192 (14%)
Query: 58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN--INIT 115
K ++ H D + + P + + S D TV+LW+ + +Q E+ + +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 116 YKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GC 173
+ P D + A G D + + + + P F LTTG G
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--------------------NFTLTTGQERGV 187
Query: 174 YCIAIDPM--GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
+ P+ Y S D + +WD CV T V F T I S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 232 EDLFIDISNVHT 243
ED + I N T
Sbjct: 248 EDGTLKIWNSST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITY-----KPDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVR 138
D + I D +
Sbjct: 207 DLTIKIWDYQ 216
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
V LW+ + VR+ E PVR F ++I S+D I + N +TG V
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 27/192 (14%)
Query: 58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN--INIT 115
K ++ H D + + P + + S D TV+LW+ + +Q E+ + +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 116 YKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GC 173
+ P D + A G D + + + + P F LTTG G
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--------------------NFTLTTGQERGV 187
Query: 174 YCIAIDPM--GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
+ P+ Y S D + +WD CV T V F T I S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 232 EDLFIDISNVHT 243
ED + I N T
Sbjct: 248 EDGTLKIWNSST 259
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITY-----KPDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVR 138
D + I D +
Sbjct: 207 DLTIKIWDYQ 216
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
V LW+ + VR+ E PVR F ++I S+D I + N +TG V
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 27/192 (14%)
Query: 58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN--INIT 115
K ++ H D + + P + + S D TV+LW+ + +Q E+ + +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 116 YKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GC 173
+ P D + A G D + + + + P F LTTG G
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--------------------NFTLTTGQERGV 187
Query: 174 YCIAIDPM--GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
+ P+ Y S D + +WD CV T V F T I S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 232 EDLFIDISNVHT 243
ED + I N T
Sbjct: 248 EDGTLKIWNSST 259
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITY-----KPDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVR 138
D + I D +
Sbjct: 207 DLTIKIWDYQ 216
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247
V +W+ + VR+ E PVR F ++I S+D I + N +TG V
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV 90
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 27/192 (14%)
Query: 58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN--INIT 115
K ++ H D + + P + + S D TV+LW+ + +Q E+ + +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 116 YKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-GC 173
+ P D + A G D + + + + P F LTTG G
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTP--------------------NFTLTTGQERGV 187
Query: 174 YCIAIDPM--GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231
+ P+ Y S D + +WD CV T V F T I S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 232 EDLFIDISNVHT 243
ED + I N T
Sbjct: 248 EDGTLKIWNSST 259
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
NL H ++ + + +G L S S D ++W ++ + + L GH +V
Sbjct: 126 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT----LIGHRATV 181
Query: 70 DQLCWDPKHADLIATASGDKTVRLWDARSG 99
+ + ++++ AS D T+RLW+ +G
Sbjct: 182 TDIAIIDRGRNVLS-ASLDGTIRLWECGTG 210
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
NL H ++ + + +G L S S D ++W ++ + + L GH +V
Sbjct: 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT----LIGHRATV 184
Query: 70 DQLCWDPKHADLIATASGDKTVRLWDARSG 99
+ + ++++ AS D T+RLW+ +G
Sbjct: 185 TDIAIIDRGRNVLS-ASLDGTIRLWECGTG 213
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 83/222 (37%), Gaps = 40/222 (18%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH+ V S+++ + SGS D+TA+VW G + L+ H SV WD K
Sbjct: 102 GHQGNVCSLSFQ--DGVVISGSWDKTAKVWK-----EGSLV-YNLQAHNASV----WDAK 149
Query: 78 HADL----IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
TAS DKT++LW +N + G H V L
Sbjct: 150 VVSFSENKFLTASADKTIKLW---------------QNDKVIKTFSGIHNDVVRH---LA 191
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG-CYCIAIDPMGRYFAVGSADS 192
++D F V+ TG++ G+ YCI + P G + G D
Sbjct: 192 VVDDGHFISCSNDGLIKLVDX----HTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DR 246
Query: 193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 234
V +W + T + ++ GD I +S++L
Sbjct: 247 TVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNL 288
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H+R ++ H K V V W ++ + S D+ A V+ P G K + LR + +
Sbjct: 47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN-RAATF 105
Query: 72 LCWDPKHADLIATASGDKTVRL 93
+ W P D A SG + + +
Sbjct: 106 VRWSPNE-DKFAVGSGARVISV 126
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INITY--KPD 119
H V ++P+ L+AT+S D TV+LWD R+ K S AE+ E +N Y D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 120 GTHIAVGNRDDELTI 134
T + ++ +E+ +
Sbjct: 262 STKLLTTDQRNEIRV 276
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INITY--KPD 119
H V ++P+ L+AT+S D TV+LWD R+ K S AE+ E +N Y D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 120 GTHIAVGNRDDELTI 134
T + ++ +E+ +
Sbjct: 263 STKLLTTDQRNEIRV 277
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD--PKHAD 80
+H+V + T L S+ Q ++W G+ + + L G D V C D P
Sbjct: 194 LHAVTFLRTPEILTVNSIGQ-LKIWDFRQQGNEPSQILSLTG--DRVPLHCVDRHPNQQH 250
Query: 81 LIATASGDKTVRLWDARSG 99
++AT D + +WD R G
Sbjct: 251 VVATGGQDGMLSIWDVRQG 269
