Query 022716
Match_columns 293
No_of_seqs 173 out of 2110
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 05:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1407 WD40 repeat protein [F 100.0 6.4E-51 1.4E-55 309.0 26.8 287 4-292 4-312 (313)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-43 2.4E-48 282.6 24.4 270 2-275 135-473 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-42 3.4E-47 278.9 22.0 257 18-278 173-455 (459)
4 KOG0263 Transcription initiati 100.0 7.7E-40 1.7E-44 281.6 23.6 244 20-292 378-650 (707)
5 KOG0271 Notchless-like WD40 re 100.0 4E-39 8.6E-44 256.7 23.7 266 12-290 107-438 (480)
6 KOG0279 G protein beta subunit 100.0 4.7E-38 1E-42 241.1 27.6 250 13-291 8-262 (315)
7 KOG0286 G-protein beta subunit 100.0 4.3E-37 9.3E-42 237.2 28.4 243 12-276 47-338 (343)
8 KOG0279 G protein beta subunit 100.0 4.9E-37 1.1E-41 235.5 27.7 245 12-292 55-314 (315)
9 KOG0315 G-protein beta subunit 100.0 4.4E-37 9.6E-42 232.3 26.8 257 3-282 19-287 (311)
10 KOG0265 U5 snRNP-specific prot 100.0 7.8E-36 1.7E-40 231.0 25.7 262 14-279 41-334 (338)
11 KOG0293 WD40 repeat-containing 100.0 5E-36 1.1E-40 241.1 23.3 274 5-290 211-512 (519)
12 KOG0263 Transcription initiati 100.0 6.2E-36 1.4E-40 257.6 24.2 207 12-243 443-650 (707)
13 KOG0282 mRNA splicing factor [ 100.0 4.7E-37 1E-41 251.2 16.3 266 11-280 205-502 (503)
14 KOG0318 WD40 repeat stress pro 100.0 4.2E-34 9.1E-39 236.2 32.2 260 16-280 186-557 (603)
15 KOG0273 Beta-transducin family 100.0 1.6E-34 3.4E-39 235.8 28.4 251 21-278 236-518 (524)
16 KOG0272 U4/U6 small nuclear ri 100.0 9.6E-37 2.1E-41 245.7 15.0 205 11-240 252-458 (459)
17 KOG0273 Beta-transducin family 100.0 1.8E-34 4E-39 235.4 24.1 270 18-288 176-487 (524)
18 KOG0643 Translation initiation 100.0 3.4E-33 7.4E-38 213.3 27.8 252 15-292 5-318 (327)
19 KOG0266 WD40 repeat-containing 100.0 1.1E-33 2.4E-38 247.1 28.8 252 12-291 195-454 (456)
20 KOG0291 WD40-repeat-containing 100.0 1.4E-33 3.1E-38 241.9 27.1 248 17-290 347-622 (893)
21 cd00200 WD40 WD40 domain, foun 100.0 3.4E-32 7.4E-37 223.5 33.9 260 14-278 3-286 (289)
22 KOG0645 WD40 repeat protein [G 100.0 2.7E-32 5.8E-37 208.7 30.4 255 12-292 6-312 (312)
23 KOG0295 WD40 repeat-containing 100.0 2.1E-34 4.5E-39 228.3 19.4 256 12-277 142-400 (406)
24 PLN00181 protein SPA1-RELATED; 100.0 3.6E-32 7.7E-37 253.6 37.1 265 16-290 479-792 (793)
25 KOG0291 WD40-repeat-containing 100.0 8E-33 1.7E-37 237.3 29.0 239 20-282 307-549 (893)
26 KOG0284 Polyadenylation factor 100.0 3.6E-35 7.7E-40 235.8 12.5 237 20-281 96-335 (464)
27 KOG0284 Polyadenylation factor 100.0 5.1E-35 1.1E-39 234.8 13.3 239 16-279 134-376 (464)
28 KOG0315 G-protein beta subunit 100.0 1.5E-32 3.3E-37 207.8 25.4 229 12-260 75-307 (311)
29 KOG0285 Pleiotropic regulator 100.0 1.8E-33 4E-38 222.7 20.2 242 13-281 144-387 (460)
30 KOG0319 WD40-repeat-containing 100.0 2.1E-33 4.5E-38 240.3 21.5 252 11-282 356-618 (775)
31 KOG0266 WD40 repeat-containing 100.0 6.4E-32 1.4E-36 236.0 31.3 253 7-283 146-409 (456)
32 KOG0295 WD40 repeat-containing 100.0 2.5E-33 5.4E-38 222.2 20.2 253 6-292 95-365 (406)
33 KOG0286 G-protein beta subunit 100.0 2.1E-32 4.5E-37 211.4 23.4 206 12-240 137-343 (343)
34 KOG0296 Angio-associated migra 100.0 7.2E-31 1.6E-35 208.4 26.9 264 13-291 99-398 (399)
35 KOG0319 WD40-repeat-containing 100.0 5.1E-31 1.1E-35 225.8 26.1 267 13-291 97-577 (775)
36 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-30 7.2E-35 201.4 28.4 246 15-279 9-301 (311)
37 KOG0292 Vesicle coat complex C 100.0 2.6E-31 5.6E-36 231.6 24.4 260 11-275 42-314 (1202)
38 KOG0283 WD40 repeat-containing 100.0 1.7E-31 3.7E-36 232.0 22.5 245 14-282 260-575 (712)
39 KOG1332 Vesicle coat complex C 100.0 7.5E-32 1.6E-36 203.5 15.5 259 16-282 7-285 (299)
40 KOG0772 Uncharacterized conser 100.0 3.1E-31 6.7E-36 219.0 20.3 251 11-278 158-482 (641)
41 PTZ00421 coronin; Provisional 100.0 2.4E-29 5.2E-34 219.5 33.2 231 15-265 70-315 (493)
42 KOG0647 mRNA export protein (c 100.0 4E-30 8.7E-35 199.6 22.3 252 19-273 26-313 (347)
43 PTZ00420 coronin; Provisional 100.0 9.5E-29 2.1E-33 217.1 33.4 239 12-266 66-319 (568)
44 KOG0316 Conserved WD40 repeat- 100.0 2.1E-30 4.5E-35 194.9 19.6 240 7-275 46-292 (307)
45 KOG0278 Serine/threonine kinas 100.0 7E-31 1.5E-35 199.1 16.7 203 18-246 98-301 (334)
46 KOG0281 Beta-TrCP (transducin 100.0 1E-31 2.2E-36 212.3 12.4 231 20-292 197-429 (499)
47 KOG0318 WD40 repeat stress pro 100.0 2.2E-28 4.7E-33 202.6 31.8 260 12-276 139-510 (603)
48 KOG0277 Peroxisomal targeting 100.0 1.7E-30 3.7E-35 197.2 17.6 239 20-281 60-307 (311)
49 KOG0276 Vesicle coat complex C 100.0 5.2E-30 1.1E-34 216.1 21.7 249 14-286 7-260 (794)
50 KOG0313 Microtubule binding pr 100.0 1.8E-29 3.9E-34 201.4 21.9 250 9-282 133-417 (423)
51 KOG0275 Conserved WD40 repeat- 100.0 5.6E-31 1.2E-35 206.6 12.5 242 16-278 209-504 (508)
52 KOG0285 Pleiotropic regulator 100.0 1.6E-29 3.4E-34 200.5 20.6 244 12-282 185-438 (460)
53 KOG0316 Conserved WD40 repeat- 100.0 5.4E-29 1.2E-33 187.3 22.2 243 10-281 7-255 (307)
54 KOG0288 WD40 repeat protein Ti 100.0 4.3E-30 9.3E-35 206.9 15.9 262 14-278 169-456 (459)
55 KOG0640 mRNA cleavage stimulat 100.0 4.7E-29 1E-33 194.6 20.6 219 14-250 106-343 (430)
56 KOG0641 WD40 repeat protein [G 100.0 7.1E-28 1.5E-32 180.5 25.2 252 14-278 83-344 (350)
57 KOG0289 mRNA splicing factor [ 100.0 2.1E-28 4.5E-33 198.4 24.0 247 12-291 253-506 (506)
58 KOG0282 mRNA splicing factor [ 100.0 8.6E-30 1.9E-34 208.8 16.2 224 11-240 249-503 (503)
59 KOG0294 WD40 repeat-containing 100.0 6E-28 1.3E-32 188.6 25.2 242 13-261 36-305 (362)
60 KOG0276 Vesicle coat complex C 100.0 5.7E-29 1.2E-33 209.9 20.6 235 20-279 55-295 (794)
61 KOG0268 Sof1-like rRNA process 100.0 3.6E-30 7.9E-35 204.3 12.6 258 15-282 61-344 (433)
62 PTZ00421 coronin; Provisional 100.0 4.4E-27 9.6E-32 205.4 33.1 246 19-292 19-291 (493)
63 KOG0306 WD40-repeat-containing 100.0 1.5E-28 3.2E-33 211.2 22.8 264 13-284 366-665 (888)
64 KOG0292 Vesicle coat complex C 100.0 1.1E-28 2.5E-33 215.3 22.2 241 16-281 5-278 (1202)
65 KOG0278 Serine/threonine kinas 100.0 2.6E-29 5.6E-34 190.5 15.3 263 14-283 8-297 (334)
66 KOG0296 Angio-associated migra 100.0 8E-28 1.7E-32 191.1 23.1 247 10-282 54-355 (399)
67 KOG0289 mRNA splicing factor [ 100.0 8.2E-28 1.8E-32 195.0 23.5 238 21-291 220-460 (506)
68 KOG0281 Beta-TrCP (transducin 100.0 1.8E-29 4E-34 199.6 13.4 245 3-292 216-478 (499)
69 KOG0310 Conserved WD40 repeat- 100.0 8.8E-28 1.9E-32 197.3 21.9 239 16-280 64-306 (487)
70 KOG0265 U5 snRNP-specific prot 100.0 1.1E-27 2.3E-32 186.1 20.5 221 15-239 85-335 (338)
71 PTZ00420 coronin; Provisional 100.0 3.1E-26 6.7E-31 201.3 32.2 219 38-281 50-291 (568)
72 KOG0283 WD40 repeat-containing 100.0 6.3E-28 1.4E-32 209.9 19.8 218 8-243 357-577 (712)
73 KOG2445 Nuclear pore complex c 100.0 1E-26 2.2E-31 181.2 24.5 259 16-282 9-317 (361)
74 KOG0973 Histone transcription 100.0 7.8E-27 1.7E-31 208.0 26.6 255 15-292 64-356 (942)
75 KOG1036 Mitotic spindle checkp 100.0 3.6E-26 7.9E-31 178.2 25.9 246 20-274 13-295 (323)
76 cd00200 WD40 WD40 domain, foun 100.0 1.6E-25 3.5E-30 183.8 30.5 223 13-240 44-289 (289)
77 KOG0274 Cdc4 and related F-box 100.0 2E-26 4.3E-31 201.8 25.8 235 16-292 245-483 (537)
78 KOG0313 Microtubule binding pr 100.0 5.8E-27 1.3E-31 187.1 20.3 207 16-242 189-418 (423)
79 KOG0305 Anaphase promoting com 100.0 1.9E-26 4E-31 195.6 24.6 236 19-290 216-460 (484)
80 KOG0293 WD40 repeat-containing 100.0 8.9E-27 1.9E-31 188.0 19.8 226 13-243 262-514 (519)
81 KOG0645 WD40 repeat protein [G 100.0 1.4E-25 2.9E-30 172.1 25.3 204 60-281 8-223 (312)
82 KOG0308 Conserved WD40 repeat- 100.0 2.1E-27 4.6E-32 201.2 16.8 253 18-282 19-284 (735)
83 KOG0264 Nucleosome remodeling 100.0 4.7E-26 1E-30 185.7 22.6 247 16-290 120-403 (422)
84 PLN00181 protein SPA1-RELATED; 99.9 5.4E-25 1.2E-29 205.6 31.8 218 19-241 531-792 (793)
85 KOG0299 U3 snoRNP-associated p 99.9 5.3E-26 1.2E-30 185.7 21.6 228 17-271 199-443 (479)
86 KOG1407 WD40 repeat protein [F 99.9 3.3E-26 7.1E-31 174.7 18.6 229 61-290 15-269 (313)
87 KOG2096 WD40 repeat protein [G 99.9 1E-25 2.2E-30 176.6 21.2 237 14-273 80-351 (420)
88 KOG0274 Cdc4 and related F-box 99.9 1.6E-25 3.4E-30 196.2 24.5 230 19-280 207-438 (537)
89 KOG0310 Conserved WD40 repeat- 99.9 2.3E-25 5.1E-30 183.2 23.0 205 13-242 103-309 (487)
90 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.4E-24 2E-28 175.8 33.1 245 32-281 1-277 (300)
91 KOG2055 WD40 repeat protein [G 99.9 3.7E-25 8.1E-30 180.9 22.9 260 21-290 214-511 (514)
92 KOG0288 WD40 repeat protein Ti 99.9 3.8E-26 8.2E-31 184.3 16.4 219 14-239 213-458 (459)
93 KOG0277 Peroxisomal targeting 99.9 5.3E-26 1.1E-30 172.9 15.5 209 9-241 93-308 (311)
94 KOG0306 WD40-repeat-containing 99.9 1.9E-24 4.2E-29 186.1 26.1 262 20-285 320-624 (888)
95 KOG0639 Transducin-like enhanc 99.9 1.2E-25 2.6E-30 185.7 16.9 239 20-291 465-704 (705)
96 KOG1036 Mitotic spindle checkp 99.9 1.2E-24 2.7E-29 169.6 21.3 207 17-232 51-294 (323)
97 KOG0267 Microtubule severing p 99.9 8E-27 1.7E-31 199.8 9.9 237 13-274 21-259 (825)
98 KOG0269 WD40 repeat-containing 99.9 2.9E-25 6.3E-30 191.6 18.2 245 20-291 39-296 (839)
99 KOG0264 Nucleosome remodeling 99.9 1.3E-24 2.7E-29 177.4 20.2 209 15-242 172-404 (422)
100 KOG1274 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 185.1 27.1 239 17-282 10-261 (933)
101 KOG1063 RNA polymerase II elon 99.9 4.9E-24 1.1E-28 182.1 24.0 267 12-279 183-644 (764)
102 KOG0299 U3 snoRNP-associated p 99.9 4.3E-24 9.3E-29 174.6 22.3 248 13-291 135-410 (479)
103 KOG0300 WD40 repeat-containing 99.9 1.1E-24 2.3E-29 171.0 17.9 244 12-281 140-426 (481)
104 KOG0308 Conserved WD40 repeat- 99.9 1.8E-24 3.9E-29 183.6 18.1 241 13-275 66-319 (735)
105 KOG0270 WD40 repeat-containing 99.9 4.8E-24 1E-28 173.6 19.8 231 31-290 191-448 (463)
106 KOG0643 Translation initiation 99.9 2.5E-23 5.3E-28 159.5 21.8 209 60-285 4-222 (327)
107 KOG0300 WD40 repeat-containing 99.9 4E-24 8.6E-29 167.8 17.6 247 11-278 181-471 (481)
108 KOG0269 WD40 repeat-containing 99.9 9.7E-25 2.1E-29 188.4 15.1 237 23-279 90-336 (839)
109 KOG1273 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 164.8 19.7 246 23-289 26-289 (405)
110 KOG0973 Histone transcription 99.9 1.7E-23 3.7E-28 186.9 23.0 250 16-286 8-315 (942)
111 KOG0647 mRNA export protein (c 99.9 2.1E-23 4.4E-28 162.5 20.4 209 16-231 68-312 (347)
112 KOG4283 Transcription-coupled 99.9 2.4E-23 5.1E-28 161.8 20.6 209 17-245 40-279 (397)
113 KOG0646 WD40 repeat protein [G 99.9 9.9E-24 2.1E-28 172.8 19.4 221 19-265 80-331 (476)
114 KOG1539 WD repeat protein [Gen 99.9 3.3E-23 7.2E-28 180.3 23.4 277 6-282 269-647 (910)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-21 2.2E-26 163.6 31.9 244 13-263 24-300 (300)
116 KOG0275 Conserved WD40 repeat- 99.9 8.6E-25 1.9E-29 172.0 12.1 221 16-240 259-507 (508)
117 KOG0302 Ribosome Assembly prot 99.9 5.5E-23 1.2E-27 164.5 21.8 240 18-275 149-431 (440)
118 KOG0640 mRNA cleavage stimulat 99.9 1.2E-23 2.6E-28 164.5 16.3 210 59-287 105-339 (430)
119 KOG4328 WD40 protein [Function 99.9 5.7E-23 1.2E-27 168.0 19.3 249 14-281 180-448 (498)
120 KOG0639 Transducin-like enhanc 99.9 2.8E-23 6.1E-28 171.8 16.9 249 17-289 416-670 (705)
121 KOG0301 Phospholipase A2-activ 99.9 6.1E-23 1.3E-27 175.5 19.3 241 12-283 6-249 (745)
122 KOG2106 Uncharacterized conser 99.9 2E-21 4.3E-26 160.9 27.4 267 2-280 220-518 (626)
123 KOG0650 WD40 repeat nucleolar 99.9 6.2E-22 1.3E-26 166.9 24.7 266 6-276 386-728 (733)
124 KOG0307 Vesicle coat complex C 99.9 8.1E-24 1.8E-28 189.9 13.7 247 20-292 64-328 (1049)
125 KOG0305 Anaphase promoting com 99.9 6.2E-22 1.4E-26 168.2 23.9 231 26-290 183-418 (484)
126 KOG1446 Histone H3 (Lys4) meth 99.9 7E-22 1.5E-26 154.9 22.2 207 9-241 89-302 (311)
127 KOG0267 Microtubule severing p 99.9 2.8E-24 6.1E-29 184.4 8.6 220 34-284 6-227 (825)
128 KOG0641 WD40 repeat protein [G 99.9 1.5E-20 3.2E-25 141.4 27.2 240 18-279 30-299 (350)
129 KOG0268 Sof1-like rRNA process 99.9 9.1E-23 2E-27 162.5 15.9 232 3-245 88-348 (433)
130 KOG0301 Phospholipase A2-activ 99.9 6.3E-22 1.4E-26 169.3 21.8 246 3-292 34-289 (745)
131 KOG0321 WD40 repeat-containing 99.9 5.3E-22 1.2E-26 168.4 19.6 260 13-292 93-392 (720)
132 KOG0646 WD40 repeat protein [G 99.9 3.6E-22 7.7E-27 163.7 18.0 208 13-225 116-332 (476)
133 KOG2048 WD40 repeat protein [G 99.9 5.3E-21 1.1E-25 163.3 25.7 237 19-279 24-271 (691)
134 KOG0294 WD40 repeat-containing 99.9 1E-20 2.2E-25 148.3 23.5 226 34-291 3-281 (362)
135 KOG0772 Uncharacterized conser 99.9 6.6E-22 1.4E-26 164.1 16.2 218 58-292 159-395 (641)
136 KOG4283 Transcription-coupled 99.9 2.7E-21 5.7E-26 150.5 17.6 201 63-292 40-277 (397)
137 KOG1408 WD40 repeat protein [F 99.9 2.5E-21 5.5E-26 166.4 17.8 246 16-281 455-711 (1080)
138 KOG1274 WD40 repeat protein [G 99.9 5.6E-20 1.2E-24 162.0 25.8 237 19-277 55-294 (933)
139 KOG1539 WD repeat protein [Gen 99.9 3.1E-19 6.7E-24 155.9 29.7 270 12-285 194-608 (910)
140 KOG1332 Vesicle coat complex C 99.9 6.9E-21 1.5E-25 144.5 16.4 214 11-243 47-287 (299)
141 KOG0302 Ribosome Assembly prot 99.9 1.1E-20 2.3E-25 151.5 18.2 209 11-237 202-434 (440)
142 KOG2106 Uncharacterized conser 99.9 4.2E-19 9.1E-24 147.3 26.7 251 20-279 200-473 (626)
143 KOG0303 Actin-binding protein 99.9 3.9E-20 8.3E-25 149.1 19.2 232 14-264 75-320 (472)
144 KOG2048 WD40 repeat protein [G 99.9 2.3E-19 4.9E-24 153.5 24.7 245 14-284 62-320 (691)
145 KOG0270 WD40 repeat-containing 99.9 1.9E-20 4.2E-25 152.8 16.8 207 17-247 240-454 (463)
146 KOG1034 Transcriptional repres 99.9 5.6E-20 1.2E-24 145.0 16.5 253 18-281 87-381 (385)
147 KOG4227 WD40 repeat protein [G 99.8 5.7E-19 1.2E-23 142.6 21.8 274 11-286 47-390 (609)
148 KOG1273 WD40 repeat protein [G 99.8 6E-19 1.3E-23 138.6 20.7 246 12-291 57-322 (405)
149 KOG2919 Guanine nucleotide-bin 99.8 1.5E-18 3.2E-23 136.8 21.8 247 22-291 51-327 (406)
150 KOG1538 Uncharacterized conser 99.8 2.3E-19 5.1E-24 153.5 18.6 240 9-277 42-287 (1081)
151 KOG2096 WD40 repeat protein [G 99.8 6.3E-19 1.4E-23 138.7 18.6 213 61-283 81-308 (420)
152 KOG0650 WD40 repeat nucleolar 99.8 3.6E-19 7.7E-24 150.5 17.5 218 58-278 392-675 (733)
153 KOG0290 Conserved WD40 repeat- 99.8 1.3E-18 2.7E-23 135.4 18.5 240 17-275 93-358 (364)
154 KOG1445 Tumor-specific antigen 99.8 5E-19 1.1E-23 150.7 17.5 125 14-139 73-201 (1012)
155 KOG2110 Uncharacterized conser 99.8 4.9E-17 1.1E-21 130.4 27.3 238 20-293 5-250 (391)
156 KOG1009 Chromatin assembly com 99.8 4E-18 8.7E-23 138.0 20.9 261 14-276 59-365 (434)
157 KOG0642 Cell-cycle nuclear pro 99.8 7.9E-19 1.7E-23 147.4 17.4 231 15-246 289-565 (577)
158 KOG4378 Nuclear protein COP1 [ 99.8 9.6E-19 2.1E-23 145.0 17.4 218 23-265 82-305 (673)
159 KOG0307 Vesicle coat complex C 99.8 1.1E-19 2.3E-24 163.7 12.7 211 13-245 109-330 (1049)
160 PRK11028 6-phosphogluconolacto 99.8 1.6E-16 3.5E-21 134.4 31.3 238 19-273 33-293 (330)
161 KOG0771 Prolactin regulatory e 99.8 8.8E-19 1.9E-23 142.5 15.8 199 24-243 148-355 (398)
162 KOG0321 WD40 repeat-containing 99.8 1.2E-18 2.5E-23 148.3 16.0 254 26-281 55-345 (720)
163 KOG1408 WD40 repeat protein [F 99.8 1.4E-18 3E-23 149.8 16.2 208 16-243 497-714 (1080)
164 KOG2919 Guanine nucleotide-bin 99.8 6.4E-18 1.4E-22 133.3 17.3 232 20-275 104-362 (406)
165 COG2319 FOG: WD40 repeat [Gene 99.8 6.4E-16 1.4E-20 133.6 31.3 242 15-280 60-311 (466)
166 KOG2055 WD40 repeat protein [G 99.8 2.5E-17 5.4E-22 135.4 20.1 222 18-242 255-512 (514)
167 KOG4378 Nuclear protein COP1 [ 99.8 4.3E-18 9.4E-23 141.2 15.8 235 22-281 36-278 (673)
168 KOG1063 RNA polymerase II elon 99.8 5.8E-17 1.3E-21 139.3 22.8 266 8-278 42-386 (764)
169 PRK01742 tolB translocation pr 99.8 6.4E-17 1.4E-21 141.2 23.7 223 13-265 196-427 (429)
170 KOG4328 WD40 protein [Function 99.8 3.5E-18 7.6E-23 140.2 14.2 204 62-283 182-399 (498)
171 KOG1524 WD40 repeat-containing 99.8 1.7E-17 3.7E-22 138.9 15.9 242 18-275 12-278 (737)
172 COG2319 FOG: WD40 repeat [Gene 99.8 5.6E-15 1.2E-19 127.6 32.4 243 12-279 147-396 (466)
173 KOG1587 Cytoplasmic dynein int 99.8 2.8E-16 6E-21 137.5 23.4 248 19-278 241-511 (555)
174 KOG0644 Uncharacterized conser 99.8 1.4E-18 3.1E-23 151.9 8.4 260 14-283 184-468 (1113)
175 KOG1188 WD40 repeat protein [G 99.8 6.6E-17 1.4E-21 128.4 16.7 190 33-245 41-245 (376)
176 KOG0322 G-protein beta subunit 99.8 3E-17 6.6E-22 126.1 14.2 248 16-280 10-320 (323)
177 KOG3881 Uncharacterized conser 99.8 3.2E-16 6.9E-21 126.6 20.6 226 18-266 103-344 (412)
178 KOG0303 Actin-binding protein 99.8 1E-15 2.2E-20 123.9 22.6 195 62-278 77-289 (472)
179 KOG1517 Guanine nucleotide bin 99.7 3E-16 6.5E-21 140.7 20.6 244 21-292 1110-1382(1387)
180 KOG1963 WD40 repeat protein [G 99.7 3.8E-15 8.3E-20 131.4 26.6 264 18-292 203-539 (792)
181 PRK01742 tolB translocation pr 99.7 7.3E-16 1.6E-20 134.6 21.9 206 41-278 183-396 (429)
182 KOG1310 WD40 repeat protein [G 99.7 7.8E-17 1.7E-21 135.4 14.3 224 13-249 43-310 (758)
183 KOG1334 WD40 repeat protein [G 99.7 5.1E-17 1.1E-21 134.5 12.9 274 14-290 136-474 (559)
184 KOG2445 Nuclear pore complex c 99.7 4E-15 8.7E-20 116.9 22.4 233 14-263 53-342 (361)
185 KOG1007 WD repeat protein TSSC 99.7 7E-16 1.5E-20 120.2 17.6 244 13-278 56-356 (370)
186 PRK03629 tolB translocation pr 99.7 7.9E-15 1.7E-19 127.9 26.5 223 13-264 191-428 (429)
187 KOG1034 Transcriptional repres 99.7 4.7E-17 1E-21 128.6 11.2 223 9-242 124-383 (385)
188 PRK11028 6-phosphogluconolacto 99.7 2.6E-14 5.5E-19 121.0 28.8 220 35-273 5-247 (330)
189 KOG1009 Chromatin assembly com 99.7 2.3E-16 4.9E-21 127.9 15.1 207 20-272 13-249 (434)
190 KOG0649 WD40 repeat protein [G 99.7 1.7E-14 3.7E-19 110.0 23.0 224 23-275 13-266 (325)
191 PRK05137 tolB translocation pr 99.7 1.5E-14 3.3E-19 126.7 26.3 224 12-264 193-433 (435)
192 KOG1523 Actin-related protein 99.7 4.6E-15 1E-19 117.1 20.4 228 19-264 9-260 (361)
193 PRK04922 tolB translocation pr 99.7 9.9E-15 2.1E-19 127.7 25.0 222 13-263 196-432 (433)
194 KOG2111 Uncharacterized conser 99.7 3.8E-14 8.2E-19 112.0 25.2 236 22-292 7-257 (346)
195 PF08662 eIF2A: Eukaryotic tra 99.7 7.3E-15 1.6E-19 113.9 20.1 115 171-291 60-179 (194)
196 KOG1240 Protein kinase contain 99.7 1.4E-14 2.9E-19 132.0 24.5 254 10-282 1038-1333(1431)
197 KOG1445 Tumor-specific antigen 99.7 3.2E-16 6.9E-21 133.9 12.8 204 20-244 627-846 (1012)
198 KOG1587 Cytoplasmic dynein int 99.7 6.1E-15 1.3E-19 129.2 21.0 228 42-282 222-471 (555)
199 KOG4497 Uncharacterized conser 99.7 1.7E-15 3.7E-20 120.1 15.7 257 20-280 48-388 (447)
200 KOG1524 WD40 repeat-containing 99.7 5.8E-16 1.3E-20 129.8 12.3 177 13-197 97-283 (737)
201 KOG1188 WD40 repeat protein [G 99.7 2.9E-15 6.2E-20 119.2 15.5 186 80-291 41-242 (376)
202 KOG1538 Uncharacterized conser 99.7 5.5E-15 1.2E-19 127.1 17.7 227 22-279 14-248 (1081)
203 KOG1963 WD40 repeat protein [G 99.7 5.1E-14 1.1E-18 124.4 24.1 248 24-277 20-316 (792)
204 KOG2321 WD40 repeat protein [G 99.7 2.1E-14 4.6E-19 121.5 20.4 248 18-275 49-335 (703)
205 PRK03629 tolB translocation pr 99.7 2.9E-13 6.3E-18 118.1 28.5 206 43-276 180-396 (429)
206 KOG0771 Prolactin regulatory e 99.7 2.3E-15 5E-20 122.7 14.2 188 70-277 148-348 (398)
207 KOG0290 Conserved WD40 repeat- 99.7 2.3E-14 4.9E-19 111.9 18.5 241 22-282 46-317 (364)
208 KOG1272 WD40-repeat-containing 99.7 8.2E-16 1.8E-20 126.8 10.9 223 22-272 131-353 (545)
209 PRK02889 tolB translocation pr 99.7 1.4E-13 3.1E-18 120.2 25.4 222 14-264 189-425 (427)
210 KOG0642 Cell-cycle nuclear pro 99.6 5.7E-15 1.2E-19 124.5 15.2 199 13-212 337-573 (577)
211 KOG0649 WD40 repeat protein [G 99.6 2.9E-13 6.2E-18 103.4 22.4 242 12-275 54-308 (325)
212 KOG1007 WD repeat protein TSSC 99.6 3.2E-14 6.8E-19 111.1 17.3 203 18-243 121-362 (370)
213 KOG2394 WD40 protein DMR-N9 [G 99.6 7.9E-15 1.7E-19 123.1 14.8 199 30-263 183-384 (636)
214 KOG1517 Guanine nucleotide bin 99.6 1.1E-13 2.3E-18 124.7 22.4 234 17-273 1061-1324(1387)
215 PRK02889 tolB translocation pr 99.6 5.1E-13 1.1E-17 116.6 26.4 191 62-275 191-392 (427)
216 PRK04922 tolB translocation pr 99.6 3.4E-13 7.4E-18 118.1 25.0 204 42-274 184-399 (433)
217 PRK05137 tolB translocation pr 99.6 1.1E-12 2.4E-17 115.0 28.2 204 43-275 183-398 (435)
218 KOG0322 G-protein beta subunit 99.6 2E-14 4.3E-19 110.8 13.6 205 19-241 55-322 (323)
219 PF08662 eIF2A: Eukaryotic tra 99.6 3.9E-13 8.5E-18 104.2 20.3 117 108-250 59-186 (194)
220 KOG4497 Uncharacterized conser 99.6 2.9E-14 6.3E-19 113.2 13.1 222 25-282 13-239 (447)
221 KOG2139 WD40 repeat protein [G 99.6 1.8E-12 3.9E-17 104.3 22.6 242 20-264 140-409 (445)
222 TIGR02800 propeller_TolB tol-p 99.6 1.8E-12 3.8E-17 113.3 24.9 220 13-261 182-416 (417)
223 KOG3881 Uncharacterized conser 99.6 4.8E-13 1E-17 108.4 19.0 246 20-283 55-320 (412)
224 PRK00178 tolB translocation pr 99.6 6.7E-12 1.4E-16 110.1 26.4 223 13-264 191-428 (430)
225 KOG4227 WD40 repeat protein [G 99.5 1.4E-12 3E-17 106.0 19.4 219 18-243 103-388 (609)
226 TIGR02800 propeller_TolB tol-p 99.5 1.6E-11 3.5E-16 107.4 27.3 204 43-275 171-386 (417)
227 KOG2110 Uncharacterized conser 99.5 1.9E-11 4.1E-16 98.7 23.8 191 22-243 48-249 (391)
228 PF02239 Cytochrom_D1: Cytochr 99.5 7.9E-12 1.7E-16 106.4 22.7 267 14-286 30-350 (369)
229 PRK04792 tolB translocation pr 99.5 1.5E-11 3.2E-16 108.0 24.9 222 14-264 211-447 (448)
230 KOG2139 WD40 repeat protein [G 99.5 1E-11 2.2E-16 100.1 21.1 230 21-276 99-368 (445)
231 KOG1240 Protein kinase contain 99.5 2.5E-12 5.4E-17 117.7 19.8 216 60-292 1042-1274(1431)
232 KOG1523 Actin-related protein 99.5 5.2E-12 1.1E-16 100.1 18.6 202 12-224 47-261 (361)
233 KOG2111 Uncharacterized conser 99.5 2.8E-11 6E-16 96.0 22.4 175 42-243 75-257 (346)
234 KOG4190 Uncharacterized conser 99.5 5.9E-14 1.3E-18 118.7 7.4 223 6-247 721-953 (1034)
235 PRK01029 tolB translocation pr 99.5 7E-11 1.5E-15 103.0 26.1 229 12-265 176-426 (428)
236 PF10282 Lactonase: Lactonase, 99.5 1.8E-09 4E-14 91.8 34.1 237 21-275 37-313 (345)
237 KOG2394 WD40 protein DMR-N9 [G 99.5 5.1E-12 1.1E-16 106.5 17.7 162 20-221 219-383 (636)
238 KOG2041 WD40 repeat protein [G 99.5 3.9E-12 8.5E-17 110.7 17.5 248 20-289 14-295 (1189)
239 PRK00178 tolB translocation pr 99.5 1.4E-10 3E-15 101.8 27.7 191 62-275 194-395 (430)
240 KOG1354 Serine/threonine prote 99.5 1.2E-11 2.6E-16 99.1 17.8 248 19-289 24-357 (433)
241 KOG1272 WD40-repeat-containing 99.5 1.8E-13 3.9E-18 113.2 7.6 174 109-282 130-322 (545)
242 PRK04792 tolB translocation pr 99.4 2E-10 4.3E-15 100.9 26.2 190 63-275 214-414 (448)
243 PRK01029 tolB translocation pr 99.4 2.4E-10 5.3E-15 99.6 26.0 192 65-274 183-391 (428)
244 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.5E-09 5.4E-14 89.5 30.3 234 42-282 27-329 (352)
245 KOG2314 Translation initiation 99.4 1.2E-10 2.7E-15 98.7 22.1 257 23-290 213-572 (698)
246 KOG0644 Uncharacterized conser 99.4 9.6E-13 2.1E-17 116.0 9.3 223 14-245 226-471 (1113)
247 KOG2321 WD40 repeat protein [G 99.4 1.2E-10 2.5E-15 99.2 19.1 219 64-282 49-301 (703)
248 PF02239 Cytochrom_D1: Cytochr 99.4 9.4E-10 2E-14 93.8 24.5 171 82-273 9-191 (369)
249 KOG1310 WD40 repeat protein [G 99.3 4.6E-12 9.9E-17 107.1 9.2 171 60-241 44-230 (758)
250 KOG2315 Predicted translation 99.3 1.1E-09 2.3E-14 93.2 22.3 115 171-291 271-390 (566)
251 PF10282 Lactonase: Lactonase, 99.3 1.7E-08 3.7E-13 85.9 29.7 230 21-261 87-345 (345)
252 KOG2315 Predicted translation 99.3 1.1E-09 2.3E-14 93.2 21.5 218 19-264 164-411 (566)
253 KOG0974 WD-repeat protein WDR6 99.3 2.1E-10 4.6E-15 103.7 16.9 180 79-281 99-286 (967)
254 KOG0280 Uncharacterized conser 99.3 2.3E-10 5E-15 89.9 14.7 136 23-161 124-265 (339)
255 COG2706 3-carboxymuconate cycl 99.3 2.2E-07 4.7E-12 75.6 31.1 249 16-292 35-322 (346)
256 KOG1064 RAVE (regulator of V-A 99.2 8.2E-11 1.8E-15 111.6 12.5 198 19-252 2207-2408(2439)
257 KOG4547 WD40 repeat-containing 99.2 4.5E-09 9.8E-14 89.9 21.4 167 78-264 4-195 (541)
258 KOG4547 WD40 repeat-containing 99.2 2.2E-09 4.8E-14 91.8 19.1 191 29-243 2-221 (541)
259 KOG1334 WD40 repeat protein [G 99.2 9.1E-11 2E-15 98.0 9.9 228 16-244 181-468 (559)
260 PLN02919 haloacid dehalogenase 99.2 1.1E-07 2.3E-12 91.5 31.7 245 24-277 571-882 (1057)
261 PRK04043 tolB translocation pr 99.2 7.3E-08 1.6E-12 83.8 25.9 183 68-275 189-389 (419)
262 TIGR02658 TTQ_MADH_Hv methylam 99.2 8E-07 1.7E-11 74.6 30.7 210 28-250 53-338 (352)
263 KOG1409 Uncharacterized conser 99.1 8.6E-09 1.9E-13 83.0 17.2 253 8-286 12-273 (404)
264 PRK04043 tolB translocation pr 99.1 1.5E-07 3.3E-12 81.7 26.4 191 22-242 189-400 (419)
265 PLN02919 haloacid dehalogenase 99.1 1.7E-07 3.6E-12 90.2 28.0 218 22-246 625-892 (1057)
266 KOG1354 Serine/threonine prote 99.1 7.1E-09 1.5E-13 83.5 15.2 241 17-279 161-430 (433)
267 PF04762 IKI3: IKI3 family; I 99.1 3.4E-07 7.4E-12 86.6 28.9 257 21-292 22-334 (928)
268 KOG0974 WD-repeat protein WDR6 99.1 4.9E-09 1.1E-13 95.1 15.6 191 25-243 92-289 (967)
269 KOG4532 WD40-like repeat conta 99.1 1.1E-07 2.4E-12 74.3 20.8 204 24-247 71-287 (344)
270 KOG2695 WD40 repeat protein [G 99.1 1.7E-09 3.7E-14 87.0 11.1 156 82-254 227-388 (425)
271 KOG1064 RAVE (regulator of V-A 99.1 8.3E-10 1.8E-14 105.0 9.8 185 63-282 2205-2397(2439)
272 KOG3914 WD repeat protein WDR4 99.1 5.9E-09 1.3E-13 85.4 13.4 161 72-252 68-233 (390)
273 COG5354 Uncharacterized protei 99.0 1.6E-07 3.5E-12 79.4 22.1 259 19-291 31-395 (561)
274 KOG0882 Cyclophilin-related pe 99.0 1E-08 2.3E-13 85.3 13.9 250 19-289 8-314 (558)
275 KOG0280 Uncharacterized conser 99.0 2.7E-07 5.9E-12 73.0 20.7 206 41-265 45-265 (339)
276 KOG2041 WD40 repeat protein [G 99.0 1E-08 2.3E-13 89.9 13.9 245 13-278 64-332 (1189)
277 KOG1832 HIV-1 Vpr-binding prot 99.0 2.6E-10 5.5E-15 101.9 4.2 222 12-268 1093-1316(1516)
278 COG5170 CDC55 Serine/threonine 99.0 2.9E-08 6.3E-13 79.1 14.9 245 19-293 25-311 (460)
279 KOG1409 Uncharacterized conser 99.0 5E-08 1.1E-12 78.7 16.1 204 19-243 67-271 (404)
280 COG4946 Uncharacterized protei 99.0 6.6E-07 1.4E-11 75.4 23.2 219 29-272 275-507 (668)
281 PF00400 WD40: WD domain, G-be 99.0 1.4E-09 3E-14 61.0 5.1 37 12-48 3-39 (39)
282 KOG3914 WD repeat protein WDR4 99.0 1.7E-08 3.6E-13 82.8 13.1 166 22-208 64-231 (390)
283 COG2706 3-carboxymuconate cycl 99.0 5.3E-06 1.2E-10 67.7 26.6 228 22-262 90-345 (346)
284 PF15492 Nbas_N: Neuroblastoma 98.9 6.2E-07 1.3E-11 71.0 20.4 201 22-250 45-267 (282)
285 PF00400 WD40: WD domain, G-be 98.9 6.9E-09 1.5E-13 58.1 6.2 38 203-240 2-39 (39)
286 COG5354 Uncharacterized protei 98.8 6.2E-06 1.3E-10 70.1 24.3 198 68-274 175-420 (561)
287 PF04762 IKI3: IKI3 family; I 98.8 3.9E-06 8.5E-11 79.6 24.7 228 20-273 75-369 (928)
288 PF08450 SGL: SMP-30/Gluconola 98.8 3.9E-05 8.5E-10 62.1 30.8 216 25-272 4-244 (246)
289 KOG4190 Uncharacterized conser 98.8 5.2E-08 1.1E-12 83.3 10.6 170 60-248 729-912 (1034)
290 KOG0309 Conserved WD40 repeat- 98.8 1.1E-07 2.3E-12 84.0 12.6 240 22-291 69-339 (1081)
291 COG4946 Uncharacterized protei 98.8 9.9E-06 2.1E-10 68.5 23.2 219 18-243 357-655 (668)
292 TIGR03300 assembly_YfgL outer 98.8 1.4E-05 3E-10 69.1 25.1 193 80-278 146-374 (377)
293 TIGR03300 assembly_YfgL outer 98.8 1.3E-05 2.8E-10 69.3 24.9 235 31-282 64-337 (377)
294 KOG1645 RING-finger-containing 98.7 2.3E-06 5E-11 70.6 16.1 82 14-100 187-269 (463)
295 KOG2314 Translation initiation 98.6 1.8E-06 3.9E-11 74.0 14.2 139 112-274 214-367 (698)
296 KOG1912 WD40 repeat protein [G 98.6 4.6E-06 1E-10 74.4 16.7 224 13-243 48-305 (1062)
297 KOG1920 IkappaB kinase complex 98.6 2.8E-05 6.1E-10 72.7 21.3 217 67-292 69-323 (1265)
298 KOG4714 Nucleoporin [Nuclear s 98.5 4.2E-07 9.1E-12 70.8 8.1 147 118-283 99-254 (319)
299 KOG2114 Vacuolar assembly/sort 98.5 7.2E-05 1.6E-09 67.7 22.5 245 22-292 27-297 (933)
300 KOG4714 Nucleoporin [Nuclear s 98.5 5.9E-07 1.3E-11 70.0 8.4 75 21-98 180-255 (319)
301 PF13360 PQQ_2: PQQ-like domai 98.5 0.00015 3.2E-09 58.3 22.5 216 41-282 2-229 (238)
302 PF07433 DUF1513: Protein of u 98.5 0.00036 7.8E-09 57.1 24.2 235 22-274 6-277 (305)
303 KOG2695 WD40 repeat protein [G 98.5 4.8E-07 1E-11 73.2 7.4 134 18-151 250-389 (425)
304 PF11768 DUF3312: Protein of u 98.5 3.8E-05 8.3E-10 66.8 18.9 110 70-201 209-330 (545)
305 KOG1920 IkappaB kinase complex 98.5 7.3E-05 1.6E-09 70.1 21.4 196 21-246 69-326 (1265)
306 PF08450 SGL: SMP-30/Gluconola 98.4 0.0005 1.1E-08 55.7 26.2 184 23-227 42-240 (246)
307 KOG0882 Cyclophilin-related pe 98.4 1.7E-06 3.6E-11 72.5 9.4 198 64-279 7-227 (558)
308 KOG1275 PAB-dependent poly(A) 98.4 3.4E-06 7.4E-11 76.4 11.8 153 23-200 180-342 (1118)
309 PF07433 DUF1513: Protein of u 98.4 0.00052 1.1E-08 56.1 23.3 198 71-275 9-238 (305)
310 KOG4532 WD40-like repeat conta 98.4 9.9E-05 2.1E-09 58.2 18.2 171 16-208 111-290 (344)
311 PF13360 PQQ_2: PQQ-like domai 98.4 0.00066 1.4E-08 54.4 24.8 197 31-248 35-236 (238)
312 PF08596 Lgl_C: Lethal giant l 98.3 0.0016 3.5E-08 56.2 25.5 247 22-274 3-327 (395)
313 COG0823 TolB Periplasmic compo 98.3 0.00016 3.5E-09 62.8 19.4 184 68-273 194-389 (425)
314 KOG2066 Vacuolar assembly/sort 98.3 6.1E-05 1.3E-09 67.7 16.7 185 19-242 38-233 (846)
315 PRK02888 nitrous-oxide reducta 98.3 8.8E-05 1.9E-09 66.1 17.4 171 87-292 213-405 (635)
316 KOG0309 Conserved WD40 repeat- 98.3 1.3E-05 2.9E-10 71.2 12.0 221 20-266 24-258 (1081)
317 PF11768 DUF3312: Protein of u 98.3 1.5E-05 3.2E-10 69.3 12.0 74 169-244 258-331 (545)
318 KOG2066 Vacuolar assembly/sort 98.3 0.00013 2.9E-09 65.6 17.9 168 66-269 39-221 (846)
319 COG3391 Uncharacterized conser 98.3 0.0022 4.7E-08 55.5 25.9 220 23-263 76-308 (381)
320 PF06977 SdiA-regulated: SdiA- 98.2 0.0011 2.3E-08 53.3 20.9 194 61-271 16-239 (248)
321 KOG1275 PAB-dependent poly(A) 98.2 3.3E-05 7.2E-10 70.3 13.2 176 79-279 147-338 (1118)
322 KOG1008 Uncharacterized conser 98.2 7.5E-07 1.6E-11 77.7 1.7 198 21-242 57-275 (783)
323 PRK02888 nitrous-oxide reducta 98.1 0.00083 1.8E-08 60.2 20.1 104 116-243 284-405 (635)
324 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0043 9.3E-08 53.1 24.7 237 29-273 1-347 (353)
325 PRK11138 outer membrane biogen 98.1 0.0034 7.3E-08 54.7 23.4 234 32-278 120-389 (394)
326 KOG4640 Anaphase-promoting com 98.0 3.8E-05 8.2E-10 67.2 9.6 90 173-263 23-115 (665)
327 PF04053 Coatomer_WDAD: Coatom 98.0 0.0022 4.8E-08 56.1 20.3 189 65-291 31-232 (443)
328 COG0823 TolB Periplasmic compo 98.0 0.00092 2E-08 58.2 17.8 187 19-232 191-389 (425)
329 KOG2114 Vacuolar assembly/sort 98.0 0.0016 3.4E-08 59.4 19.4 213 68-291 27-252 (933)
330 PF08553 VID27: VID27 cytoplas 98.0 0.00027 5.9E-09 65.3 15.1 144 79-240 493-645 (794)
331 smart00320 WD40 WD40 repeats. 98.0 1.7E-05 3.6E-10 43.1 4.7 36 13-48 5-40 (40)
332 COG5170 CDC55 Serine/threonine 98.0 7.6E-05 1.6E-09 60.1 9.3 175 14-199 165-366 (460)
333 PF15492 Nbas_N: Neuroblastoma 97.9 0.0065 1.4E-07 48.7 22.9 233 26-285 3-261 (282)
334 PF04053 Coatomer_WDAD: Coatom 97.9 0.0041 8.8E-08 54.5 20.2 138 14-168 26-163 (443)
335 KOG1832 HIV-1 Vpr-binding prot 97.9 8.8E-06 1.9E-10 73.8 2.8 192 62-288 1097-1296(1516)
336 smart00320 WD40 WD40 repeats. 97.9 7.9E-05 1.7E-09 40.2 5.8 38 203-240 3-40 (40)
337 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0099 2.2E-07 47.2 23.5 237 33-280 24-297 (354)
338 PRK11138 outer membrane biogen 97.8 0.018 3.9E-07 50.1 23.5 236 31-281 68-351 (394)
339 COG3391 Uncharacterized conser 97.8 0.022 4.7E-07 49.3 27.2 227 22-273 32-272 (381)
340 PF04841 Vps16_N: Vps16, N-ter 97.8 0.023 5E-07 49.6 25.9 216 26-266 34-272 (410)
341 KOG1912 WD40 repeat protein [G 97.7 0.00073 1.6E-08 60.9 12.1 151 113-274 20-177 (1062)
342 KOG3617 WD40 and TPR repeat-co 97.7 0.00074 1.6E-08 61.6 12.2 108 71-200 20-131 (1416)
343 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0099 2.2E-07 40.9 14.6 100 23-133 2-109 (111)
344 PF14583 Pectate_lyase22: Olig 97.6 0.036 7.7E-07 47.1 27.8 254 27-292 42-382 (386)
345 KOG2444 WD40 repeat protein [G 97.5 0.0003 6.5E-09 54.4 5.6 139 82-243 33-178 (238)
346 PF03178 CPSF_A: CPSF A subuni 97.4 0.07 1.5E-06 45.0 23.0 166 89-278 62-260 (321)
347 KOG2395 Protein involved in va 97.4 0.0041 8.8E-08 54.0 11.7 136 81-232 348-491 (644)
348 KOG1645 RING-finger-containing 97.4 0.00068 1.5E-08 56.5 6.9 91 194-291 175-266 (463)
349 PF03178 CPSF_A: CPSF A subuni 97.4 0.072 1.6E-06 45.0 22.1 194 23-238 29-261 (321)
350 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.054 1.2E-06 43.1 18.6 113 76-209 20-132 (354)
351 COG3204 Uncharacterized protei 97.3 0.067 1.4E-06 43.4 18.3 202 63-282 82-302 (316)
352 PF00930 DPPIV_N: Dipeptidyl p 97.2 0.0029 6.4E-08 54.1 10.0 82 191-275 22-122 (353)
353 KOG4640 Anaphase-promoting com 97.2 0.0022 4.7E-08 56.6 9.0 90 67-158 21-114 (665)
354 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.032 6.9E-07 38.5 15.0 60 75-137 11-70 (111)
355 KOG1008 Uncharacterized conser 97.2 0.0001 2.3E-09 64.7 0.8 197 68-290 58-274 (783)
356 KOG3621 WD40 repeat-containing 97.2 0.016 3.5E-07 52.1 13.9 129 79-221 45-179 (726)
357 KOG3621 WD40 repeat-containing 97.1 0.0016 3.4E-08 58.2 7.1 101 175-275 38-146 (726)
358 cd00216 PQQ_DH Dehydrogenases 97.1 0.21 4.5E-06 44.9 24.5 237 33-290 111-432 (488)
359 PF06433 Me-amine-dh_H: Methyl 97.1 0.15 3.2E-06 42.8 26.6 59 193-252 270-330 (342)
360 PF04841 Vps16_N: Vps16, N-ter 97.0 0.15 3.3E-06 44.6 18.6 172 90-282 62-245 (410)
361 KOG4441 Proteins containing BT 97.0 0.12 2.6E-06 47.2 18.3 231 29-289 282-544 (571)
362 KOG3617 WD40 and TPR repeat-co 96.9 0.0039 8.4E-08 57.1 7.4 108 113-242 20-131 (1416)
363 PF06977 SdiA-regulated: SdiA- 96.9 0.18 3.8E-06 40.7 21.7 205 14-237 15-245 (248)
364 KOG2444 WD40 repeat protein [G 96.8 0.0038 8.3E-08 48.4 6.0 105 181-292 69-178 (238)
365 PF05096 Glu_cyclase_2: Glutam 96.8 0.2 4.4E-06 40.4 21.7 179 69-273 47-250 (264)
366 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0065 1.4E-07 35.0 5.0 31 20-50 11-41 (47)
367 PRK13616 lipoprotein LpqB; Pro 96.7 0.14 3E-06 46.9 16.1 147 111-273 352-515 (591)
368 COG3386 Gluconolactonase [Carb 96.6 0.34 7.5E-06 40.5 23.4 101 174-275 166-277 (307)
369 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0094 2E-07 34.3 5.1 34 211-245 10-43 (47)
370 PHA02713 hypothetical protein; 96.5 0.11 2.4E-06 47.4 14.4 63 181-245 463-536 (557)
371 PF08553 VID27: VID27 cytoplas 96.5 0.52 1.1E-05 44.4 18.6 134 40-199 502-646 (794)
372 COG3386 Gluconolactonase [Carb 96.5 0.4 8.7E-06 40.1 18.7 101 112-227 166-270 (307)
373 TIGR02604 Piru_Ver_Nterm putat 96.4 0.41 9E-06 41.3 16.7 58 214-272 125-202 (367)
374 PF00780 CNH: CNH domain; Int 96.4 0.45 9.8E-06 39.0 25.0 121 30-158 5-147 (275)
375 PRK13616 lipoprotein LpqB; Pro 96.3 0.5 1.1E-05 43.4 17.3 181 67-263 350-550 (591)
376 KOG2079 Vacuolar assembly/sort 96.3 0.014 3E-07 55.0 7.2 93 181-273 98-195 (1206)
377 PF08596 Lgl_C: Lethal giant l 96.3 0.17 3.6E-06 43.9 13.5 131 111-242 4-173 (395)
378 PF10168 Nup88: Nuclear pore c 96.1 0.4 8.6E-06 45.0 15.8 89 111-201 87-180 (717)
379 PF02897 Peptidase_S9_N: Proly 96.0 1 2.2E-05 39.5 24.8 159 69-245 126-312 (414)
380 PF12234 Rav1p_C: RAVE protein 95.8 0.87 1.9E-05 41.8 15.9 104 86-199 48-155 (631)
381 KOG2395 Protein involved in va 95.8 0.19 4.1E-06 44.2 11.1 118 15-138 371-500 (644)
382 PF06433 Me-amine-dh_H: Methyl 95.6 1.2 2.6E-05 37.5 20.9 196 89-286 67-323 (342)
383 PF07995 GSDH: Glucose / Sorbo 95.6 1.3 2.8E-05 37.7 21.5 66 213-278 253-330 (331)
384 cd00216 PQQ_DH Dehydrogenases 95.4 1.9 4.1E-05 38.8 26.7 172 90-268 257-452 (488)
385 KOG4460 Nuclear pore complex, 95.4 0.65 1.4E-05 41.0 13.1 93 112-204 107-202 (741)
386 PF05096 Glu_cyclase_2: Glutam 95.3 1.2 2.7E-05 36.0 23.4 183 21-232 45-251 (264)
387 PF02897 Peptidase_S9_N: Proly 95.3 1.9 4.1E-05 37.8 26.6 115 21-140 124-262 (414)
388 PF14761 HPS3_N: Hermansky-Pud 95.2 0.63 1.4E-05 36.3 11.3 47 183-230 29-77 (215)
389 COG4590 ABC-type uncharacteriz 95.2 0.15 3.2E-06 44.1 8.5 155 113-293 225-388 (733)
390 KOG3630 Nuclear pore complex, 95.1 0.089 1.9E-06 50.2 7.6 108 172-279 102-224 (1405)
391 PHA03098 kelch-like protein; P 95.1 2 4.3E-05 39.2 16.4 105 181-291 389-511 (534)
392 KOG2079 Vacuolar assembly/sort 95.0 0.24 5.2E-06 47.2 10.0 100 80-179 100-205 (1206)
393 PF12234 Rav1p_C: RAVE protein 94.9 1 2.2E-05 41.4 13.4 98 176-273 35-148 (631)
394 PHA02713 hypothetical protein; 94.7 1.7 3.8E-05 39.8 14.8 79 193-275 433-523 (557)
395 PHA03098 kelch-like protein; P 94.7 3.1 6.8E-05 37.9 16.5 62 181-244 437-513 (534)
396 KOG1897 Damage-specific DNA bi 94.7 4.3 9.3E-05 38.9 22.0 98 175-275 779-890 (1096)
397 PF14870 PSII_BNR: Photosynthe 94.6 2.3 4.9E-05 35.5 24.0 101 171-274 145-253 (302)
398 PF11715 Nup160: Nucleoporin N 94.4 0.45 9.7E-06 43.5 10.4 72 180-251 156-257 (547)
399 PF14727 PHTB1_N: PTHB1 N-term 94.3 3.4 7.4E-05 36.2 18.3 153 76-240 34-202 (418)
400 PF10647 Gmad1: Lipoprotein Lp 94.2 2.5 5.5E-05 34.3 15.6 143 110-275 25-187 (253)
401 PF14583 Pectate_lyase22: Olig 94.0 3.6 7.7E-05 35.4 17.0 190 73-272 42-256 (386)
402 KOG1916 Nuclear protein, conta 93.9 0.04 8.7E-07 51.2 2.4 149 89-247 153-328 (1283)
403 KOG2247 WD40 repeat-containing 93.9 0.0064 1.4E-07 52.4 -2.4 154 111-290 37-197 (615)
404 PF10313 DUF2415: Uncharacteri 93.8 0.43 9.4E-06 26.7 5.5 32 68-99 2-35 (43)
405 KOG4441 Proteins containing BT 93.7 3.1 6.7E-05 38.3 14.1 187 31-244 332-548 (571)
406 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.6 5.6 0.00012 36.2 25.9 106 32-143 69-194 (527)
407 COG5167 VID27 Protein involved 93.5 2.6 5.5E-05 37.4 12.3 135 78-229 478-620 (776)
408 KOG4460 Nuclear pore complex, 93.1 1.2 2.5E-05 39.5 9.7 76 172-247 105-203 (741)
409 PF00780 CNH: CNH domain; Int 93.1 4.2 9.1E-05 33.3 22.1 119 20-142 35-169 (275)
410 KOG4499 Ca2+-binding protein R 92.9 4 8.6E-05 32.5 15.2 45 177-221 218-262 (310)
411 PF07569 Hira: TUP1-like enhan 92.8 1.4 2.9E-05 35.0 9.3 69 178-247 18-100 (219)
412 PF14655 RAB3GAP2_N: Rab3 GTPa 92.8 1.9 4E-05 37.7 10.7 80 172-251 309-407 (415)
413 PF10313 DUF2415: Uncharacteri 92.7 0.79 1.7E-05 25.7 5.5 30 214-243 2-34 (43)
414 PF14761 HPS3_N: Hermansky-Pud 92.6 4.1 8.9E-05 31.9 13.8 122 80-202 29-165 (215)
415 PF07995 GSDH: Glucose / Sorbo 92.5 6 0.00013 33.6 13.6 102 173-276 4-136 (331)
416 PF10168 Nup88: Nuclear pore c 92.5 4.7 0.0001 38.1 13.6 74 172-245 86-182 (717)
417 TIGR02276 beta_rpt_yvtn 40-res 92.4 1.1 2.3E-05 24.6 6.2 40 222-261 1-41 (42)
418 PF14870 PSII_BNR: Photosynthe 92.1 6.3 0.00014 32.9 15.9 138 111-272 147-294 (302)
419 TIGR02276 beta_rpt_yvtn 40-res 91.9 1 2.2E-05 24.7 5.7 40 77-116 2-41 (42)
420 PHA02790 Kelch-like protein; P 91.8 9.6 0.00021 34.3 15.5 61 79-139 319-385 (480)
421 PF10647 Gmad1: Lipoprotein Lp 91.7 6.2 0.00013 32.1 13.7 100 172-274 25-132 (253)
422 PF07569 Hira: TUP1-like enhan 91.7 1.8 3.9E-05 34.3 8.8 87 106-202 10-97 (219)
423 PRK13684 Ycf48-like protein; P 91.3 8.5 0.00018 32.8 23.8 98 171-272 173-278 (334)
424 KOG2247 WD40 repeat-containing 90.7 0.031 6.7E-07 48.4 -2.2 141 73-236 41-182 (615)
425 KOG3630 Nuclear pore complex, 90.6 2.3 5E-05 41.3 9.4 144 21-164 101-258 (1405)
426 COG3204 Uncharacterized protei 90.4 9 0.0002 31.6 12.7 103 172-274 87-201 (316)
427 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.0 15 0.00032 33.5 21.4 75 192-267 441-517 (527)
428 PF15390 DUF4613: Domain of un 90.0 15 0.00032 33.5 16.9 148 21-199 20-185 (671)
429 KOG1983 Tomosyn and related SN 89.8 20 0.00042 35.5 15.3 31 19-49 34-64 (993)
430 PF15390 DUF4613: Domain of un 89.6 16 0.00035 33.3 16.7 148 68-243 21-187 (671)
431 PF11715 Nup160: Nucleoporin N 89.5 3 6.6E-05 38.1 9.4 76 30-105 156-256 (547)
432 PF07676 PD40: WD40-like Beta 89.4 2 4.4E-05 23.1 5.2 30 18-47 6-38 (39)
433 COG3823 Glutamine cyclotransfe 89.2 9.2 0.0002 29.9 13.3 105 31-144 55-164 (262)
434 PF14655 RAB3GAP2_N: Rab3 GTPa 88.8 9.5 0.00021 33.4 11.3 89 15-107 302-408 (415)
435 COG3490 Uncharacterized protei 88.7 12 0.00026 30.8 15.0 155 71-230 72-243 (366)
436 KOG1897 Damage-specific DNA bi 88.7 24 0.00053 34.2 28.8 265 21-292 488-816 (1096)
437 PHA02790 Kelch-like protein; P 87.5 21 0.00046 32.1 16.9 101 181-291 362-470 (480)
438 PF07676 PD40: WD40-like Beta 87.3 3.1 6.8E-05 22.4 5.5 32 208-239 4-38 (39)
439 COG3823 Glutamine cyclotransfe 86.9 13 0.00029 29.1 14.4 170 79-272 56-247 (262)
440 PLN00033 photosystem II stabil 86.5 14 0.00031 32.3 11.1 96 174-273 242-347 (398)
441 PF14727 PHTB1_N: PTHB1 N-term 86.5 22 0.00048 31.3 23.0 58 80-137 146-203 (418)
442 TIGR03606 non_repeat_PQQ dehyd 86.2 24 0.00052 31.4 19.5 31 109-139 30-60 (454)
443 PF08728 CRT10: CRT10; InterP 85.1 34 0.00075 32.3 14.7 120 119-241 113-245 (717)
444 KOG4499 Ca2+-binding protein R 85.0 18 0.00039 28.9 17.0 98 175-272 162-273 (310)
445 TIGR02604 Piru_Ver_Nterm putat 84.3 26 0.00057 30.2 17.8 103 21-127 14-142 (367)
446 TIGR03118 PEPCTERM_chp_1 conse 84.1 23 0.00051 29.5 25.0 242 22-274 24-324 (336)
447 COG3490 Uncharacterized protei 83.1 25 0.00054 29.1 17.3 98 177-274 120-246 (366)
448 PF13449 Phytase-like: Esteras 82.8 28 0.00061 29.5 13.2 76 214-291 86-190 (326)
449 TIGR03074 PQQ_membr_DH membran 82.6 48 0.001 31.9 25.3 169 80-251 261-486 (764)
450 KOG2377 Uncharacterized conser 82.4 30 0.00066 30.6 10.9 102 168-271 64-171 (657)
451 PF12657 TFIIIC_delta: Transcr 81.8 16 0.00034 27.7 8.5 30 68-97 87-121 (173)
452 PF08728 CRT10: CRT10; InterP 81.1 29 0.00062 32.8 11.1 160 19-199 39-245 (717)
453 KOG2377 Uncharacterized conser 80.3 42 0.0009 29.8 15.1 125 13-140 59-187 (657)
454 PF14781 BBS2_N: Ciliary BBSom 79.1 21 0.00046 25.7 12.1 92 24-116 2-100 (136)
455 KOG1916 Nuclear protein, conta 79.0 4.7 0.0001 38.4 5.5 24 28-51 243-266 (1283)
456 PF11635 Med16: Mediator compl 79.0 63 0.0014 31.1 17.6 81 110-195 261-345 (753)
457 PRK10115 protease 2; Provision 78.8 61 0.0013 30.8 28.2 111 21-137 127-254 (686)
458 TIGR03606 non_repeat_PQQ dehyd 78.3 50 0.0011 29.5 16.5 107 169-275 28-167 (454)
459 PF03088 Str_synth: Strictosid 75.8 20 0.00044 23.8 7.7 45 230-274 33-77 (89)
460 PF03088 Str_synth: Strictosid 75.5 21 0.00045 23.7 8.6 43 187-230 32-74 (89)
461 COG5167 VID27 Protein involved 73.5 64 0.0014 29.2 10.4 60 79-139 573-633 (776)
462 PF07250 Glyoxal_oxid_N: Glyox 73.0 48 0.0011 26.8 13.6 105 176-281 72-197 (243)
463 KOG1520 Predicted alkaloid syn 72.5 63 0.0014 27.9 12.2 126 107-239 113-247 (376)
464 TIGR03032 conserved hypothetic 72.2 54 0.0012 27.6 9.3 48 79-128 213-260 (335)
465 KOG2280 Vacuolar assembly/sort 71.8 93 0.002 29.5 15.8 38 213-250 217-254 (829)
466 PF01436 NHL: NHL repeat; Int 71.1 11 0.00024 18.6 3.6 25 23-47 4-28 (28)
467 KOG3616 Selective LIM binding 70.9 7.9 0.00017 36.2 4.7 54 212-265 14-67 (1636)
468 PF12657 TFIIIC_delta: Transcr 69.5 46 0.001 25.1 9.2 30 172-201 87-122 (173)
469 PF12768 Rax2: Cortical protei 68.6 67 0.0015 26.6 11.0 72 173-245 39-126 (281)
470 PF03022 MRJP: Major royal jel 68.2 69 0.0015 26.6 21.6 195 91-290 36-276 (287)
471 PF11635 Med16: Mediator compl 68.0 17 0.00038 34.8 6.6 68 170-237 259-345 (753)
472 PF05935 Arylsulfotrans: Aryls 67.5 83 0.0018 28.4 10.5 52 218-272 153-208 (477)
473 PF07250 Glyoxal_oxid_N: Glyox 67.5 23 0.0005 28.6 6.3 84 195-278 49-142 (243)
474 smart00564 PQQ beta-propeller 67.2 15 0.00032 18.6 4.0 24 226-249 8-31 (33)
475 TIGR03074 PQQ_membr_DH membran 66.9 1.3E+02 0.0027 29.2 22.5 67 80-146 195-286 (764)
476 PF12768 Rax2: Cortical protei 66.8 60 0.0013 26.9 8.7 76 193-269 17-105 (281)
477 PF01731 Arylesterase: Arylest 66.8 34 0.00074 22.6 6.5 48 192-242 36-84 (86)
478 PF05694 SBP56: 56kDa selenium 66.8 93 0.002 27.6 24.5 235 17-272 60-392 (461)
479 PF10395 Utp8: Utp8 family; I 66.5 1.2E+02 0.0025 28.6 15.4 156 20-178 129-304 (670)
480 PF14781 BBS2_N: Ciliary BBSom 66.4 47 0.001 24.0 14.4 76 81-157 12-100 (136)
481 PF08801 Nucleoporin_N: Nup133 66.1 94 0.002 27.4 13.1 31 171-201 190-220 (422)
482 KOG1900 Nuclear pore complex, 65.2 1.6E+02 0.0036 29.9 13.3 160 70-243 82-273 (1311)
483 COG1520 FOG: WD40-like repeat 65.0 74 0.0016 27.4 9.5 69 185-254 71-141 (370)
484 PLN00033 photosystem II stabil 64.3 1E+02 0.0022 27.1 18.7 97 172-272 282-389 (398)
485 PLN02193 nitrile-specifier pro 64.2 1.1E+02 0.0024 27.5 18.2 65 181-245 328-413 (470)
486 PF13449 Phytase-like: Esteras 63.4 93 0.002 26.4 17.2 106 21-128 20-166 (326)
487 PF10433 MMS1_N: Mono-function 62.5 1.2E+02 0.0026 27.5 19.7 105 29-135 219-339 (504)
488 KOG2109 WD40 repeat protein [G 62.1 12 0.00026 34.4 4.1 83 194-276 297-391 (788)
489 PF10214 Rrn6: RNA polymerase 61.9 1.6E+02 0.0034 28.5 17.2 124 18-142 77-236 (765)
490 KOG3616 Selective LIM binding 60.5 23 0.00049 33.4 5.5 66 67-135 15-80 (1636)
491 TIGR03548 mutarot_permut cycli 58.7 1.1E+02 0.0024 25.7 15.1 184 31-234 72-314 (323)
492 COG4590 ABC-type uncharacteriz 58.5 1.4E+02 0.003 26.7 10.0 108 32-142 280-390 (733)
493 PLN02153 epithiospecifier prot 58.2 1.2E+02 0.0025 25.8 15.7 188 31-235 85-326 (341)
494 KOG2280 Vacuolar assembly/sort 56.7 1.8E+02 0.004 27.7 13.9 38 171-208 217-254 (829)
495 KOG3611 Semaphorins [Signal tr 56.4 1.6E+02 0.0035 28.2 10.5 69 170-238 407-489 (737)
496 PF12341 DUF3639: Protein of u 55.5 26 0.00055 17.4 3.8 25 22-48 3-27 (27)
497 PRK13684 Ycf48-like protein; P 55.0 1.3E+02 0.0029 25.5 19.9 99 171-272 215-321 (334)
498 PF13570 PQQ_3: PQQ-like domai 54.9 27 0.00059 18.7 3.4 20 119-138 20-39 (40)
499 PRK10115 protease 2; Provision 54.1 2E+02 0.0044 27.4 24.3 60 68-128 128-191 (686)
500 PF01011 PQQ: PQQ enzyme repea 53.9 33 0.00072 18.2 5.2 29 226-254 2-30 (38)
No 1
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.4e-51 Score=308.96 Aligned_cols=287 Identities=57% Similarity=1.050 Sum_probs=265.8
Q ss_pred cCcccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEE
Q 022716 4 SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA 83 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~ 83 (293)
...+|+....+++.+|.++|++++|+.+|..|++|+.|+++++|+++.. .........+|.+.|-.++|+|..+++|+
T Consensus 4 t~~~~~~l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~--r~~~~~~~~gh~~svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 4 TLPKFKSLKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD--RFRKELVYRGHTDSVDQLCWDPKHPDLFA 81 (313)
T ss_pred cccchhhhhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch--hhhhhhcccCCCcchhhheeCCCCCcceE
Confidence 3456777788999999999999999999999999999999999999854 23334457799999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716 84 TASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 84 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
+++.|.+|++||++.+++....+..+..+.+.|+|+|.+++++..|..|...|.++.+.+...++..+++.+.|+..+++
T Consensus 82 tas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL 161 (313)
T ss_pred EecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred EEEecCC---------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEcc
Q 022716 164 FFLTTGN---------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH 222 (293)
Q Consensus 164 ~~~~~~~---------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp 222 (293)
++++.+. ..|.||.|+|+|+++|+|++|-.+-+||++...+++.+..+++||+.|+||.
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~ 241 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH 241 (313)
T ss_pred EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc
Confidence 8877653 4588999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCC-CCCCcceEEEEeeec
Q 022716 223 TGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK-YQADEGVFRIYGFEN 292 (293)
Q Consensus 223 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~-~~~~~~~~~~~~~~~ 292 (293)
+|++||+||+|..|.|=++++|..++.+++.++...|+|||+..+||++.+|++- +-++.|++|||.+++
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred CcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 9999999999999999999999999999999999999999999999999999866 457889999999986
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-43 Score=282.56 Aligned_cols=270 Identities=27% Similarity=0.443 Sum_probs=220.7
Q ss_pred CCcCcccccc----cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC
Q 022716 2 GESSIPFKNL----HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77 (293)
Q Consensus 2 ~~~~~~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 77 (293)
|+..+.||+. +..+.+||+..|.|++|+|||+.||+|+.||+|++||..... ..-..+++|...|++++|.|-
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~---~~g~~l~gH~K~It~Lawep~ 211 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ---QIGRALRGHKKWITALAWEPL 211 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC---cccccccCcccceeEEeeccc
Confidence 5566777764 456688999999999999999999999999999999976532 222358899999999999873
Q ss_pred ----CCCEEEEEeCCCeEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccce
Q 022716 78 ----HADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYE 151 (293)
Q Consensus 78 ----~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~ 151 (293)
...+|+|++.||.++|||+..+.++..+..+ ..++|+.|--+| ++++|+.|++|++|+...+...+..+ +.+-
T Consensus 212 hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw 290 (480)
T KOG0271|consen 212 HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW 290 (480)
T ss_pred ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh
Confidence 3568999999999999999999988876644 567788887554 89999999999999987654433322 2333
Q ss_pred eeeeE-------------------------------------------------------EecCC---CEEEEecCCCCE
Q 022716 152 VNEIA-------------------------------------------------------WNMTG---EMFFLTTGNAGC 173 (293)
Q Consensus 152 ~~~v~-------------------------------------------------------~~~~~---~~~~~~~~~~~~ 173 (293)
|+.++ |+|.. ....+..|+.-+
T Consensus 291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV 370 (480)
T KOG0271|consen 291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV 370 (480)
T ss_pred eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence 33333 22211 111223344557
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-c
Q 022716 174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-C 252 (293)
Q Consensus 174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~ 252 (293)
..+.|+||++++|+++-|+.|++||.++++.+.+|.+|..+|..++|+.|.++|++||.|.++++|++++.+....++ +
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh 450 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH 450 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999999988877777 6
Q ss_pred CCCcceeEECCCCCeEEEEEcCC
Q 022716 253 RAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 253 ~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
...|-++.|+|||..+++||.|+
T Consensus 451 ~DEVf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 451 ADEVFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred CceEEEEEecCCCceeecCCCce
Confidence 77899999999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-42 Score=278.94 Aligned_cols=257 Identities=22% Similarity=0.331 Sum_probs=224.8
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeEEEEeC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVRLWDA 96 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i~vwd~ 96 (293)
|-..+|..+.||.+++.|||||.+|.+++|+... ......+.+|...+.++.|+|.. ...++||+.||++++|++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~----~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ----CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC----cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 4568999999999999999999999999999863 23445789999999999999983 567999999999999999
Q ss_pred CCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee-eeecccceeeeeEEecCCCE-----------
Q 022716 97 RSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGEM----------- 163 (293)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~----------- 163 (293)
.+...+..++.+ ..+..++|+|+|++|++++.|.+-++||++++..+ ....+..++.+++|+++|-+
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR 328 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence 988777766644 45678999999999999999999999999987654 44456778888888887754
Q ss_pred ----------EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEcc-CCCEEEEecC
Q 022716 164 ----------FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH-TGDYIASASE 232 (293)
Q Consensus 164 ----------~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~ 232 (293)
+++..|...|..++|+|+|..+|||+.|++++|||++....++++.+|.+-|+.|+|+| .|.+|+|+|.
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEccc
Confidence 33455667899999999999999999999999999999888999999999999999999 6889999999
Q ss_pred CCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 233 DLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 233 d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
|++++||...+..+++.+. +.+.|.+++.+|++..|++++.|+.++
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~K 455 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIK 455 (459)
T ss_pred CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceee
Confidence 9999999999999998875 566899999999999999999997443
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.7e-40 Score=281.63 Aligned_cols=244 Identities=27% Similarity=0.468 Sum_probs=212.1
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---------------------------CCceeEEEeeCCcCCeeEE
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------------------------HGKVKDIELRGHADSVDQL 72 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---------------------------~~~~~~~~~~~h~~~i~~~ 72 (293)
...++|..|++|+..||.|-.|-.|++|.+.+.. ........+.||.++|+..
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3689999999999999999999999999987411 0011223478999999999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce
Q 022716 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE 151 (293)
Q Consensus 73 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~ 151 (293)
.|+|+ .++|+|+++|+++|+|.+++..+.-.+..+.. +..+.|+|.|-++++++.|++-++|......|.+
T Consensus 458 sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR------- 529 (707)
T KOG0263|consen 458 SFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR------- 529 (707)
T ss_pred eeccc-ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh-------
Confidence 99997 57899999999999999999988877775544 5568999999999999999999999977655544
Q ss_pred eeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec
Q 022716 152 VNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231 (293)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 231 (293)
.+.++-+.+-|+.|||+..++++||.|.++++||..++..++.|.+|..+|.+++|||+|++||+|+
T Consensus 530 -------------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ 596 (707)
T KOG0263|consen 530 -------------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD 596 (707)
T ss_pred -------------hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc
Confidence 2445667788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 232 EDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 232 ~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.|+.|++||+..++.+.++ .+.+.|.++.||.+|+.||+||.|. .+|+|++++
T Consensus 597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn--------sV~lWD~~~ 650 (707)
T KOG0263|consen 597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN--------SVRLWDLTK 650 (707)
T ss_pred cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC--------eEEEEEchh
Confidence 9999999999999887765 4567899999999999999999984 677887765
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-39 Score=256.67 Aligned_cols=266 Identities=26% Similarity=0.414 Sum_probs=212.3
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
+...+.||..+|.|++|+|+|.+||||+.|.++|+||++.+ ......++|..-|.+++|+|++ ..|+||+.||+|
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----Tp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I 181 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----TPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSI 181 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC----CcceeecCCccEEEEEEECCCc-chhhccccCCeE
Confidence 34567899999999999999999999999999999999753 2334678999999999999985 689999999999
Q ss_pred EEEeCCCCeeeee-ee-ecCceEEEEEc-----CCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCE
Q 022716 92 RLWDARSGKCSQQ-AE-LSGENINITYK-----PDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 92 ~vwd~~~~~~~~~-~~-~~~~~~~~~~~-----~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 163 (293)
++||.+++++... +. +...+++++|. |..++|++++.||.+++||+.....+... .+-..+.++.|.-.+-+
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLI 261 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceE
Confidence 9999998876543 33 33456677875 56789999999999999999877665443 45667888988643321
Q ss_pred EE--------------------EecCCCCEEEEEE-----------CCCCCE-------------------------EEE
Q 022716 164 FF--------------------LTTGNAGCYCIAI-----------DPMGRY-------------------------FAV 187 (293)
Q Consensus 164 ~~--------------------~~~~~~~~~~~~~-----------~~~~~~-------------------------l~~ 187 (293)
+. +..|...+..+++ +|.++. +++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 11 1122233445544 344444 999
Q ss_pred ecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCC
Q 022716 188 GSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY 265 (293)
Q Consensus 188 gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~ 265 (293)
|++|.++.+|+... .+++..+++|..-|+.+.||||++++|++|=|..|++|+..+|+.+-.+. +-.+|-.++|+.|.
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS 421 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence 99999999999754 34677788999999999999999999999999999999999999887765 55678899999999
Q ss_pred CeEEEEEcCCCCCCCCcceEEEEee
Q 022716 266 NLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 266 ~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
.+|++|+.|. ++|+|.+
T Consensus 422 RLlVS~SkDs--------TLKvw~V 438 (480)
T KOG0271|consen 422 RLLVSGSKDS--------TLKVWDV 438 (480)
T ss_pred cEEEEcCCCc--------eEEEEEe
Confidence 9999999995 5566655
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-38 Score=241.06 Aligned_cols=250 Identities=21% Similarity=0.326 Sum_probs=211.3
Q ss_pred ceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCc-eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
...+.+|++.|+.++..+.+ ..+++++.|.++.+|++....... .....+.||+..|..+..+++ +++.+|++.|++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~ 86 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGT 86 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC-CceEEeccccce
Confidence 34678999999999999875 567899999999999997543221 223468899999999999986 578999999999
Q ss_pred EEEEeCCCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 91 VRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
+++||+.+++..+.+..+. .+.+++|+||.+++++|+.|+++++|+........... .++
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-------------------~~~ 147 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-------------------DSH 147 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-------------------CCC
Confidence 9999999998777776554 57899999999999999999999999976533221110 011
Q ss_pred CCCEEEEEECCC--CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716 170 NAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247 (293)
Q Consensus 170 ~~~~~~~~~~~~--~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~ 247 (293)
..-+.|+.|+|. ..++++++.|++|++||+++.+....+.+|...++.+++||||..+++|+.||.+.+||++.++.+
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence 456889999998 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 248 HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 248 ~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
..+.+...|++++|+|+--.|+.+-.. .+|||++|
T Consensus 228 ysl~a~~~v~sl~fspnrywL~~at~~---------sIkIwdl~ 262 (315)
T KOG0279|consen 228 YSLEAFDIVNSLCFSPNRYWLCAATAT---------SIKIWDLE 262 (315)
T ss_pred EeccCCCeEeeEEecCCceeEeeccCC---------ceEEEecc
Confidence 999999999999999988777777543 38888876
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.3e-37 Score=237.24 Aligned_cols=243 Identities=21% Similarity=0.349 Sum_probs=207.5
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC------------------------------------
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG------------------------------------ 55 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~------------------------------------ 55 (293)
..+.+.||.++|.++.|++|.+.|+++|.||.+.|||.......
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 45789999999999999999999999999999999996432100
Q ss_pred --------ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcC-CCCEEEE
Q 022716 56 --------KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKP-DGTHIAV 125 (293)
Q Consensus 56 --------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~ 125 (293)
......+.+|.+.+.+..|.++ ..|+|++.|.+..+||+++++....+. +.+.+.++.++| +++.+++
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 0112247899999999999763 468899999999999999999887776 446688999999 9999999
Q ss_pred EeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE
Q 022716 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 205 (293)
Q Consensus 126 ~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~ 205 (293)
|+.|+.-++||+|.....+. +..++..|.++.|+|+|.-+++|++|++.++||++....+
T Consensus 205 g~cD~~aklWD~R~~~c~qt--------------------F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQT--------------------FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL 264 (343)
T ss_pred cccccceeeeeccCcceeEe--------------------ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE
Confidence 99999999999998765553 2356677889999999999999999999999999988777
Q ss_pred EEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCC
Q 022716 206 RTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 206 ~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
..+... ..+|++++||..|++|.+|..|..+.+||.-.++.+..+ .|.++|.+|..+|||--+++||.|.+
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence 766543 358999999999999999999999999999999887776 46778999999999999999999953
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-37 Score=235.48 Aligned_cols=245 Identities=20% Similarity=0.322 Sum_probs=200.4
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.|+||...|..+..++||++.+++|.|+++|+||+... .....+.+|...|.++++++++ ..++||+.|.+|
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g----~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTi 129 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG----ESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTI 129 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC----cEEEEEEecCCceEEEEecCCC-ceeecCCCccee
Confidence 45778999999999999999999999999999999999853 2345688999999999999975 578999999999
Q ss_pred EEEeCCCCeeeeeee-e--cCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 92 RLWDARSGKCSQQAE-L--SGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~-~--~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
++||+... |...+. . .+-+.+++|+|+ ..+++.++.|+++++||+++.+..+. +
T Consensus 130 klwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~--------------------~ 188 (315)
T KOG0279|consen 130 KLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT--------------------F 188 (315)
T ss_pred eeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc--------------------c
Confidence 99998764 444433 2 345778999998 67899999999999999998765432 2
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
..+.+.+..++++|||...++|+.||.+.+||++.++.++++ ++...|.+++|+|+.-+|+ +..+..|+|||..++..
T Consensus 189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~-~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLC-AATATSIKIWDLESKAV 266 (315)
T ss_pred ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEe-eccCCceEEEeccchhh
Confidence 235667788999999999999999999999999999998877 5667999999999875554 44556699999999877
Q ss_pred EEEEecC---------C-CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 247 VHQIPCR---------A-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 247 ~~~~~~~---------~-~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+..+... . ...+++|+++|..|..|-.| +.+|+|++-+
T Consensus 267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td--------~~irv~qv~~ 314 (315)
T KOG0279|consen 267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD--------NVIRVWQVAK 314 (315)
T ss_pred hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC--------CcEEEEEeec
Confidence 6544211 1 13468999999999988776 5789998754
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.4e-37 Score=232.31 Aligned_cols=257 Identities=17% Similarity=0.250 Sum_probs=211.5
Q ss_pred CcCccccccc----ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC
Q 022716 3 ESSIPFKNLH----SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78 (293)
Q Consensus 3 ~~~~~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 78 (293)
++.|.||... .+++.-..+.|..|...||++.||+|+. ..||+||+.+.... ....+.+|.+.|.++.|..+
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--Pv~t~e~h~kNVtaVgF~~d- 94 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--PVATFEGHTKNVTAVGFQCD- 94 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--ceeEEeccCCceEEEEEeec-
Confidence 3457777654 4555434578999999999999998875 78999999865422 33568899999999999876
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~ 158 (293)
+..++|||+||+++|||++...+.+.+++..++.++..+|+...|++|..+|.|++||++.....++...
T Consensus 95 grWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP---------- 164 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP---------- 164 (311)
T ss_pred CeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC----------
Confidence 5799999999999999999988888888889999999999999999999999999999987655443221
Q ss_pred cCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC------CEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716 159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKLEWPVRTISFSHTGDYIASASE 232 (293)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~------~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 232 (293)
.....+.++.+.|+|..++.+...|+.++|++.. .+++.+++.|..-+..+.+||++++||++|.
T Consensus 165 ---------e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 165 ---------EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred ---------CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 1234577899999999999999999999999754 3556678889999999999999999999999
Q ss_pred CCcEEEEEcCCC-CEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 233 DLFIDISNVHTG-RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 233 d~~i~iw~~~~~-~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
|.+++||+..+. +.-+.+.. ...+..++||-++.||++|+.|...++|+.
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 999999999887 33344443 457999999999999999999854444443
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.8e-36 Score=231.02 Aligned_cols=262 Identities=23% Similarity=0.415 Sum_probs=211.3
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
-.+.||++.|..+.|+|+|..|||||.|..|.+|++...+. ....+.+|++.|..+.|+++ +..++|++.|.+++.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce---N~~~lkgHsgAVM~l~~~~d-~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE---NFWVLKGHSGAVMELHGMRD-GSHILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc---ceeeeccccceeEeeeeccC-CCEEEEecCCceEEE
Confidence 34679999999999999999999999999999999874332 22356799999999999986 468899999999999
Q ss_pred EeCCCCeeeeeeeecCceEEEEE-cCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeE---------------
Q 022716 94 WDARSGKCSQQAELSGENINITY-KPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA--------------- 156 (293)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~-~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~--------------- 156 (293)
||.++|++.+....+...+...- ..-|. .+.+++.|+++++||+|++.+.+......++.++.
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 99999999888777776654332 22233 45667779999999999877776664444555554
Q ss_pred ----EecC--CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC----EEEEEeeccC----CCeeEEEEcc
Q 022716 157 ----WNMT--GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKLE----WPVRTISFSH 222 (293)
Q Consensus 157 ----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~----~~~~~~~~~~----~~v~~l~~sp 222 (293)
|++. .-...+..+.+.++.++.+|+|.++.+-+.|+++++||.+.. +++..+.+|. .-...++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 4442 123445666788999999999999999999999999998753 4566666542 2456688999
Q ss_pred CCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 223 TGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 223 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
+++.+..|+.|..+++||....+.+.+++. ...|+++.|+|...+|.+++.|+++|.
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999988888888875 457999999999999999999998874
No 11
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-36 Score=241.09 Aligned_cols=274 Identities=25% Similarity=0.372 Sum_probs=217.6
Q ss_pred CcccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEE
Q 022716 5 SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT 84 (293)
Q Consensus 5 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s 84 (293)
.+|+ ...+.+..|.+.|.-+.||++|++||||+.|.+..+|++..... ......+.+|..+|..+.|+|++ .+|++
T Consensus 211 qip~--qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDd-ryLla 286 (519)
T KOG0293|consen 211 QIPS--QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDD-RYLLA 286 (519)
T ss_pred cCCc--hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCC-CeEEe
Confidence 3555 34455789999999999999999999999999999999865332 22334678999999999999985 57889
Q ss_pred EeCCCeEEEEeCCCCeeeeeeeec--CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCC
Q 022716 85 ASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTG 161 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~ 161 (293)
|+.|..+++||+.+|.+...+... ..+.+++|.|||..+++|+.|+++..||+.....-.=. .-...+.+++..++|
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred cCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence 999999999999999987776544 56789999999999999999999999998754311000 001346667777777
Q ss_pred CEEEEec--------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC--eeEEE
Q 022716 162 EMFFLTT--------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--VRTIS 219 (293)
Q Consensus 162 ~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~--v~~l~ 219 (293)
+.+.... .+.++++..++.+++++++.-.+..+++||++....++.+.+|... +-.-+
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 6655433 2356889999999999999999999999999988888888888643 33334
Q ss_pred Ec-cCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEEEee
Q 022716 220 FS-HTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 220 ~s-p~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
|. .+..++|+||+|+.|+||+..+|+.+-.+.. ...||+|+|+|.. .+||+||+| |++|||..
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD--------gtIRIWg~ 512 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD--------GTIRIWGP 512 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC--------CeEEEecC
Confidence 55 3558999999999999999999999988865 4569999999966 689999988 46666654
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.2e-36 Score=257.62 Aligned_cols=207 Identities=25% Similarity=0.407 Sum_probs=184.8
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.||.++|..+.|+|+.++|+++|.|++||+|.++... ......||..+|.++.|+|.+ -+|+|||.|++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s----~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tA 517 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS----CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTA 517 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccce----eEEEecCCCcceeeEEecCCc-eEEEecCCCcee
Confidence 356689999999999999999999999999999999998642 334577999999999999974 689999999999
Q ss_pred EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
++|........+.+.. -+.+-|+.|+|+..++++|+.|.++++||..++..++. +..|.
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi--------------------F~GH~ 577 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI--------------------FTGHK 577 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE--------------------ecCCC
Confidence 9999887776666553 35567899999999999999999999999988765442 34578
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
+++.+++++|+|++|++|+.||.|.+||+..+..+..+.+|...|.++.||.+|..||+|+.|+.|++||+..
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999865
No 13
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.7e-37 Score=251.24 Aligned_cols=266 Identities=21% Similarity=0.353 Sum_probs=219.9
Q ss_pred ccceeecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
..+..+.||+..|+++.|.| .+.+|++|+.|+.|+||++... ......+.+|+.+|.+++|+.++ ..++|+|.|+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~ 280 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDR 280 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccC-Ceeeeeecce
Confidence 45677899999999999999 8999999999999999999752 22234678999999999999875 4677999999
Q ss_pred eEEEEeCCCCeeeeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeeccc-ceeeeeEEecCCCEEEEe
Q 022716 90 TVRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLT 167 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 167 (293)
.+++||+.+|++...+.....+.++.|.|++ +.+++|+.|+.|+.||+|+.+.+++.... ..+..+.|-+.+..++.+
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999999999999999999999998 88999999999999999998877665432 345666666666665554
Q ss_pred cCC----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE---EEEeeccC--CCeeEEEE
Q 022716 168 TGN----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFTKLE--WPVRTISF 220 (293)
Q Consensus 168 ~~~----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~---~~~~~~~~--~~v~~l~~ 220 (293)
+.+ ..+.|+..+|++++++.-+.|+.|.+|.+...-+ -+.+++|. +--..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 443 2355889999999999999999999998754322 23466665 34566899
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC-CCcceeEECCCC-CeEEEEEcCCCCCCC
Q 022716 221 SHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKY-NLLAYAGDDKNKYQA 280 (293)
Q Consensus 221 sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-~~i~~~~~sp~~-~~la~~~~d~~~~~~ 280 (293)
||||.+|++|+.||.+.+||.++.+.+..++.+ .++..+.|+|.. +.+|++|.|+.+++|
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEec
Confidence 999999999999999999999999988888765 789999999965 789999998655554
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-34 Score=236.23 Aligned_cols=260 Identities=22% Similarity=0.334 Sum_probs=194.5
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee---CCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
+-.|.+-|.|+.|+|||.+++|++.||++.+||=.+.+ ....+. +|++.|++++|+|+. ..++|++.|.+++
T Consensus 186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIK 260 (603)
T ss_pred ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEE
Confidence 45688999999999999999999999999999854321 222333 899999999999974 6788999999999
Q ss_pred EEeCCCCeeeeeeeecC--------------------------------------------ceEEEEEcCCCCEEEEEeC
Q 022716 93 LWDARSGKCSQQAELSG--------------------------------------------ENINITYKPDGTHIAVGNR 128 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~l~~~~~ 128 (293)
|||+.+.++...+.... .+.++..+|+++++++|+.
T Consensus 261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSY 340 (603)
T ss_pred EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeecc
Confidence 99998776544322111 1345778899999999999
Q ss_pred CCeEEEEEccccceeeee--ccc-----------ceeeeeEEec-------------------------------CCCEE
Q 022716 129 DDELTILDVRKFKPIHRR--KFG-----------YEVNEIAWNM-------------------------------TGEMF 164 (293)
Q Consensus 129 d~~i~l~d~~~~~~~~~~--~~~-----------~~~~~v~~~~-------------------------------~~~~~ 164 (293)
||.|.-||..+...-+.. .+. .++..+.|+. ++...
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a 420 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA 420 (603)
T ss_pred CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence 999999998654432211 011 1122222211 11111
Q ss_pred EEecCC-----------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE--EEeeccCCCeeEEEEccCCC
Q 022716 165 FLTTGN-----------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV--RTFTKLEWPVRTISFSHTGD 225 (293)
Q Consensus 165 ~~~~~~-----------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~ 225 (293)
.+++.. -...+++++|++.++++|+.|++|++|.+...+.. .....|..+|+.++||||+.
T Consensus 421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred EEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence 111111 12357899999999999999999999999765432 24567999999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCCEEE-EEe-cCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716 226 YIASASEDLFIDISNVHTGRTVH-QIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~~~~~~-~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
|||+|...+.+.+||+++.+... .+. |..+|++++|+|+..++|+||.|.++.+|
T Consensus 501 yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 99999999999999999987632 333 56789999999999999999999766543
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-34 Score=235.84 Aligned_cols=251 Identities=29% Similarity=0.476 Sum_probs=218.9
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
..|++|+|+.+|..||+|+.||.+|+|+.... ....+..|+++|.++.|+.+ +.+|++++-|+++.+||..++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-----l~~tl~~HkgPI~slKWnk~-G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-----LISTLGQHKGPIFSLKWNKK-GTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCch-----hhhhhhccCCceEEEEEcCC-CCEEEeccCCccEEEEeccCce
Confidence 57999999999999999999999999997632 22357789999999999986 4789999999999999999999
Q ss_pred eeeeeeecCce-EEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCC--------
Q 022716 101 CSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN-------- 170 (293)
Q Consensus 101 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~-------- 170 (293)
..+.++++..+ ..+.|-.+ ..+++.+.|+.|+++.+....|..... +..+|..+.|+|.+.++.-.+.+
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 88888877766 66777544 578899999999999998888877654 66789999999998877654432
Q ss_pred -------------CCEEEEEECCCC---------CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716 171 -------------AGCYCIAIDPMG---------RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 171 -------------~~~~~~~~~~~~---------~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 228 (293)
..++.+.++|.| ..+++++.|++|++||+..+.++.+|..|..||.+|+|+|+|+|+|
T Consensus 389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylA 468 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLA 468 (524)
T ss_pred CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEE
Confidence 347788888854 4699999999999999999999999999999999999999999999
Q ss_pred EecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 229 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
+|+.|+.|.||++++++..+.+.....|..|.|+.+|++|..+-.|+.+.
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCce
Confidence 99999999999999999999999888999999999999999888876443
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.6e-37 Score=245.68 Aligned_cols=205 Identities=24% Similarity=0.412 Sum_probs=182.4
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
.+.+.+.||...|..++|+|+|++|+|++.|.+-++||+..+. ..+...||...|.+++|+|++ .+++|||.|..
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~----ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~ 326 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS----ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSL 326 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch----hhHhhcccccccceeEecCCC-ceeeccCccch
Confidence 3567899999999999999999999999999999999998542 223467999999999999975 69999999999
Q ss_pred EEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
-+|||+++++++..+..+ .++..+.|+|+|-.+++|+.|+++++||+|...++. .+..|
T Consensus 327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly--------------------~ipAH 386 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY--------------------TIPAH 386 (459)
T ss_pred hheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce--------------------ecccc
Confidence 999999999998877654 567799999999999999999999999998765433 33445
Q ss_pred CCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 170 NAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 170 ~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
..-++.+.+.| .|.+|++++.|++++||..+++.+++++.+|+..|-+++++|++++++|++.|.++++|.
T Consensus 387 ~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 387 SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 55677788998 689999999999999999999999999999999999999999999999999999999995
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-34 Score=235.44 Aligned_cols=270 Identities=23% Similarity=0.348 Sum_probs=219.3
Q ss_pred CccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEe------eC----CcCCeeEEEEcCCCCCEEEEEe
Q 022716 18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIEL------RG----HADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~------~~----h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
.|+.+|.+++|+|... .+++|+.|-+.++|++..+.........+ .+ .+..|++++|+.+ +.+|++|+
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~LatG~ 254 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLATGS 254 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC-CCeEEEee
Confidence 4999999999999877 88999999999999987522111111111 11 2356999999976 57999999
Q ss_pred CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccccee-eeeEEecC-----
Q 022716 87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-NEIAWNMT----- 160 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~-~~v~~~~~----- 160 (293)
+||.+++|+...+.....-.+.+++.++.|..+|.++++++-|+++.+||..+....+...+.... -+|.|-..
T Consensus 255 ~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~t 334 (524)
T KOG0273|consen 255 EDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFAT 334 (524)
T ss_pred cCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEee
Confidence 999999999866544444457788999999999999999999999999999777766665544333 44555322
Q ss_pred ---------------CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC-
Q 022716 161 ---------------GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG- 224 (293)
Q Consensus 161 ---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~- 224 (293)
.+...+..|...+.++.|+|.+.+|+++|.|++++||...+....+.+..|...|..+.|+|+|
T Consensus 335 s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 2223344577889999999999999999999999999999988889999999999999999976
Q ss_pred --------CEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEE
Q 022716 225 --------DYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 288 (293)
Q Consensus 225 --------~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~ 288 (293)
..+++++.|++|++||+..+.+++.+ .++.+|-+|+|+|+|.++|+|+.|+-+.+|+--.-++|
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV 487 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee
Confidence 47899999999999999999999987 78889999999999999999999998888776544444
No 18
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-33 Score=213.28 Aligned_cols=252 Identities=20% Similarity=0.290 Sum_probs=208.8
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
.++||..+++.+.|+.+|++|.|++.|.+.-+|--... ...-.+.||.+.|+++...-+ ...++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG----erlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----ERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC----ceeeeecCCCceEEEEEecCC-cceeeeccccceeEEE
Confidence 46799999999999999999999999999999954321 123367899999999998764 5789999999999999
Q ss_pred eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-----CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNR-----DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
|+.+|+++..++....+..+.|+++|++++..+. .+.|.++|++...... ....+.+.+.+.
T Consensus 80 Dv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~-------------~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 80 DVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI-------------DSEEPYLKIPTP 146 (327)
T ss_pred EcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh-------------cccCceEEecCC
Confidence 9999999999999999999999999998887763 4578889987543211 112234556667
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 248 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~ 248 (293)
++.++.+-|.|.+.++++|.+||.|.+||++++ +.+.+...|...|+.++++|+..+++|+|.|.+.++||+.+...++
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence 788889999999999999999999999999997 5556667888999999999999999999999999999998765554
Q ss_pred EEecC--------------------------------------------------------CCcceeEECCCCCeEEEEE
Q 022716 249 QIPCR--------------------------------------------------------AAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 249 ~~~~~--------------------------------------------------------~~i~~~~~sp~~~~la~~~ 272 (293)
++.+. +|||+|+|||+|+-+++||
T Consensus 227 ty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 227 TYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred EeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 33211 5788999999999999999
Q ss_pred cCCCCCCCCcceEEEEeeec
Q 022716 273 DDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 273 ~d~~~~~~~~~~~~~~~~~~ 292 (293)
.| |.+||..||.
T Consensus 307 ED--------G~VR~h~Fd~ 318 (327)
T KOG0643|consen 307 ED--------GYVRLHHFDS 318 (327)
T ss_pred CC--------ceEEEEEecc
Confidence 77 5778887764
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=247.07 Aligned_cols=252 Identities=25% Similarity=0.457 Sum_probs=209.0
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|...|.+++|+|+|+++++|+.|+++||||+... ......+.+|...|++++|+|.+ ++++||+.|++|
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTV 270 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcE
Confidence 45666899999999999999999999999999999999432 23345678999999999999987 899999999999
Q ss_pred EEEeCCCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee--eeecccceeeeeEEecCCCEEEEec
Q 022716 92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--HRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
++||++++++...+..+. .+.+++|++++.++++++.|+.+++||+.+.... ....- ...
T Consensus 271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-----------------~~~ 333 (456)
T KOG0266|consen 271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-----------------AEN 333 (456)
T ss_pred EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-----------------CCC
Confidence 999999999988887554 6677999999999999999999999999886622 21110 001
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC---eeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP---VRTISFSHTGDYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~---v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~ 245 (293)
.. .+.++.|+|++.++++++.|+.+++||+..+..+..+.+|... +.+..+++.++++++|+.|+.|++|+..++.
T Consensus 334 ~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 334 SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 12 5788999999999999999999999999999989898888764 3344557889999999999999999999977
Q ss_pred EEEEEecC--CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 246 TVHQIPCR--AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 246 ~~~~~~~~--~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.+..+..+ ..+..+.|+|..+++++++.+.+ ..+++|..+
T Consensus 413 ~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d------~~~~~w~~~ 454 (456)
T KOG0266|consen 413 ILQRLEGHSKAAVSDLSSHPTENLIASSSFEGD------GLIRLWKYD 454 (456)
T ss_pred hhhhhcCCCCCceeccccCCCcCeeeecCcCCC------ceEEEecCC
Confidence 76666544 66889999999999999995432 446777654
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=241.90 Aligned_cols=248 Identities=21% Similarity=0.360 Sum_probs=204.5
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
.||...+.+++++|||.++|||+.||+|||||..+ ......+..|+..|+.+.|+.. ++.++|++-||+|+.||+
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S----gfC~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS----GFCFVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccC----ceEEEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeee
Confidence 48999999999999999999999999999999864 2345678899999999999876 568899999999999999
Q ss_pred CCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCCC-eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 97 RSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 97 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~-~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
...+.-+++..+.+ ..+++..|.|..+.+|+.|. .|.+|++++++.+. .+..|++++
T Consensus 422 kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD--------------------iLsGHEgPV 481 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD--------------------ILSGHEGPV 481 (893)
T ss_pred cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee--------------------hhcCCCCcc
Confidence 99887777665544 45788899999999999886 79999998876543 355788899
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec
Q 022716 174 YCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 252 (293)
Q Consensus 174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~ 252 (293)
.+++|+|++..|++||.|++|++||+-.. ..+.++ .+...+.+++|.|+|+.||.+..||.|.+||.+.......+..
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 99999999999999999999999998443 234444 4556899999999999999999999999999987655422211
Q ss_pred ---------------------CCCcceeEECCCCCeEEEEEcCCCCCC--CCcce-EEEEee
Q 022716 253 ---------------------RAAMNSVEWNPKYNLLAYAGDDKNKYQ--ADEGV-FRIYGF 290 (293)
Q Consensus 253 ---------------------~~~i~~~~~sp~~~~la~~~~d~~~~~--~~~~~-~~~~~~ 290 (293)
....+.|.+|+||..|.+||..+++++ ..+++ +|.|++
T Consensus 561 rkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 561 RKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred hhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEe
Confidence 135678999999999999999998887 33433 477765
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.4e-32 Score=223.52 Aligned_cols=260 Identities=28% Similarity=0.460 Sum_probs=214.5
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
+.+.+|.++|.+++|+|+++.|++++.||.+++|++.... ....+..|...+..+.|.|++ +.+++++.|+.+++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRL 77 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEE
Confidence 4577999999999999999999999999999999987532 223466888889999999874 68889999999999
Q ss_pred EeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEec---
Q 022716 94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT--- 168 (293)
Q Consensus 94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~--- 168 (293)
||+..++....+..+ ..+.++.|.|+++.+++++.++.+.+||+++.+...... +...+..+.|++.+..+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 999887655555433 467789999998888888889999999998766655544 445678888888655544433
Q ss_pred ------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716 169 ------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 169 ------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 230 (293)
+...+.+++++|+++.+++++.|+.|++||++.+..+..+..|..++.+++|+|++.+++++
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 12356789999999999999999999999999888888887888899999999999999999
Q ss_pred cCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 231 SEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 231 s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
+.|+.+++|+..+++.+..+. +...+.+++|+|++++|++++.|+.+.
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 999999999999888776665 345799999999999999999885333
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=208.73 Aligned_cols=255 Identities=27% Similarity=0.455 Sum_probs=198.9
Q ss_pred cceeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 12 HSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
..+.+.||++.+..++|+|- |..|||+|.|+.||+|++.....-.....--.+|+..|..++|+|.+ ++|++|+.|.+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t 84 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDAT 84 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccce
Confidence 45678899999999999998 88999999999999999874221111112234799999999999975 69999999999
Q ss_pred EEEEeCCCC--eeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716 91 VRLWDARSG--KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (293)
Q Consensus 91 i~vwd~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 167 (293)
+.||.-..+ +++..++. ..++.+++|+++|.+|++++.|..+-+|.+...... ++ ...+.
