Query 022716
Match_columns 293
No_of_seqs 173 out of 2110
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 10:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 4.2E-43 1.4E-47 294.5 37.6 268 12-290 24-319 (321)
2 1vyh_C Platelet-activating fac 100.0 5.7E-43 1.9E-47 303.3 38.1 265 13-290 101-409 (410)
3 4g56_B MGC81050 protein; prote 100.0 4.9E-44 1.7E-48 304.5 30.1 277 4-290 26-341 (357)
4 4gqb_B Methylosome protein 50; 100.0 1.8E-42 6E-47 293.2 34.5 246 18-291 80-330 (344)
5 2ynn_A Coatomer subunit beta'; 100.0 1.9E-41 6.5E-46 282.3 40.1 267 12-292 5-302 (304)
6 2xzm_R RACK1; ribosome, transl 100.0 2.5E-41 8.6E-46 286.2 36.8 276 6-292 7-340 (343)
7 3frx_A Guanine nucleotide-bind 100.0 1.4E-40 4.8E-45 278.9 36.2 241 12-274 9-258 (319)
8 1got_B GT-beta; complex (GTP-b 100.0 4.6E-40 1.6E-44 278.1 39.5 260 12-277 47-336 (340)
9 2pm7_B Protein transport prote 100.0 1.5E-40 5.1E-45 276.0 34.9 245 15-279 4-280 (297)
10 3iz6_a 40S ribosomal protein R 100.0 7.9E-41 2.7E-45 287.0 33.1 253 11-291 57-374 (380)
11 2pbi_B Guanine nucleotide-bind 100.0 2.9E-39 1E-43 274.7 41.9 266 11-289 55-354 (354)
12 4ery_A WD repeat-containing pr 100.0 3.9E-39 1.3E-43 268.9 41.4 269 12-291 15-311 (312)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-39 4.2E-44 276.1 37.0 269 12-282 7-333 (345)
14 1nr0_A Actin interacting prote 100.0 6.4E-40 2.2E-44 297.8 36.4 261 13-279 140-562 (611)
15 1erj_A Transcriptional repress 100.0 8.4E-39 2.9E-43 275.6 38.0 246 21-292 124-389 (393)
16 3frx_A Guanine nucleotide-bind 100.0 1.2E-38 4.1E-43 267.2 37.4 245 13-292 58-317 (319)
17 2hes_X YDR267CP; beta-propelle 100.0 7.7E-39 2.6E-43 269.5 35.8 268 12-293 6-329 (330)
18 3bg1_A Protein SEC13 homolog; 100.0 3.4E-40 1.2E-44 276.2 26.2 261 15-281 8-290 (316)
19 4aow_A Guanine nucleotide-bind 100.0 1.1E-37 3.7E-42 262.4 39.8 269 13-292 31-337 (340)
20 3zwl_B Eukaryotic translation 100.0 1.5E-37 5.3E-42 263.8 40.6 267 12-292 24-346 (369)
21 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-38 9.4E-43 265.9 34.1 263 14-291 5-336 (351)
22 1nr0_A Actin interacting prote 100.0 2.8E-38 9.7E-43 287.0 35.3 245 12-281 51-352 (611)
23 2ymu_A WD-40 repeat protein; u 100.0 9.4E-38 3.2E-42 281.2 37.6 256 12-276 295-572 (577)
24 3ei3_B DNA damage-binding prot 100.0 9.8E-38 3.4E-42 267.6 34.6 267 13-292 66-382 (383)
25 1gxr_A ESG1, transducin-like e 100.0 1.1E-36 3.8E-41 255.6 39.5 264 16-290 47-335 (337)
26 4e54_B DNA damage-binding prot 100.0 2.9E-38 9.9E-43 275.7 30.7 268 14-292 113-430 (435)
27 1sq9_A Antiviral protein SKI8; 100.0 1.8E-37 6.2E-42 266.7 33.5 269 13-292 9-395 (397)
28 4h5i_A Guanine nucleotide-exch 100.0 3.1E-38 1.1E-42 269.4 27.7 260 21-291 15-342 (365)
29 3jrp_A Fusion protein of prote 100.0 3.3E-37 1.1E-41 262.9 33.4 249 12-280 3-283 (379)
30 3dm0_A Maltose-binding peripla 100.0 3E-37 1E-41 284.1 35.6 251 14-291 376-631 (694)
31 4gqb_B Methylosome protein 50; 100.0 1.5E-37 5E-42 263.0 30.7 253 15-290 25-295 (344)
32 2ymu_A WD-40 repeat protein; u 100.0 3E-36 1E-40 271.4 39.7 262 12-281 254-536 (577)
33 2pm9_A Protein WEB1, protein t 100.0 1.4E-37 4.8E-42 268.9 28.1 267 17-291 64-413 (416)
34 3mmy_A MRNA export factor; mRN 100.0 2.1E-36 7.2E-41 256.7 32.9 262 12-278 31-340 (368)
35 1erj_A Transcriptional repress 100.0 3.3E-36 1.1E-40 259.4 34.1 239 17-282 61-339 (393)
36 3k26_A Polycomb protein EED; W 100.0 5.3E-36 1.8E-40 254.3 33.6 267 15-291 13-365 (366)
37 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-35 6.1E-40 245.9 36.0 261 11-292 9-296 (313)
38 3i2n_A WD repeat-containing pr 100.0 1E-36 3.4E-41 258.0 28.4 270 12-292 10-353 (357)
39 4a11_B DNA excision repair pro 100.0 2.1E-35 7.3E-40 254.1 36.7 252 12-291 35-364 (408)
40 1r5m_A SIR4-interacting protei 100.0 9E-36 3.1E-40 257.6 33.3 257 19-291 107-424 (425)
41 3dm0_A Maltose-binding peripla 100.0 1.4E-35 4.8E-40 273.1 36.2 245 13-292 423-693 (694)
42 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-35 3.7E-40 253.2 32.2 245 15-279 3-269 (372)
43 1got_B GT-beta; complex (GTP-b 100.0 3.5E-35 1.2E-39 248.1 34.4 226 13-240 90-340 (340)
44 3gre_A Serine/threonine-protei 100.0 1.4E-36 4.7E-41 264.9 26.0 246 12-279 54-354 (437)
45 1r5m_A SIR4-interacting protei 100.0 2.6E-35 9E-40 254.7 33.6 259 18-279 43-356 (425)
46 3ow8_A WD repeat-containing pr 100.0 5.6E-35 1.9E-39 245.1 34.5 222 15-241 75-319 (321)
47 3dw8_B Serine/threonine-protei 100.0 5.6E-36 1.9E-40 261.3 27.8 251 18-283 26-372 (447)
48 3vl1_A 26S proteasome regulato 100.0 1.4E-35 4.8E-40 256.9 29.8 261 17-292 95-365 (420)
49 1yfq_A Cell cycle arrest prote 100.0 2.6E-35 8.7E-40 248.2 30.2 255 16-276 7-315 (342)
50 1vyh_C Platelet-activating fac 100.0 3E-35 1E-39 254.8 31.1 225 12-241 142-409 (410)
51 3dwl_C Actin-related protein 2 100.0 6.3E-37 2.2E-41 261.8 18.6 240 16-276 7-274 (377)
52 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-35 4.1E-40 263.7 27.3 249 16-292 203-517 (524)