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
>pdb|1OZ6|A Chain A, X-ray Structure Of Acidic Phospholipase A2 From Indian
Saw- Scaled Viper (echis Carinatus) With A Potent
Platelet Aggregation Inhibitory Activity
Length = 120
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 150 YEVNEIAWNMTGEMFFLTTGNAGCYC 175
Y+ + WN TG++ L+ G+ GCYC
Sbjct: 3 YQFGRMIWNRTGKLPILSYGSYGCYC 28
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 64/174 (36%), Gaps = 20/174 (11%)
Query: 16 YTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHI-----EPHGHGKVKDIELRGHADSV 69
++ H V +V +N LASG + +W + P + + + D V
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168
Query: 70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT--------YKPDGT 121
L W+ A + A+A +WD ++ K + N I + + T
Sbjct: 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228
Query: 122 HIAVG---NRDDELTILDVRKFK-PIHRRKFGYE--VNEIAWNMTGEMFFLTTG 169
+A + D + I D+R P+ G++ + + W E L++G
Sbjct: 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 17 TGHKKKVHSVAW---NCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+G K+++ V W N T A+GS D + +W + + + ++ + +GH + L
Sbjct: 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR-NANTPLQTLN-QGHQKGILSL 268
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQ 104
W + L+ ++ D TV LW+ S + Q
Sbjct: 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ 300
>pdb|1GZD|A Chain A, Crystal Structure Of Pig Phosphoglucose Isomerase
pdb|1GZV|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From Pig
Muscle Complexed With 5-Phosphoarabinonate
Length = 557
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 80 DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK 139
+L+ A V L +R + +++ +GE IN T H+A+ NR + ++D +
Sbjct: 57 NLVTEAVMQMLVDLAKSRGVEAARERMFNGEKINFTEDRAVLHVALRNRSNTPILVDGKD 116
Query: 140 FKPIHRRKFGYEVNEIAWNM 159
P EVN + M
Sbjct: 117 VMP--------EVNRVLEKM 128
>pdb|1WMR|A Chain A, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1WMR|B Chain B, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1X0C|A Chain A, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|1X0C|B Chain B, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|2Z8G|A Chain A, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
pdb|2Z8G|B Chain B, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
Length = 549
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 16 YTGHKKKV--HSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+TGH V SV W G+V+ + ++ GHG + S +Q
Sbjct: 211 FTGHDHMVLSSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVL----------SGEQY 260
Query: 73 CW--DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD 130
W DP A+ + + +R+W G SQ L+G + ++ P + GN D
Sbjct: 261 VWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNG--VTVSAPPFNSMDWSGNSLD 318
Query: 131 ELT--ILDVRKFKPIHRRKFGYEV 152
+T + D ++ + + G E+
Sbjct: 319 LITCRVDDYKQVGAFYGQTDGLEM 342
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 82 IATASGDKTVRLWDARSGKCSQQAELSGENI 112
AT D T+R+WD + KC Q+ L + +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQL 297
>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 200 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 259
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 260 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 303
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 82 IATASGDKTVRLWDARSGKCSQQAELSGENI 112
AT D T+R+WD + KC Q+ L + +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQL 297
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 201 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 260
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 261 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 304
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 34/227 (14%)
Query: 69 VDQLCWDPKHADLIATASGDKTVRLWD---ARSGKCSQQAELSGENI--NITYKPDGTHI 123
V + W + L+A+ SG V LW+ S ++ A+ ++I ++ DGT
Sbjct: 97 VTDVAWVSEKGILVASDSG--AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA 154
Query: 124 AVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI----AI 178
G +D + + D+ + + EVN +A + FL+ G G +
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 179 DPMGRY---------------------FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 217
P R FA G VSL +I +T +
Sbjct: 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274
Query: 218 ISFS-HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 263
+++S H+ ++AS SED + + + + R + V W+P
Sbjct: 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSP 321
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H V +++ GT+ SG D + +VW + K H+ V+ + P
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK----SYNAHSSEVNCVAACPGK 193
Query: 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTH-IAVGNRDDELTI 134
+ + D + LWD R K + + + + ++T+ P+ A G+ +++
Sbjct: 194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253
Query: 135 LDVR 138
++++
Sbjct: 254 VNIK 257
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 173 QPLXSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 232
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 233 FALSKTGSLNLYVXDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 276
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
Length = 1069
Score = 27.3 bits (59), Expect = 9.7, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATASG 87
T +K A A+ W +P+G G + +RG A V +LC +PK D I + G
Sbjct: 381 TNSKQAIAKKIDAAQNWLADPNG-GSEGEEHIRGIMSEARKVAELCEEPKERDDILRSLG 439
Query: 88 D---KTVRLWDAR 97
+ T +L D R
Sbjct: 440 EISALTAKLSDLR 452
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,679,457
Number of Sequences: 62578
Number of extensions: 412421
Number of successful extensions: 1808
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 412
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)