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf-------ec----------~aVL~ 147 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF-------EC----------IAVLQ 147 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE-------EE----------Eeeec
Confidence 999976555 45666664 456778999999999999999999999987632211 11 01233
Q ss_pred cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC---CCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC-
Q 022716 168 TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS---EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT- 243 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~- 243 (293)
.|...+.-+.|||...+|++++-|++|++|+-. ...+..++.+|...|.+++|+|.|..|+++++|++++||-..+
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 445556677888999999999999999999765 4678899999999999999999999999999999999997211
Q ss_pred ------CC------------------EEEEE-------------------ecCCCcceeEECCC-CCeEEEEEcCCCCCC
Q 022716 244 ------GR------------------TVHQI-------------------PCRAAMNSVEWNPK-YNLLAYAGDDKNKYQ 279 (293)
Q Consensus 244 ------~~------------------~~~~~-------------------~~~~~i~~~~~sp~-~~~la~~~~d~~~~~ 279 (293)
+. .+..+ .+...||+|.|+|. .++|+++|+|
T Consensus 228 ~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD----- 302 (312)
T KOG0645|consen 228 LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD----- 302 (312)
T ss_pred cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC-----
Confidence 11 01111 12246899999996 6899999987
Q ss_pred CCcceEEEEeeec
Q 022716 280 ADEGVFRIYGFEN 292 (293)
Q Consensus 280 ~~~~~~~~~~~~~ 292 (293)
|.+|+|.++.
T Consensus 303 ---G~v~~W~l~~ 312 (312)
T KOG0645|consen 303 ---GIVNFWELEI 312 (312)
T ss_pred ---ceEEEEEecC
Confidence 6889998874
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=228.31 Aligned_cols=256 Identities=23% Similarity=0.388 Sum_probs=212.5
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.||.+.|.+++|+..|++||+++.|=.+++||++.. ..+. ..+.+|.-.|.++.|-|.+ +.++|++.|.+|
T Consensus 142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~ti 217 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTI 217 (406)
T ss_pred hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHH--HHhcCcccceeeEEEEecC-Ceeeecccccce
Confidence 35667899999999999999999999999999999998742 1111 2356899999999999985 789999999999
Q ss_pred EEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee-ecccceeeeeEEecCCCEEEEecC
Q 022716 92 RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
+.|++.++-|+..+..+.. +..++...||..+++++.|.++++|-+.+...... +.+.+.+..++|.|....--+...
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~a 297 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEA 297 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhc
Confidence 9999999999998875544 55678889999999999999999999988754433 346778888999776432111110
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 249 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~ 249 (293)
.+ -...+.++.+++.|++|++||+.++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||++.+++.+.
T Consensus 298 t~------~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 298 TG------STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred cC------CCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 00 001457899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EecCC-CcceeEECCCCCeEEEEEcCCCC
Q 022716 250 IPCRA-AMNSVEWNPKYNLLAYAGDDKNK 277 (293)
Q Consensus 250 ~~~~~-~i~~~~~sp~~~~la~~~~d~~~ 277 (293)
+..+. =+++++|+.+-.++++|+-|...
T Consensus 372 ~~ah~hfvt~lDfh~~~p~VvTGsVdqt~ 400 (406)
T KOG0295|consen 372 LEAHEHFVTSLDFHKTAPYVVTGSVDQTV 400 (406)
T ss_pred cCCCcceeEEEecCCCCceEEecccccee
Confidence 76544 47899999999999999988633
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.6e-32 Score=253.61 Aligned_cols=265 Identities=17% Similarity=0.254 Sum_probs=204.0
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC----CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH----GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~----~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
+..|...|.+++|+|+|++||||+.|++|+||++..... .......+ .+...+.+++|++.....|++++.|+.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 446899999999999999999999999999999753110 00111223 2346789999988766789999999999
Q ss_pred EEEeCCCCeeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec-CCCEEE---
Q 022716 92 RLWDARSGKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM-TGEMFF--- 165 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~--- 165 (293)
++||+.+++....+. +...+.+++|+| ++.+|++|+.|+++++||+++............+..+.|.+ .+..+.
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 999999887766664 445678999996 78899999999999999998877665554444555566643 232222
Q ss_pred -------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC------CEEEEEeeccCCCeeEEEE
Q 022716 166 -------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKLEWPVRTISF 220 (293)
Q Consensus 166 -------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~------~~~~~~~~~~~~~v~~l~~ 220 (293)
+..+...+.++.|. ++.++++++.|++|++||+.. ...+.++.+|...+..++|
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 22344567788886 688999999999999999874 3567788899999999999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCCEEEEE--------------ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEE
Q 022716 221 SHTGDYIASASEDLFIDISNVHTGRTVHQI--------------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFR 286 (293)
Q Consensus 221 sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~--------------~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~ 286 (293)
+|++++|++|+.|+.|++|+......+..+ .+...|++++|+|++++|++|+.| |.+|
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d--------G~I~ 788 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST--------GNIK 788 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC--------CcEE
Confidence 999999999999999999998765433211 112358999999999999999987 4666
Q ss_pred EEee
Q 022716 287 IYGF 290 (293)
Q Consensus 287 ~~~~ 290 (293)
||++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 7764
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8e-33 Score=237.31 Aligned_cols=239 Identities=24% Similarity=0.413 Sum_probs=206.9
Q ss_pred cccEEEEEECCCCCeEEEEeCC-CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~d-g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
..+|..++|+..|++||.|+.. |++-||+..+ .....+..+|...+++++++|++ .+++||+.||.|+|||.++
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----EsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----ESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeec----cceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC
Confidence 3589999999999999998875 8999999864 33445678999999999999974 6999999999999999999
Q ss_pred Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716 99 GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177 (293)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
+-|..++. +...+..+.|+..|+.+++.+-||+++.||+..+...+....+.++ ...|++
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~-------------------Qfscva 442 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI-------------------QFSCVA 442 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce-------------------eeeEEE
Confidence 99988775 5567888999999999999999999999999887766654433222 235899
Q ss_pred ECCCCCEEEEecCCC-cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC-CEEEEEecCCC
Q 022716 178 IDPMGRYFAVGSADS-LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRAA 255 (293)
Q Consensus 178 ~~~~~~~l~~gs~d~-~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~ 255 (293)
.+|.|..+..|+.|. .|.+|++++|..+..+.+|+.||.+++|+|.+..||++|-|.+|++||+-.. ..+..+.....
T Consensus 443 vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd 522 (893)
T KOG0291|consen 443 VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD 522 (893)
T ss_pred EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc
Confidence 999999999998876 5999999999999999999999999999999999999999999999998765 45667777788
Q ss_pred cceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 256 MNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 256 i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
+..++|+|+|..||++..|+.+.+|+-
T Consensus 523 vl~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 523 VLAVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred eeEEEEcCCCCeEEEEEecceEEEEEh
Confidence 999999999999999999976666554
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=235.75 Aligned_cols=237 Identities=19% Similarity=0.350 Sum_probs=198.0
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
+.+|..+.|.|+|+.|++|++-|...+|+...- .-...+.+|..+|.++.|+++ +..++||..+|.|++|+....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f----nFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF----NFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee----eHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchh
Confidence 458999999999999999999999999986421 112246789999999999986 578999999999999998766
Q ss_pred eeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
........+ ..+.+++|+|++..+++++.||+|++||.+..++-+. +..+.-.+.+++|
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--------------------L~GHgwdVksvdW 230 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--------------------LRGHGWDVKSVDW 230 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--------------------eccCCCCcceecc
Confidence 543333344 5678999999999999999999999999876543222 2334445667888
Q ss_pred CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcc
Q 022716 179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMN 257 (293)
Q Consensus 179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~ 257 (293)
||...++++|+.|+.|++||.+++.++.++.+|...|.++.|+|++++|+|+|.|..++++|+.+-+.+..+. ++..++
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT 310 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence 9999999999999999999999999999999999999999999999999999999999999998766666654 667799
Q ss_pred eeEECC-CCCeEEEEEcCCCCCCCC
Q 022716 258 SVEWNP-KYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 258 ~~~~sp-~~~~la~~~~d~~~~~~~ 281 (293)
+++||| ..++|.+||.|+.+..|.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred eeccccccccceeeccCCCceEEEe
Confidence 999999 558999999997665543
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.1e-35 Score=234.85 Aligned_cols=239 Identities=21% Similarity=0.333 Sum_probs=199.0
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
+..|..+|.++.|+++|.+++||+.+|.||+|+...+.. . .....|...|.+++|+|.+ ..|+|++.|++|+|||
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV---k-~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV---K-IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWD 208 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh---H-HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEe
Confidence 358999999999999999999999999999998764321 1 1123455889999999975 5788999999999999
Q ss_pred CCCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 96 ARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
....+....+..++ .+.+++|+|....+++++.|+.|++||.++..++... ..+...+.
T Consensus 209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKntVl 268 (464)
T KOG0284|consen 209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKNTVL 268 (464)
T ss_pred ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh--------------------hhccceEE
Confidence 98776555554333 5778999999999999999999999999987765432 22344567
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEEE--e
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQI--P 251 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~~--~ 251 (293)
.+.|.|++++|+++|.|..++++|++.++.+..+++|+..|.++.|+|-. .+|++|+.|+.|..|.+...+.+..+ .
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~A 348 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPA 348 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcc
Confidence 88899999999999999999999999888888999999999999999965 57899999999999999865555544 3
Q ss_pred cCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 252 CRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 252 ~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
+...|.+++|||-|-+||+|+.|++.+.
T Consensus 349 Hd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 349 HDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred cccceeeeeccccceeEeecCCCcceee
Confidence 5678999999999999999999875544
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-32 Score=207.83 Aligned_cols=229 Identities=21% Similarity=0.381 Sum_probs=184.9
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
+...|.+|.+.|+++.|..+|+++.|||.||++||||+..... ...-.|..+|+++..+|... -|++|..+|.|
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQt-eLis~dqsg~i 148 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNI 148 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcc-eEEeecCCCcE
Confidence 5678899999999999999999999999999999999975221 12336789999999999754 56789999999
Q ss_pred EEEeCCCCeeeeee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 92 RLWDARSGKCSQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 92 ~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
++||+....|.... +....+.++...|||+.++.+...|++.+|++-+......+. +..-+..+
T Consensus 149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~--------------P~~k~~ah 214 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE--------------PVHKFQAH 214 (311)
T ss_pred EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce--------------Ehhheecc
Confidence 99999887654432 233456688999999999999999999999986632211111 01113456
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 248 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~ 248 (293)
+..+..+-++|++++||++++|.+++||+.+.+ +.-..+++|...+..++||.||+||+||+.|+.+++|++..+++++
T Consensus 215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 677888899999999999999999999999988 4445678899999999999999999999999999999999999999
Q ss_pred EEecC-CCcceeE
Q 022716 249 QIPCR-AAMNSVE 260 (293)
Q Consensus 249 ~~~~~-~~i~~~~ 260 (293)
+++.+ ....+++
T Consensus 295 qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 295 QYQGHHKAAVCVA 307 (311)
T ss_pred ecCCcccccEEEE
Confidence 88643 3334443
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=222.71 Aligned_cols=242 Identities=24% Similarity=0.352 Sum_probs=206.4
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+.+.||.+.|.|+++.|-..+|+||+.|++++|||+++. ...+.+.||...|..+++++. .-+++++++|++|+
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VK 218 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVK 218 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeeccc-CceEEEecCCCeeE
Confidence 3668899999999999999999999999999999999853 344678899999999999986 45899999999999
Q ss_pred EEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
.||+...+.++.+..+ ..+.+++..|.-..+++|+.|.++++||+|+..++.. +..+..
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~--------------------l~GH~~ 278 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV--------------------LSGHTN 278 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEE--------------------ecCCCC
Confidence 9999888877665533 4578899999999999999999999999998665543 345666
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 251 (293)
++..+.+.|.+..+++||.|++|++||++.++.+.++..|...|.+++.+|.-..+|+++.|. |+-|++..|..+..+.
T Consensus 279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nls 357 (460)
T KOG0285|consen 279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLS 357 (460)
T ss_pred cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccc
Confidence 777888888899999999999999999999999999999999999999999999999999886 6999999988777765
Q ss_pred cC-CCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 252 CR-AAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 252 ~~-~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.+ .-|++++-+.|+ ++++|++++.++.|+
T Consensus 358 gh~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 358 GHNAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred cccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 44 457888888766 778888776655544
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=240.31 Aligned_cols=252 Identities=22% Similarity=0.364 Sum_probs=211.0
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
...+.+.||...|.++....+|.+|+|||.|+++++|.++.+...........+|++.|.+++.+..+..+|+|+|.|++
T Consensus 356 ~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t 435 (775)
T KOG0319|consen 356 SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT 435 (775)
T ss_pred CceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce
Confidence 34456789999999999777889999999999999999865443333333456899999999998777789999999999
Q ss_pred EEEEeCCCCeee---------eeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716 91 VRLWDARSGKCS---------QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 91 i~vwd~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
+++|++...+.. .... +...+.+++++|+++.+++|+.|.+.++|++++.....
T Consensus 436 lK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~---------------- 499 (775)
T KOG0319|consen 436 LKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG---------------- 499 (775)
T ss_pred EEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE----------------
Confidence 999998762211 0111 23346689999999999999999999999998544322
Q ss_pred CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
.+..|.-++.|+.|+|.+..++++|.|++|+||.+.++.++++|.+|...|.-+.|-.+|++|++++.||.+++|+
T Consensus 500 ----vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 500 ----VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred ----EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 2445666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 241 VHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 241 ~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
+++..++..+. |..+|.+++-+|+..++++||.|+.+..|..
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 99999988886 5668999999999999999999975554443
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.4e-32 Score=236.03 Aligned_cols=253 Identities=25% Similarity=0.431 Sum_probs=205.9
Q ss_pred ccccccceeecCc-cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716 7 PFKNLHSREYTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85 (293)
Q Consensus 7 ~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~ 85 (293)
+++.. .+.+.+| ...|.++.|+++|+.|++++.|+.+++|+...... .....+.+|...|..++|+|++ .+++++
T Consensus 146 ~~~~~-~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~-~~l~s~ 221 (456)
T KOG0266|consen 146 RVFSL-EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDG-SYLLSG 221 (456)
T ss_pred cccee-eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCC-cEEEEe
Confidence 33344 4455455 78999999999999999999999999999853321 1223457899999999999975 589999
Q ss_pred eCCCeEEEEeC-CCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716 86 SGDKTVRLWDA-RSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 86 ~~d~~i~vwd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
+.|+++++||+ ..+.++..+. +...+.+++|+|+|+.+++|+.|++|++||+++.++...
T Consensus 222 s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~------------------ 283 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK------------------ 283 (456)
T ss_pred cCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe------------------
Confidence 99999999999 5557777765 455678999999999999999999999999998665543
Q ss_pred EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE--EEEEeeccCCC--eeEEEEccCCCEEEEecCCCcEEEE
Q 022716 164 FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML--CVRTFTKLEWP--VRTISFSHTGDYIASASEDLFIDIS 239 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~~~~~~~~--v~~l~~sp~~~~l~s~s~d~~i~iw 239 (293)
+..+...+.+++|+++++++++++.|+.|++||+.++. +.+.+..+..+ +..++|+|++.++++++.|+.+++|
T Consensus 284 --l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 284 --LKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred --eeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 34567788999999999999999999999999999998 56777776655 9999999999999999999999999
Q ss_pred EcCCCCEEEEEecC-C---CcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716 240 NVHTGRTVHQIPCR-A---AMNSVEWNPKYNLLAYAGDDKNKYQADEG 283 (293)
Q Consensus 240 ~~~~~~~~~~~~~~-~---~i~~~~~sp~~~~la~~~~d~~~~~~~~~ 283 (293)
|+..++.+..+..+ . .+.+...++.+.++.+|+.|+.+++|+-.
T Consensus 362 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 362 DLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 99998877665432 2 23344557889999999999766655543
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-33 Score=222.22 Aligned_cols=253 Identities=25% Similarity=0.393 Sum_probs=208.8
Q ss_pred cccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716 6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85 (293)
Q Consensus 6 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~ 85 (293)
||.+++ .+.+.||..+|+.+-|.|+-...++++.|++|++||...... ...++||.+.+.++.|+.. +.+++++
T Consensus 95 ipRp~l-~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~----e~~LrGHt~sv~di~~~a~-Gk~l~tc 168 (406)
T KOG0295|consen 95 IPRPNL-VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL----ERSLRGHTDSVFDISFDAS-GKYLATC 168 (406)
T ss_pred CCCCCc-hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh----hhhhhccccceeEEEEecC-ccEEEec
Confidence 444333 234668999999999999999999999999999999976432 3358899999999999876 4799999
Q ss_pred eCCCeEEEEeCCC-CeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716 86 SGDKTVRLWDARS-GKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 86 ~~d~~i~vwd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
+.|-.+++||..+ .+|......+.+ +.++.|-|.|.++++++.|.+|+.|++.+...+....
T Consensus 169 SsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~---------------- 232 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP---------------- 232 (406)
T ss_pred CCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc----------------
Confidence 9999999999876 345554444444 4568899999999999999999999998876655432
Q ss_pred EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC---------------CCEEE
Q 022716 164 FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT---------------GDYIA 228 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---------------~~~l~ 228 (293)
.+..-+-.+..+-||.++|+++.|.++++|-..++.+...+.+|+.+|.+++|.|. +++++
T Consensus 233 ----~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 233 ----GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred ----CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence 22234556788899999999999999999999999888889999999999999772 26999
Q ss_pred EecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 229 SASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
++|.|++|++||+.+|.++.++. +.+.|+.++|+|.|+||+++.+|+ ++|||++.|
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk--------tlrvwdl~~ 365 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK--------TLRVWDLKN 365 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC--------cEEEEEecc
Confidence 99999999999999999988764 567899999999999999999886 566666543
No 33
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=211.43 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=182.1
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+++.||.+-+.|+.|-+ +.+|+|||.|.++-+||++.. .....+.+|.+-|.++.+.|.+.+.++||+.|+..
T Consensus 137 v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g----~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG----QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSA 211 (343)
T ss_pred eeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc----eEEEEecCCcccEEEEecCCCCCCeEEecccccce
Confidence 3577999999999999987 557999999999999999853 23446889999999999999778899999999999
Q ss_pred EEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
++||++.+.+.+.++.+ ..+.++.|.|+|.-+++|+.|+++++||+|..+.+...... ...
T Consensus 212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~------------------~~~ 273 (343)
T KOG0286|consen 212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD------------------SII 273 (343)
T ss_pred eeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC------------------ccc
Confidence 99999999999988754 45678999999999999999999999999987655443211 123
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
.++++++|+..|++|.+|..|.++.+||.-+++.+..+.+|++.|.++..+|||..|+|||-|.+++||.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999994
No 34
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.2e-31 Score=208.37 Aligned_cols=264 Identities=20% Similarity=0.350 Sum_probs=201.3
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
..+++||+..|+|+.||.||.+||||+.+|.|+||+..+... ...+-.--+.|.-+.|||. ...|+.|+.||.+-
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~----~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvW 173 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE----QWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVW 173 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce----EEEeecccCceEEEEeccc-ccEEEeecCCCcEE
Confidence 356889999999999999999999999999999999875431 2233334456888999996 56888999999999
Q ss_pred EEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeeeEEecCC--------
Q 022716 93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTG-------- 161 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--~~~~~~v~~~~~~-------- 161 (293)
+|.+.++...+.+..+ .++.+-.|.|+|+.++++..|++|++|++.+..+.+.... +.+...+..+..+
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 9999886444444443 3455668999999999999999999999999988877551 1111111111111
Q ss_pred ------------CEEEEecC---------CC---CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716 162 ------------EMFFLTTG---------NA---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 217 (293)
Q Consensus 162 ------------~~~~~~~~---------~~---~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 217 (293)
..+....+ .. .+-++.++..-.+.|+|+-||+|.|||+.....++.+ .|+.+|..
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~ 332 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTK 332 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEE
Confidence 11111111 01 1223445556678999999999999999887655544 68889999
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
+.|-+ ..+|++++.||.|+.||.++|+++..+. |..+|-+++.+|+.++++++|.| .+.||+.++
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D--------~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDD--------NTALVFEVP 398 (399)
T ss_pred EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCC--------CeEEEEecC
Confidence 99988 8899999999999999999999998875 56689999999999999999987 467777654
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-31 Score=225.76 Aligned_cols=267 Identities=22% Similarity=0.382 Sum_probs=210.2
Q ss_pred ceeecC-ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeCCCe
Q 022716 13 SREYTG-HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKT 90 (293)
Q Consensus 13 ~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~ 90 (293)
++..+. |.+||.-++|+|.|..|++|+.||.+++||+..+ ...-.++||.+.|.++.|+|... .+|++|..|++
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~----~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~ 172 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG----YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGT 172 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC----EEEEEecCCCceEEEEEeCCccchhheeecCCCce
Confidence 445555 9999999999999999999999999999999753 34457899999999999998643 46899999999
Q ss_pred EEEEeCCCCe-eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--------------------
Q 022716 91 VRLWDARSGK-CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-------------------- 148 (293)
Q Consensus 91 i~vwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-------------------- 148 (293)
+++||++... |...+. +.+.++++++.+|+..+++++.|..+.+||+.+.+..+....
T Consensus 173 v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~ 252 (775)
T KOG0319|consen 173 VRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEY 252 (775)
T ss_pred EEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceE
Confidence 9999998554 355444 456788999999999999999999999999854432211100
Q ss_pred ----cceeeeeE-------------------------------------------------------------------E
Q 022716 149 ----GYEVNEIA-------------------------------------------------------------------W 157 (293)
Q Consensus 149 ----~~~~~~v~-------------------------------------------------------------------~ 157 (293)
+..-..-. |
T Consensus 253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l 332 (775)
T KOG0319|consen 253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL 332 (775)
T ss_pred EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence 00000000 1
Q ss_pred ecCCCEEEEecC--------------------------------------------------------------------
Q 022716 158 NMTGEMFFLTTG-------------------------------------------------------------------- 169 (293)
Q Consensus 158 ~~~~~~~~~~~~-------------------------------------------------------------------- 169 (293)
.|....++++.+
T Consensus 333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~ 412 (775)
T KOG0319|consen 333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN 412 (775)
T ss_pred CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence 111000000000
Q ss_pred --------------------------------------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716 170 --------------------------------------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDI 199 (293)
Q Consensus 170 --------------------------------------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~ 199 (293)
+..+.|+++.|++.++||||.|++.+||++
T Consensus 413 svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l 492 (775)
T KOG0319|consen 413 SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL 492 (775)
T ss_pred ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc
Confidence 012557899999999999999999999999
Q ss_pred CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 200 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
++.....++.+|.-.|.++.|+|..+.+||+|.|.+|+||.+.++.+++++. +...|-.++|-.++.+|++++.|+
T Consensus 493 e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG--- 569 (775)
T KOG0319|consen 493 EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG--- 569 (775)
T ss_pred cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC---
Confidence 9999999999999999999999999999999999999999999999999987 677899999999999999999985
Q ss_pred CCCcceEEEEeee
Q 022716 279 QADEGVFRIYGFE 291 (293)
Q Consensus 279 ~~~~~~~~~~~~~ 291 (293)
-+|||++-
T Consensus 570 -----liKlWnik 577 (775)
T KOG0319|consen 570 -----LIKLWNIK 577 (775)
T ss_pred -----cEEEEecc
Confidence 55666653
No 36
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-30 Score=201.36 Aligned_cols=246 Identities=24% Similarity=0.387 Sum_probs=197.5
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCc-------------------------------e------
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-------------------------------V------ 57 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~-------------------------------~------ 57 (293)
.+..-...|.++.|+++|..|++++.|.++++||..+..... +
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 344446799999999999999999999999999986432100 0
Q ss_pred ---eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEE
Q 022716 58 ---KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTI 134 (293)
Q Consensus 58 ---~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l 134 (293)
....+.||...|++++.+|.+ +.++|++.|++|++||++..+|...+...+.+ .++|.|+|-.+|++...+.|++
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-i~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-IAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCc-ceeECCCCcEEEEecCCCeEEE
Confidence 011367999999999999976 78899999999999999988887766655544 5789999999999998889999
Q ss_pred EEccccc--eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC
Q 022716 135 LDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 212 (293)
Q Consensus 135 ~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~ 212 (293)
+|+|... |......+. ........+.|+|+|++++.++..+.+++.|.-.|....++..+.
T Consensus 167 yD~Rs~dkgPF~tf~i~~-----------------~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~ 229 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITD-----------------NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP 229 (311)
T ss_pred EEecccCCCCceeEccCC-----------------CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc
Confidence 9999753 222211110 123345689999999999999999999999999999888888776
Q ss_pred CCe---eEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 213 WPV---RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 213 ~~v---~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
..- ...+|+||++++++|+.||.|.+|++++|.++..+.. ..++.++.|+|...++|+++..-..|.
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~ 301 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWL 301 (311)
T ss_pred CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEe
Confidence 432 5677999999999999999999999999999887653 567899999999999999986544443
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-31 Score=231.64 Aligned_cols=260 Identities=21% Similarity=0.284 Sum_probs=209.2
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
..+..|..|.++|..+.|+|++..++|||.|-+|++|+.... .....+.||.+.|..+.|+++- -.++|+|.|.+
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r----rclftL~GHlDYVRt~~FHhey-PWIlSASDDQT 116 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR----RCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQT 116 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc----eehhhhccccceeEEeeccCCC-ceEEEccCCCe
Confidence 345668899999999999999999999999999999998743 3345688999999999999875 48999999999
Q ss_pred EEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeeeE-----Eec-C-
Q 022716 91 VRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIA-----WNM-T- 160 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--~~~~~~v~-----~~~-~- 160 (293)
|+||+.++++|+.....+.+ ++|.+|+|....+++++-|.+|++||+...+..+...- .......+ +.. +
T Consensus 117 IrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~Da 196 (1202)
T KOG0292|consen 117 IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDA 196 (1202)
T ss_pred EEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCe
Confidence 99999999999998876654 67888999999999999999999999865332211110 00000000 000 0
Q ss_pred CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEE
Q 022716 161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 238 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~i 238 (293)
--...+..|+-++.-++|+|.-..+++|++|..|++|.+... -.+.+..+|.+.|.++-|+|...++++.|+|+.|++
T Consensus 197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRV 276 (1202)
T ss_pred eeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEE
Confidence 012335566777889999999999999999999999987532 235677899999999999999999999999999999
Q ss_pred EEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCC
Q 022716 239 SNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 239 w~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
||....+.++++. ...+-..++-||..|++|.|-+.+
T Consensus 277 wDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 277 WDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred EecccccceeeeeccCCeEEEEEecCCcceeeeecCCc
Confidence 9999988888774 355788999999999999998765
No 38
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-31 Score=232.03 Aligned_cols=245 Identities=20% Similarity=0.320 Sum_probs=199.3
Q ss_pred eeec-CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCC--------------------------------CC------
Q 022716 14 REYT-GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH--------------------------------GH------ 54 (293)
Q Consensus 14 ~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~--------------------------------~~------ 54 (293)
+++. +|++.|.++.||+||++||+||.|+.||||.+... ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 5566 89999999999999999999999999999987540 00
Q ss_pred ------Cc------------eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEE
Q 022716 55 ------GK------------VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116 (293)
Q Consensus 55 ------~~------------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 116 (293)
+. .....+.||.+.|.++.|+. .++|+|++-|.+||+|.+....|+..+.+..-++|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 00 00123678999999999985 36899999999999999999999999999999999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEE
Q 022716 117 KP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVS 195 (293)
Q Consensus 117 ~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~ 195 (293)
.| |++++++|+-|+.++||++...+.. .|+. -...|+++++.|+|+..++|+-+|.++
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv------------~W~D---------l~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVV------------DWND---------LRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeE------------eehh---------hhhhheeEEeccCCceEEEEEeccEEE
Confidence 99 7889999999999999998764422 2321 124578999999999999999999999
Q ss_pred EEeCCCCEEEEEee---------ccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEEEec---CCCcceeEEC
Q 022716 196 LWDISEMLCVRTFT---------KLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQIPC---RAAMNSVEWN 262 (293)
Q Consensus 196 iwd~~~~~~~~~~~---------~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~---~~~i~~~~~s 262 (293)
+|++........+. .+. .|+.+.|.|... .|+..+.|..|+|+|..+..+++++.. ...-....|+
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs 555 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFS 555 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEc
Confidence 99998765544332 133 799999998654 466668999999999988777766642 2345678999
Q ss_pred CCCCeEEEEEcCCCCCCCCc
Q 022716 263 PKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 263 p~~~~la~~~~d~~~~~~~~ 282 (293)
.||++|++|++|..+|+|..
T Consensus 556 ~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 556 SDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cCCCEEEEeecCceEEEEeC
Confidence 99999999999999998875
No 39
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-32 Score=203.52 Aligned_cols=259 Identities=22% Similarity=0.333 Sum_probs=197.4
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE-cCCCCCEEEEEeCCCeEEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~~l~s~~~d~~i~vw 94 (293)
-++|...|+.+..+..|++|||+++|++|||+.+.++.. ......|.||+++|..++| +|..+.+|+|++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 468999999999999999999999999999999987543 2344578999999999999 78878999999999999999
Q ss_pred eCCCCeeeeeee---ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEcccc-ceeee---ecccceeeeeEEecCCCEEE
Q 022716 95 DARSGKCSQQAE---LSGENINITYKPD--GTHIAVGNRDDELTILDVRKF-KPIHR---RKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 95 d~~~~~~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~-~~~~~---~~~~~~~~~v~~~~~~~~~~ 165 (293)
.-.+++..+..+ +...+.+++|.|. |-.|+++++||.|.+++.+.. ..... ..+...++.+.|.|....-.
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 998886544333 4566778888874 568999999999999998765 11111 12456678888887622100
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeeccCCCeeEEEEccCC----CEEEEecCCCcEEEE
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLEWPVRTISFSHTG----DYIASASEDLFIDIS 239 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~----~~l~s~s~d~~i~iw 239 (293)
+..+. ....-+.|++|+.|+.|+||+..+. ..-.++.+|...|+.++|+|.- .++|++|+||.+.||
T Consensus 166 ~~~~~-------~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 166 LVDQG-------PAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccC-------cccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 00000 0011356999999999999998764 3344588999999999999974 589999999999999
Q ss_pred EcCCC-CE-EEEE--ecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 240 NVHTG-RT-VHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 240 ~~~~~-~~-~~~~--~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
..... .. ..++ +....+-.++||+.|+.||.++.|.+++.|.+
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 87632 11 1111 12346889999999999999999988887766
No 40
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.1e-31 Score=218.96 Aligned_cols=251 Identities=22% Similarity=0.311 Sum_probs=195.5
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC-------------------------Ccee-------
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-------------------------GKVK------- 58 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~-------------------------~~~~------- 58 (293)
.+.-.+.+|...|.++++.|.|-+|+|||.|.+|++||+..... ..+.
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 45566889999999999999999999999999999999853210 0000
Q ss_pred --E---------------------EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-eeeeee------c
Q 022716 59 --D---------------------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQQAEL------S 108 (293)
Q Consensus 59 --~---------------------~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~~~~~------~ 108 (293)
. ...+||...+++.+|+|.....++|++.||++|+||+.+.+. ...+.. .
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 0 023579999999999999888899999999999999976542 222222 2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC--CEEEEEECCCCCEEE
Q 022716 109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA--GCYCIAIDPMGRYFA 186 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ 186 (293)
-.+.+|+|+|||+.+++|..||.|.+||.++.... ..+.+-..|.. .++||+|+++|++|+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-----------------p~~~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-----------------PVMKVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccc-----------------cceEeeeccCCCCceeEEEeccccchhh
Confidence 24678999999999999999999999997543211 11122233443 789999999999999
Q ss_pred EecCCCcEEEEeCCCCE-EEEEeecc--CCCeeEEEEccCCCEEEEecC------CCcEEEEEcCCCCEEEEEec-CCCc
Q 022716 187 VGSADSLVSLWDISEML-CVRTFTKL--EWPVRTISFSHTGDYIASASE------DLFIDISNVHTGRTVHQIPC-RAAM 256 (293)
Q Consensus 187 ~gs~d~~i~iwd~~~~~-~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~------d~~i~iw~~~~~~~~~~~~~-~~~i 256 (293)
+-+.|+++++||+++.. ++....+. ..+-+.++|||+.+++++|.. -+.+.++|..+...+..+.. ..+|
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASV 460 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceE
Confidence 99999999999998764 45555554 357788999999999999854 46799999999888877654 4578
Q ss_pred ceeEECCCCCeEEEEEcCCCCC
Q 022716 257 NSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 257 ~~~~~sp~~~~la~~~~d~~~~ 278 (293)
..+.|||..|+|..|+.|++++
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~ 482 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAH 482 (641)
T ss_pred EEEeecchhhheeeecCCCceE
Confidence 8999999999999999886444
No 41
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.4e-29 Score=219.55 Aligned_cols=231 Identities=19% Similarity=0.256 Sum_probs=176.2
Q ss_pred eecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCC---ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 15 EYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
.+.||.+.|.+++|+| ++++|++|+.|++|++||+...... ......+.+|...|.+++|+|....+|+|++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4779999999999999 8899999999999999999753211 01234578999999999999986679999999999
Q ss_pred EEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 91 VRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
|++||+.+++....+. +...+.+++|+|+|..|++++.|++|++||+++.+.+.... .+
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~--------------------~H 209 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE--------------------AH 209 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe--------------------cC
Confidence 9999999988776665 34567889999999999999999999999999866544321 11
Q ss_pred CC-CEEEEEECCCCCEEEEe----cCCCcEEEEeCCCCEE-EEEeeccC-CCeeEEEEccCCCEEEEec-CCCcEEEEEc
Q 022716 170 NA-GCYCIAIDPMGRYFAVG----SADSLVSLWDISEMLC-VRTFTKLE-WPVRTISFSHTGDYIASAS-EDLFIDISNV 241 (293)
Q Consensus 170 ~~-~~~~~~~~~~~~~l~~g----s~d~~i~iwd~~~~~~-~~~~~~~~-~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~ 241 (293)
.. ....+.+.+++..++++ +.|+.|++||+++... +.....+. ..+....|+|++++|++|+ .|+.|++|++
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 11 12234566666666554 3589999999987543 32222222 3456677999999998887 5999999999
Q ss_pred CCCCEEEEEe--cCCCcceeEECCCC
Q 022716 242 HTGRTVHQIP--CRAAMNSVEWNPKY 265 (293)
Q Consensus 242 ~~~~~~~~~~--~~~~i~~~~~sp~~ 265 (293)
.+++.+.... ...+++.++|.|+-
T Consensus 290 ~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 290 MNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eCCceEEEeeccCCCCCcceEecccc
Confidence 9988765543 34568889998854
No 42
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=4e-30 Score=199.61 Aligned_cols=252 Identities=20% Similarity=0.293 Sum_probs=192.0
Q ss_pred ccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 19 h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
-.+.|.+|+|||. ...++.||+||+||+|++...+ .........|.++|.+++|+.++ ..+++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g--~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG--QLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC--cccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEcc
Confidence 3578999999994 4566699999999999997532 22223355789999999999765 688899999999999999
Q ss_pred CCeeeeeeeecCceEEEEEcCCCC--EEEEEeCCCeEEEEEccccceeeeecccceeeeeEE-------ecCCCEEEEec
Q 022716 98 SGKCSQQAELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW-------NMTGEMFFLTT 168 (293)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~~ 168 (293)
+++......+.+++.++.|-+... -|++|+.|.+++.||+|...++....++..+..... ...++.+.+..
T Consensus 103 S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 103 SGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred CCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 997777667778888899876544 789999999999999999998888776655433211 11111111111
Q ss_pred C--------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEeecc---------CCCeeEEEEccC
Q 022716 169 G--------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTKL---------EWPVRTISFSHT 223 (293)
Q Consensus 169 ~--------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~~---------~~~v~~l~~sp~ 223 (293)
- .-.+-|+++.++....|.|+-+|.+-+..+..... -.+|+=| -.+|++|+|+|.
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~ 262 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV 262 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc
Confidence 1 11245888888888889999999999988765411 1122222 246899999999
Q ss_pred CCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEc
Q 022716 224 GDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~ 273 (293)
-..|+|++.||...+||-....+++.. .+..+|++.+|+.+|+++|++-.
T Consensus 263 hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 263 HGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 999999999999999998887777765 45679999999999999999874
No 43
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=9.5e-29 Score=217.06 Aligned_cols=239 Identities=19% Similarity=0.242 Sum_probs=176.7
Q ss_pred cceeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCc----eeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 12 HSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK----VKDIELRGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~----~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
....+.+|.+.|.+++|+|+ +++|+||+.||+|++||+....... .....+.+|...|.+++|+|.+..+|+|++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 34568899999999999997 7899999999999999996432100 112346789999999999998766778999
Q ss_pred CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc-ceeeeeEEecCCCEEE
Q 022716 87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFF 165 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 165 (293)
.|+.|++||+++++....+.....+.+++|+|+|..|++++.|+.+++||+++...+...... ..+...
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~---------- 215 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK---------- 215 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE----------
Confidence 999999999999887666666677889999999999999999999999999987655432211 000000
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCC----cEEEEeCCC-CEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEE
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADS----LVSLWDISE-MLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDI 238 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~----~i~iwd~~~-~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~i 238 (293)
.+....+++++.++++++.|+ +|+|||+++ ...+..+..+ ...+...-..++|.++++|+.|+.|++
T Consensus 216 ------~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 216 ------NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred ------EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 012334678888888877664 799999985 4444443222 223333334566899999999999999
Q ss_pred EEcCCCCE--EEEEecCCCcceeEECCCCC
Q 022716 239 SNVHTGRT--VHQIPCRAAMNSVEWNPKYN 266 (293)
Q Consensus 239 w~~~~~~~--~~~~~~~~~i~~~~~sp~~~ 266 (293)
|++..+.. +..+....+++.++|.|+..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEccccc
Confidence 99987643 22334556788999999653
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-30 Score=194.86 Aligned_cols=240 Identities=20% Similarity=0.280 Sum_probs=195.8
Q ss_pred ccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 7 PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 7 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
|.....+++|.||...|..++.+.|...|++|+.|..|.+||+.+.. ....+.+|.+.|+.+.|+.+ ...++||+
T Consensus 46 p~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----v~Rr~rgH~aqVNtV~fNee-sSVv~Sgs 120 (307)
T KOG0316|consen 46 PLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK----VDRRFRGHLAQVNTVRFNEE-SSVVASGS 120 (307)
T ss_pred ccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe----eeeecccccceeeEEEecCc-ceEEEecc
Confidence 34445689999999999999999999999999999999999998642 33468999999999999865 67999999
Q ss_pred CCCeEEEEeCCCCeee--eeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716 87 GDKTVRLWDARSGKCS--QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
.|..+++||.++.... +.+. ....+.++... +..+++|+-||+++.||+|..+....
T Consensus 121 fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sD------------------ 180 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSD------------------ 180 (307)
T ss_pred ccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehh------------------
Confidence 9999999999876433 3221 33445555544 56899999999999999998654321
Q ss_pred EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC--eeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 164 FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP--VRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~--v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
--..+++|+.|+++++..+.++.|+++++.|-.+++.++.+++|.+. =..++++.....+++||+||.+++||+
T Consensus 181 ----y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 181 ----YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ----hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 12356789999999999999999999999999999999999998753 234567778889999999999999999
Q ss_pred CCCCEEEEEecCCC--cceeEECCCCCeEEEEEcCC
Q 022716 242 HTGRTVHQIPCRAA--MNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 242 ~~~~~~~~~~~~~~--i~~~~~sp~~~~la~~~~d~ 275 (293)
.....+..+...+. +.+++++|...-|.++..-+
T Consensus 257 vd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 257 VDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred ccceeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 99998888876554 57899999987777666544
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7e-31 Score=199.05 Aligned_cols=203 Identities=26% Similarity=0.420 Sum_probs=179.1
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
.|+..|.+++|+.|.++|+||+.++.+||||+... .....++.+|.+.|..+.|...+ +.++|++.|++||+||.+
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p---~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP---KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHR 173 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCC---CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEec
Confidence 78999999999999999999999999999999753 23344678999999999998764 577888999999999999
Q ss_pred CCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177 (293)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
++..++.+++..++.++.++++|+++.+. ..+.|..||..++.+++..+.+..| .+..
T Consensus 174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV---------------------~SAS 231 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNV---------------------ESAS 231 (334)
T ss_pred cCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCcccc---------------------cccc
Confidence 99999999999999999999999877665 4678999999999988877665544 3566
Q ss_pred ECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
++|+...+++|+.|..++-||+.+++.+..+ ++|..||.++.|+|+|..-|+||+||+|+||....++.
T Consensus 232 L~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 7899999999999999999999999998886 89999999999999999999999999999999876653
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1e-31 Score=212.31 Aligned_cols=231 Identities=19% Similarity=0.350 Sum_probs=186.1
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
.+.|.|+++ |+..+++|..|++|+|||..+. .....+.||++.|.++.|. ..+++||+.|.+|++||.+++
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~----~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSL----ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccH----HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCC
Confidence 368999997 4557999999999999998643 2233578999999999984 358999999999999999999
Q ss_pred eeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 100 KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
+++..+.+ ...+..+.|+. .++++++.|.++.+||+.......... .+..+.+.+..+.|
T Consensus 268 e~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rr-----------------VLvGHrAaVNvVdf 328 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRR-----------------VLVGHRAAVNVVDF 328 (499)
T ss_pred chhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHH-----------------HHhhhhhheeeecc
Confidence 98877654 45566788864 589999999999999997644211100 01223344455555
Q ss_pred CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC-CCcc
Q 022716 179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMN 257 (293)
Q Consensus 179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-~~i~ 257 (293)
+.+++++++.|.+|++|++.+++.++++.+|.-.|-++.+ .++++++||.|.+|++||.+.|..++.+..+ .-|+
T Consensus 329 --d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR 404 (499)
T KOG0281|consen 329 --DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 404 (499)
T ss_pred --ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh
Confidence 4669999999999999999999999999999999998876 7899999999999999999999988877644 4589
Q ss_pred eeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 258 SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 258 ~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
++.| +.+.|++|+-| |++|||++..
T Consensus 405 ciRF--d~krIVSGaYD--------GkikvWdl~a 429 (499)
T KOG0281|consen 405 CIRF--DNKRIVSGAYD--------GKIKVWDLQA 429 (499)
T ss_pred heee--cCceeeecccc--------ceEEEEeccc
Confidence 9999 56789999988 6788888754
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=2.2e-28 Score=202.60 Aligned_cols=260 Identities=21% Similarity=0.379 Sum_probs=203.0
Q ss_pred cceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
..-+++||...|.++.|-|.-. +++|||.|++|-+|+=.+. .-...+..|...|+++.|+|+ +.+++|++.||+
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF----KFk~s~r~HskFV~~VRysPD-G~~Fat~gsDgk 213 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF----KFKSSFREHSKFVNCVRYSPD-GSRFATAGSDGK 213 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe----eeeecccccccceeeEEECCC-CCeEEEecCCcc
Confidence 4567899999999999998876 4899999999999963221 112245679999999999998 568999999999
Q ss_pred EEEEeCCCCeeeeeee----ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee----eeEEec---
Q 022716 91 VRLWDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN----EIAWNM--- 159 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~----~v~~~~--- 159 (293)
+.+||=++++.+..++ +.+.+..++|+||++++++++.|.++++||+.+.+..++..++..+. .+.|..
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 9999999998877665 45778899999999999999999999999999888877776654421 234531
Q ss_pred -----CCCE-----------EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE-----------EEEeec--
Q 022716 160 -----TGEM-----------FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-----------VRTFTK-- 210 (293)
Q Consensus 160 -----~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~-----------~~~~~~-- 210 (293)
.|.+ ..+..|+..+++++++|+++++.+|+.||.|.-|+...+.. +..+..
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 1211 22344567799999999999999999999999999764321 100000
Q ss_pred --------------------------------------------------------------------cCCCeeEEEEcc
Q 022716 211 --------------------------------------------------------------------LEWPVRTISFSH 222 (293)
Q Consensus 211 --------------------------------------------------------------------~~~~v~~l~~sp 222 (293)
......+++++|
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence 011134568899
Q ss_pred CCCEEEEecCCCcEEEEEcCCCCE---EEEEecCCCcceeEECCCCCeEEEEEcCCC
Q 022716 223 TGDYIASASEDLFIDISNVHTGRT---VHQIPCRAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 223 ~~~~l~s~s~d~~i~iw~~~~~~~---~~~~~~~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
++..+|.|+.|+.+.||.+..... .....++.+|++|++||++.+||++...+.
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence 999999999999999999987542 345678899999999999999999987753
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.7e-30 Score=197.23 Aligned_cols=239 Identities=21% Similarity=0.329 Sum_probs=189.7
Q ss_pred cccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 20 KKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 20 ~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
.+.+-.++|++. .+++++++.||++|+||+.... .....++.|...|.++.|++.....++++++|++|++|+...
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s---~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS---KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC---cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 467888999975 4688999999999999976432 223457889999999999998888888999999999999887
Q ss_pred CeeeeeeeecC-ceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 99 GKCSQQAELSG-ENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 99 ~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
+..+.++..+. -+...+|+| ....+++++.|+++++||++.. |..+.+..++..+.|.
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~--------------------gk~~~i~ah~~Eil~c 196 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP--------------------GKFMSIEAHNSEILCC 196 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC--------------------CceeEEEeccceeEee
Confidence 77776665443 355788988 4678899999999999998753 2222344556667777
Q ss_pred EECCC-CCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCC-EEEEEec
Q 022716 177 AIDPM-GRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGR-TVHQIPC 252 (293)
Q Consensus 177 ~~~~~-~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~-~~~~~~~ 252 (293)
.|+.- .+.|++|+.|+.|+.||+++. .++.++.+|...|+.+.|||-. ..||++|.|-+++|||...+. .+.++.+
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~ 276 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH 276 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc
Confidence 77754 577899999999999999875 3566788999999999999975 578999999999999998654 3445555
Q ss_pred CCC-cceeEECC-CCCeEEEEEcCCCCCCCC
Q 022716 253 RAA-MNSVEWNP-KYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 253 ~~~-i~~~~~sp-~~~~la~~~~d~~~~~~~ 281 (293)
+.. +..+.||+ +..++|++|.|..+++|+
T Consensus 277 HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 277 HTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cceEEeccccccccCceeeecccccceeeec
Confidence 544 67799998 568999999998777665
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.2e-30 Score=216.10 Aligned_cols=249 Identities=16% Similarity=0.242 Sum_probs=208.6
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
+.+..|...|.++.|+|...+++++-..|.|.||+.+.+. ....+.-..-+|.+..|-+. .+.+++|+.|..|+|
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt----mVksfeV~~~PvRa~kfiaR-knWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT----MVKSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIRV 81 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce----eeeeeeecccchhhheeeec-cceEEEecCCceEEE
Confidence 4556688999999999999999999999999999987532 22234444667888888765 468999999999999
Q ss_pred EeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716 94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
|+..+++.+..++.+ ..+.+++.+|...++++++.|-+|++||-++.-...+ .+..|..-
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q-------------------tfeGH~Hy 142 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ-------------------TFEGHEHY 142 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee-------------------EEcCcceE
Confidence 999999988888754 4567899999999999999999999999776432221 23345556
Q ss_pred EEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC--CEEEEecCCCcEEEEEcCCCCEEEE
Q 022716 173 CYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG--DYIASASEDLFIDISNVHTGRTVHQ 249 (293)
Q Consensus 173 ~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~--~~l~s~s~d~~i~iw~~~~~~~~~~ 249 (293)
+.+++|.|.+ +.+|+++-|++|++|.+.+..+..++.+|+..|++++|-|-| .+|+||++|.+++|||.++..++.+
T Consensus 143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T 222 (794)
T KOG0276|consen 143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT 222 (794)
T ss_pred EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHH
Confidence 7789999864 789999999999999999988889999999999999998755 6999999999999999999888888
Q ss_pred Ee-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEE
Q 022716 250 IP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFR 286 (293)
Q Consensus 250 ~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~ 286 (293)
+. |...|+.+.|+|.-.+|++||.|+.++||...+.|
T Consensus 223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred hhcccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 75 56679999999999999999999877777666554
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-29 Score=201.37 Aligned_cols=250 Identities=22% Similarity=0.322 Sum_probs=192.6
Q ss_pred ccccceeecCccccEEEEEECC---CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716 9 KNLHSREYTGHKKKVHSVAWNC---TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85 (293)
Q Consensus 9 ~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~ 85 (293)
++.+...+.||.++|.+++|-- ....|++||.|.++++|..+.............||...|.+++..+++ ..++||
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~Sg 211 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSG 211 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEee
Confidence 3456678899999999888853 234699999999999998875433222222345999999999988764 678899
Q ss_pred eCCCeEEEEeCCCCe-------------------------eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc
Q 022716 86 SGDKTVRLWDARSGK-------------------------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRK 139 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~ 139 (293)
+.|.++++|+..+.. ++..++ +...+.++.|.+ ...+.+++.|.+|+.||+.+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 999999999932110 011112 223455677876 67899999999999999987
Q ss_pred cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC---EEEEEeeccCCCee
Q 022716 140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLEWPVR 216 (293)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~---~~~~~~~~~~~~v~ 216 (293)
......+. ......|++.+|..++|++|+.|..|++||.+++ ...+++.+|.+.|.
T Consensus 291 g~~~~~~~---------------------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs 349 (423)
T KOG0313|consen 291 GGLKSTLT---------------------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS 349 (423)
T ss_pred ccceeeee---------------------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh
Confidence 66443322 2345678999999999999999999999999764 34568899999999
Q ss_pred EEEEccCCC-EEEEecCCCcEEEEEcCCCC-EEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 217 TISFSHTGD-YIASASEDLFIDISNVHTGR-TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 217 ~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~-~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
++.|+|... +|++||.|+++++||+++.+ .+..+. +...|-++.|+. +.+|++||.|++++|...
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence 999999876 47999999999999999877 566654 456799999976 679999999987766544
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.6e-31 Score=206.62 Aligned_cols=242 Identities=20% Similarity=0.309 Sum_probs=195.0
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCce----eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV----KDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~----~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..|.++.+.|..|||||++|++||.||.|.+|+........- ..-.+..|.++|.++.|+.+ +..++||+.||.|
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlAsGsqDGkI 287 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLASGSQDGKI 287 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhhccCcCCcE
Confidence 347788999999999999999999999999999865321110 01135668899999999875 6789999999999
Q ss_pred EEEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 92 RLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
++|.+.+|.|++.+. +...+.++.|+.|+..+++++.|.++++--+++++.+++.. .+
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr--------------------GH 347 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR--------------------GH 347 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc--------------------Cc
Confidence 999999999988775 44567899999999999999999999999998887765532 23
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--C-----------------------------------
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--E----------------------------------- 212 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--~----------------------------------- 212 (293)
.+-+....|.++|.++++++.||+|++|+.++.+|+.+++.. +
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 344556778899999999999999999999887766554321 1
Q ss_pred ----------CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 213 ----------WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 213 ----------~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
+..-+.+.||.|.++.+.++|+.++.+.+.+|+.-+.++- ...+..++.||..|.||+-+.|+-+.
T Consensus 428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllK 504 (508)
T KOG0275|consen 428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLK 504 (508)
T ss_pred eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhh
Confidence 1122346789999999999999999999999998888764 44578899999999999999885433
No 52
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.6e-29 Score=200.54 Aligned_cols=244 Identities=20% Similarity=0.308 Sum_probs=205.5
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..-.++||...|..+++|+--.+|++++.|+.|+.||++.+.. + ..+.||-..|.+++.+|.. +.|+||+.|.++
T Consensus 185 LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv--I--R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~ 259 (460)
T KOG0285|consen 185 LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV--I--RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTI 259 (460)
T ss_pred EEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh--H--HHhccccceeEEEeccccc-eeEEecCCcceE
Confidence 3456789999999999999999999999999999999986432 1 2467999999999999975 689999999999
Q ss_pred EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
|+||+++...+..+. +...+.++.+.|-+.++++|+.|++|++||++.++.+. .+..+.
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~--------------------tlt~hk 319 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI--------------------TLTHHK 319 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE--------------------eeeccc
Confidence 999999988777776 45567788888888899999999999999998766433 234455
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~ 250 (293)
..+-+++.+|....+|+++.|+ |+-|++..+..+..+.+|..-|++++.+.|+ ++++|++.|.+.+||.++|......
T Consensus 320 ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 320 KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence 6677899999999999999885 9999999998888899999999999998776 7889999999999999998654332
Q ss_pred ---------ecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 251 ---------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 251 ---------~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
.....|.+.+|...+..|++|..|++|.++.+
T Consensus 398 ~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 398 QTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred cccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 22346788999999999999999998877544
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.4e-29 Score=187.25 Aligned_cols=243 Identities=20% Similarity=0.301 Sum_probs=193.3
Q ss_pred cccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 10 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
....+.+..|+++|..+.|+-||++.+|++.|.+||+|+.... .......+|-..|..++.+.+ ...|++|+.|.
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~D-nskf~s~GgDk 81 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSD-NSKFASCGGDK 81 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----ceeeeecCCCceeeecccccc-ccccccCCCCc
Confidence 3455667899999999999999999999999999999987532 223356788888999887765 45789999999
Q ss_pred eEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccc--eeeeecccceeeeeEEecCCCEEEE
Q 022716 90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
.+.+||+.+|+..+.+..+ +++..++|..+...+++|+-|..+++||-|+.. |++..
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil-------------------- 141 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL-------------------- 141 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh--------------------
Confidence 9999999999988887654 567789999999999999999999999987643 33221
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
....+.+.++.+ .+..+++|+.||+++.||++.+....-. ...||++++|+++++.+..++.|+++++-|-.+|+.
T Consensus 142 dea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 142 DEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred hhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 112234445554 4678999999999999999999755433 345899999999999999999999999999999998
Q ss_pred EEEEecCCC---cceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 247 VHQIPCRAA---MNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 247 ~~~~~~~~~---i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
+..+..+.. -..+.++....++++|+.|+..|.|+
T Consensus 218 L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred HHHhcccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence 766543321 23567888889999999986555443
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=206.90 Aligned_cols=262 Identities=20% Similarity=0.283 Sum_probs=206.9
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
..+..|.+.++.+.|-++...|+||+.|..|++|++....... ...+.|..++|+++.|.+++ ..+++++.|+.+++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~--~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL--ISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRL 245 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh--hhhhhccCCCcceeeecCCC-ceEEeecCCCceee
Confidence 3456789999999999998999999999999999987543222 12466778889999998875 56778999999999
Q ss_pred EeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE---------------
Q 022716 94 WDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW--------------- 157 (293)
Q Consensus 94 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~--------------- 157 (293)
|++...+...++.. ...+.++.|......+++|+.|.++++||+.+..+.+...+...+++|+-
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVR 325 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceE
Confidence 99999887776654 45667777777666699999999999999998777766655555555543
Q ss_pred --ecC-CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc----CCCeeEEEEccCCCEEEEe
Q 022716 158 --NMT-GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL----EWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 158 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~s~ 230 (293)
+.. ..........+.++++..++++..|++.+.|.++.++|+++.+....+... ...++.+.|||++.|+|+|
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec
Confidence 211 111112223357899999999999999999999999999998877776543 2358889999999999999
Q ss_pred cCCCcEEEEEcCCCCEEEEEec-CC--CcceeEECCCCCeEEEEEcCCCCC
Q 022716 231 SEDLFIDISNVHTGRTVHQIPC-RA--AMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 231 s~d~~i~iw~~~~~~~~~~~~~-~~--~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
|.||.|+||++.+++....+.. .. .|++++|+|.|.+|++++.++...
T Consensus 406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~ 456 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVT 456 (459)
T ss_pred cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceE
Confidence 9999999999999998776643 22 599999999999999999875433
No 55
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=4.7e-29 Score=194.59 Aligned_cols=219 Identities=23% Similarity=0.395 Sum_probs=176.9
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCC------------CC--CceeEEEeeCCcCCeeEEEEcCCCC
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH------------GH--GKVKDIELRGHADSVDQLCWDPKHA 79 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~------------~~--~~~~~~~~~~h~~~i~~~~~~~~~~ 79 (293)
..++.|++++.+.+|||||.++||||.|-.|||.|++.. +. .......+-.|.+.|+.+.|+|. .
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-E 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-h
Confidence 446799999999999999999999999999999998611 00 00122346679999999999997 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeee---eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716 80 DLIATASGDKTVRLWDARSGKCSQQ---AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA 156 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~ 156 (293)
..|+||+.|++|+++|......... ++-..++.++.|+|.|.+|++|+.-.++++||+++.++.-...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan--------- 255 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--------- 255 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC---------
Confidence 6899999999999999865433222 2334567789999999999999999999999999876533211
Q ss_pred EecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-cC-CCeeEEEEccCCCEEEEecCCC
Q 022716 157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LE-WPVRTISFSHTGDYIASASEDL 234 (293)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~~-~~v~~l~~sp~~~~l~s~s~d~ 234 (293)
|+ ..+.+.+.++.+++.++..++|+.||.|+|||=-..+|++++.. |. ..|.+..|..+|+|+.+.+.|.
T Consensus 256 --Pd------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 256 --PD------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred --cc------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 11 12456788999999999999999999999999888888887754 54 4699999999999999999999
Q ss_pred cEEEEEcCCCCEEEEE
Q 022716 235 FIDISNVHTGRTVHQI 250 (293)
Q Consensus 235 ~i~iw~~~~~~~~~~~ 250 (293)
.+++|.+.+++.+..+
T Consensus 328 ~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEY 343 (430)
T ss_pred eeeeeeecCCceEEEE
Confidence 9999999888876544
No 56
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.1e-28 Score=180.52 Aligned_cols=252 Identities=21% Similarity=0.345 Sum_probs=192.8
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC-CceeEEEeeCCcCCeeEEEEcCC---CCCEEEEEeC-C
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-GKVKDIELRGHADSVDQLCWDPK---HADLIATASG-D 88 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~-~~~~~~~~~~h~~~i~~~~~~~~---~~~~l~s~~~-d 88 (293)
+.-+.|++.|.|.+|||+|..|+||+.|++|++.-+..... ..-...++..|.+.|..++|..+ ++.+|++++. |
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 44467899999999999999999999999999976543221 12234567789999999999542 3456777654 7
Q ss_pred CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
..|.+=|...++..+.+..+...+-.-++.++..+++|+.|.+|+.||+|-...++....... .+ .-
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~--------~~-----gl 229 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH--------DG-----GL 229 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCccc--------CC-----Cc
Confidence 778888888887776665544444344667788999999999999999987665544321100 00 01
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC--CE
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG--RT 246 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~--~~ 246 (293)
..+.+.+++++|.|++|++|-.|...-+||++.+++++.+..|...|+++.|+|...|+.+||.|..|++-|++.- +.
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence 1245678999999999999999999999999999999999999999999999999999999999999999998642 11
Q ss_pred EE---EEecCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 247 VH---QIPCRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 247 ~~---~~~~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
+. .-.++.....+.|+|..--|.+.+.|+...
T Consensus 310 l~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 310 LPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred CceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 11 124566788899999887788888887443
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=198.41 Aligned_cols=247 Identities=23% Similarity=0.369 Sum_probs=203.5
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
....|.||...|+.+.|+|+...+++++.|..|++|.+.... .......|..+|+.+..+|. +++|++++.|+..
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----~~~~~~~h~~~V~~ls~h~t-geYllsAs~d~~w 327 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----EPTSSRPHEEPVTGLSLHPT-GEYLLSASNDGTW 327 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc----CccccccccccceeeeeccC-CcEEEEecCCceE
Confidence 346689999999999999999999999999999999986432 22345689999999999997 4799999999999
Q ss_pred EEEeCCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 92 RLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
.+.|++++.+........ ...+.+|+|||..+.+|..|+.+++||+.+...... +..
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~--------------------Fpg 387 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAK--------------------FPG 387 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccccc--------------------CCC
Confidence 999999998766544432 356789999999999999999999999987553322 224
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEecCCCcEEEEEcCC--CC
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDLFIDISNVHT--GR 245 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~--~~ 245 (293)
+.+++..++|+.+|.+||++.+|+.|++||+++.+..+++.-.+ .++.+++|.+.|++|+.++.|-.|++++-.+ ..
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 67788999999999999999999999999999887777765443 4799999999999999999998888887544 34
Q ss_pred EEEEEecCC-CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 246 TVHQIPCRA-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 246 ~~~~~~~~~-~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
++..+..+. ..+.+.|..+-++++++|+|+. +|||.++
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~--------l~~~a~~ 506 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQYLASTSMDAI--------LRLYALT 506 (506)
T ss_pred eeehhhhcccccceeeecccceEEeeccchhh--------eEEeecC
Confidence 555555444 6788999999999999999964 7888764
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=8.6e-30 Score=208.85 Aligned_cols=224 Identities=23% Similarity=0.379 Sum_probs=181.8
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCC
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
.+.++|.||..+|.+++|+.+|..++|+|.|+.+++||++.. ... ...|. ..++++.|+|++.+.+++|+.|+
T Consensus 249 ~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---~~~---~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ 322 (503)
T KOG0282|consen 249 RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---QVL---SRFHLDKVPTCVKFHPDNQNIFLVGGSDK 322 (503)
T ss_pred ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc---eEE---EEEecCCCceeeecCCCCCcEEEEecCCC
Confidence 356889999999999999999999999999999999999853 211 12233 45789999999888999999999
Q ss_pred eEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeeeEEecCCCEEEE
Q 022716 90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 166 (293)
.|+.||+++++.++.+..+ +.+..+.|-++|+++++.+.|+.+++|+.+...++..... .+...++...|.+..+..
T Consensus 323 ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a 402 (503)
T KOG0282|consen 323 KIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA 402 (503)
T ss_pred cEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh
Confidence 9999999999977766543 4566899999999999999999999999887766554332 123344555555544433
Q ss_pred ecCC--------------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716 167 TTGN--------------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF 220 (293)
Q Consensus 167 ~~~~--------------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 220 (293)
.+.. +-...+.|+|||++|++|+.||.+.+||.++...+..++.|..++..+.|
T Consensus 403 Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~w 482 (503)
T KOG0282|consen 403 QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDW 482 (503)
T ss_pred hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEe
Confidence 3222 12345899999999999999999999999999889999999999999999
Q ss_pred ccCC-CEEEEecCCCcEEEEE
Q 022716 221 SHTG-DYIASASEDLFIDISN 240 (293)
Q Consensus 221 sp~~-~~l~s~s~d~~i~iw~ 240 (293)
+|.. ..+|||+-||.|++|+
T Consensus 483 HP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 483 HPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCcceeEecccCceeEecC
Confidence 9974 5799999999999996
No 59
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6e-28 Score=188.60 Aligned_cols=242 Identities=19% Similarity=0.298 Sum_probs=194.9
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeCCCeE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i 91 (293)
.-.|..|.++|++++. ++.++||||.|-+|+|||+... ...-.+..|.+.|+++.|.+.-+ ..|++|+.||.|
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~----~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR----KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccch----hhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 3456789999999996 5899999999999999999743 22234668999999999976432 367899999999
Q ss_pred EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
.+|+...-.++..+. +.+.+..++.+|.++..++.+.|+.+++|++-.++.-...++......+.|.+.|+.+.+...+
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 999999988887776 4456788999999999999999999999999877766666666666779999999977655432
Q ss_pred -------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE--ccCCCEEEE
Q 022716 171 -------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF--SHTGDYIAS 229 (293)
Q Consensus 171 -------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~s 229 (293)
..+.|+.| -++..+++|.+|+.|.+||.....++..+.+|..+|.++.+ .|++.+|+|
T Consensus 190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENPKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT 268 (362)
T ss_pred EEEEEecccHhHhhhhhccccceeeee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence 12445444 35778999999999999999998889999999999999984 477899999
Q ss_pred ecCCCcEEEEEcCCC-----CEEEEEecCCCcceeEE
Q 022716 230 ASEDLFIDISNVHTG-----RTVHQIPCRAAMNSVEW 261 (293)
Q Consensus 230 ~s~d~~i~iw~~~~~-----~~~~~~~~~~~i~~~~~ 261 (293)
+|.||.|++||+... ..+-.+....+++|+.-
T Consensus 269 aSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 269 ASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred eccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 999999999999765 33444555666777653
No 60
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.7e-29 Score=209.88 Aligned_cols=235 Identities=21% Similarity=0.293 Sum_probs=197.1
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
.-+|.+..|-+--+++++|+.|..||+|+.... .+...+.+|.+.|.+++.||+.+ +++|+|.|-+|++||-+..
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~----ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG----EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccc----eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCc
Confidence 457778888777889999999999999998743 23346889999999999999865 7889999999999998765
Q ss_pred -eeeeeeeecCc-eEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 100 -KCSQQAELSGE-NINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 100 -~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
.|.+.++.+.+ +++++|.| |...+++++-|+++++|.+.+..+.. .+..|..++.|+
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf--------------------Tl~gHekGVN~V 189 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF--------------------TLEGHEKGVNCV 189 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce--------------------eeeccccCcceE
Confidence 56667765554 67899998 45789999999999999987755443 344566777888
Q ss_pred EECCCC--CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-C
Q 022716 177 AIDPMG--RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-R 253 (293)
Q Consensus 177 ~~~~~~--~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~ 253 (293)
++-+-| .+|++|++|.+|++||.++..|++++.+|..-|..+.|+|.=..++|||+||+++||+..+.++.+.+.. -
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl 269 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL 269 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC
Confidence 876644 6999999999999999999999999999999999999999999999999999999999999887766543 3
Q ss_pred CCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 254 AAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 254 ~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
.++.+|+-.+..+.+|.|.+.+.+.+
T Consensus 270 eRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 270 ERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ceEEEEeecCCCCeEEEeccCCcEEE
Confidence 57999999998888999987765543
No 61
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.6e-30 Score=204.34 Aligned_cols=258 Identities=18% Similarity=0.256 Sum_probs=207.3
Q ss_pred eecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 15 EYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
.+.||...|.|++=+|.. ..++||+.||.|+|||+... .....+.+|.+.|..+++.. ..+++++.|.+|+.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR----~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR----ECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ 133 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhh----hhhheeecccCceeeEEecc---cceEEecCCcceee
Confidence 457999999999999987 77899999999999999743 23346889999999999864 45789999999999
Q ss_pred EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce-eeeeEEecCCCEEEEecCCCC
Q 022716 94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ 172 (293)
|.+.. .....+...+....+.-...+..++++++ .|.|||.+...|++...++.+ +.++.++|....++..+..+.
T Consensus 134 wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr 210 (433)
T KOG0268|consen 134 WKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR 210 (433)
T ss_pred eeccC-CcceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence 98765 34455555555556665555667777764 689999998899988888765 677888888777666553321
Q ss_pred ---------------------EEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716 173 ---------------------CYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 173 ---------------------~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 230 (293)
...|+|+|+.-.+++|++|-+++.||++.. +.+....+|...|.+++|||.|+-+++|
T Consensus 211 sIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 211 SIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred ceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 236899998888999999999999999865 4566778899999999999999999999
Q ss_pred cCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 231 SEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 231 s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
|-|.+|+|+....++.-..+.. -..|.++.||-|.+++.+||+|+|++.|..
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999999999988764433322 235899999999999999999987776643
No 62
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.4e-27 Score=205.38 Aligned_cols=246 Identities=14% Similarity=0.139 Sum_probs=183.1
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC-------CCc--eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-------HGK--VKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~-------~~~--~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
|...|.....++++..+++++.+.....|+..... .++ .....+.+|.+.|.+++|+|.+..+|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 45567777778888888888888888888754211 000 001236789999999999995567999999999
Q ss_pred eEEEEeCCCCe-------eeeeee-ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716 90 TVRLWDARSGK-------CSQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 90 ~i~vwd~~~~~-------~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
+|++||+..+. .+..+. +...+.+++|+|++ ..|++++.|++|++||+++......
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~--------------- 163 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEV--------------- 163 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEE---------------
Confidence 99999997642 222333 33457789999985 6899999999999999987553322
Q ss_pred CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEec----CCCc
Q 022716 161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASAS----EDLF 235 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s----~d~~ 235 (293)
+..+...+.+++|+|++.+|++++.|++|++||++++..+.++..|... +..+.|+|++..+++++ .|+.
T Consensus 164 -----l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 164 -----IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred -----EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence 2235567889999999999999999999999999999888888888754 45677899888777654 5899
Q ss_pred EEEEEcCCCCE-EEEEe--cCCCcceeEECCCCCeEEEEEc-CCCCCCCCcceEEEEeeec
Q 022716 236 IDISNVHTGRT-VHQIP--CRAAMNSVEWNPKYNLLAYAGD-DKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 236 i~iw~~~~~~~-~~~~~--~~~~i~~~~~sp~~~~la~~~~-d~~~~~~~~~~~~~~~~~~ 292 (293)
|++||+.+... +.... ....+....|+|++++|+++|. |+ .+|+|++++
T Consensus 239 VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg--------~Iriwdl~~ 291 (493)
T PTZ00421 239 IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG--------NIRCFELMN 291 (493)
T ss_pred EEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC--------eEEEEEeeC
Confidence 99999987543 33322 2234555679999999999885 64 556665543
No 63
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=211.20 Aligned_cols=264 Identities=15% Similarity=0.250 Sum_probs=219.3
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.-++.||.+.|.++++|.+...++||+ .+.+++|+.+... ++. ++. .+.+.+..|.|- ..++++|...|.+.
T Consensus 366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~k--ciR--Ti~--~~y~l~~~Fvpg-d~~Iv~G~k~Gel~ 437 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLK--CIR--TIT--CGYILASKFVPG-DRYIVLGTKNGELQ 437 (888)
T ss_pred eeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcc--eeE--Eec--cccEEEEEecCC-CceEEEeccCCceE
Confidence 355779999999999998887777765 5889999987532 221 121 236778888885 57899999999999
Q ss_pred EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce-------------eeeecccceeeeeEEe
Q 022716 93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-------------IHRRKFGYEVNEIAWN 158 (293)
Q Consensus 93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~-------------~~~~~~~~~~~~v~~~ 158 (293)
++|+.+.......+ +.+...+++..||++.+++|+.|.++++||..--.. .+...+..++-++..+
T Consensus 438 vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 438 VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 99998887666554 556677899999999999999999999999642111 1233456678889999
Q ss_pred cCCCEEEEe---------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716 159 MTGEMFFLT---------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 217 (293)
Q Consensus 159 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 217 (293)
|++.++.+. .|.-++.|+.++|+++.++|||.|.+|++|=++-|.|.+++.+|+..|.+
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 998765532 34567899999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716 218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV 284 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~ 284 (293)
+.|-|....+.++|.|+.++-||......+..+. ++..|.+++-+|+|.+++++|.|++++.|+.+-
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999988888875 567899999999999999999999988887754
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=215.28 Aligned_cols=241 Identities=16% Similarity=0.249 Sum_probs=199.1
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
|....+.|..++|+|.-.+++++--.|.|++||..... ..-.+..|.++|..+.|+|+. .+++|||.|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t----li~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT----LIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh----HHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEe
Confidence 33456789999999999999999999999999987531 112467899999999999985 5899999999999999
Q ss_pred CCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 96 ARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
.++.+|+.++..+ ..+..+.|++.-.++++++.|.+|++|+..+.+.+. .++.|+..+.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia--------------------vltGHnHYVM 139 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA--------------------VLTGHNHYVM 139 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE--------------------EEecCceEEE
Confidence 9999998876544 557789999999999999999999999987765443 3566777889
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCCE-----------------------------EEEEeeccCCCeeEEEEccCCC
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEML-----------------------------CVRTFTKLEWPVRTISFSHTGD 225 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-----------------------------~~~~~~~~~~~v~~l~~sp~~~ 225 (293)
|..|+|....++++|-|.+|++||+...+ .-..+.+|+-.|+-++|+|.-.
T Consensus 140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP 219 (1202)
T ss_pred eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence 99999999999999999999999974210 0124568888999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCCEE--EE-EecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 226 YIASASEDLFIDISNVHTGRTV--HQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~~~~~--~~-~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.+++|++|..|++|-....+.- .+ ..|.+.|.++-|||+.+++.+.|.|+.+++||
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 9999999999999998765543 22 34567899999999999999999997444333
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.6e-29 Score=190.55 Aligned_cols=263 Identities=18% Similarity=0.262 Sum_probs=205.1
Q ss_pred eeecCccccEEEEEEC---CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 14 REYTGHKKKVHSVAWN---CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s---~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
....||..+|..++|| |+|-+|++++.||.=.+-+=+. .-..-.+.+|++.|+..+.+.+ ....+|++.|-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t----gdwigtfeghkgavw~~~l~~n-a~~aasaaadft 82 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT----GDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFT 82 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC----CCcEEeeeccCcceeeeecCch-hhhhhhhcccch
Confidence 3678999999999998 4888999999999877643332 2233468899999999887643 456788999999
Q ss_pred EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc--eeeeecccceeeeeEEecCCCEEEEec
Q 022716 91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
.++||.-+|..+..+++...+..++|+.|.++|++|+.+..++++|++..+ +..-..+...|+.+.|.....-++-..
T Consensus 83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 999999999988888888888999999999999999999999999997654 233334555667776655443332211
Q ss_pred --------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716 169 --------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 169 --------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 228 (293)
...++.++.++++|++|.++. -+.|.+||.++...++.+. ....|.+-+.+|+...++
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFV 240 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-CccccccccccCCCceEE
Confidence 224566778888888766654 4568888888877776653 345688889999999999
Q ss_pred EecCCCcEEEEEcCCCCEEEE--EecCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716 229 SASEDLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 283 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~~~~~--~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~ 283 (293)
+|++|..++.+|..++..+.. ..+.++|.+|.|+|+|...|+||.|+.+++|+..
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 999999999999999988765 4678899999999999999999998544444433
No 66
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=8e-28 Score=191.13 Aligned_cols=247 Identities=18% Similarity=0.228 Sum_probs=199.7
Q ss_pred cccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 10 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
+-....|..|+++|.+++.+|+.++++||+.|....+|++.... ....+.+|++.|.++.|+.+ +.+|+||+-+|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG 128 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHD-GTLLATGDMSG 128 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccC-ceEEEecCCCc
Confidence 44567789999999999999999999999999999999987543 34568899999999999986 57999999999
Q ss_pred eEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 90 TVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
.|+||+..++.....+. --....-+.|+|.+..|++|+.||.+-+|.+.+....+ .+..
T Consensus 129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~k--------------------v~~G 188 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCK--------------------VMSG 188 (399)
T ss_pred cEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceee--------------------EecC
Confidence 99999998887555443 22344568999999999999999999999987742221 2345
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-------------------------------------
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL------------------------------------- 211 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~------------------------------------- 211 (293)
++.++++=.|.|+|+.+++|..||+|++||++++.++..+...
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv 268 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVV 268 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEE
Confidence 6778888889999999999999999999999988665544310
Q ss_pred --------------CCCeeEEEEcc---CCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716 212 --------------EWPVRTISFSH---TGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 212 --------------~~~v~~l~~sp---~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
+..+.++.|.| .=.+.|+|+.||+|.|||....+..+...+..+|..+.|-+ -.+|+++..+
T Consensus 269 ~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~ 347 (399)
T KOG0296|consen 269 NCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACAN 347 (399)
T ss_pred EecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccC
Confidence 11112223333 33577999999999999999988888899999999999998 7799999999
Q ss_pred CCCCCCCc
Q 022716 275 KNKYQADE 282 (293)
Q Consensus 275 ~~~~~~~~ 282 (293)
+++++||-
T Consensus 348 g~v~~wDa 355 (399)
T KOG0296|consen 348 GKVRQWDA 355 (399)
T ss_pred ceEEeeec
Confidence 88888875
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=8.2e-28 Score=194.97 Aligned_cols=238 Identities=21% Similarity=0.362 Sum_probs=198.6
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
..+.++...|..+.++||+.|..+.++|...+ + ....++||...|..+.++|. ...+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q-~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN---Q-ILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh---h-hhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecccccc
Confidence 46888888888789999999999999997643 2 22358899999999999997 4678899999999999987665
Q ss_pred eeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716 101 CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID 179 (293)
Q Consensus 101 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
+.... .+.+++..+..+|.|.||++++.|++....|+++...+...... ..+-..++++||
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~------------------~s~v~~ts~~fH 356 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE------------------TSDVEYTSAAFH 356 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec------------------cccceeEEeeEc
Confidence 54433 35667788999999999999999999999999886654332110 112346789999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--CCcc
Q 022716 180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--AAMN 257 (293)
Q Consensus 180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--~~i~ 257 (293)
|||.++.+|+.|+.|+|||++.+..+..|.+|..+|.+++|+.+|=|||++++|+.|++||++..+..++++.. .+++
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN 436 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence 99999999999999999999998888899999999999999999999999999999999999988777666543 3699
Q ss_pred eeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 258 SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 258 ~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
++.|.+.|.+|+.+|.| ++||.+.
T Consensus 437 s~~fD~SGt~L~~~g~~----------l~Vy~~~ 460 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSD----------LQVYICK 460 (506)
T ss_pred eEEEcCCCCeEEeecce----------eEEEEEe
Confidence 99999999999999876 6666654
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.8e-29 Score=199.60 Aligned_cols=245 Identities=20% Similarity=0.315 Sum_probs=184.8
Q ss_pred CcCcccccc----cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC
Q 022716 3 ESSIPFKNL----HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78 (293)
Q Consensus 3 ~~~~~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 78 (293)
+..|..|+. +.+.++||.+.|.|++|. .+.|++||+|.+|++||+.... ....+.+|-..|..+.|+
T Consensus 216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge----~l~tlihHceaVLhlrf~--- 286 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE----PLNTLIHHCEAVLHLRFS--- 286 (499)
T ss_pred cCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc----hhhHHhhhcceeEEEEEe---
Confidence 445565553 346789999999999984 5699999999999999998542 122466899999999986
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeee---ee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeee
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQ---QA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE 154 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~ 154 (293)
...++|++.|.++.+||+....... .+ .+...+..+.|+ .+++++++.|.++++|++.+...++...
T Consensus 287 ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~------- 357 (499)
T KOG0281|consen 287 NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN------- 357 (499)
T ss_pred CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-------
Confidence 3589999999999999997654221 11 123344556664 5799999999999999998876554322
Q ss_pred eEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC
Q 022716 155 IAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL 234 (293)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~ 234 (293)
.+.-++-|+ -..++++++|++|++|++||+..|.+++.+.+|+.-|.++.| |.+.+++|+.||
T Consensus 358 -------------gHkRGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDG 420 (499)
T KOG0281|consen 358 -------------GHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG 420 (499)
T ss_pred -------------cccccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccc
Confidence 122233333 346899999999999999999999999999999999999999 677899999999
Q ss_pred cEEEEEcCCCCEEE----------EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 235 FIDISNVHTGRTVH----------QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 235 ~i~iw~~~~~~~~~----------~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+|++||+..+...+ ...+.+.|..+.| |.-+|++++-|. ++-||+|.+
T Consensus 421 kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd--------tILiWdFl~ 478 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD--------TILIWDFLN 478 (499)
T ss_pred eEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC--------eEEEEEcCC
Confidence 99999998764321 1234456777888 555677777663 566777765
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.8e-28 Score=197.32 Aligned_cols=239 Identities=17% Similarity=0.262 Sum_probs=194.5
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
+.-.+..|.++.|-.||+.|+.|+..|.|++||..+ +.....+.+|+.++..+.|+|.+...|++|+.|+.+++||
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 445567899999999999999999999999999542 2233356789999999999999888999999999999999
Q ss_pred CCCCeeeeeee-ecCceEEEEEcCC-CCEEEEEeCCCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716 96 ARSGKCSQQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
+.+......+. +...+.+.+++|. +..+++|+.||+|++||+|.. ....+..++. +
T Consensus 140 ~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~---------------------p 198 (487)
T KOG0310|consen 140 LSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC---------------------P 198 (487)
T ss_pred cCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC---------------------c
Confidence 98876432222 3456778889885 457899999999999999986 4444444433 4
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716 173 CYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 251 (293)
+-.+.+-|.|..+|+++. +.+++||+-++ ..+..+..|...|+|+++..+++.|++||.|+.++++|+.+.+.++.+.
T Consensus 199 Ve~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 199 VESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK 277 (487)
T ss_pred eeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee
Confidence 445666788888888874 47999999855 4444555599999999999999999999999999999998899999999
Q ss_pred cCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716 252 CRAAMNSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 252 ~~~~i~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
..++|-+++.+|++..++.|-.|+-+-+.
T Consensus 278 ~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 278 YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred cccceeeEEecCCCceEEEecccceeeee
Confidence 99999999999999999999888755443
No 70
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=186.05 Aligned_cols=221 Identities=21% Similarity=0.299 Sum_probs=179.3
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
.++||+++|+.+.|.+|++.++++|.|.+++.||.+... ...+.++|.+.|+.+.-...+..++.|++.|+++++|
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~----~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK----RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccce----eeehhccccceeeecCccccCCeEEEecCCCceEEEE
Confidence 357999999999999999999999999999999998532 3346789999999988655667789999999999999
Q ss_pred eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCC------------
Q 022716 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG------------ 161 (293)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~------------ 161 (293)
|+++..+.+.++...+..++.|..++..+.+|+-|+.|++||+|....+.... +.-.|..+..++.+
T Consensus 161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceE
Confidence 99998888887777888899999999999999999999999998766554432 22223333322222
Q ss_pred ------------CEEE-EecCC----CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716 162 ------------EMFF-LTTGN----AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224 (293)
Q Consensus 162 ------------~~~~-~~~~~----~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 224 (293)
+.+. ...+. ......+++|+++.+..|+.|..+++||......+..+.+|...|++++|+|..
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC
Confidence 2111 11111 123456899999999999999999999998888899999999999999999999
Q ss_pred CEEEEecCCCcEEEE
Q 022716 225 DYIASASEDLFIDIS 239 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw 239 (293)
..+.+++.|.+|++=
T Consensus 321 ~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 321 PIILSCSSDKTIYLG 335 (338)
T ss_pred cEEEEeccCceeEee
Confidence 999999999998864
No 71
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.1e-26 Score=201.28 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=164.9
Q ss_pred EeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee--------eeeee-ec
Q 022716 38 GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC--------SQQAE-LS 108 (293)
Q Consensus 38 ~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--------~~~~~-~~ 108 (293)
|+.++.+++|+.... .....+.+|.+.|.+++|+|....+|+||+.|+.|++||+.++.. ...+. +.
T Consensus 50 GG~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 667889999987542 223467899999999999997678999999999999999975421 11222 34
Q ss_pred CceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716 109 GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (293)
..+.+++|+|++..+ ++++.|++|++||+++....... .+...+.+++|+|+|.+|++
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i---------------------~~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI---------------------NMPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE---------------------ecCCcEEEEEECCCCCEEEE
Confidence 567789999998765 68899999999999876533221 12345788999999999999
Q ss_pred ecCCCcEEEEeCCCCEEEEEeeccCCCeeE-----EEEccCCCEEEEecCCC----cEEEEEcCC-CCEEEEEecCCCcc
Q 022716 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRT-----ISFSHTGDYIASASEDL----FIDISNVHT-GRTVHQIPCRAAMN 257 (293)
Q Consensus 188 gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~-----l~~sp~~~~l~s~s~d~----~i~iw~~~~-~~~~~~~~~~~~i~ 257 (293)
++.|+.|+|||++++..+.++.+|...+.+ ..|++++.+|++++.|+ .|+|||+.. ++.+..+..+....
T Consensus 185 ~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~ 264 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA 264 (568)
T ss_pred EecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc
Confidence 999999999999999999899999876543 34568999999887664 799999985 55565555544443
Q ss_pred ee---EECCCCCeEEEEEcCCCCCCCC
Q 022716 258 SV---EWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 258 ~~---~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.+ -..+++.++++|+.|+++++|+
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 33 3355688899998886555443
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.3e-28 Score=209.93 Aligned_cols=218 Identities=23% Similarity=0.334 Sum_probs=174.6
Q ss_pred cccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 8 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
|...+.+.|.||.+.|.+|.||.++ +|+|+|.|.+||+|++... ..++.-.|++.|+|++|+|.+.++|+||+-
T Consensus 357 f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~-----~CL~~F~HndfVTcVaFnPvDDryFiSGSL 430 (712)
T KOG0283|consen 357 FSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK-----ECLKVFSHNDFVTCVAFNPVDDRYFISGSL 430 (712)
T ss_pred ccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc-----ceeeEEecCCeeEEEEecccCCCcEeeccc
Confidence 5566778899999999999999765 8999999999999998743 334566899999999999999999999999
Q ss_pred CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716 88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 167 (293)
|+.+|||++...+.......+..+++++|.|||+..++|+.+|.+++|+++..+....... ...... -.
T Consensus 431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I-------~~~~~K----k~ 499 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI-------RLHNKK----KK 499 (712)
T ss_pred ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE-------eeccCc----cc
Confidence 9999999998877777777888899999999999999999999999999887664433211 000000 00
Q ss_pred cCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCC--CeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 168 TGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEW--PVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
. ...|+.+-+.|.. ..|++.+.|..|+|||.++...+..|+++.. .-..-.|+.||++++++++|..|+||+...
T Consensus 500 ~-~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 500 Q-GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred c-CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 1 1146666666543 3688889999999999987777788887654 334567999999999999999999999743
No 73
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-26 Score=181.21 Aligned_cols=259 Identities=23% Similarity=0.434 Sum_probs=187.1
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE-cCCCCCEEEEEeCCCeEEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~~l~s~~~d~~i~vw 94 (293)
-.+|+.-|+|+.|++.|+++||++.|++|+|||.+.....=......+.|.+.|..+.| +|+-++.+++++.|++++||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 46899999999999999999999999999999975433222334468899999999999 77778899999999999999
Q ss_pred eCCCC--ee-----eee---eeecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716 95 DARSG--KC-----SQQ---AELSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 95 d~~~~--~~-----~~~---~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
.-... ++ ... ....+.+..+.|.|. |-.|++++.||.+++|+......+....+..+++.+. +|.
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~-~pp-- 165 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI-DPP-- 165 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc-CCc--
Confidence 76311 11 111 123566788999885 6688999999999999976543333322222222111 011
Q ss_pred EEEEecCCCCEEEEEECCC---CCEEEEecCC-----CcEEEEeCC----CCEEEEEeeccCCCeeEEEEccCC----CE
Q 022716 163 MFFLTTGNAGCYCIAIDPM---GRYFAVGSAD-----SLVSLWDIS----EMLCVRTFTKLEWPVRTISFSHTG----DY 226 (293)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d-----~~i~iwd~~----~~~~~~~~~~~~~~v~~l~~sp~~----~~ 226 (293)
.....++.|+.++|. ...+|+|+.+ +.+.||... +...+.++.+|..+|+.|+|+|+- ..
T Consensus 166 ----~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 166 ----GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred ----ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 122345667777764 3567877766 588999764 334566788899999999999973 57
Q ss_pred EEEecCCCcEEEEEcCCCC-----------------EE---EEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 227 IASASEDLFIDISNVHTGR-----------------TV---HQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 227 l~s~s~d~~i~iw~~~~~~-----------------~~---~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
||+++.|| |+||.+..-. .+ ..+. |...+..+.|+-.|..|+++|+||-++.|..
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99999999 9999987311 11 2232 4558999999999999999999975555544
No 74
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=7.8e-27 Score=208.04 Aligned_cols=255 Identities=20% Similarity=0.287 Sum_probs=197.0
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC------C-C------c-eeEEEeeCCcCCeeEEEEcCCCCC
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------H-G------K-VKDIELRGHADSVDQLCWDPKHAD 80 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~------~-~------~-~~~~~~~~h~~~i~~~~~~~~~~~ 80 (293)
....|.+.|.|+.|+|||.+||+||.|+.|.||+..... . + . .....+.+|...|.++.|+|+ ..
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~ 142 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DS 142 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-cc
Confidence 345799999999999999999999999999999987310 0 0 0 123457899999999999996 57
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716 81 LIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM 159 (293)
Q Consensus 81 ~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~ 159 (293)
+|+|++.|.+|.+||.++.++...+. +.+.+..+.|.|-|+++++-+.|+++++|++.+....+...-+++ .
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-------~ 215 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-------E 215 (942)
T ss_pred EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh-------h
Confidence 99999999999999999988877776 456788999999999999999999999999766444333221110 0
Q ss_pred CCCEEEEecCCCCEEEEEECCCCCEEEEecCC----CcEEEEeCCCCEEEEEeeccCCCeeEEEEccC-----CC-----
Q 022716 160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD----SLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-----GD----- 225 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-----~~----- 225 (293)
........-+.|+|||.+|++..+- .++.|.+-.+...-..+.+|..++..++|+|. .+
T Consensus 216 -------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 216 -------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred -------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 0001123456788899888887542 36888888888777889999999999999982 11
Q ss_pred -------EEEEecCCCcEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 226 -------YIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 226 -------~l~s~s~d~~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.+|+||.|+.|.||.....+.+.... ...+|.+++|+|||-.|..+|.|+ ++.+.+||+
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DG--------tV~~i~Fee 356 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG--------TVALIHFEE 356 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCC--------eEEEEEcch
Confidence 57999999999999998777654432 245799999999999999999995 455555553
No 75
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=3.6e-26 Score=178.16 Aligned_cols=246 Identities=19% Similarity=0.263 Sum_probs=186.7
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
...|+++.|+|.+..|+.+++||++++||+.... ... .-.|..++.+.+|.+. ..+++|+-||.|+++|+.++
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~-~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKL-KFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhh-heecCCceeeeeccCC--ceEEEeccCceEEEEEecCC
Confidence 4689999999999999999999999999997541 111 2258889999999863 56889999999999999998
Q ss_pred eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC---------
Q 022716 100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN--------- 170 (293)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--------- 170 (293)
.......+...+.++.+.+....+++|+.|++|++||.|..........+..|.++ +..++.+++.+.+
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~--~v~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCM--DVSGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEE--eccCCEEEEeecCceEEEEEcc
Confidence 87666667778889999988889999999999999999974443333222222222 2233333332211
Q ss_pred --------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCC----EEEEEeecc---------CCCeeEEEEccC
Q 022716 171 --------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----LCVRTFTKL---------EWPVRTISFSHT 223 (293)
Q Consensus 171 --------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~----~~~~~~~~~---------~~~v~~l~~sp~ 223 (293)
-.+-|+++.|++.-+++++-||.|.+=..+.. ..-..|+-| -.||++|+|+|-
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 12458888898888899999998877444332 112223322 248999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcC
Q 022716 224 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d 274 (293)
.+.||||+.||.|.+||....+.+.++.- ..+|.+++|+-+|..||.|+.-
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 99999999999999999999888877753 4679999999999999999864
No 76
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.6e-25 Score=183.79 Aligned_cols=223 Identities=31% Similarity=0.520 Sum_probs=184.8
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
...+.+|...+.++.|+|+++.|++++.||.|++|++.... ....+..|...+.++.|+++ ..++++++.|+.++
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~ 118 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE----CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIK 118 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc----ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEE
Confidence 35677899999999999999999999999999999997531 22345688889999999987 56888887899999
Q ss_pred EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc-cceeeeeEEecCCCEEEEecC-
Q 022716 93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTG- 169 (293)
Q Consensus 93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~- 169 (293)
+||+.+++....+. ....+.++.++|++.++++++.++.+.+||++..++...... ...+..+.|++.+..+++...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred EEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC
Confidence 99999877766655 345678899999988888888899999999987766555443 346788888887755544332
Q ss_pred --------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEE
Q 022716 170 --------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 229 (293)
Q Consensus 170 --------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 229 (293)
...+.+++++|++.++++++.|+.|++||+.++.....+..|...+.+++|+|++++|++
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 235778999999999999998999999999988888888888889999999999999999
Q ss_pred ecCCCcEEEEE
Q 022716 230 ASEDLFIDISN 240 (293)
Q Consensus 230 ~s~d~~i~iw~ 240 (293)
++.|+.+++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2e-26 Score=201.81 Aligned_cols=235 Identities=25% Similarity=0.444 Sum_probs=194.7
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
+.||.+.|.+++|..-++.|++|+.|.++|+||..+.. ....+.+|...|.++...+ .++++|+.|.+|++|+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~----C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE----CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWD 317 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEe
Confidence 78999999999998778899999999999999976532 3345779999999998653 4788899999999999
Q ss_pred CCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
+.++.++.... +.+.+.++... +..+++|+.|++|++||++..+.++. +..|...++
T Consensus 318 v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s--------------------l~gH~~~V~ 375 (537)
T KOG0274|consen 318 VTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS--------------------LSGHTGRVY 375 (537)
T ss_pred ccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee--------------------ecCCcceEE
Confidence 99999988887 66777788776 78999999999999999997776654 334667788
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR 253 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~ 253 (293)
++.+.+. ..+++|+.|++|++||+++. +++.++.+|..-+..+. ..+++|++++.|+.|++||..+++.++.+..+
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCceeeeeccC
Confidence 8877666 89999999999999999999 89999999988776554 47889999999999999999999999888763
Q ss_pred --CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 254 --AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 254 --~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
..|..+++. ...++.++.| +.+++|++++
T Consensus 453 ~~~~v~~l~~~--~~~il~s~~~--------~~~~l~dl~~ 483 (537)
T KOG0274|consen 453 HVGGVSALALG--KEEILCSSDD--------GSVKLWDLRS 483 (537)
T ss_pred CcccEEEeecC--cceEEEEecC--------CeeEEEeccc
Confidence 567777765 4567777766 4566666653
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.8e-27 Score=187.13 Aligned_cols=207 Identities=24% Similarity=0.392 Sum_probs=172.2
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---------------------CCceeEEEeeCCcCCeeEEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------------------HGKVKDIELRGHADSVDQLCW 74 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---------------------~~~~~~~~~~~h~~~i~~~~~ 74 (293)
..||++.|.+++..++|.++++||.|.+++||+.+... ..+...+.+.||..+|.++.|
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 34999999999999999999999999999999943211 011223468899999999999
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeee
Q 022716 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE 154 (293)
Q Consensus 75 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~ 154 (293)
.+ ...++|+++|.+|+.||+.++.+...........++.++|..++|++|+.|..+++||.|+..-.-
T Consensus 269 ~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~---------- 336 (423)
T KOG0313|consen 269 SD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV---------- 336 (423)
T ss_pred cC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce----------
Confidence 86 467899999999999999999988888878888899999999999999999999999998753100
Q ss_pred eEEecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716 155 IAWNMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASE 232 (293)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 232 (293)
+ ..-+..|..-+.++.++|... .|++|+.||++++||++... ++..+.+|...|.++.|+ ++.++++|+.
T Consensus 337 v-------~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGa 408 (423)
T KOG0313|consen 337 V-------SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGA 408 (423)
T ss_pred e-------EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccC
Confidence 0 112345566677888888764 58999999999999999876 889999999999999996 5779999999
Q ss_pred CCcEEEEEcC
Q 022716 233 DLFIDISNVH 242 (293)
Q Consensus 233 d~~i~iw~~~ 242 (293)
|.+|+|+...
T Consensus 409 D~~l~i~~~~ 418 (423)
T KOG0313|consen 409 DNKLRIFKGS 418 (423)
T ss_pred cceEEEeccc
Confidence 9999998653
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-26 Score=195.64 Aligned_cols=236 Identities=22% Similarity=0.375 Sum_probs=188.5
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC-CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
+...|+++.|+++|..|+.|..+|.|.|||....... ..+.+ |...|.+++|+ ...+.+|+.|+.|..+|++
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~----~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT----RTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc----ccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEe
Confidence 3789999999999999999999999999998754321 23445 99999999997 3578899999999999998
Q ss_pred CCeeeee-ee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 98 SGKCSQQ-AE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 98 ~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
..+.... +. +...+..+.|++|++++++|+.|+.+.+||.....+. ..+..+.+.+.+
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~--------------------~~~~~H~aAVKA 348 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK--------------------FTFTEHTAAVKA 348 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc--------------------EEEeccceeeeE
Confidence 7765443 33 3445667999999999999999999999998554443 334455666777
Q ss_pred EEECCC-CCEEEEe--cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec--CCCcEEEEEcCCCCEEEEE
Q 022716 176 IAIDPM-GRYFAVG--SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--EDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 176 ~~~~~~-~~~l~~g--s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~d~~i~iw~~~~~~~~~~~ 250 (293)
++|+|- ...||+| +.|++|++||..++.++..+ .....|.+|.|++..+-|+++. .++.|.||+..+.+.+..+
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l 427 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL 427 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee
Confidence 777774 4667776 57999999999999888765 3446899999999987776653 5678999999997777665
Q ss_pred -ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 251 -PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 251 -~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
.|..+|-.+++||+|..+++|+.|. ++|+|++
T Consensus 428 ~gH~~RVl~la~SPdg~~i~t~a~DE--------Tlrfw~~ 460 (484)
T KOG0305|consen 428 LGHTSRVLYLALSPDGETIVTGAADE--------TLRFWNL 460 (484)
T ss_pred cCCcceeEEEEECCCCCEEEEecccC--------cEEeccc
Confidence 4566799999999999999999984 5666654
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.9e-27 Score=188.02 Aligned_cols=226 Identities=17% Similarity=0.243 Sum_probs=172.9
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+++.||..+|..+.||||+++|++++.|..+++||+.....-. ..-.+|...+.+++|.|++ ..+++|+.|+.+.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~---~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH---LYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh---hcccCcCCCcceeEEccCC-ceeEecCCCCcEE
Confidence 56778999999999999999999999999999999998643211 1223455778999999985 5688999999999
Q ss_pred EEeCCCCeeeeeee-e-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 93 LWDARSGKCSQQAE-L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 93 vwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
.||++... ....+ . ...+..++.++||+++++.+.|..+++++...............+..+..+.++.+..+.-..
T Consensus 338 ~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 338 MWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred EecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence 99987543 22222 1 134668999999999999999999999998765544444445556666655555544432211
Q ss_pred CC-----------------------EEEEEEC-CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-
Q 022716 171 AG-----------------------CYCIAID-PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD- 225 (293)
Q Consensus 171 ~~-----------------------~~~~~~~-~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~- 225 (293)
.. +.--+|. .+..++++||+|+.|+||+..++..+..+.+|...|++++|+|...
T Consensus 417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence 10 1111232 3558999999999999999999999999999999999999999765
Q ss_pred EEEEecCCCcEEEEEcCC
Q 022716 226 YIASASEDLFIDISNVHT 243 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~ 243 (293)
.+|+||+||+|+||....
T Consensus 497 m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 497 MFASASDDGTIRIWGPSD 514 (519)
T ss_pred HhhccCCCCeEEEecCCc
Confidence 689999999999998764
No 81
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.4e-25 Score=172.11 Aligned_cols=204 Identities=23% Similarity=0.383 Sum_probs=164.9
Q ss_pred EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC---eeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEE
Q 022716 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG---KCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTI 134 (293)
Q Consensus 60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l 134 (293)
..+++|.+.+..++|+|-.+.+|+||+.|..|++|+...+ .|...+. +.-.+.+++|+|.|++|++++-|.++.+
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 3578999999999999964568999999999999998753 3333321 3345678999999999999999999999
Q ss_pred EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC---CCEEEEEeecc
Q 022716 135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS---EMLCVRTFTKL 211 (293)
Q Consensus 135 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~---~~~~~~~~~~~ 211 (293)
|.=.... +++ .-.+..++..+.|++|+++|++||+++.|+.|.||.+. ..++...+++|
T Consensus 88 w~k~~~e--------fec----------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 88 WKKEDGE--------FEC----------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred eecCCCc--------eeE----------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9733211 000 12345667788999999999999999999999999986 35677888999
Q ss_pred CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC---CEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTG---RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~---~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
...|..+.|+|...+|+++|.|++|++|.-..+ ....++.. ...|.+++|+|.|+.|+++++|+++.+|-
T Consensus 150 tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 150 TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 999999999999999999999999999988743 34556654 44899999999999999999997666554
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.1e-27 Score=201.15 Aligned_cols=253 Identities=19% Similarity=0.300 Sum_probs=199.4
Q ss_pred CccccEE---EEEECC-CCCeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 18 GHKKKVH---SVAWNC-TGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 18 ~h~~~v~---~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
+|...|. .+..+. .+++|.|||.||.|++|++...... ......++.|.+-|+.+..... ++.|+|+|.|-+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTV 97 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceE
Confidence 5555565 666664 4556999999999999998643221 2223456789999998887654 4578899999999
Q ss_pred EEEeCCCC--eeeeee-eecCceEEEEE-cCCCCEEEEEeCCCeEEEEEccccce--eeeecccceeeeeEEecCCCEEE
Q 022716 92 RLWDARSG--KCSQQA-ELSGENINITY-KPDGTHIAVGNRDDELTILDVRKFKP--IHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 92 ~vwd~~~~--~~~~~~-~~~~~~~~~~~-~~~~~~l~~~~~d~~i~l~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
++|+...+ -|...+ .+...+.++++ .++...+++|+-|+.|.+||++.... +..... ..++ ..
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~-~t~~----------sl 166 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNN-VTVN----------SL 166 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccc-cccc----------cC
Confidence 99998766 344444 35567788888 78888999999999999999986532 111100 0000 01
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~ 245 (293)
..+...+++++|.++.+..+++|+.++.+++||.+++..+..+.+|..-|+.+..++||+.++++|.||+|++||+...+
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc
Confidence 11445679999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred EEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 246 TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 246 ~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
.+..+. +...+.++.-+|+-.++-+|+.|++++--+.
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence 888765 4556899999999999999999998876544
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.7e-26 Score=185.70 Aligned_cols=247 Identities=23% Similarity=0.378 Sum_probs=185.6
Q ss_pred ecCccccEEEEEECCCCCe-EEEEeCCCcEEEeecCCCCCC------ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 16 YTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHG------KVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
.--|.+.|..+.+-|+... +|+++..+.|.|||....... ....+.+.+|.+.-+.++|++.....|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3468899999999998865 567788999999998754321 123357889999888999999887889999999
Q ss_pred CeEEEEeCCCCee----e---eeeeec-CceEEEEEcCCC-CEEEEEeCCCeEEEEEcccc--ceeeeecccceeeeeEE
Q 022716 89 KTVRLWDARSGKC----S---QQAELS-GENINITYKPDG-THIAVGNRDDELTILDVRKF--KPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 89 ~~i~vwd~~~~~~----~---~~~~~~-~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~--~~~~~~~~~~~~~~v~~ 157 (293)
++|++||+..... + ..+..+ ..+-.++|+|-. ..+++++.|+.+.|||+|+. ++.+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~------------- 266 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH------------- 266 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc-------------
Confidence 9999999965532 1 122222 334458888744 56788889999999999962 2211
Q ss_pred ecCCCEEEEecCCCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCC-CEEEEecCCC
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTG-DYIASASEDL 234 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~ 234 (293)
....+.+.+.|++|+|- +..||+||.|++|.+||+++. .++.++.+|+..|..|.|||.. ..||+++.|+
T Consensus 267 -------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 267 -------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred -------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 12245567788888886 467899999999999999875 4678899999999999999985 5789999999
Q ss_pred cEEEEEcCC-CCE------------EEEE--ecCCCcceeEECCCCCe-EEEEEcCCCCCCCCcceEEEEee
Q 022716 235 FIDISNVHT-GRT------------VHQI--PCRAAMNSVEWNPKYNL-LAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 235 ~i~iw~~~~-~~~------------~~~~--~~~~~i~~~~~sp~~~~-la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
.+.+||+.. +.. +..+ .++..|+.++|+|.... |++.+.| ..++||++
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD--------N~LqIW~~ 403 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED--------NILQIWQM 403 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC--------ceEEEeec
Confidence 999999864 211 1112 34567999999998865 7777777 45666665
No 84
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=5.4e-25 Score=205.56 Aligned_cols=218 Identities=17% Similarity=0.295 Sum_probs=168.9
Q ss_pred ccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 19 h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
+...|.+++|++. +.+|++++.||+|++||+... .....+.+|.+.|++++|+|.++.+|+||+.|+.|++||++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 4568999999874 789999999999999998742 12345678999999999998667799999999999999999
Q ss_pred CCeeeeeeeecCceEEEEEc-CCCCEEEEEeCCCeEEEEEccccc-eeee-ecccceeeeeEEecCCCEEE---------
Q 022716 98 SGKCSQQAELSGENINITYK-PDGTHIAVGNRDDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFF--------- 165 (293)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~l~d~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~--------- 165 (293)
++.+...+..+..+.++.|. +++..+++|+.|+.|++||+++.. +... ..+...+..+.|.. +..+.
T Consensus 607 ~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~~~lvs~s~D~~ik 685 (793)
T PLN00181 607 QGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-SSTLVSSSTDNTLK 685 (793)
T ss_pred CCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-CCEEEEEECCCEEE
Confidence 98887777766677888884 579999999999999999998654 2222 22334555565542 22211
Q ss_pred ------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-------------eccCCC
Q 022716 166 ------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-------------TKLEWP 214 (293)
Q Consensus 166 ------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-------------~~~~~~ 214 (293)
+..+...+.+++++|++.+|++|+.|+.|.+|+......+..+ ..+...