53 3vl1_A 26S proteasome regulato 100.0 4E-35 1.4E-39 254.1 29.9 247 13-292 132-419 (420)
54 2aq5_A Coronin-1A; WD40 repeat 100.0 5.1E-35 1.7E-39 252.5 29.5 251 13-292 74-342 (402)
55 3jro_A Fusion protein of prote 100.0 2E-35 7E-40 274.1 28.2 248 14-281 3-282 (753)
56 3mkq_A Coatomer beta'-subunit; 100.0 6.6E-34 2.3E-38 265.8 38.3 258 12-274 5-293 (814)
57 4g56_B MGC81050 protein; prote 100.0 8.2E-35 2.8E-39 247.6 29.3 226 16-244 90-344 (357)
58 3v7d_B Cell division control p 100.0 2.2E-33 7.5E-38 246.5 37.5 260 13-291 114-420 (464)
59 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-34 3.9E-39 246.9 27.8 262 12-291 44-360 (372)
60 4aez_A CDC20, WD repeat-contai 100.0 1.6E-33 5.5E-38 243.1 34.6 238 18-291 132-379 (401)
61 1gxr_A ESG1, transducin-like e 100.0 1.2E-33 4.2E-38 237.0 32.5 254 19-279 8-291 (337)
62 2pbi_B Guanine nucleotide-bind 100.0 7.2E-34 2.5E-38 241.5 31.2 206 13-240 147-354 (354)
63 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-35 4.5E-40 263.5 21.0 243 19-281 132-425 (524)
64 1pgu_A Actin interacting prote 100.0 5.9E-33 2E-37 251.3 38.5 267 12-292 152-614 (615)
65 4gga_A P55CDC, cell division c 100.0 5.8E-33 2E-37 241.1 36.8 243 16-290 143-393 (420)
66 2pm9_A Protein WEB1, protein t 100.0 5.7E-35 1.9E-39 252.5 23.9 263 19-292 11-337 (416)
67 3sfz_A APAF-1, apoptotic pepti 100.0 2.6E-33 8.9E-38 272.8 38.1 227 12-242 649-912 (1249)
68 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.1E-33 7.3E-38 237.7 32.6 231 17-250 58-342 (345)
69 2ynn_A Coatomer subunit beta'; 100.0 3.9E-33 1.3E-37 232.0 32.2 222 60-282 7-257 (304)
70 3dwl_C Actin-related protein 2 100.0 3.4E-35 1.2E-39 251.1 19.9 222 12-242 47-280 (377)
71 2oaj_A Protein SNI1; WD40 repe 100.0 2.8E-34 9.6E-39 270.5 27.7 262 14-281 93-602 (902)
72 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-33 5.6E-38 265.3 32.8 246 14-276 11-299 (902)
73 2xyi_A Probable histone-bindin 100.0 1.3E-33 4.3E-38 246.1 29.0 253 14-291 122-409 (430)
74 3vu4_A KMHSV2; beta-propeller 100.0 6.3E-33 2.1E-37 235.8 31.8 254 13-276 12-328 (355)
75 4gq1_A NUP37; propeller, trans 100.0 2.1E-34 7.2E-39 248.1 22.5 257 19-275 88-381 (393)
76 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-32 4.2E-37 268.1 37.5 262 13-280 608-909 (1249)
77 3dw8_B Serine/threonine-protei 100.0 8.1E-34 2.8E-38 247.6 25.9 252 13-275 74-438 (447)
78 3gre_A Serine/threonine-protei 100.0 6.5E-34 2.2E-38 247.9 24.6 243 18-289 109-437 (437)
79 4ery_A WD repeat-containing pr 100.0 7E-32 2.4E-36 225.0 34.9 226 12-242 57-311 (312)
80 2xzm_R RACK1; ribosome, transl 100.0 1.3E-32 4.3E-37 232.7 30.3 226 13-244 69-341 (343)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-32 4.2E-37 237.6 29.4 244 22-291 36-298 (402)
82 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-31 8E-36 232.5 37.6 260 12-292 151-442 (445)
83 4ggc_A P55CDC, cell division c 100.0 2.9E-31 1E-35 221.0 36.0 244 16-291 63-314 (318)
84 1pgu_A Actin interacting prote 100.0 2.2E-32 7.4E-37 247.6 30.8 240 17-281 15-280 (615)
85 4aez_A CDC20, WD repeat-contai 100.0 7.7E-32 2.6E-36 232.6 32.9 239 18-291 89-335 (401)
86 2hes_X YDR267CP; beta-propelle 100.0 8.5E-32 2.9E-36 226.5 32.0 224 18-243 56-328 (330)
87 3iz6_a 40S ribosomal protein R 100.0 6.5E-33 2.2E-37 237.8 25.3 218 13-245 150-377 (380)
88 3zwl_B Eukaryotic translation 100.0 3.7E-31 1.3E-35 224.5 35.4 234 57-291 23-303 (369)
89 3lrv_A PRE-mRNA-splicing facto 100.0 2.2E-33 7.5E-38 237.4 20.7 228 27-292 43-292 (343)
90 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.3E-31 1.1E-35 232.1 33.7 235 16-272 98-372 (450)
91 2pm7_B Protein transport prote 100.0 1.2E-31 4.1E-36 222.3 29.2 214 12-243 45-285 (297)
92 4aow_A Guanine nucleotide-bind 100.0 8.5E-31 2.9E-35 220.3 33.9 219 60-279 32-281 (340)
93 4h5i_A Guanine nucleotide-exch 100.0 3.1E-32 1E-36 232.4 25.3 226 15-244 68-344 (365)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9E-32 3.1E-36 235.6 28.8 245 20-290 4-337 (450)
95 1p22_A F-BOX/WD-repeat protein 100.0 4.1E-31 1.4E-35 230.4 31.4 235 13-292 166-414 (435)
96 3k26_A Polycomb protein EED; W 100.0 1.5E-31 5E-36 226.9 26.0 218 19-242 68-365 (366)
97 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6E-30 2.1E-34 223.6 36.6 250 13-281 111-388 (445)
98 3v7d_B Cell division control p 100.0 2.5E-30 8.4E-35 227.0 33.9 252 12-274 154-453 (464)
99 1p22_A F-BOX/WD-repeat protein 100.0 3.7E-30 1.3E-34 224.4 34.1 229 17-279 130-360 (435)
100 2j04_A TAU60, YPL007P, hypothe 100.0 2E-31 6.7E-36 233.2 24.1 236 20-290 15-295 (588)
101 1sq9_A Antiviral protein SKI8; 100.0 1.2E-30 4.1E-35 224.1 28.6 232 12-245 54-397 (397)
102 3i2n_A WD repeat-containing pr 100.0 1.5E-30 5E-35 220.1 28.6 226 17-246 62-356 (357)
103 3bws_A Protein LP49; two-domai 100.0 8.6E-30 2.9E-34 221.5 33.8 245 15-292 164-432 (433)
104 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-30 1E-34 216.7 30.0 220 13-250 50-344 (351)