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 2223344567899999999999999999999997654322211 223456
Q ss_pred eeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 215 VRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 215 v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
|.+++|+|++.+|++|+.||.|+||++
T Consensus 766 V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999999985
No 85
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.3e-26 Score=185.69 Aligned_cols=228 Identities=18% Similarity=0.308 Sum_probs=179.5
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
.+|.+.|.+++.|+||++||||+.|..|.||+.++.. ....+.+|.+.|.+++|-. +.+.+++++.|..+++|++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e----hv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE----HVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSI 273 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc----hhhcccccccceeeeeeec-CccceeeeecCCceEEEeh
Confidence 4899999999999999999999999999999987532 1224789999999999953 5667899999999999999
Q ss_pred CCCeeeee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 97 RSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 97 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
+.-..+.+ +.++..+..+....-++-+-+|+.|.++++|++.... .+.+..+.+.+-|
T Consensus 274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---------------------qlifrg~~~sidc 332 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---------------------QLIFRGGEGSIDC 332 (479)
T ss_pred hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc---------------------eeeeeCCCCCeee
Confidence 76554443 3355666777766667777788899999999984321 1233344556677
Q ss_pred EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-c-----------CCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-L-----------EWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~-----------~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
++|- +..++++|+++|.|.+|++.+..++.+... | ..+|++|+..|...++|+||.+|.|++|.+.+
T Consensus 333 v~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 333 VAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 7774 567899999999999999988776654321 1 23799999999999999999999999999998
Q ss_pred C----CEEEEEecCCCcceeEECCCCCeEEEE
Q 022716 244 G----RTVHQIPCRAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 244 ~----~~~~~~~~~~~i~~~~~sp~~~~la~~ 271 (293)
+ ..+..++..+-|++|.|+++|..+++|
T Consensus 412 g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 412 GLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred CccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 7 334556667789999999999865555
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=174.66 Aligned_cols=229 Identities=20% Similarity=0.273 Sum_probs=188.8
Q ss_pred EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee---cCceEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 022716 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL---SGENINITYKP-DGTHIAVGNRDDELTILD 136 (293)
Q Consensus 61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d 136 (293)
.+.+|...|.+++|+.++ ..|++|+.|+++++|++...+....... .+.+..++|+| ....+++.+.|.++++||
T Consensus 15 ~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 466899999999999875 5789999999999999987755444332 23455677775 456899999999999999
Q ss_pred ccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE--------------------EEEECCCCCEEEEecCCCcEEE
Q 022716 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY--------------------CIAIDPMGRYFAVGSADSLVSL 196 (293)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~l~~gs~d~~i~i 196 (293)
+|..++..+.....+-..+.|+|.++.+.+...+..++ -++++-++..+...+..|+|.|
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEE
Confidence 99999998887777777789999999888777665433 4566666777777777899999
Q ss_pred EeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCC
Q 022716 197 WDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 197 wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
-.....+++.+++.|.....+|.|+|+|+|+|+|+.|..+.+||+..--.++.+. +.=||+.|+||-+|++||+||.|-
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence 9999999999999999888999999999999999999999999998766666554 345899999999999999999999
Q ss_pred CCCCCCcceE-EEEee
Q 022716 276 NKYQADEGVF-RIYGF 290 (293)
Q Consensus 276 ~~~~~~~~~~-~~~~~ 290 (293)
.+=|++-.+. |||.+
T Consensus 254 ~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 254 FIDIAEVETGDRVWEI 269 (313)
T ss_pred eEEeEecccCCeEEEe
Confidence 8888776555 78875
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-25 Score=176.60 Aligned_cols=237 Identities=19% Similarity=0.281 Sum_probs=170.7
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCc--eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK--VKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~--~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..++||++.|++++|+.||+.|||++.|+.|++|+++...... .....++ -+.-+.+.|.|+-..+++++-....+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEE
Confidence 4578999999999999999999999999999999987532111 1111111 12356788999887888888888899
Q ss_pred EEEeCCCC---eeeee--------e--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716 92 RLWDARSG---KCSQQ--------A--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 92 ~vwd~~~~---~~~~~--------~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~ 158 (293)
++|.+... ..... + .+...++.+-....++++++++.|..|.+|+++. +.+....
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~~id----------- 225 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQSID----------- 225 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceeeeec-----------
Confidence 99976322 11110 1 1122345566677889999999999999999984 3333211
Q ss_pred cCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC---CCC-----EEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716 159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI---SEM-----LCVRTFTKLEWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~---~~~-----~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 230 (293)
.....-+..+++|+|+++++++----|++|.+ +.+ .++.++++|...|.+.+|||+.+.++|.
T Consensus 226 ---------tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 226 ---------TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ---------cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 11222345788999999999988888999985 233 2345788999999999999999999999
Q ss_pred cCCCcEEEEEcCCCCE-------EEEE--e---cCCCcceeEECCCCCeEEEEEc
Q 022716 231 SEDLFIDISNVHTGRT-------VHQI--P---CRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 231 s~d~~i~iw~~~~~~~-------~~~~--~---~~~~i~~~~~sp~~~~la~~~~ 273 (293)
|.||.++|||..-... ++.. + ..+.-..++.+|+|..||.+..
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g 351 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG 351 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC
Confidence 9999999999864321 2211 1 1122237999999999998864
No 88
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.6e-25 Score=196.18 Aligned_cols=230 Identities=21% Similarity=0.341 Sum_probs=186.5
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
|...+.+..|. +..+++++.|+++++|+... .......+.||.+.|.++.+.. +..++++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~---~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN---GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeeccc---ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC
Confidence 56789999988 56899999999999999864 2333445889999999999854 568999999999999999999
Q ss_pred CeeeeeeeecCceE-EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716 99 GKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177 (293)
Q Consensus 99 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
+.|...+..+.... ++.. .+..+++|+.|.+|++|++.+...++... .+.+++.++.
T Consensus 281 g~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~--------------------~h~~~V~~v~ 338 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLR--------------------GHTGPVNCVQ 338 (537)
T ss_pred CcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEec--------------------cccccEEEEE
Confidence 99999887554433 3433 34577888999999999998766655432 2455666777
Q ss_pred ECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC-CEEEEEecCCCc
Q 022716 178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRAAM 256 (293)
Q Consensus 178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~i 256 (293)
++ +.++++|+.|++|++||+..+++++++++|..+|.++.+.+. ..+++|+.|+.|++||+.+. +.+..+..+..+
T Consensus 339 ~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 339 LD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred ec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 65 889999999999999999999999999999999999987665 89999999999999999998 788887766554
Q ss_pred ceeEECCCCCeEEEEEcCCCCCCC
Q 022716 257 NSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 257 ~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
. -.....+++|.+++.|+.+++|
T Consensus 416 v-~~l~~~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 416 V-SSLLLRDNFLVSSSADGTIKLW 438 (537)
T ss_pred c-cccccccceeEeccccccEEEe
Confidence 3 2334478899999999755444
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-25 Score=183.15 Aligned_cols=205 Identities=22% Similarity=0.326 Sum_probs=172.6
Q ss_pred ceeecCccccEEEEEECCCCCe-EEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
.+.+.+|.++|+...|+|+++. |++|+.|+.+++||+... .....+.+|++.|.+.+++|.....++|||.||+|
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a----~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA----YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----EEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 4668899999999999998765 678999999999999742 23567899999999999999888899999999999
Q ss_pred EEEeCCCC-eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 92 RLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 92 ~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
++||++.. ..+..+.+..++-.+.+-|.|..+++++ .+.+++||+-++..+-. ....|.
T Consensus 179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~-------------------~~~~H~ 238 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLT-------------------SMFNHN 238 (487)
T ss_pred EEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehh-------------------hhhccc
Confidence 99999887 5556667777788899999999888886 57899999875432211 122366
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
..++|+.+..++..|++|+-|+.+++||+.+.+.++.+ ....||.+++.+|+++.++.|-.||.+.+-...
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ceEEEEEeecCCceEeecccccceEEEEccceEEEEee-ecccceeeEEecCCCceEEEecccceeeeehhh
Confidence 77899999999999999999999999999998888877 567899999999999999999999998776443
No 90
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=9.4e-24 Score=175.84 Aligned_cols=245 Identities=13% Similarity=0.124 Sum_probs=176.7
Q ss_pred CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCce
Q 022716 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN 111 (293)
Q Consensus 32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 111 (293)
++.++|++.|+.+++||+.... . ...+..+. .+..+.|+|++..++++++.++.|++||..+++....+.....+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~--~--~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE--V--TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc--e--EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence 3568899999999999986432 1 12334443 35678999976545577788999999999988776655544456
Q ss_pred EEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC-------------------
Q 022716 112 INITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA------------------- 171 (293)
Q Consensus 112 ~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------- 171 (293)
..++++|+++.++++ +.++.+.+||+++...+.....+..+..+.|++++..+.......
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 678899999977665 458999999998877666555455567788888877655443221
Q ss_pred --CEEEEEECCCCCEEEEe-cCCCcEEEEeCCCCEEEEEeeccC-------CCeeEEEEccCCCEEEE-ecCCCcEEEEE
Q 022716 172 --GCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTKLE-------WPVRTISFSHTGDYIAS-ASEDLFIDISN 240 (293)
Q Consensus 172 --~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~l~~sp~~~~l~s-~s~d~~i~iw~ 240 (293)
....++++|++++++++ ..++.|.+||+++++.+..+..+. .....++|+|++++++. .+.++.+.+||
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 22357889999987544 569999999999887766553221 12356889999998644 45667899999
Q ss_pred cCCCCEEEEEecCCCcceeEECCCCCeEEEEE-cCCCCCCCC
Q 022716 241 VHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG-DDKNKYQAD 281 (293)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~-~d~~~~~~~ 281 (293)
..+++.+........+.+++|+|++++|++++ .++.+.+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 236 AKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 99988776665566799999999999988875 354444333
No 91
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-25 Score=180.88 Aligned_cols=260 Identities=18% Similarity=0.310 Sum_probs=209.8
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
+.|+++.|+|.-..|++|+.||+++||.++....+.+..+.+. .-+|.+..|.|.+...+++++.-.....||+.+++
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 6899999999999999999999999999987655555555554 46799999999887689999999999999998876
Q ss_pred eeeeeeecC----ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC----
Q 022716 101 CSQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG---- 172 (293)
Q Consensus 101 ~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---- 172 (293)
....-...+ .......+|++++++..+..|-|.+.-..+.+.+...+....+..+.|+.+++.+++.++.+.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 543322222 223467789999999999999999999999998888888889999999988877776654432
Q ss_pred ------------------EEEEEECCCCCEEEEecCCCcEEEEeCCC------CEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716 173 ------------------CYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 173 ------------------~~~~~~~~~~~~l~~gs~d~~i~iwd~~~------~~~~~~~~~~~~~v~~l~~sp~~~~l~ 228 (293)
-++++.++++.+||+||..|.|+|||.++ .+++..+......|+++.|+|+++.||
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 24678889999999999999999999654 344555666677899999999999998
Q ss_pred EecC--CCcEEEEEcCCCCEEEEEecC----CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 229 SASE--DLFIDISNVHTGRTVHQIPCR----AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 229 s~s~--d~~i~iw~~~~~~~~~~~~~~----~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
.+|. +..+++--+.+......++.. +.+++++|||.+.+||.|..+ |.+++|-+
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~--------grv~l~kL 511 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA--------GRVHLFKL 511 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC--------CceeeEee
Confidence 8884 567888888777766666543 357899999999999999876 45666654
No 92
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3.8e-26 Score=184.26 Aligned_cols=219 Identities=20% Similarity=0.377 Sum_probs=179.2
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
..+.|-.+.|+++.|.++++.+++++.|+.+++|+++... ..-.+.+|++.|+++.|.... ..+++|+.|.+|+.
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r----~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR----LRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKL 287 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh----hhhhhcccccceeeehhhccc-cceeeccccchhhh
Confidence 4456777899999999999999999999999999997532 123578999999999987543 34899999999999
Q ss_pred EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC---
Q 022716 94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN--- 170 (293)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--- 170 (293)
||+....|.........+..+..+ ...+++|..|++|+.||++...+......+..+.++..++.+..+...+.+
T Consensus 288 WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 288 WDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTL 365 (459)
T ss_pred hhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCce
Confidence 999998887765555554445544 456888889999999999999998888888888888877776554433322
Q ss_pred ----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC--CeeEEEEccCCCE
Q 022716 171 ----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW--PVRTISFSHTGDY 226 (293)
Q Consensus 171 ----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~~~ 226 (293)
...+.+.|+|++.|+++|+.||.|+||++.++++...+..... .|++++|+|.|.+
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 1245678999999999999999999999999988777765443 5999999999999
Q ss_pred EEEecCCCcEEEE
Q 022716 227 IASASEDLFIDIS 239 (293)
Q Consensus 227 l~s~s~d~~i~iw 239 (293)
|++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999999999999
No 93
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.3e-26 Score=172.94 Aligned_cols=209 Identities=24% Similarity=0.354 Sum_probs=164.2
Q ss_pred ccccceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 9 ~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
+..+++.++.|+.+|.++.|++.. ..++++|.|++||+|+..... ....+.+|+..|+...|+|..++++++++.
T Consensus 93 ~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 93 PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----SVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----ceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 334667789999999999999865 457888999999999976421 223588999999999999999999999999
Q ss_pred CCeEEEEeCCCCeeeeeeeecC-ceEEEEEcC-CCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEE
Q 022716 88 DKTVRLWDARSGKCSQQAELSG-ENINITYKP-DGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
|+.+++||++.......++.+. ++.+|.|++ +...|++|+.|+.|+.||+|+.+ |+.
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~-------------------- 228 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF-------------------- 228 (311)
T ss_pred CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccce--------------------
Confidence 9999999997654333355444 778999975 56688999999999999998754 222
Q ss_pred EEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEcc-CCCEEEEecCCCcEEEEEc
Q 022716 165 FLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSH-TGDYIASASEDLFIDISNV 241 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~ 241 (293)
.+..+.-.+-.+.++|-. ..||+++-|-+++|||.... ..+.+...|...+..+.||+ +..++|+++-|+.++||+.
T Consensus 229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 222334445566677754 67899999999999998744 34455666788899999997 4679999999999999984
No 94
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.9e-24 Score=186.10 Aligned_cols=262 Identities=20% Similarity=0.357 Sum_probs=213.1
Q ss_pred cccEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCC-----ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 20 KKKVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHG-----KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 20 ~~~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~-----~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
...|.++.|-|.++ .|++ -.++++..|.++..... ....+.+.||...|.+++++.+ ..+++| +..+.+
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~S-ga~~Si 396 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLAS-GAGESI 396 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeee-cCCCcE
Confidence 35788888888764 3444 67899999988752211 2234568899999999999864 344544 446789
Q ss_pred EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecC-
Q 022716 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG- 169 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~- 169 (293)
++|+..+.+|++++... ...+..|-|.++++++|+..|.+.++|+.+...+.++. +...++.++..|++..+...+.
T Consensus 397 kiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saD 475 (888)
T KOG0306|consen 397 KIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSAD 475 (888)
T ss_pred EEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCC
Confidence 99999999999887655 67788899999999999999999999998877665554 5566777777776654443322
Q ss_pred --------------------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716 170 --------------------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 217 (293)
Q Consensus 170 --------------------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 217 (293)
...+.|+.++||+++||++--|+++++|-+.+..-.-++.+|.-||.+
T Consensus 476 ktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~s 555 (888)
T KOG0306|consen 476 KTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLS 555 (888)
T ss_pred cEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeE
Confidence 135779999999999999999999999999988777788999999999
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCCEEEE-EecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE
Q 022716 218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF 285 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~ 285 (293)
+.+|||++.++|||.|..|++|.+.-|.+-+. +.|..+|.++.|-|+...|.++|.|+.+.+||..+|
T Consensus 556 mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 556 MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh
Confidence 99999999999999999999999998887665 456788999999999999999999999999988766
No 95
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.2e-25 Score=185.75 Aligned_cols=239 Identities=19% Similarity=0.289 Sum_probs=197.4
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
.+-|.++.+.|||+.|++|+.-.++-|||+.... ..+ ..++......+++++.+|+ .++.+++..||.|.|||+.+.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapT-pri-kaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRI-KAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCC-cch-hhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEcccc
Confidence 4568899999999999999999999999997532 111 1234333456788999997 578889999999999999998
Q ss_pred eeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 100 KCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
..++.++. .....++.+++||..|.+|+-|++++.||+|....+....|.. .|.++..
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~S---------------------QIfSLg~ 600 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSS---------------------QIFSLGY 600 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhh---------------------hheeccc
Confidence 88777764 4556789999999999999999999999999876555433322 3456777
Q ss_pred CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce
Q 022716 179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS 258 (293)
Q Consensus 179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~ 258 (293)
.|++.+|++|-+++.+.+-.....+ .+.+.-|+.-|.++.|++.|+++++-+.|+.+..|...-|..+.+.+..++|.+
T Consensus 601 cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVls 679 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS 679 (705)
T ss_pred CCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCccee
Confidence 8999999999999999999876554 346677899999999999999999999999999999988998988888889999
Q ss_pred eEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 259 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 259 ~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
+..|-+..+|++|+.|+ ...||.++
T Consensus 680 CDIS~ddkyIVTGSGdk--------kATVYeV~ 704 (705)
T KOG0639|consen 680 CDISFDDKYIVTGSGDK--------KATVYEVI 704 (705)
T ss_pred eeeccCceEEEecCCCc--------ceEEEEEe
Confidence 99999999999999886 34566654
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.2e-24 Score=169.65 Aligned_cols=207 Identities=21% Similarity=0.397 Sum_probs=168.6
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
..|.+++.+++|-+ ...+++|+.||.|+.+|+.... ...+..|..+|.++.+.+. ...+++||+|++|++||.
T Consensus 51 ~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-----~~~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~ 123 (323)
T KOG1036|consen 51 FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-----EDQIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDP 123 (323)
T ss_pred eecCCceeeeeccC-CceEEEeccCceEEEEEecCCc-----ceeeccCCCceEEEEeecc-CCeEEEcccCccEEEEec
Confidence 36889999999986 5579999999999999997532 2346689999999999875 467899999999999999
Q ss_pred CCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee---eeecccceeeeeEEecCCCEEEEecCCC--
Q 022716 97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HRRKFGYEVNEIAWNMTGEMFFLTTGNA-- 171 (293)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~-- 171 (293)
+.......+.....+.++... |..|++|+.+..+.+||+|+.... +...+...+++++.-|.++-+++.+-++
T Consensus 124 R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV 201 (323)
T KOG1036|consen 124 RNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV 201 (323)
T ss_pred cccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE
Confidence 876555555555566666554 679999999999999999986543 2445667788888888665555443221
Q ss_pred --------------------------------CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEE
Q 022716 172 --------------------------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 219 (293)
Q Consensus 172 --------------------------------~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~ 219 (293)
++.+++|+|-...||||+.||.|.+||+.+.+.+..+.+.+..|.+++
T Consensus 202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS 281 (323)
T ss_pred EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE
Confidence 366899999999999999999999999999988999988888899999
Q ss_pred EccCCCEEEEecC
Q 022716 220 FSHTGDYIASASE 232 (293)
Q Consensus 220 ~sp~~~~l~s~s~ 232 (293)
|+.+|..||+|+.
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999875
No 97
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8e-27 Score=199.83 Aligned_cols=237 Identities=22% Similarity=0.382 Sum_probs=199.7
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+++..|...|.|+..-..++.+++|+.|..+-+|.+.... ....+.+|..+|.++.|++. ..+|++|+.+|+|+
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----~i~S~~~hespIeSl~f~~~-E~LlaagsasgtiK 95 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----AITSLTGHESPIESLTFDTS-ERLLAAGSASGTIK 95 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----hhheeeccCCcceeeecCcc-hhhhcccccCCcee
Confidence 35677899999999988888999999999999999875321 12247899999999999876 57899999999999
Q ss_pred EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
+||+..++.++.+. +...+.++.|+|-+.+.+.|+.|..+++||++...+.+.++ ++..
T Consensus 96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~--------------------s~~~ 155 (825)
T KOG0267|consen 96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK--------------------SHTR 155 (825)
T ss_pred eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec--------------------CCcc
Confidence 99999887666554 34567789999999999999999999999998766554432 2333
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 251 (293)
.+-++.|+|+|+++++|++|.+++|||...++...+|..|+..+.++.|+|..-++++||.|+++++||+++...+....
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK 235 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999888776543
Q ss_pred -cCCCcceeEECCCCCeEEEEEcC
Q 022716 252 -CRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 252 -~~~~i~~~~~sp~~~~la~~~~d 274 (293)
....|.+++|+|++..+++|-..
T Consensus 236 ~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccCCceeeeecCCceeeecCchh
Confidence 35679999999999887777544
No 98
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.9e-25 Score=191.62 Aligned_cols=245 Identities=18% Similarity=0.321 Sum_probs=181.1
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC---cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH---ADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h---~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
++....+..+++-.+++.++. -.+++|.+.+..........+..- .-.+..|.|+.-..++|+|++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 356677888899999988874 677888877654333222222211 1235678887666789999999999999999
Q ss_pred CCC---eeeeee-eecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecc-cceeeeeEEecCCCEEEEecCC
Q 022716 97 RSG---KCSQQA-ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 97 ~~~---~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
... +.+..+ ++.-.+.++.|++. ..+|++|+.||+|++||+|.........- ...+++|+|+|.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~---------- 187 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPG---------- 187 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccC----------
Confidence 762 222223 23344567888764 46889999999999999998765443321 223444444322
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC--EE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR--TV 247 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~--~~ 247 (293)
.+.+++++.+.|.+++||+++. ++..++..|.++|.++.|+|++.+|||||.|++|+||+..+++ .+
T Consensus 188 ----------~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~ 257 (839)
T KOG0269|consen 188 ----------YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK 257 (839)
T ss_pred ----------CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce
Confidence 3678999999999999999864 4556788999999999999999999999999999999998664 46
Q ss_pred EEEecCCCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 248 HQIPCRAAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 248 ~~~~~~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
+.+....++.+|+|-|.. .+||++++= ++..++||++-
T Consensus 258 ~tInTiapv~rVkWRP~~~~hLAtcsmv------~dtsV~VWDvr 296 (839)
T KOG0269|consen 258 HTINTIAPVGRVKWRPARSYHLATCSMV------VDTSVHVWDVR 296 (839)
T ss_pred eEEeecceeeeeeeccCccchhhhhhcc------ccceEEEEeec
Confidence 677888899999999977 568888853 56788999873
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.3e-24 Score=177.44 Aligned_cols=209 Identities=24% Similarity=0.450 Sum_probs=166.5
Q ss_pred eecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCC---ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 15 EYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
.+.||.+.-.+|+|++... .|++|+.|++|++||+...... ......+.+|.+.|..++|++...++|.+++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 5779999899999998764 6899999999999999754331 22334578999999999999998899999999999
Q ss_pred EEEEeCCC--Ceeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 91 VRLWDARS--GKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 91 i~vwd~~~--~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
+.|||+++ .++..... +.+.+.+++|.| ++..||+|+.|++|.|||+|+.+. .+..+
T Consensus 252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------------------~lh~~ 312 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------------------PLHTF 312 (422)
T ss_pred EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------Cceec
Confidence 99999995 33333333 456678999998 456788899999999999998542 12234
Q ss_pred ecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCC--------------EEEEEeeccCCCeeEEEEccCCCE-EEEe
Q 022716 167 TTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM--------------LCVRTFTKLEWPVRTISFSHTGDY-IASA 230 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~--------------~~~~~~~~~~~~v~~l~~sp~~~~-l~s~ 230 (293)
..+...+.++.|+|.. ..||+++.|+.+.+||+..- +.+....+|...|...+|+|+..+ ++|+
T Consensus 313 e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv 392 (422)
T KOG0264|consen 313 EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV 392 (422)
T ss_pred cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe
Confidence 4566677788888874 67899999999999998542 234455689999999999999876 6888
Q ss_pred cCCCcEEEEEcC
Q 022716 231 SEDLFIDISNVH 242 (293)
Q Consensus 231 s~d~~i~iw~~~ 242 (293)
++|+.+.||...
T Consensus 393 aeDN~LqIW~~s 404 (422)
T KOG0264|consen 393 AEDNILQIWQMA 404 (422)
T ss_pred cCCceEEEeecc
Confidence 999999999875
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=185.07 Aligned_cols=239 Identities=17% Similarity=0.278 Sum_probs=189.4
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCC-CCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH-GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~-~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
.+|+...+.++|.|+|.+|.+++.||.|++|+.... ..+.. +. .+...|.+++-. ...|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t--i~--~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET--ID--ISGELVSSIACY---SNHFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch--hh--ccCceeEEEeec---ccceEEeeccceEEEee
Confidence 378999999999999999999999999999987543 22221 11 156677777643 34788999999999999
Q ss_pred CCCCeeeee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 96 ARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
+.+++.... ..+.-+...++++-+|++++.|+.|-.|++.++.+.... ..+..+.+++.
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------------------~~lrgh~apVl 142 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------------------KVLRGHDAPVL 142 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh--------------------eeecccCCcee
Confidence 988765422 234556678899999999999999999999987653322 23446778899
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--------CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--------EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--------~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
++.++|.+.+||+.+-||.|++||+.++.+.+++.+. ...+..++|+|+|..++..+.|+.|++++......
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 9999999999999999999999999998777666542 23466789999999999999999999999998877
Q ss_pred EEEEe---cCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 247 VHQIP---CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 247 ~~~~~---~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
...+. ....+..+.|+|.|.|||+++.|+.+-+|+-
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 66553 2334889999999999999999975555443
No 101
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=4.9e-24 Score=182.08 Aligned_cols=267 Identities=23% Similarity=0.377 Sum_probs=198.8
Q ss_pred cceeecCccccEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCCc----------------ee---EE--------E
Q 022716 12 HSREYTGHKKKVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGK----------------VK---DI--------E 61 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~~----------------~~---~~--------~ 61 (293)
...++.||.+.|++++|...+. +|||+|+|..||||.+....... .. .+ -
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 3466889999999999987654 78999999999999875332000 00 00 1
Q ss_pred eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC--eeeeeee---ec---CceEEEEEcCCCCEEEEEeCCCeEE
Q 022716 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG--KCSQQAE---LS---GENINITYKPDGTHIAVGNRDDELT 133 (293)
Q Consensus 62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~---~~---~~~~~~~~~~~~~~l~~~~~d~~i~ 133 (293)
+.||.+-|+++.|+|.+ ..|+|++.|.++.+|..... -.+.... .. +....+.|+|++..+++-+..|..+
T Consensus 263 l~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45999999999999975 45779999999999986544 2222222 11 2356788999999999999999999
Q ss_pred EEEccccce-eeee---cccceeeeeEEecCCCEEEEecCC---------------------------------------
Q 022716 134 ILDVRKFKP-IHRR---KFGYEVNEIAWNMTGEMFFLTTGN--------------------------------------- 170 (293)
Q Consensus 134 l~d~~~~~~-~~~~---~~~~~~~~v~~~~~~~~~~~~~~~--------------------------------------- 170 (293)
+|-.++... ..+. .+-..++++.|+|.|+.++..+.+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 998433221 1111 123467888888888754422210
Q ss_pred --------------------------------------------------------------------------------
Q 022716 171 -------------------------------------------------------------------------------- 170 (293)
Q Consensus 171 -------------------------------------------------------------------------------- 170 (293)
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence
Q ss_pred ------------------------CCEEEEEECCCCCEEEEecCCC-----cEEEEeCCCCEEEEEeeccCCCeeEEEEc
Q 022716 171 ------------------------AGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRTFTKLEWPVRTISFS 221 (293)
Q Consensus 171 ------------------------~~~~~~~~~~~~~~l~~gs~d~-----~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 221 (293)
-.+++++.+|+++++|++.... .|++|+..+....+.+.+|.-.|+.++||
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 0267999999999999987654 58999999988888899999999999999
Q ss_pred cCCCEEEEecCCCcEEEEEcCCCCEE-E----EEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 222 HTGDYIASASEDLFIDISNVHTGRTV-H----QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 222 p~~~~l~s~s~d~~i~iw~~~~~~~~-~----~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
|||++|++.|.|.++.+|........ . ...|..-|.+++|+|++.+||++|.|+.+..
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence 99999999999999999998654321 1 1234445789999999999999999974333
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.3e-24 Score=174.61 Aligned_cols=248 Identities=19% Similarity=0.279 Sum_probs=195.7
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-----c-------eeEEEe--eCCcCCeeEEEEcCCC
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----K-------VKDIEL--RGHADSVDQLCWDPKH 78 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-----~-------~~~~~~--~~h~~~i~~~~~~~~~ 78 (293)
.+.+..|.-+|.|++++|++++..+++.||+|.=|++...... . ....+. .+|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D- 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD- 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence 4667789999999999999999999999999999998653211 0 000112 378899999999987
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
+.+|++|+.|..|.||+.++.+.+..+. +.+.+.+++|-.....+++++.|..+++|++.....+..
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet------------ 281 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET------------ 281 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH------------
Confidence 5799999999999999999988777754 557788899988778999999999999999876443221
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFID 237 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~ 237 (293)
+-.|++.+..|....-.+.+.+|+.|+++++|++..-.+ ..+.++...+.+++|- +...+++||+||.|.
T Consensus 282 --------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~I-n~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 --------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIA 351 (479)
T ss_pred --------HhCCccceeeechhcccceEEeccccceeEEEeccccce-eeeeCCCCCeeeEEEe-cccceeeccCCceEE
Confidence 123556667777777788888899999999999954333 3577888899999995 456789999999999
Q ss_pred EEEcCCCCEEEEEe--cC-----------CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 238 ISNVHTGRTVHQIP--CR-----------AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 238 iw~~~~~~~~~~~~--~~-----------~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
+|++.+.+.+.... +. ..|++|+-.|..+++|+|+.+ |-+|+|.+|
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~--------G~vrLW~i~ 410 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS--------GCVRLWKIE 410 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC--------CceEEEEec
Confidence 99998887765432 11 157889999999999999987 566777765
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=171.01 Aligned_cols=244 Identities=23% Similarity=0.329 Sum_probs=192.6
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..++|.||+..|..++-....+.+.+++.|.+.+||.+++. .....+.||.+.|+++.|++. +.++++++.|++.
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg----~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG----ACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc----cceeeecccccceeeEEeccc-cceEEEccCCcch
Confidence 45788999999999998888888999999999999999864 234567899999999999986 5799999999999
Q ss_pred EEEe------CCCC--------e----------------------e--eeeeee---cCceEEEEEcCCCCEEEEEeCCC
Q 022716 92 RLWD------ARSG--------K----------------------C--SQQAEL---SGENINITYKPDGTHIAVGNRDD 130 (293)
Q Consensus 92 ~vwd------~~~~--------~----------------------~--~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~ 130 (293)
.||. +... + . ...+.+ .+.+.++.|-..|+++++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 9995 1110 0 0 000111 12244566778899999999999
Q ss_pred eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEee
Q 022716 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFT 209 (293)
Q Consensus 131 ~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~ 209 (293)
+-.+||+++..+++. ++.++...+-++-+|..+++++.+.|-+.++||.+.. ..+..|.
T Consensus 295 TAnlwDVEtge~v~~--------------------LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 295 TANLWDVETGEVVNI--------------------LTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred cceeeeeccCceecc--------------------ccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence 999999998876653 2334445556677899999999999999999998743 3466789
Q ss_pred ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC-CEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 210 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 210 ~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
+|...|+++.|+.+. .+++||+|.+|++||++.- ..+-.+...++++.++.+.-+.+||.--+++.++++|
T Consensus 355 GHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred ccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999998765 5889999999999999764 4566777888999999999888999987765443333
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.8e-24 Score=183.57 Aligned_cols=241 Identities=20% Similarity=0.279 Sum_probs=190.9
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
...+..|.+.|..+....+|+.|+++|.|-+|++|+.......+ ...+..|.+.|.++++-..+..+++|||-|+.|.
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c--~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC--MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh--HhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence 45567899999999999999999999999999999987543112 2246789999999999444567999999999999
Q ss_pred EEeCCCCee--eeeee----------ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716 93 LWDARSGKC--SQQAE----------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 93 vwd~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
+||+.++.. ...++ ....+++++..+.|..++.|+..+-+++||.++.+.+..
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk--------------- 208 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK--------------- 208 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee---------------
Confidence 999997732 21111 123466788889999999999999999999988654322
Q ss_pred CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
+..|...+-++-++++|+.++++++||+|++||+...+++.++..|...|.++.-+|+=.++.+|+.|+.|+.-|
T Consensus 209 -----LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 209 -----LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred -----eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence 224555677888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-EEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 241 VHTGR-TVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 241 ~~~~~-~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
+.+.. ....+....+|..+..+-+.+.+=++..|.
T Consensus 284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDS 319 (735)
T ss_pred cCCchhheEeecCCCchhhhhhccccCCceeeeccc
Confidence 98853 334445556777777775554433444443
No 105
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.8e-24 Score=173.63 Aligned_cols=231 Identities=23% Similarity=0.424 Sum_probs=173.5
Q ss_pred CCCeEEEEeCCCcEEEeecCCCCCC--ce---------------eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 31 TGTKLASGSVDQTARVWHIEPHGHG--KV---------------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 31 ~~~~l~s~~~dg~v~iw~~~~~~~~--~~---------------~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
.|+++|.|..|-.|.|||++-...- .. ....-.+|++.|.+++|+....++|+|||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3689999999999999998742210 00 001123688899999999888889999999999999
Q ss_pred EeCCCCeeeeeeee-cCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 94 WDARSGKCSQQAEL-SGENINITYKPD-GTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 94 wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
||+.++++...+.. ...+.++.|+|. ...|++|+.|+++.+.|.|... .-...++..++..+.|++..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~s--------- 341 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHS--------- 341 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCC---------
Confidence 99999999988874 556778999874 5689999999999999998522 22333444555555554332
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCC--E
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGR--T 246 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~--~ 246 (293)
-..+++++.||+|+-+|+++. .++.+++.|..+|.+|++++.- .+|+|+|.|+.+++|++..-. .
T Consensus 342 -----------e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 342 -----------ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred -----------ceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc
Confidence 235677889999999999875 8888999999999999999875 468999999999999986533 2
Q ss_pred E--EEEecCCCcceeEECCCCC-eEEEEEcCCCCCCCCcceEEEEee
Q 022716 247 V--HQIPCRAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 247 ~--~~~~~~~~i~~~~~sp~~~-~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
+ +.+.. +...|.++.|+-. .||+||.. +++|||++
T Consensus 411 v~~~~~~~-~rl~c~~~~~~~a~~la~GG~k--------~~~~vwd~ 448 (463)
T KOG0270|consen 411 VKEHSFKL-GRLHCFALDPDVAFTLAFGGEK--------AVLRVWDI 448 (463)
T ss_pred cccccccc-cceeecccCCCcceEEEecCcc--------ceEEEeec
Confidence 2 22222 2256777888775 57777754 57788875
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=2.5e-23 Score=159.54 Aligned_cols=209 Identities=18% Similarity=0.282 Sum_probs=172.1
Q ss_pred EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVR 138 (293)
Q Consensus 60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~ 138 (293)
+.++||+.+++.+.++.+ +++|+||+.|..+.+|-..+|+.+..+. +.+.+.++....+.+.+++|+.|.+++|||.+
T Consensus 4 i~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 457899999999999976 5899999999999999998998888876 45678899999999999999999999999999
Q ss_pred ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-------CCEEEEEeecc
Q 022716 139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-------EMLCVRTFTKL 211 (293)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-------~~~~~~~~~~~ 211 (293)
+++.+...+.+..++.+.|++.+.+..+...... +..+.|.++|++ ..++...+..+
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~m----------------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQM----------------GYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhc----------------CcceEEEEEEccCChhhhcccCceEEecCC
Confidence 9999988888888877777666555443332110 123568889887 34556667777
Q ss_pred CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE--ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE
Q 022716 212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF 285 (293)
Q Consensus 212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~--~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~ 285 (293)
+..++..-|.|-+++|++|.+||.|.+||..+|+++..- .+...|+++.++|+..++++++.|.+..++|...+
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence 889999999999999999999999999999998765432 34558999999999999999999998888777554
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4e-24 Score=167.78 Aligned_cols=247 Identities=20% Similarity=0.318 Sum_probs=189.7
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecC------CCC------------------------------C
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIE------PHG------------------------------H 54 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~------~~~------------------------------~ 54 (293)
.+...|.||.+.|.++.|++.+.+++||+.|++..||... .+. .
T Consensus 181 ~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 4567899999999999999999999999999999999721 100 0
Q ss_pred CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCce-EEEEEcCCCCEEEEEeCCCeEE
Q 022716 55 GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELT 133 (293)
Q Consensus 55 ~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~ 133 (293)
-+.....+.+|...|.+..|.. +++.++++++|.+..+||+.++..+..+..+... ..+..+|..+++++.+.|.+++
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence 0122345789999999999975 4678999999999999999999988877655443 4577789999999999999999
Q ss_pred EEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC
Q 022716 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW 213 (293)
Q Consensus 134 l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~ 213 (293)
+||.+..- ..+ ..+..+...++++.|..+. .+++|++|.+|++||+++++..--....+.
T Consensus 340 LWDFReaI-----------~sV--------~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 340 LWDFREAI-----------QSV--------AVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred eccchhhc-----------cee--------eeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCC
Confidence 99987421 111 1234556677888887655 579999999999999998865433345677
Q ss_pred CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE-----EEecCCCcceeEECCCC--CeEEEEEcCCCCC
Q 022716 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH-----QIPCRAAMNSVEWNPKY--NLLAYAGDDKNKY 278 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~-----~~~~~~~i~~~~~sp~~--~~la~~~~d~~~~ 278 (293)
+++-++.+..+..+|.--++..|+++|+...+..+ .-.++..|.+++|..+- .-|.++|-|+-..
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 99999999888899998999999999997654321 12356679999996443 4577888886433
No 108
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.7e-25 Score=188.40 Aligned_cols=237 Identities=20% Similarity=0.334 Sum_probs=179.3
Q ss_pred EEEEEEC-CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716 23 VHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (293)
Q Consensus 23 v~~l~~s-~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 101 (293)
+..+.|+ -+.++|||++..|.|-+||+..... ......+..|+..++.+.|++....+|+|||.||+|++||++..+-
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcccc-chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4455565 2467899999999999999974211 1122346789999999999999899999999999999999987765
Q ss_pred eeeeee-cCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716 102 SQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID 179 (293)
Q Consensus 102 ~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
...+.. ...+..+.|+| .+.+++++...|.+.+||+|...... ..+..|.+++.|+.++
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-------------------~k~~AH~GpV~c~nwh 229 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-------------------KKLTAHNGPVLCLNWH 229 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-------------------HHhhcccCceEEEeec
Confidence 554433 33456789987 56789999999999999998643211 2245788899999999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCCCE-EEEec--CCCcEEEEEcCCCCEE-EEEe-cC
Q 022716 180 PMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDY-IASAS--EDLFIDISNVHTGRTV-HQIP-CR 253 (293)
Q Consensus 180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~-l~s~s--~d~~i~iw~~~~~~~~-~~~~-~~ 253 (293)
|++.+||+|+.|+.|+|||+...+.-.... ....+|..|.|=|..++ ||+++ .|..|+|||+...... ..+. ++
T Consensus 230 Pnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 230 PNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred CCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 999999999999999999987543322222 23468999999998764 78887 4788999999876654 3443 45
Q ss_pred CCcceeEECC-CCCeEEEEEcCCCCCC
Q 022716 254 AAMNSVEWNP-KYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 254 ~~i~~~~~sp-~~~~la~~~~d~~~~~ 279 (293)
..++.++|-. +-..+-+++.|+.+.+
T Consensus 310 ~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 310 DSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ccccceeccCCCceeeEeecCccHHHH
Confidence 5678899954 4567888888876654
No 109
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=164.77 Aligned_cols=246 Identities=17% Similarity=0.329 Sum_probs=180.8
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 102 (293)
..|+.||+-|.+||.|..||.|.|||+.... ....+.+|..+|.+++|++++ .+|+|++.|..|.+||+..|.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR----IARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc----hhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999998643 223477999999999999975 67889999999999999999999
Q ss_pred eeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC
Q 022716 103 QQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM 181 (293)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (293)
+.+.+.+++..+.|+|.....++.+ -+..-.+.++.. +.+.. +.-+.++.+-.. ..+..|++-
T Consensus 101 ~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~--------Lp~d~d~dln~s------as~~~fdr~ 164 (405)
T KOG1273|consen 101 KRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSV--------LPKDDDGDLNSS------ASHGVFDRR 164 (405)
T ss_pred eEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--Cceee--------ccCCCccccccc------cccccccCC
Confidence 9999999999999998654433332 122223333222 11110 001111111111 113368899
Q ss_pred CCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEecCCCcEEEEEcCCC----C--EE---EEEe
Q 022716 182 GRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDLFIDISNVHTG----R--TV---HQIP 251 (293)
Q Consensus 182 ~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~----~--~~---~~~~ 251 (293)
|+++.+|+..|.+.++|..+.+++..++... ..|..+.|+..|+.|+..+.|..|+.|+...- + .+ ++++
T Consensus 165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q 244 (405)
T KOG1273|consen 165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ 244 (405)
T ss_pred CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence 9999999999999999999999998887766 78999999999999999999999999998631 1 11 2221
Q ss_pred ---cCCCcceeEECCCCCeEEEEEcC-CCCCCCCc--ceE-EEEe
Q 022716 252 ---CRAAMNSVEWNPKYNLLAYAGDD-KNKYQADE--GVF-RIYG 289 (293)
Q Consensus 252 ---~~~~i~~~~~sp~~~~la~~~~d-~~~~~~~~--~~~-~~~~ 289 (293)
.+..=+++.||.+|.|++.++.. -.+|||+. |.+ ||++
T Consensus 245 DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 245 DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence 12223578899999998888743 36777776 333 6654
No 110
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.7e-23 Score=186.89 Aligned_cols=250 Identities=21% Similarity=0.337 Sum_probs=189.3
Q ss_pred ecCcc-ccEEEEEECCCCCeEEEEe--CCCcEEEeecCCCC-------C-CceeEEEeeCCcCCeeEEEEcCCCCCEEEE
Q 022716 16 YTGHK-KKVHSVAWNCTGTKLASGS--VDQTARVWHIEPHG-------H-GKVKDIELRGHADSVDQLCWDPKHADLIAT 84 (293)
Q Consensus 16 ~~~h~-~~v~~l~~s~~~~~l~s~~--~dg~v~iw~~~~~~-------~-~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s 84 (293)
+-+|. ..|-++..+|||..++||+ .|+.++||+.++-. . -.........|.+.|+++.|+|+ +.+|++
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD-GSYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC-CCeEee
Confidence 33454 5799999999999999999 89999999875311 0 01112345579999999999997 479999
Q ss_pred EeCCCeEEEEeCCC----Ce--------------eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee
Q 022716 85 ASGDKTVRLWDARS----GK--------------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR 145 (293)
Q Consensus 85 ~~~d~~i~vwd~~~----~~--------------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~ 145 (293)
|+.|+.|.||.... .. +...+. +.+.+..+.|+|++.+|++++.|++|.+|+.+++..+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 99999999998662 00 112222 345567899999999999999999999999999865443
Q ss_pred ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC------CCeeEEE
Q 022716 146 RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE------WPVRTIS 219 (293)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~------~~v~~l~ 219 (293)
. ..|.+.+.-+.|+|.|+|+|+-+.|++|++|++.++...+.+.++- .-..-+.
T Consensus 167 l--------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 167 L--------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred e--------------------ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 2 3445556667889999999999999999999988877777766543 2467799
Q ss_pred EccCCCEEEEec----CCCcEEEEEcCCCCE-EEEEecCCCcceeEECCC-----CC------------eEEEEEcCCCC
Q 022716 220 FSHTGDYIASAS----EDLFIDISNVHTGRT-VHQIPCRAAMNSVEWNPK-----YN------------LLAYAGDDKNK 277 (293)
Q Consensus 220 ~sp~~~~l~s~s----~d~~i~iw~~~~~~~-~~~~~~~~~i~~~~~sp~-----~~------------~la~~~~d~~~ 277 (293)
|||||++|++.. .-.++.|.+-.+.+. +..+.|+.++..+.|+|. .+ .+|+||.|+.+
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl 306 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL 306 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence 999999999874 234577877766553 445578889999999974 11 68999999988
Q ss_pred CCCCcceEE
Q 022716 278 YQADEGVFR 286 (293)
Q Consensus 278 ~~~~~~~~~ 286 (293)
-+|..+-.|
T Consensus 307 SVW~T~~~R 315 (942)
T KOG0973|consen 307 SVWNTALPR 315 (942)
T ss_pred EEEecCCCC
Confidence 777665443
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.1e-23 Score=162.48 Aligned_cols=209 Identities=20% Similarity=0.338 Sum_probs=162.8
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeEEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVRLW 94 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i~vw 94 (293)
...|.++|.+++|+.||..+++|+.|+.+++||+.++ + ...+..|.++|..+.|-+.. ..+|+|||+|++++.|
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC---C--eeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence 3468899999999999999999999999999999864 2 23467899999999996542 3589999999999999
Q ss_pred eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceee---eecccceeeeeEEecCCC---------
Q 022716 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---RRKFGYEVNEIAWNMTGE--------- 162 (293)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~---~~~~~~~~~~v~~~~~~~--------- 162 (293)
|.+....+..+++.+.+.++.... ..++++..++.|.++++++..... ...+...+++|+-..+.+
T Consensus 143 D~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 143 DTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred ccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 999999999999999888876543 377888889999999996543211 112233344443332222
Q ss_pred --------------EEEEecCC------C---CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEE
Q 022716 163 --------------MFFLTTGN------A---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 219 (293)
Q Consensus 163 --------------~~~~~~~~------~---~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~ 219 (293)
.+.+-+|. + .+.+|+|+|.-..|++++.||+..+||-....++++.+.|..+|++.+
T Consensus 221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS 300 (347)
T ss_pred eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeE
Confidence 22233332 1 245689999999999999999999999887777888888999999999
Q ss_pred EccCCCEEEEec
Q 022716 220 FSHTGDYIASAS 231 (293)
Q Consensus 220 ~sp~~~~l~s~s 231 (293)
|+.+|.++|-+.
T Consensus 301 fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 301 FNRNGSIFAYAL 312 (347)
T ss_pred ecCCCCEEEEEe
Confidence 999999987764
No 112
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=2.4e-23 Score=161.80 Aligned_cols=209 Identities=24% Similarity=0.413 Sum_probs=164.5
Q ss_pred cCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCc----e-eEE------EeeCCcCCeeEEEEcCCCCCEEEE
Q 022716 17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK----V-KDI------ELRGHADSVDQLCWDPKHADLIAT 84 (293)
Q Consensus 17 ~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~----~-~~~------~~~~h~~~i~~~~~~~~~~~~l~s 84 (293)
.-|.+.|.+|...+ .|+++++|+.||.|-+||++.-..-+ + ... ...+|+-.|..+.|-|-+...+.|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 36889999999987 57899999999999999997432100 0 001 123577789999999988889999
Q ss_pred EeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC---CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716 85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG---THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (293)
++.|.+++|||..+-+....+..++.+.+-+++|-. -++++|..|-.|++.|+.++...+.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~---------------- 183 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT---------------- 183 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee----------------
Confidence 999999999999998888888888988888887743 4788888999999999988665443
Q ss_pred CEEEEecCCCCEEEEEECCCCCE-EEEecCCCcEEEEeCCCC-EEEEE--------------eeccCCCeeEEEEccCCC
Q 022716 162 EMFFLTTGNAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRT--------------FTKLEWPVRTISFSHTGD 225 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~-l~~gs~d~~i~iwd~~~~-~~~~~--------------~~~~~~~v~~l~~sp~~~ 225 (293)
+..+...+.++.|+|...+ |++|+.||.|++||++.- -+... -..|...|+.++|+.++.
T Consensus 184 ----LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 184 ----LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ----eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 3345566677777777655 789999999999999753 22222 234667899999999999
Q ss_pred EEEEecCCCcEEEEEcCCCC
Q 022716 226 YIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~~~ 245 (293)
++++++.|..+++|+...|+
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred hhhhccCccceEEeecccCc
Confidence 99999999999999988764
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.9e-24 Score=172.79 Aligned_cols=221 Identities=15% Similarity=0.199 Sum_probs=173.3
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
-.++|+|++-+|+|.+|+.|.-.|.+.+|.+.+. . ....+.+|-..|+++.|+.+ +..|+|||.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---~-LL~v~~aHYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---I-LLNVLSAHYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccc---c-HHHHHHhhccceeEEEEeCC-CcEEEecCCCccEEEEEEEe
Confidence 3578999999999999999989999999999753 2 22346789999999999876 56899999999999997521
Q ss_pred -------C--eeeeeeeecC-ceEEEEE--cCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 99 -------G--KCSQQAELSG-ENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 99 -------~--~~~~~~~~~~-~~~~~~~--~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
. .....+..+. +++.+.. .+....+++.+.|.++++||+.....+....+
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f------------------ 216 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF------------------ 216 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec------------------
Confidence 1 1222232222 2334444 34457899999999999999987665554433
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC----------------CEEEEEeeccCC--CeeEEEEccCCCEEE
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----------------MLCVRTFTKLEW--PVRTISFSHTGDYIA 228 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~----------------~~~~~~~~~~~~--~v~~l~~sp~~~~l~ 228 (293)
...+.+++++|.++.+-+|+++|.|.+.++.+ +..++.+.+|.+ +|++++++-||..|+
T Consensus 217 ---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 217 ---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 33456788899999999999999998887632 234556778887 999999999999999
Q ss_pred EecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCC
Q 022716 229 SASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY 265 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~ 265 (293)
+|+.||.+.|||+.+.+.++.+. .+++|+.+.+.|-.
T Consensus 294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 99999999999999999898887 78899999997743
No 114
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=180.32 Aligned_cols=277 Identities=16% Similarity=0.195 Sum_probs=193.4
Q ss_pred cccccccc-----eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCC
Q 022716 6 IPFKNLHS-----REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80 (293)
Q Consensus 6 ~~~~~~~~-----~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~ 80 (293)
+-||++.. .....|.+.|..+.|-|....++|++.|+.+++|-.++............||..+-.++.|....+.
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 44555543 4456898999999999999999999999999999777543222222234588888888888766667
Q ss_pred EEEEEeCCCeEEEEeCCCC-------------------------------------------------------------
Q 022716 81 LIATASGDKTVRLWDARSG------------------------------------------------------------- 99 (293)
Q Consensus 81 ~l~s~~~d~~i~vwd~~~~------------------------------------------------------------- 99 (293)
.+.+++.|++.+.+++...
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence 7888888887766653211
Q ss_pred ----ee-eeeeee------cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee----cccceeeeeEEecCCCEE
Q 022716 100 ----KC-SQQAEL------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 100 ----~~-~~~~~~------~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~----~~~~~~~~v~~~~~~~~~ 164 (293)
.. ...+.. ...+.+++.++-|+..+.|++.|.|.++++.++...... -+..++..++-+..++.+
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL 508 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence 00 000000 012345677888899999999999999999876544433 123344444433322222
Q ss_pred EEecCC--------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716 165 FLTTGN--------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224 (293)
Q Consensus 165 ~~~~~~--------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 224 (293)
..++.+ ..+.++..+.....++.+..|-.|+++|..+.+.++.|.+|.+.|++++|||||
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG 588 (910)
T ss_pred EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence 211111 123344444445555555555566666655555566778899999999999999
Q ss_pred CEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC-CCCCCCCc
Q 022716 225 DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD-KNKYQADE 282 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d-~~~~~~~~ 282 (293)
++|++++.|++|++||+.++.++..+....+..++.|||+|.+||++.-| ..+|+|.+
T Consensus 589 rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 99999999999999999999999988888999999999999999999998 45666655
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1e-21 Score=163.55 Aligned_cols=244 Identities=14% Similarity=0.171 Sum_probs=177.0
Q ss_pred ceeecCccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
.+.+.+|. .+.+++|+|+|+.+ ++++.|+.|++||+.... .. ..+..+.. +..+.++|++..++++++.++.+
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~-~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VI-GTLPSGPD-PELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EE-EeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence 34455444 46789999999876 677889999999987431 11 12333333 45678898865455566678999
Q ss_pred EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC-eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC-
Q 022716 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG- 169 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 169 (293)
++||+.+.+.+..+.....+..++++|+|+.++++..++ .+.+||.++.........+.....+.|++.+..+++...
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred EEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCC
Confidence 999999877766665555567899999999999988765 567789887665544434444566778877776554332
Q ss_pred CC----------------------------CEEEEEECCCCCEEEE-ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716 170 NA----------------------------GCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTFTKLEWPVRTISF 220 (293)
Q Consensus 170 ~~----------------------------~~~~~~~~~~~~~l~~-gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 220 (293)
.. ....++++|+++++++ ...++.+.+||.++++....+. +...+.+++|
T Consensus 178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 256 (300)
T TIGR03866 178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF 256 (300)
T ss_pred CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE
Confidence 10 0124678999988544 4557789999999887765543 3457899999
Q ss_pred ccCCCEEEEe-cCCCcEEEEEcCCCCEEEEEecCCCcceeEECC
Q 022716 221 SHTGDYIASA-SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 263 (293)
Q Consensus 221 sp~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp 263 (293)
+|+|++|+++ +.++.|.+||..+++.+..++.....+.|+++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 9999999876 568999999999999988888777778888876
No 116
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=8.6e-25 Score=171.97 Aligned_cols=221 Identities=22% Similarity=0.282 Sum_probs=179.7
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
|+-|..+|.|+.||.|...||+|+.||.|++|.+....+ ....-++|...|+++.|+.++ ..++|++.|.++++--
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~C---lRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQC---LRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHG 334 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchH---HHHhhhhhccCeeEEEEccCc-chhhcccccceEEEec
Confidence 556789999999999999999999999999999975421 111234899999999999875 4677999999999999
Q ss_pred CCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc---cceeeeeEEecCCCEEEEecC--
Q 022716 96 ARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTTG-- 169 (293)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~-- 169 (293)
+++|+++..+..+.. +....|++||..++++++||++++|+.++..++...+. +..++.+-.-|..+.-++.++
T Consensus 335 lKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 335 LKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred cccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence 999999888775544 55688999999999999999999999988776665543 234555444343322111111
Q ss_pred ----------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE
Q 022716 170 ----------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 227 (293)
Q Consensus 170 ----------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 227 (293)
.+...+..++|.|.++-+.+.|+.++.|.+.++...+++.-|+..|-.++-+|-.+.+
T Consensus 415 ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNll 494 (508)
T KOG0275|consen 415 NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLL 494 (508)
T ss_pred CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchh
Confidence 1345677889999999999999999999999999888999999999999999999999
Q ss_pred EEecCCCcEEEEE
Q 022716 228 ASASEDLFIDISN 240 (293)
Q Consensus 228 ~s~s~d~~i~iw~ 240 (293)
|+=++||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999995
No 117
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=5.5e-23 Score=164.49 Aligned_cols=240 Identities=20% Similarity=0.292 Sum_probs=173.4
Q ss_pred CccccEEEEEECCCCC--eEEEEeCCCcEEEeecCCCC------------CCceeEEEeeCCcCCeeEEEEcCCCCCEEE
Q 022716 18 GHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHG------------HGKVKDIELRGHADSVDQLCWDPKHADLIA 83 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~--~l~s~~~dg~v~iw~~~~~~------------~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~ 83 (293)
+|.+.+..+.-++-++ ..++=+..|.|+||++.+.- .......++.+|...-+.++|+|.....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 6777777777776654 44555668999999986421 011123457789988999999996555688
Q ss_pred EEeCCCeEEEEeCCCCeeee----eeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716 84 TASGDKTVRLWDARSGKCSQ----QAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 84 s~~~d~~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~ 158 (293)
||.+-+.|++|...++.... ...+...+-.++|+|.. ..+++|+.|+.|+|||+|.....
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--------------- 293 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--------------- 293 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc---------------
Confidence 99999999999987775322 12233445568999964 57889999999999999975211
Q ss_pred cCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC---CEEEEEeeccCCCeeEEEEccC-CCEEEEecCCC
Q 022716 159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---MLCVRTFTKLEWPVRTISFSHT-GDYIASASEDL 234 (293)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~---~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~d~ 234 (293)
.-+....+++.+..|.|+..-.+||+|+.||+++|||+++ +.++.+|+.|..+|++|.|+|. ...++.++.|.
T Consensus 294 ---~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 294 ---AAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred ---ceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 1112234445556666667777999999999999999976 4567789999999999999986 46788999999
Q ss_pred cEEEEEcCCCC-------------------EEEEEecCCCcceeEECCCC-CeEEEEEcCC
Q 022716 235 FIDISNVHTGR-------------------TVHQIPCRAAMNSVEWNPKY-NLLAYAGDDK 275 (293)
Q Consensus 235 ~i~iw~~~~~~-------------------~~~~~~~~~~i~~~~~sp~~-~~la~~~~d~ 275 (293)
.|.|||+.... ++..-+....+..+.|++.. .++++++.|+
T Consensus 371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 99999985321 11111234568899999976 4677777775
No 118
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=1.2e-23 Score=164.52 Aligned_cols=210 Identities=20% Similarity=0.317 Sum_probs=165.9
Q ss_pred EEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC------C------Cee------ee-eeeecCceEEEEEcCC
Q 022716 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR------S------GKC------SQ-QAELSGENINITYKPD 119 (293)
Q Consensus 59 ~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~------~------~~~------~~-~~~~~~~~~~~~~~~~ 119 (293)
...+..|+.++.+.+|+|++ .+++||+.|-.|++.|+. . +.. ++ .+.+-..+..+.|+|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred eEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 44577899999999999975 699999999999999975 1 100 01 1122345567999999
Q ss_pred CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716 120 GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI 199 (293)
Q Consensus 120 ~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~ 199 (293)
...|++|+.|++++++|..+....+..+. .....++-++.|+|.|.+|++|+.-.++++||+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv 245 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKV------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDV 245 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHH------------------hhccceeeeEeecCCCceEEEecCCCceeEEec
Confidence 99999999999999999865432222111 112234668999999999999999999999999
Q ss_pred CCCEEEEEe---eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe---cCCCcceeEECCCCCeEEEEEc
Q 022716 200 SEMLCVRTF---TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP---CRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 200 ~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~---~~~~i~~~~~sp~~~~la~~~~ 273 (293)
.+..+.-.- .+|...|+++.+|+.|+.-+|||.||.|+|||.-+.+++..+. ....|.+..|..+++++.+.|+
T Consensus 246 ~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 246 NTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred cceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 988766443 3577899999999999999999999999999999988887653 3457999999999999999999
Q ss_pred CCCCCCCCcceEEE
Q 022716 274 DKNKYQADEGVFRI 287 (293)
Q Consensus 274 d~~~~~~~~~~~~~ 287 (293)
|...+.|+-++.|.
T Consensus 326 DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 326 DSTVKLWEISTGRM 339 (430)
T ss_pred cceeeeeeecCCce
Confidence 98777776665544
No 119
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=5.7e-23 Score=168.01 Aligned_cols=249 Identities=18% Similarity=0.266 Sum_probs=182.9
Q ss_pred eeecCccccEEEEEECCCCC--eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 14 REYTGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.-|..+|++++|.|.-+ .+|+|+.-|+|-+||+..+.......+.+..|..+|.++.|+|.+...+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 33456788999999999765 6788999999999999633222223345778999999999999988899999999999
Q ss_pred EEEeCCCCeeeeeeeec---CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 92 RLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
++-|+..+.....+... .....+.|+.+...++.+..=|.+.+||+|...... ..+..
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-------------------~~~~l 320 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY-------------------ENLRL 320 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc-------------------hhhhh
Confidence 99999876543333331 123457787777778888777799999998754311 11122
Q ss_pred CCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEE----EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC-
Q 022716 169 GNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLC----VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH- 242 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~- 242 (293)
+...|..++++|... ++|+++.|++++|||+++... +-....|.-.|.+..|||.+..|+|-+.|..|+|||..
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 333567889999864 589999999999999976432 22334688899999999998889999999999999983
Q ss_pred ---CCCEEEEEec----CC--CcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 243 ---TGRTVHQIPC----RA--AMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 243 ---~~~~~~~~~~----~~--~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.-.....+.| .. ..-..+|.|+.++|++|-.-+-+=+.+
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 2223333332 12 234678999999999998765444433
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.8e-23 Score=171.82 Aligned_cols=249 Identities=16% Similarity=0.260 Sum_probs=187.4
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCc-eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
..|..-|.+++.|...+.+.||+. |.|||||+....... ...+....-.+.|.++...|++. -|++|++-.++.|||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc-eEEeccccceeeeee
Confidence 368888999999999999999885 889999996432111 11111222346788888999764 566899999999999
Q ss_pred CCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716 96 ARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 96 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
+......-..++.. ....++.+||.+..+++..||.|.+||+++...++.+. .+.+.
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------------------GhtDG 553 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------------------GHTDG 553 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------------------CCCCC
Confidence 97765433333332 23457889999999999999999999999876655432 34566
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-
Q 022716 173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP- 251 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~- 251 (293)
..||.++++|..|.+|+-|++|+.||++.++.+... .....|.++.++|++.+|+.|=+.+.+.+-.....+ .+++.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhl 631 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHL 631 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecc
Confidence 789999999999999999999999999998655332 223579999999999999999999988887764433 34443
Q ss_pred cCCCcceeEECCCCCeEEEEEcCCCCCCCCc-ceEEEEe
Q 022716 252 CRAAMNSVEWNPKYNLLAYAGDDKNKYQADE-GVFRIYG 289 (293)
Q Consensus 252 ~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~-~~~~~~~ 289 (293)
+.+-|-++.|++-|+.+++.|.|.-+.-|.. +=.+|++
T Consensus 632 heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq 670 (705)
T KOG0639|consen 632 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 670 (705)
T ss_pred cccEEEEEEecccCceeeecCchhhhhhccCccccceee
Confidence 4456889999999999999999986655554 3234444
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6.1e-23 Score=175.48 Aligned_cols=241 Identities=20% Similarity=0.269 Sum_probs=188.4
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeE-EEEcCCCCCEEEEEeCCCe
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-LCWDPKHADLIATASGDKT 90 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~-~~~~~~~~~~l~s~~~d~~ 90 (293)
..+++.||+..|..+++.+. ..++++|.||++++|+-..+. -.....+.+|.+.|.. +++-+.+...+++|+.|.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~--~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQ--YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcc--cccceecccCcceeeccceeccccCcceEeecccce
Confidence 34678899999999997754 489999999999999864322 1222346678887776 7776544446889999999
Q ss_pred EEEEeCCCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 91 VRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
+.+|...+......+..|. .+.++....++. +++|+.|.++++|-...... .+..|
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~----------------------~l~gH 139 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY----------------------SLQGH 139 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhc----------------------ccCCc
Confidence 9999998888877766544 455566566666 99999999999998643221 13456
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 249 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~ 249 (293)
...+++++.-|++ .++||+.|.+|++|.- ++.+++|.+|..-|+.+++-|++ .+++++.||.|++|+. +|..+..
T Consensus 140 ~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~ 214 (745)
T KOG0301|consen 140 TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLE 214 (745)
T ss_pred chheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeee
Confidence 7778888888888 8899999999999975 66789999999999999998876 4779999999999999 6777666
Q ss_pred Ee-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716 250 IP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 283 (293)
Q Consensus 250 ~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~ 283 (293)
+. +.+-+-+++-.+++..++++|.|+.+.||+.+
T Consensus 215 ~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 54 45557788877778899999999877777664
No 122
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=2e-21 Score=160.93 Aligned_cols=267 Identities=18% Similarity=0.273 Sum_probs=186.5
Q ss_pred CCcCccccccccee-------ecCc-cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEE
Q 022716 2 GESSIPFKNLHSRE-------YTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73 (293)
Q Consensus 2 ~~~~~~~~~~~~~~-------~~~h-~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~ 73 (293)
|++++.||....-. |.++ ++-|.|++|.++|+ .+||.++|.|.||+.... .... ...+|.+.|.+++
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---~~~k-~~~aH~ggv~~L~ 294 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN---RISK-QVHAHDGGVFSLC 294 (626)
T ss_pred CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---eEEe-EeeecCCceEEEE
Confidence 67778887654322 3333 36799999999986 679999999999998532 2222 2339999999999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Q 022716 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY 150 (293)
Q Consensus 74 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~ 150 (293)
...++ .|+||+.|..|..|| ...+.++..+.+. .+..++ +.+.-+++|+..+.|.-=.+.+...+....++.
T Consensus 295 ~lr~G--tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~--e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d 369 (626)
T KOG2106|consen 295 MLRDG--TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA--EGKGDILVGTTRNFILQGTLENGFTLTVQGHGD 369 (626)
T ss_pred EecCc--cEeecCccceEEecc-ccccccccccCchhcCCeeEEe--cCCCcEEEeeccceEEEeeecCCceEEEEeccc
Confidence 87653 466899999999999 4444444444433 333333 333337788777776655555544333333333
Q ss_pred eeeeeEEecCCCEEE------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC
Q 022716 151 EVNEIAWNMTGEMFF------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 212 (293)
Q Consensus 151 ~~~~v~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~ 212 (293)
+...++-+|..+.+. ..--..++.|++|+|.| .+|.|+..|...+.|+++...+.... ..
T Consensus 370 elwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~ 447 (626)
T KOG2106|consen 370 ELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DN 447 (626)
T ss_pred ceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cC
Confidence 444444444333322 22223567899999999 99999999999999999966554443 37
Q ss_pred CCeeEEEEccCCCEEEEecCCCcEEEEEcCC-CCEEEEE--ecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716 213 WPVRTISFSHTGDYIASASEDLFIDISNVHT-GRTVHQI--PCRAAMNSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 213 ~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~-~~~~~~~--~~~~~i~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
.+++.++|+|+|.+||.|+.|+.|+||-+.. +.+.... -..++|+.+.||+|++++.+-+-|=.+-.|
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 8999999999999999999999999999865 4443322 223789999999999999998877555444
No 123
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.2e-22 Score=166.94 Aligned_cols=266 Identities=21% Similarity=0.279 Sum_probs=192.0
Q ss_pred cccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716 6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85 (293)
Q Consensus 6 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~ 85 (293)
-||...+.-.|.||++.|.|+...|.|.+|++|+.||+||||.+.... ++....+ .+.|.+++|+|.....++.+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--cvr~~~~---d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--CVRTVQF---DSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--EEEEEee---cceeEEEEecCCCCceeEEE
Confidence 367777778899999999999999999999999999999999997542 2222223 34799999999765555555
Q ss_pred eCCCeEEEEeCCCCeee--------------------------------------eeeeecCceEEEEEcCCCCEEEEEe
Q 022716 86 SGDKTVRLWDARSGKCS--------------------------------------QQAELSGENINITYKPDGTHIAVGN 127 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~ 127 (293)
+.+..+.+-+..-|..+ ..+.+...+..+.|+..|.||++..
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 55555555543222100 0111222344688999999999987
Q ss_pred CC---CeEEEEEccccceeeee-cccceeeeeEEecCCCEEEEecCC--------------------CCEEEEEECCCCC
Q 022716 128 RD---DELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGN--------------------AGCYCIAIDPMGR 183 (293)
Q Consensus 128 ~d---~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 183 (293)
.+ ..+.+.++.......-+ +-...++.+.|+|....++++... ..+..+++||.|.
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 54 46778887654333222 234568889999998877766543 2466789999999
Q ss_pred EEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC------C---EEEEEecC
Q 022716 184 YFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG------R---TVHQIPCR 253 (293)
Q Consensus 184 ~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~------~---~~~~~~~~ 253 (293)
-|+.|+.|+.+..||+.-. +..+++.-|...+++|+|++.-.++++|+.|+++.|+-..-. - .++.+..+
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 9999999999999999754 344567778899999999999999999999999987743221 1 12333333
Q ss_pred C-----CcceeEECCCCCeEEEEEcCCC
Q 022716 254 A-----AMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 254 ~-----~i~~~~~sp~~~~la~~~~d~~ 276 (293)
. .|-.+.|||....|.++|.|+.
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~t 728 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGT 728 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCce
Confidence 2 3556779999999999999853
No 124
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.1e-24 Score=189.87 Aligned_cols=247 Identities=21% Similarity=0.350 Sum_probs=189.5
Q ss_pred cccEEEEEECCCCCe----EEEEeCCCcEEEeecCCC--CCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 20 KKKVHSVAWNCTGTK----LASGSVDQTARVWHIEPH--GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~----l~s~~~dg~v~iw~~~~~--~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
..+-+.|+|.+.|.. ||.|..||.|-+||.... ............|++.|..+.|++..+++|+||+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 357889999988766 888999999999998652 11111122456799999999999998889999999999999
Q ss_pred EeCCCCeeeeee---eecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 94 WDARSGKCSQQA---ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 94 wd~~~~~~~~~~---~~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
||+++-+..... ...+.+.+++|... ...|++++.+|+..+||+|..+++-..... ..
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~------------------~~ 205 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT------------------PG 205 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC------------------CC
Confidence 999875543332 23456778888753 456888888999999999987654332211 11
Q ss_pred CCCEEEEEECCCC-CEEEEecCCC---cEEEEeCCC-CEEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCC
Q 022716 170 NAGCYCIAIDPMG-RYFAVGSADS---LVSLWDISE-MLCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHT 243 (293)
Q Consensus 170 ~~~~~~~~~~~~~-~~l~~gs~d~---~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~ 243 (293)
...+..++|||+. ..+++++.|. .|.+||++. ...++.+++|...|.+++|++.+ ++|+|++.|+.|.+|+.++
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 2345678888886 4566665553 599999875 34567788999999999999977 8899999999999999999
Q ss_pred CCEEEEEec-CCCcceeEECCCCC-eEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 244 GRTVHQIPC-RAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 244 ~~~~~~~~~-~~~i~~~~~sp~~~-~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
++.+..++. ...+..+.|.|... .||.++-| |.+-||+++.
T Consensus 286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfd--------gkI~I~sl~~ 328 (1049)
T KOG0307|consen 286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFD--------GKISIYSLQG 328 (1049)
T ss_pred ceEeeecCCCCcceeeeeecCCCcchhhhheec--------cceeeeeeec
Confidence 999998876 45699999999875 89999987 5666776653
No 125
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.2e-22 Score=168.24 Aligned_cols=231 Identities=20% Similarity=0.357 Sum_probs=180.5
Q ss_pred EEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716 26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA 105 (293)
Q Consensus 26 l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 105 (293)
+.|+ ..+.||.|. ...|.+|+.... ....+. .-+...|+++.|++++ ..|+.|..+|.|.|||....+....+
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~---~v~~l~-~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSG---SVTELC-SFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCC---ceEEeE-ecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccc
Confidence 4566 344666665 468999997643 222222 1237889999999975 68899999999999999877766655
Q ss_pred ee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC
Q 022716 106 EL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR 183 (293)
Q Consensus 106 ~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (293)
.. ...+.+++|. +..+.+|+.++.|..+|+|..+..... +..|...+--+.++++++
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~-------------------~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST-------------------LQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh-------------------hhcccceeeeeEECCCCC
Confidence 54 4556678887 678999999999999999876543321 112333455688899999
Q ss_pred EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC-CCEEEEec--CCCcEEEEEcCCCCEEEEEecCCCcceeE
Q 022716 184 YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-GDYIASAS--EDLFIDISNVHTGRTVHQIPCRAAMNSVE 260 (293)
Q Consensus 184 ~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s--~d~~i~iw~~~~~~~~~~~~~~~~i~~~~ 260 (293)
++|+|+.|+.+.|||....+++..+.+|...|.+++|+|- ...||+|+ .|+.|++||+.++..+.......-|.+|.
T Consensus 315 ~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~ 394 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLI 394 (484)
T ss_pred eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEE
Confidence 9999999999999999888888899999999999999994 56889875 79999999999999999998888999999
Q ss_pred ECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 261 WNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 261 ~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
|+|..+-|+++.... +..++||.+
T Consensus 395 Wsk~~kEi~sthG~s------~n~i~lw~~ 418 (484)
T KOG0305|consen 395 WSKKYKELLSTHGYS------ENQITLWKY 418 (484)
T ss_pred EcCCCCEEEEecCCC------CCcEEEEec
Confidence 999997777776542 236777766
No 126
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7e-22 Score=154.92 Aligned_cols=207 Identities=21% Similarity=0.277 Sum_probs=153.5
Q ss_pred ccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 9 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
.+..++.|.||+..|.+|+.+|-++.+++++.|++||+||+....+... + +...-...+|.|++ -+++.+...
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~----l--~~~~~pi~AfDp~G-LifA~~~~~ 161 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL----L--NLSGRPIAAFDPEG-LIFALANGS 161 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE----E--ecCCCcceeECCCC-cEEEEecCC
Confidence 5567888999999999999999999999999999999999985432221 1 11222345788874 566666666
Q ss_pred CeEEEEeCCCCee--eeeeee----cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716 89 KTVRLWDARSGKC--SQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 89 ~~i~vwd~~~~~~--~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
..|++||+++-.. ...+.. ..+...+.|+|||++++.++..+.+.+.|.=++........ .+.+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~---------~~~~- 231 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG---------YPNA- 231 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee---------ccCC-
Confidence 6999999976521 122222 23455799999999999999999999999766554333211 0110
Q ss_pred EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
..-.....|+|+++++++|+.||+|++|+++++..+..+.+ +..++.++.|+|....+|+++. .+.+|=.
T Consensus 232 -------~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p 302 (311)
T KOG1446|consen 232 -------GNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLP 302 (311)
T ss_pred -------CCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEec
Confidence 11124578899999999999999999999999999999888 5789999999999888877654 4666644
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.8e-24 Score=184.36 Aligned_cols=220 Identities=23% Similarity=0.359 Sum_probs=180.0
Q ss_pred eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee-cCceE
Q 022716 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENI 112 (293)
Q Consensus 34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~ 112 (293)
++.....+-.+++|+.. ++..|...+.++.. ......+++|++|..+-+|.+....+...+.. ...+-
T Consensus 6 ~~m~~~~~t~Lr~~~~~----------~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe 74 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTR----------EFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE 74 (825)
T ss_pred ccceeeeeeccccccch----------hhhhhhhhhceeee-eccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence 34455556667788764 24468888887776 33457889999999999999876665555443 45566
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC
Q 022716 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS 192 (293)
Q Consensus 113 ~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~ 192 (293)
++.|+++...+++|+.+|+|++||+...+.++. +.++-..+.+++|+|-+.++|+|+.|.
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDleeAk~vrt--------------------Ltgh~~~~~sv~f~P~~~~~a~gStdt 134 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT--------------------LTGHLLNITSVDFHPYGEFFASGSTDT 134 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhhhhhhhh--------------------hhccccCcceeeeccceEEeccccccc
Confidence 899999999999999999999999987654442 335556678899999999999999999
Q ss_pred cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEE
Q 022716 193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 193 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~ 271 (293)
.+.+||.+..-+.+.+.+|.+.+..++|+|+|+++++|++|..++|||...|+.++.+. +..++.+++|+|..-+++.|
T Consensus 135 d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 135 DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred cceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccC
Confidence 99999999887889999999999999999999999999999999999999999988887 56789999999999999999
Q ss_pred EcCCCCCCCCcce
Q 022716 272 GDDKNKYQADEGV 284 (293)
Q Consensus 272 ~~d~~~~~~~~~~ 284 (293)
|.|+.+..|+..+
T Consensus 215 s~d~tv~f~dlet 227 (825)
T KOG0267|consen 215 SSDRTVRFWDLET 227 (825)
T ss_pred CCCceeeeeccce
Confidence 9996444444443
No 128
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-20 Score=141.37 Aligned_cols=240 Identities=22% Similarity=0.341 Sum_probs=175.7
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCC------CC----CC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP------HG----HG-KVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~------~~----~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
.-...|.+++|.|.|..-+.|+..++.||-.... .. .+ ......-+.|.+.|++.+|+|. ++++++|+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGS 108 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEecC
Confidence 3456899999999999999999999999864311 00 11 1112223458899999999997 47999999
Q ss_pred CCCeEEEEeCCCCeeee-----eee-ecCceEEEEEcC----CCCEEEEEe-CCCeEEEEEccccceeeeecccceeeee
Q 022716 87 GDKTVRLWDARSGKCSQ-----QAE-LSGENINITYKP----DGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEI 155 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~~~-----~~~-~~~~~~~~~~~~----~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v 155 (293)
+|++|++...+...+.. .+. +.+.+..++|-. .+..|++++ .|..|.+-|-...+..+..
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~--------- 179 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL--------- 179 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee---------
Confidence 99999998766554432 122 345566788743 245666655 3666777676655544332
Q ss_pred EEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--c-----CCCeeEEEEccCCCEEE
Q 022716 156 AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--L-----EWPVRTISFSHTGDYIA 228 (293)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~-----~~~v~~l~~sp~~~~l~ 228 (293)
..+.+.+.++ ++-++-.+++|+.|.+|++||++-..+++++-. | ...|.+++..|.|++|+
T Consensus 180 -----------sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 180 -----------SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred -----------cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 2233344333 234677899999999999999987777776532 1 24699999999999999
Q ss_pred EecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 229 SASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
+|-.|....+||++.++.+..+ ++...|+++.|||.--|+.+++.|..+..
T Consensus 248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEE
Confidence 9999999999999999998765 56778999999998899999999876654
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=9.1e-23 Score=162.49 Aligned_cols=232 Identities=18% Similarity=0.327 Sum_probs=175.7
Q ss_pred CcCccccccc----ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC
Q 022716 3 ESSIPFKNLH----SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78 (293)
Q Consensus 3 ~~~~~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 78 (293)
++.+..|++. .+.+..|.+.|..|+++- ..++|+|+|++|+.|..+.. ... ...+ ...+..+.-+..
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~---p~~--tilg-~s~~~gIdh~~~- 158 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP---PLH--TILG-KSVYLGIDHHRK- 158 (433)
T ss_pred CceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC---cce--eeec-cccccccccccc-
Confidence 3446666654 466889999999999986 67899999999999987631 111 1111 233445554433
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA 156 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~ 156 (293)
.+.++|+|++ |.|||.....++..+..... ..++.|+|-.. .|+++.+|+.|.|+|+|...|++........+.+.
T Consensus 159 ~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Is 236 (433)
T KOG0268|consen 159 NSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTIC 236 (433)
T ss_pred cccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccccee
Confidence 4578888755 99999988777777776544 56789998655 55666699999999999999999999999999999
Q ss_pred EecCCCEEEEecCC----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCC
Q 022716 157 WNMTGEMFFLTTGN----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEW 213 (293)
Q Consensus 157 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~ 213 (293)
|+|..-.+..+..+ +.+..++|+|.|+.+++||-|.+|+||....+....... .-..
T Consensus 237 wnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq 316 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ 316 (433)
T ss_pred cCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh
Confidence 99944333332221 357789999999999999999999999998775443321 1235
Q ss_pred CeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~ 245 (293)
.|.++.||.|.+|+++||+|+.|++|...-.+
T Consensus 317 ~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 317 HVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred eeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 79999999999999999999999999875443
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=6.3e-22 Score=169.33 Aligned_cols=246 Identities=17% Similarity=0.253 Sum_probs=180.1
Q ss_pred CcCccccccccee------ecCccccEEE-EEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE
Q 022716 3 ESSIPFKNLHSRE------YTGHKKKVHS-VAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74 (293)
Q Consensus 3 ~~~~~~~~~~~~~------~~~h~~~v~~-l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~ 74 (293)
+..+.+|..+..+ +.+|.+-|.+ ++|-+ ++-+|++|+.|.++.+|.+... .....+.+|+..|.+++.
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~----~P~~~LkgH~snVC~ls~ 109 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA----EPLYTLKGHKSNVCSLSI 109 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC----Cchhhhhccccceeeeec
Confidence 3345555544333 4557777777 77775 4446999999999999988632 234568899999999986
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN 153 (293)
Q Consensus 75 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~ 153 (293)
..++ .++|||+|.++++|-. +++...++ +...+..++.-|++ .+++|+.|.+|++|.-.+ .++..
T Consensus 110 ~~~~--~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~l~tf------- 175 (745)
T KOG0301|consen 110 GEDG--TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--LLKTF------- 175 (745)
T ss_pred CCcC--ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--hhhhh-------
Confidence 5443 3889999999999965 34444444 34456677777877 899999999999998532 22221
Q ss_pred eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC
Q 022716 154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 233 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d 233 (293)
..|.+-+-.+++-|+ ..+++++.||.|++|++ +++++.++.+|..-+.+++..++++.++|+++|
T Consensus 176 -------------~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 176 -------------SGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGED 240 (745)
T ss_pred -------------ccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCC
Confidence 123333445666554 45789999999999999 778888999999999999988999999999999
Q ss_pred CcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 234 LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 234 ~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
++++||+.. .....+.+ ...|.++.+-++|. |++|+.| |.+|||..++
T Consensus 241 rtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SD--------G~VrVfT~~k 289 (745)
T KOG0301|consen 241 RTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSD--------GRVRVFTVDK 289 (745)
T ss_pred ceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccC--------ceEEEEEecc
Confidence 999999987 44444443 33688888878775 5666666 6788887764
No 131
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=5.3e-22 Score=168.36 Aligned_cols=260 Identities=20% Similarity=0.288 Sum_probs=179.9
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+.+..|...|..+.|-|-..+|++++.|.++|+||+......... .+.||...|.+++|.|.+..+|++|+.||.|.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~--~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~il 170 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR--LNLGHTGSVKSECFMPTNPAVFCTGGRDGEIL 170 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce--eecccccccchhhhccCCCcceeeccCCCcEE
Confidence 3556789999999999996678999999999999999854322221 35699999999999999999999999999999
Q ss_pred EEeCCCCe-------eeeeee-ecC--------------------ce---EEEEEcCCCCEEEEEeC-CCeEEEEEcccc
Q 022716 93 LWDARSGK-------CSQQAE-LSG--------------------EN---INITYKPDGTHIAVGNR-DDELTILDVRKF 140 (293)
Q Consensus 93 vwd~~~~~-------~~~~~~-~~~--------------------~~---~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~ 140 (293)
|||++-.. +..... +.+ .+ +.+.+..|...|++++. |+.|++||+++.
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 99985332 000000 000 01 12445567788888887 999999999875
Q ss_pred ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeeccCC---Ce
Q 022716 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLEW---PV 215 (293)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~~~~---~v 215 (293)
....+.... .+.. +. ......-.++++..+..|.+|.+...|++|++|++... ..+..+.++.. .+
T Consensus 251 ~~~~r~ep~-~~~~--~~------t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~v 321 (720)
T KOG0321|consen 251 YTAYRQEPR-GSDK--YP------THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYV 321 (720)
T ss_pred ccccccCCC-cccC--cc------CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeee
Confidence 533221100 0000 00 00011234678888888988888878999999998653 22333444322 23
Q ss_pred eEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--EEecCCCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 216 RTISFSHTGDYIASASEDLFIDISNVHTGRTVH--QIPCRAAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 216 ~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~--~~~~~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.+ ..+|++.+|++|+.|...++|.+.....-. .+.+...|+++.|.|.- .-+|++++| -.+|||.+++
T Consensus 322 ks-~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD--------~~~kiW~l~~ 392 (720)
T KOG0321|consen 322 KS-ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD--------FRVKIWRLSN 392 (720)
T ss_pred ee-ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC--------cceEEEeccC
Confidence 33 368999999999999999999998765432 23455579999999854 567888877 4678887765
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.6e-22 Score=163.73 Aligned_cols=208 Identities=20% Similarity=0.310 Sum_probs=163.4
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCC-----CCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEe
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-----HGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATAS 86 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~-----~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~ 86 (293)
...+.+|...|+|+.|+.||..|+|||.||.|.+|++.. ..........+..|.-+|+++...+-+ ...|+|+|
T Consensus 116 L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 116 LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence 345679999999999999999999999999999998731 111233345688899999999876542 35799999
Q ss_pred CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE-EE
Q 022716 87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM-FF 165 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 165 (293)
.|.++++||+-.+..+..+.++....+++.+|.++.+.+|+++|.|.+.++.+....+. .++.-..++.+.. ..
T Consensus 196 ~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~-----~v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA-----GVNQKGRHEENTQINV 270 (476)
T ss_pred CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc-----cccccccccccceeee
Confidence 99999999999999998888899999999999999999999999999988755332111 1111112222221 22
Q ss_pred EecCCC--CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC
Q 022716 166 LTTGNA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD 225 (293)
Q Consensus 166 ~~~~~~--~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 225 (293)
+..+.. .|+|++++-||..|++|+.||++.+||+.+..+++++....++|+.+.+.|--+
T Consensus 271 ~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 271 LVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred eccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 334444 899999999999999999999999999999888888876788999999977543
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.3e-21 Score=163.32 Aligned_cols=237 Identities=18% Similarity=0.281 Sum_probs=186.2
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
-.++|.++||+.+.++||.+-.||.|.+|++.... .....+.++. ..|-.++|.+. ..|+|.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w---~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW---FLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCc---eeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEEecc
Confidence 35799999999999999999999999999997632 2223455554 56999999853 457899999999999999
Q ss_pred CCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 98 SGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
+.+....+.. .+...+++.+|.++.++.|+.||.+..++...........++ -..+.+.++
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~------------------rq~sRvLsl 160 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM------------------RQKSRVLSL 160 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc------------------cccceEEEE
Confidence 9988877764 455678999999999999999997777777665544333222 123567899
Q ss_pred EECCCCCEEEEecCCCcEEEEeCCCCEEEEEe----ecc----CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716 177 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTF----TKL----EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 248 (293)
Q Consensus 177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~----~~~----~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~ 248 (293)
+|+|++..+++|+.||.|++||...+..+... .+. .--|.++.|-.++ .+++|..-|+|++||...+.++.
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh
Confidence 99999999999999999999999988665511 111 1236667766444 68999999999999999998876
Q ss_pred EEe-cCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 249 QIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 249 ~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
... +...|.+++-+++++++.++|.|+.+.+
T Consensus 240 S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 240 SHSCHDADVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred hhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence 554 4567999999999999999999986655
No 134
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1e-20 Score=148.33 Aligned_cols=226 Identities=16% Similarity=0.337 Sum_probs=164.2
Q ss_pred eEEEEeCCCcEEEeecCCCCCC----c----eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716 34 KLASGSVDQTARVWHIEPHGHG----K----VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA 105 (293)
Q Consensus 34 ~l~s~~~dg~v~iw~~~~~~~~----~----~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 105 (293)
.|+.|+....|.=++++..... + .....+++|..+|++++.+ +.+++|||.|.+|+|||++.......+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcce
Confidence 3667777777776766543211 1 1123467899999999985 358999999999999999887665554
Q ss_pred -eecCceEEEEEcCCCC--EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716 106 -ELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG 182 (293)
Q Consensus 106 -~~~~~~~~~~~~~~~~--~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (293)
.+.+.+.++.|.++-. .|++|+.||.|.+|+......+... -.+.+.++.+++||.+
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl--------------------K~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL--------------------KAHKGQVTDLSIHPSG 139 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee--------------------cccccccceeEecCCC
Confidence 3456778899987665 8999999999999998876554432 2345568889999999
Q ss_pred CEEEEecCCCcEEEEeCCCCEEEEEee-------------------------------------ccCCC--eeEEEEccC
Q 022716 183 RYFAVGSADSLVSLWDISEMLCVRTFT-------------------------------------KLEWP--VRTISFSHT 223 (293)
Q Consensus 183 ~~l~~gs~d~~i~iwd~~~~~~~~~~~-------------------------------------~~~~~--v~~l~~sp~ 223 (293)
++-++.+.|+.+++||+-.++....+. ...++ +.++.| -+
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~-l~ 218 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF-LD 218 (362)
T ss_pred ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee-cC
Confidence 999999999999999986553321110 01112 222222 24
Q ss_pred CCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEE--CCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 224 GDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEW--NPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~--sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
+.+|++|++|+.|.+||..+......+ .+..+|.++.+ +|++.+|+++|.|+ .+|||+++
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG--------~I~vWd~~ 281 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDG--------FIKVWDID 281 (362)
T ss_pred CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCc--------eEEEEEcc
Confidence 568999999999999999987776655 45678988884 68889999999995 55566554
No 135
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=6.6e-22 Score=164.13 Aligned_cols=218 Identities=20% Similarity=0.281 Sum_probs=154.2
Q ss_pred eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-e----eeeeecC-ceEEEEEcCCCCEEEEEeCCCe
Q 022716 58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-S----QQAELSG-ENINITYKPDGTHIAVGNRDDE 131 (293)
Q Consensus 58 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~----~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~ 131 (293)
..+.+++|+..|.++++.|.+ ..|+||+.|-.|++||+..=.. . ....... .+.+++|++.|..+++.+....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred ceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 356788999999999999975 5688999999999999853211 1 1111222 3457999999999999998999
Q ss_pred EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEE-EEEee
Q 022716 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC-VRTFT 209 (293)
Q Consensus 132 i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~-~~~~~ 209 (293)
.+++|-..+..+.-.+-..=|. ++.....|-..++|.+|+|.. ..+++++.||+++|||+.+... ++.++
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~--------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIR--------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred eeEEccCCceeeeeeccchhhh--------hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 9999976654333221110000 111122344567888999986 5799999999999999875432 22222
Q ss_pred -----ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC--E-EEEEe-c--CCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 210 -----KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR--T-VHQIP-C--RAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 210 -----~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~--~-~~~~~-~--~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
+-.-++++++|+|+|+++|+|..||.|.+|+..... . .+... | ...|++|+||++|++|++-|.|
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D---- 385 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD---- 385 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC----
Confidence 223478999999999999999999999999974322 1 12112 2 2369999999999999999988
Q ss_pred CCCcceEEEEeeec
Q 022716 279 QADEGVFRIYGFEN 292 (293)
Q Consensus 279 ~~~~~~~~~~~~~~ 292 (293)
+++|+|++.+
T Consensus 386 ----~tLKvWDLrq 395 (641)
T KOG0772|consen 386 ----DTLKVWDLRQ 395 (641)
T ss_pred ----Cceeeeeccc
Confidence 4677777654
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2.7e-21 Score=150.49 Aligned_cols=201 Identities=21% Similarity=0.341 Sum_probs=152.7
Q ss_pred eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe------------eeeeeee-cC---ceEEEEEcC-CCCEEEE
Q 022716 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK------------CSQQAEL-SG---ENINITYKP-DGTHIAV 125 (293)
Q Consensus 63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~------------~~~~~~~-~~---~~~~~~~~~-~~~~l~~ 125 (293)
..|.+.|+++...+..+.+++||+.||.|.+||+++.. |.-..++ .+ .+..+.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35888999999988888999999999999999997653 1100011 11 233566777 4445677
Q ss_pred EeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCC
Q 022716 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEM 202 (293)
Q Consensus 126 ~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~ 202 (293)
++-|.++++||.++.+..-..+++.. +++-+++|. ..++|+|..+-.|++.|++.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~---------------------VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGK---------------------VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred ccccceEEEeecccceeeEEeecCce---------------------eehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 77899999999988665544444332 344455554 347899999999999999999
Q ss_pred EEEEEeeccCCCeeEEEEccCCCE-EEEecCCCcEEEEEcCCC-CEEEEE---------------ecCCCcceeEECCCC
Q 022716 203 LCVRTFTKLEWPVRTISFSHTGDY-IASASEDLFIDISNVHTG-RTVHQI---------------PCRAAMNSVEWNPKY 265 (293)
Q Consensus 203 ~~~~~~~~~~~~v~~l~~sp~~~~-l~s~s~d~~i~iw~~~~~-~~~~~~---------------~~~~~i~~~~~sp~~ 265 (293)
..-+++.+|...|.++.|+|...+ |++||.||.|++||++.- .....+ .+.+.++.++|+.++
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~ 258 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA 258 (397)
T ss_pred cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence 999999999999999999999987 599999999999999753 122111 233568899999999
Q ss_pred CeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 266 NLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 266 ~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.++++.+.| ..+|+||+|+
T Consensus 259 ~~l~~~gtd--------~r~r~wn~~~ 277 (397)
T KOG4283|consen 259 RYLASCGTD--------DRIRVWNMES 277 (397)
T ss_pred hhhhhccCc--------cceEEeeccc
Confidence 999999987 4688888876
No 137
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=2.5e-21 Score=166.40 Aligned_cols=246 Identities=18% Similarity=0.247 Sum_probs=190.0
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC--CCCEEEEEeCCCeEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTVRL 93 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~~l~s~~~d~~i~v 93 (293)
..+-...+.+++.||+|+.||+|..-|.+|+|++.+-. ......+|...|.++.|+.. ...+|++++.|..|+|
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~----~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE----YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhh----hhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 34556789999999999999999999999999996422 22346789999999999643 2468999999999999
Q ss_pred EeCCCC-eeeeeee-ecCceEEEEEcCCC--CEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEec
Q 022716 94 WDARSG-KCSQQAE-LSGENINITYKPDG--THIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 94 wd~~~~-~~~~~~~-~~~~~~~~~~~~~~--~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
+|+... ..++.+. +...++++.|.-.| ..+++++.|..+. ++...+.. ... + +.+ .-+.
T Consensus 531 ~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~--f----------~r~---t~t~ 594 (1080)
T KOG1408|consen 531 YDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRL--F----------PRH---TQTL 594 (1080)
T ss_pred EecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCcee--c----------ccc---cccc
Confidence 998543 3444443 35567788887766 6788888887653 33322110 000 0 000 0112
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec---cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~ 245 (293)
....++.+++.|..++++++..|..|+|||+++++..+.|++ |++..-.+...|.|.|||+...|.++.++|+-+|+
T Consensus 595 ~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 595 SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccch
Confidence 234578899999999999999999999999999999999876 55677788899999999999999999999999999
Q ss_pred EEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 246 TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 246 ~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.+-++. +..-|+.+.|.||.++|++.+.|+=|++|.
T Consensus 675 cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 675 CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 987765 445689999999999999999998666554
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.6e-20 Score=161.96 Aligned_cols=237 Identities=20% Similarity=0.241 Sum_probs=180.0
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
|...|.+++- .++.|++|+.+++|.+|.+.+...... +..-.-++..++++.. +..++.||.|-.|++-+...
T Consensus 55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i----L~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI----LARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred cCceeEEEee--cccceEEeeccceEEEeeCCCCCccce----eeeeeccceEEEEecC-CcEEEeecCceeEEEEeccc
Confidence 6678888874 566999999999999999876543322 2223457888999875 56899999999999999987
Q ss_pred Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716 99 GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177 (293)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
......+. +.+++.++.|.|++..|++.+.||.+++||+.++...+....-...+.. .....+..++
T Consensus 128 ~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~------------~~s~i~~~~a 195 (933)
T KOG1274|consen 128 SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF------------ILSRICTRLA 195 (933)
T ss_pred cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc------------cccceeeeee
Confidence 76655544 6678889999999999999999999999999876654432210000000 0023456789
Q ss_pred ECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716 178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA 255 (293)
Q Consensus 178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~ 255 (293)
|+|++..++....|+.|.+|+...++....+.. +...+..+.|+|+|+|||+++.||.|.|||+++-.. + .....
T Consensus 196 W~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~--~~~~~ 272 (933)
T KOG1274|consen 196 WHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H--EFKRA 272 (933)
T ss_pred ecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c--cccce
Confidence 999999999999999999999999987776654 334589999999999999999999999999987221 1 22456
Q ss_pred cceeEECCCCCeEEEEEcCCCC
Q 022716 256 MNSVEWNPKYNLLAYAGDDKNK 277 (293)
Q Consensus 256 i~~~~~sp~~~~la~~~~d~~~ 277 (293)
|.+++|.|+.+-|-.-...++.
T Consensus 273 Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 273 VCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred eEEEecCCCCCeeEEEeecccc
Confidence 8999999999877665554433
No 139
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=3.1e-19 Score=155.88 Aligned_cols=270 Identities=12% Similarity=0.173 Sum_probs=198.9
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
...+|.++.+.|+++.=+|.=+.+|.|..+|+|.++++.... . ...++...+.|++++|-.++.-++++|...|.+
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk--i--l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK--I--LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCc--E--EEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 456788999999999999999999999999999999997531 2 223433358999999988888889999999999
Q ss_pred EEEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc--ccceeeee---cccce-------------
Q 022716 92 RLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVR--KFKPIHRR---KFGYE------------- 151 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~--~~~~~~~~---~~~~~------------- 151 (293)
.+||++..+...... +.+.+....|.|....+++.+.|+.+++|-.. ...|...+ .+..+
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 999998877655543 33667778888888889999999988877322 11110000 00000
Q ss_pred ------------------------------------------------------------------------eeeeEEec
Q 022716 152 ------------------------------------------------------------------------VNEIAWNM 159 (293)
Q Consensus 152 ------------------------------------------------------------------------~~~v~~~~ 159 (293)
...-.|+.
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 00001221
Q ss_pred CC----CEEEEec----CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe---eccCCCeeEEEEccCCCEEE
Q 022716 160 TG----EMFFLTT----GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF---TKLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 160 ~~----~~~~~~~----~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~ 228 (293)
.. +..+-.. .+..+.+++++++|++.+.|++.|.|-+|+++++....++ ..|..+|+.++...-++.++
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v 509 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV 509 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE
Confidence 11 1111111 1245789999999999999999999999999999888888 47899999999988889999
Q ss_pred EecCCCcEEEEEcCCCCEEEEE------------------------------------------ecCCCcceeEECCCCC
Q 022716 229 SASEDLFIDISNVHTGRTVHQI------------------------------------------PCRAAMNSVEWNPKYN 266 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~~~~~~------------------------------------------~~~~~i~~~~~sp~~~ 266 (293)
+++.||.+++||..+...+..+ .+...|+++.|||||.
T Consensus 510 sa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 510 SAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR 589 (910)
T ss_pred EccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence 9999999999998765422111 1335788999999999
Q ss_pred eEEEEEcCCCCCCCCcceE
Q 022716 267 LLAYAGDDKNKYQADEGVF 285 (293)
Q Consensus 267 ~la~~~~d~~~~~~~~~~~ 285 (293)
.|++++.|+.+++||--+.
T Consensus 590 WlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTG 608 (910)
T ss_pred EEEEeecCCcEEEEeccCc
Confidence 9999999977776665443
No 140
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.9e-21 Score=144.46 Aligned_cols=214 Identities=24% Similarity=0.281 Sum_probs=153.8
Q ss_pred ccceeecCccccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeC
Q 022716 11 LHSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASG 87 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~ 87 (293)
.+..++.||.++|..++|-+ .|..||+++.||+|.||.-+.....+ ......|...|++++|-|.+. -.|++++.
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k--~~e~~~h~~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK--AYEHAAHSASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh--hhhhhhhcccceeecccccccceEEEEeeC
Confidence 35678999999999999986 89999999999999999866443222 234568999999999988654 46888999
Q ss_pred CCeEEEEeCCCC-ee-ee-ee-eecCceEEEEEcCC---C-----------CEEEEEeCCCeEEEEEccccceeeee---
Q 022716 88 DKTVRLWDARSG-KC-SQ-QA-ELSGENINITYKPD---G-----------THIAVGNRDDELTILDVRKFKPIHRR--- 146 (293)
Q Consensus 88 d~~i~vwd~~~~-~~-~~-~~-~~~~~~~~~~~~~~---~-----------~~l~~~~~d~~i~l~d~~~~~~~~~~--- 146 (293)
||.|.|.+.+.. .- .. .. -+.-.+.++.|.|. | +.|++|+.|+.+++|+..+..-....
T Consensus 125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~ 204 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE 204 (299)
T ss_pred CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence 999999988665 11 11 11 12334556777765 4 56999999999999998775322111
Q ss_pred cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-E--EEEEeeccCCCeeEEEEccC
Q 022716 147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-L--CVRTFTKLEWPVRTISFSHT 223 (293)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~--~~~~~~~~~~~v~~l~~sp~ 223 (293)
.+..=+++++|.|.-. -...++|+++.||++.||..+.- + ....++....++..++||+.
T Consensus 205 ~H~dwVRDVAwaP~~g-----------------l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s 267 (299)
T KOG1332|consen 205 GHKDWVRDVAWAPSVG-----------------LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS 267 (299)
T ss_pred hcchhhhhhhhccccC-----------------CCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc
Confidence 1122245555543311 12357999999999999976421 1 12233445678999999999
Q ss_pred CCEEEEecCCCcEEEEEcCC
Q 022716 224 GDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 224 ~~~l~s~s~d~~i~iw~~~~ 243 (293)
|..|+.++.|+.+++|.-..
T Consensus 268 Gn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 268 GNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccEEEEecCCcEEEEEEeCC
Confidence 99999999999999997654
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=151.48 Aligned_cols=209 Identities=23% Similarity=0.371 Sum_probs=157.7
Q ss_pred ccceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 11 LHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
.++..+.+|+..-..|.|||-- ..|+||..-+.|++|...+.. -..-...+.+|+..|-.+.|+|....+|+|||.|+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~-W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS-WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccccceEeeeeccCc-eeecCccccccccchhhhccCCccCceEEeeecCc
Confidence 4566788999999999999943 358899999999999886532 22233457789999999999999888999999999
Q ss_pred eEEEEeCCCCe---eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 90 TVRLWDARSGK---CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 90 ~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
.|+|||++.+. ++..-.+.+.+..+.|+..-.+|++|+.||++++||+|+.+.- .+|- .+
T Consensus 281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~------~pVA-----------~f 343 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG------QPVA-----------TF 343 (440)
T ss_pred eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC------Ccce-----------eE
Confidence 99999999883 4444345566777889877778999999999999999986532 2222 23
Q ss_pred ecCCCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCC--------E--------EEEEeeccC--CCeeEEEEccCC-CE
Q 022716 167 TTGNAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEM--------L--------CVRTFTKLE--WPVRTISFSHTG-DY 226 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~--------~--------~~~~~~~~~--~~v~~l~~sp~~-~~ 226 (293)
..|..+|++|.|+|. ...+++++.|+.|.|||+.-- + +.+.+.-|. ..+..+.|+++- .+
T Consensus 344 k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~ 423 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGL 423 (440)
T ss_pred EeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCe
Confidence 346788999999986 467888999999999997410 0 111222342 357788898874 47
Q ss_pred EEEecCCCcEE
Q 022716 227 IASASEDLFID 237 (293)
Q Consensus 227 l~s~s~d~~i~ 237 (293)
|++-+.||.-.
T Consensus 424 lvsTa~dGfnV 434 (440)
T KOG0302|consen 424 LVSTAIDGFNV 434 (440)
T ss_pred EEEecccceeE
Confidence 88888888643
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=4.2e-19 Score=147.28 Aligned_cols=251 Identities=15% Similarity=0.221 Sum_probs=181.0
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC-cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
+..|....|.|.+..|+.....|.+..|+.+.....+... .+.++ +..|.+++|.+++ + ++||..+|.|.||+...
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~-~fek~ekk~Vl~v~F~eng-d-viTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQG-IFEKREKKFVLCVTFLENG-D-VITGDSGGNILIWSKGT 276 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEee-ccccccceEEEEEEEcCCC-C-EEeecCCceEEEEeCCC
Confidence 4567889999988766655567999999887543222221 23333 3569999998764 3 67999999999999977
Q ss_pred Ceeeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc---eeeeeEEecCC-------------
Q 022716 99 GKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY---EVNEIAWNMTG------------- 161 (293)
Q Consensus 99 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~---~~~~v~~~~~~------------- 161 (293)
.+..+.. .+.+.+.++..-.+|+.|- |+.|..|..|| .+.+..+..+.+. .++.+.=...+
T Consensus 277 ~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 277 NRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred ceEEeEeeecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 7655543 3566777888888887665 99999999999 4444444443321 12222211111
Q ss_pred -----CEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcE
Q 022716 162 -----EMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI 236 (293)
Q Consensus 162 -----~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i 236 (293)
-......+.....-++.+|+...+++++.|+.+++|+ +. +..- -+....+..++.|+|.| .+|.|...|.-
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~-k~~w-t~~~~d~~~~~~fhpsg-~va~Gt~~G~w 430 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH-KLEW-TKIIEDPAECADFHPSG-VVAVGTATGRW 430 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CC-ceeE-EEEecCceeEeeccCcc-eEEEeeccceE
Confidence 0111122233566789999999999999999999999 22 2221 23456789999999999 99999999999
Q ss_pred EEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 237 DISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 237 ~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
.+.|.++...+..-....+++.++|+|+|++||.|+.|..+|+
T Consensus 431 ~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyi 473 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYI 473 (626)
T ss_pred EEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEE
Confidence 9999999776655555778999999999999999999988876
No 143
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=3.9e-20 Score=149.14 Aligned_cols=232 Identities=19% Similarity=0.332 Sum_probs=171.1
Q ss_pred eeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCc---eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 14 REYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
..+.||+++|..++|+|- ++.|||||.|-+|+||++-.+.... .....|.+|...|.-+.|+|.-.+.|+|++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 346799999999999985 4678999999999999986543221 123568899999999999999888999999999
Q ss_pred eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
+|.+||+.+++.+..+.+...+.++.|+.||.++++.+.|..|++||.+..+.+.+.......
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~----------------- 217 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA----------------- 217 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC-----------------
Confidence 999999999998887778888999999999999999999999999999998877654211110
Q ss_pred CCCEEEEEECCCCCEEEEec---CCCcEEEEeCCCCEEEEEeeccC--CCeeEEEEccCCCEEEEe-cCCCcEEEEEcCC
Q 022716 170 NAGCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYIASA-SEDLFIDISNVHT 243 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs---~d~~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~ 243 (293)
...-+.|-.++.++.+|- ++..+-|||..+.+..-.+...+ +.|.-=-|.|+...+..+ -.|+.|+.|.+..
T Consensus 218 --k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 218 --KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred --CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 011122334555555553 47789999987654443333322 234433467888887555 4899999999866
Q ss_pred CCE-E---EEEecCCCcceeEECCC
Q 022716 244 GRT-V---HQIPCRAAMNSVEWNPK 264 (293)
Q Consensus 244 ~~~-~---~~~~~~~~i~~~~~sp~ 264 (293)
... + ..+....+-+.+.|-|+
T Consensus 296 d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 296 EPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred CCceeEEecccccCCcccccccccc
Confidence 442 2 23445566777777774
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.3e-19 Score=153.45 Aligned_cols=245 Identities=17% Similarity=0.266 Sum_probs=185.9
Q ss_pred eeecCcc-ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 14 REYTGHK-KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
..+.|+. ..|.+|+|. ++.+|.+.+-+|.|.-||+... ..........+.|++++.+|.+ ..++-|+.||.+.
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l----k~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~ 135 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL----KQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLY 135 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC----ceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEE
Confidence 4455665 689999999 5668889999999999999742 1223344556789999999975 5677788999777
Q ss_pred EEeCCCCeeeeeee---ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-----ccceeeeeEEecCCCEE
Q 022716 93 LWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 93 vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~ 164 (293)
..+...+....... ..+.+.++.|+|++..++.|+.||.|++||......++... .+..-..++|
T Consensus 136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW------- 208 (691)
T KOG2048|consen 136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW------- 208 (691)
T ss_pred EEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE-------
Confidence 77777776544322 34778899999999999999999999999998877665221 1111223334
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~ 244 (293)
++.+-. ...+++|++.|+|.+||...+..++++.-|...|.+++.++++.++++++.|+.|.-+...+.
T Consensus 209 ----------Sv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 209 ----------SVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred ----------EEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 455543 446899999999999999999999999999999999999999999999999999988887665
Q ss_pred CE--EE---EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716 245 RT--VH---QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV 284 (293)
Q Consensus 245 ~~--~~---~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~ 284 (293)
+. +. ...+...+++++..++ .+.+||.|..+++-...-
T Consensus 278 ~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 278 KSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred ccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 33 11 1223446888888776 889999998777654443
No 145
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.9e-20 Score=152.80 Aligned_cols=207 Identities=20% Similarity=0.368 Sum_probs=157.8
Q ss_pred cCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 17 TGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
.+|+..|.+|+|+..- +.|||||.|.+|++||++... ....+..|.+.|.++.|+|..+..|++|+.|++|.+.|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~----p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK----PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC----cceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 4799999999999765 578999999999999998532 22345678999999999999889999999999999999
Q ss_pred CCCC-eeeeeeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 96 ARSG-KCSQQAELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 96 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
.+.. .....+.+.+.+-.++|.|... .+++++.||+++-+|+|+.. ...+.+..|+++|
T Consensus 316 ~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------------------~~vwt~~AHd~~I 376 (463)
T KOG0270|consen 316 CRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------------------KPVWTLKAHDDEI 376 (463)
T ss_pred ccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-------------------CceeEEEeccCCc
Confidence 9843 3344567788888999988654 67777789999999999752 1223345677888
Q ss_pred EEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccC---CCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEE
Q 022716 174 YCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLE---WPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTV 247 (293)
Q Consensus 174 ~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~---~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~ 247 (293)
.+|++++.- .++++++.|+.+++|++..-.. +....|. ....+.++.|+-. ++|.|+..+.+++||+.+...+
T Consensus 377 Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 377 SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 899988764 6789999999999999854321 1112222 2345556666644 5788888899999999876543
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=5.6e-20 Score=145.01 Aligned_cols=253 Identities=16% Similarity=0.289 Sum_probs=178.5
Q ss_pred CccccEEEEEECCC----CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 18 GHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 18 ~h~~~v~~l~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
.|......++|+.+ ..+||.||.-|.|||.|+.... ....+.+|-..|+.+.++|...++++|+|.|..||+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL 162 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh----hccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence 35667788888764 3478999999999999987532 223578999999999999998999999999999999
Q ss_pred EeCCCCeeeeeee----ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE---
Q 022716 94 WDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL--- 166 (293)
Q Consensus 94 wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 166 (293)
|++++..|+..+. +..++.++.|+++|.++++++-|..+++|++...+-....+. .+.|++.+...-+
T Consensus 163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~-----s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL-----SITYSPNKTTRPFPTP 237 (385)
T ss_pred EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh-----hcccCCCCccCcCCcc
Confidence 9999999987653 456788999999999999999999999999985432211111 0223332221000
Q ss_pred ----------ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-CEE-------------EEEeeccCCCeeEEEE--
Q 022716 167 ----------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLC-------------VRTFTKLEWPVRTISF-- 220 (293)
Q Consensus 167 ----------~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-~~~-------------~~~~~~~~~~v~~l~~-- 220 (293)
.-|...+-|+.| -|.++++=+-++.|..|..-+ .+. +..+.-....+.-+.|
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred ccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 011112222222 267889999999999998721 111 1112112223444544
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCCEE--EEE---ecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 221 SHTGDYIASASEDLFIDISNVHTGRTV--HQI---PCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 221 sp~~~~l~s~s~d~~i~iw~~~~~~~~--~~~---~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.|-++.||.|...|.+++||+...... .++ .....|+..+||.++..|+...+|+.+|-||
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 566899999999999999999865432 222 2345689999999999999999998777554
No 147
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.7e-19 Score=142.57 Aligned_cols=274 Identities=16% Similarity=0.215 Sum_probs=191.1
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
.+.+.+.+|.+-|.++.||.++++||+|+.|-.+++|.++.-- .+....+.-..|...|.++.|+.. ..++++|+.
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~ 125 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGER 125 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCC
Confidence 4455667999999999999999999999999999999986321 112222233346678999999865 568999999
Q ss_pred CCeEEEEeCCCCeeeeeeeec---CceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-e---eeeecccceeeeeEEecC
Q 022716 88 DKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFK-P---IHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-~---~~~~~~~~~~~~v~~~~~ 160 (293)
+++|.+-|+.+.+.+..+... +.++.+..+|-.+.+++.+.++.+.+||.+... + ......+.....+.|+|.
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999999998877766544 478889999999999999999999999998644 2 222223444555666666
Q ss_pred CCEEEEecCCC-----------------------------CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc
Q 022716 161 GEMFFLTTGNA-----------------------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 211 (293)
Q Consensus 161 ~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~ 211 (293)
.+.+++..... ....+-|+|.|+.+++--....-.+||+-..++.---..|
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 55444433210 0123567777777776655556667776654332211111
Q ss_pred C-------CCeeEEEEccCCCEEEEecCCCcEEEEEcCC-----C-----C---------E----EEEE-ecCCCcceeE
Q 022716 212 E-------WPVRTISFSHTGDYIASASEDLFIDISNVHT-----G-----R---------T----VHQI-PCRAAMNSVE 260 (293)
Q Consensus 212 ~-------~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~-----~-----~---------~----~~~~-~~~~~i~~~~ 260 (293)
. ..+.+++|.-+.. +++||.+--|++|.+.. | + . +..+ .+++-++.|.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 1 2477788876654 99999999999998642 1 1 0 1122 2444568899
Q ss_pred ECCCCCeEEEEEcCCCCCCCCcceEE
Q 022716 261 WNPKYNLLAYAGDDKNKYQADEGVFR 286 (293)
Q Consensus 261 ~sp~~~~la~~~~d~~~~~~~~~~~~ 286 (293)
|+|..++|++.|-.+.+++|..+..-
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred ecCCcceEeccchhhheeccccccCC
Confidence 99999999999988877777765543
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6e-19 Score=138.62 Aligned_cols=246 Identities=18% Similarity=0.334 Sum_probs=175.1
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|..+|++++||+||+.|+|+|.|..|++||+.... ....+.+ ..+|....|+|...+.++..-.+..-
T Consensus 57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~rirf---~spv~~~q~hp~k~n~~va~~~~~sp 131 (405)
T KOG1273|consen 57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRIRF---DSPVWGAQWHPRKRNKCVATIMEESP 131 (405)
T ss_pred hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEEEc---cCccceeeeccccCCeEEEEEecCCc
Confidence 356789999999999999999999999999999999997542 3333333 57899999999877666555555555
Q ss_pred EEEeCCCCeeeeeeee------cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 92 RLWDARSGKCSQQAEL------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
.+-++..+.... +.. .....+..|.+.|+++++|...|.+.++|..+.+.+...+..
T Consensus 132 ~vi~~s~~~h~~-Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit---------------- 194 (405)
T KOG1273|consen 132 VVIDFSDPKHSV-LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT---------------- 194 (405)
T ss_pred EEEEecCCceee-ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec----------------
Confidence 555554322111 111 111123458899999999999999999999887655432211
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-------EE--EEEeec--cCCCeeEEEEccCCCEEEEec-CC
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-------LC--VRTFTK--LEWPVRTISFSHTGDYIASAS-ED 233 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-------~~--~~~~~~--~~~~v~~l~~sp~~~~l~s~s-~d 233 (293)
+ ...+..+-++-.|++++.-+.|+.|+.|+++.- +. .+++.. ..-+...++|+.+|.|++.++ ..
T Consensus 195 --s-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~a 271 (405)
T KOG1273|consen 195 --S-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARA 271 (405)
T ss_pred --h-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccc
Confidence 0 123556778889999999999999999997631 11 111111 233567899999999998877 44
Q ss_pred CcEEEEEcCCCCEEEEEec-C-CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 234 LFIDISNVHTGRTVHQIPC-R-AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 234 ~~i~iw~~~~~~~~~~~~~-~-~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
..++||....|.+++.+.. + .....+.|+|--..+++-. .|++.||..+
T Consensus 272 HaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~---------sg~v~iw~~~ 322 (405)
T KOG1273|consen 272 HALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA---------SGVVYIWAVV 322 (405)
T ss_pred eeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc---------CCceEEEEee
Confidence 5699999999999988754 2 3577899999877777762 3567777653
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=1.5e-18 Score=136.83 Aligned_cols=247 Identities=21% Similarity=0.354 Sum_probs=170.9
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC----Cc----eeEEEeeCCc-CCeeEEEEc-------CCCCCEEEEE
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH----GK----VKDIELRGHA-DSVDQLCWD-------PKHADLIATA 85 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~----~~----~~~~~~~~h~-~~i~~~~~~-------~~~~~~l~s~ 85 (293)
-...+.|+|||..|++-+.|..+++|++....- .. .....++-.. ..|..-+|- |+ ..++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeec
Confidence 456789999999999999999999998843210 00 0111111111 235555553 33 4688888
Q ss_pred eCCCeEEEEeCCCCeeeeeeeecC------ceEEEEEcCCCCEEEEEeCCCeEEEEEc-cccceeeeecccceeeeeEEe
Q 022716 86 SGDKTVRLWDARSGKCSQQAELSG------ENINITYKPDGTHIAVGNRDDELTILDV-RKFKPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~d~~i~l~d~-~~~~~~~~~~~~~~~~~v~~~ 158 (293)
+.|.-|++||.-+|+....+..-. ...+++|+|||.+|++|. .+.|+++|+ |...-.. +......
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~-------vy~t~~~ 201 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCP-------VYTTVTK 201 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCc-------chhhhhc
Confidence 999999999999998665443221 245899999999999986 678999998 4332111 1000000
Q ss_pred cCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec-CCCcE
Q 022716 159 MTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLFI 236 (293)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~d~~i 236 (293)
++ ....+-+.|++++|... .+++|+--..+-||.-..+.++..+-+|.+.|+.++|.++|+.|.+|+ .|-.|
T Consensus 202 --~k----~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 202 --GK----FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred --cc----ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 00 01123356899999875 899999999999999888888888889999999999999999999998 57889
Q ss_pred EEEEcCCCC-EEEEEecCCC-cc-ee--EECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 237 DISNVHTGR-TVHQIPCRAA-MN-SV--EWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 237 ~iw~~~~~~-~~~~~~~~~~-i~-~~--~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
-.||++..+ .+..+.-+.. .| .| ...|++++||+|+.|+ .+++|++.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG--------~V~vwdlk 327 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG--------SVRVWDLK 327 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc--------cEEEEecC
Confidence 999998654 3333322111 11 23 4579999999999885 56666553
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=2.3e-19 Score=153.50 Aligned_cols=240 Identities=19% Similarity=0.305 Sum_probs=173.3
Q ss_pred ccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 9 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
.+...+.++||++.|.|++|+.||+++|+|+.|+.|.+|+-.-. +. + --.|.+.|.++.|+|-. ..|+|++-.
T Consensus 42 dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE--G~---L-kYSH~D~IQCMsFNP~~-h~LasCsLs 114 (1081)
T KOG1538|consen 42 DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE--GI---L-KYSHNDAIQCMSFNPIT-HQLASCSLS 114 (1081)
T ss_pred CcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc--ce---e-eeccCCeeeEeecCchH-HHhhhcchh
Confidence 34456789999999999999999999999999999999975321 11 1 23699999999999974 567777653
Q ss_pred CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
..-+|..... .+........+.+++|..||.+++.|..+|+|.+-+-.......... ...
T Consensus 115 -dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R------------------pgg 174 (1081)
T KOG1538|consen 115 -DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER------------------PGG 174 (1081)
T ss_pred -hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC------------------CCC
Confidence 2457865432 22223344567789999999999999999999876422111111101 111
Q ss_pred CCCCEEEEEECCC-----CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 169 GNAGCYCIAIDPM-----GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 169 ~~~~~~~~~~~~~-----~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
.+.++.+++++|. ...+++.....++.+|.+. |..+..-+.......++++.|+|.++..|+.|+.+.++.- .
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~ 252 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-D 252 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-c
Confidence 2345555666554 3467888888888888764 4445544566778899999999999999999999999965 4
Q ss_pred CCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCC
Q 022716 244 GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNK 277 (293)
Q Consensus 244 ~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~ 277 (293)
|-.+.++. ....|..+..+|+++..+.|..|+.+
T Consensus 253 GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 253 GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred CeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence 44444443 45679999999999999999988643
No 151
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.3e-19 Score=138.71 Aligned_cols=213 Identities=18% Similarity=0.272 Sum_probs=151.1
Q ss_pred EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe-----eeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEE
Q 022716 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-----CSQQAELSGENINITYKPDGTHIAVGN-RDDELTI 134 (293)
Q Consensus 61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l 134 (293)
.+++|.+.|++++|+.+ +..|+|++.|+.|++|+++.-. +++.----++++.++|.||-+.+++.. ..+++++
T Consensus 81 ~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 47899999999999976 5789999999999999987542 222111124778899999988766554 5668888
Q ss_pred EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC
Q 022716 135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP 214 (293)
Q Consensus 135 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~ 214 (293)
|-+...+.- +..-..+-|+ .+.+-.-+...+..+-+-..+.++++++.|..|.||+++ ++.+..+......
T Consensus 160 yk~~K~~dG-----~~~~~~v~~D---~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 160 YKLVKKTDG-----SGSHHFVHID---NLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred EEeeecccC-----CCCccccccc---ccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 876543210 1111122222 111222234455666677788999999999999999998 7777777666666
Q ss_pred eeEEEEccCCCEEEEecCCCcEEEEEcC---CCC--E-EEE--E-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716 215 VRTISFSHTGDYIASASEDLFIDISNVH---TGR--T-VHQ--I-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 283 (293)
Q Consensus 215 v~~l~~sp~~~~l~s~s~d~~i~iw~~~---~~~--~-~~~--~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~ 283 (293)
-...+.||+|+++++++=--.+++|.+- +|. . .+. + .+...|.+++|||+..++++.|.|+.+++|+..
T Consensus 231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 6778899999999999987889999763 231 1 222 2 345679999999999999999999766655543
No 152
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.6e-19 Score=150.46 Aligned_cols=218 Identities=20% Similarity=0.322 Sum_probs=169.9
Q ss_pred eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCE--EEEEeCCCeEEEE
Q 022716 58 KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH--IAVGNRDDELTIL 135 (293)
Q Consensus 58 ~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~d~~i~l~ 135 (293)
....+.||++.|.+++..|. +..|++|+.||+|+||.+.+++|+..+.+.+.+.+++|.|.+.. |+++.. ..+.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEec-CceEEe
Confidence 34567899999999999996 57999999999999999999999999999999999999997753 444333 334444
Q ss_pred Ecccc---------ce-----------------------------eeeecccceeeeeEEecCCCEEEEecCC-------
Q 022716 136 DVRKF---------KP-----------------------------IHRRKFGYEVNEIAWNMTGEMFFLTTGN------- 170 (293)
Q Consensus 136 d~~~~---------~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~------- 170 (293)
+..-+ .+ .-.+++...++.+.|+-.|..+...+..
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32100 00 0112344567888899888877655442
Q ss_pred -----------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC
Q 022716 171 -----------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 233 (293)
Q Consensus 171 -----------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d 233 (293)
+.+.++.|+|...+|++++ ...|+|||+.+++.++++......|..++.+|.|..|+.|+.|
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 3467889999999888887 4579999998887777777777789999999999999999999
Q ss_pred CcEEEEEcCCCCEE-EEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 234 LFIDISNVHTGRTV-HQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 234 ~~i~iw~~~~~~~~-~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
+.+..+|+.-..+. +.+. +...+++|+||+..++||+|++|+.+.
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 99999999876443 3343 455799999999999999999997655
No 153
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=1.3e-18 Score=135.40 Aligned_cols=240 Identities=18% Similarity=0.264 Sum_probs=170.1
Q ss_pred cCccccEEEEEECCCCC-----eEEEEeCCCcEEEeecCCCCCCceeEEEe-----eCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 17 TGHKKKVHSVAWNCTGT-----KLASGSVDQTARVWHIEPHGHGKVKDIEL-----RGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~-----~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-----~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
..|.-+++.+.|.|+.. .|||.+ ..+|+|.+............+ ..+.+++++..|+..+.+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 47888999999999873 455554 689999987432221111112 234578999999988889999999
Q ss_pred CCCeEEEEeCCCCee----eeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716 87 GDKTVRLWDARSGKC----SQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (293)
-|-+..|||+.++.. .+.+.+..++..++|...+ ..+++.+.||.++++|+|...-..- .+.. |
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~--------p-- 239 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYED--------P-- 239 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-EecC--------C--
Confidence 999999999988732 2234456778899998755 4678899999999999987542110 0000 0
Q ss_pred CEEEEecCCCCEEEEEECCCC-CEEEEecCC-CcEEEEeCCC-CEEEEEeeccCCCeeEEEEccC-CCEEEEecCCCcEE
Q 022716 162 EMFFLTTGNAGCYCIAIDPMG-RYFAVGSAD-SLVSLWDISE-MLCVRTFTKLEWPVRTISFSHT-GDYIASASEDLFID 237 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d-~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~d~~i~ 237 (293)
....+..-+++++.. +++|+-..| ..|.|.|++. ...+..+.+|...|+.++|.|. ...++||++|..+-
T Consensus 240 ------~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qal 313 (364)
T KOG0290|consen 240 ------SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQAL 313 (364)
T ss_pred ------CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEE
Confidence 001233345555543 566666554 4589999974 5567788999999999999996 56899999999999
Q ss_pred EEEcCCCC------EEEEEecCCCcceeEECC-CCCeEEEEEcCC
Q 022716 238 ISNVHTGR------TVHQIPCRAAMNSVEWNP-KYNLLAYAGDDK 275 (293)
Q Consensus 238 iw~~~~~~------~~~~~~~~~~i~~~~~sp-~~~~la~~~~d~ 275 (293)
|||+..-- .+..+.....|+.|.|+| ....||.+...+
T Consensus 314 iWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred EEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCe
Confidence 99997521 233445667899999997 457888887553
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=5e-19 Score=150.70 Aligned_cols=125 Identities=19% Similarity=0.342 Sum_probs=94.2
Q ss_pred eeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCce--eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 14 REYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKV--KDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~--~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
..+-+|...|+.+.|+|- +.+|||||.|-.||||.+........ ..+.+.+-+-.+-++.|+|....++++ +..|.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~ 151 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGS 151 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCce
Confidence 346789999999999984 45689999999999999863222111 122333334457899999986666655 56789
Q ss_pred EEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc
Q 022716 91 VRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRK 139 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~ 139 (293)
+.+||+.+++...... +...+.++.|+.||+.|++...|..|++||.|.
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 9999998887665544 334566889999999999999999999999764
No 155
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=4.9e-17 Score=130.37 Aligned_cols=238 Identities=18% Similarity=0.284 Sum_probs=168.4
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC--CeEEEEeCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDAR 97 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd~~ 97 (293)
...+....|+-+...|..|+.||. ++|+.++.+. ..........|--+-|+ ..+++-.+.+ ..+++.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k----~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK----CFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHH----hhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcc
Confidence 346777779988888999999986 7787764321 00000011123333443 2455444443 347888888
Q ss_pred CCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177 (293)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
....+-...+...+.++.+.. +.|+++-++. |.++|+++.+.++.+..- ..+..++.+++
T Consensus 77 k~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~-----------------~~n~~gl~AlS 136 (391)
T KOG2110|consen 77 KKTTICEIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETT-----------------PPNPKGLCALS 136 (391)
T ss_pred cCceEEEEecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhcc-----------------CCCccceEeec
Confidence 776666666777788888765 4566665544 999999998887764321 01122234455
Q ss_pred ECCCCCEEEEec--CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCc-EEEEEcCCCCEEEEEecC-
Q 022716 178 IDPMGRYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPCR- 253 (293)
Q Consensus 178 ~~~~~~~l~~gs--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~~~~~~~~~~~- 253 (293)
+++.+.++|--+ ..|.|.+||..+...+..+..|+.++.+++|+|+|.+|||+|+.|+ |+++.+.+|+++..+.-.
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~ 216 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT 216 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence 555566766543 3688999999999999999999999999999999999999999998 689999999988776422
Q ss_pred --CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeecC
Q 022716 254 --AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA 293 (293)
Q Consensus 254 --~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~~ 293 (293)
..|-+|+|+|++++|+.+|.. ++++|+-+|++
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS~T--------eTVHiFKL~~~ 250 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASSNT--------ETVHIFKLEKV 250 (391)
T ss_pred eeeEEEEEEECCCCCeEEEecCC--------CeEEEEEeccc
Confidence 257789999999999999865 67888887753
No 156
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=4e-18 Score=138.00 Aligned_cols=261 Identities=16% Similarity=0.246 Sum_probs=171.9
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCC------C------CCceeEEEeeCCcCCeeEEEEcCCCCCE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH------G------HGKVKDIELRGHADSVDQLCWDPKHADL 81 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~------~------~~~~~~~~~~~h~~~i~~~~~~~~~~~~ 81 (293)
..+.+|...|.++.|+|+|+.||||+.+|.|.+|..... . ..-.....+.+|.+.|+.++|.|+ +.+
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-~~~ 137 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-SNF 137 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-Cce
Confidence 457899999999999999999999999999999987510 0 001223457789999999999997 578
Q ss_pred EEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716 82 IATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 82 l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
+++++-|..+++||+..|....... +...+..++|.|-++++++-+.|...+.+++......+...... ...-..+..
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~-m~~~~~~~~ 216 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI-MPAKAFNER 216 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE-eeecccCCC
Confidence 9999999999999999998777654 34456679999999999999999877777765544333222100 000011111
Q ss_pred CCEEEEecCCCC----EEEEEECCCCCEEEEecC---------CCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccC---
Q 022716 161 GEMFFLTTGNAG----CYCIAIDPMGRYFAVGSA---------DSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHT--- 223 (293)
Q Consensus 161 ~~~~~~~~~~~~----~~~~~~~~~~~~l~~gs~---------d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~--- 223 (293)
.....-..++.. .--++|+|+|.++++.+. -++.++|+-+. .++...+.....+...+.|+|-
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 111111111111 113577888888887642 23344454322 1122233344455666666551
Q ss_pred --------------CCEEEEecCCCcEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcCCC
Q 022716 224 --------------GDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 224 --------------~~~l~s~s~d~~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
.+.++.-.....+++||.++...+.... +-..|+.++|+++|+.++..|.|+.
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred eccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence 1233334445678999998876654432 4568999999999999999999973
No 157
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=7.9e-19 Score=147.40 Aligned_cols=231 Identities=12% Similarity=0.203 Sum_probs=170.6
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCC---CC-CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP---HG-HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~---~~-~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
++-.|...|+.++|.|....|++|+-||++++|++.. .. ........+.+|.++|.++++.+. .+.++||+-||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCce
Confidence 4557889999999999999999999999999999932 11 112334578999999999998765 578899999999
Q ss_pred EEEEeCCCCe----------eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce--e---eeecccceeee
Q 022716 91 VRLWDARSGK----------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--I---HRRKFGYEVNE 154 (293)
Q Consensus 91 i~vwd~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~--~---~~~~~~~~~~~ 154 (293)
|+.|++.... ....+. +.+.+..+++++....|++++.||++++|+.....+ . .....+..+..
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 9999654211 111222 234455788998888999999999999999866554 1 11111111211
Q ss_pred eEEecC-------------------CCEEEEecCC-------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 155 IAWNMT-------------------GEMFFLTTGN-------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 155 v~~~~~-------------------~~~~~~~~~~-------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
..|.+. ....++.+.. ..+..+..+|...+..++..|+.|+++|..++..+.+.
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 222110 0111111111 23456788999999999999999999999999999999
Q ss_pred eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
..|...++++++-|+|.+|++++.|+.+.+|.......
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 99999999999999999999999999999998865443
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=9.6e-19 Score=145.00 Aligned_cols=218 Identities=17% Similarity=0.335 Sum_probs=167.0
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 102 (293)
-.|++......++++|+..+.|+|||+..+ .....+.+|...|+.+.++..+ .+|++++..|.|.|..+.++...
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----l~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAK----LIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHH----HHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccc
Confidence 345555556689999999999999999742 2233578999999999998764 68999999999999999887655
Q ss_pred eeeeec-CceE-EEEEcCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716 103 QQAELS-GENI-NITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID 179 (293)
Q Consensus 103 ~~~~~~-~~~~-~~~~~~~~~~-l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
..+... +..+ -+.|+|..+. |.+++.+|.+.+||.....+... +...|.+++--|+|+
T Consensus 157 t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~-------------------~~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH-------------------ASEAHSAPCRGICFS 217 (673)
T ss_pred cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc-------------------hhhhccCCcCcceec
Confidence 555543 3443 5788987765 45667789999999987665432 123355666678888
Q ss_pred CCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE-EEEE-ecCCCc
Q 022716 180 PMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT-VHQI-PCRAAM 256 (293)
Q Consensus 180 ~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~-~~~~-~~~~~i 256 (293)
|.. .++++.+.|..|++||.........+ .++-|..+++|+++|.+|+.|+..|.|..||++..+. +..+ .+...|
T Consensus 218 psne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sV 296 (673)
T KOG4378|consen 218 PSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASV 296 (673)
T ss_pred CCccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccce
Confidence 865 56888999999999999876655554 4566999999999999999999999999999987543 4444 345679
Q ss_pred ceeEECCCC
Q 022716 257 NSVEWNPKY 265 (293)
Q Consensus 257 ~~~~~sp~~ 265 (293)
.+|+|-|.-
T Consensus 297 t~vafq~s~ 305 (673)
T KOG4378|consen 297 TRVAFQPSP 305 (673)
T ss_pred eEEEeeecc
Confidence 999997653
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-19 Score=163.66 Aligned_cols=211 Identities=18% Similarity=0.254 Sum_probs=165.6
Q ss_pred ceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 13 SREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
...+.-|++.|..|.|++.+. +||+|+.||.|.|||+.....+-.. .-..-.+.|.+++|+....+.|+|++.+|.+
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~--~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP--GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC--CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 455778999999999999765 9999999999999999753221111 0112346799999998888899999999999
Q ss_pred EEEeCCCCeeeeeeeecC---ceEEEEEcCCCC-EEEEEeCCC---eEEEEEccccc-eeeeecccceeeeeEEecCCCE
Q 022716 92 RLWDARSGKCSQQAELSG---ENINITYKPDGT-HIAVGNRDD---ELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~-~l~~~~~d~---~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
.|||++..+.+-.+.... ....++|+|+.. .+++++.|. .|.+||+|... +++
T Consensus 187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k------------------- 247 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK------------------- 247 (1049)
T ss_pred eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh-------------------
Confidence 999999876544433222 245789999864 667776554 68999998643 222
Q ss_pred EEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEc
Q 022716 164 FFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNV 241 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~ 241 (293)
.+..|+.++.++.|.+.+ .++++++.|+.|.+|+.++++.+.++..-.+++..+.|+|... .++.++-||.|.|+++
T Consensus 248 -~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 248 -ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred -hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 124566778888888877 8899999999999999999999999988778999999999876 7888899999999998
Q ss_pred CCCC
Q 022716 242 HTGR 245 (293)
Q Consensus 242 ~~~~ 245 (293)
..+.
T Consensus 327 ~~~~ 330 (1049)
T KOG0307|consen 327 QGTD 330 (1049)
T ss_pred ecCC
Confidence 7654
No 160
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=1.6e-16 Score=134.40 Aligned_cols=238 Identities=15% Similarity=0.154 Sum_probs=152.2
Q ss_pred ccccEEEEEECCCCCeEEEE-eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe-CCCeEEEEeC
Q 022716 19 HKKKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS-GDKTVRLWDA 96 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~-~d~~i~vwd~ 96 (293)
+.+....++++|++++|+.+ ..++.|.+|+++... ................+.++|++. .+++++ .++.|.+|++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~~~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~ 109 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAESPLPGSPTHISTDHQGR-FLFSASYNANCVSVSPL 109 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeeecCCCCceEEEECCCCC-EEEEEEcCCCeEEEEEE
Confidence 34567889999999998665 458999999997322 221111111222356788999764 555554 4899999998
Q ss_pred CCC-e---eeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 97 RSG-K---CSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 97 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
+.. . ..........+..++++|+++++++.. .++.|.+||+++...+.... ... ... ....
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~------------~~~-~~g~ 175 (330)
T PRK11028 110 DKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAE------------VTT-VEGA 175 (330)
T ss_pred CCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCc------------eec-CCCC
Confidence 642 2 122222223456788999999886655 56999999997633221000 000 000 0112
Q ss_pred CEEEEEECCCCCEEEEecC-CCcEEEEeCCC--C--EEEEEeeccC------CCeeEEEEccCCCEEEEec-CCCcEEEE
Q 022716 172 GCYCIAIDPMGRYFAVGSA-DSLVSLWDISE--M--LCVRTFTKLE------WPVRTISFSHTGDYIASAS-EDLFIDIS 239 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~--~--~~~~~~~~~~------~~v~~l~~sp~~~~l~s~s-~d~~i~iw 239 (293)
....++|+|+++++.+++. +++|.+|+++. + +.+.++.... .....+.|+|+|++|+++. .++.|.+|
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~ 255 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVF 255 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence 2446889999999877776 89999999863 2 3333332211 1234688999999998875 47899999
Q ss_pred EcCCCC-E---EEEEecCCCcceeEECCCCCeEEEEEc
Q 022716 240 NVHTGR-T---VHQIPCRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 240 ~~~~~~-~---~~~~~~~~~i~~~~~sp~~~~la~~~~ 273 (293)
++.... . +.........+.+.|+|+|++|++++.
T Consensus 256 ~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 256 SVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 986432 2 233333345678999999999998875
No 161
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=8.8e-19 Score=142.47 Aligned_cols=199 Identities=21% Similarity=0.324 Sum_probs=145.4
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeee
Q 022716 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (293)
Q Consensus 24 ~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 103 (293)
.+++|+.+|..|++|+.||++|+|+..+. ........|.+.|.++.|+|+ +.+|++.+.| ..+||+.+++.++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~~eV~DL~FS~d-gk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHHAEVKDLDFSPD-GKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc----hhhhhhHhhcCccccceeCCC-CcEEEEecCC-ceEEEEeccCchhh
Confidence 78999999999999999999999996532 122356689999999999997 5789999999 99999999996555
Q ss_pred eee-e--cCceEEEEEcCCC---CEEEEE-e-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 104 QAE-L--SGENINITYKPDG---THIAVG-N-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 104 ~~~-~--~~~~~~~~~~~~~---~~l~~~-~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
... . ......|.|..|+ .+.+.. . ..+.+..+|+..... +.-....-.......+.+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~---------------~~~l~~~~~~~~~~siSs 286 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG---------------SNFLRLRKKIKRFKSISS 286 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc---------------ccccchhhhhhccCccee
Confidence 433 1 1223357787665 222222 2 234555555432110 000011112233456889
Q ss_pred EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
++++++|+++|.|+.||.|-|++..+.++++-. +.|...|+.+.|+|+.+++++-+.|..+.+..+.-
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999999999988777654 45888999999999999999999999888877643
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=148.32 Aligned_cols=254 Identities=17% Similarity=0.254 Sum_probs=163.4
Q ss_pred EEECCC---CCeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 26 VAWNCT---GTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 26 l~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
..|++. .+.|+.+..||.|.++|....... .........|.+.|.++.|.| +..+|++++.|.++++||++.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccce
Confidence 566543 356899999999999997643211 112235678999999999999 67789999999999999999988
Q ss_pred eeee---eeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeeccccee----eeeEEecCCCE---E-EEec
Q 022716 101 CSQQ---AELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEV----NEIAWNMTGEM---F-FLTT 168 (293)
Q Consensus 101 ~~~~---~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~----~~v~~~~~~~~---~-~~~~ 168 (293)
+... +.+.+.+.+++|.|.. ..+++|+.||.+.|||++-...-....+...+ +.-- .|...+ . .-..
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLKKRIRKWKA 212 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCchhhcccccccc
Confidence 7654 3455667788998855 56888999999999999754311110000000 0000 000000 0 0001
Q ss_pred CCCCEEE---EEECCCCCEEEEecC-CCcEEEEeCCCCEEEEE--------eecc---CCCeeEEEEccCCCEEEEecCC
Q 022716 169 GNAGCYC---IAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRT--------FTKL---EWPVRTISFSHTGDYIASASED 233 (293)
Q Consensus 169 ~~~~~~~---~~~~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~--------~~~~---~~~v~~l~~sp~~~~l~s~s~d 233 (293)
....+.. +.+..|...||+++. |+.|++||+++...... +..+ .-.+.++.....|.+|.....|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 1112222 444567788888887 99999999987543322 1122 1246666666778888766679
Q ss_pred CcEEEEEcCCCCE--EEEEec--CCCc-ceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 234 LFIDISNVHTGRT--VHQIPC--RAAM-NSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 234 ~~i~iw~~~~~~~--~~~~~~--~~~i-~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
+.|++|++.+... +..+.+ ...+ ..-..+|++.++++|+.|...|+|.
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 9999999976532 111111 1111 2345789999999999998877654
No 163
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=1.4e-18 Score=149.78 Aligned_cols=208 Identities=17% Similarity=0.228 Sum_probs=165.2
Q ss_pred ecCccccEEEEEECCC---CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeE
Q 022716 16 YTGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV 91 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i 91 (293)
...|.+.|.||.||.. .++||+|+.|.-|++||+..+- .....+-+|...|+++.|...+ ....+|++.|+.|
T Consensus 497 ~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny---~l~qtld~HSssITsvKFa~~gln~~MiscGADksi 573 (1080)
T KOG1408|consen 497 MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY---DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSI 573 (1080)
T ss_pred eecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc---chhhhhcccccceeEEEEeecCCceEEEeccCchhh
Confidence 3589999999999853 3689999999999999997432 2223577899999999997654 3468899999887
Q ss_pred EEEeCCC---Ceeee-ee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 92 RLWDARS---GKCSQ-QA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 92 ~vwd~~~---~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
.+--.+. +.... .. -.+...+.|+..|..+++++++.|..|++||+.+.+..+..+-..
T Consensus 574 mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~--------------- 638 (1080)
T KOG1408|consen 574 MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR--------------- 638 (1080)
T ss_pred heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc---------------
Confidence 5432221 11111 00 112334578999999999999999999999999988766554221
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
.+++....+..+|.|.|+|+...|+++.++|.-+++++....+|...|+.+.|.+|.+.|.+.+.||.|.||.+..
T Consensus 639 --~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 639 --DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 2345567788899999999999999999999999999999999999999999999999999999999999998753
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=6.4e-18 Score=133.32 Aligned_cols=232 Identities=19% Similarity=0.280 Sum_probs=164.0
Q ss_pred cccEEEEEEC-------CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC---eeEEEEcCCCCCEEEEEeCCC
Q 022716 20 KKKVHSVAWN-------CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS---VDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 20 ~~~v~~l~~s-------~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~---i~~~~~~~~~~~~l~s~~~d~ 89 (293)
...|....|- |+.+++|+.+.|.-|++||........ +..--.|.+. -.+++|+|++. .|+ ++...
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykr 179 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKR 179 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCC-eEe-ecccc
Confidence 4566666664 678899999999999999987542211 1111234433 34789999865 554 57889
Q ss_pred eEEEEeC-CCCeeee--eee------ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716 90 TVRLWDA-RSGKCSQ--QAE------LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM 159 (293)
Q Consensus 90 ~i~vwd~-~~~~~~~--~~~------~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~ 159 (293)
.|+++|+ +.|+--. ... ..+-..+++|+|-. +.+++|+...++-|+.-....|
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----------------- 242 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----------------- 242 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-----------------
Confidence 9999998 6664211 111 12334568899854 5788888887777766433333
Q ss_pred CCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCCCC-EEEEEeeccCC-CeeEEE--EccCCCEEEEecCCC
Q 022716 160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEM-LCVRTFTKLEW-PVRTIS--FSHTGDYIASASEDL 234 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~-~~~~~~~~~~~-~v~~l~--~sp~~~~l~s~s~d~ 234 (293)
+..+..+.+.|+-+.|.++|+.|.+|+. |-.|..||++.. .++..+..|.. .=.-|- ..|++++||+|+.||
T Consensus 243 ---l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 243 ---LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred ---eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence 3444567788899999999999999876 678999999864 34555666654 222343 458999999999999
Q ss_pred cEEEEEcCC-CCEEEEEe-cCCCcceeEECCCCCeEEEEEcCC
Q 022716 235 FIDISNVHT-GRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 235 ~i~iw~~~~-~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.|++||.++ +..+..++ +...+|.++++|-..++|+++..+
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 999999998 66566554 456799999999999999998543
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=6.4e-16 Score=133.57 Aligned_cols=242 Identities=29% Similarity=0.446 Sum_probs=179.5
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEE-cCCCCCEEEEEeC-CCeE
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCW-DPKHADLIATASG-DKTV 91 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~-~~~~~~~l~s~~~-d~~i 91 (293)
.+.+|...+.++.|.+.+..++.++.|+.+.+|+..... .....+.++. ..+..+.+ .++....++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 456899999999999999999999999999999987532 1222333433 35666666 6654434555455 9999
Q ss_pred EEEeCCC-Ceeeeeeee-cCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 92 RLWDARS-GKCSQQAEL-SGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 92 ~vwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
.+||... ......... ...+..+.|+|++..++.++. |+.+.+|+++....... +..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 196 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST--------------------LAG 196 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe--------------------ecc
Confidence 9999987 444444443 345567999999998888886 99999999876332221 122
Q ss_pred CCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 169 GNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
+...+.+++++|++. .+++++.|+.|++||...+.... .+..|.... ...|+|++.++++++.|+.+++|+......
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 456778899999998 55555999999999988777776 577777665 448999999999999999999999987654
Q ss_pred -EEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716 247 -VHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 247 -~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
+..+ .+...+.++.|+|++..+++++.|+.+.+|
T Consensus 276 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~ 311 (466)
T COG2319 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311 (466)
T ss_pred EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 3333 345689999999988888888777433333
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.5e-17 Score=135.43 Aligned_cols=222 Identities=14% Similarity=0.220 Sum_probs=172.5
Q ss_pred CccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
--+.+|.+++|.|+|. .+++++.......||+......... ...++. ..+.....+|+ +.+|+..|..|.|.+.-
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~--~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK--PPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLH 331 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeecccccccccc--CCCCcccchhheeEecCC-CCeEEEcccCceEEeeh
Confidence 3467999999999999 8999999999999999753222211 223443 34566677776 46899999999999999
Q ss_pred CCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccccee--eeeEEecCCCEEEEecCC---
Q 022716 96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV--NEIAWNMTGEMFFLTTGN--- 170 (293)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~--- 170 (293)
..+++.+..+...+.+..+.|+.+++.|++++.+|.|.+||++....+++......+ ..++-++.+.++...+..
T Consensus 332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 332 AKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred hhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence 999999999999999999999999999999999999999999998887776544333 334444555544433322
Q ss_pred ------------------------CCEEEEEECCCCCEEEEecC--CCcEEEEeCCCCEEEEEeecc---CCCeeEEEEc
Q 022716 171 ------------------------AGCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRTFTKL---EWPVRTISFS 221 (293)
Q Consensus 171 ------------------------~~~~~~~~~~~~~~l~~gs~--d~~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s 221 (293)
..|.++.|+|+..+||.+|. ++.+++-.+.+......+... -..|++++||
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS 491 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS 491 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec
Confidence 23678999999999888765 678999999887665555432 2469999999
Q ss_pred cCCCEEEEecCCCcEEEEEcC
Q 022716 222 HTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 222 p~~~~l~s~s~d~~i~iw~~~ 242 (293)
|.|.+||.|..+|.+.+|.++
T Consensus 492 P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 492 PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCceEEeecCCCceeeEeec
Confidence 999999999999999999764
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=4.3e-18 Score=141.16 Aligned_cols=235 Identities=16% Similarity=0.239 Sum_probs=170.5
Q ss_pred cEEEEEECCCCCeEEEE--eCCCcEEEeecCCCCCCceeEE-EeeCCcCC-eeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 22 KVHSVAWNCTGTKLASG--SVDQTARVWHIEPHGHGKVKDI-ELRGHADS-VDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~~-~~~~h~~~-i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
.+.++.|+.... |+++ +.|..+++|.-... .+.+... .+.+.... |.+..+ +-++++|+..+.|+|||++
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~----S~y~~sgG~~~~Vkiwdl~ 109 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQ----SLYEISGGQSGCVKIWDLR 109 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCC-CCccceeeccccchHHHHhhhhc----ceeeeccCcCceeeehhhH
Confidence 388888887653 5444 55889999975532 2222222 22333222 333322 3578999999999999998
Q ss_pred CCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 98 SGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 98 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
...+.+... +...+.++.+...+.++++++-.|.|.+..+.++........+. + ..+--+
T Consensus 110 ~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s----------g---------qsvRll 170 (673)
T KOG4378|consen 110 AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS----------G---------QSVRLL 170 (673)
T ss_pred HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC----------C---------CeEEEe
Confidence 655544443 44567889999889999999999999999987765444333221 1 112246
Q ss_pred EECCCCCE-EEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716 177 AIDPMGRY-FAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQIPCR 253 (293)
Q Consensus 177 ~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~ 253 (293)
.++|..++ |.+++.+|.|.+||+..+.+... .+.|..|-..|+|+|.+. +||+.+.|..|++||....+....+...
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence 67777654 67789999999999987665544 356888999999999875 6799999999999999988878888888
Q ss_pred CCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 254 AAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 254 ~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.|...++|+|+|.+|+.|...+.++..|
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEe
Confidence 8999999999999999999876655543
No 168
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=5.8e-17 Score=139.26 Aligned_cols=266 Identities=17% Similarity=0.209 Sum_probs=171.3
Q ss_pred cccccceeecCccccEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEE
Q 022716 8 FKNLHSREYTGHKKKVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT 84 (293)
Q Consensus 8 ~~~~~~~~~~~h~~~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s 84 (293)
++........||.++|+|+.|-|+.. ++++|+.||.|++|.+..+. ......+.+|...+.++.-. .....+
T Consensus 42 ~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~--~~~i~~~~g~~~~~~cv~a~---~~~~~~ 116 (764)
T KOG1063|consen 42 EKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEY--LIKIYTIQGHCKECVCVVAR---SSVMTC 116 (764)
T ss_pred ccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehh--eEEEEeecCcceeEEEEEee---eeEEEe
Confidence 33344556789999999999999887 89999999999999997432 23334566677776666432 223333
Q ss_pred EeCCCeEEEEeCCCCe--eeeeee----------------------------------------------ecCc---eEE
Q 022716 85 ASGDKTVRLWDARSGK--CSQQAE----------------------------------------------LSGE---NIN 113 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~~--~~~~~~----------------------------------------------~~~~---~~~ 113 (293)
...|+.+.+||.+..+ +...+. +.++ +.+
T Consensus 117 ~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrs 196 (764)
T KOG1063|consen 117 KAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRS 196 (764)
T ss_pred eccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhh
Confidence 3679999999985444 110000 0000 112
Q ss_pred EEEcC---CCCEEEEEeCCCeEEEEEccccc----eeeeecccceeeeeEEecCCCE-------EEEecCCCCEEEEEEC
Q 022716 114 ITYKP---DGTHIAVGNRDDELTILDVRKFK----PIHRRKFGYEVNEIAWNMTGEM-------FFLTTGNAGCYCIAID 179 (293)
Q Consensus 114 ~~~~~---~~~~l~~~~~d~~i~l~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~ 179 (293)
++|.. +.-+|++++.|..|+||.+.-.. ..++.......+.-.+...++. ..+..|++-++++.|+
T Consensus 197 l~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~ 276 (764)
T KOG1063|consen 197 LAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH 276 (764)
T ss_pred hhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc
Confidence 34433 23478888999999999874322 1111110000000001101111 1123567889999999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCC--E-----EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE--E--
Q 022716 180 PMGRYFAVGSADSLVSLWDISEM--L-----CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV--H-- 248 (293)
Q Consensus 180 ~~~~~l~~gs~d~~i~iwd~~~~--~-----~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~--~-- 248 (293)
|.+..|+++|+|+++.+|..... . ++....+........-|+|++..+++-+.-|-.++|..+....- .
T Consensus 277 p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 277 PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccc
Confidence 99999999999999999976543 2 22233333445778889999999999999999999984432211 1
Q ss_pred EEecCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 249 QIPCRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 249 ~~~~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
.-.+-..|.+|+|+|.|.+|.++|.|..=+
T Consensus 357 iSGH~~~V~dv~W~psGeflLsvs~DQTTR 386 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTR 386 (764)
T ss_pred cccccccceeeeecCCCCEEEEecccccee
Confidence 123456799999999999999999997443
No 169
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=6.4e-17 Score=141.20 Aligned_cols=223 Identities=20% Similarity=0.272 Sum_probs=149.1
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
.+.++.|...+.+.+|||||++|+.++.+ ..|.+||+.... ......+.+| ...++|+|++..++++.+.++
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~--~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA--RKVVASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc--eEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 45567888899999999999999988754 369999986432 1111223333 346799998655555555788
Q ss_pred eEEEE--eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 90 TVRLW--DARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 90 ~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
.+.+| |+.++................|+|||+.++..+ .++...+|+++....... .+
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-------------------~l 331 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-------------------LV 331 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-------------------Ee
Confidence 76655 666655443333344456789999999877665 567888887643211000 00
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEc--CCC
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV--HTG 244 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~--~~~ 244 (293)
.+.. .+..++|+++.++..+.++ +.+||+.++.... +... ....+++|+|+|++|+.++.++.+.+|.+ .+|
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 1111 3467899999998887765 5669998875432 2222 23466889999999999999998888775 357
Q ss_pred CEEEEEec-CCCcceeEECCCC
Q 022716 245 RTVHQIPC-RAAMNSVEWNPKY 265 (293)
Q Consensus 245 ~~~~~~~~-~~~i~~~~~sp~~ 265 (293)
+.+..+.. ...+...+|||-.
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred CceEEccCCCCCCCCcccCCCC
Confidence 77776654 4558889999953
No 170
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=3.5e-18 Score=140.24 Aligned_cols=204 Identities=15% Similarity=0.195 Sum_probs=152.7
Q ss_pred eeCCcCCeeEEEEcCCCC-CEEEEEeCCCeEEEEeCCCCee----eeee-eecCceEEEEEcCCC-CEEEEEeCCCeEEE
Q 022716 62 LRGHADSVDQLCWDPKHA-DLIATASGDKTVRLWDARSGKC----SQQA-ELSGENINITYKPDG-THIAVGNRDDELTI 134 (293)
Q Consensus 62 ~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~----~~~~-~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l 134 (293)
.+-+..+|++++|+|... .++++|..-|+|-+||+.+.+. ...+ .+.+++.++.|+|.. ..+++.+.||++++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 345778999999999876 6888899999999999964322 1222 234567789999854 57888999999999
Q ss_pred EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE-EEEeeccCC
Q 022716 135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-VRTFTKLEW 213 (293)
Q Consensus 135 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~-~~~~~~~~~ 213 (293)
.|+++......... .........+.++.+..-++.|+.=|...+||++.... ...+.-|+.
T Consensus 262 ~D~~~~i~e~v~s~------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 262 QDFEGNISEEVLSL------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred eeecchhhHHHhhc------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence 99876432111100 01122334566777777788888777999999986533 445566888
Q ss_pred CeeEEEEccCCC-EEEEecCCCcEEEEEcCCC--C---EEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716 214 PVRTISFSHTGD-YIASASEDLFIDISNVHTG--R---TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 283 (293)
Q Consensus 214 ~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~--~---~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~ 283 (293)
.|.+|+++|... +|||||.|.+++|||.+.- + .+..+.++.+|+++.|||.+.-|++.+.|.+|+++|..
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 999999999875 5799999999999998752 2 25677888999999999998779999999887777653
No 171
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=138.91 Aligned_cols=242 Identities=12% Similarity=0.151 Sum_probs=160.4
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeE----EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----IELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
-|...|.|+.|+.....+.+++.+..++-|++.......... +....|..+-.. . -..+.+.|+-++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~-~-~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSS-G-GGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCcccccccccc-C-CCCCcceEEEEcCCceEEE
Confidence 567778899998777655555554555555654322111100 000012111000 0 0123456778899999988
Q ss_pred EeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec----
Q 022716 94 WDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT---- 168 (293)
Q Consensus 94 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---- 168 (293)
.+ +.++...... +.+.+.+-+|+|||.-|++.++||.|++|.-...........+..+.++.|.|..+.+.+..
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~ 168 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHI 168 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeE
Confidence 76 3444333333 34556677899999999999999999999843322222234567889999999876555432
Q ss_pred ----------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716 169 ----------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE 232 (293)
Q Consensus 169 ----------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 232 (293)
|++-+.+++|+|..+++++|++|-.-++||... ..+..-..|+.+|++++|+|+ +.++.+|.
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cceeeeee
Confidence 345578999999999999999999999999644 445555689999999999999 55555554
Q ss_pred CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 233 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 233 d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
. ++++ ..+..++|..++|||||.+++.|...+
T Consensus 247 n-t~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 247 N-TARF----------SSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred e-eeee----------cCCCccceEEEEEcCCCceeeccccCc
Confidence 2 2331 223356799999999999999888765
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=5.6e-15 Score=127.63 Aligned_cols=243 Identities=30% Similarity=0.498 Sum_probs=177.0
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
....+.+|...|.+++|+|++..+++++. |+.+++|++... .....+.+|...|..+.|+|.+...+++++.|+.
T Consensus 147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC----ceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 34667899999999999999999998886 999999998741 1223455699999999999875435666699999
Q ss_pred EEEEeCCCCeeee-eeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEec
Q 022716 91 VRLWDARSGKCSQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 91 i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
+++||...+.... .+..+.......|+|++..+++++.|+.+++||++.... .. ....
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--------------------~~~~ 282 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--------------------TLSG 282 (466)
T ss_pred EEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEE--------------------EEec
Confidence 9999988666655 333333332127999998899999999999999876543 11 0123
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee--ccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCCCC
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTGR 245 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~~~ 245 (293)
+...+.++.+.|++..+++++.|+.+.+||........... .|...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 35567788999988888889999899999998876666655 677779999994343556555 688999999998877
Q ss_pred EEEEEecCCCcceeEECCCCCeEEE-EEcCCCCCC
Q 022716 246 TVHQIPCRAAMNSVEWNPKYNLLAY-AGDDKNKYQ 279 (293)
Q Consensus 246 ~~~~~~~~~~i~~~~~sp~~~~la~-~~~d~~~~~ 279 (293)
..........+..+.+++ ...+.. ++.+..+.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 396 (466)
T COG2319 363 PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRL 396 (466)
T ss_pred eeEEecCCceEEEEEECC-CCCEEEEecCCCceEE
Confidence 333333333488999999 533333 455543333
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=2.8e-16 Score=137.49 Aligned_cols=248 Identities=16% Similarity=0.235 Sum_probs=169.5
Q ss_pred ccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeCCCeEEEE
Q 022716 19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVRLW 94 (293)
Q Consensus 19 h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i~vw 94 (293)
-...|+|+.|+|.. +.+|.|..+|+|-+||+...... .........|..++..+.|..... .-++|++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 35799999999965 56678888999999999865432 122233456889999999965322 347899999999999
Q ss_pred eCCCCeeeee------e-------eecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716 95 DARSGKCSQQ------A-------ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 95 d~~~~~~~~~------~-------~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
+++.-..... . .......++.|.+ +-..+++|+.+|.|.--.-....+.... .+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~---------~~--- 388 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV---------SY--- 388 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc---------cc---
Confidence 8765433111 0 1112345678876 4457999999998876443332221100 00
Q ss_pred CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-CCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEE
Q 022716 161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDI 238 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~i 238 (293)
........+.+.++++.++|-+..+...+.|.+++||... .-.++..+..+...|.+++|||... .+|++..||.|.+
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~i 468 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDI 468 (555)
T ss_pred cccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceeh
Confidence 0112345667788999999987655444449999999977 5555656666666799999999865 5688889999999
Q ss_pred EEcCCCC--EEEE-EecCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 239 SNVHTGR--TVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 239 w~~~~~~--~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
||+.... .+.. ..+....+.+.|++.|..||.|+..|++.
T Consensus 469 WDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 469 WDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred hhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEE
Confidence 9987543 2222 22344567889999999999998775433
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.4e-18 Score=151.91 Aligned_cols=260 Identities=20% Similarity=0.283 Sum_probs=182.5
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
+.+-||.+.|.|+.|...|.+++||+.|-.||||..+.. .....++||++.|+.++.+.. ...++++++|..|++
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----RCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccch----hhhccCCCCccccchhccchh-hhhhhhcccCceEEE
Confidence 446699999999999999999999999999999996532 233467899999999998654 457899999999999
Q ss_pred EeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee----eccc--ceeeeeEEecCCCEEEE
Q 022716 94 WDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR----RKFG--YEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 94 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~----~~~~--~~~~~v~~~~~~~~~~~ 166 (293)
|-+..+..+..+. +.+.+++++|+|-. +.+.||++++||.+ ..+... .++. ..+-.+.+-..+..+..
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccccc
Confidence 9999988776554 56788999999863 66779999999987 111100 0000 00111111111111110
Q ss_pred ecC-----CCCEEEEEECCCCC-----------EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCE-EEE
Q 022716 167 TTG-----NAGCYCIAIDPMGR-----------YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDY-IAS 229 (293)
Q Consensus 167 ~~~-----~~~~~~~~~~~~~~-----------~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-l~s 229 (293)
... ....-++++...+. +.+++=.+-.+.+|++..+...+.+.+|...+..+.++|-+.. ..+
T Consensus 334 gs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 000 00111223333333 3334444556788999999888888999999999999997654 578
Q ss_pred ecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716 230 ASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 283 (293)
Q Consensus 230 ~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~ 283 (293)
++.||...|||+-.|-.++.+. .+..+...+||++|..++...+=+.++|...|
T Consensus 414 ag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 414 AGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred ccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 8999999999999887765542 36678888999999998888766666665443
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.6e-17 Score=128.39 Aligned_cols=190 Identities=19% Similarity=0.246 Sum_probs=137.4
Q ss_pred CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--
Q 022716 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSG-- 109 (293)
Q Consensus 33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-- 109 (293)
..+|++-+.|.|++||.... . ..-.+.+|...++.+.|... ..+.+.+|+.||+|++||++.......+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~-~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---Q-LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccch---h-hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 46889999999999998752 1 12256788888888888553 56789999999999999998876555444332
Q ss_pred --ceEEEEEcCCCCEEEEEe----CCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716 110 --ENINITYKPDGTHIAVGN----RDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG 182 (293)
Q Consensus 110 --~~~~~~~~~~~~~l~~~~----~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (293)
+.++++..-.+..+++|+ .+-.+.+||.|..+. ++. +..+|++.++++.|+|..
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~-------------------~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ-------------------LNESHNDDVTQLRFHPSD 177 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh-------------------hhhhccCcceeEEecCCC
Confidence 345566555667777776 356799999987553 221 234678899999999975
Q ss_pred -CEEEEecCCCcEEEEeCCCCEE---EEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCC
Q 022716 183 -RYFAVGSADSLVSLWDISEMLC---VRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 183 -~~l~~gs~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~ 245 (293)
+.|++||-||.|.+||++.-.. +.....+...|..+.|..++ +.+.+-+..+..++|+++.+.
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 7899999999999999975421 11223455668888887665 457777788888888776654
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=3e-17 Score=126.13 Aligned_cols=248 Identities=17% Similarity=0.173 Sum_probs=170.1
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
+-+|.+.|+++.|-.+++ |.+|..-|.|++|++..+... ..+. .|...|+.+...|. +.+.+=+.|+.+.+|
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~----~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL----PLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILW 82 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCccc----hhhhhhccceeeceeecCC--cchhhcCCCceEEEE
Confidence 448999999999987775 889999999999999754211 1233 46677888877774 456788999999999
Q ss_pred eCCCCe--------------eeeeeee-----------cC------------ceEE---------------EEEc---CC
Q 022716 95 DARSGK--------------CSQQAEL-----------SG------------ENIN---------------ITYK---PD 119 (293)
Q Consensus 95 d~~~~~--------------~~~~~~~-----------~~------------~~~~---------------~~~~---~~ 119 (293)
++.-+. |...+.. ++ .... +.+. .+
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 886521 1111000 00 0001 1121 11
Q ss_pred CC--EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEE
Q 022716 120 GT--HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLW 197 (293)
Q Consensus 120 ~~--~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iw 197 (293)
++ .+++|.++|.+.+||+.....+-..+.. ........++..++.++.+.+.-..=++|+.+..+..|
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~----------~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS----------SKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccc----------cccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence 22 4677888999999998765322111110 01112345667788888888877777889999999999
Q ss_pred eCCCC--E-EEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEE
Q 022716 198 DISEM--L-CVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 198 d~~~~--~-~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~ 272 (293)
.+... . .+. +..--.-.|..+.+=||++.+||++-|+.|++|+.++...+-.+. +...|++++|+|+.+.+|.||
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 87532 1 122 222223368889999999999999999999999999998776554 456899999999999999999
Q ss_pred cCCCCCCC
Q 022716 273 DDKNKYQA 280 (293)
Q Consensus 273 ~d~~~~~~ 280 (293)
.|..+-.|
T Consensus 313 kD~rISLW 320 (323)
T KOG0322|consen 313 KDARISLW 320 (323)
T ss_pred CCceEEee
Confidence 99654433
No 177
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.2e-16 Score=126.59 Aligned_cols=226 Identities=15% Similarity=0.218 Sum_probs=171.0
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC--CeEEEEe
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWD 95 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd 95 (293)
+-.++|..++.. +..|++|-.+|.+++|..............+..+ ..+..+.-++.....+++||.. ..+.+||
T Consensus 103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 334556666543 3478889999999999987543222222333333 4566777777777788889998 8899999
Q ss_pred CCCCeeeeeee----------ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCC
Q 022716 96 ARSGKCSQQAE----------LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 96 ~~~~~~~~~~~----------~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~ 162 (293)
+...+.+.... .+--...+.|.+. ...+++++..+.+++||.+... |+..
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~----------------- 242 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ----------------- 242 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE-----------------
Confidence 98875433211 1111235778776 7899999999999999987532 2221
Q ss_pred EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
+.....++.++...|.++++.+|..-+.+..||++.+..+.. +.+..+.|++|..+|..++||+++.|..++|+|+
T Consensus 243 ---fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 243 ---FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred ---eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 223356778999999999999999999999999999987776 7888899999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCcceeEECCCCC
Q 022716 242 HTGRTVHQIPCRAAMNSVEWNPKYN 266 (293)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~~~sp~~~ 266 (293)
++.+++++.-.+..++.|-+.++-+
T Consensus 320 ktrkll~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 320 KTRKLLHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred ccchhhhhhhhhccccEEEecCCcc
Confidence 9988888777777888888876544
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=1e-15 Score=123.93 Aligned_cols=195 Identities=15% Similarity=0.215 Sum_probs=142.8
Q ss_pred eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-------eeeeeecC-ceEEEEEcCCC-CEEEEEeCCCeE
Q 022716 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-------SQQAELSG-ENINITYKPDG-THIAVGNRDDEL 132 (293)
Q Consensus 62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-------~~~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i 132 (293)
+.||.++|..+.|+|.+...++|||+|.+|.||.+-.+-. +..+..+. .+--++|+|.- +.|++++.|+++
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 5689999999999999888999999999999999854422 22233333 23457899854 568889999999
Q ss_pred EEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC
Q 022716 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 212 (293)
Q Consensus 133 ~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~ 212 (293)
.+|++.+++.+-. ..+.+.|+++.|+.+|.++++.+.|..|+|||.++++.+.+-..|.
T Consensus 157 ~iWnv~tgeali~---------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 157 SIWNVGTGEALIT---------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred EEEeccCCceeee---------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 9999987654322 2266778999999999999999999999999999999888877776
Q ss_pred C--CeeEEEEccCCCEEEEe---cCCCcEEEEEcCCCCE---EEEEecCCCcceeEECCCCCeEEEEEc-CCCCC
Q 022716 213 W--PVRTISFSHTGDYIASA---SEDLFIDISNVHTGRT---VHQIPCRAAMNSVEWNPKYNLLAYAGD-DKNKY 278 (293)
Q Consensus 213 ~--~v~~l~~sp~~~~l~s~---s~d~~i~iw~~~~~~~---~~~~~~~~~i~~~~~sp~~~~la~~~~-d~~~~ 278 (293)
+ +.+. -|-.+|..+.|| -.+..+-+||...-.. ...+...+.|-==-|.|+.+++-.+|. |++|+
T Consensus 216 G~k~~Ra-ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 216 GAKPARA-IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred CCCccee-EEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 4 3444 477788866666 3578899999765433 334444444433346777777666654 44333
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3e-16 Score=140.73 Aligned_cols=244 Identities=18% Similarity=0.249 Sum_probs=160.6
Q ss_pred ccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCCCCceeEE----EeeCCc----CCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 21 KKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDI----ELRGHA----DSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 21 ~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~----~~~~h~----~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
..|+.+.+-. |...+++|+.||.||||+-........... .+.++. +.-.-+.|....+ .|+++|.-..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRS 1188 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeE
Confidence 4688888754 335789999999999997543321111111 122221 1113346766544 5566666889
Q ss_pred EEEEeCCCCeeeeeeeecCc--eEEEEE-cCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716 91 VRLWDARSGKCSQQAELSGE--NINITY-KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 167 (293)
|+|||.....+...+..... ++++.- .+.|..+++|..||.+++||.|...+.... ..| -
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v--------~~~---------R 1251 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV--------CVY---------R 1251 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc--------eee---------c
Confidence 99999988776665544432 333332 245789999999999999998865432110 001 1
Q ss_pred cCCCC--EEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEee--cc---CCCeeEEEEccCCCEEEEecCCCcEEEE
Q 022716 168 TGNAG--CYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFT--KL---EWPVRTISFSHTGDYIASASEDLFIDIS 239 (293)
Q Consensus 168 ~~~~~--~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~---~~~v~~l~~sp~~~~l~s~s~d~~i~iw 239 (293)
.++.. |..+.+.+.| ..|++|+.||.|++||++.......+. .| ....+++..++....+|+|+. +.|+||
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence 12222 5667777755 369999999999999998642222221 22 235999999999999999999 999999
Q ss_pred EcCCCCEEEEE-------e-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 240 NVHTGRTVHQI-------P-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 240 ~~~~~~~~~~~-------~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
++...+ +..+ . -..++.+++|||..-++|.|+.| .++-||.-||
T Consensus 1331 ~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D--------s~V~iYs~~k 1382 (1387)
T KOG1517|consen 1331 SLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD--------STVSIYSCEK 1382 (1387)
T ss_pred ecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCC--------ceEEEeecCC
Confidence 985432 2211 1 23467899999999999999877 5778887775
No 180
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.8e-15 Score=131.38 Aligned_cols=264 Identities=16% Similarity=0.205 Sum_probs=173.2
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
.|...++|.+++|.++++|+|..||.|.+|.--...........+.=|.+.|.++.|++++ .+|+|||..+.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeec
Confidence 5666799999999999999999999999995322011111222355588899999999975 688999999999999999
Q ss_pred CCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee---eeecc---------cceeeeeEEecCCCEEE
Q 022716 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HRRKF---------GYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~---~~~~~---------~~~~~~v~~~~~~~~~~ 165 (293)
+++....-...+.+..+.++||+.+.++..+|+.|.+..+.+.... ..... ..-...+..+|.-....
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 8884444457788889999999999999999999999865322111 00000 00011122222111111
Q ss_pred EecC--------------------------------CCCEEEEEECCCCCEEEEec--------C--CCcEEEEeCCCCE
Q 022716 166 LTTG--------------------------------NAGCYCIAIDPMGRYFAVGS--------A--DSLVSLWDISEML 203 (293)
Q Consensus 166 ~~~~--------------------------------~~~~~~~~~~~~~~~l~~gs--------~--d~~i~iwd~~~~~ 203 (293)
+-.+ ...++.++.+..|.+++|.- . .-.+++|......
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 0000 11345666677788888753 2 2357788764321
Q ss_pred ---EEE--EeeccCCCeeEEEEc-cCCC-EEEEecCCCcEEEEEcCCCC------------EEEEEecCCCcceeEECCC
Q 022716 204 ---CVR--TFTKLEWPVRTISFS-HTGD-YIASASEDLFIDISNVHTGR------------TVHQIPCRAAMNSVEWNPK 264 (293)
Q Consensus 204 ---~~~--~~~~~~~~v~~l~~s-p~~~-~l~s~s~d~~i~iw~~~~~~------------~~~~~~~~~~i~~~~~sp~ 264 (293)
.+. ....|+..+.+.+|. |... .+++++.||.++||-+.+.+ .+..+ +..++++++|+.|
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITALCFSQD 520 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcccchhhcCC
Confidence 122 123577666666554 4344 79999999999999884322 12222 4678999999999
Q ss_pred CCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 265 YNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 265 ~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
|..||.+-+| ++.||++.+
T Consensus 521 Gslla~s~~~---------~Itiwd~~~ 539 (792)
T KOG1963|consen 521 GSLLAVSFDD---------TITIWDYDT 539 (792)
T ss_pred CcEEEEecCC---------EEEEecCCC
Confidence 9888877543 566776643
No 181
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=7.3e-16 Score=134.58 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=135.6
Q ss_pred CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---CeEEEEeCCCCeeeeeeeecCceEEEEEc
Q 022716 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYK 117 (293)
Q Consensus 41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 117 (293)
+..|.+||.+... ...+..|...+....|+|++. .|+.++.+ ..|.+||+.+++........+....++|+
T Consensus 183 ~~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCC-----ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence 4689999986422 123556778899999999865 45555443 47999999887644333344455578999
Q ss_pred CCCCEEEEEe-CCCeEEEE--EccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-CCCc
Q 022716 118 PDGTHIAVGN-RDDELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSL 193 (293)
Q Consensus 118 ~~~~~l~~~~-~d~~i~l~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~ 193 (293)
|||+.|+.+. .++...+| |+.+....+ +..+........|+|+|+.++..+ .++.
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~---------------------lt~~~~~~~~~~wSpDG~~i~f~s~~~g~ 315 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTPSQ---------------------LTSGAGNNTEPSWSPDGQSILFTSDRSGS 315 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCeEe---------------------eccCCCCcCCEEECCCCCEEEEEECCCCC
Confidence 9999888765 57766655 544332211 122233345678899998766554 5788
Q ss_pred EEEEeCCC-CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEE
Q 022716 194 VSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 194 i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 272 (293)
..||++.. +.....+ .+.. ...+|+|+|++|+..+.++ +.+||..+++...... .....++.|+|+|.+|++++
T Consensus 316 ~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 316 PQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSS 390 (429)
T ss_pred ceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEE
Confidence 88887642 1112222 3332 4578999999998888765 5559998886542222 22346789999999999999
Q ss_pred cCCCCC
Q 022716 273 DDKNKY 278 (293)
Q Consensus 273 ~d~~~~ 278 (293)
.++...
T Consensus 391 ~~g~~~ 396 (429)
T PRK01742 391 TQGLGK 396 (429)
T ss_pred cCCCce
Confidence 876554
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.8e-17 Score=135.38 Aligned_cols=224 Identities=23% Similarity=0.359 Sum_probs=151.2
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i 91 (293)
.+++.||.+-|.||+|+.+|.+|++||.|-.+.|||.-.. +.....-.||...|.++.|.|.. ..+++||+.|..|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4678999999999999999999999999999999998632 22223346899999999999854 4589999999999
Q ss_pred EEEeCCCCeee----------eeee-ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716 92 RLWDARSGKCS----------QQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM 159 (293)
Q Consensus 92 ~vwd~~~~~~~----------~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~ 159 (293)
+++|+...+.. ..+. +...+..++..|++ ..+.++++||+++-+|+|........ ..+....-+.
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~---~~~~~~l~ny 196 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD---EDCPSILVNY 196 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc---ccccHHHHHh
Confidence 99999753211 1111 11233457777887 78899999999999999864321110 0000000000
Q ss_pred CCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCC--------E----------EEEEee-ccC-------
Q 022716 160 TGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM--------L----------CVRTFT-KLE------- 212 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~--------~----------~~~~~~-~~~------- 212 (293)
...+ -...|+.++|.. .+||+|+.|--.++||.+.. . +++-+. +|-
T Consensus 197 ~~~l-------ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 197 NPQL-------IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred chhh-------heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence 0111 234688899976 57899999999999994321 1 122111 111
Q ss_pred ----CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716 213 ----WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 249 (293)
Q Consensus 213 ----~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~ 249 (293)
...+.+.|+|+|.-|...=....|+++|+..++.+.+
T Consensus 270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 1156689999998765554555689999987665433
No 183
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.1e-17 Score=134.53 Aligned_cols=274 Identities=22% Similarity=0.221 Sum_probs=196.8
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC-CEEEEEeCCCeEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-~~l~s~~~d~~i~ 92 (293)
..+.+|.+-|..+.|+..|..|+|||.|..|.+||..... .......+|...|..-.|.|..+ .-+++++.||.++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~---~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS---PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccC---cccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3467999999999999999999999999999999986421 11122347888888888887543 3588999999999
Q ss_pred EEeCCCCe-ee---eeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeec-----cc--ceeeeeEEecC
Q 022716 93 LWDARSGK-CS---QQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK-----FG--YEVNEIAWNMT 160 (293)
Q Consensus 93 vwd~~~~~-~~---~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~-----~~--~~~~~v~~~~~ 160 (293)
+=.+.... +. ....+++++..++..|+. ..|.+++.|+.+.-+|++...+..... .. .....+.-+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 87664332 22 223456777778877754 468889999999999998766533221 11 12344444444
Q ss_pred CCEEEEecC----------------------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCC--CC--
Q 022716 161 GEMFFLTTG----------------------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDIS--EM-- 202 (293)
Q Consensus 161 ~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~--~~-- 202 (293)
....+...+ ...|++++++.++..+++.-.|--|++|.-. .+
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 332222211 1247899999888888888889999999532 22
Q ss_pred --------EEEEE-eeccCC--CeeEEEE-ccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEE
Q 022716 203 --------LCVRT-FTKLEW--PVRTISF-SHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLA 269 (293)
Q Consensus 203 --------~~~~~-~~~~~~--~v~~l~~-sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la 269 (293)
...+. +++|.+ .|..+-| -|...|+++||+-|.|.||+-++++.+..|.. +.-||||+=||....||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 12222 677764 5777775 58899999999999999999999998877754 33589999999999999
Q ss_pred EEEcCCCCCCCCc-ceEEEEee
Q 022716 270 YAGDDKNKYQADE-GVFRIYGF 290 (293)
Q Consensus 270 ~~~~d~~~~~~~~-~~~~~~~~ 290 (293)
++|-|..++||-- +.-|+...
T Consensus 453 sSGid~DVKIWTP~~~er~~~~ 474 (559)
T KOG1334|consen 453 SSGIDHDVKIWTPLTAERATEP 474 (559)
T ss_pred ccCCccceeeecCCccccccCh
Confidence 9999988888765 44444433
No 184
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4e-15 Score=116.88 Aligned_cols=233 Identities=18% Similarity=0.317 Sum_probs=154.6
Q ss_pred eeecCccccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCC--C-Cc--eeEEEeeCCcCCeeEEEEcCCC-CCEEEEE
Q 022716 14 REYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHG--H-GK--VKDIELRGHADSVDQLCWDPKH-ADLIATA 85 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~--~-~~--~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~ 85 (293)
.....|.+.|..+.|-+ -|+.+|+++.|++++||.-.... . +. .....+......|+++.|.|.. +-.++++
T Consensus 53 s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~ 132 (361)
T KOG2445|consen 53 SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA 132 (361)
T ss_pred eeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe
Confidence 34568999999999965 48899999999999999742111 1 11 1233455667889999999964 3358999
Q ss_pred eCCCeEEEEeCCCCee------eeeee--------ecCceEEEEEcCCC---CEEEEEeCC-----CeEEEEEcccccee
Q 022716 86 SGDKTVRLWDARSGKC------SQQAE--------LSGENINITYKPDG---THIAVGNRD-----DELTILDVRKFKPI 143 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~~------~~~~~--------~~~~~~~~~~~~~~---~~l~~~~~d-----~~i~l~d~~~~~~~ 143 (293)
+.||.+|||+.-..-- ...++ .+....|+.|.|.. .++++|+.+ +.+.||........
T Consensus 133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 9999999998643321 11111 22234467777632 356666543 26777764332210
Q ss_pred eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC----CCEEEEecCCCcEEEEeCCCC-----------------
Q 022716 144 HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM----GRYFAVGSADSLVSLWDISEM----------------- 202 (293)
Q Consensus 144 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~gs~d~~i~iwd~~~~----------------- 202 (293)
|..- -.+..+..++..|+|.|+ ...||+++.|| |+||+++..
T Consensus 213 -------------w~kv---a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 213 -------------WLKV---AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred -------------eeee---hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccc
Confidence 0000 001234556777777775 34689999999 999998621
Q ss_pred ---EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC---CCEEEEEecCCCcceeEECC
Q 022716 203 ---LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT---GRTVHQIPCRAAMNSVEWNP 263 (293)
Q Consensus 203 ---~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~---~~~~~~~~~~~~i~~~~~sp 263 (293)
+.+..+..|...|..++|+-.|..|++.+.||.|++|...- .++.-.+.....+....|++
T Consensus 276 l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 276 LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence 23445667889999999999999999999999999997643 23444555555666666654
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=7e-16 Score=120.17 Aligned_cols=244 Identities=17% Similarity=0.290 Sum_probs=162.8
Q ss_pred ceeecCccccEEEEEECCCCCeE-EEEeCC-------CcEEEeecCCCCCC-ceeEE----Eee-CCcCCeeEEEEcCCC
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKL-ASGSVD-------QTARVWHIEPHGHG-KVKDI----ELR-GHADSVDQLCWDPKH 78 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l-~s~~~d-------g~v~iw~~~~~~~~-~~~~~----~~~-~h~~~i~~~~~~~~~ 78 (293)
.+.|..|.+.|..++-+|-...+ +|.-.| -.+-||.+...-.+ ....+ .+. .+-+.|.++.|.|+
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn- 134 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN- 134 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-
Confidence 35566788999999999977655 443221 24668988643211 11111 111 24458999999995
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeee-eeee------ecCceEEEEEcC--CCCEEEEEeCCCeEEEEEccccceeeeeccc
Q 022716 79 ADLIATASGDKTVRLWDARSGKCS-QQAE------LSGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFG 149 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~-~~~~------~~~~~~~~~~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~ 149 (293)
+..+++. .|..|.+|++..+..+ .... ...+..+-+|+| +|..+++. .|+++..||+|+.+....+.
T Consensus 135 s~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~-- 210 (370)
T KOG1007|consen 135 SDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIE-- 210 (370)
T ss_pred CCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchh--
Confidence 5667654 4889999999877542 2211 122344567887 77777765 58999999999765433221
Q ss_pred ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCC-CE
Q 022716 150 YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTG-DY 226 (293)
Q Consensus 150 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~-~~ 226 (293)
..+...+..+.|+|+.. +|+++++||.|+|||+++ ..++.++.+|.-+|.++.|+|.- ++
T Consensus 211 -----------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 211 -----------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred -----------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 11222345677778764 589999999999999975 45678899999999999999974 67
Q ss_pred EEEecCCCcEEEEEcCCCC---------------------E--------EEEE-ecCCCcceeEECCCCC-eEEEEEcCC
Q 022716 227 IASASEDLFIDISNVHTGR---------------------T--------VHQI-PCRAAMNSVEWNPKYN-LLAYAGDDK 275 (293)
Q Consensus 227 l~s~s~d~~i~iw~~~~~~---------------------~--------~~~~-~~~~~i~~~~~sp~~~-~la~~~~d~ 275 (293)
+.+||.|..|.+|....-. . +..+ .+..+|-+++||.-.. .||+=+.|+
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 7999999999998542110 0 0111 2345788999987554 678888886
Q ss_pred CCC
Q 022716 276 NKY 278 (293)
Q Consensus 276 ~~~ 278 (293)
-+.
T Consensus 354 Rvi 356 (370)
T KOG1007|consen 354 RVI 356 (370)
T ss_pred eEE
Confidence 444
No 186
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=7.9e-15 Score=127.91 Aligned_cols=223 Identities=16% Similarity=0.233 Sum_probs=144.2
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeC---CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
.+.++.+...+.+.+|||||+.|+..+. +..+.+|++.... .. .+......+....|+|++..++++.+.++
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---~~--~l~~~~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VR--QVASFPRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EccCCCCCcCCeEECCCCCEEEEEEcCCC
Confidence 3445666778999999999999986543 4578888886431 11 12222233456789998766665555555
Q ss_pred --eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC-CeEEEE--EccccceeeeecccceeeeeEEecCCCEE
Q 022716 90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-DELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 90 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~l~--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
.|.+||+++++...............|+|||+.++..+.+ +...+| |+.+....+ +.
T Consensus 266 ~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~----------lt-------- 327 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR----------IT-------- 327 (429)
T ss_pred CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE----------ee--------
Confidence 5888999887765544444456678999999988877653 444444 554432211 11
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCC---CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCc---EEE
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF---IDI 238 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~---i~i 238 (293)
..........++|+|++++..+.+ ..|.+||+.++.. ..+... .......|+|||++|+.++.++. +++
T Consensus 328 ---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~ 402 (429)
T PRK03629 328 ---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNL 402 (429)
T ss_pred ---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 111123356788999888776543 3588899887753 334322 23456789999999999887764 667
Q ss_pred EEcCCCCEEEEEe-cCCCcceeEECCC
Q 022716 239 SNVHTGRTVHQIP-CRAAMNSVEWNPK 264 (293)
Q Consensus 239 w~~~~~~~~~~~~-~~~~i~~~~~sp~ 264 (293)
++. +|+....+. +...+...+|+|-
T Consensus 403 ~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 403 VST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEC-CCCCeEECccCCCCcCCcccCCC
Confidence 777 455455554 3456888999983
No 187
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=4.7e-17 Score=128.65 Aligned_cols=223 Identities=22% Similarity=0.273 Sum_probs=149.9
Q ss_pred ccccceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 9 ~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
.......|-||...|..+.|.|+. +++++||.|..||+|++.+..+ ....--+.+|.+.|.++.|++++ +.++|+|.
T Consensus 124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C-v~VfGG~egHrdeVLSvD~~~~g-d~i~ScGm 201 (385)
T KOG1034|consen 124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC-VAVFGGVEGHRDEVLSVDFSLDG-DRIASCGM 201 (385)
T ss_pred hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE-EEEecccccccCcEEEEEEcCCC-CeeeccCC
Confidence 344556788999999999999987 4668999999999999975321 11111356899999999999975 58999999
Q ss_pred CCeEEEEeCCCCeeeeeeeec-----------------------------CceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716 88 DKTVRLWDARSGKCSQQAELS-----------------------------GENINITYKPDGTHIAVGNRDDELTILDVR 138 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~ 138 (293)
|.++++|++...+....++.. ..+-+++| -|.++++-+.++.|..|-..
T Consensus 202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPG 279 (385)
T ss_pred cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecc
Confidence 999999998744322111110 00111222 24678888899999999873
Q ss_pred c-cceeeeecccceeeeeEEecCCCEEEEecCCCCEE--EEEECCCCCEEEEecCCCcEEEEeCCCCEEEE--Eee--cc
Q 022716 139 K-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY--CIAIDPMGRYFAVGSADSLVSLWDISEMLCVR--TFT--KL 211 (293)
Q Consensus 139 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~--~~~--~~ 211 (293)
. .+..+..+.+.....+. ..+.-.+..+. -.+++|-++.||.|...|.|.+||++..+... ++. .-
T Consensus 280 kl~e~~~~vkp~es~~Ti~-------~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~ 352 (385)
T KOG1034|consen 280 KLEESIHNVKPPESATTIL-------GEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS 352 (385)
T ss_pred hhhhhhhccCCCccceeee-------eEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc
Confidence 2 22222221111111100 00111112222 34677889999999999999999998765432 222 22
Q ss_pred CCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 212 EWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
...|+..+||.||..|+...+|++|--||..
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3579999999999999999999999999853
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=2.6e-14 Score=120.99 Aligned_cols=220 Identities=15% Similarity=0.218 Sum_probs=138.3
Q ss_pred EEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-CCee--eeeeeecCce
Q 022716 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKC--SQQAELSGEN 111 (293)
Q Consensus 35 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~--~~~~~~~~~~ 111 (293)
.++...|+.|.+|++... +....+....+.+....+.++|++..+++++..++.|.+|+++ ++.. .......+.+
T Consensus 5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE--GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCC--CceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 345577999999999643 2222222222334566788999754344444558899999986 3332 2222334456
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEE-Eec
Q 022716 112 INITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA-VGS 189 (293)
Q Consensus 112 ~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gs 189 (293)
..++++|++++++++.. ++.+.+|++........ .+. ...+...+..++++|+++++. +..
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-----~~~------------~~~~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA-----PIQ------------IIEGLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-----cee------------eccCCCcccEeEeCCCCCEEEEeeC
Confidence 78999999998888764 78999999864221110 000 001112345678899998875 455
Q ss_pred CCCcEEEEeCCCCEEEEE-----ee-ccCCCeeEEEEccCCCEEEEecC-CCcEEEEEcCC--CCE--EEEEecC-----
Q 022716 190 ADSLVSLWDISEMLCVRT-----FT-KLEWPVRTISFSHTGDYIASASE-DLFIDISNVHT--GRT--VHQIPCR----- 253 (293)
Q Consensus 190 ~d~~i~iwd~~~~~~~~~-----~~-~~~~~v~~l~~sp~~~~l~s~s~-d~~i~iw~~~~--~~~--~~~~~~~----- 253 (293)
.++.|.+||+.+...+.. .. ........+.|+|+|++++++.. ++.|.+|++.. ++. +..+...
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 679999999976322211 11 12235678999999999987775 89999999974 332 2222210
Q ss_pred C--CcceeEECCCCCeEEEEEc
Q 022716 254 A--AMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 254 ~--~i~~~~~sp~~~~la~~~~ 273 (293)
. ....+.++|+++++.++..
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CCccceeEEECCCCCEEEEecC
Confidence 0 1225889999999888754
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=2.3e-16 Score=127.94 Aligned_cols=207 Identities=20% Similarity=0.306 Sum_probs=148.8
Q ss_pred cccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCc-----eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGK-----VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 20 ~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~-----~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
..+|..+.|.+.+. .|+||+.|..||+|.+....... .....+..|...|+.+.|+|+ +++|+||+.+|.+.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEE
Confidence 36899999998876 99999999999999886432222 122346789999999999997 479999999999999
Q ss_pred EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
|....-.. . +... ....+.. .|- ....+..+...+
T Consensus 92 Wk~~~~~~-------------~--~~d~---e~~~~ke--~w~-------------------------v~k~lr~h~~di 126 (434)
T KOG1009|consen 92 WKQGDVRI-------------F--DADT---EADLNKE--KWV-------------------------VKKVLRGHRDDI 126 (434)
T ss_pred EEecCcCC-------------c--cccc---hhhhCcc--ceE-------------------------EEEEecccccch
Confidence 97543100 0 0000 0000000 000 001122355667
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE---
Q 022716 174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI--- 250 (293)
Q Consensus 174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~--- 250 (293)
+.++|+|++.++++|+.|+.+++||+..+..+..+..|...+..++|.|-++++++-|.|...+..+...-+.++..
T Consensus 127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~ 206 (434)
T KOG1009|consen 127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD 206 (434)
T ss_pred hhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence 88999999999999999999999999999999999999999999999999999999999987666665443322111
Q ss_pred -----------------ecCCC----cceeEECCCCCeEEEEE
Q 022716 251 -----------------PCRAA----MNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 251 -----------------~~~~~----i~~~~~sp~~~~la~~~ 272 (293)
-+... .+.++|+|+|.++++.+
T Consensus 207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 11111 25789999999988876
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.7e-14 Score=110.00 Aligned_cols=224 Identities=13% Similarity=0.194 Sum_probs=155.4
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCC------CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHG------HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
|-.=+++|.+++|+.|..+|+|-+..+.+-. .++..-...++|..+|+.++|+. ++|++|+ ||.|+=|.-
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEeee
Confidence 4455789999999999999999999875321 12223344579999999999973 4666665 599998864
Q ss_pred CCCe----eeee------eeec----CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716 97 RSGK----CSQQ------AELS----GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 97 ~~~~----~~~~------~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
+... +... ++.. ..+..|-..|....++.++.|+.+..||+++++..+..+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r--------------- 153 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR--------------- 153 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc---------------
Confidence 3211 1111 1111 123357778887778888899999999999877554432
Q ss_pred EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC----------CeeEEEEccCCCEEEEecC
Q 022716 163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW----------PVRTISFSHTGDYIASASE 232 (293)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~----------~v~~l~~sp~~~~l~s~s~ 232 (293)
.|.+.+-+++.-.....+++|++||++++||++++++++.+...+. +|-+++ -+..+|++|+.
T Consensus 154 -----GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG 226 (325)
T KOG0649|consen 154 -----GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG 226 (325)
T ss_pred -----CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC
Confidence 3344455666545566789999999999999999988877654322 345554 45568877654
Q ss_pred CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 233 DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 233 d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
-.+.+|.+...+....++-..++.-+.|-. ..+.++|..+
T Consensus 227 -p~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~ 266 (325)
T KOG0649|consen 227 -PKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGN 266 (325)
T ss_pred -CceeEEeccCCCceEEEecccceeEeeeec--ceEEEecccc
Confidence 458999999988888888888888888844 4555555443
No 191
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.5e-14 Score=126.71 Aligned_cols=224 Identities=13% Similarity=0.183 Sum_probs=147.7
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeC---CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
..+.++.|...+.+.+|+|||+.|+..+. +..|.+||+... ... .+..+...+....|+|++..++++.+.+
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---~~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---QRE--LVGNFPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---cEE--EeecCCCcccCcEECCCCCEEEEEEecC
Confidence 34567788889999999999999988764 468999998643 211 2344556677889999876666777776
Q ss_pred Ce--EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716 89 KT--VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 89 ~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
+. |.+||+.++.........+......|+|||+.++..+. ++ .+.++|+......+.
T Consensus 268 g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~l------------------ 329 (435)
T PRK05137 268 GNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRI------------------ 329 (435)
T ss_pred CCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEe------------------
Confidence 65 66778887765443333344556899999999887763 33 577777655332211
Q ss_pred EEEecCCCCEEEEEECCCCCEEEEecCC---CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC------C
Q 022716 164 FFLTTGNAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED------L 234 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d------~ 234 (293)
..+........|+|+|+.++..+.+ ..|.+||+..+.. ..+. ....+....|+|||+.|+..+.+ .
T Consensus 330 ---t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 330 ---SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred ---ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 1111223346688888888776543 3688888765432 3332 23356788999999988765542 2
Q ss_pred cEEEEEcCCCCEEEEEecCCCcceeEECCC
Q 022716 235 FIDISNVHTGRTVHQIPCRAAMNSVEWNPK 264 (293)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~ 264 (293)
.+++.++..+.. ..+.....+...+|+|-
T Consensus 405 ~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 405 KLYTVDLTGRNE-REVPTPGDASDPAWSPL 433 (435)
T ss_pred eEEEEECCCCce-EEccCCCCccCcccCCC
Confidence 577888765543 44444445677889884
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=4.6e-15 Score=117.13 Aligned_cols=228 Identities=17% Similarity=0.247 Sum_probs=166.3
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC-C
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA-R 97 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~-~ 97 (293)
-..+|+|-+|++|..++|.+-....|.||.......-. ..-.+..|...|+.+.|.|.. +.|++|+.|....+|.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~-~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWE-PAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCce-eceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence 35799999999999999999999999999876433111 223567899999999999974 57899999999999998 4
Q ss_pred CCeeee---eeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 98 SGKCSQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 98 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
.++... ...+.....++.|+|.++.+++|+....+.+|=++..+.--..++ .-....+.+.
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh----------------ikkPirStv~ 150 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH----------------IKKPIRSTVT 150 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh----------------hCCcccccee
Confidence 444332 345677788999999999999999999888886654322110000 0001234568
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCC-----C-------------CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcE
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDIS-----E-------------MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI 236 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~-----~-------------~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i 236 (293)
+++++|++-+++.|+.|+..++|..- . ++.+.++..-...+..+.|+|+|..|+-.+.|..+
T Consensus 151 sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 151 SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 89999999999999999999999741 0 11122222334679999999999999999999999
Q ss_pred EEEEcCCCCE-EEE-EecCCCcceeEECCC
Q 022716 237 DISNVHTGRT-VHQ-IPCRAAMNSVEWNPK 264 (293)
Q Consensus 237 ~iw~~~~~~~-~~~-~~~~~~i~~~~~sp~ 264 (293)
.+-|.....+ +.. ....-|..++.|-.+
T Consensus 231 ~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 231 SFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred EEeecCCCchhccchhhccCCceeeEeecC
Confidence 9999876542 221 222356777777543
No 193
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=9.9e-15 Score=127.72 Aligned_cols=222 Identities=17% Similarity=0.198 Sum_probs=145.3
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
.+.++.|...+.+.+|+|||+.|+..+.+ ..|.+|++.... .. .+..+........|+|++..++++.+.++
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~~--~l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---RE--LVASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---EE--EeccCCCCccCceECCCCCEEEEEEeCCC
Confidence 45566777889999999999999987743 468899986432 11 22233334457789998766666766665
Q ss_pred --eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CCe--EEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716 90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 90 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
.|.+||+.+++..............+|+|||++++..+. ++. +.++|+.+.+..+.
T Consensus 271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l------------------- 331 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL------------------- 331 (433)
T ss_pred CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-------------------
Confidence 589999988775543333334456899999999887764 444 55556544332111
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCC---cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEE
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDI 238 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~i 238 (293)
..........+++|+|++++..+.++ .|.+||+.++... .+.. ........|+|||++++..+.+ ..+++
T Consensus 332 --t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~ 407 (433)
T PRK04922 332 --TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLAA 407 (433)
T ss_pred --ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 01111223568899999887765433 5999999877543 3432 2244567899999988776653 45778
Q ss_pred EEcCCCCEEEEEec-CCCcceeEECC
Q 022716 239 SNVHTGRTVHQIPC-RAAMNSVEWNP 263 (293)
Q Consensus 239 w~~~~~~~~~~~~~-~~~i~~~~~sp 263 (293)
++.. +.....+.. ...+...+|+|
T Consensus 408 ~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 408 VSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EECC-CCceEEcccCCCCCCCCccCC
Confidence 8874 444455543 35677889988
No 194
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=3.8e-14 Score=111.96 Aligned_cols=236 Identities=17% Similarity=0.273 Sum_probs=155.6
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEE-EeCC------CeEEEE
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT-ASGD------KTVRLW 94 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s-~~~d------~~i~vw 94 (293)
...+++|+-|...++.|..+| .|||+.++-...... .-+...+.-+...-. .++|+- ||.. ..+.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r----~~~~~G~~~veMLfR-~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR----QFIDGGFKIVEMLFR-SNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh----ccccCchhhhhHhhh-hceEEEecCCCCCCCCCceEEEE
Confidence 445699998888888887666 699998763221111 111111110110001 233322 3322 458999
Q ss_pred eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc-ccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
|-...+++..+.+..++..+.+.++ .+++. .+++|.+|... +.+.++.... .-+|.| .
T Consensus 81 DD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et-------~~NPkG-----------l 139 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIET-------RSNPKG-----------L 139 (346)
T ss_pred ecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeec-------ccCCCc-----------e
Confidence 9777788888889999999998876 44444 46899999876 3333332211 112222 1
Q ss_pred EEEEECCCCCEEEE-ecCCCcEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCCEEEEecCCCc-EEEEEcCCCCEEEE
Q 022716 174 YCIAIDPMGRYFAV-GSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQ 249 (293)
Q Consensus 174 ~~~~~~~~~~~l~~-gs~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~~~~~~~ 249 (293)
-+++-+.+...||. |-.-|.|.|-|+...+. ...+..|+.+|.+++.+-+|..+||+|..|+ |+|||..+|.++..
T Consensus 140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 11111112223333 34468899999876544 4678899999999999999999999999998 79999999998876
Q ss_pred Ee---cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 250 IP---CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 250 ~~---~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+. .+..|-+++|||+..+||.+|+ +|++.|++++-
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSd--------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSD--------KGTLHIFSLRD 257 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcC--------CCeEEEEEeec
Confidence 63 3456889999999999999984 58899988863
No 195
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=7.3e-15 Score=113.92 Aligned_cols=115 Identities=26% Similarity=0.375 Sum_probs=89.7
Q ss_pred CCEEEEEECCCCCEEEE--ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEEEEcCCCC
Q 022716 171 AGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGR 245 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~--gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~iw~~~~~~ 245 (293)
+++.+++|+|+++.+|+ |..++.|.+||++ ++.+..+. ..+++.+.|||+|++|++|+.+ |.+.+||..+.+
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 45788888999887644 4567899999996 55565553 4678999999999999998744 669999999888
Q ss_pred EEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 246 TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 246 ~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.+....+. .++.++|+|+|.+|+++... -+...+..++||++.
T Consensus 137 ~i~~~~~~-~~t~~~WsPdGr~~~ta~t~--~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 137 KISTFEHS-DATDVEWSPDGRYLATATTS--PRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeeccccC-cEEEEEEcCCCCEEEEEEec--cceeccccEEEEEec
Confidence 87776543 47899999999999999864 233345667999874
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=1.4e-14 Score=132.04 Aligned_cols=254 Identities=17% Similarity=0.204 Sum_probs=168.4
Q ss_pred cccceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCC-ce--eEEEeeCCcCCeeEEEEcCCCCCEEEEE
Q 022716 10 NLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KV--KDIELRGHADSVDQLCWDPKHADLIATA 85 (293)
Q Consensus 10 ~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~-~~--~~~~~~~h~~~i~~~~~~~~~~~~l~s~ 85 (293)
+..+.++..|...|..++.+++. .+++|||.||+||+|+...-... .. ....+..-...+..+...+. ++.++.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~-~~~~Av~ 1116 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN-GDQFAVS 1116 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC-CCeEEEE
Confidence 34556778899888899888665 99999999999999998642211 11 11222223456777777664 5678888
Q ss_pred eCCCeEEEEeCCCCee-------eee--eeecCceEEEE-EcC-CCC-EEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716 86 SGDKTVRLWDARSGKC-------SQQ--AELSGENINIT-YKP-DGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVN 153 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~~-------~~~--~~~~~~~~~~~-~~~-~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~ 153 (293)
+.||.|++.+++.... ... ....+.++.|. +.. .+. .++.++.-+.+..||++........+..
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~---- 1192 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ---- 1192 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC----
Confidence 9999999999876211 111 12233444442 322 233 6777788889999999875543332221
Q ss_pred eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCC---CEEEE
Q 022716 154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTG---DYIAS 229 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~---~~l~s 229 (293)
...+.+++++++|.+.++++|+..|.+.+||++-+..+.+.. .+..+++.+..+|-. ...++
T Consensus 1193 --------------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1193 --------------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred --------------ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEE
Confidence 124567899999999999999999999999999887777653 344688888877643 45544
Q ss_pred ec--CCCcEEEEEcCCCCEEEEEecCCCc--------------------ceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 230 AS--EDLFIDISNVHTGRTVHQIPCRAAM--------------------NSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 230 ~s--~d~~i~iw~~~~~~~~~~~~~~~~i--------------------~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
++ ..+.|.+|+..+|.....+-...+. ....+.-.+..+.+||.|..++-||.
T Consensus 1259 ~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 44 5788999999998654443222111 12333334567788888876665554
No 197
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.69 E-value=3.2e-16 Score=133.85 Aligned_cols=204 Identities=23% Similarity=0.348 Sum_probs=142.3
Q ss_pred cccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCc---eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 20 KKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 20 ~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
...|+.+.|+| |..+||.|+.||.|++|.+..++... .....+.+|...|+++.|+|--.++|++++.|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 46799999998 56789999999999999987554322 123457889999999999998888999999999999999
Q ss_pred CCCCeeeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-eeeeecc--cceeeeeEEecCCCEEEEecCCC
Q 022716 96 ARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKF--GYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 96 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
+.+......+ .+.+.+..++|+|+|+.+++.+.||+++++..++.. ++++.+- +..-..+.|
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~w-------------- 772 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILW-------------- 772 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEE--------------
Confidence 9988654444 356678899999999999999999999999988653 3333221 111122333
Q ss_pred CEEEEEECCCCCEEEEecCC----CcEEEEeCCCC--EEEEEeeccCCC-eeEEEEccCC-CEEEEecCCCcEEEEEcCC
Q 022716 172 GCYCIAIDPMGRYFAVGSAD----SLVSLWDISEM--LCVRTFTKLEWP-VRTISFSHTG-DYIASASEDLFIDISNVHT 243 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d----~~i~iwd~~~~--~~~~~~~~~~~~-v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~ 243 (293)
--+|+++++.+.| ..|.+||.++. ..+.+..-...+ +.-=.|.+|. ..+++|-.|.+|++|.+..
T Consensus 773 -------acdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 773 -------ACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred -------EecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 2356665555443 56888887542 223222111111 1111234454 4678899999999998754
Q ss_pred C
Q 022716 244 G 244 (293)
Q Consensus 244 ~ 244 (293)
.
T Consensus 846 e 846 (1012)
T KOG1445|consen 846 E 846 (1012)
T ss_pred C
Confidence 3
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=6.1e-15 Score=129.16 Aligned_cols=228 Identities=17% Similarity=0.200 Sum_probs=154.0
Q ss_pred CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee--e-----eeeecCceEEE
Q 022716 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS--Q-----QAELSGENINI 114 (293)
Q Consensus 42 g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~-----~~~~~~~~~~~ 114 (293)
+.+.+|++.....+. ..+. -...|.++.|+|....+++.|..+|+|.+||++.+... . ...+...+..+
T Consensus 222 ~~~~vW~~~~p~~Pe---~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE---LVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCce---EEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 478899997653222 2222 35679999999999999999999999999999876541 1 12234456667
Q ss_pred EEcCCC--CEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecC
Q 022716 115 TYKPDG--THIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSA 190 (293)
Q Consensus 115 ~~~~~~--~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~ 190 (293)
.|..+- ..+++++.||.|..|+++.... ........... .+. -......+++++|.+.. +.+++|+.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~------~~~---~~~~~~~~t~~~F~~~~p~~FiVGTe 368 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH------KGQ---QSSKAVGATSLKFEPTDPNHFIVGTE 368 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc------ccc---ccccccceeeEeeccCCCceEEEEcC
Confidence 776433 4599999999999998876443 11111110000 000 01123356788888764 67999999
Q ss_pred CCcEEEEe---CCCCE-----EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC-CCCEEEEEecCC-CcceeE
Q 022716 191 DSLVSLWD---ISEML-----CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH-TGRTVHQIPCRA-AMNSVE 260 (293)
Q Consensus 191 d~~i~iwd---~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~~~-~i~~~~ 260 (293)
+|.|.--+ ++... .+..+..|..+|.++.++|-+..+...+.|-+++||.-. .-..+..+.... .+.+++
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeE
Confidence 99987733 22222 122455678899999999998776655559999999976 344444444333 489999
Q ss_pred ECCCC-CeEEEEEcCCCCCCCCc
Q 022716 261 WNPKY-NLLAYAGDDKNKYQADE 282 (293)
Q Consensus 261 ~sp~~-~~la~~~~d~~~~~~~~ 282 (293)
|||.- ..||++..|+++.+||-
T Consensus 449 WSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 449 WSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred EcCcCceEEEEEcCCCceehhhh
Confidence 99955 78888888988887764
No 199
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=1.7e-15 Score=120.12 Aligned_cols=257 Identities=14% Similarity=0.277 Sum_probs=174.0
Q ss_pred cccEEEEEECCCCCeEEE-EeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 20 KKKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
-..|.-+.|..|..+++. +..|+.|.+|++...+ ...+...-.+++.+++|+|++..+|.+...|..|.+|.+.+
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe----w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t 123 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE----WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT 123 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce----eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc
Confidence 357888899988877664 5668899999986432 22233344677899999999888999999999999999988
Q ss_pred CeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc---ceeeeecc-cceeeeeEEecCCCEEEEecC-----
Q 022716 99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF---KPIHRRKF-GYEVNEIAWNMTGEMFFLTTG----- 169 (293)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~---~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~----- 169 (293)
..+.....-+.....++|+|||++.+..+.-.....+.+-.. ..++.... ..+...+.|+|+|..+.+...
T Consensus 124 ~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk 203 (447)
T KOG4497|consen 124 QKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK 203 (447)
T ss_pred ceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe
Confidence 766544333444567899999999888875322111111111 11111111 234566889999887664332
Q ss_pred ------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE--------------------------------------
Q 022716 170 ------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV-------------------------------------- 205 (293)
Q Consensus 170 ------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~-------------------------------------- 205 (293)
.-++..++++|.++++++|+.|+.+++-+--+....
T Consensus 204 v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~ 283 (447)
T KOG4497|consen 204 VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTD 283 (447)
T ss_pred eeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCc
Confidence 245778999999999999999999888552211110
Q ss_pred ----------------------EEee------ccCCCeeEEEEccCCCEEEEecCC--CcEEEEEcCCCCEEEEEecCCC
Q 022716 206 ----------------------RTFT------KLEWPVRTISFSHTGDYIASASED--LFIDISNVHTGRTVHQIPCRAA 255 (293)
Q Consensus 206 ----------------------~~~~------~~~~~v~~l~~sp~~~~l~s~s~d--~~i~iw~~~~~~~~~~~~~~~~ 255 (293)
..++ .....+.-++||+|..++||-.+. +.+-+||++..+....+-.+.+
T Consensus 284 ~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~p 363 (447)
T KOG4497|consen 284 LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHP 363 (447)
T ss_pred cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccc
Confidence 0000 001124558999999999997654 5688999987665445556778
Q ss_pred cceeEECCCCCeEEEEEcCCCCCCC
Q 022716 256 MNSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 256 i~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
|+...|+|....|+.+....-+|.|
T Consensus 364 iraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred eeEEEeCCCCceEEEEcCCceEEEE
Confidence 9999999999888887655444443
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=5.8e-16 Score=129.84 Aligned_cols=177 Identities=14% Similarity=0.270 Sum_probs=137.3
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+....|.+.|.|-.|+|||.-|+|++.||.|++|.-.. -. ...+.....+|++++|.|+..+.+++.+.. +.
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG----ML-RStl~Q~~~~v~c~~W~p~S~~vl~c~g~h--~~ 169 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG----ML-RSTVVQNEESIRCARWAPNSNSIVFCQGGH--IS 169 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----hH-HHHHhhcCceeEEEEECCCCCceEEecCCe--EE
Confidence 355779999999999999999999999999999997532 11 112334467899999999888888876644 44
Q ss_pred EEeCCCCee-eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC--
Q 022716 93 LWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-- 169 (293)
Q Consensus 93 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 169 (293)
+=.+..... ++--.+.+.+.++.|++....+++|++|-+.++||...........+..++.+++|+|+ +.+.+.+.