105 3bg1_A Protein SEC13 homolog; 100.0 2.2E-31 7.5E-36 222.7 22.6 212 13-243 50-293 (316)
106 3mkq_A Coatomer beta'-subunit; 100.0 5.5E-30 1.9E-34 239.3 34.6 255 12-272 47-375 (814)
107 1l0q_A Surface layer protein; 100.0 4.6E-29 1.6E-33 214.0 35.4 239 14-280 26-271 (391)
108 3ei3_B DNA damage-binding prot 100.0 1.7E-29 5.7E-34 216.4 29.9 201 60-279 67-277 (383)
109 4e54_B DNA damage-binding prot 100.0 4.5E-31 1.5E-35 230.3 20.2 200 62-280 115-323 (435)
110 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-30 7.1E-35 219.1 22.2 243 21-290 77-341 (343)
111 3jrp_A Fusion protein of prote 100.0 2.3E-29 7.9E-34 214.3 28.8 215 13-245 48-289 (379)
112 3odt_A Protein DOA1; ubiquitin 100.0 5E-29 1.7E-33 206.9 29.1 230 13-250 52-303 (313)
113 2j04_A TAU60, YPL007P, hypothe 100.0 9.2E-30 3.2E-34 222.7 25.2 223 18-273 83-350 (588)
114 4gga_A P55CDC, cell division c 100.0 1.3E-28 4.4E-33 213.7 32.0 233 23-281 108-350 (420)
115 4a11_B DNA excision repair pro 100.0 1.4E-28 4.9E-33 211.5 31.0 253 17-276 96-397 (408)
116 2w18_A PALB2, fancn, partner a 100.0 4.2E-29 1.4E-33 206.1 25.9 209 19-290 110-355 (356)
117 2xyi_A Probable histone-bindin 100.0 1E-28 3.4E-33 215.1 27.8 212 12-243 173-410 (430)
118 4ggc_A P55CDC, cell division c 100.0 8.7E-28 3E-32 200.0 32.0 233 23-280 28-269 (318)
119 4gq1_A NUP37; propeller, trans 100.0 1.2E-29 4.3E-34 218.3 20.3 216 15-236 131-383 (393)
120 3mmy_A MRNA export factor; mRN 100.0 1.4E-28 5E-33 208.4 26.3 221 14-242 80-345 (368)
121 3vu4_A KMHSV2; beta-propeller 100.0 6.2E-28 2.1E-32 205.0 28.6 219 61-292 14-271 (355)
122 3jro_A Fusion protein of prote 100.0 5.7E-29 2E-33 230.9 23.4 213 13-243 46-285 (753)
123 1l0q_A Surface layer protein; 100.0 9.3E-27 3.2E-31 199.7 32.9 214 33-273 3-219 (391)
124 1yfq_A Cell cycle arrest prote 100.0 2.5E-27 8.7E-32 199.3 27.8 216 63-282 8-280 (342)
125 3bws_A Protein LP49; two-domai 100.0 5.5E-27 1.9E-31 203.7 28.4 246 21-291 123-389 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.8E-25 2E-29 190.5 29.3 225 12-265 170-409 (415)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-25 5.3E-30 194.1 23.8 233 14-275 111-375 (415)
128 1ri6_A Putative isomerase YBHE 99.9 5.4E-24 1.8E-28 178.8 30.7 241 17-273 34-296 (343)
129 2ojh_A Uncharacterized protein 99.9 1.2E-24 4E-29 178.7 24.4 237 13-275 34-293 (297)
130 3u4y_A Uncharacterized protein 99.9 7.5E-23 2.6E-27 171.4 31.7 254 26-292 3-304 (331)
131 3vgz_A Uncharacterized protein 99.9 4.1E-22 1.4E-26 168.1 34.7 265 19-290 39-351 (353)
132 1nir_A Nitrite reductase; hemo 99.9 1.3E-22 4.4E-27 181.3 32.2 238 27-272 144-439 (543)
133 1nir_A Nitrite reductase; hemo 99.9 6.6E-23 2.2E-27 183.1 29.1 245 23-272 181-497 (543)
134 1pby_B Quinohemoprotein amine 99.9 4.2E-22 1.4E-26 166.8 29.2 244 33-281 2-307 (337)
135 2w18_A PALB2, fancn, partner a 99.9 4.9E-22 1.7E-26 164.1 27.5 239 22-281 41-311 (356)
136 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-22 4.3E-27 188.0 24.7 246 20-275 36-358 (741)
137 3hfq_A Uncharacterized protein 99.9 2.3E-21 8E-26 163.6 29.9 235 18-274 37-306 (347)
138 2z3z_A Dipeptidyl aminopeptida 99.9 8E-22 2.7E-26 181.7 29.3 244 21-274 82-421 (706)
139 1jmx_B Amine dehydrogenase; ox 99.9 5.6E-22 1.9E-26 166.9 25.8 231 25-282 4-323 (349)
140 3scy_A Hypothetical bacterial 99.9 1.2E-20 4.2E-25 160.0 33.4 249 19-291 48-336 (361)
141 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-21 3.9E-26 181.5 25.2 246 22-274 110-445 (741)
142 1k32_A Tricorn protease; prote 99.9 2.8E-21 9.5E-26 185.4 28.0 273 13-291 92-460 (1045)
143 1k32_A Tricorn protease; prote 99.9 2.6E-21 8.8E-26 185.6 26.5 257 14-281 197-499 (1045)
144 3o4h_A Acylamino-acid-releasin 99.9 7.3E-22 2.5E-26 178.1 21.2 223 20-275 21-267 (582)
145 2ojh_A Uncharacterized protein 99.9 6.6E-21 2.3E-25 156.1 24.6 209 37-275 17-238 (297)
146 1xfd_A DIP, dipeptidyl aminope 99.9 7.2E-22 2.4E-26 182.4 20.5 240 21-271 17-323 (723)
147 2oit_A Nucleoporin 214KDA; NH2 99.9 1.3E-21 4.5E-26 170.2 21.0 212 67-292 37-278 (434)
148 1pby_B Quinohemoprotein amine 99.9 3.5E-20 1.2E-24 155.0 27.2 224 22-253 35-320 (337)
149 1ri6_A Putative isomerase YBHE 99.9 7.8E-20 2.7E-24 153.3 27.6 227 34-291 7-261 (343)
150 2oit_A Nucleoporin 214KDA; NH2 99.9 8.3E-21 2.8E-25 165.2 21.5 202 20-244 36-279 (434)
151 2z3z_A Dipeptidyl aminopeptida 99.9 5.7E-20 2E-24 169.3 25.7 241 23-274 28-376 (706)
152 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-20 8.3E-25 172.1 22.8 269 14-291 51-392 (723)
153 1jof_A Carboxy-CIS,CIS-muconat 99.9 4.3E-19 1.5E-23 151.0 28.3 245 20-291 39-340 (365)
154 3pe7_A Oligogalacturonate lyas 99.9 3.3E-19 1.1E-23 152.4 27.6 269 11-291 21-381 (388)
155 3o4h_A Acylamino-acid-releasin 99.9 9.1E-20 3.1E-24 164.5 22.5 227 14-275 57-303 (582)
156 3u4y_A Uncharacterized protein 99.8 2.9E-18 1E-22 143.4 28.7 200 74-273 5-240 (331)