T Consensus 170 IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt 248 (737)
T KOG1524|consen 170 IKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNT 248 (737)
T ss_pred EeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeee
Confidence 444544433 33334567788999999999999999999999999876665555667889999999999 55554443
Q ss_pred -------CCCEEEEEECCCCCEEEEecCCCcEEEE
Q 022716 170 -------NAGCYCIAIDPMGRYFAVGSADSLVSLW 197 (293)
Q Consensus 170 -------~~~~~~~~~~~~~~~l~~gs~d~~i~iw 197 (293)
.+.+..++|++||..+++|+..|.+.+-
T Consensus 249 ~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 249 ARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 3578999999999999999999987654
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.9e-15 Score=119.18 Aligned_cols=186 Identities=17% Similarity=0.313 Sum_probs=132.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeeeeeecC-ceEEEEEcC--CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716 80 DLIATASGDKTVRLWDARSGKCSQQAELSG-ENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA 156 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~ 156 (293)
..++.+-..|.|++||..+++.+..+.... ....++|.. ....+.+++.||+|++||+|......++.+..
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~------ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQ------ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccC------
Confidence 456777779999999999887766655432 333566654 45689999999999999999866444332211
Q ss_pred EecCCCEEEEecCCCCEEEEEECCCCCEEEEecC----CCcEEEEeCCCCEE-EEE-eeccCCCeeEEEEccCC-CEEEE
Q 022716 157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA----DSLVSLWDISEMLC-VRT-FTKLEWPVRTISFSHTG-DYIAS 229 (293)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~----d~~i~iwd~~~~~~-~~~-~~~~~~~v~~l~~sp~~-~~l~s 229 (293)
.. ..+..|++..-.++.+++|+. +-.|.+||.+.... +.. ...|...|++|+|+|+. ..|+|
T Consensus 115 ---~~--------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 115 ---QS--------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred ---CC--------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEe
Confidence 10 123456666667778888764 56799999987654 443 34688999999999975 68899
Q ss_pred ecCCCcEEEEEcCCCC----EEEEEecCCCcceeEECCCC--CeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 230 ASEDLFIDISNVHTGR----TVHQIPCRAAMNSVEWNPKY--NLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 230 ~s~d~~i~iw~~~~~~----~~~~~~~~~~i~~~~~sp~~--~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
||-||.|.++|+.... +++.+.+..+|..+.|+.++ +++..+-+ +.+.+|.+|
T Consensus 184 GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~---------Etf~~~ele 242 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHM---------ETFAIYELE 242 (376)
T ss_pred ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEcc---------CceeEEEcc
Confidence 9999999999997542 23456677789999998877 55555543 457777765
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=5.5e-15 Score=127.11 Aligned_cols=227 Identities=15% Similarity=0.223 Sum_probs=160.1
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 101 (293)
.|+.++|-|||.+|+.+. +..+.+||..... ....+++|++-|++++|+.+ +..++||+.|+.|.+|+.+-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~----llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT----LLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEG- 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc----cccccccccceEEEEEEccC-CceeccCCCceeEEEecccccc-
Confidence 899999999999987765 4678899987532 23368899999999999976 5789999999999999865432
Q ss_pred eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC
Q 022716 102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM 181 (293)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (293)
...+.+...+.+|.|.|-...|++++- +..-+|....+...+. + ....+.+.+|..|
T Consensus 87 ~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~-k---------------------ss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH-K---------------------SSSRIICCSWTND 143 (1081)
T ss_pred eeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh-h---------------------hheeEEEeeecCC
Confidence 223445667779999999888988874 3456777654332211 0 1234567788899
Q ss_pred CCEEEEecCCCcEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCC-----EEEEecCCCcEEEEEcCCCCEEEE-EecC
Q 022716 182 GRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGD-----YIASASEDLFIDISNVHTGRTVHQ-IPCR 253 (293)
Q Consensus 182 ~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~-----~l~s~s~d~~i~iw~~~~~~~~~~-~~~~ 253 (293)
|.+++.|-.+|+|.|=+-..-+. +..--+...+|.+++|+|... .++...-..++.++.+ +|+.+.+ ....
T Consensus 144 GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~ 222 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALN 222 (1081)
T ss_pred CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCC
Confidence 99999999999999986432222 222223567999999999753 4555555566666655 3444431 1111
Q ss_pred CCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 254 AAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 254 ~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
=.-.++.+-|+|.++..||.|+.+.+
T Consensus 223 FdP~CisYf~NGEy~LiGGsdk~L~~ 248 (1081)
T KOG1538|consen 223 FDPCCISYFTNGEYILLGGSDKQLSL 248 (1081)
T ss_pred CCchhheeccCCcEEEEccCCCceEE
Confidence 23458899999999999999985443
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.1e-14 Score=124.42 Aligned_cols=248 Identities=19% Similarity=0.273 Sum_probs=163.5
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC--CEEEEEeCCCeEEEEeCCCCee
Q 022716 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA--DLIATASGDKTVRLWDARSGKC 101 (293)
Q Consensus 24 ~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~ 101 (293)
..-.||+|++.++... +..|+||......+ ...+.+|..++..+.+.|... ..+++++.||.|++||...+..
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~----i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGEC----ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhh----hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 3456888988776444 68899998875322 125789999999999988765 4677999999999999999999
Q ss_pred eeeeeecCceEEEEEcCC----CCEEEEEeCCCeE------------EEEEccccceee-e-ecccceeeeeEEecCCCE
Q 022716 102 SQQAELSGENINITYKPD----GTHIAVGNRDDEL------------TILDVRKFKPIH-R-RKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~d~~i------------~l~d~~~~~~~~-~-~~~~~~~~~v~~~~~~~~ 163 (293)
...+....++..+.+.|. ...+..+..|-.+ +-+.+.+..... . .+....-+.++.++.++.
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 888887777766555331 1112122222111 111111100000 0 000000122233333222
Q ss_pred EEE------------------ec------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC----CEEEEEeeccCCCe
Q 022716 164 FFL------------------TT------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPV 215 (293)
Q Consensus 164 ~~~------------------~~------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~----~~~~~~~~~~~~~v 215 (293)
..+ .. |...++|.+++|+++++|+|..||.|.+|.--. ......+.=|...|
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 111 11 122368899999999999999999999995321 12233455577899
Q ss_pred eEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCC
Q 022716 216 RTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNK 277 (293)
Q Consensus 216 ~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~ 277 (293)
.+++|+++|.+|.+|+..+.+-+|...+++ ...++ ..++|..+.+|||+++.+..-.|..+
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 999999999999999999999999999988 22333 46789999999999988887777544
No 204
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.1e-14 Score=121.49 Aligned_cols=248 Identities=17% Similarity=0.208 Sum_probs=175.5
Q ss_pred CccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCC--------Ccee------------------EEEeeC----C-
Q 022716 18 GHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGH--------GKVK------------------DIELRG----H- 65 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~--------~~~~------------------~~~~~~----h- 65 (293)
+|...-+.+..+|||+++ |||-.--.|++||+..-.. ..+. .+.+.+ |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 677888899999999985 6888899999999863210 0000 011111 1
Q ss_pred ----cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEcccc
Q 022716 66 ----ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKF 140 (293)
Q Consensus 66 ----~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~ 140 (293)
.....+++++-...+++ .++....|.-.++..|+.+..+... +...++...+-..+|++|+.+|.+-.||.|..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 11233455554445555 4555566777799999988877766 45567888888889999999999999999987
Q ss_pred ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEE
Q 022716 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTIS 219 (293)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~ 219 (293)
...........|... |. ......++++.|+.+|-.+++|+.+|.+.|||++...++.. -.....||..+.
T Consensus 208 srv~~l~~~~~v~s~---pg------~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSH---PG------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred hhheeeecccccCCC---cc------ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence 766554433322211 00 01123478999999999999999999999999988765532 233456899999
Q ss_pred EccCCCEEEEecCC-CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 220 FSHTGDYIASASED-LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 220 ~sp~~~~l~s~s~d-~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
|.+.++.=...+.| ..++|||-.+|+....+.....++.+++-|+..++.+|-.+.
T Consensus 279 ~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 279 WQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred ccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 98874443333444 558999999999887777777899999999999999998764
No 205
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.9e-13 Score=118.11 Aligned_cols=206 Identities=15% Similarity=0.173 Sum_probs=134.2
Q ss_pred cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe--CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC
Q 022716 43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120 (293)
Q Consensus 43 ~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (293)
.|.+||.+... . ..+..+...+....|+|++..++++.. .+..+.+||+.+++........+.....+|+|||
T Consensus 180 ~l~~~d~dg~~--~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 180 ELRVSDYDGYN--Q---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred eEEEEcCCCCC--C---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence 67778776321 1 123345667889999998755444332 3457899999888655444445555678999999
Q ss_pred CEEEEEe-CCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC-Cc--E
Q 022716 121 THIAVGN-RDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD-SL--V 194 (293)
Q Consensus 121 ~~l~~~~-~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-~~--i 194 (293)
+.|+... .++ .|.+||+++....+.. .+........|+|+++.|+..+.+ +. |
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt---------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~I 313 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVT---------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQV 313 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEcc---------------------CCCCCcCceEECCCCCEEEEEeCCCCCceE
Confidence 9888653 344 5888898765432211 112233467888999888766654 44 4
Q ss_pred EEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEE
Q 022716 195 SLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 195 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 271 (293)
.++|+..+.. ..+...........|+|||++++..+.+ ..|++||+.++.. ..+.......+..|+|||.+|+++
T Consensus 314 y~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 314 YKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDTFLDETPSIAPNGTMVIYS 391 (429)
T ss_pred EEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCCCCCCCceECCCCCEEEEE
Confidence 4446666543 3343333445678899999999776543 3588899988763 333322234578999999999999
Q ss_pred EcCCC
Q 022716 272 GDDKN 276 (293)
Q Consensus 272 ~~d~~ 276 (293)
+.++.
T Consensus 392 s~~~~ 396 (429)
T PRK03629 392 SSQGM 396 (429)
T ss_pred EcCCC
Confidence 98764
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.3e-15 Score=122.74 Aligned_cols=188 Identities=18% Similarity=0.214 Sum_probs=130.0
Q ss_pred eEEEEcCCCCCEEEEEeCCCeEEEEe-CCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716 70 DQLCWDPKHADLIATASGDKTVRLWD-ARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148 (293)
Q Consensus 70 ~~~~~~~~~~~~l~s~~~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~ 148 (293)
..+++++++ .++++++.||.+|+|+ ..........+++..+..+.|+|||+.|++.+.| ...+|+.++...+.....
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 457888764 6899999999999999 4444445555678888999999999999999999 899999988755444321
Q ss_pred cceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-----CEEEEecCCCcEEEEeCCCC-----EEEEEeeccCCCeeEE
Q 022716 149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-----RYFAVGSADSLVSLWDISEM-----LCVRTFTKLEWPVRTI 218 (293)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~gs~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~l 218 (293)
.. ++ -....+.|..++ +.++.-..-+.|+.||+..+ .+..+...-...|.++
T Consensus 226 ~~----------k~--------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl 287 (398)
T KOG0771|consen 226 FS----------KD--------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSL 287 (398)
T ss_pred cc----------cc--------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeE
Confidence 00 00 001112222222 22233333445666655322 1222222233579999
Q ss_pred EEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcCCCC
Q 022716 219 SFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNK 277 (293)
Q Consensus 219 ~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d~~~ 277 (293)
+.+++|+++|.|+.||.|-|++..+-+.++-.+ |..-|+.|.|+|+.+++++.+.|..+
T Consensus 288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~ 348 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEA 348 (398)
T ss_pred EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCce
Confidence 999999999999999999999998877665443 44579999999999999998877533
No 207
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=2.3e-14 Score=111.95 Aligned_cols=241 Identities=22% Similarity=0.324 Sum_probs=161.5
Q ss_pred cEEEEEECC--C-CCeEEEEeC----CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC----CCEEEEEeCCCe
Q 022716 22 KVHSVAWNC--T-GTKLASGSV----DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH----ADLIATASGDKT 90 (293)
Q Consensus 22 ~v~~l~~s~--~-~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~----~~~l~s~~~d~~ 90 (293)
++.++.|+. + ..+||.|+. .+.|.|-.++......... .-..|.-+++.+.|.|+. .++|+|++ ..
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~-a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED-ANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc-CCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 688889983 3 346888875 5788887776432222111 113688889999999864 35676544 67
Q ss_pred EEEEeCCCCe--eee--------eeeecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716 91 VRLWDARSGK--CSQ--------QAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM 159 (293)
Q Consensus 91 i~vwd~~~~~--~~~--------~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~ 159 (293)
+|+|.+...+ ... ..++..+.++..|.. +-+++.+.+-|-++.+||++....-..
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~v-------------- 188 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTV-------------- 188 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccce--------------
Confidence 9999886432 111 112233445666653 557888999999999999987522000
Q ss_pred CCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEE---EEEeeccCCCeeEEEEccC-CCEEEEecCCC
Q 022716 160 TGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC---VRTFTKLEWPVRTISFSHT-GDYIASASEDL 234 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~sp~-~~~l~s~s~d~ 234 (293)
..-+..|+..++.++|...+ +.+|+.+.||.+++||++..+. +++-.....+..-++|+++ -+++||-..|.
T Consensus 189 ---kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 189 ---KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred ---eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 01234566677778887754 5789999999999999987542 2222222457788888875 46889988774
Q ss_pred -cEEEEEcCCCC-EEEEE-ecCCCcceeEECCCC-CeEEEEEcCCCCCCCCc
Q 022716 235 -FIDISNVHTGR-TVHQI-PCRAAMNSVEWNPKY-NLLAYAGDDKNKYQADE 282 (293)
Q Consensus 235 -~i~iw~~~~~~-~~~~~-~~~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~ 282 (293)
.|.|-|++... .+..+ .|+..|+.|+|.|.. ..|+++|+|-..-+||-
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence 48999988653 34444 467789999999965 89999999865554443
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=8.2e-16 Score=126.79 Aligned_cols=223 Identities=15% Similarity=0.167 Sum_probs=171.7
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 101 (293)
.-..+.++.+|+.|+.|+..|.|-.+|..+.. ....+ .-...|.++.|... . .++.......+.|||- .|..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei-~v~Etv~Dv~~LHn-e-q~~AVAQK~y~yvYD~-~GtE 202 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEI-NVMETVRDVTFLHN-E-QFFAVAQKKYVYVYDN-NGTE 202 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccce----eeeee-ehhhhhhhhhhhcc-h-HHHHhhhhceEEEecC-CCcE
Confidence 45678889999999999999999999875421 11111 12355778888653 2 3455677888999984 4555
Q ss_pred eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC
Q 022716 102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM 181 (293)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (293)
+..+.....+..+.|-|..-+|++++..|-++..|+..++.+..... +.+.+..+.-+|-
T Consensus 203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t--------------------~~G~~~vm~qNP~ 262 (545)
T KOG1272|consen 203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT--------------------GAGRTDVMKQNPY 262 (545)
T ss_pred EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc--------------------cCCccchhhcCCc
Confidence 55555567777889999888889999999999999887765543322 2233344566788
Q ss_pred CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEE
Q 022716 182 GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW 261 (293)
Q Consensus 182 ~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~ 261 (293)
+-.+-+|...|+|.+|.....+++-.+--|..+|.+|++.++|+|+||.+.|..++|||++....++.+...-+...+++
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~ 342 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSL 342 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccc
Confidence 88899999999999999988888877888999999999999999999999999999999999888777766567788999
Q ss_pred CCCCCeEEEEE
Q 022716 262 NPKYNLLAYAG 272 (293)
Q Consensus 262 sp~~~~la~~~ 272 (293)
|-.|.+.++-|
T Consensus 343 SqkglLA~~~G 353 (545)
T KOG1272|consen 343 SQKGLLALSYG 353 (545)
T ss_pred ccccceeeecC
Confidence 98875544444
No 209
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-13 Score=120.15 Aligned_cols=222 Identities=18% Similarity=0.238 Sum_probs=141.6
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
+.++.+...+.+.+|+|||+.|+..+.+ ..|.+||+.... .. .+......+....|+|++..++++.+.++.
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---RR--VVANFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEEccCCC
Confidence 4456778889999999999999887753 358999987432 11 222233445678999987666667788888
Q ss_pred EEEEe--CCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CCeEEEEEcc--ccceeeeecccceeeeeEEecCCCEEE
Q 022716 91 VRLWD--ARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDVR--KFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 91 i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
..+|. +..+.........+......|+|||+.++..+. ++...+|.+. +....+ +.
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~----------lt--------- 324 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR----------VT--------- 324 (427)
T ss_pred ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE----------Ee---------
Confidence 77765 444443222222333456789999998886654 4555666543 222111 10
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCC---cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEEEE
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDIS 239 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~iw 239 (293)
.........+|+|+|++++..+.++ .|.+||+..+... .+... .......|+|||++|+..+.++ .+++.
T Consensus 325 --~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 325 --FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAV 400 (427)
T ss_pred --cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence 0111122467899999988776554 5999999877543 33322 2346789999999988877543 25555
Q ss_pred EcCCCCEEEEEec-CCCcceeEECCC
Q 022716 240 NVHTGRTVHQIPC-RAAMNSVEWNPK 264 (293)
Q Consensus 240 ~~~~~~~~~~~~~-~~~i~~~~~sp~ 264 (293)
+. +++....+.. .+.+...+|+|-
T Consensus 401 ~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 401 SS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EC-CCCceEEeecCCCCCCCCccCCC
Confidence 55 4555555543 355778899984
No 210
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.7e-15 Score=124.51 Aligned_cols=199 Identities=25% Similarity=0.349 Sum_probs=122.3
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC------CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------HGKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
+.+|-+|.++|.|+...+.+..+.+|+-||+|+.|++..+. .+....-.+.||.+.|+.+.+++. .+.|++++
T Consensus 337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-~~~Llscs 415 (577)
T KOG0642|consen 337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-KDRLLSCS 415 (577)
T ss_pred eEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc-ccceeeec
Confidence 45678999999999999999999999999999999764321 112223457899999999999886 45688999
Q ss_pred CCCeEEEEeCCCCee--eeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeee--------cccceeeee
Q 022716 87 GDKTVRLWDARSGKC--SQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRR--------KFGYEVNEI 155 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~--------~~~~~~~~v 155 (293)
.||+++.|+...... ...-.-++.+.++.+.... ...++...-+.-.+.++.....+... .-...++.+
T Consensus 416 ~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 416 SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 999999999765543 1111122333344432211 11111111111111111110000000 001234445
Q ss_pred EEecCCCEEEE---------------------ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC
Q 022716 156 AWNMTGEMFFL---------------------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 212 (293)
Q Consensus 156 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~ 212 (293)
+|++.....+. ..+...++++++.|+|.+|++|+.|+.+++|.+....++.....|.
T Consensus 496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred EecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 55554433221 1123457789999999999999999999999987776666655554
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.9e-13 Score=103.41 Aligned_cols=242 Identities=16% Similarity=0.252 Sum_probs=156.0
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC----CceeEEEeeCCc-----CCeeEEEEcCCCCCEE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH----GKVKDIELRGHA-----DSVDQLCWDPKHADLI 82 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~----~~~~~~~~~~h~-----~~i~~~~~~~~~~~~l 82 (293)
......+|..+|..++|. ..+|++|+ ||.|+-|...+... ........+.|. ..|+++...|....+
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi- 129 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI- 129 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-
Confidence 344457999999999998 45677776 59999987653221 122222223333 458899888875554
Q ss_pred EEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716 83 ATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 83 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (293)
+.++.|+.+.-||+++|+....+..+.. +.+++-......+++|++||++++||.++.+.+..+..-..-+.
T Consensus 130 ~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~------- 202 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNL------- 202 (325)
T ss_pred EEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhh-------
Confidence 5667999999999999998887775544 44555434456799999999999999999877665431100000
Q ss_pred CEEEEecC-CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 162 EMFFLTTG-NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
+-.+ ...+.+++ -+..++++|+. ..+.+|+++..++...|. ...++..+.|- ...++++++.+.+.-|.
T Consensus 203 ----lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 203 ----LRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYT 272 (325)
T ss_pred ----cCcccCceeEEEe--ccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeee--cceEEEeccccceeeee
Confidence 0001 11233444 45678888764 468999999988877663 45688889884 44788888888888887
Q ss_pred cCCCCEEEEEecCC-CcceeEECCC-CCeEEEEEcCC
Q 022716 241 VHTGRTVHQIPCRA-AMNSVEWNPK-YNLLAYAGDDK 275 (293)
Q Consensus 241 ~~~~~~~~~~~~~~-~i~~~~~sp~-~~~la~~~~d~ 275 (293)
.. |...-+.+... ...+..|+.. .++|..+|...
T Consensus 273 l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~ 308 (325)
T KOG0649|consen 273 LN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSN 308 (325)
T ss_pred ec-cEEEEeccCCccceeeecccCCceEEEEecccce
Confidence 63 22222333222 2344555432 45666666543
No 212
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.64 E-value=3.2e-14 Score=111.07 Aligned_cols=203 Identities=23% Similarity=0.356 Sum_probs=142.0
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE---eeCCcCCeeEEEEcC-CCCCEEEEEeCCCeEEE
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE---LRGHADSVDQLCWDP-KHADLIATASGDKTVRL 93 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~---~~~h~~~i~~~~~~~-~~~~~l~s~~~d~~i~v 93 (293)
.|-+.|.|+.|.|++..|++-. |..|.+|++++...- ...+. -..|....++-+|+| -+++.++ ...|+++..
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~ 197 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQF 197 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEE-EeCCCcEEE
Confidence 4456999999999999988766 899999999854321 11111 112455667778988 3345554 467899999
Q ss_pred EeCCCCeeeeeee-ec-CceEEEEEcCCCC-EEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecC
Q 022716 94 WDARSGKCSQQAE-LS-GENINITYKPDGT-HIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 94 wd~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
||+++-.+...++ .+ ..+..+.|.|+.. +|++++.|+.+++||.|+.+ |+..+ ..+
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el--------------------~~H 257 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL--------------------PGH 257 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc--------------------CCC
Confidence 9999776554443 22 3467899999765 57888899999999998643 33322 223
Q ss_pred CCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCC-----------------------------EEEEEeeccCCCeeEEE
Q 022716 170 NAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEM-----------------------------LCVRTFTKLEWPVRTIS 219 (293)
Q Consensus 170 ~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~ 219 (293)
..-+.++.|+|. ..++++|+.|..|.+|....- ..+.++..|+..|.+++
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a 337 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA 337 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEe
Confidence 344567777776 456778888888888864211 12346677899999999
Q ss_pred EccCCCE-EEEecCCCcEEEEEcCC
Q 022716 220 FSHTGDY-IASASEDLFIDISNVHT 243 (293)
Q Consensus 220 ~sp~~~~-l~s~s~d~~i~iw~~~~ 243 (293)
||.-..+ +|+-|.||.+.|-.+..
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCCh
Confidence 9987776 58889999999988754
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=7.9e-15 Score=123.08 Aligned_cols=199 Identities=19% Similarity=0.292 Sum_probs=137.5
Q ss_pred CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC--CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee
Q 022716 30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG--HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL 107 (293)
Q Consensus 30 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 107 (293)
|.+-.|+.|=.-|.|.+.|..... ......... .+..|+++.|-|-+..+++.+-.+|.+.++|..- ..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~--~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~ 253 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFE--VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VC 253 (636)
T ss_pred CCCcceEEeeccCceEEecchhhH--HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cc
Confidence 456667788888888887764321 111111111 2367999999987777787788899999998621 01
Q ss_pred cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716 108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187 (293)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (293)
.....+....+++..+.....-+. .+..|+.. | ....+.+...+|+|||++||+
T Consensus 254 ~~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~-----------w---------~~~~g~in~f~FS~DG~~LA~ 307 (636)
T KOG2394|consen 254 GATAPSYQALKDGDQFAILTSKSK------KTRNPVAR-----------W---------HIGEGSINEFAFSPDGKYLAT 307 (636)
T ss_pred cCCCCcccccCCCCeeEEeeeecc------ccCCccce-----------e---------EeccccccceeEcCCCceEEE
Confidence 111112223345555544432111 01122111 1 112335667899999999999
Q ss_pred ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE-EecCCCcceeEECC
Q 022716 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNP 263 (293)
Q Consensus 188 gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~~~~i~~~~~sp 263 (293)
.+.||.++|||..+++.+..++.+-....+++|||||+|+++|++|-.|.||.+..++.+-. -.|++.|..|+|.|
T Consensus 308 VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 308 VSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999888777777778999999999999999999999999999999888754 35677899999985
No 214
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.1e-13 Score=124.72 Aligned_cols=234 Identities=18% Similarity=0.258 Sum_probs=157.7
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC---cCCeeEEEE-cCCCCCEEEEEeCCCeEE
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH---ADSVDQLCW-DPKHADLIATASGDKTVR 92 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h---~~~i~~~~~-~~~~~~~l~s~~~d~~i~ 92 (293)
++...+-..+.|+|-..+++++...-.|++||.+.... ...+..+ ...|+.+.+ +..+..++++|+.||.||
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~----l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRL----LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCce----eccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence 34445677888999999999999899999999875321 1112221 245777776 445567899999999999
Q ss_pred EEeCCCC-----eeeeeee-ec-------CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716 93 LWDARSG-----KCSQQAE-LS-------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM 159 (293)
Q Consensus 93 vwd~~~~-----~~~~~~~-~~-------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~ 159 (293)
||+--.. +.+..+. .. +...-+.|....-+|++++.-..|++||...-...+....+.
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s--------- 1207 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS--------- 1207 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC---------
Confidence 9974221 2222211 11 112235666655566666667899999987655444433221
Q ss_pred CCCEEEEecCCCCEEEEEEC-CCCCEEEEecCCCcEEEEeCCCC---EEEEEeeccCCC--eeEEEEccCCC-EEEEecC
Q 022716 160 TGEMFFLTTGNAGCYCIAID-PMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLEWP--VRTISFSHTGD-YIASASE 232 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~gs~d~~i~iwd~~~~---~~~~~~~~~~~~--v~~l~~sp~~~-~l~s~s~ 232 (293)
+..++++.-+ +.|+.+++|-.||.|++||.+.- ..+...+.|... |..+.+.+.|- .|++|+.
T Consensus 1208 ----------~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1208 ----------STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred ----------CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc
Confidence 1122333222 34799999999999999997642 234556677665 99999998775 4999999
Q ss_pred CCcEEEEEcCCCCEE--EEEe----cCCCcceeEECCCCCeEEEEEc
Q 022716 233 DLFIDISNVHTGRTV--HQIP----CRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 233 d~~i~iw~~~~~~~~--~~~~----~~~~i~~~~~sp~~~~la~~~~ 273 (293)
||.|++||++..... .... ..+.++++.-|++...+|+|+.
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 999999999874221 1121 2335899999999999999986
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5.1e-13 Score=116.64 Aligned_cols=191 Identities=19% Similarity=0.197 Sum_probs=123.0
Q ss_pred eeCCcCCeeEEEEcCCCCCEEEEEeC--CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEc-
Q 022716 62 LRGHADSVDQLCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDV- 137 (293)
Q Consensus 62 ~~~h~~~i~~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~- 137 (293)
+..+...+.+.+|+|++..++++... ...|.+||+.+++........+.....+|+|||+.++. .+.++...+|.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 34567788899999986544443322 24599999988876544445556667899999998875 556777666654
Q ss_pred -cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeC--CCCEEEEEeeccCC
Q 022716 138 -RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDI--SEMLCVRTFTKLEW 213 (293)
Q Consensus 138 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~--~~~~~~~~~~~~~~ 213 (293)
......+ +..+........|+|+|+.++..+. ++...||.+ ..+.. ..+.....
T Consensus 271 ~~~~~~~~---------------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~ 328 (427)
T PRK02889 271 ADGSGLRR---------------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGS 328 (427)
T ss_pred CCCCCcEE---------------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCC
Confidence 3222111 1111222345678999988776554 456666654 44432 22222222
Q ss_pred CeeEEEEccCCCEEEEecCCC---cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 214 PVRTISFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.....+|+|+|++|+..+.++ .|++||+.+++.. .+..........|+|++.+|++++.++
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecC
Confidence 344678999999998776554 5999999887643 333333456889999999999998765
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.4e-13 Score=118.06 Aligned_cols=204 Identities=18% Similarity=0.152 Sum_probs=132.6
Q ss_pred CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC---CCeEEEEeCCCCeeeeeeeecCceEEEEEcC
Q 022716 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKP 118 (293)
Q Consensus 42 g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 118 (293)
..|.+||.+... . ..+..+...+....|+|++. .|+..+. +..|.+||+.+++........+.....+|+|
T Consensus 184 ~~l~i~D~~g~~---~--~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDGYN---P--QTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCCCC---c--eEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence 368888875321 1 23445667788999999865 5555553 3469999998877654434445555789999
Q ss_pred CCCEEEEE-eCCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCc-
Q 022716 119 DGTHIAVG-NRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSL- 193 (293)
Q Consensus 119 ~~~~l~~~-~~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~- 193 (293)
||+.++.. +.++ .|.+||+.+....... .+.......+|+|+++.++..+. +|.
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt---------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~ 316 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLTRLT---------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRP 316 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeEECc---------------------cCCCCccceEECCCCCEEEEEECCCCCc
Confidence 99987643 4444 5888888765432211 11112235678899988876654 444
Q ss_pred -EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEE
Q 022716 194 -VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLA 269 (293)
Q Consensus 194 -i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la 269 (293)
|.++|+..+.. ..+..........+|+|+|++++..+.++ .|.+||..+++.. .+..........|+|+|++++
T Consensus 317 ~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~ 394 (433)
T PRK04922 317 QIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVL 394 (433)
T ss_pred eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEE
Confidence 66667766543 22322333445689999999998765432 5899999887654 443333456789999999999
Q ss_pred EEEcC
Q 022716 270 YAGDD 274 (293)
Q Consensus 270 ~~~~d 274 (293)
+.+.+
T Consensus 395 ~~s~~ 399 (433)
T PRK04922 395 YATRE 399 (433)
T ss_pred EEEec
Confidence 88875
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.1e-12 Score=114.99 Aligned_cols=204 Identities=15% Similarity=0.169 Sum_probs=133.5
Q ss_pred cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCC
Q 022716 43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---GDKTVRLWDARSGKCSQQAELSGENINITYKPD 119 (293)
Q Consensus 43 ~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 119 (293)
.|.++|.+.. . ...+..|...+....|+|++.. |+..+ .+..|.+||+.+++........+.....+|+||
T Consensus 183 ~l~~~d~dg~---~--~~~lt~~~~~v~~p~wSpDG~~-lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGA---N--VRYLTDGSSLVLTPRFSPNRQE-ITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCC---C--cEEEecCCCCeEeeEECCCCCE-EEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCC
Confidence 6667776432 1 1235567788999999998654 44443 256899999988876544445556667899999
Q ss_pred CCEEEE-EeCCCe--EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--c
Q 022716 120 GTHIAV-GNRDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--L 193 (293)
Q Consensus 120 ~~~l~~-~~~d~~--i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~ 193 (293)
|+.++. .+.++. |.++|+++....+.. .+........|+|+++.++..+. ++ .
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt---------------------~~~~~~~~~~~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLT---------------------DSPAIDTSPSYSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEcc---------------------CCCCccCceeEcCCCCEEEEEECCCCCCe
Confidence 998764 444554 666787665432211 11122234678888888776654 33 5
Q ss_pred EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEE
Q 022716 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAY 270 (293)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~ 270 (293)
|+++|+..+.. +.+......+....|+|+|++|+..+.+ ..|.+|+..++. .+.+.....+....|+|+|+.|++
T Consensus 316 Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 316 LYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred EEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEE
Confidence 78888776543 3344344556778899999999876643 358888875544 334433335678999999999988
Q ss_pred EEcCC
Q 022716 271 AGDDK 275 (293)
Q Consensus 271 ~~~d~ 275 (293)
.+.+.
T Consensus 394 ~~~~~ 398 (435)
T PRK05137 394 FRQTP 398 (435)
T ss_pred EEccC
Confidence 87643
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=2e-14 Score=110.79 Aligned_cols=205 Identities=18% Similarity=0.210 Sum_probs=141.0
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC---------------------Cce--eE----------------
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---------------------GKV--KD---------------- 59 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~---------------------~~~--~~---------------- 59 (293)
|...|+.+.--|+ ..|.|=+.|..+.+|++..... +.. ..
T Consensus 55 g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 55 GRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred ccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 4567888887776 5788999999999999864110 000 00
Q ss_pred -----EE-----eeCCcCCeeEEEEcCCC-C-CEEEEEeCCCeEEEEeCCCCeeee-----------eeeecCceEEEEE
Q 022716 60 -----IE-----LRGHADSVDQLCWDPKH-A-DLIATASGDKTVRLWDARSGKCSQ-----------QAELSGENINITY 116 (293)
Q Consensus 60 -----~~-----~~~h~~~i~~~~~~~~~-~-~~l~s~~~d~~i~vwd~~~~~~~~-----------~~~~~~~~~~~~~ 116 (293)
+. -.+..+.+.+..+..+. . -+++.|-++|.+.+||+.++...- ...+..++.++.|
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy 213 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY 213 (323)
T ss_pred CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence 00 00112344444432222 2 256677779999999998863211 1223456677877
Q ss_pred cCCCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEE
Q 022716 117 KPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVS 195 (293)
Q Consensus 117 ~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~ 195 (293)
.+.-..=++|+.+..+..|.++... .+... ....-.+.++.-+.+-||++.+|+++.|+.|+
T Consensus 214 as~~~rGisgga~dkl~~~Sl~~s~gslq~~-----------------~e~~lknpGv~gvrIRpD~KIlATAGWD~RiR 276 (323)
T KOG0322|consen 214 ASSCDRGISGGADDKLVMYSLNHSTGSLQIR-----------------KEITLKNPGVSGVRIRPDGKILATAGWDHRIR 276 (323)
T ss_pred chhhcCCcCCCccccceeeeeccccCccccc-----------------ceEEecCCCccceEEccCCcEEeecccCCcEE
Confidence 7654455677777788888875431 11100 01111233455677889999999999999999
Q ss_pred EEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 196 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
+|..+++..+..++.|...|++++|+|+...+|.+|.|+.|.+|++
T Consensus 277 Vyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 277 VYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999999999999985
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=3.9e-13 Score=104.25 Aligned_cols=117 Identities=24% Similarity=0.412 Sum_probs=88.1
Q ss_pred cCceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE
Q 022716 108 SGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185 (293)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (293)
.+.+..++|+|+|+.+++.. .+..+.+||++. +++.. .+......+.|+|+|+++
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~~i~~----------------------~~~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-KKIFS----------------------FGTQPRNTISWSPDGRFL 115 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-cEeEe----------------------ecCCCceEEEECCCCCEE
Confidence 45688999999999876653 567999999862 22221 122344578899999999
Q ss_pred EEecC---CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC------CCcEEEEEcCCCCEEEEE
Q 022716 186 AVGSA---DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE------DLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 186 ~~gs~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------d~~i~iw~~~~~~~~~~~ 250 (293)
++++. .|.|.+||.++.+.+.+.. | ..+..++|+|+|++|+++.. |+.++||+. .|+++...
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 98864 4679999999988887653 3 34789999999999999864 788999998 46666544
No 220
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=2.9e-14 Score=113.22 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=145.0
Q ss_pred EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 022716 25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ 104 (293)
Q Consensus 25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 104 (293)
-+.|||+|+++|+++.- .+.|=|.++-. . ..+----+.|.-+.|..+....|..+..|+.|.+|++...+.--.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq---~--~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ---L--HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhh---H--HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 46799999999999864 55555543210 0 000011245666677766544555567799999999977654333
Q ss_pred ee-ecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716 105 AE-LSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG 182 (293)
Q Consensus 105 ~~-~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (293)
+. .......+.|+|||+.++..+ -+-+|.+|.+.+.......- ....+.-++|+|+|
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~---------------------pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH---------------------PKTNVKGYAFHPDG 145 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc---------------------cccCceeEEECCCC
Confidence 32 344566789999997766555 58999999998755332211 11123457889999
Q ss_pred CEEEEecCCCcEEEEe---CCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCccee
Q 022716 183 RYFAVGSADSLVSLWD---ISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSV 259 (293)
Q Consensus 183 ~~l~~gs~d~~i~iwd---~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~ 259 (293)
++.+..+.-.....++ .+....++.+.-.....+.+.|+|||..|| +||.--..++..+...-.+..+
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe~~lG~k~v 216 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYERGLGLKFV 216 (447)
T ss_pred ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------EecchhhheeeeeeeccceeEE
Confidence 9988887653322222 223344455555556788899999998776 4554444444455555578899
Q ss_pred EECCCCCeEEEEEcCCCCCCCCc
Q 022716 260 EWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 260 ~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
+|+|-+++||.|+.|+.+++.++
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred EeccccceEEeeccchhhhhhce
Confidence 99999999999999976666544
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.8e-12 Score=104.30 Aligned_cols=242 Identities=17% Similarity=0.274 Sum_probs=155.2
Q ss_pred cccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCC----------CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-
Q 022716 20 KKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGH----------GKVKDIELRGHADSVDQLCWDPKHADLIATASG- 87 (293)
Q Consensus 20 ~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~----------~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~- 87 (293)
...|+|++|-|-+ ..|+.|.. +-|.+|..+.... ........++| .+|+++.|++++ ..+++++.
T Consensus 140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~g 216 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFG 216 (445)
T ss_pred hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccC
Confidence 3579999999976 45666664 6689998764211 11122344566 689999999885 45667665
Q ss_pred CCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCEEE
Q 022716 88 DKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 165 (293)
|..|.|||..++.+..... ..+.+.-+.|+||+.++++++-|+..++|.........+. .....++.-.|+|.|..+.
T Consensus 217 sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEE
Confidence 7889999999987765542 3345557899999999999999999999965433222222 2234678888999988766
Q ss_pred Eec-CCCCEEEEEECCCCCEEE-EecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC--------Cc
Q 022716 166 LTT-GNAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED--------LF 235 (293)
Q Consensus 166 ~~~-~~~~~~~~~~~~~~~~l~-~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--------~~ 235 (293)
+++ +...++++.|+.....+. .++....+.+-|+..-.....-.-.-.+..+++|.|.|.+||+--.. ..
T Consensus 297 f~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~ 376 (445)
T KOG2139|consen 297 FACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLH 376 (445)
T ss_pred EEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhh
Confidence 655 455677888776544433 44444445555653211100001134678999999999999886332 33
Q ss_pred EEEEEcCCCCEEEEEe----cCCCcceeEECCC
Q 022716 236 IDISNVHTGRTVHQIP----CRAAMNSVEWNPK 264 (293)
Q Consensus 236 i~iw~~~~~~~~~~~~----~~~~i~~~~~sp~ 264 (293)
|.+||....-.+.... ....-.-|.|+|.
T Consensus 377 i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl 409 (445)
T KOG2139|consen 377 ISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL 409 (445)
T ss_pred hhhhcccccCceEEEecccccCCCCceEEeeec
Confidence 5677765543333221 1223456778774
No 222
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=1.8e-12 Score=113.35 Aligned_cols=220 Identities=18% Similarity=0.233 Sum_probs=139.0
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
.+.+..+...+.+.+|+|||++|+.++.+ ..|++|++.... .. .+..+...+.+..|+|++..++++.+.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---RE--KVASFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEECCCC
Confidence 45566677789999999999999887654 479999987431 11 22334455667899998765666666554
Q ss_pred --eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716 90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 90 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
.|.+||+.++................|+|||+.++..+. ++ .+.++|+.+.....
T Consensus 257 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-------------------- 316 (417)
T TIGR02800 257 NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-------------------- 316 (417)
T ss_pred CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE--------------------
Confidence 588889887754443333333446789999998877654 33 56667765433211
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCC---cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEEE
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDI 238 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~i 238 (293)
+..........+++|++++++.++.++ .|.+||+.++.. ..+... .......|+|+|++|+..+.++ .+++
T Consensus 317 -l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~ 393 (417)
T TIGR02800 317 -LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGL 393 (417)
T ss_pred -eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEE
Confidence 111122334567899999988887776 788999877543 233322 2345568999999988777653 3455
Q ss_pred EEcCCCCEEEEEec-CCCcceeEE
Q 022716 239 SNVHTGRTVHQIPC-RAAMNSVEW 261 (293)
Q Consensus 239 w~~~~~~~~~~~~~-~~~i~~~~~ 261 (293)
.+. +++....+.. ...+...+|
T Consensus 394 ~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 394 VST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEC-CCceeeECCCCCCCcCCCCC
Confidence 553 3444444432 233444554
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4.8e-13 Score=108.42 Aligned_cols=246 Identities=18% Similarity=0.215 Sum_probs=169.9
Q ss_pred cccEEEEEECCCCC--eEEEEeCCCcEEEeecCCCCCCcee-E-EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 20 KKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVK-D-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 20 ~~~v~~l~~s~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~-~-~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
...|+.++|..+++ .|.-.+.|-.+..+.+.+....... . .....-.++|..++.. ...|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEe
Confidence 45788888876654 3444446777777776543321110 0 0122345566666542 24678899999999999
Q ss_pred CCCCe----eeeeeeecCceEEEEEcCCCCEE-EEEeCC--CeEEEEEccccceeeeecc----cceeeeeEEecCCCEE
Q 022716 96 ARSGK----CSQQAELSGENINITYKPDGTHI-AVGNRD--DELTILDVRKFKPIHRRKF----GYEVNEIAWNMTGEMF 164 (293)
Q Consensus 96 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d--~~i~l~d~~~~~~~~~~~~----~~~~~~v~~~~~~~~~ 164 (293)
.+.+. .+..+........+.-+|...++ ++|+.. +.+.+||+.+.+++...+. .....--.|
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW------- 204 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVW------- 204 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeee-------
Confidence 87543 22233344455556656655555 558888 8999999987654433221 011111122
Q ss_pred EEecCCCCEEEEEECCC--CCEEEEecCCCcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 165 FLTTGNAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~--~~~l~~gs~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
++.+.|-+. ...||+++.-+.+++||.+.++ ++.++.-.+.++.++...|+++++++|..-+.+..+|.
T Consensus 205 --------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~ 276 (412)
T KOG3881|consen 205 --------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDL 276 (412)
T ss_pred --------eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecc
Confidence 345667666 7889999999999999998664 45566666789999999999999999999999999999
Q ss_pred CCCCEEEE-E-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716 242 HTGRTVHQ-I-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEG 283 (293)
Q Consensus 242 ~~~~~~~~-~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~ 283 (293)
..++.+.. + ...++|++|.-+|...++|++|.|++++|+|--
T Consensus 277 r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 277 RGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 99887654 4 356789999999999999999999876665543
No 224
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=6.7e-12 Score=110.09 Aligned_cols=223 Identities=13% Similarity=0.189 Sum_probs=138.5
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
.+.++.+...+...+|+|||++|+..+.+ ..|.+|+++... .. .+......+....|+|++..++++...++
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---~~--~l~~~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---RE--QITNFEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---EE--EccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 44566777889999999999999877654 357788886432 11 12222334456789998766666666655
Q ss_pred --eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716 90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 90 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
.|.+||+.++................|+|||+.++..+. ++ .+.++|+.+.+..+.. +
T Consensus 266 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt----------~------- 328 (430)
T PRK00178 266 NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT----------F------- 328 (430)
T ss_pred CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee----------c-------
Confidence 578889988765443333334456789999998877664 33 5666676554422111 0
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCC-C--cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---CcEEE
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSAD-S--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED---LFIDI 238 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---~~i~i 238 (293)
........+++|+++.++..+.+ + .|.++|+.++.. +.+.. ........|+|+|++++..+.+ ..+++
T Consensus 329 ----~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~ 402 (430)
T PRK00178 329 ----VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLML 402 (430)
T ss_pred ----CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence 00111235678998888776543 2 488889887653 33332 1223356899999998776643 34667
Q ss_pred EEcCCCCEEEEEec-CCCcceeEECCC
Q 022716 239 SNVHTGRTVHQIPC-RAAMNSVEWNPK 264 (293)
Q Consensus 239 w~~~~~~~~~~~~~-~~~i~~~~~sp~ 264 (293)
.+.. +.....+.. .+.+...+|+|-
T Consensus 403 ~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 403 VSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECC-CCceEECcCCCCCcCCCccCCC
Confidence 7774 443434433 345777889884
No 225
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.4e-12 Score=106.04 Aligned_cols=219 Identities=16% Similarity=0.212 Sum_probs=155.4
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC---CeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
.|.+.|-||+|+...+.+.+|+.+++|..-|+++. ..+....|++ .|+.+..+|.+ +.|++.+.++.|.+|
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-----qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK-----QSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFI 176 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccc-----eeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEE
Confidence 34589999999999999999999999999999753 3344556665 79999999984 678899999999999
Q ss_pred eCCCCee----eeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccc-eeeeec----ccce---eeeeEEecCC
Q 022716 95 DARSGKC----SQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFK-PIHRRK----FGYE---VNEIAWNMTG 161 (293)
Q Consensus 95 d~~~~~~----~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~-~~~~~~----~~~~---~~~v~~~~~~ 161 (293)
|.+...- .-.........++.|.|.. .++++.++.+-+.+||.+... ++.+.. ++.+ -..+.|++.|
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 9976541 1111233445678888854 577888888999999988643 222211 1111 2457788877
Q ss_pred CEEEEecC----------C-------------C-----CEEEEEECCCCCEEEEecCCCcEEEEeCCC-----C------
Q 022716 162 EMFFLTTG----------N-------------A-----GCYCIAIDPMGRYFAVGSADSLVSLWDISE-----M------ 202 (293)
Q Consensus 162 ~~~~~~~~----------~-------------~-----~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-----~------ 202 (293)
..++..-. . + .+.+++|- +...+++|+.+-.|++|.+.. +
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~ 335 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGH 335 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCc
Confidence 65432111 0 1 12233333 345599999999999998742 1
Q ss_pred ------------EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 203 ------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 203 ------------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
..+..+++|..-++.+.|+|-..+|++.+-...++||.-..
T Consensus 336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred chhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccccc
Confidence 11345678999999999999999999999999999997643
No 226
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=1.6e-11 Score=107.35 Aligned_cols=204 Identities=18% Similarity=0.205 Sum_probs=131.3
Q ss_pred cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---CeEEEEeCCCCeeeeeeeecCceEEEEEcCC
Q 022716 43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPD 119 (293)
Q Consensus 43 ~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 119 (293)
.|.++|.+.. .. ..+..+...+....|+|++. .|+.+..+ ..|.+||+.+++........+....++|+||
T Consensus 171 ~l~~~d~~g~---~~--~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGA---NP--QTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCC---CC--EEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCC
Confidence 4666665422 11 22345566788889999865 44444432 5799999988765444444555667899999
Q ss_pred CCEEEEE-eCCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--c
Q 022716 120 GTHIAVG-NRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--L 193 (293)
Q Consensus 120 ~~~l~~~-~~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~ 193 (293)
|+.|+.. +.++ .+.+||+.+......... ........|+|+++.|+..+. ++ .
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~---------------------~~~~~~~~~s~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG---------------------PGIDTEPSWSPDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCC---------------------CCCCCCEEECCCCCEEEEEECCCCCce
Confidence 9987754 3343 588888876543221111 111123467888887766554 33 5
Q ss_pred EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEE
Q 022716 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAY 270 (293)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~ 270 (293)
|.++|+..+.. ..+...........|+|+|++++..+.+. .|.++|..++.. ..+..........|+|++++|++
T Consensus 304 iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 304 IYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILY 381 (417)
T ss_pred EEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEE
Confidence 77778776643 33444445667889999999998888765 788999887543 33333333456789999999998
Q ss_pred EEcCC
Q 022716 271 AGDDK 275 (293)
Q Consensus 271 ~~~d~ 275 (293)
++.++
T Consensus 382 ~~~~~ 386 (417)
T TIGR02800 382 ATTRG 386 (417)
T ss_pred EEeCC
Confidence 88764
No 227
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=1.9e-11 Score=98.69 Aligned_cols=191 Identities=15% Similarity=0.269 Sum_probs=135.6
Q ss_pred cEEEEEECCCCCeEEEEeCC--CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 22 KVHSVAWNCTGTKLASGSVD--QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
.|...-||.+ ++|..+.+ ..+++.++... ..+..+ -....|.+|.++.+ .+++ +-++ .|.|||+++=
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~--~~ICe~---~fpt~IL~VrmNr~--RLvV-~Lee-~IyIydI~~M 116 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK--TTICEI---FFPTSILAVRMNRK--RLVV-CLEE-SIYIYDIKDM 116 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccC--ceEEEE---ecCCceEEEEEccc--eEEE-EEcc-cEEEEecccc
Confidence 4555566543 44444444 34778777532 122222 23467999998753 3444 4443 3999999887
Q ss_pred eeeeeeeec-CceE-EEEEcCC--CCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 100 KCSQQAELS-GENI-NITYKPD--GTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 100 ~~~~~~~~~-~~~~-~~~~~~~--~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
+.+..++.. ..+. -++++|+ +.+++.=+ ..|.|.+||+.+.++... +..|.+.+
T Consensus 117 klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~--------------------I~aH~~~l 176 (391)
T KOG2110|consen 117 KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT--------------------INAHKGPL 176 (391)
T ss_pred eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE--------------------EEecCCce
Confidence 777766543 2222 3555554 44776543 368999999887665543 34678889
Q ss_pred EEEEECCCCCEEEEecCCCc-EEEEeCCCCEEEEEeeccC--CCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 174 YCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 174 ~~~~~~~~~~~l~~gs~d~~-i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
-|++|+++|..+|++|+.|+ ||+|.+.++.++.+|..-. -.|.+++|+|++++|++.|.-++|.++.+.+
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99999999999999999998 8999999999999987543 3588999999999999999999999997753
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.52 E-value=7.9e-12 Score=106.35 Aligned_cols=267 Identities=16% Similarity=0.120 Sum_probs=149.9
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
..+....+.-..+.|+|||+++.+++.||.|.++|+.... ....+.. + .....+++++++.-++++.-..+.+.+
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~~-G--~~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIKV-G--GNPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE--S--SEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEec-C--CCcceEEEcCCCCEEEEEecCCCceeE
Confidence 3343333333457899999999999999999999998642 2222322 2 224578888876544555567999999
Q ss_pred EeCCCCeeeeeeeecC--------ceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceee--eecccceeeeeEEecCCC
Q 022716 94 WDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIH--RRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 94 wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~--~~~~~~~~~~v~~~~~~~ 162 (293)
+|.++.+.+..+...+ .+..+..+|....++..-. .+++.+.|..+..+.. ....+.......|++.++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 9999988777655332 3445666788776666554 5889888987655443 233344456678888887
Q ss_pred EEEEecCCCCEE------------EE-------------EECCCC----------CEEEEecCCCcEEEEeCCCCEEEEE
Q 022716 163 MFFLTTGNAGCY------------CI-------------AIDPMG----------RYFAVGSADSLVSLWDISEMLCVRT 207 (293)
Q Consensus 163 ~~~~~~~~~~~~------------~~-------------~~~~~~----------~~l~~gs~d~~i~iwd~~~~~~~~~ 207 (293)
.++.+.....-. .+ -.||.. ...++.-....+.+||...++.+++
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~ 264 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT 264 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence 766543221100 00 012221 1111111222444577777777777
Q ss_pred eeccCCCeeEEEEccCCCEEEEe----cCCCcEEEEEcCCCCEEEEEecC--CCcceeEECCCCCeEEEEEcCCC--CCC
Q 022716 208 FTKLEWPVRTISFSHTGDYIASA----SEDLFIDISNVHTGRTVHQIPCR--AAMNSVEWNPKYNLLAYAGDDKN--KYQ 279 (293)
Q Consensus 208 ~~~~~~~v~~l~~sp~~~~l~s~----s~d~~i~iw~~~~~~~~~~~~~~--~~i~~~~~sp~~~~la~~~~d~~--~~~ 279 (293)
+.....+ .-+.-+|+++++... .....|.++|.++.+.++.+... .++..++|+++|.++-.+..+++ +.+
T Consensus 265 I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 265 IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 7665555 677889999999887 45588999999998777776532 34888999999987655555543 444
Q ss_pred CCcceEE
Q 022716 280 ADEGVFR 286 (293)
Q Consensus 280 ~~~~~~~ 286 (293)
.|..+++
T Consensus 344 ~D~~Tl~ 350 (369)
T PF02239_consen 344 YDAKTLK 350 (369)
T ss_dssp EETTTTE
T ss_pred EECCCcE
Confidence 4444433
No 229
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=1.5e-11 Score=107.95 Aligned_cols=222 Identities=15% Similarity=0.193 Sum_probs=133.4
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCC-C--cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVD-Q--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g--~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
+.++.+...+.+..|||||+.|+..+.+ + .|.+||+.... ... +...........|+|++..++++.+.++.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---~~~--lt~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---REK--VTSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC---eEE--ecCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 3344556678899999999999876543 3 46777775421 111 11112233467899987666667777775
Q ss_pred --EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 91 --VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 91 --i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
|.++|+.+++...............|+|||+.++..+. ++ .+.++|+.+.+..... +
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt----------~-------- 347 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT----------F-------- 347 (448)
T ss_pred eEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe----------c--------
Confidence 77778877765443333334556889999998877653 33 4555666544322110 0
Q ss_pred EecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC-CCc--EEEE
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE-DLF--IDIS 239 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d~~--i~iw 239 (293)
........+++|+|++++..+. ++ .|.++|+.++.. ..+.... ......|+|+|+.|+..+. ++. ++++
T Consensus 348 ---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~ 422 (448)
T PRK04792 348 ---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAV 422 (448)
T ss_pred ---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 0111123577899888776654 33 355568777643 2333221 2234579999998876654 333 6777
Q ss_pred EcCCCCEEEEEec-CCCcceeEECCC
Q 022716 240 NVHTGRTVHQIPC-RAAMNSVEWNPK 264 (293)
Q Consensus 240 ~~~~~~~~~~~~~-~~~i~~~~~sp~ 264 (293)
+. +|+....+.. ...+...+|+|-
T Consensus 423 ~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 423 SI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EC-CCCceEECcCCCCCcCCCccCCC
Confidence 76 5665555543 345778899983
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1e-11 Score=100.11 Aligned_cols=230 Identities=17% Similarity=0.256 Sum_probs=150.9
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG- 99 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~- 99 (293)
..+..++|++.-..+|++..|-.||+|+-.... ...++ ..-...|++++|-|-....| +.+..+-|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~---pt~Lk-s~sQrnvtclawRPlsasel-avgCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC---PTKLK-SVSQRNVTCLAWRPLSASEL-AVGCRAGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC---Cceec-chhhcceeEEEeccCCccee-eeeecceeEEEEcCccc
Confidence 467889999877778999999999999865421 11111 12245699999999766554 4566777899975321
Q ss_pred ---e--------eeeeee--ecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 100 ---K--------CSQQAE--LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 100 ---~--------~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
+ +.+.+. .+..+.+++|.+||..+++++- |..|.+||..+...+.....
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~----------------- 236 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK----------------- 236 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-----------------
Confidence 1 111122 2345778999999999999885 67899999876543332211
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCCCEEE-EecCCCcEEEEEcCC
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIA-SASEDLFIDISNVHT 243 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~d~~i~iw~~~~ 243 (293)
+-+++.-+.|+||+.++..++-|+..++|+..+ ..+.+-. --...|..-+|+|+|++|. +++..-.++--.+..
T Consensus 237 ---glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~ 312 (445)
T KOG2139|consen 237 ---GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDG 312 (445)
T ss_pred ---CCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEcCCceEEEEeecC
Confidence 223455788999999999999999999996543 3333222 2334899999999998764 444444333222211
Q ss_pred --C--------CEEEE---Ee----------cCCCcceeEECCCCCeEEEEEcCCC
Q 022716 244 --G--------RTVHQ---IP----------CRAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 244 --~--------~~~~~---~~----------~~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
+ +.+.. ++ .-++.-+++|.|.|++||+.=..++
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 1 01100 00 1245678999999999999866655
No 231
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.51 E-value=2.5e-12 Score=117.68 Aligned_cols=216 Identities=17% Similarity=0.237 Sum_probs=145.3
Q ss_pred EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-------eeeeeee-ecCceEEEEEcCCCCEEEEEeCCCe
Q 022716 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAE-LSGENINITYKPDGTHIAVGNRDDE 131 (293)
Q Consensus 60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~ 131 (293)
..+..|+..+..++.++....+|+|||.||+|++||.+.- ++..++. ..+.+..+...+.+.++++++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 3566788888888888876689999999999999997532 1222233 3455667788889999999999999
Q ss_pred EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCC-EEEEecCCCcEEEEeCCCCEEEEEee
Q 022716 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGR-YFAVGSADSLVSLWDISEMLCVRTFT 209 (293)
Q Consensus 132 i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~ 209 (293)
|.+.++.-.+..+.... .+....-...|.. +..-++.. .+. .++.++.-+.|..||++....+-.++
T Consensus 1122 v~~~~id~~~~~~~~~~--~~ri~n~~~~g~v---------v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVAT--QVRIPNLKKDGVV---------VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred EEEEEccccccccceee--eeecccccCCCce---------EEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 99998865321111000 0000000001110 11112211 233 67778888999999998765443332
Q ss_pred --ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--EEecCCCcceeEECCCC---CeEEEEEcCCCCCCCCc
Q 022716 210 --KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--QIPCRAAMNSVEWNPKY---NLLAYAGDDKNKYQADE 282 (293)
Q Consensus 210 --~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~--~~~~~~~i~~~~~sp~~---~~la~~~~d~~~~~~~~ 282 (293)
.-.+.|++++.+|.++++++|..-|.+.+||++-+..+. .++.+.+|+.+..+|.. ...++++.. ..
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~------~~ 1264 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS------SN 1264 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc------CC
Confidence 234689999999999999999999999999998877765 45678889998887744 466666653 23
Q ss_pred ceEEEEeeec
Q 022716 283 GVFRIYGFEN 292 (293)
Q Consensus 283 ~~~~~~~~~~ 292 (293)
.-+-+|++|+
T Consensus 1265 nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1265 NEVSTWNMET 1274 (1431)
T ss_pred Cceeeeeccc
Confidence 4467777765
No 232
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=5.2e-12 Score=100.11 Aligned_cols=202 Identities=17% Similarity=0.235 Sum_probs=142.5
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
+.+++..|...|+++.|+|.++.|++++.|..-.+|...+...- ...+.+..|+...+++.|+|. ++.|+.|+....|
T Consensus 47 ~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W-kptlvLlRiNrAAt~V~WsP~-enkFAVgSgar~i 124 (361)
T KOG1523|consen 47 PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW-KPTLVLLRINRAATCVKWSPK-ENKFAVGSGARLI 124 (361)
T ss_pred eceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee-ccceeEEEeccceeeEeecCc-CceEEeccCccEE
Confidence 34678899999999999999999999999999999988433221 123456678899999999997 5789999999999
Q ss_pred EEEeCCCCeee-----eeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceee---e----ecccceeeeeEEec
Q 022716 92 RLWDARSGKCS-----QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---R----RKFGYEVNEIAWNM 159 (293)
Q Consensus 92 ~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~---~----~~~~~~~~~v~~~~ 159 (293)
.||-.....-- ........+.++.|+|++-+|++|+.|+.++++..--+..-. . .++++..-...|
T Consensus 125 sVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-- 202 (361)
T KOG1523|consen 125 SVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-- 202 (361)
T ss_pred EEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh--
Confidence 99977554321 011234557899999999999999999999998642110000 0 001111100111
Q ss_pred CCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCC
Q 022716 160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTG 224 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~ 224 (293)
....+.+-.+.|+|.|..|+-.+.|.++.+-|..... .+.......-|..++.|-.+.
T Consensus 203 -------~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 203 -------SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred -------ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence 1233456678999999999999999999999976653 344444444688888775544
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=2.8e-11 Score=95.99 Aligned_cols=175 Identities=13% Similarity=0.247 Sum_probs=123.2
Q ss_pred CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-CCeeeeeeeecCceE-EEEEcCC
Q 022716 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKCSQQAELSGENI-NITYKPD 119 (293)
Q Consensus 42 g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~~ 119 (293)
+.|.||| +. .......+.+ ..+|.++.+.++ .++. -....|.||... +.+.+..++....+. -++..|.
T Consensus 75 NkviIWD-D~-k~~~i~el~f---~~~I~~V~l~r~---riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 75 NKVIIWD-DL-KERCIIELSF---NSEIKAVKLRRD---RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred ceEEEEe-cc-cCcEEEEEEe---ccceeeEEEcCC---eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 5899998 21 1122233333 567999998653 3433 457889999886 444445444433222 2334442
Q ss_pred -CCEEEE--EeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCc-EE
Q 022716 120 -GTHIAV--GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSL-VS 195 (293)
Q Consensus 120 -~~~l~~--~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~-i~ 195 (293)
++.+++ |-.-|.+.+.|+..... +....+..|+..|.|++++-+|..+|++|..|+ |+
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKP------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCc------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 222322 33457788888765332 123456778899999999999999999999998 89
Q ss_pred EEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 196 LWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 196 iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
|||..+++.+.++..- ...|.+++|||+..+||.+|+.|++.|+.++.
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999988653 34799999999999999999999999998865
No 234
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=5.9e-14 Score=118.69 Aligned_cols=223 Identities=20% Similarity=0.311 Sum_probs=160.8
Q ss_pred cccccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCce---eEEEeeCCcCCeeEEEEcCCCCCEE
Q 022716 6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV---KDIELRGHADSVDQLCWDPKHADLI 82 (293)
Q Consensus 6 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~~~~~l 82 (293)
..|+++....|+||...|..++--.+.+-+++++.|++||+|.+.+...+.. ....+..|+.+|.++.|..+. ..+
T Consensus 721 ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i 799 (1034)
T KOG4190|consen 721 LNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI 799 (1034)
T ss_pred cccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee
Confidence 4566777788999999999998777788899999999999999976543332 345677899999999987542 333
Q ss_pred EEEeCCCeEEEEeCCCCeeeeeeee---cCceEEEEEcC--CCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeE
Q 022716 83 ATASGDKTVRLWDARSGKCSQQAEL---SGENINITYKP--DGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIA 156 (293)
Q Consensus 83 ~s~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~--~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~ 156 (293)
++.|+-|++||.--++.+..+.. ++....+..-| +...++.| +...+++++|.|...-..+.+..
T Consensus 800 --~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc------- 870 (1034)
T KOG4190|consen 800 --ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC------- 870 (1034)
T ss_pred --eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec-------
Confidence 57899999999876665543332 22222333223 33445555 67889999999876544332210
Q ss_pred EecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcE
Q 022716 157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFI 236 (293)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i 236 (293)
+ ....++-+-++++-|.|+.++.+-++|+|.+.|.+++..++++...+-....++ .|..+.|+....|..+
T Consensus 871 -n-------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHsl 941 (1034)
T KOG4190|consen 871 -N-------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSL 941 (1034)
T ss_pred -c-------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhccccee
Confidence 0 011223456889999999999999999999999999999988877666666665 4778888888889888
Q ss_pred EE-EEcCCCCEE
Q 022716 237 DI-SNVHTGRTV 247 (293)
Q Consensus 237 ~i-w~~~~~~~~ 247 (293)
.+ |-.-++...
T Consensus 942 aVnWhaldgimh 953 (1034)
T KOG4190|consen 942 AVNWHALDGIMH 953 (1034)
T ss_pred EeeehhcCCeee
Confidence 88 876665443
No 235
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=7e-11 Score=102.98 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=133.4
Q ss_pred cceeecCccccEEEEEECCCCCeEE---EEeCCCc--EEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLA---SGSVDQT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~---s~~~dg~--v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
..+.++.....+.+-+|||||+.++ +...+|. |.+.+++... .. .+...........|+|++..++++..
T Consensus 176 ~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~---~lt~~~g~~~~p~wSPDG~~Laf~s~ 250 (428)
T PRK01029 176 NLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GK---KILALQGNQLMPTFSPRKKLLAFISD 250 (428)
T ss_pred CceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ce---EeecCCCCccceEECCCCCEEEEEEC
Confidence 3445555566778889999998632 4444444 4555655321 11 12222333456789998766665554
Q ss_pred CCC----eEEEEeCCCC---eeeeeeeec-CceEEEEEcCCCCEEEEEe-CCCeEEEEE--ccccceeeeecccceeeee
Q 022716 87 GDK----TVRLWDARSG---KCSQQAELS-GENINITYKPDGTHIAVGN-RDDELTILD--VRKFKPIHRRKFGYEVNEI 155 (293)
Q Consensus 87 ~d~----~i~vwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~d~~i~l~d--~~~~~~~~~~~~~~~~~~v 155 (293)
.++ .+..|++..+ ......... +.....+|+|||+.|+..+ .++...+|. +....
T Consensus 251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-------------- 316 (428)
T PRK01029 251 RYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-------------- 316 (428)
T ss_pred CCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--------------
Confidence 333 3444676543 222222211 2334679999999888766 455444543 32110
Q ss_pred EEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC---CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716 156 AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE 232 (293)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 232 (293)
+....+...........|+|+|+.|+..+.+ ..|.+||+..++.. .+......+....|+|||+.|+..+.
T Consensus 317 -----~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 317 -----QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred -----cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence 0001111222233456788999887765443 46999999887653 34433445678999999998865432
Q ss_pred ---CCcEEEEEcCCCCEEEEEecCCCcceeEECCCC
Q 022716 233 ---DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265 (293)
Q Consensus 233 ---d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~ 265 (293)
...|+++++..++..........+...+|+|..
T Consensus 391 ~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 356889998877654444444557788999854
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=1.8e-09 Score=91.75 Aligned_cols=237 Identities=19% Similarity=0.298 Sum_probs=145.7
Q ss_pred ccEEEEEECCCCCeEEEEeC----CCcEEEeecCCCCCCceeEEE-eeCCcCCeeEEEEcCCCCCEEEEEe-CCCeEEEE
Q 022716 21 KKVHSVAWNCTGTKLASGSV----DQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATAS-GDKTVRLW 94 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~----dg~v~iw~~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~~~~~l~s~~-~d~~i~vw 94 (293)
.....++++|++++|.+... +|.|..|++.... +....+. ....-..-..++++|++. +|+.+. .++.+.++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~i~~~~~g~-~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCHIAVDPDGR-FLYVANYGGGSVSVF 114 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESSSCEEEEEECTTSS-EEEEEETTTTEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCCCCcEEEEEecCCC-EEEEEEccCCeEEEE
Confidence 45677889999999987766 5799999887542 2222221 111122234677888754 555554 59999999
Q ss_pred eCCC-Ceeeee---ee-----------ecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccce-eeeecccceeeeeEE
Q 022716 95 DARS-GKCSQQ---AE-----------LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKP-IHRRKFGYEVNEIAW 157 (293)
Q Consensus 95 d~~~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~ 157 (293)
++.. +..... .. ...++.++.++|+++++++... ...|.++++..... +.. ...
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~------~~~--- 185 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP------VDS--- 185 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE------EEE---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE------eec---
Confidence 9976 433222 11 1234567999999998888764 46889998865431 111 000
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCC--CCE--EEEEeecc------CCCeeEEEEccCCCE
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS--EML--CVRTFTKL------EWPVRTISFSHTGDY 226 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~--~~~--~~~~~~~~------~~~v~~l~~sp~~~~ 226 (293)
.........-.++|+|+++++ ++.-.+++|.++++. ++. .+..+... ......|+++|||++
T Consensus 186 -------~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 186 -------IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF 258 (345)
T ss_dssp -------EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred -------cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence 011223345567888888765 455567889999887 442 22222221 125788999999999
Q ss_pred EEEec-CCCcEEEEEcC--CCCE--EEEEecC-CCcceeEECCCCCeEEEEEcCC
Q 022716 227 IASAS-EDLFIDISNVH--TGRT--VHQIPCR-AAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 227 l~s~s-~d~~i~iw~~~--~~~~--~~~~~~~-~~i~~~~~sp~~~~la~~~~d~ 275 (293)
|..+. .+..|.++++. +++. +..++.. ...+.++++|+|++|+++..+.
T Consensus 259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 86655 66789999983 3443 3344543 3478999999999999998654
No 237
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=5.1e-12 Score=106.50 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=110.3
Q ss_pred cccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-
Q 022716 20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR- 97 (293)
Q Consensus 20 ~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~- 97 (293)
+..|+|+.|-|-++ .++.+-.+|.+.+||..... +-+.+-.. ..++ .+.+. |..|.-.
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~----------~~t~p~~~--~~k~-~~~f~-------i~t~ksk~ 278 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC----------GATAPSYQ--ALKD-GDQFA-------ILTSKSKK 278 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccc----------cCCCCccc--ccCC-CCeeE-------Eeeeeccc
Confidence 47899999988654 55667779999999874211 11111111 1122 22222 2222211
Q ss_pred CCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 98 SGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 98 ~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
+...+..+. ..+.+...+|+|||++|++.+.||.++++|..+.+.+...+ +-=+...|+
T Consensus 279 ~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--------------------SYFGGLLCv 338 (636)
T KOG2394|consen 279 TRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--------------------SYFGGLLCV 338 (636)
T ss_pred cCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--------------------hhccceEEE
Confidence 112222222 34566679999999999999999999999987654332111 111346799
Q ss_pred EECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc
Q 022716 177 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221 (293)
Q Consensus 177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 221 (293)
+|+|||+++++|++|.-|.+|.+...+.+..-.+|..+|..|+|.
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999999999998888888999999999997
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=3.9e-12 Score=110.70 Aligned_cols=248 Identities=17% Similarity=0.258 Sum_probs=166.1
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-----------ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------KVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-----------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
....+|++|+.+..++|.||.||.+++-.++..... ......+.||+..|..+.|+.. .+.|-|...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc-cccccccCCC
Confidence 457899999999999999999999999887643211 0112247899999999999865 4567888889
Q ss_pred CeEEEEeCCCCeeeeeee---ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 89 KTVRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
|.|.+|-+-.+.....+. ..+-+.++.|..||..+.....||.+.+=.+........---+....
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~------------ 160 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLA------------ 160 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhecc------------
Confidence 999999987775433221 23456789999999999999999998876655432211100011111
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-------E-EEE---eeccCCCeeEEEEc--------cCCCE
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-------C-VRT---FTKLEWPVRTISFS--------HTGDY 226 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-------~-~~~---~~~~~~~v~~l~~s--------p~~~~ 226 (293)
-+.+++|.+.++.+-..|.+++||.+... + +.. +....-.+..+.|. |+...
T Consensus 161 ---------hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~ 231 (1189)
T KOG2041|consen 161 ---------HVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR 231 (1189)
T ss_pred ---------ceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE
Confidence 24456777777777778899999865321 1 111 11111234445443 57788
Q ss_pred EEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC-CCcceEEEEe
Q 022716 227 IASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ-ADEGVFRIYG 289 (293)
Q Consensus 227 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~-~~~~~~~~~~ 289 (293)
||.+-..|.+.|--...-...-.+.....+..+.|+++|..||.+|.+...-+ .+...+.+|+
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys 295 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS 295 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence 99998888887665443333334444567889999999999999998765544 2223455553
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.4e-10 Score=101.83 Aligned_cols=191 Identities=14% Similarity=0.142 Sum_probs=119.7
Q ss_pred eeCCcCCeeEEEEcCCCCCEEEEEeCC--CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCC--eEEEEE
Q 022716 62 LRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDD--ELTILD 136 (293)
Q Consensus 62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~--~i~l~d 136 (293)
+..+...+....|+|++..++++...+ ..|.+||+.+++........+.....+|+|||+.++.. ..++ .|.++|
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 345667788999999865444444333 46888999888655443344455568999999988754 3444 577788
Q ss_pred ccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCC
Q 022716 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEW 213 (293)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~ 213 (293)
+.+........ .........|+|+++.++..+. ++ .|.++|+..+... .+.....
T Consensus 274 ~~~~~~~~lt~---------------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~ 331 (430)
T PRK00178 274 LASRQLSRVTN---------------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGN 331 (430)
T ss_pred CCCCCeEEccc---------------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC
Confidence 87654322111 1111234567888887665543 33 5777787766532 2222222
Q ss_pred CeeEEEEccCCCEEEEecCC-C--cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 214 PVRTISFSHTGDYIASASED-L--FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d-~--~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
......|+|+|++|+..+.+ + .|.++|+.+++. +.+..........|+|+|..++.++.++
T Consensus 332 ~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 332 YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecC
Confidence 23456899999999777643 3 488899888764 3333222334568999999999888653
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=1.2e-11 Score=99.10 Aligned_cols=248 Identities=17% Similarity=0.322 Sum_probs=151.7
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCce-eEEEeeCCc------------CCeeEEEEcCCC-CCEEEE
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHA------------DSVDQLCWDPKH-ADLIAT 84 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~-~~~~~~~h~------------~~i~~~~~~~~~-~~~l~s 84 (293)
....|.++.|+.+|.+||||..+|.|.++.-+....+.. ....++.|. ..|+.+.|.+++ ...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 346799999999999999999999999997543221111 112334443 457788887654 345666
Q ss_pred EeCCCeEEEEeCCCCeeee--------------------eee-----------------ecCceEEEEEcCCCCEEEEEe
Q 022716 85 ASGDKTVRLWDARSGKCSQ--------------------QAE-----------------LSGENINITYKPDGTHIAVGN 127 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~~~~~--------------------~~~-----------------~~~~~~~~~~~~~~~~l~~~~ 127 (293)
.+.|.+|++|.+....... ... +.-++.++.+..|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 7899999999874321110 000 00112346666777666665
Q ss_pred CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEE-E
Q 022716 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC-V 205 (293)
Q Consensus 128 ~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~-~ 205 (293)
.|-+|.+|.+.-..... +.|...|.. +..-..-|++..|||.. +.++-.++.|+|++-|+++... .
T Consensus 183 DdLRINLWnlei~d~sF--------nIVDIKP~n----mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSF--------NIVDIKPAN----MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred cceeeeeccccccCCce--------eEEEccccC----HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 37788888875321100 011111100 00000124566788864 6788888999999999984311 0
Q ss_pred ---EEee------------ccCCCeeEEEEccCCCEEEEecCC-CcEEEEEcC-CCCEEEEEecCC-------------C
Q 022716 206 ---RTFT------------KLEWPVRTISFSHTGDYIASASED-LFIDISNVH-TGRTVHQIPCRA-------------A 255 (293)
Q Consensus 206 ---~~~~------------~~~~~v~~l~~sp~~~~l~s~s~d-~~i~iw~~~-~~~~~~~~~~~~-------------~ 255 (293)
+.+. +.-..|..+.|+++|+|+++ .| .+|++||+. ..+.+..++.+. .
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils--RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE--eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 1111 11234788999999999987 45 679999995 345555554221 1
Q ss_pred c---ceeEECCCCCeEEEEEcCCCCCCCCcceEEEEe
Q 022716 256 M---NSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG 289 (293)
Q Consensus 256 i---~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~ 289 (293)
| ..+.||.++.++.+||-.. +||+|+
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n--------~frvf~ 357 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNN--------VFRVFN 357 (433)
T ss_pred hhheeEEEEcCCcceEecccccc--------eEEEec
Confidence 2 2589999999999999764 556665
No 241
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=1.8e-13 Score=113.19 Aligned_cols=174 Identities=12% Similarity=0.107 Sum_probs=140.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC--------EEEE----------ecCC
Q 022716 109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE--------MFFL----------TTGN 170 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~----------~~~~ 170 (293)
..++.+.++.+|++++.|+..|.+-.+|..+.+...++.....|.++.|-.... ..++ .-..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence 346788999999999999999999999999988877776666666666643322 2222 2222
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE-E
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH-Q 249 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~-~ 249 (293)
..+..+.|-|.--+|++++..|-++.-|+..|..+..+..-..++..++-+|-+..+-+|...|+|.+|+......+- -
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 345567888988899999999999999999998888887777889999999999999999999999999998876543 4
Q ss_pred EecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 250 IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 250 ~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
+.++++|++|++.|+|.|+|++|.|+.+.+||-
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 567889999999999999999999975555443
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=2e-10 Score=100.89 Aligned_cols=190 Identities=13% Similarity=0.127 Sum_probs=116.3
Q ss_pred eCCcCCeeEEEEcCCCCCEEEEEeCCC--eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCe--EEEEEc
Q 022716 63 RGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDE--LTILDV 137 (293)
Q Consensus 63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~--i~l~d~ 137 (293)
..+...+....|+|++..++++...++ .|.+||+.+++........+.....+|+|||+.++.. ..++. |.++|+
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 345667888899998765555444443 5888898887654333334444568999999988754 45554 667777
Q ss_pred cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCCC
Q 022716 138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWP 214 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~~ 214 (293)
.+.+..+.. .+.......+|+|+++.++..+. ++ .|.++|+..++.. .+......
T Consensus 294 ~tg~~~~lt---------------------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~ 351 (448)
T PRK04792 294 ATKALTRIT---------------------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQ 351 (448)
T ss_pred CCCCeEECc---------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCC
Confidence 654432211 11112234677888887765543 33 4666677766533 22222222
Q ss_pred eeEEEEccCCCEEEEecC-CC--cEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 215 VRTISFSHTGDYIASASE-DL--FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 215 v~~l~~sp~~~~l~s~s~-d~--~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
....+|+|||++|+..+. ++ .|.++|+.+++.. .+..........|+|+|.+|+++..++
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecC
Confidence 345689999999877654 34 3566787776542 332222233568999999998887653
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.4e-10 Score=99.62 Aligned_cols=192 Identities=16% Similarity=0.095 Sum_probs=117.6
Q ss_pred CcCCeeEEEEcCCCCC--EEEEEeCC--CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC----eEEEE
Q 022716 65 HADSVDQLCWDPKHAD--LIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD----ELTIL 135 (293)
Q Consensus 65 h~~~i~~~~~~~~~~~--~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~----~i~l~ 135 (293)
....+..-.|+|++.. +++....+ ..|.+.++..++........+.....+|+|||+.|+..+. ++ .+..|
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 3444566789998765 33344444 3577778888776555556666667899999998887653 22 22334
Q ss_pred EccccceeeeecccceeeeeEEecCCCEEEEecCC-CCEEEEEECCCCCEEEEec-CCCcEEEE--eCCC-CEEEEEeec
Q 022716 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVGS-ADSLVSLW--DISE-MLCVRTFTK 210 (293)
Q Consensus 136 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~gs-~d~~i~iw--d~~~-~~~~~~~~~ 210 (293)
++..... +....+.... ......+|+|||+.|+..+ .+|...|| ++.. +.....+..
T Consensus 263 ~~~~g~~------------------g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 263 SLETGAI------------------GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred ecccCCC------------------CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 5433100 0001111111 1224568899998777665 45655555 4432 222344444
Q ss_pred cCCCeeEEEEccCCCEEEEecCC---CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716 211 LEWPVRTISFSHTGDYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 211 ~~~~v~~l~~sp~~~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
....+....|||||++|+..+.+ ..|.+||+.+++..........+....|+|+|+.|+..+.+
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECC
Confidence 44566788999999998876543 45899999888754322223356789999999998877654
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=2.5e-09 Score=89.48 Aligned_cols=234 Identities=13% Similarity=0.115 Sum_probs=148.4
Q ss_pred CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEEEEeCCCCeeeeeeeecCce-
Q 022716 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWDARSGKCSQQAELSGEN- 111 (293)
Q Consensus 42 g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~vwd~~~~~~~~~~~~~~~~- 111 (293)
++|.+.|.+... ....+. .+..... + ++|++..++++.+ .+..|.+||..+.+....+.....+
T Consensus 27 ~~v~ViD~~~~~--v~g~i~-~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGR--VLGMTD-GGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCE--EEEEEE-ccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 889998887532 111111 1222222 3 7888766666667 6899999999999888777664443
Q ss_pred -------EEEEEcCCCCEEEEEe-C-CCeEEEEEccccceeeeecccceeeeeEE--------ecCCCEEEEecCCC---
Q 022716 112 -------INITYKPDGTHIAVGN-R-DDELTILDVRKFKPIHRRKFGYEVNEIAW--------NMTGEMFFLTTGNA--- 171 (293)
Q Consensus 112 -------~~~~~~~~~~~l~~~~-~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~--------~~~~~~~~~~~~~~--- 171 (293)
..++++|||+++++.. . ++.+.+.|+.+.+.+.+...+.....+.. ..++....+.....
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence 3789999999998776 4 68999999999887776654332222222 22333222111110
Q ss_pred CEEE--E------------EECC-CCCEEEEecCCCcEEEEeCCC-----CEEEEEeecc-------CCCeeEEEEccCC
Q 022716 172 GCYC--I------------AIDP-MGRYFAVGSADSLVSLWDISE-----MLCVRTFTKL-------EWPVRTISFSHTG 224 (293)
Q Consensus 172 ~~~~--~------------~~~~-~~~~l~~gs~d~~i~iwd~~~-----~~~~~~~~~~-------~~~v~~l~~sp~~ 224 (293)
.... + .+.+ +++++.+... |+|.+.|+.. ......+... ...+.-++++|++
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg 259 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR 259 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCC
Confidence 0000 0 1123 7777766666 9999999533 2222222111 1224459999999
Q ss_pred CEEEEec----------CCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eEEEEEc-CCCCCCCCc
Q 022716 225 DYIASAS----------EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAGD-DKNKYQADE 282 (293)
Q Consensus 225 ~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~~-d~~~~~~~~ 282 (293)
+.+.... ..+.|.++|..+++.+..+.....+..++++|+++ +|.++.. ++.+.+.|-
T Consensus 260 ~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 260 DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 9887642 12579999999999999998888899999999999 6665553 444444443
No 245
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.2e-10 Score=98.72 Aligned_cols=257 Identities=19% Similarity=0.289 Sum_probs=160.1
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-----------CCeE
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-----------DKTV 91 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-----------d~~i 91 (293)
=+-+.|||-|.+|+|=-..| |.+|-=.+. .. +..-.|. .|..+.|+|. ..+|+|=+. ...+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f--~r---~~RF~Hp-~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESF--DR---IQRFYHP-GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccH--HH---HHhccCC-CceeeecCCc-cceEEEecCCccccCcccCCCceE
Confidence 36789999999999987766 678842211 11 1122454 4788889986 567887654 2568
Q ss_pred EEEeCCCCeeeeeeee--cCce-E-EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc-cceeeeeEEecCCCEEEE
Q 022716 92 RLWDARSGKCSQQAEL--SGEN-I-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~--~~~~-~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 166 (293)
+|||+.+|.....+.. .... . -..|+.|+++++.-.. +.|.+++..++.++..... -..++.+.|+|.+..+..
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 9999999987776654 2221 1 3679999999987765 6788888776554433322 234666777776655442
Q ss_pred ecCC----------------------------------------------------------------------------
Q 022716 167 TTGN---------------------------------------------------------------------------- 170 (293)
Q Consensus 167 ~~~~---------------------------------------------------------------------------- 170 (293)
....
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve 443 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE 443 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee
Confidence 2110
Q ss_pred --CCEEEEEECCCCCEEEEecC---CCcEEEEeCCC-CEEEEEeecc-CCCeeEEEEccCCCEEEEe---cCCCcEEEEE
Q 022716 171 --AGCYCIAIDPMGRYFAVGSA---DSLVSLWDISE-MLCVRTFTKL-EWPVRTISFSHTGDYIASA---SEDLFIDISN 240 (293)
Q Consensus 171 --~~~~~~~~~~~~~~l~~gs~---d~~i~iwd~~~-~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~---s~d~~i~iw~ 240 (293)
..+...+|.|.|+.+++-+. ..++.+|..++ .......+.. ....+.+.|+|.|++++.+ |..|.+.++|
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 11334577788876544332 35677777652 2111111111 2356889999999998776 4578899999
Q ss_pred cCCCCE-EEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 241 VHTGRT-VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 241 ~~~~~~-~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
..-... ....+.+-..+.+.|.|.|.|+++++.-..-. .+.-.|||.|
T Consensus 524 ~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk--~d~GYri~tf 572 (698)
T KOG2314|consen 524 TDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK--VDNGYRIFTF 572 (698)
T ss_pred cchhhhhhccCccccccccceECCCCCEEEEeeehhhhc--cccceEEEEe
Confidence 863221 12233445678899999999999998643111 1122477765
No 246
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.41 E-value=9.6e-13 Score=116.05 Aligned_cols=223 Identities=22% Similarity=0.349 Sum_probs=158.1
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
...-||.+.|+.++.+....+++++|.|..|++|.+... . ....+.+|++.|++++|+|.. +.+.||++++
T Consensus 226 As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~---~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~ 296 (1113)
T KOG0644|consen 226 ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG---A-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRI 296 (1113)
T ss_pred ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC---c-hHHHHhccccceeeeccCccc-----cCCCCCceEe
Confidence 456799999999999999999999999999999988642 1 122478999999999999853 6788999999
Q ss_pred EeCCCCeeee-----eeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-----eeee-ec---------ccceee
Q 022716 94 WDARSGKCSQ-----QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-----PIHR-RK---------FGYEVN 153 (293)
Q Consensus 94 wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-----~~~~-~~---------~~~~~~ 153 (293)
||.+-..... .+.....+.++.|...+..+++++.|++-..|.+.... .... .. -...+.
T Consensus 297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR 376 (1113)
T ss_pred ccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE
Confidence 9987221111 12223445566777778888999988887776543211 0000 00 011233
Q ss_pred eeEEecC-CCEE-EEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716 154 EIAWNMT-GEMF-FLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 154 ~v~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 230 (293)
.+.|+.. +.+. ....+....+.+.+||-+. +..+++.||...|||+..+.+++....-...+...+||++|+.++..
T Consensus 377 ~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 377 LCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred eeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence 3455542 2111 1234556788899999764 56788999999999999887776654445678888999999999998
Q ss_pred cCCCcEEEEEcCCCC
Q 022716 231 SEDLFIDISNVHTGR 245 (293)
Q Consensus 231 s~d~~i~iw~~~~~~ 245 (293)
..-|.++|.....++
T Consensus 457 d~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 457 DDHGQLYILGTGQSK 471 (1113)
T ss_pred CCCCceEEeccCCCc
Confidence 888999999876554
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.2e-10 Score=99.22 Aligned_cols=219 Identities=15% Similarity=0.193 Sum_probs=130.6
Q ss_pred CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEE-cCCCCEEEEEeCCCeEEEEE------
Q 022716 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY-KPDGTHIAVGNRDDELTILD------ 136 (293)
Q Consensus 64 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~l~d------ 136 (293)
.|....+.+..+|++.-+++||..-..|++||+.+-.....-.+...++.+.. +.|-..++.-..|..|-+..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 46677888999998877788888899999999876544333333444433322 22212222222344333221
Q ss_pred -ccccceeeeecc---cceeee-------eEEecC-CCEE-EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE
Q 022716 137 -VRKFKPIHRRKF---GYEVNE-------IAWNMT-GEMF-FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 203 (293)
Q Consensus 137 -~~~~~~~~~~~~---~~~~~~-------v~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~ 203 (293)
++-...-+...+ ..++.. ..++.. |..+ -+....+.+.++.+++...+|++|+.+|.|..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 111100000000 000000 001111 1100 012223567889999999999999999999999998765
Q ss_pred EEEEee------ccCC-----CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEE
Q 022716 204 CVRTFT------KLEW-----PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAY 270 (293)
Q Consensus 204 ~~~~~~------~~~~-----~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~ 270 (293)
.+.++. .|.. .|+++.|+-+|-.++.|..+|.+.|||+.+.+.+....+ ..+|..+.|.+.+.+=..
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 444432 2222 399999999999999999999999999999887665543 558999999887433333
Q ss_pred EEcC-CCCCCCCc
Q 022716 271 AGDD-KNKYQADE 282 (293)
Q Consensus 271 ~~~d-~~~~~~~~ 282 (293)
.++| .-+.+|++
T Consensus 289 ~S~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 289 VSMDKRILKIWDE 301 (703)
T ss_pred EecchHHhhhccc
Confidence 3333 33444444
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=9.4e-10 Score=93.77 Aligned_cols=171 Identities=20% Similarity=0.252 Sum_probs=119.6
Q ss_pred EEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716 82 IATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 82 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
+++-..++.|.+.|..+.+.+..+...+. ...+.++|||+++.+.+.|+.+.++|+.+.+.+.+...+..
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~--------- 79 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN--------- 79 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---------
Confidence 34566789999999999888888876554 45678999999999999999999999999887766554433
Q ss_pred CCEEEEecCCCCEEEEEECCCCCEEEEec-CCCcEEEEeCCCCEEEEEeecc-------CCCeeEEEEccCCCEEEEec-
Q 022716 161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTKL-------EWPVRTISFSHTGDYIASAS- 231 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l~s~s- 231 (293)
...++++++|++++++. .++.+.++|.++.+.++.+... ...+.++-.+|....++..-
T Consensus 80 ------------~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 80 ------------PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp ------------EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred ------------cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 34678889999988775 6899999999999888876543 23577888889888555554
Q ss_pred CCCcEEEEEcCCCCEE--EEEecCCCcceeEECCCCCeEEEEEc
Q 022716 232 EDLFIDISNVHTGRTV--HQIPCRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 232 ~d~~i~iw~~~~~~~~--~~~~~~~~i~~~~~sp~~~~la~~~~ 273 (293)
+-+.|.+-|....+.+ ..+..........|+|++.++..+..
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred cCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc
Confidence 4588888887766543 34555556778999999998877654
No 249
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=4.6e-12 Score=107.12 Aligned_cols=171 Identities=21% Similarity=0.322 Sum_probs=122.1
Q ss_pred EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee--ecCceEEEEEcC--CCCEEEEEeCCCeEEEE
Q 022716 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKP--DGTHIAVGNRDDELTIL 135 (293)
Q Consensus 60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~--~~~~l~~~~~d~~i~l~ 135 (293)
..+.||++.|+++.|+.+ +.+|+||+.|-.+.|||.-..+.+..+. +...+.++.|-| +.+.+++|..|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 357899999999999976 5799999999999999988766666554 334566888887 45789999999999999
Q ss_pred EccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEE-------EEE
Q 022716 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC-------VRT 207 (293)
Q Consensus 136 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~-------~~~ 207 (293)
|+...+.... -++... ......++-..+..|+.-|++ ..+.++++||+|+-+|++.... ...
T Consensus 123 dl~~~~~~~~-d~~~~~---------~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 123 DLDSSKEGGM-DHGMEE---------TTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred eccccccccc-ccCccc---------hhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 9875331110 011111 112233455566678888888 7789999999999999975211 111
Q ss_pred eec-c--CCCeeEEEEccCC-CEEEEecCCCcEEEEEc
Q 022716 208 FTK-L--EWPVRTISFSHTG-DYIASASEDLFIDISNV 241 (293)
Q Consensus 208 ~~~-~--~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~ 241 (293)
+.. + --...++.++|.. .+||.|+.|-++++||.
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 111 1 1246778999976 57899999999999994
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.1e-09 Score=93.23 Aligned_cols=115 Identities=20% Similarity=0.282 Sum_probs=84.9
Q ss_pred CCEEEEEECCCCCEEEE--ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec---CCCcEEEEEcCCCC
Q 022716 171 AGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS---EDLFIDISNVHTGR 245 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~--gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~d~~i~iw~~~~~~ 245 (293)
++|.++.|+|+++.+++ |-+--++.|||++-. .+..+ .+.+=+++-|+|.|++++.++ .-|.+.|||+.+.+
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 56788999999987654 556778999997543 34333 446778899999999998876 45889999999977
Q ss_pred EEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 246 TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 246 ~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
++-.+... .-+-++|+|+|.+|.++...=-+ +.+--+|||++.
T Consensus 348 ~i~~~~a~-~tt~~eW~PdGe~flTATTaPRl--rvdNg~Kiwhyt 390 (566)
T KOG2315|consen 348 LIAKFKAA-NTTVFEWSPDGEYFLTATTAPRL--RVDNGIKIWHYT 390 (566)
T ss_pred hccccccC-CceEEEEcCCCcEEEEEeccccE--EecCCeEEEEec
Confidence 77665432 34568999999999999865322 233447888874
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=1.7e-08 Score=85.89 Aligned_cols=230 Identities=17% Similarity=0.216 Sum_probs=138.6
Q ss_pred ccEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEe--e--------CCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 21 KKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIEL--R--------GHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~--~--------~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
.....++++|++++|+++.. +|.|.++++...+......... . .-.....++.++|++..++++.-...
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 45567899999999998875 8999999998642111111011 1 11234678899998655555555567
Q ss_pred eEEEEeCCCCe--eee--e--eeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccc-eeeeecccceeeeeEEecCC
Q 022716 90 TVRLWDARSGK--CSQ--Q--AELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 90 ~i~vwd~~~~~--~~~--~--~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~ 161 (293)
.|.+|+++... ... . ......+..++|+|+++++.+.. .+++|.++++.... ..... ..+.--+.+
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~------~~~~~~~~~ 240 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI------QTISTLPEG 240 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE------EEEESCETT
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE------EEeeecccc
Confidence 89999987654 322 1 22345678899999999887665 47889999887211 11110 000000000
Q ss_pred CEEEEecCCCCEEEEEECCCCCEEEEec-CCCcEEEEeCC--CC--EEEEEeeccCCCeeEEEEccCCCEEEEec-CCCc
Q 022716 162 EMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS--EM--LCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLF 235 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~--~~--~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~d~~ 235 (293)
..+......|+++|++++|.++. .+++|.+|++. ++ ..+..+.......+.++++|+|++|+.+. .++.
T Consensus 241 -----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 241 -----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp -----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred -----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 00112456789999999876655 57789999983 22 33334433344589999999999998776 5677
Q ss_pred EEEEEc--CCCCEEEEE--ecCCCcceeEE
Q 022716 236 IDISNV--HTGRTVHQI--PCRAAMNSVEW 261 (293)
Q Consensus 236 i~iw~~--~~~~~~~~~--~~~~~i~~~~~ 261 (293)
|.++++ ++|.+...- ..-....||.|
T Consensus 316 v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 316 VSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 888876 456543322 12233455655
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.1e-09 Score=93.16 Aligned_cols=218 Identities=20% Similarity=0.321 Sum_probs=145.0
Q ss_pred ccccEEEEEECCCC--CeEEE-----EeCCCcEEEeecCCCCCCcee-EEEeeCCcCCeeEEEEcCCCCCEEEEEeC--C
Q 022716 19 HKKKVHSVAWNCTG--TKLAS-----GSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASG--D 88 (293)
Q Consensus 19 h~~~v~~l~~s~~~--~~l~s-----~~~dg~v~iw~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~l~s~~~--d 88 (293)
|...|+.+++||-+ ..+|+ +|.=..||||........... ...+. -.+.| .+.|++.+..+|+-++. |
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-cccee-EEEeccCCceEEEEEEEeec
Confidence 56789999999863 34443 455678999987521111110 01111 11222 45788776666555544 3
Q ss_pred ---------CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEE
Q 022716 89 ---------KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 89 ---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
.++++.+++...+...+...+++.++.|+|+++.++++. --.++.++|++.. ++..
T Consensus 242 ktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~d------------ 308 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFD------------ 308 (566)
T ss_pred CCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEe------------
Confidence 357777777556666666678999999999999887765 3568889988752 2221
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCCCEEEEecC---CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC--
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE-- 232 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-- 232 (293)
...++-.++-|+|.|++++.++- .|.+.+||..+.+++..+... .-+...|+|||++++|+..
T Consensus 309 ----------f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 309 ----------FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred ----------CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccc
Confidence 22333456778888888777654 578999999997777665432 3566889999999988864
Q ss_pred ----CCcEEEEEcCCCCEEEEEecCCCcceeEECCC
Q 022716 233 ----DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 264 (293)
Q Consensus 233 ----d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~ 264 (293)
|+-++||+. +|..++.....+..-.++|-|-
T Consensus 377 RlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 377 RLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred cEEecCCeEEEEe-cCceeehhhhhHhHhheeeeec
Confidence 788999998 6777765544445777888763
No 253
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=2.1e-10 Score=103.68 Aligned_cols=180 Identities=16% Similarity=0.132 Sum_probs=136.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceE-----EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENI-----NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN 153 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~ 153 (293)
..+++.+..+..+.+||...+............. -+.++++.-++++|+.-+.+.+|+....+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn------------ 166 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN------------ 166 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC------------
Confidence 3467777888888999987765544433332221 23456666788999999999999875211
Q ss_pred eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecC
Q 022716 154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASE 232 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~ 232 (293)
....+..|.+.+..+.++-+|+++++.|+|.++++|++++.+.+. ..-+|...|..++|.|+ .++|++.
T Consensus 167 --------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ge 236 (967)
T KOG0974|consen 167 --------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGE 236 (967)
T ss_pred --------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEecc
Confidence 112456788889999999999999999999999999999887665 55689999999999999 9999999
Q ss_pred CCcEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 233 DLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 233 d~~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
|.++++|+... ..+..+. ....|..++-++...++++++.|+.+..|+
T Consensus 237 dctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 237 DCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999996643 3333442 234688999999888999999987655543
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.28 E-value=2.3e-10 Score=89.94 Aligned_cols=136 Identities=21% Similarity=0.197 Sum_probs=101.9
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee-EEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-CCe
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGK 100 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~ 100 (293)
-.++.|++.+..++++.++|.+.+-+... .... ...++.|.-.+....|+....+++++||.|+.+..||++ .++
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~---~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETE---MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecce---eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 45778899999999999999999533322 1111 125778998999889988778899999999999999998 333
Q ss_pred eeee--eeecCceEEEEEc-CCCCEEEEEeCCCeEEEEEcc-ccceeeeecccceeeeeEEecCC
Q 022716 101 CSQQ--AELSGENINITYK-PDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 101 ~~~~--~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~l~d~~-~~~~~~~~~~~~~~~~v~~~~~~ 161 (293)
++.. ..+...+.++.-+ |.+.++++|+.|..|++||.| -.+|+...+.+..|+.+.|+|.-
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 3332 2234456666555 467899999999999999999 46777777777778887776653
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=2.2e-07 Score=75.62 Aligned_cols=249 Identities=16% Similarity=0.210 Sum_probs=155.6
Q ss_pred ecCccccEEEEEECCCCCeEEEEeC---CCcEEEeecCCCCCCceeEE---EeeCCcCCeeEEEEcCCCCCEEEEEeC-C
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDI---ELRGHADSVDQLCWDPKHADLIATASG-D 88 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~~l~s~~~-d 88 (293)
...+...++-|+|+|+++.|.++-. +|.|-.|.++... +....+ ...++. -.-++.++++ ++++++.. -
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~~~g~~--p~yvsvd~~g-~~vf~AnY~~ 110 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQTLPGSP--PCYVSVDEDG-RFVFVANYHS 110 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccccCCCC--CeEEEECCCC-CEEEEEEccC
Confidence 3456678999999999999977644 5888888887531 222222 122222 2566777764 57777766 6
Q ss_pred CeEEEEeCCC-Ceee---eeeeecC----------ceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceee
Q 022716 89 KTVRLWDARS-GKCS---QQAELSG----------ENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVN 153 (293)
Q Consensus 89 ~~i~vwd~~~-~~~~---~~~~~~~----------~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~ 153 (293)
+.|.++.++. |... ....+.+ ++-...+.|++++|++... ..++.+|++...........
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~----- 185 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA----- 185 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-----
Confidence 8899998865 3322 1222222 2446778999999998874 45889999875443221110
Q ss_pred eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCCC-EEEEEeecc---------CCCeeEEEEcc
Q 022716 154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEM-LCVRTFTKL---------EWPVRTISFSH 222 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~-~~~~~~~~~---------~~~v~~l~~sp 222 (293)
. + ....+.--|+|||++++.-+. =-+++|.+|.+... ..+..++.+ .....+|..+|
T Consensus 186 ----------~-v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 186 ----------E-V-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ----------c-c-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 0 0 112233457888888875444 44889999988762 222222211 23577899999
Q ss_pred CCCEEEEec-CCCcEEEEEcCC-CCEEEE---EecCC-CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 223 TGDYIASAS-EDLFIDISNVHT-GRTVHQ---IPCRA-AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 223 ~~~~l~s~s-~d~~i~iw~~~~-~~~~~~---~~~~~-~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
||++|..+. ....|.++.+.. +.++.. .+..+ .-+...|+|.+++|+.++.++ ..+.+|..++
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s-------d~i~vf~~d~ 322 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS-------DNITVFERDK 322 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC-------CcEEEEEEcC
Confidence 999998775 344677777654 232322 23333 368899999999999999775 3455555543
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=8.2e-11 Score=111.57 Aligned_cols=198 Identities=17% Similarity=0.247 Sum_probs=138.4
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
|-..|.++.-+|...+-+||+.||.|++|..... ..+......|. ..|+.+.|+.++ +.+..+..||.+.+|....
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC
Confidence 3456777777788888999999999999976532 22222233344 778888898775 4566678899999998762
Q ss_pred CeeeeeeeecCc-eEEEEEcCCCCEEEEEe---CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 99 GKCSQQAELSGE-NINITYKPDGTHIAVGN---RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 99 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~---~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
+.....+.+.. ...++|-- ..+++.+ .++.+.+||... +....++-.+|..+.+
T Consensus 2283 -k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~-------------------~~~~s~v~~~H~~gaT 2340 (2439)
T KOG1064|consen 2283 -KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLL-------------------PPMNSLVHTCHDGGAT 2340 (2439)
T ss_pred -cceeccccCCccccceeeee--hhhhccccCCCCCcccchhccc-------------------CcccceeeeecCCCce
Confidence 22222222222 12233432 3455544 356889999532 1222334478889999
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 252 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~ 252 (293)
++++-|....+++|+.+|.|.+||+++...++.++. +. ...++++|+..|.++||++.....++.++.
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999999999999999999999999988765555433 33 567899999999999999988777776654
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=4.5e-09 Score=89.93 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=123.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeeeee----ecCceEEEEEc--------------------CCCCEEEEEeCCCeEE
Q 022716 78 HADLIATASGDKTVRLWDARSGKCSQQAE----LSGENINITYK--------------------PDGTHIAVGNRDDELT 133 (293)
Q Consensus 78 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----~~~~~~~~~~~--------------------~~~~~l~~~~~d~~i~ 133 (293)
...+++....||.+++||...++....+. ..+..++..|. -+-..++-|...|.+.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 34678888999999999998876544332 22333332221 1223466677777777
Q ss_pred EEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC
Q 022716 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW 213 (293)
Q Consensus 134 l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~ 213 (293)
+++....+..... .-.++.+.+.++..+.+-.++-+++.|+.+.+|+......+..+..-..
T Consensus 84 ~ys~~~g~it~~~------------------st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~ 145 (541)
T KOG4547|consen 84 LYSVAGGEITAKL------------------STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP 145 (541)
T ss_pred EEEecCCeEEEEE------------------ecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC
Confidence 7776654432221 1134556677777777788899999999999999999988888888888
Q ss_pred CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCC
Q 022716 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPK 264 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~ 264 (293)
.+.+++++|||..|++|+. .|++||+++++.+..+.+ .++|+.+.|-.+
T Consensus 146 ~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 8999999999999999874 699999999999887764 567999999766
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=2.2e-09 Score=91.81 Aligned_cols=191 Identities=19% Similarity=0.227 Sum_probs=133.8
Q ss_pred CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC-cCCeeEEEE------cC-------------CCCCEEEEEeCC
Q 022716 29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCW------DP-------------KHADLIATASGD 88 (293)
Q Consensus 29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-~~~i~~~~~------~~-------------~~~~~l~s~~~d 88 (293)
.|.+.++|....||.+|+|+...+.... ...-..| ++...+..| +| .+...++-|...
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~--e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQ--EFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeee--eeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 3556789999999999999987542110 0000011 111122222 11 134567788889
Q ss_pred CeEEEEeCCCCeeeeeee---ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 89 KTVRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
|.|.+|++..++....+. +.+.+.++.+..+-.-+.+++.|..+..|+....+..+..+
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~------------------ 141 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK------------------ 141 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec------------------
Confidence 999999999988776655 33455566667666778899999999999987655433221
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC-----CCEEEE-ecCCCcEEEE
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-----GDYIAS-ASEDLFIDIS 239 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~s-~s~d~~i~iw 239 (293)
+....+.+++++||+..+++++ +.|++||+++.+.+..|++|..+|++++|..+ |.++.+ +..+.-+.+|
T Consensus 142 --~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 142 --EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred --cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence 2233456788999999999887 46999999999999999999999999999877 666654 4566778888
Q ss_pred EcCC
Q 022716 240 NVHT 243 (293)
Q Consensus 240 ~~~~ 243 (293)
-+..
T Consensus 218 ~v~~ 221 (541)
T KOG4547|consen 218 VVEK 221 (541)
T ss_pred EEEc
Confidence 7654
No 259
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=9.1e-11 Score=98.00 Aligned_cols=228 Identities=18% Similarity=0.216 Sum_probs=160.2
Q ss_pred ecCccccEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 16 YTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
..||...|-.-.|-|. ...+++.+.||.|++=.+..... ......+..|.++|.-++..|.....|+|+++|+.+.-
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~ 259 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFH 259 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceee
Confidence 4588887777778764 45799999999999976653221 11133466799999999999988888999999999999
Q ss_pred EeCCCCeeeeeee---ecCc----eEEEEEcCCCC-EEEEEeCCCeEEEEEcccccee------ee------e-ccccee
Q 022716 94 WDARSGKCSQQAE---LSGE----NINITYKPDGT-HIAVGNRDDELTILDVRKFKPI------HR------R-KFGYEV 152 (293)
Q Consensus 94 wd~~~~~~~~~~~---~~~~----~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~------~~------~-~~~~~~ 152 (293)
.|++.+.....+. .+.. -..++..|... ++++++.|.-.+++|.+..... .. . .....|
T Consensus 260 ~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~I 339 (559)
T KOG1334|consen 260 IDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNI 339 (559)
T ss_pred eeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccc
Confidence 9988765432221 1111 23567777655 7899999999999998754321 11 1 112345
Q ss_pred eeeEEecCC-CE---------EEEecCC--C------------------------CEEEE-EECCCCCEEEEecCCCcEE
Q 022716 153 NEIAWNMTG-EM---------FFLTTGN--A------------------------GCYCI-AIDPMGRYFAVGSADSLVS 195 (293)
Q Consensus 153 ~~v~~~~~~-~~---------~~~~~~~--~------------------------~~~~~-~~~~~~~~l~~gs~d~~i~ 195 (293)
..++++..+ ++ +++.... + .|..+ .|.|...++++|+.-|.|-
T Consensus 340 Tgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF 419 (559)
T KOG1334|consen 340 TGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF 419 (559)
T ss_pred eeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEE
Confidence 666666332 22 1111110 0 01222 3568889999999999999
Q ss_pred EEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716 196 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244 (293)
Q Consensus 196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~ 244 (293)
||+-.+++.++-+.+..--|++|.=+|--..||+.+-|..|+||...+-
T Consensus 420 iW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 420 IWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred EEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 9999888877767666668999999999999999999999999988543
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=1.1e-07 Score=91.47 Aligned_cols=245 Identities=12% Similarity=0.055 Sum_probs=144.4
Q ss_pred EEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC------------CcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 24 HSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRG------------HADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 24 ~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~------------h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
..++++++ ++.+++-+.++.|+++|.+.. ......-.+ +-..-..+++.+++..++++-..+..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 46788875 556677777899999997532 111110001 11224577887765445555556788
Q ss_pred EEEEeCCCCeeeeeee-----------------ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeeccccee
Q 022716 91 VRLWDARSGKCSQQAE-----------------LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~ 152 (293)
|+++|..++....... .-..+..++++| ++..+++...+++|.+||..+.....-...+...
T Consensus 648 Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 648 LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999987764321110 012345789999 5566677777899999998664321100000000
Q ss_pred eeeEEecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeec-------------c-------
Q 022716 153 NEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTK-------------L------- 211 (293)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~-------------~------- 211 (293)
. ..+.. .....-.....++++|+++ .+++-+.++.|++||++++.......+ .
T Consensus 728 ---~--~~g~~-~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 728 ---N--LNGSS-GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred ---c--CCCCc-cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 0 00000 0000112345689999987 556667778999999886542110000 0
Q ss_pred -CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------------CCcceeEECCCCCeEEEEEcCCC
Q 022716 212 -EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 212 -~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------------~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
-.....++++|+|+.+++.+.++.|++||..++......... .....|+++|+|+++++-+.+..
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 112468999999998899999999999999877654322211 13457899999987766655543
Q ss_pred C
Q 022716 277 K 277 (293)
Q Consensus 277 ~ 277 (293)
+
T Consensus 882 I 882 (1057)
T PLN02919 882 I 882 (1057)
T ss_pred E
Confidence 3
No 261
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=7.3e-08 Score=83.75 Aligned_cols=183 Identities=9% Similarity=0.018 Sum_probs=113.2
Q ss_pred CeeEEEEcCCCCCEEEEEeC---CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-C--CeEEEEEccccc
Q 022716 68 SVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-D--DELTILDVRKFK 141 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d--~~i~l~d~~~~~ 141 (293)
......|+|++..+++..+. +..|.++|+.+++........+......|+|||+.++.... + ..+.++|+.+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 55677899987653443333 45688889988876655555566667889999988765442 3 467777776554
Q ss_pred eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCCCeeEE
Q 022716 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWPVRTI 218 (293)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l 218 (293)
..+.... ........|+|||+.++-.+. .+ .|.+.|+..+...+... .... ..
T Consensus 269 ~~~LT~~---------------------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~ 324 (419)
T PRK04043 269 LTQITNY---------------------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NS 324 (419)
T ss_pred EEEcccC---------------------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--Cc
Confidence 3222111 111123357777766555443 23 57777887765433221 1111 24
Q ss_pred EEccCCCEEEEecCC---------CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 219 SFSHTGDYIASASED---------LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 219 ~~sp~~~~l~s~s~d---------~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.|+|+|++++..+.. ..|.+.|..++.. +.+..........|+|||..|+....++
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEEccC
Confidence 899999988766543 2578888877764 3443333344689999999999987653
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=8e-07 Score=74.62 Aligned_cols=210 Identities=15% Similarity=0.144 Sum_probs=124.2
Q ss_pred ECCCCCeEEEEeC----------CCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcCCCCCEEEEEe-C-CCe
Q 022716 28 WNCTGTKLASGSV----------DQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATAS-G-DKT 90 (293)
Q Consensus 28 ~s~~~~~l~s~~~----------dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~~~~~~l~s~~-~-d~~ 90 (293)
+||||+.|..+.. +..|.+||..+.. ....+.+..- -..-..+.++|++. .|+... . +..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~~~~~ls~dgk-~l~V~n~~p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYPWMTSLTPDNK-TLLFYQFSPSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCccceEEECCCCC-EEEEecCCCCCE
Confidence 8999999876655 8999999997542 2222222111 11223567788764 444343 3 789
Q ss_pred EEEEeCCCCeeeeeeeecCceEE--------EEEcCCCCEEEEEe-CCCeEE-----EEEccccceeeeecccceeeeeE
Q 022716 91 VRLWDARSGKCSQQAELSGENIN--------ITYKPDGTHIAVGN-RDDELT-----ILDVRKFKPIHRRKFGYEVNEIA 156 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~-~d~~i~-----l~d~~~~~~~~~~~~~~~~~~v~ 156 (293)
|.+.|+.+++.+..+...+...- +....||+.+.... .+|+.. +++... .++.... .
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~-~~v~~rP--------~ 200 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED-EYLINHP--------A 200 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc-cccccCC--------c
Confidence 99999999988776665442222 22234444333221 122211 111100 0000000 0
Q ss_pred Eec-CCCEEEEecC--------------------------------CCCEEEEEECCCCCEEEEec----------CCCc
Q 022716 157 WNM-TGEMFFLTTG--------------------------------NAGCYCIAIDPMGRYFAVGS----------ADSL 193 (293)
Q Consensus 157 ~~~-~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~l~~gs----------~d~~ 193 (293)
+.+ ++..++++.. .....-++++|+++.+.+.. ..+.
T Consensus 201 ~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 201 YSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred eEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 011 1111111111 11223489999988877642 2257
Q ss_pred EEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec-CCCcEEEEEcCCCCEEEEE
Q 022716 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~d~~i~iw~~~~~~~~~~~ 250 (293)
|.++|.++++.+..+.- ...+..++++||++ +|++.. .++.|.+.|..+++.++.+
T Consensus 281 V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99999999998887643 45889999999999 777665 6788999999999998887
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.13 E-value=8.6e-09 Score=82.96 Aligned_cols=253 Identities=12% Similarity=0.113 Sum_probs=164.5
Q ss_pred cccccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 8 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
++....+.+.||.+.|.+...-|-.+-+.+.+.|.++|+|--.+.. .....+. .....+++++.+.++ ...|+.|-.
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~-q~wpsI~-~~mP~~~~~~~y~~e-~~~L~vg~~ 88 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSG-QYWPSIY-HYMPSPCSAMEYVSE-SRRLYVGQD 88 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccc-ccCchhh-hhCCCCceEeeeecc-ceEEEEEEe
Confidence 4455667789999999999988888889999999999999533211 1111221 123456888888876 456777888
Q ss_pred CCeEEEEeCCCC----eeeee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716 88 DKTVRLWDARSG----KCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 88 d~~i~vwd~~~~----~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
+|++.-+.+... ...+. ..+...+..+.|+...+++++.+.|..+..--.+....+...
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y---------------- 152 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY---------------- 152 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce----------------
Confidence 888877654211 11111 123344556777777788888888877654433333322211
Q ss_pred EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC--CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
.+.+.... +.++ -.+...|...|.|.+-.+ .....+.++.+|..++.+++|.|..+.|.+|+.|..+.+||
T Consensus 153 --~~~~~~t~---~~~d--~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 153 --NFETPASA---LQFD--ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred --EeeccCCC---Ccee--eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 11111111 1111 115566777777666554 34456778899999999999999999999999999999999
Q ss_pred cCCCCE--EEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEE
Q 022716 241 VHTGRT--VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFR 286 (293)
Q Consensus 241 ~~~~~~--~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~ 286 (293)
+-..+. .....+...+..+..-+.-.++.+++.|+.+-.|++.+.|
T Consensus 226 igg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 226 IGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 865443 2334455678888887878889999988654444444333
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.5e-07 Score=81.74 Aligned_cols=191 Identities=13% Similarity=0.075 Sum_probs=113.3
Q ss_pred cEEEEEECCCCCe-EEEEeCC---CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC--CeEEEEe
Q 022716 22 KVHSVAWNCTGTK-LASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWD 95 (293)
Q Consensus 22 ~v~~l~~s~~~~~-l~s~~~d---g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd 95 (293)
.+....|+|||+. ++..+.+ ..|.++|+... .... +....+......|+|++..++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~~--lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KKEK--IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cEEE--EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 6778999999985 6654444 45667777542 2222 222334455678999877777776654 4577778
Q ss_pred CCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716 96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
+.++.........+......|+|||+.++..+. .+ .|.++|+.+....+....+ .
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--------------------~-- 321 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--------------------K-- 321 (419)
T ss_pred CCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--------------------C--
Confidence 877765443333333445689999998877763 23 5666677654432211100 0
Q ss_pred EEEEEECCCCCEEEEecCC---------CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC-Cc--EEEEE
Q 022716 173 CYCIAIDPMGRYFAVGSAD---------SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED-LF--IDISN 240 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d-~~--i~iw~ 240 (293)
....++|+|+.++..+.. ..|.+.|+..+.. +.++... ......|+|||+.++..+.+ +. +.+.+
T Consensus 322 -~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 322 -NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 012566777665554433 3678888877753 3444332 33457899999988666543 23 45555
Q ss_pred cC
Q 022716 241 VH 242 (293)
Q Consensus 241 ~~ 242 (293)
+.
T Consensus 399 l~ 400 (419)
T PRK04043 399 LN 400 (419)
T ss_pred cC
Confidence 53
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=1.7e-07 Score=90.20 Aligned_cols=218 Identities=11% Similarity=0.161 Sum_probs=137.2
Q ss_pred cEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCC---------------cCCeeEEEEcCCCCCEEEEE
Q 022716 22 KVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGH---------------ADSVDQLCWDPKHADLIATA 85 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h---------------~~~i~~~~~~~~~~~~l~s~ 85 (293)
....++++++++.|..+.. .+.|+.+|+... ....+.-.+. -..-..++++|+++.++++.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNE---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCC---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 3578899998887655544 578888887542 1111100000 01234688888666788888
Q ss_pred eCCCeEEEEeCCCCeeeeeee---------------ecCceEEEEEcCCCCEEE-EEeCCCeEEEEEccccceeeeeccc
Q 022716 86 SGDKTVRLWDARSGKCSQQAE---------------LSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFG 149 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~-~~~~d~~i~l~d~~~~~~~~~~~~~ 149 (293)
+.+..|++||..++....... .-..+..++++|+++.|+ +.+.+++|++||+++........ +
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g-g 780 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG-G 780 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-c
Confidence 889999999987765421100 012345689999998554 55567899999987644211100 0
Q ss_pred cee---eeeEEec-CCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--------------
Q 022716 150 YEV---NEIAWNM-TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------------- 211 (293)
Q Consensus 150 ~~~---~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-------------- 211 (293)
... ....+.. ++.. ....-.....++++++|+.+++-+.+++|++||..++.... +.+.
T Consensus 781 ~~~~~~~l~~fG~~dG~g--~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVG--SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred ccccCcccccccCCCCch--hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccc
Confidence 000 0000100 0000 00001124578899999999999999999999998775442 2221
Q ss_pred CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
-.....|+++++|+.+++.+.++.|++||..+++.
T Consensus 858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 12467899999999999999999999999988764
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.09 E-value=7.1e-09 Score=83.45 Aligned_cols=241 Identities=17% Similarity=0.291 Sum_probs=144.0
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
.+|.-.|.++.++.|+..++++. |=.|-+|+++..... ......+.+ ...|++..|+|.....++-.+.-|+|
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~s-FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQS-FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCc-eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 47888999999999999888875 788899998743211 111122222 24688889999888888888999999
Q ss_pred EEEeCCCCe-eeee---eeec-------------CceEEEEEcCCCCEEEEEeCCCeEEEEEcc-ccceeeeecccceee
Q 022716 92 RLWDARSGK-CSQQ---AELS-------------GENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGYEVN 153 (293)
Q Consensus 92 ~vwd~~~~~-~~~~---~~~~-------------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~-~~~~~~~~~~~~~~~ 153 (293)
++-|++... |... ++.. ..+..+.|+++|+++++-. -.++++||++ ..+|+.........+
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHH
Confidence 999997442 1111 1111 1223488999999998753 4799999984 334443322110000
Q ss_pred eeEEecCCCEEEEecCCC---CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCC--CeeEEEEccCCCEE
Q 022716 154 EIAWNMTGEMFFLTTGNA---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEW--PVRTISFSHTGDYI 227 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~--~v~~l~~sp~~~~l 227 (293)
. ++-.+- .++ .-.-++|+-++.++++|+-.+..++|+...+.... ++..... ++.++ ..-+.+
T Consensus 318 ~-------kLc~lY-EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V 386 (433)
T KOG1354|consen 318 S-------KLCSLY-ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLV 386 (433)
T ss_pred H-------HHHHHh-hccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceee
Confidence 0 000000 001 12346788889999999999999999976654221 2211111 22332 122334
Q ss_pred EEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 228 ASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 228 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
++++......++ +..+.....|--.+|||..+.+|.+..+ |+|+
T Consensus 387 ~~~g~r~~~~~~-------vd~ldf~kkilh~aWhp~en~ia~aatn-nlyi 430 (433)
T KOG1354|consen 387 SSSGKRKRDEIS-------VDALDFRKKILHTAWHPKENSIAVAATN-NLYI 430 (433)
T ss_pred ecCCCccccccc-------cchhhhhhHHHhhccCCccceeeeeecC-ceEE
Confidence 444443332222 1223334456677999999999999654 4444
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.09 E-value=3.4e-07 Score=86.63 Aligned_cols=257 Identities=15% Similarity=0.228 Sum_probs=159.0
Q ss_pred ccEEEEEECCCCCeEE--EEeCCC--cEEEeecCCCCCCceeEEEee-----CCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 21 KKVHSVAWNCTGTKLA--SGSVDQ--TARVWHIEPHGHGKVKDIELR-----GHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~--s~~~dg--~v~iw~~~~~~~~~~~~~~~~-----~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+...+|.+..+.+. ++.... .|.+-...... .......+. ...+.|.++.+.++. ..++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~~~~~~~~~~ivs~~yl~d~-~~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDG-SVEVLASWDAPLPDDPNDKIVSFQYLADS-ESLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCC-ceeEEEeccccCCcCCCCcEEEEEeccCC-CcEEEEECCceE
Confidence 3577778877766543 333333 23333222111 111112222 234568888888865 456667888999
Q ss_pred EEE----eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc------eeeeeEEecCC
Q 022716 92 RLW----DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY------EVNEIAWNMTG 161 (293)
Q Consensus 92 ~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~------~~~~v~~~~~~ 161 (293)
.+. +.........-.....+.+++|+||+..|+..+.++++.+.+ +++.++.+..... .--.|.|....
T Consensus 100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCccc
Confidence 988 655555444445677888999999999999999999998875 5555555443211 12234454332
Q ss_pred CEE-----------------------EEecCCCCEEEEEECCCCCEEEEecC---C---CcEEEEeCCCCEEEEEeeccC
Q 022716 162 EMF-----------------------FLTTGNAGCYCIAIDPMGRYFAVGSA---D---SLVSLWDISEMLCVRTFTKLE 212 (293)
Q Consensus 162 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~gs~---d---~~i~iwd~~~~~~~~~~~~~~ 212 (293)
..+ .+. .+..-..|+|-.||.++|+.+- . ..+++|+-+ |....+-....
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~ 256 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD 256 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC
Confidence 111 011 3345678999999999999875 2 579999865 55443333333
Q ss_pred CCeeEEEEccCCCEEEEecC---CCcEEEEEcCCCCEEEEEe-----cCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716 213 WPVRTISFSHTGDYIASASE---DLFIDISNVHTGRTVHQIP-----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV 284 (293)
Q Consensus 213 ~~v~~l~~sp~~~~l~s~s~---d~~i~iw~~~~~~~~~~~~-----~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~ 284 (293)
+--.+++|-|.|+++|+.-. ...|.+|--+ |..-..+. ....|..++|++++..||..-.|+
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~--------- 326 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR--------- 326 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC---------
Confidence 33456899999999998754 2335555432 32222222 245789999999999999977553
Q ss_pred EEEEeeec
Q 022716 285 FRIYGFEN 292 (293)
Q Consensus 285 ~~~~~~~~ 292 (293)
+++|..-|
T Consensus 327 vqLWt~~N 334 (928)
T PF04762_consen 327 VQLWTRSN 334 (928)
T ss_pred ceEEEeeC
Confidence 67776554
No 268
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.08 E-value=4.9e-09 Score=95.07 Aligned_cols=191 Identities=11% Similarity=0.095 Sum_probs=136.7
Q ss_pred EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCe--e-EE--EEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV--D-QL--CWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i--~-~~--~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
...+.-+..+++.+..++.+-+||..... ...+. .+...+ . ++ ..+++ .-.+++|+--+.|.+|+....
T Consensus 92 g~~l~~e~k~i~l~~~~ns~~i~d~~~~~----~~~~i-~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 92 GAKLFEENKKIALVTSRNSLLIRDSKNSS----VLSKI-QSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccchhhhcceEEEEEcCceEEEEecccCc----eehhc-CCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEecccc
Confidence 34455567889999999999999975321 11111 111111 1 11 12222 346788888899999997622
Q ss_pred e-eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 100 K-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 100 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
. ..+...+.+.+..+.++-||.++++.+.|.++++|++.+.+......+ .|.+.+..+.+
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f-------------------gHsaRvw~~~~ 226 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF-------------------GHSARVWACCF 226 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc-------------------cccceeEEEEe
Confidence 2 222334567788899999999999999999999999988664432111 34556777888
Q ss_pred CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
+|+ .+++++.|.+.++|+. ++..+..+.+|. ..+..++..++...++|++.|+.+++|+...
T Consensus 227 ~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 227 LPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 887 8999999999999965 344455777776 4689999999999999999999999999764
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.08 E-value=1.1e-07 Score=74.26 Aligned_cols=204 Identities=10% Similarity=0.031 Sum_probs=132.3
Q ss_pred EEEEECC-----CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 24 HSVAWNC-----TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 24 ~~l~~s~-----~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
+.+.|.| ....||.||.-|...+|...++.. ... ....|...|.-+.-..+...-+.-++.|.++++.++..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-h~~--~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-HLY--QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCccc-cee--eecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 3455555 234789999999999998875421 111 12234433322211112223355678999999988765
Q ss_pred Ceeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716 99 GKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177 (293)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
+......... -...++++++|++++++.+....|..+.+........ ....+...++-.+..
T Consensus 148 ~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~-----------------~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 148 DSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE-----------------NIYEAPTSDHGFYNS 210 (344)
T ss_pred CcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee-----------------eeEecccCCCceeee
Confidence 4332222222 1245789999999999999889999988765332111 112333444556788
Q ss_pred ECCCCCEEEEecCCCcEEEEeCCCCEEEE-----EeeccCCCeeEEEEccCCC--EEEEecCCCcEEEEEcCCCCEE
Q 022716 178 IDPMGRYFAVGSADSLVSLWDISEMLCVR-----TFTKLEWPVRTISFSHTGD--YIASASEDLFIDISNVHTGRTV 247 (293)
Q Consensus 178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~l~~sp~~~--~l~s~s~d~~i~iw~~~~~~~~ 247 (293)
|+.....+|+++.||++.|||++....+. +-..|.+.++.+.|+|-|. +|...-.-+.+.+.|.++++..
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 88899999999999999999998653322 1224678999999999764 4555555677899999887643
No 270
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.7e-09 Score=86.97 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=113.1
Q ss_pred EEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716 82 IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 82 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (293)
-++.+.+..|-+-|+.++.... +...+.+.+..|.-.+..+..|...|.|..+|+|....-. +
T Consensus 227 hfs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~----------------~ 289 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN----------------G 289 (425)
T ss_pred eecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC----------------C
Confidence 3677788888888888875433 3355666677788878899999999999999998652110 1
Q ss_pred CEEEEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEE---EEEeeccCCCeeEEE--EccCCCEEEEecCCCc
Q 022716 162 EMFFLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLC---VRTFTKLEWPVRTIS--FSHTGDYIASASEDLF 235 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~--~sp~~~~l~s~s~d~~ 235 (293)
.......+++.++++-.-. ++.+|++.+.+|+|.+||++--++ +.+..+|.+.-..+- ..+....++++++|..
T Consensus 290 ~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 290 WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE
Confidence 1112233455566665444 688999999999999999986555 677777765433333 3456778899999999
Q ss_pred EEEEEcCCCCEEEEEecCC
Q 022716 236 IDISNVHTGRTVHQIPCRA 254 (293)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~ 254 (293)
.+||.++.|+.+..++...
T Consensus 370 tRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EEEEecccCceeeccCCCC
Confidence 9999999999988876543
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=8.3e-10 Score=105.02 Aligned_cols=185 Identities=14% Similarity=0.180 Sum_probs=130.4
Q ss_pred eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc
Q 022716 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKF 140 (293)
Q Consensus 63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~ 140 (293)
+.+-..|..+.-+|... +.+||+.||.|++|.-..++.+..+.. ...+..+.|+.+|..+..+..||.+.+|....
T Consensus 2205 k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred ecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence 34456677777788654 677999999999999877776655443 34566788999999999999999999999762
Q ss_pred ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe---cCCCcEEEEeCCC--C-EEEEEeeccCCC
Q 022716 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG---SADSLVSLWDISE--M-LCVRTFTKLEWP 214 (293)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---s~d~~i~iwd~~~--~-~~~~~~~~~~~~ 214 (293)
++.... .+|+.......|-. ..++++ +.++.+.+||... + .++. +.|...
T Consensus 2283 k~~~s~--------------------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2283 KPYTSW--------------------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG 2338 (2439)
T ss_pred cceecc--------------------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCC
Confidence 222111 11222222222211 333443 3567899999642 2 2233 678999
Q ss_pred eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 215 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 215 v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
++.++|.|..+.|.+||.+|.|++||++..+.++.++. ++ ...+|++|+..+++.||..
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEc
Confidence 99999999999999999999999999988777776653 44 5678999998776666554
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.05 E-value=5.9e-09 Score=85.41 Aligned_cols=161 Identities=14% Similarity=0.207 Sum_probs=107.9
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEeCCCCe----eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec
Q 022716 72 LCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK 147 (293)
Q Consensus 72 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~ 147 (293)
+..++ .+.+++.+..+....+++..... +....-.......+.+..+.....++..-|.++.+|+-+..
T Consensus 68 ~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~------ 140 (390)
T KOG3914|consen 68 VLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD------ 140 (390)
T ss_pred cccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc------
Confidence 34444 35677777777776676654432 22223333444456665555665555555544444432210
Q ss_pred ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-eccCCCeeEEEEccCCCE
Q 022716 148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDY 226 (293)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~ 226 (293)
.+....+.+|-+.++.++++||+++++++..|..|++-.+.....+.++ -+|...|..++.-++ ..
T Consensus 141 ------------~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~ 207 (390)
T KOG3914|consen 141 ------------SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YL 207 (390)
T ss_pred ------------ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ce
Confidence 0222233455667889999999999999999999999888765555554 479889999998654 45
Q ss_pred EEEecCCCcEEEEEcCCCCEEEEEec
Q 022716 227 IASASEDLFIDISNVHTGRTVHQIPC 252 (293)
Q Consensus 227 l~s~s~d~~i~iw~~~~~~~~~~~~~ 252 (293)
|++||.|+++++||..+|+.++.++.
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccch
Confidence 99999999999999999998876643
No 273
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.05 E-value=1.6e-07 Score=79.40 Aligned_cols=259 Identities=20% Similarity=0.257 Sum_probs=154.3
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe--------
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-------- 90 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~-------- 90 (293)
..-++..++|||.|.+|++.... .|.+|.-.... ....+ .| ..|..+.|+|. +.+|+|=+..+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~----~l~~~-~~-~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA----KLVRF-RH-PDVKYLDFSPN-EKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchh----heeee-ec-CCceecccCcc-cceeeeeccCCccChhhccC
Confidence 45588999999999999877654 47888654321 11222 23 35778888886 467766554433
Q ss_pred -------EEEEeCCCCeeeeeeeecCce----------------------------------------------EEEEEc
Q 022716 91 -------VRLWDARSGKCSQQAELSGEN----------------------------------------------INITYK 117 (293)
Q Consensus 91 -------i~vwd~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~ 117 (293)
+.+||+.++..+..+...... ....++
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEec
Confidence 899999888765443322111 112344
Q ss_pred CCC--CEEEE-----EeCCCeEEEEEccccceeeeecc-cceeeeeEEecCCCEEEEec---------------------
Q 022716 118 PDG--THIAV-----GNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTT--------------------- 168 (293)
Q Consensus 118 ~~~--~~l~~-----~~~d~~i~l~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~--------------------- 168 (293)
|.+ ..|+. ...+.++++|.+.....+....+ ...--.+.|++.++.+.+..
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 432 22222 22445566666554333332221 11112244666555332211
Q ss_pred ----------CCCCEEEEEECCCCCEEEE--ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC---
Q 022716 169 ----------GNAGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED--- 233 (293)
Q Consensus 169 ----------~~~~~~~~~~~~~~~~l~~--gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--- 233 (293)
..+++...+|.|.++.+++ |-.+-.+.++|++.... +...+.+=+.+-|||.+++++.++=|
T Consensus 263 ~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~---~~~Pe~~rNT~~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 263 TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLR---FYFPEQKRNTIFFSPHERYILFAGFDNLQ 339 (561)
T ss_pred cccccceeccccccceeeeecccCCceeEEecccccceeecccccceE---EecCCcccccccccCcccEEEEecCCccc
Confidence 1245667788888876554 45788899999887622 33445556778899999999887644
Q ss_pred CcEEEEEcCCCCEEE-EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 234 LFIDISNVHTGRTVH-QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 234 ~~i~iw~~~~~~~~~-~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
|.+.+|+....-++- .+. .....-+.|+|+++++-++-.. .+.+.+-.++||++-
T Consensus 340 gni~i~~~~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~~ts--~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFN-GLNTSYCDWSPDGQFYDTDTTS--EKLRVDNSIKLWDVY 395 (561)
T ss_pred cceEEeccCCceEEEEEee-cCCceEeeccCCceEEEecCCC--cccccCcceEEEEec
Confidence 779999987654332 333 3345568999999887665432 224455667888874
No 274
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1e-08 Score=85.26 Aligned_cols=250 Identities=16% Similarity=0.151 Sum_probs=164.4
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-CCeEEEEeCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DKTVRLWDAR 97 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-d~~i~vwd~~ 97 (293)
|.+.|+-+.-+ -.+++.+|+.||.+|.|.-..- .+.--...+..|...|..++.+-+ +-++.|.+. |..++++|+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~d-g~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYD-GWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhcccc-ceeEeeccCcccceeEEEee
Confidence 77788877654 3568999999999999965420 111112245678888888777654 457778777 9999999987
Q ss_pred CCeeeeeeeecCceEEEE--EcCCCC--EEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716 98 SGKCSQQAELSGENINIT--YKPDGT--HIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~--~~~~~~--~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
+-.....+.....+-.+. .+|... .++++. .++.+.++|-+...+ ....+..-+..+
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~------------------q~~~fkklH~sP 146 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC------------------QDGYFKKLHFSP 146 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC------------------ccceecccccCc
Confidence 766554444443333333 333221 233333 467888888654321 111222335567
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEeCCC-CEE--------------EEEeeccCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716 173 CYCIAIDPMGRYFAVGSADSLVSLWDISE-MLC--------------VRTFTKLEWPVRTISFSHTGDYIASASEDLFID 237 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-~~~--------------~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~ 237 (293)
+.++.+.+.+..+++....|.|..|..+. ... +..+.....-..++.|+|+|..+++-+.|..|+
T Consensus 147 V~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR 226 (558)
T KOG0882|consen 147 VKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVR 226 (558)
T ss_pred eEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEE
Confidence 78888999999999999999999998762 111 112234455688999999999999999999999
Q ss_pred EEEcCCCCEEEEEe---------cCC-------------------------CcceeEECCCCCeEEEEEcCC--CCCCCC
Q 022716 238 ISNVHTGRTVHQIP---------CRA-------------------------AMNSVEWNPKYNLLAYAGDDK--NKYQAD 281 (293)
Q Consensus 238 iw~~~~~~~~~~~~---------~~~-------------------------~i~~~~~sp~~~~la~~~~d~--~~~~~~ 281 (293)
+..+.+|+.++.+. .++ .-..+.|...+++|.+|..=+ -+.+..
T Consensus 227 ~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t 306 (558)
T KOG0882|consen 227 GFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT 306 (558)
T ss_pred EEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec
Confidence 99999987553221 010 124678888899999998654 222344
Q ss_pred cceEEEEe
Q 022716 282 EGVFRIYG 289 (293)
Q Consensus 282 ~~~~~~~~ 289 (293)
+.++|||.
T Consensus 307 n~v~ri~g 314 (558)
T KOG0882|consen 307 NTVVRILG 314 (558)
T ss_pred CeEEEEec
Confidence 45566665
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.01 E-value=2.7e-07 Score=72.98 Aligned_cols=206 Identities=15% Similarity=0.238 Sum_probs=126.6
Q ss_pred CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEc--CCCCC-EEEEEeCCCeEEEEeCCCCeeeeeee-ecC------c
Q 022716 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD--PKHAD-LIATASGDKTVRLWDARSGKCSQQAE-LSG------E 110 (293)
Q Consensus 41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~--~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~------~ 110 (293)
-|.+.+|++.+........+....| ..+..+.|. +.+++ .++-+-..|.|.++..........+. ... .
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 3667788876543222222222233 334555553 23333 45556667888888654332211111 111 2
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCCEEEEec
Q 022716 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGS 189 (293)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs 189 (293)
..++.|++.+..++++..+|.+.+.+........... | ..++..+....|+. +.+.+.+|+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~---------w---------k~He~E~Wta~f~~~~pnlvytGg 185 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQT---------W---------KVHEFEAWTAKFSDKEPNLVYTGG 185 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccc---------c---------cccceeeeeeecccCCCceEEecC
Confidence 3467889999999999999988865543322111000 1 11222233344443 347889999
Q ss_pred CCCcEEEEeCC-CCEEEEE-eeccCCCeeEEEEcc-CCCEEEEecCCCcEEEEEcC-CCCEEEEEecCCCcceeEECCCC
Q 022716 190 ADSLVSLWDIS-EMLCVRT-FTKLEWPVRTISFSH-TGDYIASASEDLFIDISNVH-TGRTVHQIPCRAAMNSVEWNPKY 265 (293)
Q Consensus 190 ~d~~i~iwd~~-~~~~~~~-~~~~~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~~~~i~~~~~sp~~ 265 (293)
+|+.+..||++ ..+.+-. .+.|...|.+|.-+| .+.+++||+.|..|++||.+ -++.+..-+..+.|..+.++|.-
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 99999999998 4443433 456788899987775 57899999999999999998 46666655556789999999853
No 276
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1e-08 Score=89.90 Aligned_cols=245 Identities=17% Similarity=0.225 Sum_probs=158.4
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+.+.||++.|.-+.|+.+...|-|...+|-|.+|-+.....-.-. .-...+..|.+++|+.++ ..+.-.-.||.|.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM--iNnRnKSvV~SmsWn~dG-~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM--INNRNKSVVVSMSWNLDG-TKICIVYEDGAVI 140 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH--hhCcCccEEEEEEEcCCC-cEEEEEEccCCEE
Confidence 4678899999999999998888999999999999988643210000 001234568899998875 4566677788877
Q ss_pred EEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee------------ecccceeeeeEEec
Q 022716 93 LWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR------------RKFGYEVNEIAWNM 159 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~------------~~~~~~~~~v~~~~ 159 (293)
+=.++..+ +.--++.+. ...+.|++|.+.++.+-..|.++++|....-..+. ..++..+..+.|..
T Consensus 141 VGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~ 219 (1189)
T KOG2041|consen 141 VGSVDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT 219 (1189)
T ss_pred EEeeccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence 65554332 221122222 23588999999999998999999999754321111 01222333344432
Q ss_pred CCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCC----
Q 022716 160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDL---- 234 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---- 234 (293)
.. -.-+-|+...++++-.+|.+.|..-.+- .++ .+ .....+....|+|+|..||.++.|.
T Consensus 220 g~-------------~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~-dtgm~~vgakWnh~G~vLAvcG~~~da~~ 284 (1189)
T KOG2041|consen 220 GP-------------YQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VV-DTGMKIVGAKWNHNGAVLAVCGNDSDADE 284 (1189)
T ss_pred Cc-------------cccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EE-ecccEeecceecCCCcEEEEccCcccccC
Confidence 11 1123478889999999999988865432 222 22 2236788899999999999987642
Q ss_pred -----cEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 235 -----FIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 235 -----~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
.|.++.. -|+.+..++. ...|++++|-..|-.+|.+- |+.+|
T Consensus 285 ~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiy 332 (1189)
T KOG2041|consen 285 PTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIY 332 (1189)
T ss_pred ccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEE
Confidence 3444433 3455555543 45699999998888888874 44444
No 277
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=2.6e-10 Score=101.88 Aligned_cols=222 Identities=17% Similarity=0.253 Sum_probs=147.2
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC-e
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-T 90 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~-~ 90 (293)
..+.|..|.+.-+|++|+-..+.|+.|+..|.|+++++.++.. .-...+|..+|+.+.-+.+++-+|.+++... .
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~----e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM----EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc----cccccccccccccccccCCcceeeeeccccCch
Confidence 3455778899999999999999999999999999999986422 2245689999998877766655565555544 5
Q ss_pred EEEEeCCCC-eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 91 VRLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 91 i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
..+|+.... ...+.+ ..-.++.|+..-..-+.|+......+||+.+..++...--+... .
T Consensus 1169 saLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~----------------~ 1229 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT----------------S 1229 (1516)
T ss_pred HHHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh----------------h
Confidence 678987542 111111 22235666655455566766677899999987766542211000 0
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 249 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~ 249 (293)
+-.-.+..|+|++.+++ .|| .+||.+..+.++.|-.....+. =.|+|.|..++..++ |||+++.+.++.
T Consensus 1230 ~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKLLHS 1298 (1516)
T ss_pred hhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHHHHHhc
Confidence 00113567889888776 344 4799887766655544332222 248999998888765 999999888876
Q ss_pred EecCCCcceeEECCCCCeE
Q 022716 250 IPCRAAMNSVEWNPKYNLL 268 (293)
Q Consensus 250 ~~~~~~i~~~~~sp~~~~l 268 (293)
.+.-. -..|.|+..|+.+
T Consensus 1299 VP~Ld-qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1299 VPSLD-QCAVTFNSTGDVM 1316 (1516)
T ss_pred Ccccc-ceEEEeccCccch
Confidence 65321 2467888877653
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=2.9e-08 Score=79.09 Aligned_cols=245 Identities=14% Similarity=0.211 Sum_probs=139.3
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCC-CCceeEEEeeCCc------------CCeeEEEEcC-CCCCEEEE
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-HGKVKDIELRGHA------------DSVDQLCWDP-KHADLIAT 84 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~-~~~~~~~~~~~h~------------~~i~~~~~~~-~~~~~l~s 84 (293)
....|+++.|...|.+|+||...|.|.+|.-.... +.-.-...+++|. ..|..+.|.. .+...++-
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35689999999999999999999999999654211 1000011244553 3467777743 33445556
Q ss_pred EeCCCeEEEEeCCCCeeeeee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716 85 ASGDKTVRLWDARSGKCSQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
.+.|.+|++|.+......... .+.. ++. +|-+--+.+ -..+++ ..+...-..++- ...
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~---~~~-~~~~g~~~s---~~~l~l-----------prls~hd~iiaa--~p~ 164 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSD---SFH-SPMGGPLTS---TKELLL-----------PRLSEHDEIIAA--KPC 164 (460)
T ss_pred ecCCceeeeeeeecccchhhhcccccc---ccc-cccCCCcCC---HHHhhc-----------ccccccceEEEe--ccc
Confidence 789999999998654321110 0110 111 111100000 000000 000000000100 011
Q ss_pred EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC---EEEEEeeccC-----CCeeEEEEccCC-CEEEEecCC
Q 022716 163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLE-----WPVRTISFSHTG-DYIASASED 233 (293)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~---~~~~~~~~~~-----~~v~~l~~sp~~-~~l~s~s~d 233 (293)
++....+.-.+.++.+..+...++++ .|=.|.+|++... ..+--++.|. .-|++..|+|.. ..+.-.+..
T Consensus 165 rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred eeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 12222344456788888888877765 4678999997532 1222333332 358889999974 566777888
Q ss_pred CcEEEEEcCCCC------EEEE--Ee---------cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeecC
Q 022716 234 LFIDISNVHTGR------TVHQ--IP---------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFENA 293 (293)
Q Consensus 234 ~~i~iw~~~~~~------~~~~--~~---------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~~ 293 (293)
|.|++-|++... ++.. +. .-++|..+.|+|+|.+|++-+. -++|||++.++
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---------ltvkiwDvnm~ 311 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---------LTVKIWDVNMA 311 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---------ceEEEEecccc
Confidence 999999987321 1111 11 1246778999999999998764 47999987653
No 279
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=5e-08 Score=78.67 Aligned_cols=204 Identities=15% Similarity=0.191 Sum_probs=140.5
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
-.++++++++.++...|+.|-..|++.-+.+...-..-........|...+..+.|+.. ...+++.+.|..+.---.+.
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeecc
Confidence 35789999999999999999999999988775422111112234579999999988754 56888999998865433445
Q ss_pred CeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
+..+..+.+........+.-. +..+|...+.+....+.... -+....+..+.+.++++++
T Consensus 146 ~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~------------------~~~i~~~~~h~~~~~~l~W 205 (404)
T KOG1409|consen 146 GNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNG------------------CQLITTFNGHTGEVTCLKW 205 (404)
T ss_pred CCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecC------------------CceEEEEcCcccceEEEEE
Confidence 444433333332222222211 44555555555544332211 1112334456677899999
Q ss_pred CCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 179 DPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 179 ~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
+|....+.+|..|..+.+||+--. ....++.+|...|.++++.+--+.+.+++.|+.|-+|+..-
T Consensus 206 d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 206 DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999999999999999998532 22446778999999999998899999999999999998753
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.99 E-value=6.6e-07 Score=75.36 Aligned_cols=219 Identities=16% Similarity=0.125 Sum_probs=137.9
Q ss_pred CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC--------cCCeeEE-EEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH--------ADSVDQL-CWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h--------~~~i~~~-~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
+.||++++.. .-|.|.+||.+...... ..+.++-. ..+...+ .|++.+++.++..|. |.+.+.+.-.+
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 4578887643 34789999876532211 11111110 1111111 134445667766654 45555554333
Q ss_pred eeeeeeeecCceEEEEEcCCCCEEEEEeCCC-eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 100 KCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
-.++ ....+.+.-..+.-+++.++.|..|| .+-++|.++.+..+ +...-+.+.++.+
T Consensus 352 ~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr---------------------~e~~lg~I~av~v 409 (668)
T COG4946 352 YSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR---------------------IEKDLGNIEAVKV 409 (668)
T ss_pred eeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE---------------------eeCCccceEEEEE
Confidence 2222 22334455556666777899999998 89999987754222 1122345668899
Q ss_pred CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCc----EEEEEcCCCCEEEEEecCC
Q 022716 179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF----IDISNVHTGRTVHQIPCRA 254 (293)
Q Consensus 179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~----i~iw~~~~~~~~~~~~~~~ 254 (293)
+|+|+.++++.....|.+.|+.++.....-+....-|+...|||+++++|-+-.+|. |+++|...++.........
T Consensus 410 s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta 489 (668)
T COG4946 410 SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA 489 (668)
T ss_pred cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc
Confidence 999999999999999999999998754333334457999999999999999987764 7899998877654433222
Q ss_pred CcceeEECCCCCeEEEEE
Q 022716 255 AMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 255 ~i~~~~~sp~~~~la~~~ 272 (293)
---+=+|.|++++|-.=+
T Consensus 490 ~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cccCcccCCCCcEEEEEe
Confidence 334567888988755444
No 281
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.98 E-value=1.4e-09 Score=61.03 Aligned_cols=37 Identities=46% Similarity=0.832 Sum_probs=34.9
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEee
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~ 48 (293)
+.+.+.+|.+.|.+++|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4577899999999999999999999999999999997
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=1.7e-08 Score=82.83 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=104.0
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
.+..+..++.++.+|.+..+....++++..+... ......+..-...+..+..... ..+...++....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~s-v~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTS-VLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccce-EEEEeecCCceeeeeeccccc
Confidence 3445566788888998888888878887654321 1111122222223444433221 122333455566777776656
Q ss_pred eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716 100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID 179 (293)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
.+...+.+-.....++++||++.++++..|..|++-.......+....+ .|..-+..+++.
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-------------------GH~eFVS~isl~ 203 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-------------------GHKEFVSTISLT 203 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-------------------ccHhheeeeeec
Confidence 6555555555667899999999999999999999876554332222221 223334455554
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 180 PMGRYFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
+ +..|++|+.|++|++||++++.++.++
T Consensus 204 ~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 204 D-NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred c-CceeeecCCCCcEEEEecccCCccccc
Confidence 4 555899999999999999999887655
No 283
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=5.3e-06 Score=67.71 Aligned_cols=228 Identities=15% Similarity=0.210 Sum_probs=139.4
Q ss_pred cEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCcCC----------eeEEEEcCCCCCEEEEE-eCCC
Q 022716 22 KVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADS----------VDQLCWDPKHADLIATA-SGDK 89 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~~~----------i~~~~~~~~~~~~l~s~-~~d~ 89 (293)
+-..++++++|++++++.. -|.|.++-+...+.... ......|.+. +....+.|++. +|++. -.--
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~-~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~D 167 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP-VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTD 167 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc-ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCc
Confidence 3478899999999998877 58999998865432111 1122234333 77778889754 54444 3345
Q ss_pred eEEEEeCCCCeeeeee----eecCceEEEEEcCCCCEEEEEeC-CCeEEEEEcccc-ceeeeecccceeeeeEEecCCCE
Q 022716 90 TVRLWDARSGKCSQQA----ELSGENINITYKPDGTHIAVGNR-DDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
.|.+|++..+...... .-...+..++|+|++++..+..+ +++|.+|..... ...... +.+.--|..
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l------Q~i~tlP~d-- 239 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL------QTIDTLPED-- 239 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEe------eeeccCccc--
Confidence 7889999877654322 22345678999999998877765 899999998764 111111 101000100
Q ss_pred EEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCCCC-EEEEEe---eccCCCeeEEEEccCCCEEEEecCCC-cEE
Q 022716 164 FFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEM-LCVRTF---TKLEWPVRTISFSHTGDYIASASEDL-FID 237 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~-~~~~~~---~~~~~~v~~l~~sp~~~~l~s~s~d~-~i~ 237 (293)
-.+....-.|.++|+|++|-++.. ...|.+|.+... ..+... ..+....+...|+|.|++|+.+.+|. .|.
T Consensus 240 ---F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~ 316 (346)
T COG2706 240 ---FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNIT 316 (346)
T ss_pred ---cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEE
Confidence 012334567889999999887754 457888876532 222222 22334478899999999999988664 377
Q ss_pred EEEcC--CCCEEEE--EecCCCcceeEEC
Q 022716 238 ISNVH--TGRTVHQ--IPCRAAMNSVEWN 262 (293)
Q Consensus 238 iw~~~--~~~~~~~--~~~~~~i~~~~~s 262 (293)
++... +|++-.. ........||.|.
T Consensus 317 vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 317 VFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 77554 4553221 1122234566664
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.95 E-value=6.2e-07 Score=70.96 Aligned_cols=201 Identities=14% Similarity=0.148 Sum_probs=107.5
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee-EEEeeC-CcCCeeEEEEcCCC-----CCEEEEEeCCCeEEEE
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRG-HADSVDQLCWDPKH-----ADLIATASGDKTVRLW 94 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~-h~~~i~~~~~~~~~-----~~~l~s~~~d~~i~vw 94 (293)
.=..++||||+..||.+.+.|+|+++|+.....-.+. ...+.+ -...|..+.|.+-. ...|+....+|.++-|
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4568999999999999999999999998631100000 000111 12345555553211 2245556778887766
Q ss_pred eCCC-----Ceeeeeeee----cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 95 DARS-----GKCSQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 95 d~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
-+-. .+....+.+ ...+.++.++|..+.|++|+....= + ........+. .+|-
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~------~-~~s~a~~~GL----taWR------- 186 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ------D-GMSKASSCGL----TAWR------- 186 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC------C-ccccccccCc----eEEE-------
Confidence 6422 122233333 2345678899998888888754320 0 0000000010 1110
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCC------cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEE
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADS------LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS 239 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~------~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw 239 (293)
+..+ .|.... ++...|+ +-.+|.+-+.............|..+..||||+.||+...+|.|.+|
T Consensus 187 iL~~---------~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 187 ILSD---------SPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred EcCC---------CCcEEE-ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence 0000 111111 1111111 12334333222111112345679999999999999999999999999
Q ss_pred EcCCCCEEEEE
Q 022716 240 NVHTGRTVHQI 250 (293)
Q Consensus 240 ~~~~~~~~~~~ 250 (293)
++..-+..+..
T Consensus 257 ~iPsL~~~~~W 267 (282)
T PF15492_consen 257 EIPSLRLQRSW 267 (282)
T ss_pred ecCcchhhccc
Confidence 99876655544
No 285
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.90 E-value=6.9e-09 Score=58.12 Aligned_cols=38 Identities=34% Similarity=0.560 Sum_probs=36.1
Q ss_pred EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 203 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 203 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
+++.++.+|..+|.+|+|+|++++|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.85 E-value=6.2e-06 Score=70.14 Aligned_cols=198 Identities=15% Similarity=0.261 Sum_probs=122.8
Q ss_pred CeeEEEEcCCC-CCEEEE-----EeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEe-----------CC
Q 022716 68 SVDQLCWDPKH-ADLIAT-----ASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGN-----------RD 129 (293)
Q Consensus 68 ~i~~~~~~~~~-~~~l~s-----~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-----------~d 129 (293)
.|....++|.+ +..|+. .+.+.++++|.+..+..+..-. +......+.|.+.|+++++-- ..
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence 45666777762 222221 2446778888876554433322 233445677888888765421 23
Q ss_pred CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC--------------------EEEEEECCCCCEEEEec
Q 022716 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG--------------------CYCIAIDPMGRYFAVGS 189 (293)
Q Consensus 130 ~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~l~~gs 189 (293)
.++.|++++.....-.......|.++.|.|.+..+.+..+-.+ -.-+.|+|.+++++.++
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEec
Confidence 5677888774332222234567889999998887766653211 12356889999988865
Q ss_pred CC---CcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCCCEEEEec------CCCcEEEEEcCCCCEEEEEecCCCccee
Q 022716 190 AD---SLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASAS------EDLFIDISNVHTGRTVHQIPCRAAMNSV 259 (293)
Q Consensus 190 ~d---~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s------~d~~i~iw~~~~~~~~~~~~~~~~i~~~ 259 (293)
-| |.+.+||..... ++..+.+. .-..+.|+|+++++.+.- .|..|+||++.... +. ....+
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~-~f------el~~~ 405 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK-VF------ELTNI 405 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCch-hh------hhhhc
Confidence 54 679999986543 33344332 345577999999987763 37889999985432 11 46678
Q ss_pred EECCCCCeEEEEEcC
Q 022716 260 EWNPKYNLLAYAGDD 274 (293)
Q Consensus 260 ~~sp~~~~la~~~~d 274 (293)
.|.|.+++.-+.+.+
T Consensus 406 ~W~p~~~~~ttsSs~ 420 (561)
T COG5354 406 TWDPSGQYVTTSSSC 420 (561)
T ss_pred cccCCcccceeeccC
Confidence 888888776555544
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.81 E-value=3.9e-06 Score=79.61 Aligned_cols=228 Identities=16% Similarity=0.215 Sum_probs=142.1
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDAR- 97 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~- 97 (293)
.+.|.++.|-++...++.+..+|.|.+...+....... ++.. .-...|.+++|+|+. ++|+-+..++++.+..-.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccc
Confidence 46899999999999999999999999983322111111 1222 235679999999985 677777778887765311
Q ss_pred --------------CCeeee------eee---------------------------ecCceEEEEEcCCCCEEEEEeC--
Q 022716 98 --------------SGKCSQ------QAE---------------------------LSGENINITYKPDGTHIAVGNR-- 128 (293)
Q Consensus 98 --------------~~~~~~------~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~-- 128 (293)
..+.+. ..+ .......++|-.||+++++.+-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 000000 000 1112345778889999888774
Q ss_pred -C---CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC---CCcEEEEeCCC
Q 022716 129 -D---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISE 201 (293)
Q Consensus 129 -d---~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---d~~i~iwd~~~ 201 (293)
+ ..+++|+-+ +....... + -++--.+++|-|.|+++|+... .-.|.+|. ++
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE---~-----------------v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rN 289 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSE---P-----------------VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RN 289 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccc---c-----------------CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cC
Confidence 2 357777743 11111000 0 0111236788888888888764 23455555 56
Q ss_pred CEEEEEeec----cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE--EEEE--ecCCCcceeEECCCC-CeEEEEE
Q 022716 202 MLCVRTFTK----LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT--VHQI--PCRAAMNSVEWNPKY-NLLAYAG 272 (293)
Q Consensus 202 ~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~--~~~~--~~~~~i~~~~~sp~~-~~la~~~ 272 (293)
|.+...|.- ....|..++|++|+..||..-.|. |.+|.....+- ...+ .....+..+.|+|.. ..|....
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 655555542 345799999999999999977666 99999888753 2223 334456679999965 4455555
Q ss_pred c
Q 022716 273 D 273 (293)
Q Consensus 273 ~ 273 (293)
.
T Consensus 369 ~ 369 (928)
T PF04762_consen 369 S 369 (928)
T ss_pred c
Confidence 4
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=3.9e-05 Score=62.10 Aligned_cols=216 Identities=15% Similarity=0.170 Sum_probs=131.4
Q ss_pred EEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeee
Q 022716 25 SVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (293)
Q Consensus 25 ~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 103 (293)
++.|.+ ++.++++--..+.|..|+.... ......+.+ ...+.+...++. |+.+...+. .++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~~----~~G~~~~~~~g~-l~v~~~~~~-~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLPG----PNGMAFDRPDGR-LYVADSGGI-AVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESSS----EEEEEEECTTSE-EEEEETTCE-EEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecCC----CceEEEEccCCE-EEEEEcCce-EEEecCCCcEEE
Confidence 577887 6666677767899999988642 222222222 455566633344 444555444 555998886655
Q ss_pred eeeec------CceEEEEEcCCCCEEEEEeCC--------CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 104 QAELS------GENINITYKPDGTHIAVGNRD--------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 104 ~~~~~------~~~~~~~~~~~~~~l~~~~~d--------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
..... ..+..+++.|+|+..++.... +.+..++.. .+ ...+...
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---------------------~~~~~~~ 132 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---------------------VTVVADG 132 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---------------------EEEEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---------------------EEEEecC
Confidence 44431 123468899999877666533 335555544 11 1111112
Q ss_pred CCCEEEEEECCCCCEE-EEecCCCcEEEEeCC--CC--EEEEEeec---cCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 170 NAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS--EM--LCVRTFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~--~~--~~~~~~~~---~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
-....-|+++|+++.| ++-+..+.|..+++. .. ...+.+.. .......+++.++|+..++.-..+.|.+++.
T Consensus 133 ~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 133 LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 2234568889999865 466778889999875 22 11122222 2223788999999998888888899999998
Q ss_pred CCCCEEEEEecC-CCcceeEE-CCCCCeEEEEE
Q 022716 242 HTGRTVHQIPCR-AAMNSVEW-NPKYNLLAYAG 272 (293)
Q Consensus 242 ~~~~~~~~~~~~-~~i~~~~~-sp~~~~la~~~ 272 (293)
. |+.+..+... ..+++++| .|+.+.|..++
T Consensus 213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 213 D-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp T-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred C-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 7 8888776554 57889999 46766555443
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=5.2e-08 Score=83.33 Aligned_cols=170 Identities=19% Similarity=0.279 Sum_probs=114.2
Q ss_pred EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-------eeeeeeeec-CceEEEEEcCCCCEEEEEeCCCe
Q 022716 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAELS-GENINITYKPDGTHIAVGNRDDE 131 (293)
Q Consensus 60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~ 131 (293)
..+.||...|..+.-. ++.+-+++++.|++|++|.++.. .|..+++.+ .++..+.|-.+-++++++ |+.
T Consensus 729 ~nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 4567898888877543 34566889999999999998643 244444433 344467777776666654 899
Q ss_pred EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCCCEEEEEeec
Q 022716 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTK 210 (293)
Q Consensus 132 i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~~~~~ 210 (293)
+++||.=...++.. +.|.|... ....+.|+- +-+..+++.| +.+.+|+++|.+.++...+++-
T Consensus 806 iHlWDPFigr~Laq---------~~dapk~~------a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQ---------MEDAPKEG------AGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred ceeecccccchhHh---------hhcCcccC------CCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEe
Confidence 99999644333321 22322210 011122221 1123344444 7899999999998876666653
Q ss_pred c-----CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716 211 L-----EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 248 (293)
Q Consensus 211 ~-----~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~ 248 (293)
. ..-+++++..|.|+++|.+-..|.|.+-|.++|+.+.
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence 3 3458899999999999999999999999999998764
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=1.1e-07 Score=84.01 Aligned_cols=240 Identities=19% Similarity=0.313 Sum_probs=149.1
Q ss_pred cEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 22 KVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 22 ~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
.|-..+|+|... ++++.+ ...-.+|++.... .......+.+|...|+.+.|+|+..+.+++++-|..+..||+++
T Consensus 69 ~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss-~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS 146 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSS-SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS 146 (1081)
T ss_pred hhcceecccCCCCceeEEecC-cchhhhhhhhcCC-ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC
Confidence 466778887642 455444 4555689887533 33445668899999999999999999999999999999999988
Q ss_pred Ceeee-e-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 99 GKCSQ-Q-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 99 ~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
..... . ...+.....+.|+.....+.+.+..+.+.+||++.+. ++...+- +-..+..
T Consensus 147 p~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~--------------------~vs~vn~ 206 (1081)
T KOG0309|consen 147 PHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG--------------------HVSSVNS 206 (1081)
T ss_pred CCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc--------------------cceeeeh
Confidence 65322 2 2245556678887655566677778899999998653 2222211 1122233
Q ss_pred EEECC-CCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCCEEEEe--cCCCcE---------EEEEcC
Q 022716 176 IAIDP-MGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGDYIASA--SEDLFI---------DISNVH 242 (293)
Q Consensus 176 ~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~--s~d~~i---------~iw~~~ 242 (293)
++|.. ....+.+.+.|++|+.||..+....-. ......+|.--+|-|-|.-..+- -.+..+ ..|+..
T Consensus 207 ~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~ 286 (1081)
T KOG0309|consen 207 IDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVF 286 (1081)
T ss_pred HHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccc
Confidence 44432 234678899999999999876532211 12234566666666655422221 112233 445555
Q ss_pred CC-CEEEEEec-CCCcceeEECCCCC----------eEEEEEcCCCCCCCCcceEEEEeee
Q 022716 243 TG-RTVHQIPC-RAAMNSVEWNPKYN----------LLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 243 ~~-~~~~~~~~-~~~i~~~~~sp~~~----------~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
++ +.++.+.. ...|...-|...+. +|++-+.|. .+|+|-+.
T Consensus 287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~--------~lrlWpI~ 339 (1081)
T KOG0309|consen 287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ--------TLRLWPID 339 (1081)
T ss_pred cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC--------ceEeeecc
Confidence 44 45666643 33455555544333 688888774 56677654
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.78 E-value=9.9e-06 Score=68.50 Aligned_cols=219 Identities=12% Similarity=0.111 Sum_probs=140.6
Q ss_pred CccccEEEEEECCCCCeEEEEeCCC-cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQ-TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg-~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
+|...|.-..+..+++-++.|..|| .+-|+|.+.. .. ......-+.|.++..+|++ ..++.+.....+-+.|+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~--kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vidi 430 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EV--KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDI 430 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eE--EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEe
Confidence 7888899999999999999999999 8999998742 21 2334556779999999874 56777777888899999
Q ss_pred CCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCC----eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 97 RSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDD----ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~----~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
.++.....-+ -.+.++..+|+|++++++-+--+| .|+++|+.+.+.........--.+-+|+|+++.+...+..+
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 9987544322 245567899999999999876555 68999998755433221111111223444444333222110
Q ss_pred ------C------------------------------------------------EEEEEECCCCCEEEEecCCCcEEEE
Q 022716 172 ------G------------------------------------------------CYCIAIDPMGRYFAVGSADSLVSLW 197 (293)
Q Consensus 172 ------~------------------------------------------------~~~~~~~~~~~~l~~gs~d~~i~iw 197 (293)
. +.=+-+.+....-+++-.+|.|.++
T Consensus 511 LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killf 590 (668)
T COG4946 511 LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLF 590 (668)
T ss_pred cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEE
Confidence 0 0000111222334556666667776
Q ss_pred eCC--------------CCEEE-E-----EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 198 DIS--------------EMLCV-R-----TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 198 d~~--------------~~~~~-~-----~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
... .+... . ........+.++..|+|+..+.. -.|+.+++++++.
T Consensus 591 s~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 591 SYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EeeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 542 11110 0 11223456889999999999887 8999999999875
No 292
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.77 E-value=1.4e-05 Score=69.09 Aligned_cols=193 Identities=13% Similarity=0.157 Sum_probs=110.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEE------EEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce--
Q 022716 80 DLIATASGDKTVRLWDARSGKCSQQAELSGENIN------ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-- 151 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~-- 151 (293)
+.++.+..++.+..+|.++++.+........... .... +..++.+..++.+..+|+++.+..-.......
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g 223 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG 223 (377)
T ss_pred CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCC
Confidence 4566677899999999999887655444332211 1111 24677888889999999877654433221100
Q ss_pred ---ee---eeEEec--CCCEEEEecCCCCEEEEE-----------------ECCCCCEEEEecCCCcEEEEeCCCCEEEE
Q 022716 152 ---VN---EIAWNM--TGEMFFLTTGNAGCYCIA-----------------IDPMGRYFAVGSADSLVSLWDISEMLCVR 206 (293)
Q Consensus 152 ---~~---~v~~~~--~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~gs~d~~i~iwd~~~~~~~~ 206 (293)
+. .+.-.| .+..+++....+.+.++. ....+..+.+++.+|.+..+|..+++.+-
T Consensus 224 ~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W 303 (377)
T TIGR03300 224 RTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELW 303 (377)
T ss_pred CCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEE
Confidence 00 000000 112222222222222211 11235677788899999999999887664
Q ss_pred EeeccCCC-eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC-Ccce-eEECCCCCeEEEEEcCCCCC
Q 022716 207 TFTKLEWP-VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNS-VEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 207 ~~~~~~~~-v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-~i~~-~~~sp~~~~la~~~~d~~~~ 278 (293)
........ ..+... .+..|++++.+|.++++|..+|+.+..++... ++.. -... ++.|..++.|++++
T Consensus 304 ~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~--~~~l~v~~~dG~l~ 374 (377)
T TIGR03300 304 KNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV--GDGLLVQTRDGDLY 374 (377)
T ss_pred ccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE--CCEEEEEeCCceEE
Confidence 44222221 111111 46789999999999999999999988776443 2222 2222 24577777776554
No 293
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.77 E-value=1.3e-05 Score=69.30 Aligned_cols=235 Identities=13% Similarity=0.056 Sum_probs=132.6
Q ss_pred CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc
Q 022716 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110 (293)
Q Consensus 31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 110 (293)
.+..++.++.+|.+..+|..+.. ......+.+. ....... . ...++.++.++.+..+|..+|+.+......+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~~~--~~~~p~v--~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 136 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGK--RLWRVDLDER--LSGGVGA--D-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE 136 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCc--EeeeecCCCC--cccceEE--c-CCEEEEEcCCCEEEEEECCCCcEeeeeccCce
Confidence 36688889999999999876431 2222223221 1112222 2 34677788899999999999987665554443
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee-------eeEEecCCCEEEEecCCCCEEEEE------
Q 022716 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-------EIAWNMTGEMFFLTTGNAGCYCIA------ 177 (293)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~------ 177 (293)
..+.... .+..++.++.++.+..+|.++.+.+-+........ .+.. +..+++......+.++.
T Consensus 137 ~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 137 VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEECCCCEEEEEEccCCCE
Confidence 3221111 24567778889999999998766543322211100 0000 01111111111111110
Q ss_pred ----------------------ECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC
Q 022716 178 ----------------------IDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 233 (293)
Q Consensus 178 ----------------------~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d 233 (293)
-+| .+..+.+++.+|.+..+|.++++.+-.... . .... ....+..++.++.|
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~--p~~~~~~vyv~~~~ 288 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQG--PAVDDNRLYVTDAD 288 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccC--ceEeCCEEEEECCC
Confidence 011 245677778899999999998876544431 1 1111 12356788888899
Q ss_pred CcEEEEEcCCCCEEEEE-ecCCC-cceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 234 LFIDISNVHTGRTVHQI-PCRAA-MNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 234 ~~i~iw~~~~~~~~~~~-~~~~~-i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
+.+..+|..+|+.+-.. ..... ..+... .++.+.+++.++.++.++.
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 99999999999876544 22111 111111 3567788888877776554
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.3e-06 Score=70.64 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=67.4
Q ss_pred eeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
+.+.+|...|.+++|||..+ .|..++.+++|+|.|+++... ...+..| ..+++.+|..+..++++.|-.+|.|.
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEeccccee----eeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 45667889999999999988 678999999999999986431 2233445 67999999988888999999999999
Q ss_pred EEeCCCCe
Q 022716 93 LWDARSGK 100 (293)
Q Consensus 93 vwd~~~~~ 100 (293)
+||++..+
T Consensus 262 vyD~R~~~ 269 (463)
T KOG1645|consen 262 VYDMRQPE 269 (463)
T ss_pred EEEccCCC
Confidence 99998654
No 295
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=1.8e-06 Score=74.05 Aligned_cols=139 Identities=22% Similarity=0.368 Sum_probs=98.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-
Q 022716 112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA- 190 (293)
Q Consensus 112 ~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~- 190 (293)
+-+.|+|.|.+|++-...| |.+|--.++...++..++ .+.-+.|+|+.+||++=+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp----------------------~Vq~idfSP~EkYLVT~s~~ 270 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP----------------------GVQFIDFSPNEKYLVTYSPE 270 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC----------------------CceeeecCCccceEEEecCC
Confidence 3589999999999987654 788877666655554332 2344566676666666442
Q ss_pred ---------C-CcEEEEeCCCCEEEEEeeccCC--C-eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCc
Q 022716 191 ---------D-SLVSLWDISEMLCVRTFTKLEW--P-VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAM 256 (293)
Q Consensus 191 ---------d-~~i~iwd~~~~~~~~~~~~~~~--~-v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i 256 (293)
+ ..+.|||+++|...+.|..... . ..-..||.|++|+|.... ..|.|++..+..++..... -..|
T Consensus 271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gI 349 (698)
T KOG2314|consen 271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGI 349 (698)
T ss_pred ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccc
Confidence 2 4699999999988887765332 2 234689999999998877 5688888766444332222 2468
Q ss_pred ceeEECCCCCeEEEEEcC
Q 022716 257 NSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 257 ~~~~~sp~~~~la~~~~d 274 (293)
...+|+|.++.||+-.-.
T Consensus 350 r~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred cCcccCCCcceEEEEccc
Confidence 999999999999998754
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=4.6e-06 Score=74.37 Aligned_cols=224 Identities=18% Similarity=0.190 Sum_probs=144.3
Q ss_pred ceeecCccccEEEEEECCC------------CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC--C
Q 022716 13 SREYTGHKKKVHSVAWNCT------------GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--H 78 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~------------~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~ 78 (293)
++.+.-|++.|+.+.|.|. .-.||++.-.|.|.+||+.. ......+..|.+++..++|-+. .
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~----~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL----ASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh----hhhhhhhcCCCcchhheeeeeccCc
Confidence 4556778999999999873 12567788889999999863 2233456678889999998663 2
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceE-EEEEcC-CCCEEEEEeCCCeEEEEEccccc----eeeeecccce
Q 022716 79 -ADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKP-DGTHIAVGNRDDELTILDVRKFK----PIHRRKFGYE 151 (293)
Q Consensus 79 -~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~----~~~~~~~~~~ 151 (293)
.++|+....-..+.+|+..+|+..........+. ++.+.| |.+.+..-+..|.+.+.+.-... +.++.....+
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence 3677777888999999999998665544444444 477777 56677777777777666542211 1111111110
Q ss_pred eeeeEEecCCCEEEEec-----CCCC------EEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716 152 VNEIAWNMTGEMFFLTT-----GNAG------CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF 220 (293)
Q Consensus 152 ~~~v~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 220 (293)
..+.+ ..++...+. .... +-..+|+|.-+.++-..-...+.++|++-..++.......+.+.=+.+
T Consensus 204 ~Sdl~---~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~v 280 (1062)
T KOG1912|consen 204 HSDLA---HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDV 280 (1062)
T ss_pred ccchh---hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEe
Confidence 00000 000000000 0000 123577887666666666778999999877777777666666666777
Q ss_pred ccCC--CEEEEecCCCcEEEEEcCC
Q 022716 221 SHTG--DYIASASEDLFIDISNVHT 243 (293)
Q Consensus 221 sp~~--~~l~s~s~d~~i~iw~~~~ 243 (293)
-|++ ..|.+...||.+.||-.+.
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEeec
Confidence 7776 4789999999999997654
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.55 E-value=2.8e-05 Score=72.73 Aligned_cols=217 Identities=16% Similarity=0.256 Sum_probs=135.8
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee
Q 022716 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR 146 (293)
Q Consensus 67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~ 146 (293)
+.|.++.|..+. ..++-+..+|.|.+-|..+....-.-.....+.+++|+||+..++..+.+.++.+.+ .++.++...
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 568888887664 445567788888888877765544445667788999999999999998888776643 333333332
Q ss_pred ccc------ceeeeeEEecCCCEEEEec-------------------CCCCEEEEEECCCCCEEEE-----ecCCCcEEE
Q 022716 147 KFG------YEVNEIAWNMTGEMFFLTT-------------------GNAGCYCIAIDPMGRYFAV-----GSADSLVSL 196 (293)
Q Consensus 147 ~~~------~~~~~v~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~~-----gs~d~~i~i 196 (293)
... ...-.+.|......+.-.. -+++-++|.|--||.++|+ ....+.|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 221 1122234433222222111 1223457899999999988 444589999
Q ss_pred EeCCCCEEEEEee-ccCCCeeEEEEccCCCEEEEe---cCCCcEEEEEcCCC---CEEEEEecCC-CcceeEECCCCCeE
Q 022716 197 WDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASA---SEDLFIDISNVHTG---RTVHQIPCRA-AMNSVEWNPKYNLL 268 (293)
Q Consensus 197 wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~---s~d~~i~iw~~~~~---~~~~~~~~~~-~i~~~~~sp~~~~l 268 (293)
||.+ +. +.... ....--.+++|=|.|..+|+- ..|..|.++--+.- .-....+... ++..++|+.++..|
T Consensus 227 ~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-ch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 9976 32 22222 223445678999999998875 34556777765432 1122233333 38999999999999
Q ss_pred EEEEcCCCCCCCCcceEEEEeeec
Q 022716 269 AYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 269 a~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
|.--.++ .+..+++|-+-|
T Consensus 305 Av~~~~~-----e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 305 AVVTSNL-----ENSLVQLWTTGN 323 (1265)
T ss_pred eeeeccc-----ccceEEEEEecC
Confidence 9844432 123477776554
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=4.2e-07 Score=70.82 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=89.7
Q ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-----CCC
Q 022716 118 PDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-----ADS 192 (293)
Q Consensus 118 ~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-----~d~ 192 (293)
-.++.++++..|+.+.+++.++........ ++.. .+.. +..+-..++.+.++. +-+
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i---~~~~-------------~~~a---s~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALMSRI---PSIH-------------SGSA---SRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhhhhc---cccc-------------cccc---ccceeecccEEecCCcceEeecc
Confidence 345678999999999999987632221110 0000 0000 011111233333221 123
Q ss_pred cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEE--EecCCCcceeEECCCC-CeE
Q 022716 193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKY-NLL 268 (293)
Q Consensus 193 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~--~~~~~~i~~~~~sp~~-~~l 268 (293)
..++|++++...+..-+.....|.+++-+|..+ .+++|++||.+.+||.+....+-. ..++.+|+.+.|||+. ..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 455666655432222122234599999999765 567788999999999987643322 2356789999999965 789
Q ss_pred EEEEcCCCCCCCCcc
Q 022716 269 AYAGDDKNKYQADEG 283 (293)
Q Consensus 269 a~~~~d~~~~~~~~~ 283 (293)
.+++.|+.+|-|+..
T Consensus 240 ft~sedGslw~wdas 254 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAS 254 (319)
T ss_pred eEecCCCcEEEEcCC
Confidence 999999999999886
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=7.2e-05 Score=67.73 Aligned_cols=245 Identities=12% Similarity=0.159 Sum_probs=143.2
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC-eeEEEEcCCCCCEEEEEeCCCe-----EEEEe
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPKHADLIATASGDKT-----VRLWD 95 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~~l~s~~~d~~-----i~vwd 95 (293)
.|+|+ ++.+..+|.|+.||.|-+.+-. ......+.++... |..+ +.-.+..+|+|.++|+. +++||
T Consensus 27 ~isc~--~s~~~~vvigt~~G~V~~Ln~s-----~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 27 AISCC--SSSTGSVVIGTADGRVVILNSS-----FQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred ceeEE--cCCCceEEEeeccccEEEeccc-----ceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEec
Confidence 56665 6888899999999999887532 1111235556555 4443 34445578889888765 89999
Q ss_pred CCCC------eee---eeeee-----cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716 96 ARSG------KCS---QQAEL-----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 96 ~~~~------~~~---~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (293)
+... .|. ..+.. ..+..+++.+.+-+.+++|-.+|.|.++.-. ..+.+..
T Consensus 99 lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs------------- 162 (933)
T KOG2114|consen 99 LEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS------------- 162 (933)
T ss_pred ccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc-------------
Confidence 7432 233 11221 1223457788888899999999999887421 1111100
Q ss_pred CEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 162 EMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
+......+..+++.+++..++..++-...-..|.+|.+.... ....+..|..++++.+|++....+++++ +..+++|+
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYD 241 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEc
Confidence 011122345678888888777763333334568999987443 2344667778899999987655444433 45688998
Q ss_pred cCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCC-----CCCcceEEEEeeec
Q 022716 241 VHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKY-----QADEGVFRIYGFEN 292 (293)
Q Consensus 241 ~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~-----~~~~~~~~~~~~~~ 292 (293)
....+.-..+.. +.-.-+-|...|-+|++.-+.+... .-....+++|+++|
T Consensus 242 sd~~~~cfaf~~-g~kk~~~~~~~g~~L~v~~~~~~~~~s~s~ss~~~i~~~~d~~n 297 (933)
T KOG2114|consen 242 SDGRGPCFAFEV-GEKKEMLVFSFGLLLCVTTDKGTENTSLSNSSSNRIFKAYDLRN 297 (933)
T ss_pred CCCcceeeeecC-CCeEEEEEEecCEEEEEEccCCCCCcccCccchhheeehhhhcC
Confidence 864333333331 2222344545566666655443332 12234556666655
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=5.9e-07 Score=70.03 Aligned_cols=75 Identities=19% Similarity=0.323 Sum_probs=61.1
Q ss_pred ccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 21 KKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 21 ~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
..|++++-.|.. +.+++|+.||.+-+||......+ ...+..|+++|+.+.|+|.+++.|+++++||.+-.||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 348999988865 45678889999999998753211 1236789999999999999999999999999999999754
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.50 E-value=0.00015 Score=58.28 Aligned_cols=216 Identities=18% Similarity=0.138 Sum_probs=123.3
Q ss_pred CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC
Q 022716 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120 (293)
Q Consensus 41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (293)
+|+|..||.... .......+..-......... +. ...++.++.++.+..||..+|+.+......+...... ..++
T Consensus 2 ~g~l~~~d~~tG--~~~W~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTG--KELWSYDLGPGIGGPVATAV-PD-GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDG 76 (238)
T ss_dssp TSEEEEEETTTT--EEEEEEECSSSCSSEEETEE-EE-TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEET
T ss_pred CCEEEEEECCCC--CEEEEEECCCCCCCccceEE-Ee-CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecc
Confidence 577788887532 22333333110111221111 12 3467777899999999999998877666544322211 2235
Q ss_pred CEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716 121 THIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI 199 (293)
Q Consensus 121 ~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~ 199 (293)
..+++++.++.+..+|+++.+..... ....+. ............+..++.+..++.|..+|+
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP-----------------AGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT-----------------CSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred cccccccceeeeEecccCCcceeeeeccccccc-----------------cccccccCceEecCEEEEEeccCcEEEEec
Confidence 56777778889999998887765431 111000 000011111123777888888999999999
Q ss_pred CCCEEEEEeeccCCC----------eeEEEEccCCCEEEEecCCCc-EEEEEcCCCCEEEEEecCCCcceeEECCCCCeE
Q 022716 200 SEMLCVRTFTKLEWP----------VRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 268 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~----------v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 268 (293)
+++..+-.......+ +..-....++ .+..++.++. +.+ |..+++.+-... ...+..+ ..+.+..+
T Consensus 140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l 215 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTL 215 (238)
T ss_dssp TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEE
T ss_pred CCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEE
Confidence 999887666543322 1122222345 6666676774 666 999998664333 2222221 34677777
Q ss_pred EEEEcCCCCCCCCc
Q 022716 269 AYAGDDKNKYQADE 282 (293)
Q Consensus 269 a~~~~d~~~~~~~~ 282 (293)
..++.++.++.+|-
T Consensus 216 ~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 216 YVTSSDGRLYALDL 229 (238)
T ss_dssp EEEETTTEEEEEET
T ss_pred EEEeCCCEEEEEEC
Confidence 77777766665554
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.50 E-value=0.00036 Score=57.09 Aligned_cols=235 Identities=19% Similarity=0.203 Sum_probs=119.1
Q ss_pred cEEEEEECCC-CCeEEEEeCCCc-EEEeecCCCCCCcee----EEEeeCCcCCeeEEEEcCCCCCEEEEEeC-----CCe
Q 022716 22 KVHSVAWNCT-GTKLASGSVDQT-ARVWHIEPHGHGKVK----DIELRGHADSVDQLCWDPKHADLIATASG-----DKT 90 (293)
Q Consensus 22 ~v~~l~~s~~-~~~l~s~~~dg~-v~iw~~~~~~~~~~~----~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-----d~~ 90 (293)
..+.++.+|. +..++.+-.-|+ ..+||.......... ...+.||- .|++++ .+|++.-+ .|.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg------~fs~dG-~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG------VFSPDG-RLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE------EEcCCC-CEEEEeccccCCCcEE
Confidence 4567778884 445566666554 446777543211100 01233442 678875 56666533 578
Q ss_pred EEEEeCC-CCeeeeeeeecC-ceEEEEEcCCCCEEEEEeC-------CC-----------eEEEEEccccceeeeecc--
Q 022716 91 VRLWDAR-SGKCSQQAELSG-ENINITYKPDGTHIAVGNR-------DD-----------ELTILDVRKFKPIHRRKF-- 148 (293)
Q Consensus 91 i~vwd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-------d~-----------~i~l~d~~~~~~~~~~~~-- 148 (293)
|-|||.. ..+.+..+...+ .+-.+.+.|||+.|+++-. .| .+.+.|.++...+.+..+
T Consensus 79 IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 9999998 334444443332 2346888999988777531 11 233334444443333222
Q ss_pred ---cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC
Q 022716 149 ---GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD 225 (293)
Q Consensus 149 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 225 (293)
...++.+.++.++...+....+.... ..-..++.-..++.+...+.... ........+-+|++++++.
T Consensus 159 ~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~-----~~~PLva~~~~g~~~~~~~~p~~----~~~~l~~Y~gSIa~~~~g~ 229 (305)
T PF07433_consen 159 DLHQLSIRHLAVDGDGTVAFAMQYQGDPG-----DAPPLVALHRRGGALRLLPAPEE----QWRRLNGYIGSIAADRDGR 229 (305)
T ss_pred cccccceeeEEecCCCcEEEEEecCCCCC-----ccCCeEEEEcCCCcceeccCChH----HHHhhCCceEEEEEeCCCC
Confidence 11234444443332222111110000 00112222222222333222111 1123456789999999998
Q ss_pred EEEEec-CCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716 226 YIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 226 ~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
+++..| .-+.+.+||..+++.+....... +..++-.+++ ++++.|..
T Consensus 230 ~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 230 LIAVTSPRGGRVAVWDAATGRLLGSVPLPD-ACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEEEECCCCCEEEEEECCCCCEeeccccCc-eeeeeecCCc-eEEeCCCc
Confidence 875555 77889999999999887654322 3345555544 56665543
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=4.8e-07 Score=73.22 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=99.4
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
+-++.|-+++|.-.++.+..|...|.|-..|+.....+.......--|...|+++.........|++.+-+|+|++||++
T Consensus 250 ~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 250 QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 34567888899888999999999999999999765433333334446888888887655345678888899999999998
Q ss_pred CCee---eeeeeecCc---eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce
Q 022716 98 SGKC---SQQAELSGE---NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE 151 (293)
Q Consensus 98 ~~~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~ 151 (293)
.-++ +..++.+.. ..-+...+....+++++.|--.++|.++....+...+++..
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence 8777 444443321 12244566777888899999999999999888877766543
No 304
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=3.8e-05 Score=66.84 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=75.1
Q ss_pred eEEEEcCCCCCEEEEEe----CCCeE----EEEeCCCCee----eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 022716 70 DQLCWDPKHADLIATAS----GDKTV----RLWDARSGKC----SQQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137 (293)
Q Consensus 70 ~~~~~~~~~~~~l~s~~----~d~~i----~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~ 137 (293)
.++.|+...+..+.|.. .+|.+ .+|++...+. +..+...+.+.+++++|+.+.++.|..||.+.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 34555544444444432 23332 3456544432 223456788899999999999999999999999998
Q ss_pred cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q 022716 138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 201 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~ 201 (293)
........ ...-.++.++|||+|..+++|+..|.+.+||+.-
T Consensus 289 ~~~~t~~~----------------------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 289 TRGVTLLA----------------------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCCeeeee----------------------eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 65432211 1122346789999999999999999999999853
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.46 E-value=7.3e-05 Score=70.11 Aligned_cols=196 Identities=15% Similarity=0.192 Sum_probs=122.6
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC---
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDA--- 96 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~--- 96 (293)
..|.++.|--++..++.+..+|.|.+=|.+... .... .-...|.+++|+|+. ++++-.+..+++.+-.-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEecccc
Confidence 589999999999999999999999987665321 1222 235679999999974 67666777777765421
Q ss_pred -CCCeee-------------------eeee----------------------ecCceEEEEEcCCCCEEEEEe----CC-
Q 022716 97 -RSGKCS-------------------QQAE----------------------LSGENINITYKPDGTHIAVGN----RD- 129 (293)
Q Consensus 97 -~~~~~~-------------------~~~~----------------------~~~~~~~~~~~~~~~~l~~~~----~d- 129 (293)
-..+.+ ..+. ...+.+++.|--||+++++.. .+
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 111100 0000 112334588989999998843 23
Q ss_pred CeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe---cCCCcEEEEeCCCCEEE
Q 022716 130 DELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG---SADSLVSLWDISEMLCV 205 (293)
Q Consensus 130 ~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---s~d~~i~iwd~~~~~~~ 205 (293)
..+++||-+. ....... -...- .+++|-|.|..+++- ++|+.|.+|.- +|...
T Consensus 222 RkirV~drEg-~Lns~se~~~~l~---------------------~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~h 278 (1265)
T KOG1920|consen 222 RKIRVYDREG-ALNSTSEPVEGLQ---------------------HSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRH 278 (1265)
T ss_pred eeEEEecccc-hhhcccCcccccc---------------------cceeecCCCCeEeeeeecCCCCcEEEEec-CCccc
Confidence 7899999652 1111000 00111 245666766666654 34557888873 44333
Q ss_pred EEe----eccCCCeeEEEEccCCCEEEE---ecCCCcEEEEEcCCCCE
Q 022716 206 RTF----TKLEWPVRTISFSHTGDYIAS---ASEDLFIDISNVHTGRT 246 (293)
Q Consensus 206 ~~~----~~~~~~v~~l~~sp~~~~l~s---~s~d~~i~iw~~~~~~~ 246 (293)
..| .....++..++|+.++..||. ......|++|.+...+-
T Consensus 279 g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 279 GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 332 223345899999999999987 45555599999877653
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.44 E-value=0.0005 Score=55.66 Aligned_cols=184 Identities=18% Similarity=0.215 Sum_probs=109.6
Q ss_pred EEEEEEC-CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee--C-CcCCeeEEEEcCCCCCEEEEEeCC--------Ce
Q 022716 23 VHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--G-HADSVDQLCWDPKHADLIATASGD--------KT 90 (293)
Q Consensus 23 v~~l~~s-~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~--~-h~~~i~~~~~~~~~~~~l~s~~~d--------~~ 90 (293)
...+++. +++ .|+.+..++. .++|........ ..... . .....+.+++.|++ .+.++.... +.
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~~-~~~d~~~g~~~~--~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGGI-AVVDPDTGKVTV--LADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTCE-EEEETTTTEEEE--EEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEE
T ss_pred CceEEEEccCC-EEEEEEcCce-EEEecCCCcEEE--EeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccc
Confidence 6667777 565 5555555444 555776432111 11221 1 33557889999875 577766544 45
Q ss_pred EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEec
Q 022716 91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
+..++.. ++.......-..+..++|+|+++.|++ -+..++|..+++..... +.... +..+. ..
T Consensus 117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~-------~~~~~-------~~ 181 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR-------VFIDF-------PG 181 (246)
T ss_dssp EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE-------EEEE--------SS
T ss_pred eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeee-------eEEEc-------CC
Confidence 6667766 554444444455678999999997764 45677888888753221 11000 00010 01
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc-cCCCEE
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-HTGDYI 227 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l 227 (293)
.....--++++.+|++.++....+.|.++|.+ ++.+..+.-....+++++|. |+.+.|
T Consensus 182 ~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 182 GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence 11124468889999999988889999999987 77777666554589999994 665544
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.7e-06 Score=72.48 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=131.0
Q ss_pred CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee---e-ecCceEEEEEcCCCCEEEEEeC-CCeEEEEEcc
Q 022716 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA---E-LSGENINITYKPDGTHIAVGNR-DDELTILDVR 138 (293)
Q Consensus 64 ~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~ 138 (293)
.|.+.|+.+.. .-.+++.+++.||.++.|--..-.-.... . +-+.+.+++.+.++..+.++.. |..++++|+.
T Consensus 7 mhrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEee--ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 47888887754 34679999999999999974331111111 1 1122345677788888888777 9999999998
Q ss_pred ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeeccCCCee
Q 022716 139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTKLEWPVR 216 (293)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~~~~~v~ 216 (293)
+.......+.......+.|.... ...+.. .-++.-.++.+.++|-... +....-.-|..||.
T Consensus 85 n~DminmiKL~~lPg~a~wv~sk--------Gd~~s~--------IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~ 148 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSK--------GDKISL--------IAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK 148 (558)
T ss_pred ccchhhhcccccCCCceEEecCC--------CCeeee--------EEeecccCCCcEEECCcCCcCccceecccccCceE
Confidence 87665555444444444443211 111111 1233345788999986533 23333445888999
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCC-CCEEE-----E----------EecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 217 TISFSHTGDYIASASEDLFIDISNVHT-GRTVH-----Q----------IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 217 ~l~~sp~~~~l~s~s~d~~i~iw~~~~-~~~~~-----~----------~~~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
.+.++|.+.-+++....|.|.-|.... .+..+ . ..++....+++|+|+++++++-+.|..++.
T Consensus 149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 999999999999999999999999873 21111 1 123456789999999999999998865544
No 308
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=3.4e-06 Score=76.43 Aligned_cols=153 Identities=17% Similarity=0.271 Sum_probs=109.0
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC---------CCeEEE
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---------DKTVRL 93 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~---------d~~i~v 93 (293)
|+-+. .+++.|.+|...|+|-+-|..+.. ..-++.+|++.|.++... +++|+|+|. |..|+|
T Consensus 180 v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~----~iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 180 VTIMR--YNNRNLFCGDTRGTVFLRDPNSFE----TIHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred eEEEE--ecCcEEEeecccceEEeecCCcCc----eeeeeeccccceeeeecc---CCeEEEeecccccccccccchhhh
Confidence 44444 357889999999999998876432 233578999999988764 468888876 566899
Q ss_pred EeCCCCeeeeeeeecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716 94 WDARSGKCSQQAELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
||+++-+.+..+.++..+.-+.|.|. ...+++++..|.+.+.|..+.. +|......+......
T Consensus 251 YDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls----------------NP~~~~~~v~p~~s~ 314 (1118)
T KOG1275|consen 251 YDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS----------------NPPAGVKMVNPNGSG 314 (1118)
T ss_pred hhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC----------------CCccceeEEccCCCc
Confidence 99998777666665555555677774 3578888999999988843311 011111222233344
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEeCC
Q 022716 173 CYCIAIDPMGRYFAVGSADSLVSLWDIS 200 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~ 200 (293)
+...++++++..+|.|..+|.|.+|--.
T Consensus 315 i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 315 ISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ceeEEecCCCceEEEecccCcEeeecCC
Confidence 7788999999999999999999999743
No 309
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.42 E-value=0.00052 Score=56.15 Aligned_cols=198 Identities=14% Similarity=0.216 Sum_probs=130.3
Q ss_pred EEEEcCCCCCEEEEEeCCCe-EEEEeCCCCeeeeeeeecC-ceE--EEEEcCCCCEEEEEe-----CCCeEEEEEcc-cc
Q 022716 71 QLCWDPKHADLIATASGDKT-VRLWDARSGKCSQQAELSG-ENI--NITYKPDGTHIAVGN-----RDDELTILDVR-KF 140 (293)
Q Consensus 71 ~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~~~-----~d~~i~l~d~~-~~ 140 (293)
.++.+|.....++.+-.-|+ ..+||.++++....+.... ... .-.|+|||++|++.- ..|.|-+||.+ +.
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 45667755556666655444 5789999988766543221 111 368999999999864 35689999998 55
Q ss_pred ceeeeec-ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC--CEEEEecCCCcEEEEeCCCCEEEEEee----ccCC
Q 022716 141 KPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG--RYFAVGSADSLVSLWDISEMLCVRTFT----KLEW 213 (293)
Q Consensus 141 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~gs~d~~i~iwd~~~~~~~~~~~----~~~~ 213 (293)
..+.+.. ++....++.|.++++.+.+..+. |.-+|+. ..|=..+++-++.+.|..+++.+.+.. -|..
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGG-----I~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGG-----IETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCC-----CccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 5555543 46667888899998777766654 2335553 335556777788888999998777632 2667
Q ss_pred CeeEEEEccCCCEEEEecCCCc-------EEEEEcCCCCEEEEEe--------cCCCcceeEECCCCCeEEEEEcCC
Q 022716 214 PVRTISFSHTGDYIASASEDLF-------IDISNVHTGRTVHQIP--------CRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~-------i~iw~~~~~~~~~~~~--------~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.++.+++.++|..++..=..+. +.++. .+..+..+. .+.-+-+|++++++..+|.++=-+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 8999999999976655432221 23333 222222221 234578999999999998888654
No 310
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.42 E-value=9.9e-05 Score=58.20 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=101.9
Q ss_pred ecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC--eeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 16 YTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS--VDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~--i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
...|...|+-+.-..+.+ .+..++.|.++++.+++-... ....|... ++.++++++ +.++++.+....|.
T Consensus 111 cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~------~~~~h~~~~~~ns~~~snd-~~~~~~Vgds~~Vf 183 (344)
T KOG4532|consen 111 CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN------KFAVHNQNLTQNSLHYSND-PSWGSSVGDSRRVF 183 (344)
T ss_pred ecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc------cceeeccccceeeeEEcCC-CceEEEecCCCcce
Confidence 334444333333223332 467788899999988863211 12234433 678888886 56888888888999
Q ss_pred EEeCCCCee--eeee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 93 LWDARSGKC--SQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 93 vwd~~~~~~--~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
.|.+..... .... ....+..+..|+.....++++..||++.+||+|........+-.. -..
T Consensus 184 ~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst---------------rp~ 248 (344)
T KOG4532|consen 184 RYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST---------------RPH 248 (344)
T ss_pred EEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc---------------CCC
Confidence 998865421 1211 223445578888888999999999999999998754322111000 001
Q ss_pred CCCCEEEEEECCCCC--EEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 169 GNAGCYCIAIDPMGR--YFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~--~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
+.+.+-.+.|+|.|. +|...-.-+.+++-|++++...+.+
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 233344455554432 2333334467888999887655544
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.38 E-value=0.00066 Score=54.44 Aligned_cols=197 Identities=17% Similarity=0.116 Sum_probs=114.4
Q ss_pred CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee-eecC
Q 022716 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSG 109 (293)
Q Consensus 31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~ 109 (293)
++..+++++.++.+..||.... .......+.+..... ... . ...++.+..++.+..+|..+++..... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~~~~~~~~--~~~--~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG--KVLWRFDLPGPISGA--PVV--D-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS--EEEEEEECSSCGGSG--EEE--E-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred eCCEEEEEcCCCEEEEEECCCC--CEEEEeeccccccce--eee--c-ccccccccceeeeEecccCCcceeeeeccccc
Confidence 5667888889999999998643 123333332211111 111 1 245666778889999999999877663 3221
Q ss_pred c----eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE
Q 022716 110 E----NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185 (293)
Q Consensus 110 ~----~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (293)
+ ........++..++++..++.+..+|+++++.+-.......... ..+. . -.....-.+..++ .+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~-------~~~~--~-~~~~~~~~~~~~~-~v 176 (238)
T PF13360_consen 108 PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS-------SPIS--S-FSDINGSPVISDG-RV 176 (238)
T ss_dssp CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---------EE--E-ETTEEEEEECCTT-EE
T ss_pred cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC-------ccee--e-ecccccceEEECC-EE
Confidence 1 12223333478889998899999999998876554432211000 0000 0 0001111122244 66
Q ss_pred EEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716 186 AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 248 (293)
Q Consensus 186 ~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~ 248 (293)
..++.++.+.-+|+++++.+-+. ....+..+ ..+++..|+.++.++.+..+|..+|+.+-
T Consensus 177 ~~~~~~g~~~~~d~~tg~~~w~~--~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 177 YVSSGDGRVVAVDLATGEKLWSK--PISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEECCTSSEEEEETTTTEEEEEE--CSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEcCCCeEEEEECCCCCEEEEe--cCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 66666775333499999855322 22233332 34677888888899999999999998764
No 312
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.32 E-value=0.0016 Score=56.18 Aligned_cols=247 Identities=11% Similarity=0.101 Sum_probs=131.2
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-----------------------cee----------------EEEe
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------------------KVK----------------DIEL 62 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-----------------------~~~----------------~~~~ 62 (293)
.|+.+.|.++...|+.|...|.|-+|....+... .+. ..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999865322100 000 0112
Q ss_pred eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC---------ceEEEEEc-----CCC---CEEEE
Q 022716 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITYK-----PDG---THIAV 125 (293)
Q Consensus 63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~-----~~~---~~l~~ 125 (293)
....++|++++.+. -.+++.|.++|.+.|.|++....+....... .+.++.|. .|+ -.+++
T Consensus 83 ~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 23467899998863 4588889999999999998877666543332 24455554 333 36889
Q ss_pred EeCCCeEEEEEccc-cceeeeecccceeeeeEEecCCCEEE--EecCCCCEEEEEEC-------C--CCCEEEEecCCCc
Q 022716 126 GNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFF--LTTGNAGCYCIAID-------P--MGRYFAVGSADSL 193 (293)
Q Consensus 126 ~~~d~~i~l~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~-------~--~~~~l~~gs~d~~ 193 (293)
|+..|.+.+|.+.- ..-..... .........+.... ....+....+++-- + .-.-+++...+..
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~----~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQ----FAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEE----EEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EeCCCCEEEEEEecCCCCceEEE----EeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 99999999987641 11101000 00000000111000 00011111111100 0 1122344445778
Q ss_pred EEEEeCCCCEEEEEeeccCCCeeEEEEc-----cCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC-----CcceeEECC
Q 022716 194 VSLWDISEMLCVRTFTKLEWPVRTISFS-----HTGDYIASASEDLFIDISNVHTGRTVHQIPCRA-----AMNSVEWNP 263 (293)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-----~i~~~~~sp 263 (293)
++++...+.+..++..........+.+- ..+..|++-..+|.|+++.+..-+.+..+.... .+....+++
T Consensus 237 irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred eEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 9999988776655443332334445553 356678888999999999999988887766532 356788899
Q ss_pred CCCeEEEEEcC
Q 022716 264 KYNLLAYAGDD 274 (293)
Q Consensus 264 ~~~~la~~~~d 274 (293)
+|..+.-.|..
T Consensus 317 ~Gdi~~~~gps 327 (395)
T PF08596_consen 317 NGDIFYWTGPS 327 (395)
T ss_dssp TS-EEEE-SSS
T ss_pred CCCEEEEeCcc
Confidence 99988777653
No 313
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.32 E-value=0.00016 Score=62.85 Aligned_cols=184 Identities=18% Similarity=0.240 Sum_probs=109.4
Q ss_pred CeeEEEEcCCCCCEEEEEeCC---CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCe--EEEEEccccc
Q 022716 68 SVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDE--LTILDVRKFK 141 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~--i~l~d~~~~~ 141 (293)
.+..-.|+|++..+.+..-.. ..+.++|+.+++........+....-+|+|||+.|+... .|+. |.+.|+....
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 344556777765544333222 358899999988777767777777789999999887665 4554 5556766655
Q ss_pred eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCc--EEEEeCCCCEEEEEeeccCCCeeEE
Q 022716 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSL--VSLWDISEMLCVRTFTKLEWPVRTI 218 (293)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~--i~iwd~~~~~~~~~~~~~~~~v~~l 218 (293)
..+ .... .+.-..=.++|+|+.++-.++ .|. |.+++.+.... ..++.....-..-
T Consensus 274 ~~~-Lt~~--------------------~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p 331 (425)
T COG0823 274 LPR-LTNG--------------------FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNP 331 (425)
T ss_pred cee-cccC--------------------CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCc
Confidence 222 1111 111113356788877655543 444 55556655433 2222222211256
Q ss_pred EEccCCCEEEEecC-CCc--EEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEc
Q 022716 219 SFSHTGDYIASASE-DLF--IDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 219 ~~sp~~~~l~s~s~-d~~--i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 273 (293)
.++|||++++..+. +|. |.+.+..++..++.+........-.|.|++..+.+.+.
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 68999999877764 344 67777777665555544444456677888776666554
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=6.1e-05 Score=67.71 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=124.2
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
....++|++++ +++|+-|.-+|.|++.+...+. . .-..|+.. . ..+.+++||+.||.|.|-.+.+
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-----~-~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-----K-TNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFT 102 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCCcc-----c-cccccccc------c-cCCceEEEecCCCcEEEeeccC
Confidence 34677788775 5789999999999999876321 1 11234332 2 2367999999999999998888
Q ss_pred CeeeeeeeecCceEEEEEcCC-----CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 99 GKCSQQAELSGENINITYKPD-----GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
.+......++-+..+++++|+ .+.+++|+.-| +.++.-+-.. ....+......+++
T Consensus 103 ~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg------------------nk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 103 DDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG------------------NKDSVVLSEGEGPI 163 (846)
T ss_pred CccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc------------------CccceeeecCccce
Confidence 776666777788889999987 56899998877 6666532111 11122344556777
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC------eeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP------VRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~------v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
.++.| .|+++|-++.+| |++||+.....+..+...... ...+.|.++.+. +.|=.| +|+|..++
T Consensus 164 ~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGD-SVKICSIK 233 (846)
T ss_pred EEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEecCC-eEEEEEEe
Confidence 77777 478889888777 899999887776655433322 344677666554 443222 35555554
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.30 E-value=8.8e-05 Score=66.15 Aligned_cols=171 Identities=13% Similarity=0.067 Sum_probs=102.7
Q ss_pred CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC----eEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716 87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD----ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
..+.+.+.|..+-+........+....++++|+|+++++.+.+. ++...+..... ..+.++..+
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-----------~~vvfni~~- 280 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-----------WVVVFNIAR- 280 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-----------eEEEEchHH-
Confidence 35667777777666666666677777889999999998886322 22222221100 111111111
Q ss_pred EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC----C-EEEEEeeccCCCeeEEEEccCCCEEEEec-CCCcE
Q 022716 163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----M-LCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLFI 236 (293)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~----~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~d~~i 236 (293)
.-++.++|++...+ ++.|.+.|.++ + ..+..+ ........+.++|||++++.++ .+.++
T Consensus 281 ------------iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 281 ------------IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred ------------HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcE
Confidence 01234567766653 67899999987 3 333333 3455778999999999986655 68999
Q ss_pred EEEEcCCCCE------------EEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 237 DISNVHTGRT------------VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 237 ~iw~~~~~~~------------~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.+.|+.+.+. +.+......-.-.+|.++|+.+.+--.|. .+-.|++++
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~ds--------qv~kwn~~~ 405 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDS--------QIVKWNIEA 405 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecc--------eeEEEehHH
Confidence 9999988553 22222222334578888887544444443 444466654
No 316
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.29 E-value=1.3e-05 Score=71.20 Aligned_cols=221 Identities=13% Similarity=0.143 Sum_probs=137.6
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC--CeeEEEEcCCC--CCEEEEEeCCCeEEEEe
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQLCWDPKH--ADLIATASGDKTVRLWD 95 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~--~i~~~~~~~~~--~~~l~s~~~d~~i~vwd 95 (293)
..++..+..+|.|+-+|.|+.-|- .+-|++....+.. ...|.. .|..+.|+|.. ...+++.+.. ...+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecCcc-hhhhhh
Confidence 357788899999999999988775 4446664322221 122332 25566676532 2345544443 445888
Q ss_pred CCCC--eeeeeee-ec-CceEEEEEcCCC-CEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEecC
Q 022716 96 ARSG--KCSQQAE-LS-GENINITYKPDG-THIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 96 ~~~~--~~~~~~~-~~-~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
+... +.+..+. .+ ..++.+-|.|.. ..+++++-|-.++.||+++... .... ..-
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~--------------------~~w 157 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST--------------------SSW 157 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee--------------------ecc
Confidence 7433 2222221 12 234567787654 4788899999999999987431 1110 001
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccC-CCEEEEecCCCcEEEEEcCCCCE-
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRT- 246 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~-~~~l~s~s~d~~i~iw~~~~~~~- 246 (293)
......++++.....+.+.+..+.|.+||.+.+ .++..+++|...|+.++|+.. ...+.+++.|++|++||-.....
T Consensus 158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 112234555555555666667778999999865 566778888889999999754 45688999999999999875432
Q ss_pred -EEEEecCCCcceeEECCCCC
Q 022716 247 -VHQIPCRAAMNSVEWNPKYN 266 (293)
Q Consensus 247 -~~~~~~~~~i~~~~~sp~~~ 266 (293)
.+..+..-+|..-.+-|-|.
T Consensus 238 ~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 238 SKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred cceeccccCcceeccccccCc
Confidence 34444555666666666553
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=1.5e-05 Score=69.30 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~ 244 (293)
....+.|.+++|+...++.|..||+|.+||...+. ..+......++.++|+|+|..++.|+..|.+.+||....
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 34567889999999999999999999999987763 334456678899999999999999999999999998754
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00013 Score=65.59 Aligned_cols=168 Identities=18% Similarity=0.253 Sum_probs=111.8
Q ss_pred cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee
Q 022716 66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR 145 (293)
Q Consensus 66 ~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~ 145 (293)
.+.+++.+++ ...|+-|.-+|.|++.+.+... .....+... .-+|.++++|+.||++.+..+-+......
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc-----ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456666665 3578889999999999865432 111111111 56799999999999999988766554443
Q ss_pred ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC-----CCEEEEecCCCcEEEEeCC---CCEEEEEeeccCCCeeE
Q 022716 146 RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM-----GRYFAVGSADSLVSLWDIS---EMLCVRTFTKLEWPVRT 217 (293)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~gs~d~~i~iwd~~---~~~~~~~~~~~~~~v~~ 217 (293)
..+.. ++.+++++|+ .+.+++|+..| +.++.-+ +...+ .+..-+++|.+
T Consensus 109 ~df~r---------------------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~ 165 (846)
T KOG2066|consen 109 YDFKR---------------------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHS 165 (846)
T ss_pred EecCC---------------------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEE
Confidence 33332 3456777887 56789999998 8777532 11111 34556789999
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCc------ceeEECCCCCeEE
Q 022716 218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAM------NSVEWNPKYNLLA 269 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i------~~~~~sp~~~~la 269 (293)
+.| .|.++|=++++| |+++|+.+++.+..++. +..+ ..+.|.++...+.
T Consensus 166 i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 166 IKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred EEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 998 577888888777 69999999888876643 2223 2478877654443
No 319
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0022 Score=55.47 Aligned_cols=220 Identities=20% Similarity=0.202 Sum_probs=138.5
Q ss_pred EEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe--CCCeEEEEeCCCC
Q 022716 23 VHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSG 99 (293)
Q Consensus 23 v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~ 99 (293)
-..++++++++ ..++...++.|.+.|..... ... ....+. .-..+.+.|++..+.++-. .++.+.+.|..+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~--~~~-~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT--VLG-SIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccc--eee-Eeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 34678888887 45666667999998855322 111 112233 3456788888766666655 4788999998888
Q ss_pred eeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 100 KCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
...........+..+++.|+|+.+.+.. .++++.+.|.......+ ......+ .......-+++
T Consensus 151 ~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~---------------~~~~~P~~i~v 214 (381)
T COG3391 151 KVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLV---------------GVGTGPAGIAV 214 (381)
T ss_pred eEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccccc---------------ccCCCCceEEE
Confidence 7776654444568899999999776665 68899999976654332 1000000 00011224667
Q ss_pred CCCCCEEEEec-C--CCcEEEEeCCCCEEEEEeeccCC-CeeEEEEccCCCEEEEecC-CCcEEEEEcCCCCEEEEEecC
Q 022716 179 DPMGRYFAVGS-A--DSLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASE-DLFIDISNVHTGRTVHQIPCR 253 (293)
Q Consensus 179 ~~~~~~l~~gs-~--d~~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~s~s~-d~~i~iw~~~~~~~~~~~~~~ 253 (293)
+|++..+-+.. . ++.+...|..++........-.. ....+.++|+|.++..... .+.+.+-|..+..........