157 3vgz_A Uncharacterized protein 99.8 3.6E-18 1.2E-22 143.9 28.6 214 66-281 40-300 (353)
158 1z68_A Fibroblast activation p 99.8 1.8E-20 6.1E-25 173.0 15.1 239 25-272 20-330 (719)
159 3hfq_A Uncharacterized protein 99.8 7.4E-18 2.5E-22 142.0 29.9 218 17-247 82-323 (347)
160 1jmx_B Amine dehydrogenase; ox 99.8 2.5E-18 8.6E-23 144.5 25.7 222 22-253 44-335 (349)
161 1q7f_A NHL, brain tumor CG1071 99.8 9E-17 3.1E-21 131.7 31.9 241 18-292 27-280 (286)
162 4a5s_A Dipeptidyl peptidase 4 99.8 8.1E-18 2.8E-22 155.9 23.9 241 21-274 17-340 (740)
163 3fvz_A Peptidyl-glycine alpha- 99.8 1.9E-16 6.5E-21 132.7 29.2 248 20-291 23-321 (329)
164 3c5m_A Oligogalacturonate lyas 99.8 1.7E-17 6E-22 141.8 23.0 243 23-274 38-371 (396)
165 3scy_A Hypothetical bacterial 99.8 3.5E-16 1.2E-20 132.5 30.1 226 19-262 98-360 (361)
166 3azo_A Aminopeptidase; POP fam 99.8 2.6E-17 8.8E-22 150.5 22.8 241 12-277 15-316 (662)
167 1z68_A Fibroblast activation p 99.8 3E-18 1E-22 158.2 16.5 231 23-274 62-376 (719)
168 2oiz_A Aromatic amine dehydrog 99.8 6.6E-16 2.3E-20 131.1 28.9 243 15-266 46-360 (361)
169 3e5z_A Putative gluconolactona 99.8 6.2E-15 2.1E-19 121.4 30.8 229 14-274 21-277 (296)
170 1jof_A Carboxy-CIS,CIS-muconat 99.7 3.1E-15 1.1E-19 127.1 28.7 235 35-290 5-289 (365)
171 2dg1_A DRP35, lactonase; beta 99.7 2.9E-14 9.7E-19 119.3 33.9 233 15-275 39-301 (333)
172 2gop_A Trilobed protease; beta 99.7 5.1E-15 1.7E-19 124.5 25.6 215 21-275 59-321 (347)
173 3azo_A Aminopeptidase; POP fam 99.7 1.1E-15 3.6E-20 139.8 22.7 238 13-274 60-357 (662)
174 2oiz_A Aromatic amine dehydrog 99.7 1.8E-14 6.2E-19 122.2 28.1 243 31-282 14-332 (361)
175 1rwi_B Serine/threonine-protei 99.7 4.1E-14 1.4E-18 114.7 26.1 236 22-291 25-263 (270)
176 2xdw_A Prolyl endopeptidase; a 99.7 7.6E-14 2.6E-18 128.7 29.5 228 18-272 122-398 (710)
177 4a5s_A Dipeptidyl peptidase 4 99.7 5.3E-15 1.8E-19 137.1 20.0 243 24-274 65-383 (740)
178 3fvz_A Peptidyl-glycine alpha- 99.7 7.9E-14 2.7E-18 116.7 25.0 205 18-242 88-321 (329)
179 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4.5E-13 1.6E-17 110.8 28.1 231 16-273 13-287 (314)
180 2bkl_A Prolyl endopeptidase; m 99.6 3.5E-14 1.2E-18 130.6 23.2 225 18-272 118-381 (695)
181 3no2_A Uncharacterized protein 99.6 5.5E-13 1.9E-17 108.8 27.6 218 30-272 3-231 (276)
182 3pe7_A Oligogalacturonate lyas 99.6 2.3E-14 8E-19 122.2 20.3 210 61-272 25-308 (388)
183 2z2n_A Virginiamycin B lyase; 99.6 5.4E-12 1.9E-16 103.4 33.3 242 18-289 12-261 (299)
184 1q7f_A NHL, brain tumor CG1071 99.6 8.5E-13 2.9E-17 107.9 27.0 198 18-243 74-280 (286)
185 3dsm_A Uncharacterized protein 99.6 5.1E-13 1.7E-17 111.8 25.2 219 21-271 44-285 (328)
186 2gop_A Trilobed protease; beta 99.6 2.7E-13 9.1E-18 113.9 23.5 211 21-275 15-283 (347)
187 2dg1_A DRP35, lactonase; beta 99.6 2.8E-13 9.7E-18 113.2 23.3 233 22-281 7-260 (333)
188 1qks_A Cytochrome CD1 nitrite 99.6 1.9E-11 6.6E-16 109.2 33.3 237 30-272 165-458 (567)
189 1yr2_A Prolyl oligopeptidase; 99.6 1.2E-12 4.1E-17 121.3 26.2 225 18-271 160-424 (741)
190 2mad_H Methylamine dehydrogena 99.6 4.1E-11 1.4E-15 101.9 32.1 248 27-282 27-348 (373)
191 3e5z_A Putative gluconolactona 99.5 2.8E-12 9.7E-17 105.4 23.0 205 13-245 61-288 (296)
192 3no2_A Uncharacterized protein 99.5 2.2E-12 7.5E-17 105.2 21.8 189 79-291 5-203 (276)
193 2xdw_A Prolyl endopeptidase; a 99.5 4.2E-12 1.4E-16 117.1 25.8 227 30-275 81-357 (710)
194 3c5m_A Oligogalacturonate lyas 99.5 1.1E-12 3.8E-17 111.9 20.2 203 69-274 38-303 (396)
195 2qc5_A Streptogramin B lactona 99.5 2.6E-10 9E-15 93.3 33.6 243 18-289 17-266 (300)
196 3g4e_A Regucalcin; six bladed 99.5 5.4E-11 1.9E-15 97.9 29.5 227 20-275 12-263 (297)
197 3dsm_A Uncharacterized protein 99.5 6.5E-12 2.2E-16 105.0 23.8 212 40-273 15-244 (328)
198 2z2n_A Virginiamycin B lyase; 99.5 1.9E-10 6.4E-15 94.1 32.2 224 19-272 55-284 (299)
199 1qks_A Cytochrome CD1 nitrite 99.5 9.7E-11 3.3E-15 104.7 31.7 249 21-272 197-521 (567)
200 3hrp_A Uncharacterized protein 99.5 7.1E-11 2.4E-15 101.7 29.8 239 21-291 131-409 (409)
201 3c75_H MADH, methylamine dehyd 99.5 2.4E-11 8.1E-16 104.4 24.6 247 30-282 82-400 (426)
202 1xip_A Nucleoporin NUP159; bet 99.5 2E-12 6.9E-17 109.6 17.5 172 68-273 39-233 (388)
203 2bkl_A Prolyl endopeptidase; m 99.5 5.8E-12 2E-16 115.9 21.5 225 29-275 76-340 (695)
204 2qe8_A Uncharacterized protein 99.5 4.9E-11 1.7E-15 100.3 24.2 267 21-291 17-334 (343)
205 3sjl_D Methylamine dehydrogena 99.4 8.7E-11 3E-15 99.3 25.1 249 27-282 39-361 (386)
206 1rwi_B Serine/threonine-protei 99.4 2.2E-11 7.4E-16 98.5 20.7 200 20-245 66-266 (270)
207 3dr2_A Exported gluconolactona 99.4 5.3E-10 1.8E-14 92.3 29.0 230 12-274 36-297 (305)
208 3sjl_D Methylamine dehydrogena 99.4 2.7E-10 9.1E-15 96.3 27.3 234 26-264 83-384 (386)
209 2qc5_A Streptogramin B lactona 99.4 2.6E-09 8.9E-14 87.3 32.7 224 20-271 61-289 (300)