T Consensus 215 ~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 215 DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 78877443332 2 36899999988766554222222 4667899999999988754 488999998887766654322
Q ss_pred C----CcceeEECC
Q 022716 254 A----AMNSVEWNP 263 (293)
Q Consensus 254 ~----~i~~~~~sp 263 (293)
. .+..+++.+
T Consensus 295 ~~~~~~~~~~~~~~ 308 (381)
T COG3391 295 NEALGEPVSIAISP 308 (381)
T ss_pred ccccccceecccee
Confidence 2 244555544
No 320
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.23 E-value=0.0011 Score=53.34 Aligned_cols=194 Identities=19% Similarity=0.323 Sum_probs=99.7
Q ss_pred EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--ceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVR 138 (293)
Q Consensus 61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~l~d~~ 138 (293)
.+++-...+..++|+|+...+++.....+.|.-.+. +|+.+..+.+.+ -.-.+++.-++.++++--.++++.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455656679999999986667777777888887786 467777666543 45678888888777776668999998874
Q ss_pred ccce-e-----eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC---CEEEE--E
Q 022716 139 KFKP-I-----HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---MLCVR--T 207 (293)
Q Consensus 139 ~~~~-~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~---~~~~~--~ 207 (293)
.... + .....+.. ..++...--++++|.++.|.++-...-..||.++. ...+. .
T Consensus 95 ~~~~~~~~~~~~~~~l~~~---------------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFP---------------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp ---TT--EEEEEEEE---S------------------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred ccccccchhhceEEecccc---------------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 3211 1 11111100 01122233345555444444444333344443321 11111 1
Q ss_pred e------eccCCCeeEEEEccC-CCEEEEecCCCcEEEEEcCCCCEEEEEecCCC-------c---ceeEECCCCCeEEE
Q 022716 208 F------TKLEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRAA-------M---NSVEWNPKYNLLAY 270 (293)
Q Consensus 208 ~------~~~~~~v~~l~~sp~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~-------i---~~~~~sp~~~~la~ 270 (293)
. ......+.+++|+|. +++++.......|-..| .+|+.+..+..... + -.|+|.|+|+++++
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 1 112346889999987 45667777888899999 67887776665442 2 24788888877666
Q ss_pred E
Q 022716 271 A 271 (293)
Q Consensus 271 ~ 271 (293)
+
T Consensus 239 s 239 (248)
T PF06977_consen 239 S 239 (248)
T ss_dssp E
T ss_pred c
Confidence 5
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.22 E-value=3.3e-05 Score=70.28 Aligned_cols=176 Identities=12% Similarity=0.154 Sum_probs=118.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
++.++-|+-...+..+|+++.+..+..+.... +.-| ..+++.+.+|...|+|.+-|+++.+..+...
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---------- 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFD---------- 214 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeee----------
Confidence 34555666666777789988877666665553 3333 3467899999999999999999988777643
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCCCEEEEecC---------CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC-CCEE
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA---------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT-GDYI 227 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l 227 (293)
++.+.+ .+|+-.|+.|++++- |.-|++||++..+.+.-+.-+. ...=+.|.|. ...+
T Consensus 215 ----------aHs~si--SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-~P~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 215 ----------AHSGSI--SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-GPQFLRFHPSLTTRL 281 (1118)
T ss_pred ----------ccccce--eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-CchhhhhcccccceE
Confidence 222222 244456777776653 4457889988765543332222 2245778887 4568
Q ss_pred EEecCCCcEEEEEcCCC-----CEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 228 ASASEDLFIDISNVHTG-----RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 228 ~s~s~d~~i~iw~~~~~-----~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
+.+|.-|...+-|..+- ......+....+.+..+|++++.||.|..++.+-.
T Consensus 282 ~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred EEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 88889999988884432 12233345556999999999999999998875544
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.16 E-value=7.5e-07 Score=77.65 Aligned_cols=198 Identities=20% Similarity=0.291 Sum_probs=126.3
Q ss_pred ccEEEEEECCCCC--eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe----CCCeEEEE
Q 022716 21 KKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS----GDKTVRLW 94 (293)
Q Consensus 21 ~~v~~l~~s~~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~----~d~~i~vw 94 (293)
.-+.|++++.+.+ .++.|..+|.|-+-.+...... . ....++|..++++++|++-+.+.|+.|- .|..+.||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s-~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-S-AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-c-ceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3577888776554 5788999999999776532221 1 1235678889999999988767776552 26779999
Q ss_pred eCCCC--eeeeeeeec----CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 95 DARSG--KCSQQAELS----GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 95 d~~~~--~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
|+.+. .+.....+. ....+++|..+.+.+++|.....+.++|+|....... .++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-----svn--------------- 194 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-----SVN--------------- 194 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-----hhh---------------
Confidence 99776 222221221 1223677778889999999999999999984321100 000
Q ss_pred CCCCEEEEEECC-CCCEEEEecCCCcEEEEe-CCCCEEE-EEeeccC----CCeeEEEEccCCC-EEEEecCC-CcEEEE
Q 022716 169 GNAGCYCIAIDP-MGRYFAVGSADSLVSLWD-ISEMLCV-RTFTKLE----WPVRTISFSHTGD-YIASASED-LFIDIS 239 (293)
Q Consensus 169 ~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd-~~~~~~~-~~~~~~~----~~v~~l~~sp~~~-~l~s~s~d-~~i~iw 239 (293)
...+.-+.++| .+.++++-. |+.|.+|| .++.+.. ..+...+ ..+..++|+|... .+++...| ++|+++
T Consensus 195 -Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 195 -TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred -hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 00112355677 567777666 99999999 4443221 1222222 2489999999643 56666655 779999
Q ss_pred EcC
Q 022716 240 NVH 242 (293)
Q Consensus 240 ~~~ 242 (293)
++.
T Consensus 273 di~ 275 (783)
T KOG1008|consen 273 DIC 275 (783)
T ss_pred ccc
Confidence 874
No 323
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.14 E-value=0.00083 Score=60.16 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=71.0
Q ss_pred EcCCCCEEEEEeCCCeEEEEEccc-----cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-
Q 022716 116 YKPDGTHIAVGNRDDELTILDVRK-----FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS- 189 (293)
Q Consensus 116 ~~~~~~~l~~~~~d~~i~l~d~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs- 189 (293)
+.++|++... .++++.++|.++ ...+.....+ ....-++++|||+++++++
T Consensus 284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG---------------------KsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP---------------------KNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC---------------------CCccceEECCCCCEEEEeCC
Confidence 3467887766 367899999876 2222222211 2223578899999876655
Q ss_pred CCCcEEEEeCCCCEE------------EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 190 ADSLVSLWDISEMLC------------VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 190 ~d~~i~iwd~~~~~~------------~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
.++++.++|+++... ..+. .........+|.++|....|--.|..|-.||+.+
T Consensus 341 lS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 341 LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcEEEEEChhhhhhhhccCCccceEEEee-ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 489999999987542 2222 1233456788999998888888999999999876
No 324
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.12 E-value=0.0043 Score=53.14 Aligned_cols=237 Identities=17% Similarity=0.284 Sum_probs=127.9
Q ss_pred CCCCCeEEEE---------eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 29 NCTGTKLASG---------SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 29 s~~~~~l~s~---------~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
|||+++++.. +..+...+||+... ... .+......+....|+|++ +.++-. .++.|.+++..++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~---~~~--~l~~~~~~~~~~~~sP~g-~~~~~v-~~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG---EIT--PLTPPPPKLQDAKWSPDG-KYIAFV-RDNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT---EEE--ESS-EETTBSEEEE-SSS-TEEEEE-ETTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC---ceE--ECcCCccccccceeecCC-CeeEEE-ecCceEEEECCCC
Confidence 5788877663 33467788888752 221 222225668889999985 444433 4678999988776
Q ss_pred eeeeeeeec------------------CceEEEEEcCCCCEEEEEeCCC-eE----------------------------
Q 022716 100 KCSQQAELS------------------GENINITYKPDGTHIAVGNRDD-EL---------------------------- 132 (293)
Q Consensus 100 ~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~d~-~i---------------------------- 132 (293)
...+...-. +....+-|+||+++|+....|. .+
T Consensus 74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 443321111 1123578999999988755322 22
Q ss_pred -------EEEEccccceeeee------cccceeeeeEEecCCCEEEEe-cCC--------------CCE-----------
Q 022716 133 -------TILDVRKFKPIHRR------KFGYEVNEIAWNMTGEMFFLT-TGN--------------AGC----------- 173 (293)
Q Consensus 133 -------~l~d~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~-~~~--------------~~~----------- 173 (293)
.++|+.+.+..... ....-+..+.|.+++..+.+. ... ..+
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 22333322211000 011224567787777622221 110 000
Q ss_pred ----EEEEEC-CCC-CEEEEecCCCcEEE--EeCCCCEEEEEeeccCCCeeE-EEEccCCCEE-EEecCC----CcEEEE
Q 022716 174 ----YCIAID-PMG-RYFAVGSADSLVSL--WDISEMLCVRTFTKLEWPVRT-ISFSHTGDYI-ASASED----LFIDIS 239 (293)
Q Consensus 174 ----~~~~~~-~~~-~~l~~gs~d~~i~i--wd~~~~~~~~~~~~~~~~v~~-l~~sp~~~~l-~s~s~d----~~i~iw 239 (293)
....+. +++ .++.....+|--+| ++...+. .+.++...+.|.. +.++++++.| .++..+ ..++.-
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 022332 444 44555556675554 4555554 4466667778855 6788887765 455543 346666
Q ss_pred EcCCCCEEEEEecCCCcc-eeEECCCCCeEEEEEc
Q 022716 240 NVHTGRTVHQIPCRAAMN-SVEWNPKYNLLAYAGD 273 (293)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~-~~~~sp~~~~la~~~~ 273 (293)
++..+..+..+.+..... .+.|||++++++..-.
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 666356677777776777 9999999999876644
No 325
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.11 E-value=0.0034 Score=54.65 Aligned_cols=234 Identities=13% Similarity=0.148 Sum_probs=124.2
Q ss_pred CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeE-EEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc
Q 022716 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ-LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110 (293)
Q Consensus 32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 110 (293)
+..+..++.+|.+..+|.++.. ......+.+ .+.+ .... ...++.+..++.+.-+|.++|+.+-.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~~---~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGE--VAWQTKVAG---EALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCC--CcccccCCC---ceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 4456667788888888876432 222222222 1111 1111 23566677889999999999987665543322
Q ss_pred eEEEE--EcC--CCCEEEEEeCCCeEEEEEccccceeeeecccce-----e---eeeEEec--CCCEEEEecCCCCEEEE
Q 022716 111 NINIT--YKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-----V---NEIAWNM--TGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 111 ~~~~~--~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~-----~---~~v~~~~--~~~~~~~~~~~~~~~~~ 176 (293)
...+. -+| .+..++.++.++.+..+|..+.+..-....... . ..+.-.| .+..+++...++.+.++
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 11100 011 123567777888888888877654333221100 0 0000000 12222332223333332
Q ss_pred EE-----------------CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC-CeeEEEEccCCCEEEEecCCCcEEE
Q 022716 177 AI-----------------DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASEDLFIDI 238 (293)
Q Consensus 177 ~~-----------------~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~s~s~d~~i~i 238 (293)
.. ...+..+..++.+|.+..+|.++++.+=....... ...+... .+.+|+.++.||.+..
T Consensus 272 d~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 272 DLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred ECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 21 01345666778899999999988865432221111 1111111 2567888899999999
Q ss_pred EEcCCCCEEEEEecC-CCcceeEECC--CCCeEEEEEcCCCCC
Q 022716 239 SNVHTGRTVHQIPCR-AAMNSVEWNP--KYNLLAYAGDDKNKY 278 (293)
Q Consensus 239 w~~~~~~~~~~~~~~-~~i~~~~~sp--~~~~la~~~~d~~~~ 278 (293)
.|..+|+.+...... ..+.+ +| .+..|..++.|+.++
T Consensus 350 ld~~tG~~~~~~~~~~~~~~s---~P~~~~~~l~v~t~~G~l~ 389 (394)
T PRK11138 350 INREDGRFVAQQKVDSSGFLS---EPVVADDKLLIQARDGTVY 389 (394)
T ss_pred EECCCCCEEEEEEcCCCccee---CCEEECCEEEEEeCCceEE
Confidence 999999987665432 22221 22 345777777776443
No 326
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=3.8e-05 Score=67.25 Aligned_cols=90 Identities=13% Similarity=0.181 Sum_probs=73.8
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee-EEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE--
Q 022716 173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR-TISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-- 249 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~-- 249 (293)
+.-+.|+|.-..+|.++.+|.|.+..+. ..++-++..+..+++ +++|.|||+.||.|-.||+|++-|+.++..+..
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~ 101 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL 101 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence 3456677888899999999999999887 666777776766777 999999999999999999999999999987766
Q ss_pred EecCCCcceeEECC
Q 022716 250 IPCRAAMNSVEWNP 263 (293)
Q Consensus 250 ~~~~~~i~~~~~sp 263 (293)
+.-...|.++-|.|
T Consensus 102 ~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 102 FSVETDISKGIWDR 115 (665)
T ss_pred cccccchheeeccc
Confidence 33345677788864
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.02 E-value=0.0022 Score=56.12 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=95.6
Q ss_pred CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEE-cccccee
Q 022716 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD-VRKFKPI 143 (293)
Q Consensus 65 h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d-~~~~~~~ 143 (293)
..-....+.++|.+. .++ ...||.-.++.....+- ...+.....+|.+.++ +++-...++|.++. +.... .
T Consensus 31 ~~~~p~~ls~npngr-~v~-V~g~geY~iyt~~~~r~----k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~-~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGR-FVL-VCGDGEYEIYTALAWRN----KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEV-V 102 (443)
T ss_dssp -SS--SEEEE-TTSS-EEE-EEETTEEEEEETTTTEE----EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-T-T
T ss_pred CCcCCeeEEECCCCC-EEE-EEcCCEEEEEEccCCcc----cccCceeEEEEecCcc-EEEEECCCeEEEEEcCcccc-c
Confidence 344567889999754 433 36678888887433221 2234555788888554 56666678888862 22111 1
Q ss_pred eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC
Q 022716 144 HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 223 (293)
Q Consensus 144 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 223 (293)
.....+.. +..+. + |..|...+.+ .|.+||..++..++.+.. .+|..+.|+++
T Consensus 103 k~i~~~~~---------------------~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~ 155 (443)
T PF04053_consen 103 KSIKLPFS---------------------VEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDD 155 (443)
T ss_dssp -----SS----------------------EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred eEEcCCcc---------------------cceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECC
Confidence 11111111 11121 2 6666666544 899999999988887743 24899999999
Q ss_pred CCEEEEecCCCcEEEEEcCCC-----------CEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 224 GDYIASASEDLFIDISNVHTG-----------RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 224 ~~~l~s~s~d~~i~iw~~~~~-----------~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
|.++|..+.+ .++|.+.... .....+.. ..+|.+..|..+ .|.++....-.|...+.+.-|-++|
T Consensus 156 g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkYl~~Ge~~~i~~ld 232 (443)
T PF04053_consen 156 GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKYLVNGETGIIAHLD 232 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEEEETTEEEEEEE-S
T ss_pred CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEEEEcCCcceEEEcC
Confidence 9999998876 4555544322 02222222 567899999665 6666666544443444444555554
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00092 Score=58.25 Aligned_cols=187 Identities=16% Similarity=0.233 Sum_probs=107.4
Q ss_pred ccccEEEEEECCCCCeEEEEeC---C-CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 19 HKKKVHSVAWNCTGTKLASGSV---D-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~---d-g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
-...+..-+|+|++..++.-+. . ..+.+++++...... ...+.++.. .-.|+|++..++++...|+...+|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccC---CccCCCCCCEEEEEECCCCCccEE
Confidence 3456777889999987764422 2 357777877543322 233444433 447899988888888888876555
Q ss_pred --eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 95 --DARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 95 --d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
|+..+.........+....-.|+|||++++-.+. .| .|.+.|+......+ +.++
T Consensus 266 ~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----------iT~~----------- 324 (425)
T COG0823 266 LMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----------LTFS----------- 324 (425)
T ss_pred EEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----------eecc-----------
Confidence 6666554332333444446679999999887763 34 34555554433211 1111
Q ss_pred CCCEEEEEECCCCCEEEEecC-CCc--EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716 170 NAGCYCIAIDPMGRYFAVGSA-DSL--VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE 232 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~-d~~--i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 232 (293)
......-.++|+|++++..+. +|. |.+.|+.++...+.+ ........-++.|+++.+...+.
T Consensus 325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence 111113456788888776664 343 555566554432222 22233445567888887755544
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0016 Score=59.43 Aligned_cols=213 Identities=10% Similarity=0.093 Sum_probs=118.6
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCce-EEEEEc-CCCCEEEEEeCCC-----eEEEEEcccc
Q 022716 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-INITYK-PDGTHIAVGNRDD-----ELTILDVRKF 140 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~d~-----~i~l~d~~~~ 140 (293)
.|.++ ++. +..++-|+.+|.|.+.+-.- +..+.++....- +..-+. .+...|++.++|. .+++||++..
T Consensus 27 ~isc~--~s~-~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISCC--SSS-TGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeEE--cCC-CceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 44443 443 45788899999988876322 221222222111 222222 3335777777654 4899998654
Q ss_pred ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC----CCEEEEEeeccCCCee
Q 022716 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS----EMLCVRTFTKLEWPVR 216 (293)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~----~~~~~~~~~~~~~~v~ 216 (293)
..... +.-+....-.+. .......+..+++++.+-+.+|+|-.+|.|..+.=+ .+.+..-...-..||+
T Consensus 103 ~~n~s---P~c~~~~ri~~~----~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 103 DKNNS---PQCLYEHRIFTI----KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred CCCCC---cceeeeeeeecc----CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 32110 000000000000 000124567789999999999999999999999521 2222221223356999
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCCCCE-EEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 217 TISFSHTGDYIASASEDLFIDISNVHTGRT-VHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 217 ~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.+.|..+++.++-+..-..|.+|.+..... ...+. +..++++.+|++.-+.|..|+...--.+...+.-.+|.||
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeec
Confidence 999999888754455556677887763232 23243 3457899999986665555554432222333555566555
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.01 E-value=0.00027 Score=65.27 Aligned_cols=144 Identities=17% Similarity=0.269 Sum_probs=91.7
Q ss_pred CCEEE-EEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCC-------CCEEEEEeCCCeEEEEEccccceeeeecccc
Q 022716 79 ADLIA-TASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-------GTHIAVGNRDDELTILDVRKFKPIHRRKFGY 150 (293)
Q Consensus 79 ~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~ 150 (293)
...|+ .......+.-.|+..|+.+..+..+....-..+.|+ ....++|-.++.+..||+|-...
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-------- 564 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-------- 564 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC--------
Confidence 34433 334457788889999999888887665433445554 23567888899999999985321
Q ss_pred eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEE
Q 022716 151 EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIAS 229 (293)
Q Consensus 151 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s 229 (293)
.++|+..... .......|++.+.+ .+||+|+.+|.|++||- .+...+ .+.+...||..|+.+.||+|++.
T Consensus 565 ---k~v~~~~k~Y----~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 565 ---KLVDSQSKQY----SSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred ---ceeecccccc----ccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 0111111100 12223456665544 46899999999999994 333333 35577889999999999999754
Q ss_pred ecCCCcEEEEE
Q 022716 230 ASEDLFIDISN 240 (293)
Q Consensus 230 ~s~d~~i~iw~ 240 (293)
-.. ..+-+.+
T Consensus 636 Tc~-tyLlLi~ 645 (794)
T PF08553_consen 636 TCK-TYLLLID 645 (794)
T ss_pred eec-ceEEEEE
Confidence 333 3444444
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.99 E-value=1.7e-05 Score=43.09 Aligned_cols=36 Identities=39% Similarity=0.571 Sum_probs=32.5
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEee
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~ 48 (293)
...+.+|...|.++.|++.+.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455678999999999999999999999999999995
No 332
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.96 E-value=7.6e-05 Score=60.06 Aligned_cols=175 Identities=17% Similarity=0.326 Sum_probs=109.0
Q ss_pred eee-cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-----CCeeEEEEcCCCCCEEEEEeC
Q 022716 14 REY-TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-----DSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 14 ~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~~l~s~~~ 87 (293)
+.+ ..|.-.|.++.|+.|...++++. |-.|.+|+++... +.......+.|+ ..|++..|+|....++.-.+.
T Consensus 165 rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIID-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred eeccccceeEeeeeeecCchheeeecc-ceeeeeccccccC-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 344 67888999999999988888765 7888999986432 122222333443 457888999988888877888
Q ss_pred CCeEEEEeCCCCe-eee-----eeeec-----------CceEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeeeccc
Q 022716 88 DKTVRLWDARSGK-CSQ-----QAELS-----------GENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKFG 149 (293)
Q Consensus 88 d~~i~vwd~~~~~-~~~-----~~~~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~ 149 (293)
-|.|++-|++... |.. ..... ..+..+.|+++|+++++-. -.++++||.+.. .|+....+.
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechH
Confidence 9999999987432 111 11111 1233478999999887754 579999998754 344443221
Q ss_pred ceeeeeEEecCCCEEEEecCCCC---EEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716 150 YEVNEIAWNMTGEMFFLTTGNAG---CYCIAIDPMGRYFAVGSADSLVSLWDI 199 (293)
Q Consensus 150 ~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~gs~d~~i~iwd~ 199 (293)
...+. ++. ..-.++. -.-+.|+.+.+.+++|+-.+..-+|-.
T Consensus 322 ~~l~~-------~l~-d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 322 CDLMD-------ELN-DVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHH-------HHH-hhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 10000 000 0000111 124667778888888888777777753
No 333
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.94 E-value=0.0065 Score=48.68 Aligned_cols=233 Identities=16% Similarity=0.137 Sum_probs=113.8
Q ss_pred EEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC-CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 022716 26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ 104 (293)
Q Consensus 26 l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 104 (293)
++.+++|+.||. -.|..|.|=...++-.........+. ....=..++|+|+ +.+|+.+...|+|+++|+....+...
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD-~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD-CTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC-CcEEEEEcCCCeEEEEecccceeEEc
Confidence 456788887654 45777777654433222222222222 1223457899997 56889999999999999865433211
Q ss_pred ---e----eecCceEEEEEcCC------CCEEEEEeCCCeEEEEEc--cccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 105 ---A----ELSGENINITYKPD------GTHIAVGNRDDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 105 ---~----~~~~~~~~~~~~~~------~~~l~~~~~d~~i~l~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
. .....+..+.|.+. ...|++-..+|.++=+=+ .+.+.-+ +...+.+ ....
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~------e~hsfsf--------~~~y 146 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ------ENHSFSF--------SSHY 146 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce------eeEEEEe--------cccC
Confidence 0 01122233444321 113455555555443322 1100000 0111111 1112
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE---EEEccCCCEEEEecCCCcE------EEEE
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT---ISFSHTGDYIASASEDLFI------DISN 240 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~---l~~sp~~~~l~s~s~d~~i------~iw~ 240 (293)
..++.++.++|..+.|++|+.... +++. -+.....+++ +.=.|-.+.+ +..+|... .++.
T Consensus 147 p~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~~~~~~ 215 (282)
T PF15492_consen 147 PHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQV-TSSEDDITASSKRRGLLR 215 (282)
T ss_pred CCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEc-cccCccccccccccceee
Confidence 346778888888888777765432 0100 0011111111 1112222221 22222211 2232
Q ss_pred cCCCCEE-EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE
Q 022716 241 VHTGRTV-HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF 285 (293)
Q Consensus 241 ~~~~~~~-~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~ 285 (293)
+-+.+.. ++.+....|-.+..||||+.||+...+|.+..|+-=.+
T Consensus 216 ~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 216 IPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 2222211 12234567899999999999999999987776655333
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.92 E-value=0.0041 Score=54.52 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=71.3
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
+...........+.++|+|++++.+ .||.-.|+..... + ... .+.-....|.+. +.++.-.....|.+
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r--~k~----~G~g~~~vw~~~--n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---R--NKA----FGSGLSFVWSSR--NRYAVLESSSTIKI 93 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---E--EEE----EEE-SEEEE-TS--SEEEEE-TTS-EEE
T ss_pred ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---c--ccc----cCceeEEEEecC--ccEEEEECCCeEEE
Confidence 3343444568899999999998884 4677777763211 1 111 123345678763 34666677888998
Q ss_pred EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
+.--..+....+.....+..+.. |..|...+.+ .+.+||..+.+.+++..... ++.+.|++.++++.+.+
T Consensus 94 ~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 94 YKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVT 163 (443)
T ss_dssp EETTEE-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-
T ss_pred EEcCccccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEe
Confidence 63222221112222322223322 7777777644 89999999988888776553 67788877777666554
No 335
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=8.8e-06 Score=73.81 Aligned_cols=192 Identities=14% Similarity=0.190 Sum_probs=124.2
Q ss_pred eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCC--eEEEEEcc
Q 022716 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDD--ELTILDVR 138 (293)
Q Consensus 62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~--~i~l~d~~ 138 (293)
++.|...-++++|+.. .+.|+.|+..|.|+++++.+|........++. ++.+.=+.||..+++.+.-. ...+|++.
T Consensus 1097 frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 4567778889999875 56788899999999999999976666655443 33455566777666655322 45688875
Q ss_pred cc-ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eec---cCC
Q 022716 139 KF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTK---LEW 213 (293)
Q Consensus 139 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~---~~~ 213 (293)
.. .+.+... ...++.|+..-..-+.|+......+||++++..+.+ +.+ ...
T Consensus 1176 s~~~~~Hsf~------------------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1176 STGGPRHSFD------------------------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred cccCcccccc------------------------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 41 1111110 112455554444456666667799999998876655 222 122
Q ss_pred CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEE
Q 022716 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 288 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~ 288 (293)
.=+...|||+..++. .||. +||++..+.++.+..-..--.=.|||+|+.++.-+. +||.-+||++
T Consensus 1232 ~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred hccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHH
Confidence 236678999887664 3453 899988877776643221123469999999887664 5676666654
No 336
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.85 E-value=7.9e-05 Score=40.24 Aligned_cols=38 Identities=34% Similarity=0.494 Sum_probs=33.3
Q ss_pred EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 203 LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 203 ~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
.....+..|...|.+++|+|+++++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566777888999999999999999999999999995
No 337
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.82 E-value=0.0099 Score=47.16 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=126.9
Q ss_pred CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCce-
Q 022716 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN- 111 (293)
Q Consensus 33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~- 111 (293)
.+++.||..+.+..-|..+.. ......+. ..|-+-+.. -+++++-|...|.+.+.+.++|.....+...+.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~--~~We~ilg---~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGN--LIWEAILG---VRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCc--EEeehhhC---ceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence 455677777777766654321 11111111 112221211 1357888999999999999999655544433332
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeee-eEEecCCCEEEEecCCCCEEEEEE------------
Q 022716 112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTGNAGCYCIAI------------ 178 (293)
Q Consensus 112 ~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~------------ 178 (293)
......+++..+..|+.|++....|.++...+...+.+..+.. -+.++....++++...+.+..+..
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~ 176 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT 176 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh
Confidence 3455678899999999999999999999888777665544322 223332223333332222222111
Q ss_pred -------CC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE-EEEc-cCCCEEEEecCCCcEE--------EE
Q 022716 179 -------DP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT-ISFS-HTGDYIASASEDLFID--------IS 239 (293)
Q Consensus 179 -------~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s-p~~~~l~s~s~d~~i~--------iw 239 (293)
+| -+..+..+.-||.+.-++ ..++.+..+. ...||.. =+-+ |..+.+..+.++.++. +|
T Consensus 177 ~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w 254 (354)
T KOG4649|consen 177 RFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLW 254 (354)
T ss_pred cCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEE
Confidence 11 134455566777777777 5555554332 2233321 1112 5556777777777664 45
Q ss_pred EcCCCCEEEEEecCCCcceeEEC-CCC---CeEEEEEcCCCCCCC
Q 022716 240 NVHTGRTVHQIPCRAAMNSVEWN-PKY---NLLAYAGDDKNKYQA 280 (293)
Q Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~s-p~~---~~la~~~~d~~~~~~ 280 (293)
..++|...+.+-. +--..+++ |.+ .+++.++.|+..++.
T Consensus 255 ~~~~g~t~~vy~~--p~l~F~~h~~~~S~~~ll~~~s~dgkv~il 297 (354)
T KOG4649|consen 255 ATQSGTTLHVYLS--PKLRFDLHSPGISYPKLLRRSSGDGKVMIL 297 (354)
T ss_pred EecCCcEEEEEeC--cccceeccCCCCcchhhhhhhcCCCcEEEE
Confidence 5555533333211 10112222 222 356666667666654
No 338
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.82 E-value=0.018 Score=50.12 Aligned_cols=236 Identities=9% Similarity=0.034 Sum_probs=124.6
Q ss_pred CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC--------Cee-EEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--------SVD-QLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (293)
Q Consensus 31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~--------~i~-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 101 (293)
.+..+..++.+|.+..+|.++.. ......+..... .+. .+.. . .+.++.++.++.+.-+|.++|+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~~v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGK--EIWSVDLSEKDGWFSKNKSALLSGGVTV--A-GGKVYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCc--EeeEEcCCCcccccccccccccccccEE--E-CCEEEEEcCCCEEEEEECCCCCC
Confidence 35577778888888888876432 223222222100 010 1111 1 24566778899999999999987
Q ss_pred eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccccee-------eeeEEecCCCEEEEecCCCCEE
Q 022716 102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-------NEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
+-.....+...+-..- .+..++++..++.+..+|.++.+.+-....+.+. .-+.. +..+++...++.+.
T Consensus 143 ~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~~~~~g~v~ 218 (394)
T PRK11138 143 AWQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIVGGDNGRVS 218 (394)
T ss_pred cccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CCEEEEEcCCCEEE
Confidence 6665554433221111 2346777788899999998877765443321100 00000 01111111111111
Q ss_pred EE----------------------------EECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716 175 CI----------------------------AIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224 (293)
Q Consensus 175 ~~----------------------------~~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 224 (293)
++ ..+| .+..+..++.+|.+..+|..+++.+=+.. .. ....+ ...+
T Consensus 219 a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~-~~~~~--~~~~ 294 (394)
T PRK11138 219 AVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YG-SVNDF--AVDG 294 (394)
T ss_pred EEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CC-CccCc--EEEC
Confidence 11 1112 24456667778999999998886543221 11 11111 2346
Q ss_pred CEEEEecCCCcEEEEEcCCCCEEEEEec-C-CCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 225 DYIASASEDLFIDISNVHTGRTVHQIPC-R-AAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~-~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
..++.++.|+.+...|..+|+.+-.... . ....+... .+.++..++.++.++..+
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 6777888899999999999876543321 1 11111111 245566666666665433
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.022 Score=49.34 Aligned_cols=227 Identities=20% Similarity=0.218 Sum_probs=142.1
Q ss_pred cEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 22 KVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
....+..++++..+..... ...+..-+... ..... ....-...-..+..++.+...+++...+..|.+.|....+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~---n~~~~-~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS---NTVTQ-SLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccc---ceeee-eccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc
Confidence 4556778888865543332 22333333221 11111 0000001223556677766677777778999999988877
Q ss_pred eeeeeeecCceEEEEEcCCCCEEEEEeC---CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716 101 CSQQAELSGENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177 (293)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
..........+..++++|+++.+.+... ++++.+.|..+.........+ ..+ ..++
T Consensus 108 ~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG--------------------~~P-~~~a 166 (381)
T COG3391 108 VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG--------------------NTP-TGVA 166 (381)
T ss_pred eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC--------------------CCc-ceEE
Confidence 7776666667788999999988777665 678888887766654432211 112 5688
Q ss_pred ECCCCCEEEEe-cCCCcEEEEeCCCCEEEE-E---eeccCCCeeEEEEccCCCEEEEecC---CCcEEEEEcCCCCEEEE
Q 022716 178 IDPMGRYFAVG-SADSLVSLWDISEMLCVR-T---FTKLEWPVRTISFSHTGDYIASASE---DLFIDISNVHTGRTVHQ 249 (293)
Q Consensus 178 ~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~-~---~~~~~~~v~~l~~sp~~~~l~s~s~---d~~i~iw~~~~~~~~~~ 249 (293)
++|++..+.+. ..++.|.+.|.......+ . ..........+.++|+|.++...-. ++.+.+.|..++.....
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 99999865554 478999999977654442 1 0112234567889999997655433 36899999988876554
Q ss_pred -EecCC-CcceeEECCCCCeEEEEEc
Q 022716 250 -IPCRA-AMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 250 -~~~~~-~i~~~~~sp~~~~la~~~~ 273 (293)
+.... .-..+..+|+|+.+-+...
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEec
Confidence 33222 3556899999987666643
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.023 Score=49.62 Aligned_cols=216 Identities=11% Similarity=0.121 Sum_probs=110.4
Q ss_pred EEECCCCCeEEEEeCC-----------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 26 VAWNCTGTKLASGSVD-----------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 26 l~~s~~~~~l~s~~~d-----------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
++.+|.|.-+|....+ ..|+||+.... ....+.+.. +.|..+.|+.+ +.|+....||.++++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~---ll~~i~w~~--~~iv~~~wt~~--e~LvvV~~dG~v~vy 106 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK---LLSSIPWDS--GRIVGMGWTDD--EELVVVQSDGTVRVY 106 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC---EeEEEEECC--CCEEEEEECCC--CeEEEEEcCCEEEEE
Confidence 3445666556555444 14788876532 333445544 78999999764 456678899999999
Q ss_pred eCCCCeeeeeeee---cCceEEE-----EEcCCCCEEEEEeCCCeEEEEEccccc-eeeee-cccceeeeeEEecCCCEE
Q 022716 95 DARSGKCSQQAEL---SGENINI-----TYKPDGTHIAVGNRDDELTILDVRKFK-PIHRR-KFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 95 d~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~ 164 (293)
|+.... ...+.. ...+..+ .+..+| ++.-..++.+.+..--... ..+.. ..........|.+..
T Consensus 107 ~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~--- 180 (410)
T PF04841_consen 107 DLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSW--- 180 (410)
T ss_pred eCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccccccccc---
Confidence 986433 111110 1111111 222244 3333445555544321111 00100 000000000000000
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~ 244 (293)
..+ ..++.+....+....++.+.+.+-..... + ....++..++.||+|+++|.-..+|.+.+.+..-.
T Consensus 181 ------~~i--~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 181 ------TVI--PLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ------ccc--eEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 001 12333444444444455566444332211 1 22458999999999999999999999998887666
Q ss_pred CEEEEEecC--CCcceeEECCCCC
Q 022716 245 RTVHQIPCR--AAMNSVEWNPKYN 266 (293)
Q Consensus 245 ~~~~~~~~~--~~i~~~~~sp~~~ 266 (293)
+.+..+... .+...+.|.-+..
T Consensus 249 ~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 249 EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ceeEEeecCcCCCCcEEEEECCCc
Confidence 655555433 4556666765443
No 341
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.00073 Score=60.94 Aligned_cols=151 Identities=14% Similarity=0.200 Sum_probs=106.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC
Q 022716 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD 191 (293)
Q Consensus 113 ~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d 191 (293)
.+.|+|.| .++.| ....+.+.|.++.+.++... +...+..+.|.|..-...+.+.. ...-.+|++.-.
T Consensus 20 A~Dw~~~G-LiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~---------~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPS---------SSQLLIASADIS 88 (1062)
T ss_pred ccccCccc-eEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCcc---------ccceeEEecccc
Confidence 56788876 34444 45688999999888877765 35678889998764322211110 123467888889
Q ss_pred CcEEEEeCCCCEEEEEeeccCCCeeEEEEccC---C-CEEEEecCCCcEEEEEcCCCCEEEEEecCC-CcceeEECC-CC
Q 022716 192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHT---G-DYIASASEDLFIDISNVHTGRTVHQIPCRA-AMNSVEWNP-KY 265 (293)
Q Consensus 192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-~i~~~~~sp-~~ 265 (293)
|.|.+||...+..+..+..+..++..++|-|. . ..|+.-..-.++-+|+..+|.+.-++.... ...++.+.| +.
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 99999999888878888888899999998763 3 356666777899999999999987776543 445577777 44
Q ss_pred CeEEEEEcC
Q 022716 266 NLLAYAGDD 274 (293)
Q Consensus 266 ~~la~~~~d 274 (293)
..+..-|..
T Consensus 169 rh~~~l~s~ 177 (1062)
T KOG1912|consen 169 RHFCVLGSK 177 (1062)
T ss_pred ceEEEEccC
Confidence 444444443
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00074 Score=61.57 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=77.2
Q ss_pred EEEEcCCCCCEEEEEeC----CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee
Q 022716 71 QLCWDPKHADLIATASG----DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR 146 (293)
Q Consensus 71 ~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~ 146 (293)
-.+|+|..+ +++.++. .|.|.|| .++|++......+-+..+++|+|..-.|+.|-.-|.+.+|.....+.
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~---- 93 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET---- 93 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee----
Confidence 346777543 4443332 5778777 45666555555556667899999988888888889999998654321
Q ss_pred cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC
Q 022716 147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 200 (293)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~ 200 (293)
......+..+++-+.|+++|..++++..-|.+.+|.+.
T Consensus 94 ----------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 ----------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ----------------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 12234556677888999999999999999999999875
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.60 E-value=0.0099 Score=40.94 Aligned_cols=100 Identities=22% Similarity=0.279 Sum_probs=63.8
Q ss_pred EEEEEECC---CC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 23 VHSVAWNC---TG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 23 v~~l~~s~---~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
|+++++.. || +.|+.||.|..||+|+-+. ... +. .-.+.|..+.-... ..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~--Ei-~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVA--EI-TETDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEE--EE-ecccceEEEEEcCC--CEEEEEecCCEEEEEeCcc
Confidence 55565543 44 5799999999999997542 222 22 22456777766543 5688899999999997532
Q ss_pred CeeeeeeeecCceEEEEEc-CC--C-CEEEEEeCCCeEE
Q 022716 99 GKCSQQAELSGENINITYK-PD--G-THIAVGNRDDELT 133 (293)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~-~~--~-~~l~~~~~d~~i~ 133 (293)
..-..+.+..++++++. .+ | ..|++|-++|.+-
T Consensus 73 --RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 --RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred --eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 23334445556676543 23 2 3688888888764
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.59 E-value=0.036 Score=47.14 Aligned_cols=254 Identities=13% Similarity=0.091 Sum_probs=110.3
Q ss_pred EECCCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716 27 AWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA 105 (293)
Q Consensus 27 ~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 105 (293)
+|.+||+.|+.++ .||.-.+|-++-.. ..+.++.-.... ......++|++. .++-......++-.|+++.+....+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t-~~i~QLTdg~g~-~~~g~~~s~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLAT-GEITQLTDGPGD-NTFGGFLSPDDR-ALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT--EEEE---SS-B--TTT-EE-TTSS-EEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEccc-CEEEECccCCCC-CccceEEecCCC-eEEEEECCCeEEEEECCcCcEEEEE
Confidence 5678997776544 47777776554221 233333221111 122334567654 4433445567777899888765555
Q ss_pred eecCceE-EEEE--cCCCCEEEEEeC----------------------CCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716 106 ELSGENI-NITY--KPDGTHIAVGNR----------------------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 106 ~~~~~~~-~~~~--~~~~~~l~~~~~----------------------d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
+....-. ...| ..|+..++-.-. ...|...|+++++......-..=+..+.++|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 5554433 2333 345555433211 11233345544433222111222345556665
Q ss_pred CCEEEEecCCCC-------E----------------------EEEEECCCCCEEEE-----ecCCCcEEEEeCCCCEEEE
Q 022716 161 GEMFFLTTGNAG-------C----------------------YCIAIDPMGRYFAV-----GSADSLVSLWDISEMLCVR 206 (293)
Q Consensus 161 ~~~~~~~~~~~~-------~----------------------~~~~~~~~~~~l~~-----gs~d~~i~iwd~~~~~~~~ 206 (293)
.+.+++-|++++ + .-=.|.|+|..+.- ++.+..|.-+|+.++....
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 554444443321 1 12246677765432 2234456666777664432
Q ss_pred EeeccCCCeeEEEEccCCCEEEEecCCC----------------cEEEEEcCCCCEEEEEec---------CC--Cccee
Q 022716 207 TFTKLEWPVRTISFSHTGDYIASASEDL----------------FIDISNVHTGRTVHQIPC---------RA--AMNSV 259 (293)
Q Consensus 207 ~~~~~~~~v~~l~~sp~~~~l~s~s~d~----------------~i~iw~~~~~~~~~~~~~---------~~--~i~~~ 259 (293)
+.... +....--++||+++|--+.|. .|++++++.++......+ .. .=...
T Consensus 279 -~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp 356 (386)
T PF14583_consen 279 -LMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHP 356 (386)
T ss_dssp -EEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----
T ss_pred -EEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCC
Confidence 22222 344555678999887655542 567788877654321111 11 12468
Q ss_pred EECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 260 EWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 260 ~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.|+||+++++..|+- +|.--||-+|-
T Consensus 357 ~FSPDgk~VlF~Sd~-------~G~~~vY~v~i 382 (386)
T PF14583_consen 357 SFSPDGKWVLFRSDM-------EGPPAVYLVEI 382 (386)
T ss_dssp EE-TTSSEEEEEE-T-------TSS-EEEEEE-
T ss_pred ccCCCCCEEEEECCC-------CCCccEEEEeC
Confidence 999999999999864 45667776663
No 345
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.0003 Score=54.37 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=85.6
Q ss_pred EEEEeCCCeEEEEeCCCCeee--ee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716 82 IATASGDKTVRLWDARSGKCS--QQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 82 l~s~~~d~~i~vwd~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~ 158 (293)
+..-+.|+.|+-++++..+.. .. +...+ ...-.-+..+++|+.+|.+.+|............
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~----------- 97 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV----------- 97 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc----eeecccCceEEeecccceEEEecCCccchHHHhh-----------
Confidence 334466777777766543211 11 11111 1111234679999999999999865322111110
Q ss_pred cCCCEEEEecCCCCEE-EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEe--cCCC
Q 022716 159 MTGEMFFLTTGNAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASA--SEDL 234 (293)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~--s~d~ 234 (293)
......+. -+....++.+..++..||.|+.|+++..+.+.....|. .++.....+..++.++++ |.|.
T Consensus 98 --------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~ 169 (238)
T KOG2444|consen 98 --------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDR 169 (238)
T ss_pred --------hcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccch
Confidence 00111111 12223345688999999999999999887776666666 577777777778888888 8888
Q ss_pred cEEEEEcCC
Q 022716 235 FIDISNVHT 243 (293)
Q Consensus 235 ~i~iw~~~~ 243 (293)
.++.|++..
T Consensus 170 ~~k~W~ve~ 178 (238)
T KOG2444|consen 170 VLKKWNVEK 178 (238)
T ss_pred hhhhcchhh
Confidence 888888864
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.36 E-value=0.07 Score=45.03 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=97.2
Q ss_pred CeEEEEeCCCC-----e--eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecC
Q 022716 89 KTVRLWDARSG-----K--CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 89 ~~i~vwd~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~ 160 (293)
|.+.++++... + .+...+..+.+.+++-- ++ .++++. .+++.++++...+ ......+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~----------- 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD----------- 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE------------
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-----------
Confidence 88999998874 2 23345567777777644 33 454444 5899999987765 22221111
Q ss_pred CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-CEEEEEeec--cCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716 161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFID 237 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~i~ 237 (293)
....+.++. ..++++++|+....+.++..+. ...+..+.. ....+.++.|-+++..++.+..+|.+.
T Consensus 128 --------~~~~i~sl~--~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 128 --------SPFYITSLS--VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp --------BSSSEEEEE--EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred --------ceEEEEEEe--ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 111233443 3467999999999999885432 333333333 234588888887777899999999998
Q ss_pred EEEcCC-------CC-EE---EEEecCCCccee---EECCC--CC------eEEEEEcCCCCC
Q 022716 238 ISNVHT-------GR-TV---HQIPCRAAMNSV---EWNPK--YN------LLAYAGDDKNKY 278 (293)
Q Consensus 238 iw~~~~-------~~-~~---~~~~~~~~i~~~---~~sp~--~~------~la~~~~d~~~~ 278 (293)
++.... +. .+ ..+.....|+++ ...|. .. .+..++.+|.+.
T Consensus 198 ~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 198 VLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp EEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred EEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence 887653 22 22 344556677777 55562 22 477787776554
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.0041 Score=54.02 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=89.6
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCC-------EEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFKPIHRRKFGYEVN 153 (293)
Q Consensus 81 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~ 153 (293)
+|.++.....++-.|+..|+.+..+.++..+.-+.+.|+.+ .-++|-.++.+.-||+|-... +
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~----------~ 417 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK----------N 417 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc----------c
Confidence 45556666677888999999988888777755566777654 345677888999999873211 1
Q ss_pred eeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCCEEEEecC
Q 022716 154 EIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGDYIASASE 232 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~ 232 (293)
-+.|....+.. ......|.+-. ...++|+||.+|.|++||- .+...++ +.+...+|..|..+.+|++++.-..
T Consensus 418 kl~~~q~kqy~----~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 418 KLAVVQSKQYS----TKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeeeeeccccc----cccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 12232221110 01112344433 4557899999999999996 5544443 5677889999999999998755433
No 348
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00068 Score=56.51 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=74.0
Q ss_pred EEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEE
Q 022716 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~ 272 (293)
++..+..++....-+..+...|..++|||..+ ++..++.+..|+|.|+++...+..+.....+.+++|.-+....++||
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 56666555555555556677899999999887 78899999999999999988888887788999999999998999998
Q ss_pred cCCCCCCCCcceEEEEeee
Q 022716 273 DDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 273 ~d~~~~~~~~~~~~~~~~~ 291 (293)
.. .|.+=||++-
T Consensus 255 l~-------nG~VlvyD~R 266 (463)
T KOG1645|consen 255 LQ-------NGMVLVYDMR 266 (463)
T ss_pred cc-------CceEEEEEcc
Confidence 75 3666777764
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.35 E-value=0.072 Score=44.96 Aligned_cols=194 Identities=14% Similarity=0.066 Sum_probs=103.2
Q ss_pred EEEEEECCC----CCeEEEEeC----------CCcEEEeecCCCCC--CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 23 VHSVAWNCT----GTKLASGSV----------DQTARVWHIEPHGH--GKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 23 v~~l~~s~~----~~~l~s~~~----------dg~v~iw~~~~~~~--~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
+..+.|..+ -.+|+.|.. .|.|.++++..... .....+.-....++|++++-. ++.+++ +
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~--~ 104 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVV--A 104 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEE--E
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEE--e
Confidence 344455543 356766643 28899999976311 122222233456789998765 233443 3
Q ss_pred CCCeEEEEeCCCCe-eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEE
Q 022716 87 GDKTVRLWDARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 87 ~d~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
.+..+.+|++...+ .......+...........+.++++|.....+.++..+.. ..+.. ++
T Consensus 105 ~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~---------va-------- 167 (321)
T PF03178_consen 105 VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLIL---------VA-------- 167 (321)
T ss_dssp ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEE---------EE--------
T ss_pred ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEE---------EE--------
Confidence 35889999998777 5554444443333333333568888887777777643321 10110 00
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-------CE-EEEEe--eccCCCeeEE---EEccC--C-----
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-------ML-CVRTF--TKLEWPVRTI---SFSHT--G----- 224 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~-------~~-~~~~~--~~~~~~v~~l---~~sp~--~----- 224 (293)
-......++++.+-++++.+++++.+|.+.++.... +. .+... ......|+++ ++.|. +
T Consensus 168 -~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~ 246 (321)
T PF03178_consen 168 -RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPN 246 (321)
T ss_dssp -EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTE
T ss_pred -ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccc
Confidence 011122355666665557999999999999997652 11 12211 1234567777 55552 2
Q ss_pred -CEEEEecCCCcEEE
Q 022716 225 -DYIASASEDLFIDI 238 (293)
Q Consensus 225 -~~l~s~s~d~~i~i 238 (293)
..++.++.+|.|..
T Consensus 247 ~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 247 RPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEEEEETTS-EEE
T ss_pred cceEEEEecCCEEEE
Confidence 24777788888763
No 350
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.33 E-value=0.054 Score=43.14 Aligned_cols=113 Identities=19% Similarity=0.089 Sum_probs=77.1
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeee
Q 022716 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI 155 (293)
Q Consensus 76 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v 155 (293)
++...+++.|+..+.+.--|.++|.............+-+.- -|.+++.|...+.+.+.+.++.........
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~------- 91 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI------- 91 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee-------
Confidence 334567788888888888888888766554444444332222 367899999999999999887654332111
Q ss_pred EEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee
Q 022716 156 AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 209 (293)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~ 209 (293)
...-. .....++++..+-.|+.|++.+..|.++..++.+.+
T Consensus 92 ------------~~~vk-~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 92 ------------LETVK-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ------------hhhhc-cceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 11111 123457889999999999999999999988887643
No 351
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.067 Score=43.45 Aligned_cols=202 Identities=16% Similarity=0.269 Sum_probs=108.4
Q ss_pred eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--ceEEEEEcCCCCEEEEEeCCCeEEEEEcccc
Q 022716 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKF 140 (293)
Q Consensus 63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~ 140 (293)
.+-...+.++.|+|+. +.|++..+.....|+-...|+.+..+...+ .+-.+.+.-++.++++--.+.++.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3445559999999985 456667777777787778888887776543 3346778778888877777888887765443
Q ss_pred ceeee-----ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE---EEEeec--
Q 022716 141 KPIHR-----RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFTK-- 210 (293)
Q Consensus 141 ~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~---~~~~~~-- 210 (293)
..... ..++...+ .+.+.--+|++|.+..|..+=+.+-+.||....... +.....
T Consensus 161 t~~~~~~~~~i~L~~~~k---------------~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 161 TTVISAKVQKIPLGTTNK---------------KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred ccEEeccceEEeccccCC---------------CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence 21111 00100000 011122345555555444444444455554432210 000000
Q ss_pred -----cCCCeeEEEEccC-CCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEEC-CCCCeEEEEEcCCCCCCCCc
Q 022716 211 -----LEWPVRTISFSHT-GDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWN-PKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 211 -----~~~~v~~l~~sp~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~s-p~~~~la~~~~d~~~~~~~~ 282 (293)
.-..|.++.|++. +.+|+-+.+++.+--.|. +|..+..+.....-+.+.-. |.-.-+| ..+++++|+..|
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGia-mDd~g~lYIvSE 302 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIA-MDDDGNLYIVSE 302 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeE-ECCCCCEEEEec
Confidence 1235777888864 566777778887777766 34445444433333333222 2222222 335566666554
No 352
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.25 E-value=0.0029 Score=54.13 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=56.7
Q ss_pred CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC----------------
Q 022716 191 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA---------------- 254 (293)
Q Consensus 191 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~---------------- 254 (293)
.+.+.+||+++++... +......+....|||+|+.+|-.. ++.|++.+..++.. .++...+
T Consensus 22 ~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~-~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE-TQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE-EESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe-EEeccccceeEEcCccceecccc
Confidence 3568899999986543 333356789999999999998875 46799998877743 3332211
Q ss_pred ---CcceeEECCCCCeEEEEEcCC
Q 022716 255 ---AMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 255 ---~i~~~~~sp~~~~la~~~~d~ 275 (293)
.-..+-||||+.+||+...|.
T Consensus 99 v~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp TSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred ccccccceEECCCCCEEEEEEECC
Confidence 225688999999999998764
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0022 Score=56.63 Aligned_cols=90 Identities=23% Similarity=0.424 Sum_probs=66.1
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc-eE-EEEEcCCCCEEEEEeCCCeEEEEEccccceee
Q 022716 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144 (293)
Q Consensus 67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~ 144 (293)
..|..+.|+|. -++++.+.++|.+.+..+. .+.+..+..++. +. +++|.|||+.+++|-.||+|++.|..++..+.
T Consensus 21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 34778899997 4799999999988887766 444455553333 33 79999999999999999999999998877666
Q ss_pred e--ecccceeeeeEEe
Q 022716 145 R--RKFGYEVNEIAWN 158 (293)
Q Consensus 145 ~--~~~~~~~~~v~~~ 158 (293)
. .....++..+-|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 5 2233344444454
No 354
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.24 E-value=0.032 Score=38.49 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=45.8
Q ss_pred cCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 022716 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137 (293)
Q Consensus 75 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~ 137 (293)
..++.+.|+.|+.|..||+|+- .+.+..+...+.++++..... ..++.+...|+|-+|+-
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 3344567889999999999974 356666666777777776555 57999999999999984
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.21 E-value=0.0001 Score=64.74 Aligned_cols=197 Identities=18% Similarity=0.209 Sum_probs=114.9
Q ss_pred CeeEEEEcCC-CCCEEEEEeCCCeEEEEeCCCCeeeee---eeecCceEEEEEcCC-CCEEEEEe----CCCeEEEEEcc
Q 022716 68 SVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQ---AELSGENINITYKPD-GTHIAVGN----RDDELTILDVR 138 (293)
Q Consensus 68 ~i~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l~~~~----~d~~i~l~d~~ 138 (293)
.+.++++.-. +.-+++.|..+|.|.+-..+...-... -.......+++|.+- ...|++|- .|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3445544322 224677778889998887765432211 112234556888764 44555553 35678999998
Q ss_pred cc--ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716 139 KF--KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR 216 (293)
Q Consensus 139 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~ 216 (293)
+. .|.....+. ++...+..++++..+.+.+.+|.....+.++|++....... .-....+.
T Consensus 138 s~ltvPke~~~fs-----------------~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnTk~vq 199 (783)
T KOG1008|consen 138 SLLTVPKESPLFS-----------------SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNTKYVQ 199 (783)
T ss_pred cccCCCccccccc-----------------cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhhhhcc
Confidence 75 333222211 11122233667778889999999999999999985422111 11223566
Q ss_pred EEEEcc-CCCEEEEecCCCcEEEEEc-CCCCE-EEEEec-C----CCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEE
Q 022716 217 TISFSH-TGDYIASASEDLFIDISNV-HTGRT-VHQIPC-R----AAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRI 287 (293)
Q Consensus 217 ~l~~sp-~~~~l~s~s~d~~i~iw~~-~~~~~-~~~~~~-~----~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~ 287 (293)
.+...| .+.|+++-. |+.|.+||. ..-+. +..+.. . ..+..++|.|.- .++|+...| .+++|.
T Consensus 200 G~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd-------S~tIrl 271 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD-------SITIRL 271 (783)
T ss_pred cceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC-------cceEEE
Confidence 677788 677887766 999999994 22221 111111 1 137889999965 456666544 355555
Q ss_pred Eee
Q 022716 288 YGF 290 (293)
Q Consensus 288 ~~~ 290 (293)
|.+
T Consensus 272 ydi 274 (783)
T KOG1008|consen 272 YDI 274 (783)
T ss_pred ecc
Confidence 543
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.016 Score=52.05 Aligned_cols=129 Identities=11% Similarity=0.150 Sum_probs=86.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA 156 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~ 156 (293)
.++++-|+.-|.+.+|+-..+.....-. .++....+..+++..+++.|+..|.|.++.++...+......
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~-------- 116 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV-------- 116 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee--------
Confidence 4688889999999999876654332222 233344566788888999999999999998776433221110
Q ss_pred EecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC----CEEEEEeeccCCCeeEEEEc
Q 022716 157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----MLCVRTFTKLEWPVRTISFS 221 (293)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~----~~~~~~~~~~~~~v~~l~~s 221 (293)
.+. -..+...++|++|++++..+.+|...|+|.+-.+.. ....+.+...+..|-.+++.
T Consensus 117 -t~~-----d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 117 -TPC-----DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred -ccc-----cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 000 011455789999999999999999999999987765 11223444556677777663
No 357
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.0016 Score=58.18 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=74.9
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE---EEE
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV---HQI 250 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~---~~~ 250 (293)
--+++..+.+++.|++-|.+++|+-..+.... ...+-...+..++.|++..++|.|+..|.|.++-+..+... ..-
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 34556778999999999999999976654332 22223456777888999999999999999999988764322 111
Q ss_pred ----ecCCCcceeEECCCCCeEEEEEcCC
Q 022716 251 ----PCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 251 ----~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.+...|++++|++++..+-+|...|
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~G 146 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQG 146 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCc
Confidence 1356799999999999998887654
No 358
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.08 E-value=0.21 Score=44.92 Aligned_cols=237 Identities=14% Similarity=0.098 Sum_probs=117.0
Q ss_pred CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC---ee-EEEEcCCCCCEEEEEe---------CCCeEEEEeCCCC
Q 022716 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS---VD-QLCWDPKHADLIATAS---------GDKTVRLWDARSG 99 (293)
Q Consensus 33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~---i~-~~~~~~~~~~~l~s~~---------~d~~i~vwd~~~~ 99 (293)
..++.++.||.|..+|.++.. .........+... +. ...+. + .+++.++ .++.+.-.|..++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~--~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGK--QVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEecCCCeEEEEECCCCC--EeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCC
Confidence 567778888999988876431 2222222221000 11 11111 1 3444443 3678888899999
Q ss_pred eeeeeeeecCc-e---------------------EEEEEcCCCCEEEEEeCCC------------------eEEEEEccc
Q 022716 100 KCSQQAELSGE-N---------------------INITYKPDGTHIAVGNRDD------------------ELTILDVRK 139 (293)
Q Consensus 100 ~~~~~~~~~~~-~---------------------~~~~~~~~~~~l~~~~~d~------------------~i~l~d~~~ 139 (293)
+.+-..+.... . ...++.+.+..++.++.++ .+.-+|+++
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 87665543211 0 0234455566777777665 577777766
Q ss_pred cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE-CCCCC---EEEEecCCCcEEEEeCCCCEEEEEeeccCCCe
Q 022716 140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI-DPMGR---YFAVGSADSLVSLWDISEMLCVRTFTKLEWPV 215 (293)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v 215 (293)
.+..-....... -.|+ ......++. ... .-++. .++.++.+|.+...|.++++.+=..... .
T Consensus 266 G~~~W~~~~~~~---~~~~-------~~~~s~p~~-~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~ 331 (488)
T cd00216 266 GKVKWFYQTTPH---DLWD-------YDGPNQPSL-ADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---E 331 (488)
T ss_pred CCEEEEeeCCCC---CCcc-------cccCCCCeE-EeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---c
Confidence 554322211000 0000 000000000 000 11232 6788889999999999999876543211 1
Q ss_pred eEEEEccCCCEEEEe------------------cCCCcEEEEEcCCCCEEEEEecC---------CCcceeEECCCCCeE
Q 022716 216 RTISFSHTGDYIASA------------------SEDLFIDISNVHTGRTVHQIPCR---------AAMNSVEWNPKYNLL 268 (293)
Q Consensus 216 ~~l~~sp~~~~l~s~------------------s~d~~i~iw~~~~~~~~~~~~~~---------~~i~~~~~sp~~~~l 268 (293)
..++.+| ..+..+ ..++.+.-.|..+|+.+-+.... .+...-.-...+..+
T Consensus 332 ~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v 409 (488)
T cd00216 332 QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV 409 (488)
T ss_pred cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE
Confidence 1233334 222221 23577888888888876555432 111100011244567
Q ss_pred EEEEcCCCCCCCCcceE-EEEee
Q 022716 269 AYAGDDKNKYQADEGVF-RIYGF 290 (293)
Q Consensus 269 a~~~~d~~~~~~~~~~~-~~~~~ 290 (293)
..++.|+.++-.+..+- .+|.+
T Consensus 410 ~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 410 FAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred EEECCCCeEEEEECCCCceeeEE
Confidence 77777766665444332 34443
No 359
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.05 E-value=0.15 Score=42.76 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=43.5
Q ss_pred cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEe-cCCCcEEEEEcCCCCEEEEEec
Q 022716 193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASA-SEDLFIDISNVHTGRTVHQIPC 252 (293)
Q Consensus 193 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~-s~d~~i~iw~~~~~~~~~~~~~ 252 (293)
.|.++|+++++++..+.- +.++.+|..+.+.+ +|++. ..++.+.++|..+|+.++.+..
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 577789999998887742 34688999998765 55444 5689999999999999988764
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.04 E-value=0.15 Score=44.58 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=84.7
Q ss_pred eEEEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 90 TVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
.|++|+.. |+.+..+... +..+.+.|+.+ ..|++...||.++++|+.... ....+.++.... .
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~-----------v 125 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEK-----------V 125 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccC-----------c
Confidence 47777653 3444444432 66788999875 566677799999999986433 222222221100 0
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeC-CCCEEEEEe---ec-------cCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDI-SEMLCVRTF---TK-------LEWPVRTISFSHTGDYIASASEDLFID 237 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~-~~~~~~~~~---~~-------~~~~v~~l~~sp~~~~l~s~s~d~~i~ 237 (293)
.+..+....+..+|-.++ +.++.+.+.+- ......+.+ .. +........++.+....+....+..+.
T Consensus 126 ~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~ 203 (410)
T PF04841_consen 126 LECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIY 203 (410)
T ss_pred ccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEE
Confidence 000111111112232222 22333333321 111010111 00 000000123444555555555555555
Q ss_pred EEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 238 ISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 238 iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
+-+-...+ ++...+++..++.||+++++|.-..++++|+...
T Consensus 204 ~i~~~~~~---~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 204 IIDENSFK---QIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred EEEccccc---cccCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 44333221 1334568999999999999999999988887554
No 361
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.01 E-value=0.12 Score=47.19 Aligned_cols=231 Identities=16% Similarity=0.165 Sum_probs=113.2
Q ss_pred CCCCCeEEEEeCCC------cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC------CeEEEEeC
Q 022716 29 NCTGTKLASGSVDQ------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWDA 96 (293)
Q Consensus 29 s~~~~~l~s~~~dg------~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d------~~i~vwd~ 96 (293)
+..+..++.||.++ .++.+|...+..... ..++ +...-.+++... +.++++||.| ..+-.||.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~--a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL--APMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeec--CCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEecC
Confidence 34456677888874 667777654321111 1111 122223334432 3678888888 34667787
Q ss_pred CCCeeeeeeeecCceEEEE-EcCCCCEEEEEeCCCe-----EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 97 RSGKCSQQAELSGENINIT-YKPDGTHIAVGNRDDE-----LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~-----i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
+..+..........-.... ..-+|...++|+.||. +-.||.++.+ |.+-..+...
T Consensus 357 ~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~---------------W~~va~m~~~---- 417 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK---------------WTPVAPMLTR---- 417 (571)
T ss_pred CCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc---------------ccccCCCCcc----
Confidence 7766433222221111111 1235778889988864 3445544332 2222111110
Q ss_pred CCEEEEEECCCCCEEEEecCCC------cEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCCEEEEecCCCc-----EE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADS------LVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLF-----ID 237 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~------~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-----i~ 237 (293)
....-...-++.+.++|+.++ ++..||..+..- +..+..-..... ++ .-++...+.|+.|+. |.
T Consensus 418 -r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE 494 (571)
T KOG4441|consen 418 -RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVE 494 (571)
T ss_pred -eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEE
Confidence 000111223677788887554 567788765432 222222221111 22 236777788887763 67
Q ss_pred EEEcCCCCEEEEEecCCCcceeEEC-CCCCeEEEEEcCCCCCCCCcceEEEEe
Q 022716 238 ISNVHTGRTVHQIPCRAAMNSVEWN-PKYNLLAYAGDDKNKYQADEGVFRIYG 289 (293)
Q Consensus 238 iw~~~~~~~~~~~~~~~~i~~~~~s-p~~~~la~~~~d~~~~~~~~~~~~~~~ 289 (293)
.+|..+.+-...-+...+...+... -++..++.||.|++.+ ..++..|+
T Consensus 495 ~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~---l~~ve~yd 544 (571)
T KOG4441|consen 495 RYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNN---LNTVECYD 544 (571)
T ss_pred EEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccc---cceeEEcC
Confidence 7888775533221111122222222 2567889999887555 23444444
No 362
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.0039 Score=57.11 Aligned_cols=108 Identities=13% Similarity=0.176 Sum_probs=81.3
Q ss_pred EEEEcCCCCEEEEEe----CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe
Q 022716 113 NITYKPDGTHIAVGN----RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188 (293)
Q Consensus 113 ~~~~~~~~~~l~~~~----~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 188 (293)
-..|+|....+++++ ..|.+.++- .+++|.+....+ .+..+++|||..-.|+.|
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P---------------------~hatSLCWHpe~~vLa~g 77 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP---------------------VHATSLCWHPEEFVLAQG 77 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc---------------------eehhhhccChHHHHHhhc
Confidence 356777777777765 456777763 233333322222 123467888988888999
Q ss_pred cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 189 SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 189 s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
=.-|.+.+|.....+.......|..+|..+.|||+|..|+|+..-|.+.+|...
T Consensus 78 we~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 889999999988877666677899999999999999999999999999999765
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.87 E-value=0.18 Score=40.72 Aligned_cols=205 Identities=13% Similarity=0.164 Sum_probs=100.5
Q ss_pred eeecCccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
+.+.+-...+..|+|+|+.+.| +.....+.|...+.+ + .....+.+.+.. -.-.+++... ..++++--.++.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G-~vlr~i~l~g~~-D~EgI~y~g~-~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--G-KVLRRIPLDGFG-DYEGITYLGN-GRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-S-SEEEEEE-ST-TEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--C-CEEEEEeCCCCC-CceeEEEECC-CEEEEEEcCCCcEE
Confidence 4555666779999999987655 455556776666653 1 234445555532 3456676543 34554443488888
Q ss_pred EEeCCCCe----e--eeeeee--c----CceEEEEEcCCCCEEEEEeCCCeEEEEEccccc---eeeeecccceeeeeEE
Q 022716 93 LWDARSGK----C--SQQAEL--S----GENINITYKPDGTHIAVGNRDDELTILDVRKFK---PIHRRKFGYEVNEIAW 157 (293)
Q Consensus 93 vwd~~~~~----~--~~~~~~--~----~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~---~~~~~~~~~~~~~v~~ 157 (293)
+.++.... . ...+.. . ...-.++|.|.++.|+++-+..-..++.++... ....... ..|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~------~~~ 163 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD------QDL 163 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-------HHH
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc------ccc
Confidence 88873321 1 111221 1 124579999988888877766666666654311 1100000 000
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEee--c--c-----CCCeeEEEEccCCCEE
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFT--K--L-----EWPVRTISFSHTGDYI 227 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~--~--~-----~~~v~~l~~sp~~~~l 227 (293)
.. .......+..++++|.. .+++.......|..+| .+++.+..+. . | -.....|+|.++|+..
T Consensus 164 ~~------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 164 DD------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp H-------HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cc------ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 00 00011234577888874 5667777778888899 5665544332 2 1 1257889999998644
Q ss_pred EEecCCCcEE
Q 022716 228 ASASEDLFID 237 (293)
Q Consensus 228 ~s~s~d~~i~ 237 (293)
++ |+-+..+
T Consensus 237 Iv-sEpNlfy 245 (248)
T PF06977_consen 237 IV-SEPNLFY 245 (248)
T ss_dssp EE-ETTTEEE
T ss_pred EE-cCCceEE
Confidence 44 4444333
No 364
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.82 E-value=0.0038 Score=48.41 Aligned_cols=105 Identities=15% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeE-EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce
Q 022716 181 MGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRT-ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS 258 (293)
Q Consensus 181 ~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~-l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~ 258 (293)
-+.-+++|+.+|.|.+|+....-.+.. +..-...|.+ +.--.++.+..+++.|+.|+.|+++.++.+....++.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~---- 144 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN---- 144 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc----
Confidence 356789999999999998752211110 1111122222 2222345578899999999999999888765443322
Q ss_pred eEECCCCCeEEEEEcCCCCCCCCc---ceEEEEeeec
Q 022716 259 VEWNPKYNLLAYAGDDKNKYQADE---GVFRIYGFEN 292 (293)
Q Consensus 259 ~~~sp~~~~la~~~~d~~~~~~~~---~~~~~~~~~~ 292 (293)
| -++..+++.+.|+++.+++. -++|.|++|.
T Consensus 145 --~-~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 145 --F-ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred --C-CCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 1 23566666677777777733 4568888874
No 365
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.80 E-value=0.2 Score=40.43 Aligned_cols=179 Identities=17% Similarity=0.170 Sum_probs=110.2
Q ss_pred eeEEEEcCCCCCEEEEEeCCC--eEEEEeCCCCeeeeeeeecCceE--EEEEcCCCCEEEEEeCCCeEEEEEccccceee
Q 022716 69 VDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENI--NITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144 (293)
Q Consensus 69 i~~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~ 144 (293)
...+.|..+ +.++-|.+.-| .|+.+|+.+++......+..... .++... ++.....-.++...+||.++.+.+.
T Consensus 47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEE
Confidence 445666333 45667777655 68899999998777666655432 344443 3444444568899999999888776
Q ss_pred eecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEEE
Q 022716 145 RRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTIS 219 (293)
Q Consensus 145 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~ 219 (293)
+..+..+-+ -++ .++..|+..+....|+.+|.++++..+.+.-.. ..++.+.
T Consensus 125 ~~~y~~EGW---------------------GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 125 TFPYPGEGW---------------------GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp EEE-SSS-----------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred EEecCCcce---------------------EEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 654432221 122 356667777777889999998887666654322 2466777
Q ss_pred EccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC----------------CCcceeEECCCCCeEEEEEc
Q 022716 220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR----------------AAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 220 ~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~----------------~~i~~~~~sp~~~~la~~~~ 273 (293)
+- +|...|=.=....|..-|..+|+.+..+... .=.|.|+|.|+.+.|..+|.
T Consensus 182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 74 6665555556667788899999987665311 12578999998877777764
No 366
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.71 E-value=0.0065 Score=34.98 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=28.5
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIE 50 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~ 50 (293)
...|.+++|+|..+.||.|..||.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999874
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.70 E-value=0.14 Score=46.95 Aligned_cols=147 Identities=10% Similarity=0.152 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCEEEEEe------CCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716 111 NINITYKPDGTHIAVGN------RDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG 182 (293)
Q Consensus 111 ~~~~~~~~~~~~l~~~~------~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (293)
+...+++|+|+.++... .|. .+.+.+... .. .....+.......|++++..+.+......+ .
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~---~----- 421 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTV---V----- 421 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECCCCCceEEEecCcce---E-----
Confidence 45678999999887665 233 344444321 11 111112223445555554433332211110 0
Q ss_pred CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEE---EEcCCCCE-E---EEEe--cC
Q 022716 183 RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI---SNVHTGRT-V---HQIP--CR 253 (293)
Q Consensus 183 ~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~i---w~~~~~~~-~---~~~~--~~ 253 (293)
++......+.+.+.+++.++... .....|.++.|||||..+|.-. ++.|++ -....|.. + ..+. ..
T Consensus 422 -~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~ 496 (591)
T PRK13616 422 -RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG 496 (591)
T ss_pred -EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC
Confidence 01111223445555655543322 3356799999999999887655 467776 33334431 1 1222 22
Q ss_pred CCcceeEECCCCCeEEEEEc
Q 022716 254 AAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 254 ~~i~~~~~sp~~~~la~~~~ 273 (293)
....++.|.+++.++ .+..
T Consensus 497 ~~~~~l~W~~~~~L~-V~~~ 515 (591)
T PRK13616 497 DTAVSLDWRTGDSLV-VGRS 515 (591)
T ss_pred CccccceEecCCEEE-EEec
Confidence 335789999998855 4443
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.34 Score=40.48 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=67.2
Q ss_pred EEEEECCCCCEEEEe-cCCCcEEEEeCCC--C----EE-EEEeeccCCCeeEEEEccCCCEEEEecCCC-cEEEEEcCCC
Q 022716 174 YCIAIDPMGRYFAVG-SADSLVSLWDISE--M----LC-VRTFTKLEWPVRTISFSHTGDYIASASEDL-FIDISNVHTG 244 (293)
Q Consensus 174 ~~~~~~~~~~~l~~g-s~d~~i~iwd~~~--~----~~-~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~-~i~iw~~~~~ 244 (293)
..|+|+|+++.|... +..+.|.-|++.. + .. ...+.........++...+|.+.+++-.++ .|.+++.. |
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence 358999999776655 4458888887752 1 11 111222334556677777888776555554 89999998 8
Q ss_pred CEEEEEecC-CCcceeEE-CCCCCeEEEEEcCC
Q 022716 245 RTVHQIPCR-AAMNSVEW-NPKYNLLAYAGDDK 275 (293)
Q Consensus 245 ~~~~~~~~~-~~i~~~~~-sp~~~~la~~~~d~ 275 (293)
+++..+..- ..+.+++| .|+.+.|..++...
T Consensus 245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 888776554 66888888 56777766666554
No 369
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.57 E-value=0.0094 Score=34.31 Aligned_cols=34 Identities=26% Similarity=0.195 Sum_probs=29.7
Q ss_pred cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716 211 LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 211 ~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~ 245 (293)
...+|..++|+|...++|.|+.||.|.++.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3457999999999999999999999999988 443
No 370
>PHA02713 hypothetical protein; Provisional
Probab=96.54 E-value=0.11 Score=47.44 Aligned_cols=63 Identities=13% Similarity=0.043 Sum_probs=37.5
Q ss_pred CCCEEEEecCC------CcEEEEeCCC---CEEEEEeeccCCCeeEEEEccCCCEEEEecCCC--cEEEEEcCCCC
Q 022716 181 MGRYFAVGSAD------SLVSLWDISE---MLCVRTFTKLEWPVRTISFSHTGDYIASASEDL--FIDISNVHTGR 245 (293)
Q Consensus 181 ~~~~l~~gs~d------~~i~iwd~~~---~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~--~i~iw~~~~~~ 245 (293)
++++.+.|+.+ ..+..||..+ +..+..+.........+.+ +|+..++|+.|+ .+..||+.+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 46777777654 2467898775 3444333333333333333 778888998887 56677766544
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.53 E-value=0.52 Score=44.40 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=75.7
Q ss_pred CCCcEEEeecCCCCCCceeEEEeeCCcCC-eeEEEEcCC----CCCEEEEEeCCCeEEEEeCCCCe--eee----eeeec
Q 022716 40 VDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPK----HADLIATASGDKTVRLWDARSGK--CSQ----QAELS 108 (293)
Q Consensus 40 ~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~----~~~~l~s~~~d~~i~vwd~~~~~--~~~----~~~~~ 108 (293)
....|.-.|++.+ .+. -.+..|... |..++-... ....-+.|-.+..+..||.+-.. ++. .+...
T Consensus 502 ~~~~ly~mDLe~G---KVV-~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 502 NPNKLYKMDLERG---KVV-EEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred CCCceEEEecCCC---cEE-EEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence 3456666666542 211 234444433 554432110 12234467778889999987542 221 11223
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe
Q 022716 109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 188 (293)
....+++.+.+| ++|+|+.+|.|+|||--..+ -+. .+-+-..+|..|+++.||+++++.
T Consensus 578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~-AKT-------------------~lp~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR-AKT-------------------ALPGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred CCceEEEecCCc-eEEEEeCCCcEEeecccchh-hhh-------------------cCCCCCCCeeEEEecCCCcEEEEe
Confidence 344566766666 79999999999999932211 000 111224567788888889887655
Q ss_pred cCCCcEEEEeC
Q 022716 189 SADSLVSLWDI 199 (293)
Q Consensus 189 s~d~~i~iwd~ 199 (293)
+ +..|.|+++
T Consensus 637 c-~tyLlLi~t 646 (794)
T PF08553_consen 637 C-KTYLLLIDT 646 (794)
T ss_pred e-cceEEEEEE
Confidence 4 556777764
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.4 Score=40.07 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=62.2
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec
Q 022716 112 INITYKPDGTHIAVGNR-DDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS 189 (293)
Q Consensus 112 ~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs 189 (293)
..++|+||++.|..... .+.+.-+++... -... . ....+......+..--++++.+|.+.+++-
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~-----~---------~~~~~~~~~~~G~PDG~~vDadG~lw~~a~ 231 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG-----G---------RRGFVDFDEEPGLPDGMAVDADGNLWVAAV 231 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccC-----C---------cceEEEccCCCCCCCceEEeCCCCEEEecc
Confidence 46999999988777665 477777776420 0000 0 000111212222333456678888886555
Q ss_pred CCC-cEEEEeCCCCEEEEEeeccCCCeeEEEEc-cCCCEE
Q 022716 190 ADS-LVSLWDISEMLCVRTFTKLEWPVRTISFS-HTGDYI 227 (293)
Q Consensus 190 ~d~-~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l 227 (293)
.+| .|..|+.. ++.+..+.-....+++++|- |+.+.|
T Consensus 232 ~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 232 WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred cCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEE
Confidence 554 89999988 88888777666778888885 444444
No 373
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.43 E-value=0.41 Score=41.25 Aligned_cols=58 Identities=5% Similarity=-0.023 Sum_probs=34.6
Q ss_pred CeeEEEEccCCCEEEEecCC-------------------CcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEE
Q 022716 214 PVRTISFSHTGDYIASASED-------------------LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d-------------------~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~ 272 (293)
....++|.|||.+.++-+.. +.|.-++..+++ +..+.. ......++|+|+|+++++-.
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence 47789999999865554421 334444444333 223322 22345799999998877644
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.35 E-value=0.45 Score=39.02 Aligned_cols=121 Identities=16% Similarity=0.159 Sum_probs=67.8
Q ss_pred CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee-----
Q 022716 30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ----- 104 (293)
Q Consensus 30 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~----- 104 (293)
..++.|+.|..+| +.++++... ..... . .+...|..+...|+- +.++.- .|+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~-~~~~~---i-~~~~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP-SKPTR---I-LKLSSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC-cccee---E-eecceEEEEEEeccc-CEEEEE-cCCccEEEEchhhcccccccccc
Confidence 3578899998888 888888211 11111 1 123348888888764 344433 359999999764432221
Q ss_pred ----------eeecCceEEEE--EcCCCCEEEEEeCCCeEEEEEccc----c-ceeeeecccceeeeeEEe
Q 022716 105 ----------AELSGENINIT--YKPDGTHIAVGNRDDELTILDVRK----F-KPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 105 ----------~~~~~~~~~~~--~~~~~~~l~~~~~d~~i~l~d~~~----~-~~~~~~~~~~~~~~v~~~ 158 (293)
......+...+ -.+.+...++.....++.+|.... + ...++...+..+..+.|.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~ 147 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL 147 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe
Confidence 11111122222 123333444444456888887654 2 455556667777777776
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.33 E-value=0.5 Score=43.36 Aligned_cols=181 Identities=10% Similarity=0.054 Sum_probs=83.5
Q ss_pred CCeeEEEEcCCCCCEEEEEe-----CCC--eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeE-EEEEcc
Q 022716 67 DSVDQLCWDPKHADLIATAS-----GDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL-TILDVR 138 (293)
Q Consensus 67 ~~i~~~~~~~~~~~~l~s~~-----~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i-~l~d~~ 138 (293)
..+...+.+|++....+... .|. .+.+++... .. ..+........-.|+|+|+.+++......+ .+.+-.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 35677788998665554442 243 344445422 22 222222234567899998888777533222 222111
Q ss_pred ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEE---EeCCCCEE-E---EEe-ec
Q 022716 139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSL---WDISEMLC-V---RTF-TK 210 (293)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~i---wd~~~~~~-~---~~~-~~ 210 (293)
....+.... -+ .++.. . .....+..+.++|||..++.-. ++.|.+ -....+.. + ..+ ..
T Consensus 428 ~~gql~~~~---------vd-~ge~~-~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 428 ATGQLARTP---------VD-ASAVA-S-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred CCceEEEEe---------cc-Cchhh-h-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 100000000 00 00000 0 1123455666677776655544 355655 33334431 1 112 22
Q ss_pred cCCCeeEEEEccCCCEEEEecCCCcEEEEEcC-CCCEEEEEec---CCCcceeEECC
Q 022716 211 LEWPVRTISFSHTGDYIASASEDLFIDISNVH-TGRTVHQIPC---RAAMNSVEWNP 263 (293)
Q Consensus 211 ~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~---~~~i~~~~~sp 263 (293)
....+.++.|.+++.++ .+..++...+|-+. .|.....++. ..++.+|+=+|
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 33446889999999855 44444444445433 2322222232 33556666666
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.014 Score=54.98 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=65.8
Q ss_pred CCCEEEEecCCCcEEEEeCCCCEE-EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcce
Q 022716 181 MGRYFAVGSADSLVSLWDISEMLC-VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNS 258 (293)
Q Consensus 181 ~~~~l~~gs~d~~i~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~ 258 (293)
.+..++.|++.|.+-..|...... ...-.....+|++++|+.+|+.++.|-.+|.|.+||.+.++.++.+.. ..|...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 355788999999999998765322 122223457999999999999999999999999999999888776643 334444
Q ss_pred e---EECCCCCeEEEEEc
Q 022716 259 V---EWNPKYNLLAYAGD 273 (293)
Q Consensus 259 ~---~~sp~~~~la~~~~ 273 (293)
+ .|..++..+.++..
T Consensus 178 vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred EEEEEEeCCCcEEEEccC
Confidence 3 44444444444433
No 377
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.30 E-value=0.17 Score=43.95 Aligned_cols=131 Identities=12% Similarity=0.138 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccccceee--eec-----------c---cceeeeeE--EecC-----CCEEEEe
Q 022716 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIH--RRK-----------F---GYEVNEIA--WNMT-----GEMFFLT 167 (293)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~--~~~-----------~---~~~~~~v~--~~~~-----~~~~~~~ 167 (293)
+..+.+.++...|+++...|.+.+|.....+... ... + ...+.++. ..+. .+..++.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 4578888998999999999999998764432221 000 0 01111111 0011 0234445
Q ss_pred cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe--ec------cCCCeeEEEEcc-----CC---CEEEEec
Q 022716 168 TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF--TK------LEWPVRTISFSH-----TG---DYIASAS 231 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~--~~------~~~~v~~l~~sp-----~~---~~l~s~s 231 (293)
...+.+++++.+ +-.++|+|..+|.+.|.|++....+..- .. ....++++.|+. |+ -.|.+|.
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 557889999985 7779999999999999999887766542 22 123588888873 22 4788888
Q ss_pred CCCcEEEEEcC
Q 022716 232 EDLFIDISNVH 242 (293)
Q Consensus 232 ~d~~i~iw~~~ 242 (293)
..|.+.++.+.
T Consensus 163 n~G~v~~fkIl 173 (395)
T PF08596_consen 163 NSGNVLTFKIL 173 (395)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 88999998765
No 378
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.14 E-value=0.4 Score=44.96 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccc-cceeeeecccc-eeeeeEEecCCCEEEEecCCCCEEEEEECCC---CCEE
Q 022716 111 NINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRRKFGY-EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYF 185 (293)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l 185 (293)
+..+..+|+|++++..+..+ +.+..+.. .........+. .+. +.-.+-++.++.......+..+.|||. +.+|
T Consensus 87 v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~-Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 87 VHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEIN-CRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred EEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCccee-EEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 34577899999999988755 44555432 11111111111 111 111222334444455567888999987 5899
Q ss_pred EEecCCCcEEEEeCCC
Q 022716 186 AVGSADSLVSLWDISE 201 (293)
Q Consensus 186 ~~gs~d~~i~iwd~~~ 201 (293)
++=++|+++++||+.+
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 9999999999999865
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.97 E-value=1 Score=39.52 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=81.9
Q ss_pred eeEEEEcCCCCCEEEEEeCCCe----EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC-----------eEE
Q 022716 69 VDQLCWDPKHADLIATASGDKT----VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-----------ELT 133 (293)
Q Consensus 69 i~~~~~~~~~~~~l~s~~~d~~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~ 133 (293)
+....++|++..++++.+..|. +++.|+.+++.+...........+.|.++++.++....+. .+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3456788887656666555554 9999999997654321112222399999998887776433 244
Q ss_pred EEEccccceeeeecccceeeeeEEecCCCEEEEecCCC-C-EEEEEECCCCCEEEEecC---C-CcEEEEeCCCC----E
Q 022716 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA-G-CYCIAIDPMGRYFAVGSA---D-SLVSLWDISEM----L 203 (293)
Q Consensus 134 l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~gs~---d-~~i~iwd~~~~----~ 203 (293)
.|.+.+.... ..+++..... . ...+..++++++++.... + ..+.+.|+... .
T Consensus 206 ~~~~gt~~~~------------------d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~ 267 (414)
T PF02897_consen 206 RHKLGTPQSE------------------DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA 267 (414)
T ss_dssp EEETTS-GGG-------------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-
T ss_pred EEECCCChHh------------------CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC
Confidence 4444332211 1122222221 2 456778899988765332 2 35777888763 2
Q ss_pred EEEEeeccCCCeeEEEEccCCCEEEEe---cCCCcEEEEEcCCCC
Q 022716 204 CVRTFTKLEWPVRTISFSHTGDYIASA---SEDLFIDISNVHTGR 245 (293)
Q Consensus 204 ~~~~~~~~~~~v~~l~~sp~~~~l~s~---s~d~~i~iw~~~~~~ 245 (293)
....+......+....-+..+.+++.. +..+.|.-.++....
T Consensus 268 ~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 268 KPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred CcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 233333333333333222344333332 223455556666554
No 380
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.78 E-value=0.87 Score=41.78 Aligned_cols=104 Identities=13% Similarity=0.186 Sum_probs=63.4
Q ss_pred eCCCeEEEEeCCCCeeeeeeee--cCceEEEEE--cCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716 86 SGDKTVRLWDARSGKCSQQAEL--SGENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~--~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (293)
+....+.|||.+.+.......+ .+.+..+.| .|++..+++.+-.+.|.++--....-.. ..-.|.+-.
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~--------~~p~w~~i~ 119 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN--------KGPSWAPIR 119 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc--------CCcccceeE
Confidence 3456789999999886665555 666777766 5899999999999999887521111000 111122221
Q ss_pred CEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716 162 EMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI 199 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~ 199 (293)
+.-.......+|....|.++|.+++..+ +.+.|+|-
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1112222335667788888887766543 46888874
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.19 Score=44.18 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=71.4
Q ss_pred eecCccccEEEEEECCCCC--e-----EEEEeCCCcEEEeecCCCCCCceeEEEeeCCc----CCeeEEEEcCCCCCEEE
Q 022716 15 EYTGHKKKVHSVAWNCTGT--K-----LASGSVDQTARVWHIEPHGHGKVKDIELRGHA----DSVDQLCWDPKHADLIA 83 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~--~-----l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~----~~i~~~~~~~~~~~~l~ 83 (293)
++.-|.. |.-+.+.|+.+ + -+.|-+|+.|.-||..-+....+. -..+|. ..-.|.+ .++...++
T Consensus 371 EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~--~~q~kqy~~k~nFsc~a--TT~sG~Iv 445 (644)
T KOG2395|consen 371 EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA--VVQSKQYSTKNNFSCFA--TTESGYIV 445 (644)
T ss_pred EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee--eeeccccccccccceee--ecCCceEE
Confidence 3333443 77777777653 2 255777888888987643322111 112221 1223333 33456889
Q ss_pred EEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716 84 TASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVR 138 (293)
Q Consensus 84 s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~ 138 (293)
.||.+|.||+||--..+....+. +..++..+..+.+|+++++.+ +..+.+.++.
T Consensus 446 vgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 446 VGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred EeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 99999999999963322222333 455667788899999876654 6777777754
No 382
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.58 E-value=1.2 Score=37.48 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=111.0
Q ss_pred CeEEEEeCCCCeeeeeeeecCce--------EEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716 89 KTVRLWDARSGKCSQQAELSGEN--------INITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~ 158 (293)
-.|.+||.++-.....+.....+ ...+++.||+++++.- -...|.+.|+...+.+.+...+.-....-+.
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~ 146 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG 146 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC
Confidence 34889999988777766665431 1367889999888764 3457899999888777665543322222222
Q ss_pred cCCCEEEEecCCCCEEEEEECCCCCE---------------------------EEEecCCCcEEEEeCCCCE--EEEEee
Q 022716 159 MTGEMFFLTTGNAGCYCIAIDPMGRY---------------------------FAVGSADSLVSLWDISEML--CVRTFT 209 (293)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------l~~gs~d~~i~iwd~~~~~--~~~~~~ 209 (293)
...+...|+++....+.+..+|+. ++--+-+|.|+-.|+.... ....+.
T Consensus 147 --~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 147 --NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp --TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred --CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 234555566655555544433332 2223444555555543321 111111
Q ss_pred c-------cCC---CeeEEEEccCCCEEEEe---c-----CC--CcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eE
Q 022716 210 K-------LEW---PVRTISFSHTGDYIASA---S-----ED--LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LL 268 (293)
Q Consensus 210 ~-------~~~---~v~~l~~sp~~~~l~s~---s-----~d--~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l 268 (293)
- ..+ ...-+++++..+.|..- + .| ..|-++|..+++.+..++...++.+|..+-+.+ +|
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L 304 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLL 304 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EE
T ss_pred ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEE
Confidence 0 011 23446777655544332 1 12 236777899999999998888899999998764 55
Q ss_pred EEE-EcCCCCCCCCcceEE
Q 022716 269 AYA-GDDKNKYQADEGVFR 286 (293)
Q Consensus 269 a~~-~~d~~~~~~~~~~~~ 286 (293)
... ..++.+.++|-.+.|
T Consensus 305 ~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 305 YALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEETTTTEEEEEETTT--
T ss_pred EEEcCCCCeEEEEeCcCCc
Confidence 433 445666666554443
No 383
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.57 E-value=1.3 Score=37.67 Aligned_cols=66 Identities=17% Similarity=0.110 Sum_probs=39.7
Q ss_pred CCeeEEEEcc-------CCCEEEEecCCCcEEEEEcCCCCEEE---EEe--cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 213 WPVRTISFSH-------TGDYIASASEDLFIDISNVHTGRTVH---QIP--CRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 213 ~~v~~l~~sp-------~~~~l~s~s~d~~i~iw~~~~~~~~~---~~~--~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
..+..+.|-+ .|.++++.-..+.|....+.....+. .+. ...+++.+++.|||+++++.+.++.+|
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 3455566642 45566666666677777766443322 221 223688999999999999988777654
No 384
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.44 E-value=1.9 Score=38.84 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=86.4
Q ss_pred eEEEEeCCCCeeeeeeeecCce-------EEEEEc----CCCC---EEEEEeCCCeEEEEEccccceeeeecccceeeee
Q 022716 90 TVRLWDARSGKCSQQAELSGEN-------INITYK----PDGT---HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI 155 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~----~~~~---~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v 155 (293)
.+.-.|.++++..-..+...+. ....+. -++. .+++++.+|.+..+|.++.+.+-...... ..+
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~ 334 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPM 334 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--ccc
Confidence 6888899999876654432110 000111 1333 57788889999999999887654432210 001
Q ss_pred EEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--C------CCeeEEEEccCCCEE
Q 022716 156 AWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--E------WPVRTISFSHTGDYI 227 (293)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--~------~~v~~l~~sp~~~~l 227 (293)
..++ ..+++...... ..+......+.....+|.+.-.|+.+++.+=+.... . .+...-.....+..|
T Consensus 335 ~~~~--~~vyv~~~~~~---~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v 409 (488)
T cd00216 335 AYDP--GLVYLGAFHIP---LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV 409 (488)
T ss_pred ccCC--ceEEEcccccc---ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE
Confidence 1111 11111110000 000000000011223455666666666543222111 0 111110111256788
Q ss_pred EEecCCCcEEEEEcCCCCEEEEEecCCCcce--eEECCCCCeE
Q 022716 228 ASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYNLL 268 (293)
Q Consensus 228 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~--~~~sp~~~~l 268 (293)
+.++.|+.++-+|..+|+.+-..+...++.+ +.+..++.++
T Consensus 410 ~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~y 452 (488)
T cd00216 410 FAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQY 452 (488)
T ss_pred EEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEE
Confidence 8999999999999999999877776555533 5555566443
No 385
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.65 Score=41.01 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=58.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC---CEEEEe
Q 022716 112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG---RYFAVG 188 (293)
Q Consensus 112 ~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~g 188 (293)
..+..++.|..++..+.+|-+.+.=.+...+....+.+..+-.+.-.+-+..++..+..-.+..++|||+. ..+..-
T Consensus 107 ~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL 186 (741)
T KOG4460|consen 107 YQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLL 186 (741)
T ss_pred EEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEE
Confidence 34667899999999999987766543433333333333222222222333444444444455678899975 778888
Q ss_pred cCCCcEEEEeCCCCEE
Q 022716 189 SADSLVSLWDISEMLC 204 (293)
Q Consensus 189 s~d~~i~iwd~~~~~~ 204 (293)
++|+.|++||....+.
T Consensus 187 ~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 187 TSDNVIRIYSLSEPTE 202 (741)
T ss_pred ecCcEEEEEecCCcch
Confidence 9999999999865443
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.32 E-value=1.2 Score=36.03 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=101.4
Q ss_pred ccEEEEEECCCCCeEEEEeCCC--cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
.--..+.|.++|..+-+.+.-| .|+.+|++... ......++.. -.--.++... ..++.-.-.++...+||..+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~--~~~~~~l~~~-~FgEGit~~~--d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK--VLQSVPLPPR-YFGEGITILG--DKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS--EEEEEE-TTT---EEEEEEET--TEEEEEESSSSEEEEEETTT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc--EEEEEECCcc-ccceeEEEEC--CEEEEEEecCCeEEEEcccc
Confidence 4567888877888888888876 77788887532 2222333221 1111222221 22333334467788999998
Q ss_pred CeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc---cc---eeeeeEEecCCCEEEEecCCCC
Q 022716 99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GY---EVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~---~~---~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
-+.+..+...+.-..++ .|++.|+....+.++..+|.++++..+.... +. .++.+.|-
T Consensus 120 l~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-------------- 183 (264)
T PF05096_consen 120 LKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-------------- 183 (264)
T ss_dssp TEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--------------
T ss_pred ceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--------------
Confidence 88888777777766676 5677888887788999999988876655432 11 12223321
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee---------------ccCCCeeEEEEccCCC-EEEEecC
Q 022716 173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT---------------KLEWPVRTISFSHTGD-YIASASE 232 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~---------------~~~~~v~~l~~sp~~~-~l~s~s~ 232 (293)
+|...|=.=....|...|..+|.....+. ....-.+.|+|.|... +++||-.
T Consensus 184 --------~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 --------NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp --------TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred --------cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 23333333334456666666666554331 0123478899988754 5577644
No 387
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.25 E-value=1.9 Score=37.78 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=66.8
Q ss_pred ccEEEEEECCCCCeEEEE-eCCC----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-------
Q 022716 21 KKVHSVAWNCTGTKLASG-SVDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------- 88 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~-~~dg----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d------- 88 (293)
..+....+||+|+++|-+ +..| .++++|++.+ ....-.+..- .-..+.|.+++..++++...+
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccC
Confidence 345578899999998754 3344 5999999753 2221122211 112389998766666665333
Q ss_pred ---CeEEEEeCCCCeee--eeeeec--Cc-eEEEEEcCCCCEEEEEeC---C-CeEEEEEcccc
Q 022716 89 ---KTVRLWDARSGKCS--QQAELS--GE-NINITYKPDGTHIAVGNR---D-DELTILDVRKF 140 (293)
Q Consensus 89 ---~~i~vwd~~~~~~~--~~~~~~--~~-~~~~~~~~~~~~l~~~~~---d-~~i~l~d~~~~ 140 (293)
..|..|.+.+.... ..++.. .. ...+..++|+++++.... + ..+.+.|+...
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 23677787665432 222222 22 457888999999876543 2 45777787653
No 388
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.22 E-value=0.63 Score=36.31 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=35.3
Q ss_pred CEEEEecCCCcEEEEeCC--CCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716 183 RYFAVGSADSLVSLWDIS--EMLCVRTFTKLEWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 183 ~~l~~gs~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 230 (293)
..|..+...++|.+|++. ....+.+|... +.|..+.++..|.||+|-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
Confidence 344444666789999987 44556666554 689999999999999996
No 389
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.20 E-value=0.15 Score=44.08 Aligned_cols=155 Identities=18% Similarity=0.147 Sum_probs=85.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE-EEEECCCCCEEEEecCC
Q 022716 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY-CIAIDPMGRYFAVGSAD 191 (293)
Q Consensus 113 ~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gs~d 191 (293)
.+-..|||+.+.+-+. .++.++++.+.....+ +. .=+..++.. ..++ .+..-..+.-+++++.|
T Consensus 225 qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl-------~~dspg~~~------~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 225 QLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KL-------VDDSPGDSR------HQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred hhEECCCCCEEEEecC-CeEEEEeecccccchh-hh-------hhcCCCchH------HHHHHHHHHHhCceeEEEEcCC
Confidence 3557899998877665 7888888765332111 10 000000000 0000 01111235567888889
Q ss_pred CcEEEE-eCCCCE--EEEEeecc---CCCeeEEEEccC--CCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECC
Q 022716 192 SLVSLW-DISEML--CVRTFTKL---EWPVRTISFSHT--GDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 263 (293)
Q Consensus 192 ~~i~iw-d~~~~~--~~~~~~~~---~~~v~~l~~sp~--~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp 263 (293)
|-|.-| |.+..- .++..... ..++..+ .|+ .+-+++-+..|++..+.....+.+..-.....+.-+++||
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp 367 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSP 367 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCc
Confidence 988887 554321 11111111 1223333 243 3456777788888777665555444333334567789999
Q ss_pred CCCeEEEEEcCCCCCCCCcceEEEEeeecC
Q 022716 264 KYNLLAYAGDDKNKYQADEGVFRIYGFENA 293 (293)
Q Consensus 264 ~~~~la~~~~d~~~~~~~~~~~~~~~~~~~ 293 (293)
+++++++-. .|..|+|++||.
T Consensus 368 ~~~~Ll~e~---------~gki~~~~l~Nr 388 (733)
T COG4590 368 NQAYLLSED---------QGKIRLAQLENR 388 (733)
T ss_pred ccchheeec---------CCceEEEEecCC
Confidence 999988764 367899999983
No 390
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.089 Score=50.21 Aligned_cols=108 Identities=15% Similarity=0.089 Sum_probs=66.7
Q ss_pred CEEEEEECCCCCEEEEecC--CCcEEEEeCCCCEEEE-----Eeecc------CCCeeEEEEccCCC-EEEEecCCCcEE
Q 022716 172 GCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVR-----TFTKL------EWPVRTISFSHTGD-YIASASEDLFID 237 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~--d~~i~iwd~~~~~~~~-----~~~~~------~~~v~~l~~sp~~~-~l~s~s~d~~i~ 237 (293)
.+..+.+.+|+...++... +-.|..||++....-. -+..+ ......+.|+|.-. ..|.+..|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3444555666655444333 3368889987542211 11111 12356677888644 356667888888
Q ss_pred EEEcCCCCE-EEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 238 ISNVHTGRT-VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 238 iw~~~~~~~-~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
+..+..... ...++.....++++|+|+|.+++.|-..+.+-|
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQ 224 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQ 224 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEE
Confidence 887654332 333455667899999999999999987765544
No 391
>PHA03098 kelch-like protein; Provisional
Probab=95.13 E-value=2 Score=39.16 Aligned_cols=105 Identities=11% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCCEEEEecCC------CcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEecCC--------CcEEEEEcCCCC
Q 022716 181 MGRYFAVGSAD------SLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASED--------LFIDISNVHTGR 245 (293)
Q Consensus 181 ~~~~l~~gs~d------~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~d--------~~i~iw~~~~~~ 245 (293)
+++.++.|+.+ +.+..||..+.+-.. ......+ -...+...++...+.|+.+ ..+.+||..+.+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 56777777632 458889987643221 1111111 0111223456666777643 237888887764
Q ss_pred EEE--EEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 246 TVH--QIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 246 ~~~--~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
-.. .++. +.....+.+ ++.+++.||.+...+ ...+.+|+.+
T Consensus 468 W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~---~~~v~~yd~~ 511 (534)
T PHA03098 468 WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYY---INEIEVYDDK 511 (534)
T ss_pred eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcc---cceeEEEeCC
Confidence 322 1221 111112223 677888888764322 2345666654
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=0.24 Score=47.15 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=64.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCee--eeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc-cc---eee
Q 022716 80 DLIATASGDKTVRLWDARSGKC--SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GY---EVN 153 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-~~---~~~ 153 (293)
..++.|+..|.+-..|....-+ .+-....+++.+++|+.+|+.++.|-.+|.|.+||+....+.+.... +. .+-
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 4567777778887777654322 22234567889999999999999999999999999988777666542 22 233
Q ss_pred eeEEecCCCEEEEecCCCCEEEEEEC
Q 022716 154 EIAWNMTGEMFFLTTGNAGCYCIAID 179 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
.+.|...+..+....+.+..+.+.++
T Consensus 180 ~v~~t~~nS~llt~D~~Gsf~~lv~n 205 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGSFWKLVFN 205 (1206)
T ss_pred EEEEeCCCcEEEEccCCCceEEEEec
Confidence 34444444333333333335555544
No 393
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.91 E-value=1 Score=41.40 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=65.2
Q ss_pred EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEc--cCCCEEEEecCCCcEEEEEcCC---------
Q 022716 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFS--HTGDYIASASEDLFIDISNVHT--------- 243 (293)
Q Consensus 176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s--p~~~~l~s~s~d~~i~iw~~~~--------- 243 (293)
+.-+..++..++-+...++.|||.+.+....+-. ....+|..++|. |+|+.+.+.+-...|.++.-..
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3334445555555555679999998876433221 335689999986 7899998888888888875421
Q ss_pred CCEEEEEe---c-CCCcceeEECCCCCeEEEEEc
Q 022716 244 GRTVHQIP---C-RAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 244 ~~~~~~~~---~-~~~i~~~~~sp~~~~la~~~~ 273 (293)
...++.+. + ..+|.+..|-++|..++.+|.
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 12334332 2 247899999999987776663
No 394
>PHA02713 hypothetical protein; Provisional
Probab=94.73 E-value=1.7 Score=39.77 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=40.6
Q ss_pred cEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCCEEEEecCC------CcEEEEEcCC-CCE--EEEEecCC-CcceeE
Q 022716 193 LVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASED------LFIDISNVHT-GRT--VHQIPCRA-AMNSVE 260 (293)
Q Consensus 193 ~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d------~~i~iw~~~~-~~~--~~~~~~~~-~i~~~~ 260 (293)
.+..||.++..- +..+...... .-...-+++..+.|+.+ ..+..||..+ .+- +..++... ....+.
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~--~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIR--PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCccccc--CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 477788765432 2222111111 11122356666677654 2367899887 332 23333222 222333
Q ss_pred ECCCCCeEEEEEcCC
Q 022716 261 WNPKYNLLAYAGDDK 275 (293)
Q Consensus 261 ~sp~~~~la~~~~d~ 275 (293)
. ++.++++||.++
T Consensus 511 ~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 511 H--DNTIMMLHCYES 523 (557)
T ss_pred E--CCEEEEEeeecc
Confidence 3 678999999776
No 395
>PHA03098 kelch-like protein; Provisional
Probab=94.69 E-value=3.1 Score=37.88 Aligned_cols=62 Identities=8% Similarity=0.118 Sum_probs=31.4
Q ss_pred CCCEEEEecCC--------CcEEEEeCCCCEEE--EEeeccCCCeeEEEEccCCCEEEEecCC-----CcEEEEEcCCC
Q 022716 181 MGRYFAVGSAD--------SLVSLWDISEMLCV--RTFTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTG 244 (293)
Q Consensus 181 ~~~~l~~gs~d--------~~i~iwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~~ 244 (293)
++..++.|+.+ ..+.+||..+.+-. ..+.........+. .+++..+.|+.+ ..+.++|..+.
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 45666666543 23888888764322 11111111112222 266677777654 34667776554
No 396
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.66 E-value=4.3 Score=38.87 Aligned_cols=98 Identities=11% Similarity=0.174 Sum_probs=60.0
Q ss_pred EEEECCC-CCEEEEecC----------CCcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 175 CIAIDPM-GRYFAVGSA----------DSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 175 ~~~~~~~-~~~l~~gs~----------d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
+..|+.| +.++++|+. .|.|.+|.......++....+ ++.+.++.. -+|++||. =...|++++.
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~ 855 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEW 855 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEc
Confidence 3446666 778888862 367777776553334433332 345555542 36777765 4456888888
Q ss_pred CCCCEEEE-EecCCCcceeEECCCCCeEEEEEcCC
Q 022716 242 HTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 242 ~~~~~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.+.+.++. .....++..+...-.+..+|.|..=+
T Consensus 856 t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~ 890 (1096)
T KOG1897|consen 856 TTERELRIECNISNPIIALDLQVKGDEIAVGDLMR 890 (1096)
T ss_pred cccceehhhhcccCCeEEEEEEecCcEEEEeeccc
Confidence 77755542 23345677777777888888887543
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.63 E-value=2.3 Score=35.52 Aligned_cols=101 Identities=23% Similarity=0.324 Sum_probs=58.7
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCC--CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE-cCCCCEE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISE--MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTGRTV 247 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~-~~~~~~~ 247 (293)
..+..+...++++++++++.-+-..-||.-. ..+.. ..-...|.++.|+|++...+.+ ..+.|++-+ .......
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 4566777889999998887666666787643 33322 2345689999999998876654 889999888 2222222
Q ss_pred EE--Eec---CCCcceeEECCCCCeEEEEEcC
Q 022716 248 HQ--IPC---RAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 248 ~~--~~~---~~~i~~~~~sp~~~~la~~~~d 274 (293)
.. .+. .-.+-.++|.|+.+..|+|+..