210 1xip_A Nucleoporin NUP159; bet 99.4 1E-11 3.5E-16 105.3 17.7 174 22-229 39-230 (388)
211 2ghs_A AGR_C_1268P; regucalcin 99.4 2.1E-09 7.2E-14 89.6 30.9 221 22-275 50-293 (326)
212 3iuj_A Prolyl endopeptidase; h 99.4 7.9E-11 2.7E-15 108.3 22.2 226 18-274 126-391 (693)
213 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 7.2E-10 2.5E-14 91.4 24.1 203 19-243 69-299 (314)
214 1yr2_A Prolyl oligopeptidase; 99.3 4.6E-10 1.6E-14 104.0 25.3 226 29-275 115-384 (741)
215 2mad_H Methylamine dehydrogena 99.3 1.1E-08 3.6E-13 87.0 31.3 217 25-250 70-357 (373)
216 3c75_H MADH, methylamine dehyd 99.3 6.7E-09 2.3E-13 89.2 25.5 233 25-264 122-423 (426)
217 2ece_A 462AA long hypothetical 99.3 6.1E-09 2.1E-13 88.9 24.7 222 30-272 93-399 (462)
218 3g4e_A Regucalcin; six bladed 99.3 3.8E-09 1.3E-13 86.8 23.1 191 19-230 52-259 (297)
219 3dr2_A Exported gluconolactona 99.2 3.8E-09 1.3E-13 87.1 22.0 196 15-237 80-301 (305)
220 3hrp_A Uncharacterized protein 99.2 1.5E-08 5.2E-13 87.2 24.5 205 26-241 176-408 (409)
221 3nol_A Glutamine cyclotransfer 99.2 3.4E-08 1.2E-12 78.4 24.3 180 68-273 44-244 (262)
222 2iwa_A Glutamine cyclotransfer 99.2 3.1E-08 1.1E-12 79.4 24.0 182 68-273 22-225 (266)
223 1mda_H Methylamine dehydrogena 99.2 4.7E-09 1.6E-13 88.6 20.2 238 35-286 35-348 (368)
224 3nok_A Glutaminyl cyclase; bet 99.2 2.1E-08 7.3E-13 79.6 22.1 180 67-273 55-254 (268)
225 3mbr_X Glutamine cyclotransfer 99.1 1.1E-07 3.8E-12 74.8 24.1 181 67-273 21-223 (243)
226 2ghs_A AGR_C_1268P; regucalcin 99.1 4.3E-08 1.5E-12 81.6 23.1 187 20-230 89-289 (326)
227 2hz6_A Endoplasmic reticulum t 99.1 2.4E-11 8.3E-16 103.2 3.1 187 79-291 9-200 (369)
228 2iwa_A Glutamine cyclotransfer 99.1 1.4E-07 4.7E-12 75.7 24.3 209 13-244 12-238 (266)
229 1mda_H Methylamine dehydrogena 99.1 1.8E-08 6.1E-13 85.1 19.8 227 25-263 69-366 (368)
230 2qe8_A Uncharacterized protein 99.1 1.2E-08 4.1E-13 85.6 18.4 205 18-236 64-314 (343)
231 1npe_A Nidogen, entactin; glyc 99.1 1.4E-06 4.7E-11 70.2 29.8 220 21-266 36-263 (267)
232 2hz6_A Endoplasmic reticulum t 99.1 7.1E-11 2.4E-15 100.3 4.5 202 31-266 8-216 (369)
233 3iuj_A Prolyl endopeptidase; h 99.0 4.8E-08 1.6E-12 89.8 21.7 189 64-275 126-347 (693)
234 1fwx_A Nitrous oxide reductase 99.0 8.1E-08 2.8E-12 84.8 21.7 237 30-273 99-407 (595)
235 2ece_A 462AA long hypothetical 99.0 6.5E-07 2.2E-11 76.5 26.2 191 76-291 93-351 (462)
236 1kb0_A Quinohemoprotein alcoho 99.0 4.6E-07 1.6E-11 82.9 27.0 198 71-270 247-536 (677)
237 1kb0_A Quinohemoprotein alcoho 98.9 3.6E-07 1.2E-11 83.6 23.5 244 31-290 127-514 (677)
238 1yiq_A Quinohemoprotein alcoho 98.9 2.5E-07 8.5E-12 84.8 22.3 245 32-291 121-513 (689)
239 3nol_A Glutamine cyclotransfer 98.9 6.9E-07 2.4E-11 70.9 21.6 190 14-231 35-243 (262)
240 1yiq_A Quinohemoprotein alcoho 98.9 8.2E-07 2.8E-11 81.4 24.7 201 71-273 239-538 (689)
241 3nok_A Glutaminyl cyclase; bet 98.9 1.7E-06 5.7E-11 68.8 22.5 193 14-232 47-255 (268)
242 3mbr_X Glutamine cyclotransfer 98.8 5.7E-06 2E-10 65.1 23.4 195 13-232 12-224 (243)
243 3q7m_A Lipoprotein YFGL, BAMB; 98.8 7.4E-06 2.5E-10 69.3 25.1 232 31-277 102-371 (376)
244 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.8E-10 64.8 25.0 191 33-245 2-200 (267)
245 1fwx_A Nitrous oxide reductase 98.8 8.2E-08 2.8E-12 84.8 12.9 203 77-292 100-361 (595)
246 1k3i_A Galactose oxidase precu 98.7 5.6E-06 1.9E-10 75.6 24.8 247 25-273 190-530 (656)
247 3q7m_A Lipoprotein YFGL, BAMB; 98.7 3.8E-05 1.3E-09 64.8 27.1 236 31-281 52-334 (376)
248 2fp8_A Strictosidine synthase; 98.7 4.7E-05 1.6E-09 62.9 25.9 205 21-252 19-277 (322)
249 2fp8_A Strictosidine synthase; 98.5 0.00012 4.1E-09 60.4 24.6 196 22-242 81-312 (322)
250 2ad6_A Methanol dehydrogenase 98.5 2.2E-05 7.6E-10 70.3 21.4 243 32-291 115-502 (571)
251 2p4o_A Hypothetical protein; p 98.5 0.00027 9.4E-09 57.9 29.5 232 21-274 32-278 (306)
252 3qqz_A Putative uncharacterize 98.5 0.00022 7.5E-09 56.7 25.1 198 61-271 21-241 (255)
253 1kv9_A Type II quinohemoprotei 98.5 2.2E-05 7.5E-10 71.7 21.2 236 32-284 117-488 (668)
254 2xe4_A Oligopeptidase B; hydro 98.4 0.00016 5.5E-09 67.0 25.4 113 22-140 175-305 (751)
255 3hxj_A Pyrrolo-quinoline quino 98.4 8.8E-06 3E-10 67.2 15.0 226 25-291 24-251 (330)
256 3hxj_A Pyrrolo-quinoline quino 98.4 1.5E-05 5.1E-10 65.8 15.6 221 21-282 60-282 (330)
257 1kv9_A Type II quinohemoprotei 98.4 0.00021 7.2E-09 65.3 24.3 199 72-272 235-520 (668)
258 1w6s_A Methanol dehydrogenase 98.3 0.00029 9.9E-09 63.3 23.8 110 32-145 62-197 (599)
259 2xe4_A Oligopeptidase B; hydro 98.3 0.00016 5.3E-09 67.1 21.6 158 68-243 175-354 (751)
260 3tc9_A Hypothetical hydrolase; 98.3 0.0016 5.4E-08 56.2 27.9 154 22-200 138-300 (430)
261 2ad6_A Methanol dehydrogenase 98.2 0.00062 2.1E-08 60.9 24.0 182 90-272 273-525 (571)
262 3v64_C Agrin; beta propeller, 98.2 0.002 7E-08 53.8 25.6 198 20-244 33-235 (349)
263 3v64_C Agrin; beta propeller, 98.2 0.0022 7.6E-08 53.6 27.3 205 21-250 73-282 (349)