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp ---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 11 221 1236788999998888888754
No 398
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=94.43 E-value=0.45 Score=43.48 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=44.7
Q ss_pred CCCCEEEEecCCCcEEEEeCCC----CEEEEE--ee---------c-----------cCCCeeEEEEcc----CCCEEEE
Q 022716 180 PMGRYFAVGSADSLVSLWDISE----MLCVRT--FT---------K-----------LEWPVRTISFSH----TGDYIAS 229 (293)
Q Consensus 180 ~~~~~l~~gs~d~~i~iwd~~~----~~~~~~--~~---------~-----------~~~~v~~l~~sp----~~~~l~s 229 (293)
++...++.+..||.+....... +..... +. + ......+++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4566778888888887776543 111111 11 0 012355666666 6789999
Q ss_pred ecCCCcEEEEEcCCCCEEEEEe
Q 022716 230 ASEDLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 230 ~s~d~~i~iw~~~~~~~~~~~~ 251 (293)
.+.|+.+++||+.+++.+..+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999877654
No 399
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.30 E-value=3.4 Score=36.19 Aligned_cols=153 Identities=13% Similarity=0.190 Sum_probs=82.0
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCe-----eeeeeeecCceEEEEEcC----CCCEEEEEeCCCeEEEEEccccceeeee
Q 022716 76 PKHADLIATASGDKTVRLWDARSGK-----CSQQAELSGENINITYKP----DGTHIAVGNRDDELTILDVRKFKPIHRR 146 (293)
Q Consensus 76 ~~~~~~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~i~l~d~~~~~~~~~~ 146 (293)
+++.+.++.|+..|.++||+...+. .+-..+...++..+...+ .....++.-.-..+.+|.+...... .
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~--~ 111 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT--V 111 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC--c
Confidence 4456789999999999999975443 333455667777766432 1222333345667777776321110 0
Q ss_pred cccceeeeeEEecCCCEEEEecC--CCCEEEEEECC----C-CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEE
Q 022716 147 KFGYEVNEIAWNMTGEMFFLTTG--NAGCYCIAIDP----M-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 219 (293)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~----~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~ 219 (293)
.++.... +..+..+ .....++...| . ...+.+-+.||.+.+|+-+...-...+.. .--...+.
T Consensus 112 ~~g~~~~---------L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~ 181 (418)
T PF14727_consen 112 EHGNQYQ---------LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLC 181 (418)
T ss_pred ccCcEEE---------EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeE
Confidence 0000000 0000000 00111122211 2 35788889999999999776543333333 22233467
Q ss_pred EccCCCEEEEecCCCcEEEEE
Q 022716 220 FSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 220 ~sp~~~~l~s~s~d~~i~iw~ 240 (293)
|.|.-..+++++.+..+.-|.
T Consensus 182 Y~~~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 182 YCPRTDSFVTASSSWTLECYK 202 (418)
T ss_pred EeecCCEEEEecCceeEEEec
Confidence 777777777777776665554
No 400
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.19 E-value=2.5 Score=34.31 Aligned_cols=143 Identities=14% Similarity=0.165 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCCEEEEEe--C-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEE
Q 022716 110 ENINITYKPDGTHIAVGN--R-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA 186 (293)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~--~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (293)
...+.+.+++++.++... . ...+.++.... ...... ....+..-.|++++...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~---------------------~g~~l~~PS~d~~g~~W~ 81 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL---------------------TGGSLTRPSWDPDGWVWT 81 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec---------------------cCCccccccccCCCCEEE
Confidence 455788899998777665 2 23444443322 111100 111333456677766666
Q ss_pred EecCCCcEEEEe-CCCCEE-EEEeecc--CCCeeEEEEccCCCEEEEec---CCCcEEEEEcC---CC--CEE---EEEe
Q 022716 187 VGSADSLVSLWD-ISEMLC-VRTFTKL--EWPVRTISFSHTGDYIASAS---EDLFIDISNVH---TG--RTV---HQIP 251 (293)
Q Consensus 187 ~gs~d~~i~iwd-~~~~~~-~~~~~~~--~~~v~~l~~sp~~~~l~s~s---~d~~i~iw~~~---~~--~~~---~~~~ 251 (293)
....+...+++. ...+.. ....... ...|.++++||||..+|.-. .++.|.+-.+. .+ ..+ ..+.
T Consensus 82 v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 82 VDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred EEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 666666666663 222211 1112111 12899999999999876654 45777777654 23 111 1111
Q ss_pred --cCCCcceeEECCCCCeEEEEEcCC
Q 022716 252 --CRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 252 --~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
....+.+++|.++..+++.+...+
T Consensus 162 ~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 162 PPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ccccCcceeeeecCCCEEEEEeCCCC
Confidence 234688999999998877776543
No 401
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.02 E-value=3.6 Score=35.40 Aligned_cols=190 Identities=17% Similarity=0.167 Sum_probs=84.9
Q ss_pred EEcCCCCCEEEEEeCCCe--EEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Q 022716 73 CWDPKHADLIATASGDKT--VRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG 149 (293)
Q Consensus 73 ~~~~~~~~~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~ 149 (293)
+|.+++..+|+++..|+. +.+.|+.+++..+.....+. ......+|+++.++-......+.-.|+++.+.......+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 566776667776665554 56668888887665554332 223556788888776666678888899887644333322
Q ss_pred ceee-eeEEec--CCCEEEEecCCCCEEEEEEC-CCCCE---------EEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716 150 YEVN-EIAWNM--TGEMFFLTTGNAGCYCIAID-PMGRY---------FAVGSADSLVSLWDISEMLCVRTFTKLEWPVR 216 (293)
Q Consensus 150 ~~~~-~v~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~---------l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~ 216 (293)
..-. ...|.. ++..+.. +... .+... +.-+-....|.-.|+++++.. .+......+.
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g---------~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~~~~wlg 191 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVG---------IEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFEDTDWLG 191 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEE---------EEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEEESS-EE
T ss_pred cccccccceeeCCCccEEEE---------EEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEecCcccc
Confidence 2211 122321 1111110 0000 00000 000111234666677777643 3334456788
Q ss_pred EEEEccCCC-EEEEec---CCCc-EEEEEcCC-CCEEEEEecCCCccee---EECCCCCeEEEEE
Q 022716 217 TISFSHTGD-YIASAS---EDLF-IDISNVHT-GRTVHQIPCRAAMNSV---EWNPKYNLLAYAG 272 (293)
Q Consensus 217 ~l~~sp~~~-~l~s~s---~d~~-i~iw~~~~-~~~~~~~~~~~~i~~~---~~sp~~~~la~~~ 272 (293)
.+.|+|... .|+-|- .|.. -+||-+.+ +...+.+..+.+--++ -|.|+|..|..-+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe
Confidence 999999754 445543 3443 57887764 4434433222222222 4889998777654
No 402
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.90 E-value=0.04 Score=51.20 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=76.3
Q ss_pred CeEEEEeCC--CCeeeeeeee------cCc---eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716 89 KTVRLWDAR--SGKCSQQAEL------SGE---NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 89 ~~i~vwd~~--~~~~~~~~~~------~~~---~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
|...|||++ .|+....+.. ... +..+-|.++..++..+-.++++++.........--+.++..+.++++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 667888864 3433222221 111 22334455666777777788888766543221100112222222111
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-----CCEEEEEeeccCCCeeEE-EEccCC-------
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-----EMLCVRTFTKLEWPVRTI-SFSHTG------- 224 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-----~~~~~~~~~~~~~~v~~l-~~sp~~------- 224 (293)
-..| -+.--.++|||+.+|....||.++.|.+. .-.++...+.|+.....+ -+..+-
T Consensus 233 ~~~g----------~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~ 302 (1283)
T KOG1916|consen 233 FAEG----------VLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIG 302 (1283)
T ss_pred Hhhc----------hhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccc
Confidence 1111 11122378999999999999999999863 223455666676432222 122111
Q ss_pred --CEEEEecC-CCcEEEEEcCCCCEE
Q 022716 225 --DYIASASE-DLFIDISNVHTGRTV 247 (293)
Q Consensus 225 --~~l~s~s~-d~~i~iw~~~~~~~~ 247 (293)
.++.++++ ...+++|.....+++
T Consensus 303 ~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 303 KWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeEEEEecccCCcceeEeeccchhhh
Confidence 24455554 344788877655443
No 403
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.89 E-value=0.0064 Score=52.43 Aligned_cols=154 Identities=13% Similarity=0.108 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE-EEEec
Q 022716 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGS 189 (293)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~gs 189 (293)
++...|.|.+..++.++.+..+..+|-.... ..........- .++++.++.. ++.+-
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n~tg~al---------------------dm~wDkegdvlavlAe 94 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELNPTGKAL---------------------DMAWDKEGDVLAVLAE 94 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce-ecccCCchhHh---------------------hhhhccccchhhhhhh
Confidence 4566788888888888888888888843221 11111222222 3334444433 34455
Q ss_pred CCCcEEEEeCCCCEEEEEe--ec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCC
Q 022716 190 ADSLVSLWDISEMLCVRTF--TK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY 265 (293)
Q Consensus 190 ~d~~i~iwd~~~~~~~~~~--~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~ 265 (293)
..+.+.+||+.+-. ..++ .+ +.... +.|++.+..++.+-..+.+.|++..+.+.+-.+. +..++..++|.+.+
T Consensus 95 k~~piylwd~n~ey-tqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 95 KTGPIYLWDVNSEY-TQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred cCCCeeechhhhhh-HHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 67789999986421 1111 11 11122 6788989999999899999999998877665555 66789999999955
Q ss_pred CeEEEEEcCCCCCC--CCcceEEEEee
Q 022716 266 NLLAYAGDDKNKYQ--ADEGVFRIYGF 290 (293)
Q Consensus 266 ~~la~~~~d~~~~~--~~~~~~~~~~~ 290 (293)
+.+.+++|..+-+ ..+.+.+.|..
T Consensus 172 -~vil~dcd~~L~v~~qegeta~ltev 197 (615)
T KOG2247|consen 172 -YVILCDCDNTLSVTTQEGETASLTEV 197 (615)
T ss_pred -eeeecCcHHHHHHhhhccceeeeeec
Confidence 6677777764443 44455566543
No 404
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.83 E-value=0.43 Score=26.70 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=26.7
Q ss_pred CeeEEEEcCCCC--CEEEEEeCCCeEEEEeCCCC
Q 022716 68 SVDQLCWDPKHA--DLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 68 ~i~~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~ 99 (293)
.|.++.|+|... ++|+-+-.-+.|.++|+++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578899998766 78888888899999999853
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.67 E-value=3.1 Score=38.25 Aligned_cols=187 Identities=16% Similarity=0.130 Sum_probs=87.5
Q ss_pred CCCeEEEEeCC-C-----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe-----EEEEeCCCC
Q 022716 31 TGTKLASGSVD-Q-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-----VRLWDARSG 99 (293)
Q Consensus 31 ~~~~l~s~~~d-g-----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~-----i~vwd~~~~ 99 (293)
.+...++||.| | ++..||...+............+.- .++. -++.+.+.||.||. +-.||..+.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~---~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF---GVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc---eeEE--ECCEEEEEeccccccccccEEEecCCCC
Confidence 45677899998 3 4555665543322211111111111 1121 13467778888865 556777665
Q ss_pred eeeeeeeecCceEEE-EEcCCCCEEEEEeCCCe------EEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716 100 KCSQQAELSGENINI-TYKPDGTHIAVGNRDDE------LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 100 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d~~------i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
+.............. ...-+|+..++|+.++. +..+|..+..-.....+. ..-. .
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~---------------~~R~---~ 468 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN---------------TRRS---G 468 (571)
T ss_pred cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc---------------cccc---c
Confidence 543222111111121 22346778888886653 445565543321111100 0000 0
Q ss_pred EEEEEECCCCCEEEEecCCC-----cEEEEeCCCCE--EEEEeeccCCCeeEEEEccCCCEEEEecCCCc-----EEEEE
Q 022716 173 CYCIAIDPMGRYFAVGSADS-----LVSLWDISEML--CVRTFTKLEWPVRTISFSHTGDYIASASEDLF-----IDISN 240 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~-----~i~iwd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-----i~iw~ 240 (293)
. .++ .-++.+++.|+.|+ +|..||.++.. .+..++.....+-.+. -+++..+.|+.|+. |..||
T Consensus 469 ~-g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~yd 544 (571)
T KOG4441|consen 469 F-GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYD 544 (571)
T ss_pred c-eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcC
Confidence 0 011 23677888888776 36778876543 2211221222221121 25666778887755 34555
Q ss_pred cCCC
Q 022716 241 VHTG 244 (293)
Q Consensus 241 ~~~~ 244 (293)
..+.
T Consensus 545 p~~d 548 (571)
T KOG4441|consen 545 PETD 548 (571)
T ss_pred CCCC
Confidence 4443
No 406
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.59 E-value=5.6 Score=36.22 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=55.8
Q ss_pred CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC--Ce-------eEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SV-------DQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (293)
Q Consensus 32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~--~i-------~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 102 (293)
+..+..++.++.|.-.|..+.. ............ .. ..+.+. ...++.++.|+.+.-.|.++|+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk--~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGK--ELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCc--eeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEE
Confidence 4567777778888888876431 222221111100 00 011221 235667788999999999999876
Q ss_pred eeeeecCce--EEEEEcC---CCCEEEEEeC------CCeEEEEEcccccee
Q 022716 103 QQAELSGEN--INITYKP---DGTHIAVGNR------DDELTILDVRKFKPI 143 (293)
Q Consensus 103 ~~~~~~~~~--~~~~~~~---~~~~l~~~~~------d~~i~l~d~~~~~~~ 143 (293)
-........ ..+.-+| ++ .++++.. ++.+..+|.++.+.+
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence 544332111 0111111 33 4555432 578888888776654
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.47 E-value=2.6 Score=37.40 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=78.2
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCC-------EEEEEeCCCeEEEEEccccceeeeeccc
Q 022716 78 HADLIA-TASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFKPIHRRKFG 149 (293)
Q Consensus 78 ~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~l~d~~~~~~~~~~~~~ 149 (293)
++.+++ .|+....+.-.|+.-|+.+..+..+..+ -+.|.|+.+ .-++|-++..|.-.|.|-...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN------- 549 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN------- 549 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCC-------
Confidence 344544 4444556677788888888877777666 566666442 345666666666666653210
Q ss_pred ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEE
Q 022716 150 YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS 229 (293)
Q Consensus 150 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s 229 (293)
.+..... ... . .... .+........++|+++..|-|++||--..+.-..+.+....|..+..+.+|.++.+
T Consensus 550 -Ki~v~es---KdY--~--tKn~-Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 550 -KIKVVES---KDY--K--TKNK-FSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred -ceeeeee---hhc--c--cccc-ccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence 0000000 000 0 0000 11122345678999999999999995332222235566778999999999987644
No 408
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=1.2 Score=39.54 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=51.1
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeC---------CCCEEE---EEe-------e-ccCCCeeEEEEccCC---CEEE
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDI---------SEMLCV---RTF-------T-KLEWPVRTISFSHTG---DYIA 228 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~---------~~~~~~---~~~-------~-~~~~~v~~l~~sp~~---~~l~ 228 (293)
.+..+..++.|..++..+.+|.+.++=. +.++.. +++ . ...-.+...+|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3566788899999999999997766532 222111 111 1 112246778999986 6788
Q ss_pred EecCCCcEEEEEcCCCCEE
Q 022716 229 SASEDLFIDISNVHTGRTV 247 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~~~ 247 (293)
.-+.|+++++||....+.+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 8899999999998765443
No 409
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.06 E-value=4.2 Score=33.26 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=69.0
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeE----------EEeeCCcCCeeEEE-EcCCCCCEEEEEeCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----------IELRGHADSVDQLC-WDPKHADLIATASGD 88 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----------~~~~~h~~~i~~~~-~~~~~~~~l~s~~~d 88 (293)
...|..+..-++-+.|+.=+ |+.+.+++++.-....... .........+...+ .........+.....
T Consensus 35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k 113 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK 113 (275)
T ss_pred cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC
Confidence 34599999988877766554 5999999986422111000 00111223444444 112222233344455
Q ss_pred CeEEEEeCCCC-----eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce
Q 022716 89 KTVRLWDARSG-----KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP 142 (293)
Q Consensus 89 ~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~ 142 (293)
..|.+|..... +....+.....+..++|. ++.++.|.. +...+.|+.+...
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~ 169 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSP 169 (275)
T ss_pred CEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCc
Confidence 58888776542 344556677888888888 456777764 4577888875543
No 410
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.87 E-value=4 Score=32.46 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=39.0
Q ss_pred EECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc
Q 022716 177 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS 221 (293)
Q Consensus 177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 221 (293)
+++.+|.+.++.-.-++|.-.|..+++.+.+++-....|++++|-
T Consensus 218 ~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 218 TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 335688888888888999999999999999988778899999996
No 411
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.82 E-value=1.4 Score=35.01 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=51.0
Q ss_pred ECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-------e-------ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 178 IDPMGRYFAVGSADSLVSLWDISEMLCVRTF-------T-------KLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
+...+.++++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+. |..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecccc
Confidence 4457889999999999999999987654321 1 23356888899988988777654 6788888765
Q ss_pred CCEE
Q 022716 244 GRTV 247 (293)
Q Consensus 244 ~~~~ 247 (293)
+.-+
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 5433
No 412
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.82 E-value=1.9 Score=37.71 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=57.4
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC----eeEEEEccC--------------CCEE-EEecC
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP----VRTISFSHT--------------GDYI-ASASE 232 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~----v~~l~~sp~--------------~~~l-~s~s~ 232 (293)
.+.++..+|.+++.|+.+.=|.|.++|+.++..++.++++... +....-... ..+| +-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 4678999999999999888899999999999888888887643 111111111 1233 44566
Q ss_pred CCcEEEEEcCCCCEEEEEe
Q 022716 233 DLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 233 d~~i~iw~~~~~~~~~~~~ 251 (293)
-|.|.||.++.|..+..+.
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCeEEEEecCCCCEEEEEE
Confidence 7889999998888776554
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.67 E-value=0.79 Score=25.65 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.0
Q ss_pred CeeEEEEccCC---CEEEEecCCCcEEEEEcCC
Q 022716 214 PVRTISFSHTG---DYIASASEDLFIDISNVHT 243 (293)
Q Consensus 214 ~v~~l~~sp~~---~~l~s~s~d~~i~iw~~~~ 243 (293)
.++++.|||+. .+|+-+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 68899999864 4788877889999999985
No 414
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.57 E-value=4.1 Score=31.89 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=67.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCeee--eeeeecCceEEEEEcCCCCEEEEEeCCC------eEEE---EEcc--ccceeeee
Q 022716 80 DLIATASGDKTVRLWDARSGKCS--QQAELSGENINITYKPDGTHIAVGNRDD------ELTI---LDVR--KFKPIHRR 146 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~------~i~l---~d~~--~~~~~~~~ 146 (293)
+.|+.+.....|.+|++....+. ..+..-+.+..+.++..|+++++--++. .+++ |+.. ...+++.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 44444456677999999855443 3444557888999999999999976543 2333 3322 22333333
Q ss_pred cccceeeeeEEec-CCCEEEEec-CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC
Q 022716 147 KFGYEVNEIAWNM-TGEMFFLTT-GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 202 (293)
Q Consensus 147 ~~~~~~~~v~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~ 202 (293)
..|..+....-.+ ...+..+.- -..++.|++.-|...-|++|+ ++++.||.++..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 3332221111001 111222211 134567888878765566665 457899987543
No 415
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.48 E-value=6 Score=33.59 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=56.6
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEeCCCCEE---EEEee----ccCCCeeEEEEccC---CCEEE-EecCC--------
Q 022716 173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLC---VRTFT----KLEWPVRTISFSHT---GDYIA-SASED-------- 233 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~---~~~~~----~~~~~v~~l~~sp~---~~~l~-s~s~d-------- 233 (293)
...+++.|+++.+++ ...|.|++++ ..+.. +..+. ..+.....++++|+ ..+|. +-+..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 457889999887765 5599999999 44433 22221 12346789999995 33332 22211
Q ss_pred CcEEEEEcCCC-------CE-EEEEec----CCCcceeEECCCCCeEEEEEcCCC
Q 022716 234 LFIDISNVHTG-------RT-VHQIPC----RAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 234 ~~i~iw~~~~~-------~~-~~~~~~----~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
..|.-|....+ +. +..++. ...-..|+|.|+|.++++.|+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23444443332 11 122232 123456999999998888887765
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.47 E-value=4.7 Score=38.05 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=49.8
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCC---------CE---EEEEe--------eccCCCeeEEEEccC---CCEEE
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISE---------ML---CVRTF--------TKLEWPVRTISFSHT---GDYIA 228 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~---------~~---~~~~~--------~~~~~~v~~l~~sp~---~~~l~ 228 (293)
.+..|.++|+|+++|..+..|...+.=.+. +. ..+++ ......|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 466778889999888888766544432211 10 01111 123346889999997 47899
Q ss_pred EecCCCcEEEEEcCCCC
Q 022716 229 SASEDLFIDISNVHTGR 245 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~ 245 (293)
.-..|+++++||+...+
T Consensus 166 vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEecCCEEEEEecCCCC
Confidence 99999999999997654
No 417
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.39 E-value=1.1 Score=24.62 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=28.2
Q ss_pred cCCCEEEEe-cCCCcEEEEEcCCCCEEEEEecCCCcceeEE
Q 022716 222 HTGDYIASA-SEDLFIDISNVHTGRTVHQIPCRAAMNSVEW 261 (293)
Q Consensus 222 p~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~ 261 (293)
|++++|..+ -.++.|.++|..+++.+..+.....-..+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 577766554 4678899999998888877765444445554
No 418
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.10 E-value=6.3 Score=32.94 Aligned_cols=138 Identities=12% Similarity=0.155 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec
Q 022716 111 NINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS 189 (293)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs 189 (293)
...+...+||++++++...+-+.-||.-.. -..+.+ .....+.++.|.|++.+.+++
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r---------------------~~~~riq~~gf~~~~~lw~~~- 204 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR---------------------NSSRRIQSMGFSPDGNLWMLA- 204 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----------------------SSS-EEEEEE-TTS-EEEEE-
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc---------------------CccceehhceecCCCCEEEEe-
Confidence 334556788887777765555556664221 111111 123456788888887776654
Q ss_pred CCCcEEEEe-CCCCEEEEE----eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec----CCCcceeE
Q 022716 190 ADSLVSLWD-ISEMLCVRT----FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC----RAAMNSVE 260 (293)
Q Consensus 190 ~d~~i~iwd-~~~~~~~~~----~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~----~~~i~~~~ 260 (293)
..|.|+.=+ ....+.-.. .......+..++|.+++...|+|+... + +.+...|+.-.+... ...+..|.
T Consensus 205 ~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l-~~S~DgGktW~~~~~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 205 RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-L-LVSTDGGKTWQKDRVGENVPSNLYRIV 282 (302)
T ss_dssp TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-E-EEeCCCCccceECccccCCCCceEEEE
Confidence 677777776 222222111 111233578899999988888776653 2 333445555444432 23466788
Q ss_pred ECCCCCeEEEEE
Q 022716 261 WNPKYNLLAYAG 272 (293)
Q Consensus 261 ~sp~~~~la~~~ 272 (293)
|.+..+-+|.|.
T Consensus 283 f~~~~~gf~lG~ 294 (302)
T PF14870_consen 283 FVNPDKGFVLGQ 294 (302)
T ss_dssp EEETTEEEEE-S
T ss_pred EcCCCceEEECC
Confidence 877677788775
No 419
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.90 E-value=1 Score=24.68 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=27.2
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEE
Q 022716 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116 (293)
Q Consensus 77 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 116 (293)
++..++++.-.++.|.++|..+++....+.....+..+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4444566666688999999988877776666555555544
No 420
>PHA02790 Kelch-like protein; Provisional
Probab=91.75 E-value=9.6 Score=34.30 Aligned_cols=61 Identities=10% Similarity=0.073 Sum_probs=29.7
Q ss_pred CCEEEEEeCC--CeEEEEeCCCCeeeeeeeecCceE-EEEEcCCCCEEEEEeCCC---eEEEEEccc
Q 022716 79 ADLIATASGD--KTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDD---ELTILDVRK 139 (293)
Q Consensus 79 ~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~---~i~l~d~~~ 139 (293)
+.+.+.||.+ ..+..||..+++............ .....-+|+..+.|+.++ .+..||.++
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCC
Confidence 4566666653 347778876654332222221111 112233566777777543 344555544
No 421
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.74 E-value=6.2 Score=32.08 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=61.8
Q ss_pred CEEEEEECCCCCEEEEec---CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE-cCCCCEE
Q 022716 172 GCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN-VHTGRTV 247 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs---~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~-~~~~~~~ 247 (293)
.+.+.+++++++.+|... ....+.++..... ..... ....+..-+|++++...+....+....++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 456788899998776655 3344555554332 22221 122677778999988777766666666663 3344322
Q ss_pred -EEEe---cCCCcceeEECCCCCeEEEEEcC
Q 022716 248 -HQIP---CRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 248 -~~~~---~~~~i~~~~~sp~~~~la~~~~d 274 (293)
.... ....|.++.+||||..+|.-..+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~ 132 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVED 132 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEec
Confidence 1222 12279999999999998887743
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.74 E-value=1.8 Score=34.33 Aligned_cols=87 Identities=9% Similarity=0.022 Sum_probs=52.7
Q ss_pred eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE
Q 022716 106 ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY 184 (293)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (293)
.....+.. +..++.+|++.+.+|.+++||+++.+..... ....-+.... ..+. .....+..+.++.+|.-
T Consensus 10 ~Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~--~~~~-----~~~~~i~~~~lt~~G~P 80 (219)
T PF07569_consen 10 VLGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP--VSDK-----SSSPNITSCSLTSNGVP 80 (219)
T ss_pred ecCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc--cccC-----CCCCcEEEEEEcCCCCE
Confidence 33444433 3456789999999999999999887654332 1000000000 0000 33456778888888887
Q ss_pred EEEecCCCcEEEEeCCCC
Q 022716 185 FAVGSADSLVSLWDISEM 202 (293)
Q Consensus 185 l~~gs~d~~i~iwd~~~~ 202 (293)
+++-+ +|....|+..-+
T Consensus 81 iV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 81 IVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EEEEe-CCCEEEeccccc
Confidence 77655 578899986544
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=91.26 E-value=8.5 Score=32.76 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=56.6
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEE-EeCC--CCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSL-WDIS--EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~i-wd~~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~ 247 (293)
..+..+.+.|++.++++|. .|.+.. +|-. +...+ .......+.++.+.|+++.++.| ..|.+.+-+...|..-
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 3456788888887766654 454432 2221 12222 12334678999999999877664 5577655434444332
Q ss_pred EE--Ee---cCCCcceeEECCCCCeEEEEE
Q 022716 248 HQ--IP---CRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 248 ~~--~~---~~~~i~~~~~sp~~~~la~~~ 272 (293)
.. .+ ....+.++.++|++..++.+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 21 11 112467888999877666554
No 424
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.71 E-value=0.031 Score=48.43 Aligned_cols=141 Identities=14% Similarity=0.222 Sum_probs=88.0
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEccccceeeeecccce
Q 022716 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIHRRKFGYE 151 (293)
Q Consensus 73 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~~~~~~~~~~~~~~ 151 (293)
.|-|++.++ +-++.+-.+..||-. ++........+....++|..++..+++ +-..+.+.+||+.+....+ ...+.
T Consensus 41 ~w~~e~~nl-avaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~gg- 116 (615)
T KOG2247|consen 41 RWRPEGHNL-AVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LESGG- 116 (615)
T ss_pred eEecCCCce-ehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-HhccC-
Confidence 566776664 456667777788743 333333334555667888887765544 4567899999987533211 11110
Q ss_pred eeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec
Q 022716 152 VNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231 (293)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 231 (293)
...-.-+.|++....++.|...|.+.|++....+.+-..-.|...+..+++.+.+. .+.++
T Consensus 117 ------------------~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~d 177 (615)
T KOG2247|consen 117 ------------------TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCD 177 (615)
T ss_pred ------------------cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecC
Confidence 00001246677788888898999999999877655544434777889999988764 44555
Q ss_pred CCCcE
Q 022716 232 EDLFI 236 (293)
Q Consensus 232 ~d~~i 236 (293)
.|..+
T Consensus 178 cd~~L 182 (615)
T KOG2247|consen 178 CDNTL 182 (615)
T ss_pred cHHHH
Confidence 55444
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=2.3 Score=41.27 Aligned_cols=144 Identities=13% Similarity=0.165 Sum_probs=85.1
Q ss_pred ccEEEEEECCCCCeEEEE--eCCCcEEEeecCCCCCCceeE-EEeeCC------cCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 21 KKVHSVAWNCTGTKLASG--SVDQTARVWHIEPHGHGKVKD-IELRGH------ADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~-~~~~~h------~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
-+|..+..++|+...+.- +.+-.|..||+..-....... ..+..| .....++.|+|.-....+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 466677777887665443 334478889986533222111 112222 12345678888765556667788888
Q ss_pred EEEeCCCCe-eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc--ceeeeec--ccceeeeeEEecCCCEE
Q 022716 92 RLWDARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRRK--FGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 92 ~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~--~~~~~~~--~~~~~~~v~~~~~~~~~ 164 (293)
++..+.... ....+.......+++|+|.|+++++|...|++.-|-..-. ..+.... -...+.+|.|-...+.+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 887654322 1222344556778999999999999999999888764322 1111111 13456777775544433
No 426
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.38 E-value=9 Score=31.58 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=72.9
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH-- 248 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~-- 248 (293)
.+.++.++|+.+.|.+......-.++=...|..++++.-. -....+|.+.-+|+++++--.++.+++..+.....+.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~ 166 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISA 166 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEec
Confidence 3678899999998888888887777766777777765321 2356778888899999888899999988877653211
Q ss_pred ---EEecCC------CcceeEECCCCCeEEEEEcC
Q 022716 249 ---QIPCRA------AMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 249 ---~~~~~~------~i~~~~~sp~~~~la~~~~d 274 (293)
.++... ..-.++|.|....|..+-..
T Consensus 167 ~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr 201 (316)
T COG3204 167 KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER 201 (316)
T ss_pred cceEEeccccCCCCcCceeeecCCCCceEEEEEcc
Confidence 222221 23469999988877777543
No 427
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.04 E-value=15 Score=33.54 Aligned_cols=75 Identities=12% Similarity=0.190 Sum_probs=46.1
Q ss_pred CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce--eEECCCCCe
Q 022716 192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS--VEWNPKYNL 267 (293)
Q Consensus 192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~--~~~sp~~~~ 267 (293)
|.|.-+|+.+++.+=..... .+...-...-.+..++.++.||.++.+|.++|+.+........+.+ +.|.-+|++
T Consensus 441 g~l~AiD~~tGk~~W~~~~~-~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~q 517 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKED-FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQ 517 (527)
T ss_pred eeEEEEeCCCCceeeEecCC-CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEE
Confidence 45777787777654333211 1211111222455777788899999999999999887766554433 444456644
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.00 E-value=15 Score=33.47 Aligned_cols=148 Identities=18% Similarity=0.270 Sum_probs=81.3
Q ss_pred ccEEEEEECCCCCeEE-EEe--CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC---CCEEEEEeCCCeEEEE
Q 022716 21 KKVHSVAWNCTGTKLA-SGS--VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH---ADLIATASGDKTVRLW 94 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~-s~~--~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~---~~~l~s~~~d~~i~vw 94 (293)
.+|+.++|. ||++++ |.- .+|.+++=| ...-|+-..|..+.|.|-. .--|+.......|.||
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-----------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-----------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC-----------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 589999997 787764 432 233333211 1123455668899998853 1134456778889999
Q ss_pred eCCCC-----ee--eeeeeecC----ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716 95 DARSG-----KC--SQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 95 d~~~~-----~~--~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
-+... +. .+..+... -+..+.|+|....|++=+....-.+.+.+.....-
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV------------------- 148 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV------------------- 148 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceE-------------------
Confidence 87522 21 12223322 24468899988877766654444444443221100
Q ss_pred EEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeC
Q 022716 164 FFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDI 199 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~ 199 (293)
..-....+.|.|.+|.+||+.|+++ ++.=.-++||-
T Consensus 149 kaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 149 KADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 0011234456677777777665544 22334566764
No 429
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.80 E-value=20 Score=35.54 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.0
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeec
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHI 49 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~ 49 (293)
-......++|+|..+.+|.|...|.|+++-.
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecc
Confidence 3457788999999999999999999999864
No 430
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.57 E-value=16 Score=33.25 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=78.1
Q ss_pred CeeEEEEcCCCCCEEEEEe--CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC----CEEEEEeCCCeEEEEEcccc-
Q 022716 68 SVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG----THIAVGNRDDELTILDVRKF- 140 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~l~d~~~~- 140 (293)
++..++|. ++..+++|.- .+|.+++=|. .. +.-..++..+.|.|-+ ..+++......+.+|.+.-.
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~v---iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KV---IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCCc---cE---eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 57788885 4445555542 1233322111 11 1223456778888753 25666667888999987421
Q ss_pred ----ceeee----e--cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-CCEEEEEee
Q 022716 141 ----KPIHR----R--KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFT 209 (293)
Q Consensus 141 ----~~~~~----~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-~~~~~~~~~ 209 (293)
+.+.. . .++.-.+.++| ||....|++-+....-.+++.. +..+++.-.
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVW---------------------HPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi 152 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVW---------------------HPKKAILTVLTARDVSVLPSVHCDSSRVKADI 152 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccc---------------------cCCCceEEEEecCceeEeeeeeeCCceEEEec
Confidence 11110 0 01112233444 4554444444443333344442 222333333
Q ss_pred ccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCC
Q 022716 210 KLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHT 243 (293)
Q Consensus 210 ~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~ 243 (293)
...+.|.+-+|.+||+.|+.+ +..-.-+|||-..
T Consensus 153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 456789999999999887555 3445578998653
No 431
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.54 E-value=3 Score=38.12 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=43.3
Q ss_pred CCCCeEEEEeCCCcEEEeecCCCC-CCc-eeEEEeeC--------------------CcCCeeEEEEcC---CCCCEEEE
Q 022716 30 CTGTKLASGSVDQTARVWHIEPHG-HGK-VKDIELRG--------------------HADSVDQLCWDP---KHADLIAT 84 (293)
Q Consensus 30 ~~~~~l~s~~~dg~v~iw~~~~~~-~~~-~~~~~~~~--------------------h~~~i~~~~~~~---~~~~~l~s 84 (293)
++...++.+..||.+...+..... .+. .....+.. -......++.++ .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 366788888899998888765411 011 11110000 012234444444 24578999
Q ss_pred EeCCCeEEEEeCCCCeeeeee
Q 022716 85 ASGDKTVRLWDARSGKCSQQA 105 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~~~~~~~ 105 (293)
.+.|+.+|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986554
No 432
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.37 E-value=2 Score=23.15 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=19.9
Q ss_pred CccccEEEEEECCCCCeEEEEeC-C--CcEEEe
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSV-D--QTARVW 47 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~-d--g~v~iw 47 (293)
-....-....|||||+.|+-.+. + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34557788999999999875554 4 555554
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.15 E-value=9.2 Score=29.92 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=58.8
Q ss_pred CCCeEEEEeC--CCcEEEeecCCCCCCceeEEEeeCCc---CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeee
Q 022716 31 TGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHA---DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA 105 (293)
Q Consensus 31 ~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~h~---~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 105 (293)
+|..+.+.+. ...|++||++... ...+..+...+ ..++.+ +..+..-.-.+|...++|.++-++...+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq--~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQ--EIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCce--EEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccc
Confidence 4566777666 3478889987432 11222222100 111111 1122222344677788888887777776
Q ss_pred eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceee
Q 022716 106 ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144 (293)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~ 144 (293)
...+.-..++ .|++.|+.+....++..-|.+++....
T Consensus 128 ~y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~ 164 (262)
T COG3823 128 SYEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELD 164 (262)
T ss_pred ccCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcc
Confidence 6666655554 456667776666677777777665433
No 434
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.85 E-value=9.5 Score=33.44 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=53.8
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC-eeEEEE------------c----CC
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCW------------D----PK 77 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~------------~----~~ 77 (293)
.+...+..+.+++.+|.+++.|+...=|.|.++|+.....-+ -++|..+. +..+.. . +.
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr----mWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR----MWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh----hhccCccceEEEEEeecccccccccccccCCCCc
Confidence 356667789999999999988888888999999986432111 11221111 000000 0 00
Q ss_pred C-CCEEEEEeCCCeEEEEeCCCCeeeeeeee
Q 022716 78 H-ADLIATASGDKTVRLWDARSGKCSQQAEL 107 (293)
Q Consensus 78 ~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 107 (293)
. --+++-+-.-|.|-||.++++..+..+..
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 0 01334455678899999998887665543
No 435
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.74 E-value=12 Score=30.78 Aligned_cols=155 Identities=14% Similarity=0.213 Sum_probs=89.7
Q ss_pred EEEEcCCCCCEEEEEeCCCe-EEEEeCCCCeeeeeeeec-C-ceE-EEEEcCCCCEEEEEeC-----CCeEEEEEcccc-
Q 022716 71 QLCWDPKHADLIATASGDKT-VRLWDARSGKCSQQAELS-G-ENI-NITYKPDGTHIAVGNR-----DDELTILDVRKF- 140 (293)
Q Consensus 71 ~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~l~~~~~-----d~~i~l~d~~~~- 140 (293)
.+.++|....-++-+-.-|+ ..++|....+....+... + +.. .-.|+|||.+|...-. -|.|-+||.+..
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 45566655444444544444 357788776654433211 1 111 2468999999887654 357889998742
Q ss_pred ceeeee-cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC--CEEEEecCCCcEEEEeCCCCEEEEEe--e--ccCC
Q 022716 141 KPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG--RYFAVGSADSLVSLWDISEMLCVRTF--T--KLEW 213 (293)
Q Consensus 141 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~gs~d~~i~iwd~~~~~~~~~~--~--~~~~ 213 (293)
..+.+. .++.....+.|.++|+.+.+..+. |..+|+. ..|=.-+++-++.+.|..++..+.+. . -+..
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGG-----IethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGG-----IETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCc-----eecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 222222 245667778888888877766553 2334432 12333445556677776666655432 2 2344
Q ss_pred CeeEEEEccCCCEEEEe
Q 022716 214 PVRTISFSHTGDYIASA 230 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~ 230 (293)
.++.++.-+||+.++-+
T Consensus 227 SiRHld~g~dgtvwfgc 243 (366)
T COG3490 227 SIRHLDIGRDGTVWFGC 243 (366)
T ss_pred ceeeeeeCCCCcEEEEE
Confidence 68888888888766554
No 436
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.66 E-value=24 Score=34.15 Aligned_cols=265 Identities=14% Similarity=0.155 Sum_probs=131.2
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC--CCC---EEEEEeCCCeEEEEe
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HAD---LIATASGDKTVRLWD 95 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~--~~~---~l~s~~~d~~i~vwd 95 (293)
..++....+.+..+++.++.++.+-..+.+... .....-..-+..|.|+.++|. .++ +++.|.++..+.+--
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~ 564 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILT 564 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccc---eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEE
Confidence 345555555556677777776766666665432 111111122456888888875 333 788888877665543
Q ss_pred C-CCCeeeeeeeecC--ceEE---EEEcCCCCEEEEEeCCCeEEEEEc--cccceeeee--cccce-eeeeEEecCCCEE
Q 022716 96 A-RSGKCSQQAELSG--ENIN---ITYKPDGTHIAVGNRDDELTILDV--RKFKPIHRR--KFGYE-VNEIAWNMTGEMF 164 (293)
Q Consensus 96 ~-~~~~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~d~~i~l~d~--~~~~~~~~~--~~~~~-~~~v~~~~~~~~~ 164 (293)
. .+........... .+.+ ..+--|..+|.++..||.+..+-+ .+......+ .+|.. +.-..++..+...
T Consensus 565 ~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~ 644 (1096)
T KOG1897|consen 565 FLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTA 644 (1096)
T ss_pred ECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceE
Confidence 3 2322222222222 2333 344456789999999998876644 333221111 12211 1111122222111
Q ss_pred EEecCCCCE--E----EEE--------------EC-CC-CCEEEEecCCCcEEEEeCCCCE--EEEEeeccCCCeeEEEE
Q 022716 165 FLTTGNAGC--Y----CIA--------------ID-PM-GRYFAVGSADSLVSLWDISEML--CVRTFTKLEWPVRTISF 220 (293)
Q Consensus 165 ~~~~~~~~~--~----~~~--------------~~-~~-~~~l~~gs~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~ 220 (293)
.+.+.+-+. + .+. |+ +. ...+++++ .+.+.+..+..-. -++++ ....+++.+++
T Consensus 645 vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~ 722 (1096)
T KOG1897|consen 645 VFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICY 722 (1096)
T ss_pred EEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeee-cCCCChhheEe
Confidence 111111110 0 011 11 11 23344443 4567777655422 23333 23346778888
Q ss_pred ccCCCEEEEecC-----------C---CcEEEEEcCCCCEEEEEec-----CCCcceeEECCC-CCeEEEEEcCCCCCCC
Q 022716 221 SHTGDYIASASE-----------D---LFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPK-YNLLAYAGDDKNKYQA 280 (293)
Q Consensus 221 sp~~~~l~s~s~-----------d---~~i~iw~~~~~~~~~~~~~-----~~~i~~~~~sp~-~~~la~~~~d~~~~~~ 280 (293)
.+....+.+.+. . ..++++|-++.+.++..+. .-+|.++.|..| +.++++|..- +|..
T Consensus 723 q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~--v~Pd 800 (1096)
T KOG1897|consen 723 QESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL--VYPD 800 (1096)
T ss_pred cccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe--eccC
Confidence 875555444332 1 1356777777665543322 235777889887 6777777632 2322
Q ss_pred ----CcceEEEEeeec
Q 022716 281 ----DEGVFRIYGFEN 292 (293)
Q Consensus 281 ----~~~~~~~~~~~~ 292 (293)
..|-+-||.||.
T Consensus 801 e~ep~~GRIivfe~~e 816 (1096)
T KOG1897|consen 801 ENEPVNGRIIVFEFEE 816 (1096)
T ss_pred CCCcccceEEEEEEec
Confidence 236666777764
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=87.51 E-value=21 Score=32.12 Aligned_cols=101 Identities=7% Similarity=-0.016 Sum_probs=51.9
Q ss_pred CCCEEEEecCCC---cEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE--EEEec-
Q 022716 181 MGRYFAVGSADS---LVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV--HQIPC- 252 (293)
Q Consensus 181 ~~~~l~~gs~d~---~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~--~~~~~- 252 (293)
++++.+.|+.++ .+..||.++..-... +....... .+..-+++..+.|+ .+.++|..+.+-. ..++.
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~--~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS--CALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc--eEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC
Confidence 577777777553 477888765433221 11111111 11234566666664 4677888765432 22222
Q ss_pred CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 253 RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 253 ~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
+.....+.. ++.+++.||.++... ...+.+|+.+
T Consensus 437 r~~~~~~v~--~~~IYviGG~~~~~~---~~~ve~Yd~~ 470 (480)
T PHA02790 437 RDNPELIIV--DNKLLLIGGFYRGSY---IDTIEVYNNR 470 (480)
T ss_pred ccccEEEEE--CCEEEEECCcCCCcc---cceEEEEECC
Confidence 112222223 678899998764322 1356677665
No 438
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.32 E-value=3.1 Score=22.37 Aligned_cols=32 Identities=25% Similarity=0.197 Sum_probs=20.0
Q ss_pred eeccCCCeeEEEEccCCCEEEEec-CC--CcEEEE
Q 022716 208 FTKLEWPVRTISFSHTGDYIASAS-ED--LFIDIS 239 (293)
Q Consensus 208 ~~~~~~~v~~l~~sp~~~~l~s~s-~d--~~i~iw 239 (293)
+......-..-.|||||++|+-.+ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455677789999999886665 44 555554
No 439
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.86 E-value=13 Score=29.10 Aligned_cols=170 Identities=12% Similarity=0.138 Sum_probs=82.7
Q ss_pred CCEEEEEeC--CCeEEEEeCCCCeeeeeeeecC-ceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeee
Q 022716 79 ADLIATASG--DKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNE 154 (293)
Q Consensus 79 ~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~ 154 (293)
+.++.|.+. ...|++||+.+++......... .+..=-...-|..+ ...-.++.-..+|.++.+.+.+..+..+-+.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWg 135 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWG 135 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCccee
Confidence 456666655 5669999999888766544441 11110011112222 2223467777788888776666544333221
Q ss_pred eEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--cCC---CeeEEEEccCCCEEEE
Q 022716 155 IAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--LEW---PVRTISFSHTGDYIAS 229 (293)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~~~---~v~~l~~sp~~~~l~s 229 (293)
+ ..++.-|+.++...+++.-|.++.....+..- ... .++.+.| -+|...|-
T Consensus 136 L-----------------------t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyAN 191 (262)
T COG3823 136 L-----------------------TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYAN 191 (262)
T ss_pred e-----------------------ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEe
Confidence 1 12333344444444555556554332222111 111 1223333 23433333
Q ss_pred ecCCCcEEEEEcCCCCEEEEEec-------------CCCcceeEECCCCCeEEEEE
Q 022716 230 ASEDLFIDISNVHTGRTVHQIPC-------------RAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 230 ~s~d~~i~iw~~~~~~~~~~~~~-------------~~~i~~~~~sp~~~~la~~~ 272 (293)
.=.+..|-.-+.++|+.+.-+.. ..-.|.|++-|++..|...|
T Consensus 192 Vw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 192 VWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33334444445566655433321 12357899999886665555
No 440
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.54 E-value=14 Score=32.29 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=56.3
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEeCCC--CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC-----E
Q 022716 174 YCIAIDPMGRYFAVGSADSLVSLWDISE--MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR-----T 246 (293)
Q Consensus 174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~-----~ 246 (293)
..+...+++.+++.|..-..++-||--. ...+. ......+.++.+.+++..++.+ .+|.+..- ...++ .
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~ 317 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFD 317 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccc
Confidence 3455678888777776544344454322 12221 2234568999999999887665 55555443 33332 2
Q ss_pred EEEEec---CCCcceeEECCCCCeEEEEEc
Q 022716 247 VHQIPC---RAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 247 ~~~~~~---~~~i~~~~~sp~~~~la~~~~ 273 (293)
...... ...+.++.|.++++.+++|..
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~ 347 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGS 347 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECC
Confidence 222222 234788999998888777764
No 441
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.52 E-value=22 Score=31.30 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=35.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 022716 80 DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~ 137 (293)
+++..=+-||.+.+++-+.--....+...-.+-.+.|.+.-..+++++++..+..+..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 4455556677777776543322222222222345777787788999988888888754
No 442
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.21 E-value=24 Score=31.44 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEccc
Q 022716 109 GENINITYKPDGTHIAVGNRDDELTILDVRK 139 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~ 139 (293)
..+..|+|.|||+.|++-...|+|++++..+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPET 60 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence 3567899999997776665469999987554
No 443
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.13 E-value=34 Score=32.26 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=68.1
Q ss_pred CCCEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEe-cCCCEEEEecCCCCEEEEEEC--CCCCEEEEecCCCcE
Q 022716 119 DGTHIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWN-MTGEMFFLTTGNAGCYCIAID--PMGRYFAVGSADSLV 194 (293)
Q Consensus 119 ~~~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~gs~d~~i 194 (293)
....|+.+..||.|.+|.++.-.. +....- +.... .+ ..-...+...-...++.++++ ...+++|+++....|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~--~~~~~-~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSE--DNDSG-FSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhcc--ccccc-cccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceE
Confidence 345678888899999997643110 000000 00000 00 000001222233467788988 888999999999989
Q ss_pred EEEeCCCC-EEEEEe--eccCCCeeEEEEccCC-----C-EEEEecCCCcEEEEEc
Q 022716 195 SLWDISEM-LCVRTF--TKLEWPVRTISFSHTG-----D-YIASASEDLFIDISNV 241 (293)
Q Consensus 195 ~iwd~~~~-~~~~~~--~~~~~~v~~l~~sp~~-----~-~l~s~s~d~~i~iw~~ 241 (293)
.+|-.... ...... ..+.--|.+|+|-++. . +|++++=.|.+.+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88854331 111111 1234468899997653 2 7888888999888777
No 444
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=85.01 E-value=18 Score=28.94 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=60.1
Q ss_pred EEEECCCCCE-EEEecCCCcEEEEe--CCCCE-----EEEEeecc---C-CCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 175 CIAIDPMGRY-FAVGSADSLVSLWD--ISEML-----CVRTFTKL---E-WPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 175 ~~~~~~~~~~-l~~gs~d~~i~iwd--~~~~~-----~~~~~~~~---~-~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
.++|+.+.+. ..+-+.+-+|.-|| +.++. .+..++.. + .....+++..+|.+.++.=.-++|...|..
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 4566666543 45556677787787 33332 22222221 1 122345556678877777788899999999
Q ss_pred CCCEEEEEec-CCCcceeEECC-CCCeEEEEE
Q 022716 243 TGRTVHQIPC-RAAMNSVEWNP-KYNLLAYAG 272 (293)
Q Consensus 243 ~~~~~~~~~~-~~~i~~~~~sp-~~~~la~~~ 272 (293)
+|+.+..+.. ...|++++|-- +...|.++.
T Consensus 242 tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9998876643 44699999964 445544443
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.30 E-value=26 Score=30.22 Aligned_cols=103 Identities=11% Similarity=0.019 Sum_probs=50.6
Q ss_pred ccEEEEEECCCCCeEEEEe-----------CCC-cEEEeecCCCCCCceeE-EEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 21 KKVHSVAWNCTGTKLASGS-----------VDQ-TARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~-----------~dg-~v~iw~~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
.....++|.++|+.+++-. ..+ .|.+++-... .+.... ..+.........+++.+.+ ++++ ..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg-dG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADG-DGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC-CCCcceeEEeecCCCCccceeEecCC--EEEe-CC
Confidence 4567899999999777642 223 6666643221 122111 1122222334667776653 5553 33
Q ss_pred CCeEEEEeCCCC-----eeeee---eeec-----CceEEEEEcCCCCEEEEEe
Q 022716 88 DKTVRLWDARSG-----KCSQQ---AELS-----GENINITYKPDGTHIAVGN 127 (293)
Q Consensus 88 d~~i~vwd~~~~-----~~~~~---~~~~-----~~~~~~~~~~~~~~l~~~~ 127 (293)
....++.|.... +.... +... .....+++.|||+..++.+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 333334454321 11111 1111 1134688999998766555
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.10 E-value=23 Score=29.51 Aligned_cols=242 Identities=13% Similarity=0.176 Sum_probs=129.0
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---CCceeEEEeeC-----CcCCeeEEEEcCCC-----------CCEE
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRG-----HADSVDQLCWDPKH-----------ADLI 82 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---~~~~~~~~~~~-----h~~~i~~~~~~~~~-----------~~~l 82 (293)
--..++|+|.+.+-++...-+...+||..... .........+. -....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45689999999887877778999999986321 11112222221 12234555554321 2336
Q ss_pred EEEeCCCeEEEEeCCCCee---eeeeeec----CceE-EEEEc--CCCCEEEEE-eCCCeEEEEEccccceeeee-----
Q 022716 83 ATASGDKTVRLWDARSGKC---SQQAELS----GENI-NITYK--PDGTHIAVG-NRDDELTILDVRKFKPIHRR----- 146 (293)
Q Consensus 83 ~s~~~d~~i~vwd~~~~~~---~~~~~~~----~~~~-~~~~~--~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~----- 146 (293)
+.+++||+|.=|...-+.. ....... +.+. .+++. ..+.+|... -..++|.++|-. +.++...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCccC
Confidence 7789999999998533322 1112111 2222 24443 223444433 357788888742 2221110
Q ss_pred ---cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee--ccCCCeeEEEEc
Q 022716 147 ---KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTISFS 221 (293)
Q Consensus 147 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s 221 (293)
.-+.....++ +..+.++. +-..-+++...=+.|..-|.|.+||+.-. .++.+. +.-+....|+..
T Consensus 183 P~iPagyAPFnIq-nig~~lyV--------tYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 183 PALPAGYAPFNVQ-NLGGTLYV--------TYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred CCCCCCCCCcceE-EECCeEEE--------EEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeC
Confidence 0000000010 11111111 11122344444455666788999997544 344442 222345567776
Q ss_pred c------CCCEEEEecCCCcEEEEEcCCCCEEEEEecC-------CCcceeEECC------CCCeEEEEEcC
Q 022716 222 H------TGDYIASASEDLFIDISNVHTGRTVHQIPCR-------AAMNSVEWNP------KYNLLAYAGDD 274 (293)
Q Consensus 222 p------~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-------~~i~~~~~sp------~~~~la~~~~d 274 (293)
| .|.+|+---.||.|..+|..+++.+.++... ..++.|+|.. ...++.+++-+
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPD 324 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCC
Confidence 5 4567777678999999999999877766432 2456788865 23455566544
No 447
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.07 E-value=25 Score=29.06 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=65.3
Q ss_pred EECCCCCEEEEec-----CCCcEEEEeCCCC-EEEEEeeccCCCeeEEEEccCCCEEEEecC------C-----------
Q 022716 177 AIDPMGRYFAVGS-----ADSLVSLWDISEM-LCVRTFTKLEWPVRTISFSHTGDYIASASE------D----------- 233 (293)
Q Consensus 177 ~~~~~~~~l~~gs-----~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------d----------- 233 (293)
.|+|+|.+|-..- ..|.|-+||.+.+ ..+.++..|.-....+.+.+||+.|+.+.. |
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 3566666654432 2377999998753 456678888888899999999999987654 1
Q ss_pred -CcEEEEEcCCCCEEE--EEe---cCCCcceeEECCCCCeEEEEEcC
Q 022716 234 -LFIDISNVHTGRTVH--QIP---CRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 234 -~~i~iw~~~~~~~~~--~~~---~~~~i~~~~~sp~~~~la~~~~d 274 (293)
-.+.+-|-.+|..+. .++ .+-+|+-++..++|...+-+.-.
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 123455656666553 333 23467788888888777666543
No 448
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.81 E-value=28 Score=29.47 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=48.0
Q ss_pred CeeEEEEccCCCEEEEecCC------CcEEEEEcCCCCEEEEE--e--------------cCCCcceeEECCCCCeEEEE
Q 022716 214 PVRTISFSHTGDYIASASED------LFIDISNVHTGRTVHQI--P--------------CRAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d------~~i~iw~~~~~~~~~~~--~--------------~~~~i~~~~~sp~~~~la~~ 271 (293)
...+|++.++|.++++.=.+ -.|..++.. |+.+..+ + .....-+++++|+|..|.++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 56688998888888877666 778888865 6554333 1 11245579999999965555
Q ss_pred EcCCCCCCC-------CcceEEEEeee
Q 022716 272 GDDKNKYQA-------DEGVFRIYGFE 291 (293)
Q Consensus 272 ~~d~~~~~~-------~~~~~~~~~~~ 291 (293)
-.. -+++. .....||+.++
T Consensus 165 ~E~-~l~~d~~~~~~~~~~~~ri~~~d 190 (326)
T PF13449_consen 165 MES-PLKQDGPRANPDNGSPLRILRYD 190 (326)
T ss_pred ECc-cccCCCcccccccCceEEEEEec
Confidence 432 22222 22347888776
No 449
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.56 E-value=48 Score=31.90 Aligned_cols=169 Identities=15% Similarity=0.138 Sum_probs=86.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeeeeeecCce-------------EEEEEcC--CCCEEEEEeC----------CCeEEE
Q 022716 80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN-------------INITYKP--DGTHIAVGNR----------DDELTI 134 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~----------d~~i~l 134 (293)
..++.++.|+.+.-.|.++|+....+...+.+ ....-.| .+..+++|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 36777888999999999999876544322221 0011111 1345666643 578999
Q ss_pred EEccccceeeeeccccee-eeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec------------------CCCcEE
Q 022716 135 LDVRKFKPIHRRKFGYEV-NEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS------------------ADSLVS 195 (293)
Q Consensus 135 ~d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs------------------~d~~i~ 195 (293)
+|.++.+.+-+...+... ....+ .++.+.. .....-...+++++...+..+. -.+.|.
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~--~g~~~~~-gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPA--PGETYTR-NTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCC--CCCEecc-CCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999888765443221000 00000 1111110 0000001122222222222111 134566
Q ss_pred EEeCCCCEEEEEeec--cCC-------CeeEEEEcc-CCC---EEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716 196 LWDISEMLCVRTFTK--LEW-------PVRTISFSH-TGD---YIASASEDLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 196 iwd~~~~~~~~~~~~--~~~-------~v~~l~~sp-~~~---~l~s~s~d~~i~iw~~~~~~~~~~~~ 251 (293)
-.|.++++..=.++. |+. +..-+.+.. +|+ .++.++.+|.+++.|-++|+.+....
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 677777765433332 221 122233433 563 78999999999999999999876543
No 450
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.43 E-value=30 Score=30.58 Aligned_cols=102 Identities=10% Similarity=0.083 Sum_probs=59.8
Q ss_pred cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE----EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 168 TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR----TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~----~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
...+++.++.|++|.+.+|+--.|++|.+++....+... +.+.-...|....|+.+ +-+|.-+..| +.+|.+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 345678899999999999999999999999873322111 11111234677777655 4455544444 34444332
Q ss_pred CC-EEEE-EecCCCcceeEECCCCCeEEEE
Q 022716 244 GR-TVHQ-IPCRAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 244 ~~-~~~~-~~~~~~i~~~~~sp~~~~la~~ 271 (293)
-+ .++- ..+...|+--.|.|+-+.+..+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeee
Confidence 21 1211 1233457777888877653333
No 451
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.84 E-value=16 Score=27.71 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=22.1
Q ss_pred CeeEEEEcCCC-----CCEEEEEeCCCeEEEEeCC
Q 022716 68 SVDQLCWDPKH-----ADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 68 ~i~~~~~~~~~-----~~~l~s~~~d~~i~vwd~~ 97 (293)
.+..++|+|.+ .-+|+....++.+.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 67788898854 2367777888888888754
No 452
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=81.14 E-value=29 Score=32.77 Aligned_cols=160 Identities=9% Similarity=0.046 Sum_probs=88.6
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee--EEEe--e----------C----CcCCeeEEEEcC-CCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK--DIEL--R----------G----HADSVDQLCWDP-KHA 79 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~--~~~~--~----------~----h~~~i~~~~~~~-~~~ 79 (293)
.++-.+++. +.++|+.|. .+.|.||+++.-...... ...+ . . -.-.|+.+...- -+.
T Consensus 39 fKNNLtals---q~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~ 114 (717)
T PF08728_consen 39 FKNNLTALS---QRNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGE 114 (717)
T ss_pred cccceeEEe---cCCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCe
Confidence 445555554 266777755 799999998643221100 0000 0 0 011245444322 234
Q ss_pred CEEEEEeCCCeEEEEeCC-------CC-------------eeeeeeeecCceEEEEEc--CCCCEEEEEeCCCeEEEEEc
Q 022716 80 DLIATASGDKTVRLWDAR-------SG-------------KCSQQAELSGENINITYK--PDGTHIAVGNRDDELTILDV 137 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~-------~~-------------~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~i~l~d~ 137 (293)
+.|+.|..||.|.+|.++ .. ++...+.......+++++ ...+.+|+++....|.++-.
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 678889999999999641 00 011233445566778887 77788888888888888765
Q ss_pred cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC-----CC-EEEEecCCCcEEEEeC
Q 022716 138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM-----GR-YFAVGSADSLVSLWDI 199 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~l~~gs~d~~i~iwd~ 199 (293)
....... ....+ ......|.+|+|-++ |. .|++++-.|.+.+|++
T Consensus 195 ~l~~~r~--~~~~s---------------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERF--YHVPS---------------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecccccc--ccccc---------------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4321000 00000 002233445555443 32 7888899999999887
No 453
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.31 E-value=42 Score=29.77 Aligned_cols=125 Identities=14% Similarity=0.198 Sum_probs=67.6
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
+...+.-+++|.++.||+|.+.||.--.|.+|.+.+............+.+.-+..|....|... .+ ++-.+ +.-+-
T Consensus 59 iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e-~A~i~-~~G~e 135 (657)
T KOG2377|consen 59 ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TE-IAFIT-DQGIE 135 (657)
T ss_pred ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-ee-EEEEe-cCCeE
Confidence 33344556799999999999999999999999999875322111111112223445777888653 33 32222 33345
Q ss_pred EEeCCCCe-eeeeee-ecCceEEEEEcCCCCEEEEEe--CCCeEEEEEcccc
Q 022716 93 LWDARSGK-CSQQAE-LSGENINITYKPDGTHIAVGN--RDDELTILDVRKF 140 (293)
Q Consensus 93 vwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~ 140 (293)
+|-+.... .++..+ ....+.-..|.++-+.++.++ ..+.+.-+-++..
T Consensus 136 ~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 136 FYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 55443322 111112 223334456777766544443 3344444444433
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.12 E-value=21 Score=25.73 Aligned_cols=92 Identities=11% Similarity=0.083 Sum_probs=54.4
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEeecCCCCCC---ceeEEEeeCCcCCeeEEEEcC----CCCCEEEEEeCCCeEEEEeC
Q 022716 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDP----KHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 24 ~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~h~~~i~~~~~~~----~~~~~l~s~~~d~~i~vwd~ 96 (293)
..-.|......|+.+..-|+|.|.+....... ....+.+-.-...|++++--+ +..+.|+- +....+..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~Lli-Gt~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLI-GTQTSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEE-eccceEEEEEc
Confidence 34466777778999999999999976532110 001122223355677765433 23456654 45667889999
Q ss_pred CCCeeeeeeeecCceEEEEE
Q 022716 97 RSGKCSQQAELSGENINITY 116 (293)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ 116 (293)
....-+...+.+..+.++.+
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~ 100 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVI 100 (136)
T ss_pred ccCchhhhhhCccceeEEEE
Confidence 77665544455555555554
No 455
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=79.03 E-value=4.7 Score=38.36 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.6
Q ss_pred ECCCCCeEEEEeCCCcEEEeecCC
Q 022716 28 WNCTGTKLASGSVDQTARVWHIEP 51 (293)
Q Consensus 28 ~s~~~~~l~s~~~dg~v~iw~~~~ 51 (293)
.||||+.+|.++.||.++.|.+.-
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeee
Confidence 689999999999999999998753
No 456
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=78.96 E-value=63 Score=31.08 Aligned_cols=81 Identities=14% Similarity=0.078 Sum_probs=50.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee----cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE
Q 022716 110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185 (293)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (293)
.+.++....-+..++....||+|.++|-.+.+.+... .....+..+ .+.-+.+... ..+..++|+|.+.-+
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~----~~~Gf~fp~~-~~~~~vafSPt~c~~ 335 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSL----FQAGFHFPCI-QPPLHVAFSPTMCSL 335 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccc----cccccccccC-CCCceEEECcccceE
Confidence 3455666667778999999999999998877655444 111111110 0000111111 144568899999999
Q ss_pred EEecCCCcEE
Q 022716 186 AVGSADSLVS 195 (293)
Q Consensus 186 ~~gs~d~~i~ 195 (293)
+.-..+|.+.
T Consensus 336 v~~~~~~~~~ 345 (753)
T PF11635_consen 336 VQIDEDGKTK 345 (753)
T ss_pred EEEecCCCce
Confidence 9999998866
No 457
>PRK10115 protease 2; Provisional
Probab=78.76 E-value=61 Score=30.79 Aligned_cols=111 Identities=11% Similarity=0.001 Sum_probs=61.6
Q ss_pred ccEEEEEECCCCCeEEEEeC-C----CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-----Ce
Q 022716 21 KKVHSVAWNCTGTKLASGSV-D----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----KT 90 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~-d----g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-----~~ 90 (293)
-.+..+.+||||++|+.+.. + ..+++-|+.+.. .....+.+ .-..+.|.+++..++++.-.+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~---~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN---WYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC---CCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 45778899999998876533 2 356677775321 00011111 114588988766677765432 35
Q ss_pred EEEEeCCCCe--eeeeeeec-CceE-EEEEcCCCCEEEEEeC---CCeEEEEEc
Q 022716 91 VRLWDARSGK--CSQQAELS-GENI-NITYKPDGTHIAVGNR---DDELTILDV 137 (293)
Q Consensus 91 i~vwd~~~~~--~~~~~~~~-~~~~-~~~~~~~~~~l~~~~~---d~~i~l~d~ 137 (293)
|..+++.++. -...++.. .... ....+.++++++..+. ++.+.+++.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 7777887762 22222221 2122 3333457887665543 356778774
No 458
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.32 E-value=50 Score=29.51 Aligned_cols=107 Identities=9% Similarity=0.056 Sum_probs=60.9
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE--EEEEee----c-cCCCeeEEEEccCC------CEEEEe--c--
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML--CVRTFT----K-LEWPVRTISFSHTG------DYIASA--S-- 231 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~~~----~-~~~~v~~l~~sp~~------~~l~s~--s-- 231 (293)
+-.....+++.|+++.|++--..|.|++++...+. .+..+. . -+.....|+++|+- ++|... .
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 33455788999999877766557999999865442 121111 1 24568899999884 233222 1
Q ss_pred ------CCCcEEEEEcCCC-------CEEE-EEecC--CCcceeEECCCCCeEEEEEcCC
Q 022716 232 ------EDLFIDISNVHTG-------RTVH-QIPCR--AAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 232 ------~d~~i~iw~~~~~-------~~~~-~~~~~--~~i~~~~~sp~~~~la~~~~d~ 275 (293)
....|.-+..... +.+. .++.. -.-..|.|.|||.++++.|+.+
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 1223444443311 1111 12111 1134688999999888777653
No 459
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.84 E-value=20 Score=23.78 Aligned_cols=45 Identities=13% Similarity=-0.028 Sum_probs=27.5
Q ss_pred ecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716 230 ASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 230 ~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
+..+|.+..||..+++..--+..-.--+.|+.+|++.+++.+-..
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 345677788888887642222222235789999999998888643
No 460
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.53 E-value=21 Score=23.74 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=28.2
Q ss_pred EecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716 187 VGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 187 ~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 230 (293)
.+..+|.+.-||..+++..-.+.+.. -.+.|+++||+.+|+.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEEE
Confidence 34556889999999886543444443 56999999999976554
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=73.48 E-value=64 Score=29.16 Aligned_cols=60 Identities=25% Similarity=0.323 Sum_probs=41.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRK 139 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~ 139 (293)
+.+++.||.-|-|++||--.-+....+. +...+..+..+.+|+++++.+ ...+.+.|++-
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVPI 633 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEeccc
Confidence 4689999999999999953322222222 344556788889999887765 56777888753
No 462
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.96 E-value=48 Score=26.78 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=58.9
Q ss_pred EEECCCCCEEEEecC-C--CcEEEEeCCC----CE--E-EEEeeccCCCeeEEEEccCCCEEEEecCCCc-EEEEEcCC-
Q 022716 176 IAIDPMGRYFAVGSA-D--SLVSLWDISE----ML--C-VRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHT- 243 (293)
Q Consensus 176 ~~~~~~~~~l~~gs~-d--~~i~iwd~~~----~~--~-~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~- 243 (293)
-++-++|+++.+|+. + ..+++++... .. . ...+...++-.+ ...-|||+.|+.|+.+.. ..+|....
T Consensus 72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT-~~~L~DG~vlIvGG~~~~t~E~~P~~~~ 150 (243)
T PF07250_consen 72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT-ATTLPDGRVLIVGGSNNPTYEFWPPKGP 150 (243)
T ss_pred cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcccc-ceECCCCCEEEEeCcCCCcccccCCccC
Confidence 356789999999875 3 3588887543 11 1 112333333333 334589999998887754 45665432
Q ss_pred C-CEEE--EEec---CCCc---ceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 244 G-RTVH--QIPC---RAAM---NSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 244 ~-~~~~--~~~~---~~~i---~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
. .... .+.. ..+. .-+...|+|++|..+..+..++-..
T Consensus 151 ~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~ 197 (243)
T PF07250_consen 151 GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYK 197 (243)
T ss_pred CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCC
Confidence 1 1111 1110 1111 1356689999999998776555333
No 463
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=72.51 E-value=63 Score=27.88 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=61.8
Q ss_pred ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee--ecccce---eeeeEEecCCCEEEEecCCCCEEEEEECCC
Q 022716 107 LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYE---VNEIAWNMTGEMFFLTTGNAGCYCIAIDPM 181 (293)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~--~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (293)
..+.+..++|...+..|+++..---+...+......... ...+.. .+.+.-++.+..++..+.. .+++-
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSs------k~~~r 186 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSS------KYDRR 186 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEecccc------ccchh
Confidence 346778899998886666664433333334433321110 001111 1223333333333322211 11111
Q ss_pred CC--EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec--CCCcEEEE
Q 022716 182 GR--YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--EDLFIDIS 239 (293)
Q Consensus 182 ~~--~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~d~~i~iw 239 (293)
.- .++.+..+|.+.-||..+... +.+...-.-.+.++.|||+.+++.+- .-..-+.|
T Consensus 187 d~~~a~l~g~~~GRl~~YD~~tK~~-~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 187 DFVFAALEGDPTGRLFRYDPSTKVT-KVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred heEEeeecCCCccceEEecCcccch-hhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence 11 134455678888888766542 23322223568899999999886663 33334555
No 464
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=72.22 E-value=54 Score=27.64 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=37.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR 128 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 128 (293)
+.+.++=+..|.+..+|.++|+........+....++|. |.++++|.+
T Consensus 213 grLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 213 GKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence 457777777888888888888777777778888888887 888887764
No 465
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.79 E-value=93 Score=29.52 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=30.2
Q ss_pred CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716 213 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 213 ~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~ 250 (293)
..+..+..||+.++||-=...|.|.+-+....+....+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 45777899999999999999999988887766554433
No 466
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=71.10 E-value=11 Score=18.63 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=16.5
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEe
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVW 47 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw 47 (293)
.+.++.+++|+.+++=+..+.|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777766666666666553
No 467
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=70.93 E-value=7.9 Score=36.21 Aligned_cols=54 Identities=13% Similarity=-0.008 Sum_probs=37.5
Q ss_pred CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCC
Q 022716 212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY 265 (293)
Q Consensus 212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~ 265 (293)
+..++++.-+|.|+-+++++.|+.|.+++..+.+.-+......|--.+.|...|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg 67 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG 67 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc
Confidence 346788888899999999999999999998765542222223344455555544
No 468
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=69.53 E-value=46 Score=25.14 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.6
Q ss_pred CEEEEEECCCC------CEEEEecCCCcEEEEeCCC
Q 022716 172 GCYCIAIDPMG------RYFAVGSADSLVSLWDISE 201 (293)
Q Consensus 172 ~~~~~~~~~~~------~~l~~gs~d~~i~iwd~~~ 201 (293)
.+..++|+|.| -.|++-+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 67788999843 3688889999999997643
No 469
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=68.63 E-value=67 Score=26.64 Aligned_cols=72 Identities=11% Similarity=0.196 Sum_probs=39.0
Q ss_pred EEEEEECCCCCEEEEec------CCCcEEEEeCCCCEEEEEeec-----cCCCeeEEEEcc-CC-CEEEEec-C--CCcE
Q 022716 173 CYCIAIDPMGRYFAVGS------ADSLVSLWDISEMLCVRTFTK-----LEWPVRTISFSH-TG-DYIASAS-E--DLFI 236 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs------~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp-~~-~~l~s~s-~--d~~i 236 (293)
+..+.|..+.+.++.|. ....+..||..+..- ..+.. ...+|.++.+.. ++ +..+.|. . +..|
T Consensus 39 V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l 117 (281)
T PF12768_consen 39 VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFL 117 (281)
T ss_pred EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceE
Confidence 44555554445555543 456788899877643 22222 346888887743 33 3444443 2 3447
Q ss_pred EEEEcCCCC
Q 022716 237 DISNVHTGR 245 (293)
Q Consensus 237 ~iw~~~~~~ 245 (293)
..||-..-.
T Consensus 118 ~~~dGs~W~ 126 (281)
T PF12768_consen 118 MKYDGSSWS 126 (281)
T ss_pred EEEcCCceE
Confidence 777654433
No 470
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=68.25 E-value=69 Score=26.63 Aligned_cols=195 Identities=14% Similarity=0.168 Sum_probs=93.4
Q ss_pred EEEEeCCCCeeeeeeeecCc-------eEEEEEcCCC-----CE-EEEEeCCCeEEEEEccccceeeeeccc--ceeeee
Q 022716 91 VRLWDARSGKCSQQAELSGE-------NINITYKPDG-----TH-IAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEI 155 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~-----~~-l~~~~~d~~i~l~d~~~~~~~~~~~~~--~~~~~v 155 (293)
+.+||+.+++.++.+.++.. ...+++.... .+ .++-.....+.++|+++.+..+..... ......
T Consensus 36 Lv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~ 115 (287)
T PF03022_consen 36 LVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAG 115 (287)
T ss_dssp EEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSE
T ss_pred EEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecccc
Confidence 45667777776666554432 2345554311 23 333344568999999887654443221 111112
Q ss_pred EEecCCCEEEEecCCCCEEEEEECC---CCCEEEEecCCCcEEEEeC-----CCCE---------EEEEeeccC-CCeeE
Q 022716 156 AWNMTGEMFFLTTGNAGCYCIAIDP---MGRYFAVGSADSLVSLWDI-----SEML---------CVRTFTKLE-WPVRT 217 (293)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~gs~d~~i~iwd~-----~~~~---------~~~~~~~~~-~~v~~ 217 (293)
.+...+..+... ..+..++.+| +++.|--+...+ -++|.+ ++.. .++.+ +.. .....
T Consensus 116 ~~~i~g~~~~~~---dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g 190 (287)
T PF03022_consen 116 PFTIGGESFQWP---DGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDG 190 (287)
T ss_dssp EEEETTEEEEET---TSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECE
T ss_pred ceeccCceEecC---CCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCce
Confidence 222233222221 2255566655 444443332221 112221 1110 01111 111 35567
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCC---EEEEEec-C---CCcceeEECC--CCCeEEEEEcC-CCCC---CCCcce
Q 022716 218 ISFSHTGDYIASASEDLFIDISNVHTGR---TVHQIPC-R---AAMNSVEWNP--KYNLLAYAGDD-KNKY---QADEGV 284 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~---~~~~~~~-~---~~i~~~~~sp--~~~~la~~~~d-~~~~---~~~~~~ 284 (293)
+++.++|...++--..+.|..|+..+.- ....+.. . .....+++.+ +|.+.+.++.= +... -.++-.
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~~~~~~~~~~e~n 270 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQRFAYGNLNPDEVN 270 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--SSTGGG---SS-S
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcchHhhccCCCCCccE
Confidence 8888999988999999999999988621 2222221 1 2456899999 88877776531 1111 035567
Q ss_pred EEEEee
Q 022716 285 FRIYGF 290 (293)
Q Consensus 285 ~~~~~~ 290 (293)
+|||.+
T Consensus 271 fri~~~ 276 (287)
T PF03022_consen 271 FRIWRA 276 (287)
T ss_dssp EEEEES
T ss_pred EeEEEe
Confidence 788865
No 471
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=67.99 E-value=17 Score=34.77 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=50.0
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe----e-----------ccCC----CeeEEEEccCCCEEEEe
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF----T-----------KLEW----PVRTISFSHTGDYIASA 230 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~----~-----------~~~~----~v~~l~~sp~~~~l~s~ 230 (293)
+..+.++.....+..++..-.||+|.++|..+++.+... . +... ++..++|||++.-++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 345777887778889999999999999998776444332 0 1111 23458899999999998
Q ss_pred cCCCcEE
Q 022716 231 SEDLFID 237 (293)
Q Consensus 231 s~d~~i~ 237 (293)
..|+.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888855
No 472
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=67.49 E-value=83 Score=28.39 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=30.7
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC----cceeEECCCCCeEEEEE
Q 022716 218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA----MNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~----i~~~~~sp~~~~la~~~ 272 (293)
+.+.++|.+++..+ ..+...|. .|+.+..+..... -..+..-|+|++|+.+.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILAS 208 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEe
Confidence 66678999887666 77888887 4676666554332 25788889999999888
No 473
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=67.45 E-value=23 Score=28.57 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=47.6
Q ss_pred EEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC-C--CcEEEEEcCC----CCEE---EEEecCCCcceeEECCC
Q 022716 195 SLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE-D--LFIDISNVHT----GRTV---HQIPCRAAMNSVEWNPK 264 (293)
Q Consensus 195 ~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d--~~i~iw~~~~----~~~~---~~~~~~~~i~~~~~sp~ 264 (293)
.+||+.+.+........+-...+-.|-|||++|.+|+. | ..+++++..+ .... ..+.....=..+.--||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 46888765432211122223344457799999999875 3 3377777543 1111 11222333334555689
Q ss_pred CCeEEEEEcCCCCC
Q 022716 265 YNLLAYAGDDKNKY 278 (293)
Q Consensus 265 ~~~la~~~~d~~~~ 278 (293)
|..|+.||.+..-+
T Consensus 129 G~vlIvGG~~~~t~ 142 (243)
T PF07250_consen 129 GRVLIVGGSNNPTY 142 (243)
T ss_pred CCEEEEeCcCCCcc
Confidence 99999999875433
No 474
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=67.24 E-value=15 Score=18.57 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=19.5
Q ss_pred EEEEecCCCcEEEEEcCCCCEEEE
Q 022716 226 YIASASEDLFIDISNVHTGRTVHQ 249 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~~~~~~~ 249 (293)
.++.++.++.+.-.|..+|+.+-+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788899999999988886643
No 475
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=66.85 E-value=1.3e+02 Score=29.15 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=45.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeeeeeecCce---------EEEEEc----------------CCCCEEEEEeCCCeEEE
Q 022716 80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN---------INITYK----------------PDGTHIAVGNRDDELTI 134 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~----------------~~~~~l~~~~~d~~i~l 134 (293)
+.++.++.++.|.-.|..+|+.+-.+...... ..+++. ..+..++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 46777788888888899998876554433221 112221 13347888889999999
Q ss_pred EEccccceeeee
Q 022716 135 LDVRKFKPIHRR 146 (293)
Q Consensus 135 ~d~~~~~~~~~~ 146 (293)
.|.++.+.....
T Consensus 275 LDA~TGk~~W~f 286 (764)
T TIGR03074 275 LDADTGKLCEDF 286 (764)
T ss_pred EECCCCCEEEEe
Confidence 999888766543
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=66.82 E-value=60 Score=26.93 Aligned_cols=76 Identities=4% Similarity=0.044 Sum_probs=47.4
Q ss_pred cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec------CCCcEEEEEcCCCCEEEEEec------CCCcceeE
Q 022716 193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS------EDLFIDISNVHTGRTVHQIPC------RAAMNSVE 260 (293)
Q Consensus 193 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s------~d~~i~iw~~~~~~~~~~~~~------~~~i~~~~ 260 (293)
.|.+||+.+.+--.--.+....|.++.|..+.+.++.|. ....+..||..+..- ..+.. .++++.+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEE
Confidence 488999876544333334567899999987777777774 345578888876542 22222 25677777
Q ss_pred ECC-CCCeEE
Q 022716 261 WNP-KYNLLA 269 (293)
Q Consensus 261 ~sp-~~~~la 269 (293)
+.. ++..+.
T Consensus 96 ~~~~d~~~~~ 105 (281)
T PF12768_consen 96 FISNDGSNFW 105 (281)
T ss_pred eeccCCceEE
Confidence 633 443333
No 477
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=66.80 E-value=34 Score=22.56 Aligned_cols=48 Identities=21% Similarity=0.127 Sum_probs=31.5
Q ss_pred CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec-CCCcEEEEEcC
Q 022716 192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLFIDISNVH 242 (293)
Q Consensus 192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~ 242 (293)
+.|..||.++. +....--...+.|.++|++++|..++ ....|.++..+
T Consensus 36 ~~Vvyyd~~~~---~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEV---KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEe---EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 45777776442 22222223568899999999886665 66788888764
No 478
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=66.76 E-value=93 Score=27.59 Aligned_cols=235 Identities=13% Similarity=0.125 Sum_probs=95.2
Q ss_pred cCcc-ccEEEEEEC-----------CCCCeEEEEe-CCCcEEEeecCCCCC-CceeEEEeeC---Cc----CCeeEEEEc
Q 022716 17 TGHK-KKVHSVAWN-----------CTGTKLASGS-VDQTARVWHIEPHGH-GKVKDIELRG---HA----DSVDQLCWD 75 (293)
Q Consensus 17 ~~h~-~~v~~l~~s-----------~~~~~l~s~~-~dg~v~iw~~~~~~~-~~~~~~~~~~---h~----~~i~~~~~~ 75 (293)
..+. .+++-.-|+ .+-++|+..+ ..+.|.|.|+.+... +.+..+ ... +. ..-..+.--
T Consensus 60 mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv-Ie~~ev~~k~g~s~PHT~Hcl 138 (461)
T PF05694_consen 60 MPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV-IEPEEVFEKTGLSRPHTVHCL 138 (461)
T ss_dssp -SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEE-E-HHHHHHHH-EEEEEEEEE-
T ss_pred CCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEee-eCHHHHHhhcCCCCCceeeec
Confidence 4444 466666776 2345676666 578999999875432 222111 111 10 001111222
Q ss_pred CCCCCEEEEEeCC------CeEEEEeCCCCeeeeeeeecCc----eEEEEEcCCCCEEEEEe------------------
Q 022716 76 PKHADLIATASGD------KTVRLWDARSGKCSQQAELSGE----NINITYKPDGTHIAVGN------------------ 127 (293)
Q Consensus 76 ~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~------------------ 127 (293)
|+ ++.++|+-.| |-+.+.|-++-+.....+.... ...+-+.|..+.+++..
T Consensus 139 p~-G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 139 PD-GRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CC-ccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 43 3466665332 3466667665555544443221 12345567666666643
Q ss_pred --CCCeEEEEEccccceeeeecccc---eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE-EEEecCCCcEEEE-eCC
Q 022716 128 --RDDELTILDVRKFKPIHRRKFGY---EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGSADSLVSLW-DIS 200 (293)
Q Consensus 128 --~d~~i~l~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~gs~d~~i~iw-d~~ 200 (293)
...++.+||+.+.+.++.+.++. -.-.+.|-. +|+..+ ++.+.-..+|..| ..+
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH-------------------~P~~~~gFvg~aLss~i~~~~k~~ 278 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLH-------------------DPDANYGFVGCALSSSIWRFYKDD 278 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-S-------------------STT--EEEEEEE--EEEEEEEE-E
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecC-------------------CCCccceEEEEeccceEEEEEEcC
Confidence 34579999999988888776652 122333321 222222 1111122233333 223
Q ss_pred CCE----EEEEeec-----------------cCCCeeEEEEccCCCEEEEec-CCCcEEEEEcCCCC---EEEEEecCCC
Q 022716 201 EML----CVRTFTK-----------------LEWPVRTISFSHTGDYIASAS-EDLFIDISNVHTGR---TVHQIPCRAA 255 (293)
Q Consensus 201 ~~~----~~~~~~~-----------------~~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~~~~---~~~~~~~~~~ 255 (293)
.++ .+-.+.. ...-|+.|.+|.|.++|.... .+|.++.||+.+.. ++.++...+.
T Consensus 279 ~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~ 358 (461)
T PF05694_consen 279 DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGS 358 (461)
T ss_dssp TTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTT
T ss_pred CCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcE
Confidence 321 1111110 012368899999999995554 89999999998753 3334332222
Q ss_pred c-----------------ceeEECCCCCeEEEEE
Q 022716 256 M-----------------NSVEWNPKYNLLAYAG 272 (293)
Q Consensus 256 i-----------------~~~~~sp~~~~la~~~ 272 (293)
+ .-+..|-||+.|=.+.
T Consensus 359 ~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 359 IRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 2 3477888887654443
No 479
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=66.45 E-value=1.2e+02 Score=28.62 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCC-----CEEEEEeC-C---Ce
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-----DLIATASG-D---KT 90 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~-----~~l~s~~~-d---~~ 90 (293)
+++|..+.|.++++.++..-.+|.|++||....................++. .|.++.. +++++.+. + -.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Q ss_pred EEEEeC--CCCeeeee----eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeee-----EEec
Q 022716 91 VRLWDA--RSGKCSQQ----AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEI-----AWNM 159 (293)
Q Consensus 91 i~vwd~--~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v-----~~~~ 159 (293)
.+++.+ ....+... .+..+...+.-.-.+|+..-- .++++..|++..++..+....+.-+..- ...+
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Q ss_pred CCCEEEEecCCCCEEEEEE
Q 022716 160 TGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (293)
......+.+....++-+.+
T Consensus 286 ~s~nRvLLs~~nkIyLld~ 304 (670)
T PF10395_consen 286 PSPNRVLLSVNNKIYLLDL 304 (670)
T ss_pred CCCCeEEEEcCCEEEEEee
No 480
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=66.44 E-value=47 Score=24.03 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=44.1
Q ss_pred EEEEEeCCCeEEEEeCCCC--------eeeeeeeecCceEEEEE---cC-C-CCEEEEEeCCCeEEEEEccccceeeeec
Q 022716 81 LIATASGDKTVRLWDARSG--------KCSQQAELSGENINITY---KP-D-GTHIAVGNRDDELTILDVRKFKPIHRRK 147 (293)
Q Consensus 81 ~l~s~~~d~~i~vwd~~~~--------~~~~~~~~~~~~~~~~~---~~-~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~ 147 (293)
.|+.++.-+.|.|.+.... ..+..+.....+.+++- .| + ...|+.|+ ...+..||..+...+..+.
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhhh
Confidence 4666677777888775422 23344555666666653 32 2 23455554 6778899988766554444
Q ss_pred ccceeeeeEE
Q 022716 148 FGYEVNEIAW 157 (293)
Q Consensus 148 ~~~~~~~v~~ 157 (293)
..-.++.+.+
T Consensus 91 ~~DGvn~i~~ 100 (136)
T PF14781_consen 91 VPDGVNAIVI 100 (136)
T ss_pred CccceeEEEE
Confidence 4444554443
No 481
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=66.11 E-value=94 Score=27.39 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=25.3
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISE 201 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~ 201 (293)
..+.+++.++..+.+.+-+.++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4488999999999999999999999999974
No 482
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.21 E-value=1.6e+02 Score=29.88 Aligned_cols=160 Identities=18% Similarity=0.230 Sum_probs=86.6
Q ss_pred eEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEE--------EcCCCCEEEEEeCCCeEEEEEcccc
Q 022716 70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINIT--------YKPDGTHIAVGNRDDELTILDVRKF 140 (293)
Q Consensus 70 ~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~l~~~~~d~~i~l~d~~~~ 140 (293)
..+.+-|.=+...+| -|..+.+|+.+++.....+. ....+..+. |.|.=+++++....-.+.++-+.-.
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 344445554455554 47789999998854333332 222222222 2233344444444455555543211
Q ss_pred ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEE--eCCCC---E-E----------
Q 022716 141 KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLW--DISEM---L-C---------- 204 (293)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iw--d~~~~---~-~---------- 204 (293)
+..... . +-...+.+......+.|+....+|+.+.+|-++ .|+=. ....+ . +
T Consensus 160 ~~~~~~----~-------~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~l 227 (1311)
T KOG1900|consen 160 EFTGEL----S-------IFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVL 227 (1311)
T ss_pred cccCcc----c-------ccccceeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHH
Confidence 110000 0 000113334445667888888888888877655 33221 22211 0 1
Q ss_pred ------EEEee-ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 205 ------VRTFT-KLEWPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 205 ------~~~~~-~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
+-++. .+..+|..+........+.+=++.++|..|++..
T Consensus 228 s~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 228 SSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred HHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 01122 4467899999988888899999999999999876
No 483
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=64.97 E-value=74 Score=27.40 Aligned_cols=69 Identities=17% Similarity=0.084 Sum_probs=40.5
Q ss_pred EEEecCCCcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC
Q 022716 185 FAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA 254 (293)
Q Consensus 185 l~~gs~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~ 254 (293)
+.+++.+|.|.-.|..++..+=...-. ...+..-.+..+|+ ++.++.++.++..|..+|+++-......
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC
Confidence 344467777777777777543211111 01111111222565 7788888889999998998877665544
No 484
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.26 E-value=1e+02 Score=27.11 Aligned_cols=97 Identities=8% Similarity=0.011 Sum_probs=55.6
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-----EEEEeec--cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEML-----CVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-----~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~ 244 (293)
.++.+.+.+++..++++ ..|.+. +....+. ....... ....+.++.|.++++.+++ +.+|.+.... ..|
T Consensus 282 ~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G 357 (398)
T PLN00033 282 RIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGG 357 (398)
T ss_pred ceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCC
Confidence 45677788888887766 445543 3333332 1222211 1235888999888776555 5667665553 334
Q ss_pred CEEEEEe----cCCCcceeEECCCCCeEEEEE
Q 022716 245 RTVHQIP----CRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 245 ~~~~~~~----~~~~i~~~~~sp~~~~la~~~ 272 (293)
+.-...+ ....+.++.|.++++.+++|.
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred cceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 4322222 123567899988877777774
No 485
>PLN02193 nitrile-specifier protein
Probab=64.24 E-value=1.1e+02 Score=27.52 Aligned_cols=65 Identities=12% Similarity=-0.110 Sum_probs=35.1
Q ss_pred CCCEEEEecCC----CcEEEEeCCCCEEEEEee--c-cCCCeeEEEEccCCCEEEEecCC--------------CcEEEE
Q 022716 181 MGRYFAVGSAD----SLVSLWDISEMLCVRTFT--K-LEWPVRTISFSHTGDYIASASED--------------LFIDIS 239 (293)
Q Consensus 181 ~~~~l~~gs~d----~~i~iwd~~~~~~~~~~~--~-~~~~v~~l~~sp~~~~l~s~s~d--------------~~i~iw 239 (293)
+++.++.|+.+ +.+.+||+.+.+-...-. . ........+..-+++.++.|+.+ ..+.++
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEE
Confidence 45666666654 458999987754322111 0 11111112223356777788753 246788
Q ss_pred EcCCCC
Q 022716 240 NVHTGR 245 (293)
Q Consensus 240 ~~~~~~ 245 (293)
|..+.+
T Consensus 408 D~~t~~ 413 (470)
T PLN02193 408 DTETLQ 413 (470)
T ss_pred EcCcCE
Confidence 887654
No 486
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=63.38 E-value=93 Score=26.37 Aligned_cols=106 Identities=14% Similarity=0.232 Sum_probs=59.5
Q ss_pred ccEEEEEECCCCCeEEEEeCCCc------EEEeecCCCC--CCcee---EEEeeCCcC--------CeeEEEEcCCCCCE
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQT------ARVWHIEPHG--HGKVK---DIELRGHAD--------SVDQLCWDPKHADL 81 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~------v~iw~~~~~~--~~~~~---~~~~~~h~~--------~i~~~~~~~~~~~~ 81 (293)
+.++.|.+.+++..+++-+.+|. +...++.... ..... ...+..-.+ -.-++++ +.++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCCE
Confidence 57889999977777888888887 5555544211 00110 111111111 1225566 344567
Q ss_pred EEEEeCC------CeEEEEeCCCCeeeeeeee----------------cCceEEEEEcCCCCEEEEEeC
Q 022716 82 IATASGD------KTVRLWDARSGKCSQQAEL----------------SGENINITYKPDGTHIAVGNR 128 (293)
Q Consensus 82 l~s~~~d------~~i~vwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~ 128 (293)
+++.-.+ ..|..++.. ++....+.. ....-.++++|+|+.|++..+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 7766656 678888765 544332211 112346899999997777654
No 487
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=62.52 E-value=1.2e+02 Score=27.46 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=52.5
Q ss_pred CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC-cCCeeEEEEcCCCCCEEEEEeC--CCeEEEEeCCCCeeeeee
Q 022716 29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASG--DKTVRLWDARSGKCSQQA 105 (293)
Q Consensus 29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~ 105 (293)
..++..++-+..+|.+..-.+..... ...+..-+. .....++.+...+.++|+.|+. |+.+..|....-+....+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~--~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~ 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGG--SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEE--EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCC--eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec
Confidence 45677888999999998877653211 112222232 4445666665443347777877 545555553333344444
Q ss_pred eecCceEEEEEcC---CCC-------EEEEEe---CCCeEEEE
Q 022716 106 ELSGENINITYKP---DGT-------HIAVGN---RDDELTIL 135 (293)
Q Consensus 106 ~~~~~~~~~~~~~---~~~-------~l~~~~---~d~~i~l~ 135 (293)
..-+++..+...+ .+. .+++++ .+|.+++.
T Consensus 297 ~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~l 339 (504)
T PF10433_consen 297 PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRIL 339 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEE
T ss_pred cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEE
Confidence 4455666665532 111 555554 35677765
No 488
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=62.12 E-value=12 Score=34.43 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=54.9
Q ss_pred EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCc-EEEEEcCCCCE-EE---EE--ec-C----CCcceeEE
Q 022716 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRT-VH---QI--PC-R----AAMNSVEW 261 (293)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~~~~-~~---~~--~~-~----~~i~~~~~ 261 (293)
+.+=|..+...+..|+.|..++..++|-+.|..+++++..|. |.++-+..... +. +. .. + .-|-.++|
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicf 376 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICF 376 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhh
Confidence 445566666667788999999999999999999999986654 55554432111 11 00 00 1 12345788
Q ss_pred CCCCCeEEEEEcCCC
Q 022716 262 NPKYNLLAYAGDDKN 276 (293)
Q Consensus 262 sp~~~~la~~~~d~~ 276 (293)
+...+.++.+|.++.
T Consensus 377 s~~s~~r~~gsc~Ge 391 (788)
T KOG2109|consen 377 SEVSTIRTAGSCEGE 391 (788)
T ss_pred hhhcceEeecccCCC
Confidence 888888888887753
No 489
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=61.94 E-value=1.6e+02 Score=28.55 Aligned_cols=124 Identities=12% Similarity=0.208 Sum_probs=70.4
Q ss_pred CccccEEEEEEC---C--CCC-eEEEEeCCCcEEEeecCCC------CCC--c---eeEEEeeCC---cCCeeEEEEcCC
Q 022716 18 GHKKKVHSVAWN---C--TGT-KLASGSVDQTARVWHIEPH------GHG--K---VKDIELRGH---ADSVDQLCWDPK 77 (293)
Q Consensus 18 ~h~~~v~~l~~s---~--~~~-~l~s~~~dg~v~iw~~~~~------~~~--~---~~~~~~~~h---~~~i~~~~~~~~ 77 (293)
.-..+|..+.|. . +.. .++..-....+.|+...-. ... . .....+..+ ..+..+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456799999998 2 111 2344455566777762111 100 0 001112111 124668899998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCe------eeeeeeecCc----------eEEEEEcCCCCEEEEEeCCCeEEEEEccccc
Q 022716 78 HADLIATASGDKTVRLWDARSGK------CSQQAELSGE----------NINITYKPDGTHIAVGNRDDELTILDVRKFK 141 (293)
Q Consensus 78 ~~~~l~s~~~d~~i~vwd~~~~~------~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~ 141 (293)
....|+.....|.-.||++.... ........+. -..+.|.++-..|+++.. ..+.++|+++..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCC
Confidence 88899999999999999992111 1000011111 125678777777777754 567788887654
Q ss_pred e
Q 022716 142 P 142 (293)
Q Consensus 142 ~ 142 (293)
.
T Consensus 236 ~ 236 (765)
T PF10214_consen 236 Q 236 (765)
T ss_pred c
Confidence 3
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=60.51 E-value=23 Score=33.40 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=40.4
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 022716 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTIL 135 (293)
Q Consensus 67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~ 135 (293)
..++++.-+|.+ .-++++..||.|++++.-..+.....+...+...+.|...| |++.++|.+..-|
T Consensus 15 e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 15 EFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAW 80 (1636)
T ss_pred ceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhhee
Confidence 345666767854 56789999999999997655443333334444455555433 4555555555555
No 491
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=58.68 E-value=1.1e+02 Score=25.71 Aligned_cols=184 Identities=5% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CCCeEEEEeCC-----CcEEEeecCCCCC----CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-----CCeEEEEeC
Q 022716 31 TGTKLASGSVD-----QTARVWHIEPHGH----GKVKDIELRGHADSVDQLCWDPKHADLIATASG-----DKTVRLWDA 96 (293)
Q Consensus 31 ~~~~l~s~~~d-----g~v~iw~~~~~~~----~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-----d~~i~vwd~ 96 (293)
++...+.|+.+ ..+..+|+..... ..........+......+ +..+++.|+. ...+..||+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-----~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-----DGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-----CCEEEEEeCcCCCccCceEEEEcC
Q ss_pred CCCeeeeeeeec--CceEEEEEcCCCCEEEEEeCC----CeEEEEEccccceeeeecccceeeeeEEecCCCEEEE-ecC
Q 022716 97 RSGKCSQQAELS--GENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL-TTG 169 (293)
Q Consensus 97 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~ 169 (293)
.+.+....-... ......+...+++..+.|+.+ ..+..+|+++.+ |..-..+... ...
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~---------------W~~~~~~~~~~~p~ 211 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ---------------WQKVADPTTDSEPI 211 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe---------------eEECCCCCCCCCce
Q ss_pred CCCEEEEEECCCCCEEEEecCC-------------------------------------CcEEEEeCCCCEEEEEeecc-
Q 022716 170 NAGCYCIAIDPMGRYFAVGSAD-------------------------------------SLVSLWDISEMLCVRTFTKL- 211 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d-------------------------------------~~i~iwd~~~~~~~~~~~~~- 211 (293)
.....+.+...++.+++.|+.+ +.+.+||+.+.+-...-.-.
T Consensus 212 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 291 (323)
T TIGR03548 212 SLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF 291 (323)
T ss_pred eccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc
Q ss_pred CCCeeEEEEccCCCEEEEecCCC
Q 022716 212 EWPVRTISFSHTGDYIASASEDL 234 (293)
Q Consensus 212 ~~~v~~l~~sp~~~~l~s~s~d~ 234 (293)
......-...-+++..+.|+...
T Consensus 292 ~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 292 FARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred cccCchheEEECCEEEEEecccc
No 492
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=58.46 E-value=1.4e+02 Score=26.74 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=60.3
Q ss_pred CCeEEEEeCCCcEEEe-ecCCCCCCceeEEE-eeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEEEEeCCCCeeeeeeeec
Q 022716 32 GTKLASGSVDQTARVW-HIEPHGHGKVKDIE-LRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELS 108 (293)
Q Consensus 32 ~~~l~s~~~dg~v~iw-~~~~~~~~~~~~~~-~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 108 (293)
|.-|+.++.||-|.=| |+...+.+....+. +.-...++..+. |+ ..+.+++-...|++.++.....+..-....-
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~--pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~ 357 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL--PETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY 357 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeec--cccccceEEEEcCCCceeeeecccCcceehhhhh
Confidence 4457778888888876 55433222211111 000112233332 32 2345777788888877765444433322222
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEccccce
Q 022716 109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKP 142 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~ 142 (293)
..+.-++++|.+.++++-. .+.++++.+.+..+
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 3444578999999888753 57888888876554
No 493
>PLN02153 epithiospecifier protein
Probab=58.19 E-value=1.2e+02 Score=25.83 Aligned_cols=188 Identities=9% Similarity=-0.011 Sum_probs=0.0
Q ss_pred CCCeEEEEeCC-----CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-----------CeEEEE
Q 022716 31 TGTKLASGSVD-----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----------KTVRLW 94 (293)
Q Consensus 31 ~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-----------~~i~vw 94 (293)
+++..+.|+.+ ..+.+||...+...............+....+....+..+++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Q ss_pred eCCCCeeeeeeee----cCceEEEEEcCCCCEEEEEeCC-------------CeEEEEEccccceeeeecccceeeeeEE
Q 022716 95 DARSGKCSQQAEL----SGENINITYKPDGTHIAVGNRD-------------DELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 95 d~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d-------------~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
|.++.+....... .......+..-+++.++.++.+ +.+.++|+.+.+ |
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~---------------W 229 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK---------------W 229 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc---------------E
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC--------------CcEEEEeCCCCEEEEEeeccCCC-------ee
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD--------------SLVSLWDISEMLCVRTFTKLEWP-------VR 216 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d--------------~~i~iwd~~~~~~~~~~~~~~~~-------v~ 216 (293)
..-...-..-.......++.+. +++++.|+.. +.+..||+.+..-...-.....+ ..
T Consensus 230 ~~~~~~g~~P~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~ 307 (341)
T PLN02153 230 TEVETTGAKPSARSVFAHAVVG--KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYT 307 (341)
T ss_pred EeccccCCCCCCcceeeeEEEC--CEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCcccccc
Q ss_pred EEEEccCCCEEEEecCCCc
Q 022716 217 TISFSHTGDYIASASEDLF 235 (293)
Q Consensus 217 ~l~~sp~~~~l~s~s~d~~ 235 (293)
++...-+++.++.|+.+..
T Consensus 308 ~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 308 TATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred ccccCCcceEEEEcCcCCC
No 494
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.70 E-value=1.8e+02 Score=27.68 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=30.1
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
..+..+.++|+.++|+--+..|.|.+-+.+..+.+-.+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 45678899999999999999999999877655444443
No 495
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=56.39 E-value=1.6e+02 Score=28.24 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=45.3
Q ss_pred CCCEEEEEEC----CCCCE--EEEecCCCcE-EEEeCCC---CE--EEEEee--ccCCCeeEEEEccCCCEEEEecCCCc
Q 022716 170 NAGCYCIAID----PMGRY--FAVGSADSLV-SLWDISE---ML--CVRTFT--KLEWPVRTISFSHTGDYIASASEDLF 235 (293)
Q Consensus 170 ~~~~~~~~~~----~~~~~--l~~gs~d~~i-~iwd~~~---~~--~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~d~~ 235 (293)
+...+.|+++ .++.+ +..|+++|+| ++-...+ .. .+.++. .+..+|..+.+++..+.|..|+..+.
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV 486 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGV 486 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcE
Confidence 4555666666 44444 6788999874 3333333 11 233333 34478999999999999999999987
Q ss_pred EEE
Q 022716 236 IDI 238 (293)
Q Consensus 236 i~i 238 (293)
++|
T Consensus 487 ~qv 489 (737)
T KOG3611|consen 487 VQV 489 (737)
T ss_pred EEe
Confidence 654
No 496
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=55.52 E-value=26 Score=17.43 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=19.5
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEee
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWH 48 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~ 48 (293)
.|.+++.++ .+++.+.+-+.+|+|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 577887654 5888888889999973
No 497
>PRK13684 Ycf48-like protein; Provisional
Probab=55.00 E-value=1.3e+02 Score=25.54 Aligned_cols=99 Identities=8% Similarity=0.114 Sum_probs=55.0
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec----cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
..++++++.++++.+++|. .|.+.+=....+..-..... ....+.++.+.|+++.++ ++.+|.+.. ....|+.
T Consensus 215 ~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~t 291 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKT 291 (334)
T ss_pred ccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCC
Confidence 4566788888888777664 46554322333322111111 224578899999887655 455676554 3333443
Q ss_pred EEEEe----cCCCcceeEECCCCCeEEEEE
Q 022716 247 VHQIP----CRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 247 ~~~~~----~~~~i~~~~~sp~~~~la~~~ 272 (293)
-.... .......+.|..++..+++|.
T Consensus 292 W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 292 WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 22221 112466777777677777664
No 498
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=54.88 E-value=27 Score=18.75 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=15.6
Q ss_pred CCCEEEEEeCCCeEEEEEcc
Q 022716 119 DGTHIAVGNRDDELTILDVR 138 (293)
Q Consensus 119 ~~~~l~~~~~d~~i~l~d~~ 138 (293)
.+..++.++.|+.+..+|.+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 35688899999999999875
No 499
>PRK10115 protease 2; Provisional
Probab=54.10 E-value=2e+02 Score=27.39 Aligned_cols=60 Identities=8% Similarity=0.126 Sum_probs=36.3
Q ss_pred CeeEEEEcCCCCCEEEEEeCCC----eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC
Q 022716 68 SVDQLCWDPKHADLIATASGDK----TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR 128 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 128 (293)
.+..+.++|++..+.++...+| .+++-|+.++..+... .......++|.+|++.|+....
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEe
Confidence 3566788887654555444433 3778888877532211 1222245899999988777654
No 500
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=53.86 E-value=33 Score=18.25 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=23.2
Q ss_pred EEEEecCCCcEEEEEcCCCCEEEEEecCC
Q 022716 226 YIASASEDLFIDISNVHTGRTVHQIPCRA 254 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~ 254 (293)
.+..++.||.++-.|..+|+.+-.++...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 35556899999999999999988776544
Done!