264 3v65_B Low-density lipoprotein 98.2 0.0025 8.7E-08 54.0 28.0 206 21-251 116-326 (386)
265 2ism_A Putative oxidoreductase 98.1 0.0026 8.7E-08 53.3 23.9 102 20-127 30-153 (352)
266 1flg_A Protein (quinoprotein e 98.1 0.0035 1.2E-07 56.2 25.5 111 180-290 331-523 (582)
267 3v65_B Low-density lipoprotein 98.1 0.0039 1.3E-07 52.9 24.0 195 23-244 79-278 (386)
268 1flg_A Protein (quinoprotein e 98.0 0.0013 4.4E-08 59.0 21.5 183 89-272 291-548 (582)
269 4a2l_A BT_4663, two-component 98.0 0.0088 3E-07 55.7 31.4 240 23-271 175-469 (795)
270 4a2l_A BT_4663, two-component 98.0 0.01 3.4E-07 55.3 33.0 239 20-271 309-603 (795)
271 1w6s_A Methanol dehydrogenase 97.9 0.0033 1.1E-07 56.5 22.3 182 89-272 278-535 (599)
272 2p4o_A Hypothetical protein; p 97.9 0.0054 1.8E-07 50.1 25.3 190 68-280 33-238 (306)
273 2p9w_A MAL S 1 allergenic prot 97.9 0.0019 6.7E-08 53.0 18.8 174 62-244 8-216 (334)
274 2xbg_A YCF48-like protein; pho 97.9 0.0064 2.2E-07 50.2 25.1 222 20-272 35-268 (327)
275 4hw6_A Hypothetical protein, I 97.9 0.0087 3E-07 51.6 29.0 199 22-245 140-375 (433)
276 3tc9_A Hypothetical hydrolase; 97.9 0.0023 7.9E-08 55.1 19.2 153 69-242 139-300 (430)
277 3m0c_C LDL receptor, low-densi 97.8 0.02 6.7E-07 53.2 27.7 210 20-250 423-639 (791)
278 3sov_A LRP-6, low-density lipo 97.8 0.0091 3.1E-07 49.2 25.8 206 21-250 35-245 (318)
279 3v9f_A Two-component system se 97.8 0.026 8.9E-07 52.4 30.0 241 20-271 312-600 (781)
280 3p5b_L Low density lipoprotein 97.7 0.016 5.4E-07 49.4 29.5 210 20-250 111-327 (400)
281 1ijq_A LDL receptor, low-densi 97.7 0.015 5.1E-07 47.7 31.5 209 20-250 29-245 (316)
282 3amr_A 3-phytase; beta-propell 97.6 0.019 6.6E-07 47.5 26.9 232 31-291 39-328 (355)
283 3qqz_A Putative uncharacterize 97.6 0.016 5.6E-07 45.9 24.5 210 14-241 20-251 (255)
284 1k3i_A Galactose oxidase precu 97.6 0.0027 9.3E-08 57.8 16.4 162 111-291 188-377 (656)
285 1n7d_A LDL receptor, low-densi 97.6 0.00097 3.3E-08 61.2 13.4 210 21-251 406-622 (699)
286 3amr_A 3-phytase; beta-propell 97.6 0.023 7.9E-07 47.0 22.6 188 80-291 41-262 (355)
287 3p5b_L Low density lipoprotein 97.6 0.028 9.4E-07 47.8 27.4 185 34-244 85-278 (400)
288 3m0c_C LDL receptor, low-densi 97.5 0.066 2.3E-06 49.7 27.6 180 41-245 403-591 (791)
289 3sov_A LRP-6, low-density lipo 97.4 0.041 1.4E-06 45.2 23.2 180 41-243 12-197 (318)
290 2xbg_A YCF48-like protein; pho 97.3 0.05 1.7E-06 44.8 24.6 221 20-275 79-313 (327)
291 1ijq_A LDL receptor, low-densi 97.3 0.051 1.8E-06 44.5 28.6 183 34-243 3-195 (316)
292 4hw6_A Hypothetical protein, I 97.3 0.069 2.4E-06 45.9 24.7 211 19-241 180-431 (433)
293 3a9g_A Putative uncharacterize 97.3 0.06 2.1E-06 44.9 24.9 235 20-272 28-330 (354)
294 3s94_A LRP-6, low-density lipo 97.3 0.1 3.5E-06 47.1 25.1 203 21-247 40-247 (619)
295 3pbp_A Nucleoporin NUP82; beta 97.2 0.046 1.6E-06 46.4 17.6 147 87-237 39-206 (452)
296 3kya_A Putative phosphatase; s 97.1 0.13 4.4E-06 44.9 23.7 115 21-138 186-340 (496)
297 3v9f_A Two-component system se 97.0 0.22 7.4E-06 46.2 31.4 239 21-271 211-512 (781)
298 4a0p_A LRP6, LRP-6, low-densit 96.9 0.22 7.7E-06 44.9 26.7 199 21-246 37-240 (628)
299 2p9w_A MAL S 1 allergenic prot 96.8 0.15 5.2E-06 41.8 22.2 203 23-245 15-267 (334)
300 2g8s_A Glucose/sorbosone dehyd 96.8 0.19 6.3E-06 41.9 24.7 217 20-236 17-347 (353)
301 1n7d_A LDL receptor, low-densi 96.7 0.011 3.8E-07 54.2 10.7 156 68-243 407-571 (699)
302 3kya_A Putative phosphatase; s 96.5 0.35 1.2E-05 42.2 29.5 210 22-245 140-411 (496)
303 3ii7_A Kelch-like protein 7; p 96.5 0.25 8.6E-06 39.9 17.7 227 33-291 13-271 (306)
304 2vpj_A Kelch-like protein 12; 96.5 0.26 8.9E-06 39.6 18.5 216 31-276 14-265 (301)
305 3sre_A PON1, serum paraoxonase 96.4 0.33 1.1E-05 40.4 23.8 100 172-274 166-287 (355)
306 2g8s_A Glucose/sorbosone dehyd 96.1 0.26 8.9E-06 41.0 15.0 147 109-270 18-214 (353)
307 2xn4_A Kelch-like protein 2; s 96.1 0.42 1.4E-05 38.4 17.8 186 79-291 62-275 (302)
308 1zgk_A Kelch-like ECH-associat 96.0 0.46 1.6E-05 38.4 17.0 105 181-291 168-286 (308)
309 1cru_A Protein (soluble quinop 96.0 0.41 1.4E-05 41.3 16.0 111 109-231 27-162 (454)
310 2vpj_A Kelch-like protein 12; 96.0 0.49 1.7E-05 38.0 16.9 187 31-245 62-280 (301)
311 3a9g_A Putative uncharacterize 95.8 0.41 1.4E-05 39.8 14.8 104 171-276 29-157 (354)
312 3sre_A PON1, serum paraoxonase 95.7 0.74 2.5E-05 38.3 22.6 209 23-242 52-297 (355)
313 2ism_A Putative oxidoreductase 95.7 0.75 2.6E-05 38.1 17.5 103 171-276 31-157 (352)
314 2xzh_A Clathrin heavy chain 1; 95.7 0.72 2.5E-05 37.8 17.2 135 130-293 49-190 (365)
315 3pbp_A Nucleoporin NUP82; beta 95.6 0.39 1.3E-05 40.8 13.9 112 22-134 67-207 (452)
316 3das_A Putative oxidoreductase 95.6 0.71 2.4E-05 38.2 15.2 111 167-277 28-163 (347)
317 1tl2_A L10, protein (tachylect 95.5 0.02 6.8E-07 44.1 5.1 94 172-271 42-152 (236)
318 3das_A Putative oxidoreductase 95.3 1.1 3.6E-05 37.2 23.9 109 16-127 27-158 (347)
319 2xn4_A Kelch-like protein 2; s 95.2 0.95 3.3E-05 36.3 15.6 188 31-245 61-278 (302)
320 1bpo_A Protein (clathrin); cla 95.1 1.4 4.9E-05 37.7 17.3 136 129-292 47-188 (494)
321 4a0p_A LRP6, LRP-6, low-densit 95.0 1.9 6.6E-05 38.9 28.5 199 21-246 340-552 (628)
322 3s94_A LRP-6, low-density lipo 94.9 2 7E-05 38.6 27.7 200 21-245 349-553 (619)
323 3s25_A Hypothetical 7-bladed b 94.6 1.4 4.9E-05 35.6 17.0 146 89-271 88-240 (302)
324 1cru_A Protein (soluble quinop 94.5 1.8 6.2E-05 37.3 15.4 107 169-275 25-165 (454)
325 4asc_A Kelch repeat and BTB do 94.4 1.6 5.5E-05 35.2 18.7 92 181-275 148-254 (315)
326 1tl2_A L10, protein (tachylect 94.4 0.87 3E-05 35.1 11.5 146 67-235 41-202 (236)
327 3ii7_A Kelch-like protein 7; p 94.3 1.7 5.8E-05 34.8 17.1 172 81-276 14-212 (306)
328 2zwa_A Leucine carboxyl methyl 94.0 1.8 6.2E-05 39.5 15.0 225 30-274 396-675 (695)
329 3sbq_A Nitrous-oxide reductase 93.8 0.52 1.8E-05 41.5 10.3 137 91-236 300-461 (638)
330 1zgk_A Kelch-like ECH-associat 93.7 2.2 7.7E-05 34.2 14.5 143 79-245 122-289 (308)
331 2uvk_A YJHT; unknown function, 93.7 2.2 7.4E-05 35.1 13.9 54 193-248 286-347 (357)
332 2be1_A Serine/threonine-protei 93.1 0.95 3.2E-05 37.4 10.5 117 121-253 11-140 (339)
333 2zwa_A Leucine carboxyl methyl 93.0 5.2 0.00018 36.5 18.8 194 79-291 398-634 (695)
334 3ei3_A DNA damage-binding prot 91.8 10 0.00035 36.9 30.2 224 22-274 515-757 (1158)
335 2wg3_C Hedgehog-interacting pr 91.3 3.8 0.00013 35.4 12.6 105 172-276 15-161 (463)
336 3s25_A Hypothetical 7-bladed b 90.6 5.8 0.0002 32.0 17.9 202 26-273 58-281 (302)
337 3sbq_A Nitrous-oxide reductase 90.4 9 0.00031 34.0 14.9 98 175-273 327-454 (638)
338 2xzh_A Clathrin heavy chain 1; 89.7 7.6 0.00026 31.9 26.8 204 29-241 75-330 (365)
339 2uvk_A YJHT; unknown function, 88.9 8.4 0.00029 31.4 16.9 94 181-275 200-327 (357)
340 4asc_A Kelch repeat and BTB do 88.3 8.6 0.0003 30.8 18.9 170 81-276 7-208 (315)
341 2woz_A Kelch repeat and BTB do 86.5 11 0.00038 30.1 20.5 93 180-275 157-264 (318)
342 1xi4_A Clathrin heavy chain; a 86.4 8.9 0.00031 38.1 12.2 111 176-292 71-188 (1630)
343 4gq2_M Nucleoporin NUP120; bet 86.3 23 0.00079 33.7 17.0 39 214-252 237-275 (950)
344 1xi4_A Clathrin heavy chain; a 86.2 29 0.001 34.7 18.3 182 29-221 74-309 (1630)
345 2be1_A Serine/threonine-protei 86.1 4.1 0.00014 33.5 8.7 121 80-209 11-138 (339)
346 2woz_A Kelch repeat and BTB do 84.4 14 0.00049 29.5 18.0 93 181-275 109-217 (318)
347 1bpo_A Protein (clathrin); cla 81.3 25 0.00087 30.2 27.4 204 29-241 74-329 (494)
348 3f7f_A Nucleoporin NUP120; nuc 81.0 3.6 0.00012 37.5 6.8 69 222-292 229-305 (729)
349 3uc1_A DNA gyrase subunit A; D 77.1 28 0.00097 28.3 18.9 166 22-200 96-278 (327)
350 3ei3_A DNA damage-binding prot 72.4 75 0.0026 31.0 30.0 110 68-200 515-635 (1158)
351 3zwu_A Alkaline phosphatase PH 71.9 18 0.00062 32.3 8.6 58 173-230 478-548 (592)
352 2wg3_C Hedgehog-interacting pr 71.5 49 0.0017 28.4 20.0 30 109-138 14-44 (463)
353 4gq2_M Nucleoporin NUP120; bet 70.3 76 0.0026 30.2 16.7 36 111-146 238-273 (950)
354 4a9v_A PHOX; hydrolase, beta-p 65.4 44 0.0015 29.7 9.5 58 173-230 478-548 (592)
355 4fhn_B Nucleoporin NUP120; pro 63.3 26 0.00088 34.1 8.5 36 173-208 240-275 (1139)
356 4a9v_A PHOX; hydrolase, beta-p 62.6 39 0.0013 30.0 8.7 59 214-272 477-549 (592)
357 1suu_A DNA gyrase subunit A; t 62.4 60 0.002 26.1 20.7 197 30-243 6-231 (312)
358 3no0_A DNA gyrase subunit A; D 56.4 72 0.0024 25.1 19.8 203 21-242 24-245 (276)
359 1wp5_A Topoisomerase IV; broke 55.3 82 0.0028 25.5 18.0 198 30-242 3-224 (323)
360 3zwu_A Alkaline phosphatase PH 53.9 49 0.0017 29.5 8.0 57 215-271 478-548 (592)
361 3no0_A DNA gyrase subunit A; D 50.9 89 0.003 24.6 18.5 121 20-142 67-199 (276)
362 3f7f_A Nucleoporin NUP120; nuc 44.6 46 0.0016 30.4 6.4 28 181-208 230-257 (729)
363 4fhn_B Nucleoporin NUP120; pro 41.0 2.6E+02 0.0089 27.1 18.3 39 214-252 239-277 (1139)
364 3al9_A Plexin-A2; beta-propell 39.8 96 0.0033 27.3 7.6 67 172-238 401-476 (539)
365 1suu_A DNA gyrase subunit A; t 32.3 1.9E+02 0.0066 23.1 22.4 167 22-201 48-231 (312)
366 1q47_A Semaphorin 3A; beta pro 28.2 1.5E+02 0.005 25.8 6.7 67 172-238 405-487 (495)
367 4hvt_A Ritya.17583.B, post-pro 26.3 3.7E+02 0.013 24.5 20.6 56 213-269 350-411 (711)
368 3oq4_A DBF4, protein DNA52; DD 24.4 12 0.00041 25.9 -0.6 11 283-293 81-91 (134)
369 1olz_A Semaphorin 4D; developm 24.3 3.1E+02 0.01 24.8 8.3 67 172-238 398-477 (663)
370 4gz8_A Semaphorin-3A; multi-do 22.8 2.8E+02 0.0096 25.1 7.7 54 185-238 432-495 (667)
371 3oky_B Putative uncharacterize 22.4 4.1E+02 0.014 23.5 8.5 68 172-239 404-496 (565)
372 3uc1_A DNA gyrase subunit A; D 21.8 3.2E+02 0.011 22.0 20.3 152 79-242 109-278 (327)
373 3nvq_A Semaphorin-7A; beta-pro 21.7 3.6E+02 0.012 24.0 8.0 57 183-239 381-445 (590)
374 3oq0_A DBF4, protein DNA52; DD 20.6 16 0.00054 25.9 -0.6 11 283-293 98-108 (151)
375 3qbz_A DDK kinase regulatory s 20.3 16 0.00056 26.1 -0.6 11 283-293 136-146 (160)
376 3b7f_A Glycosyl hydrolase, BNR 20.3 3.5E+02 0.012 22.0 23.4 27 68-94 116-143 (394)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.2e-43 Score=294.51 Aligned_cols=268 Identities=21% Similarity=0.302 Sum_probs=226.0
Q ss_pred cceeecCccccEEEEEECCC----CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 12 HSREYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
..+...+|.+.|.+++|+|+ +.+|+||+.|++|++|++.... ......+.+|...|.++.++++ ..++++++.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~ 100 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHT-LPIAASSSL 100 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSS-SSEEEEEET
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCC-CCEEEEEeC
Confidence 34556799999999999985 5689999999999999986421 2223457899999999999987 468999999
Q ss_pred CCeEEEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEE
Q 022716 88 DKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 165 (293)
|+.|++||+.++++...+.. ...+.+++|+|++++|++++.|+.+++||+++........ .+..+..+.|+|++..+.
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 180 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEE
Confidence 99999999999988776654 3456689999999999999999999999998876655443 345678888988877655
Q ss_pred Eec---------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716 166 LTT---------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224 (293)
Q Consensus 166 ~~~---------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 224 (293)
..+ +...+.+++|+|++++|++|+.|++|++||++.+.....+.+|..+|.+++|+|++
T Consensus 181 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 260 (321)
T 3ow8_A 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260 (321)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCC
Confidence 433 23457789999999999999999999999999999899999999999999999999
Q ss_pred CEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 225 DYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
++|++|+.|+.|++||+.+++.+..+. +...|.+++|+|++++|++++.| +.+|||++
T Consensus 261 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d--------~~i~vwd~ 319 (321)
T 3ow8_A 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD--------QEIHIYDC 319 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--------CCEEEEEC
T ss_pred CEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC--------CeEEEEeC
Confidence 999999999999999999999888774 56789999999999999999988 46777765
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.7e-43 Score=303.27 Aligned_cols=265 Identities=22% Similarity=0.405 Sum_probs=227.8
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
...+.+|.++|++++|+|++++|++|+.||+|++||+..... ...+.+|.+.|.+++|+|+ +.+|++|+.|++|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~----~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHS-GKLLASCSADMTIK 175 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC----CEEECCCSSCEEEEEECTT-SSEEEEEETTSCCC
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE----EEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEE
Confidence 456789999999999999999999999999999999975422 2357899999999999987 46899999999999
Q ss_pred EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEec--
Q 022716 93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT-- 168 (293)
Q Consensus 93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~-- 168 (293)
+||+.++++...+. +...+.+++|+|+++++++++.|++|++||+++........ +...+..+.+++.+..+...+
T Consensus 176 iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 99999988877665 34567889999999999999999999999999887665543 445577788887776555433
Q ss_pred -------------------CCCCEEEEEECCC--------------------CCEEEEecCCCcEEEEeCCCCEEEEEee
Q 022716 169 -------------------GNAGCYCIAIDPM--------------------GRYFAVGSADSLVSLWDISEMLCVRTFT 209 (293)
Q Consensus 169 -------------------~~~~~~~~~~~~~--------------------~~~l~~gs~d~~i~iwd~~~~~~~~~~~ 209 (293)
+...+.+++|+|+ +.+|++|+.|++|++||++++.++..+.
T Consensus 256 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence 3345788999996 6789999999999999999999999999
Q ss_pred ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEE
Q 022716 210 KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 288 (293)
Q Consensus 210 ~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~ 288 (293)
+|..+|.+++|+|+|++|++|+.|+.|++||..+++.+..+. +...|.+++|+|++++||+|+.| +.+|||
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D--------~~i~vW 407 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD--------QTVKVW 407 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT--------SEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC--------CcEEEE
Confidence 999999999999999999999999999999999988877765 45689999999999999999988 577888
Q ss_pred ee
Q 022716 289 GF 290 (293)
Q Consensus 289 ~~ 290 (293)
++
T Consensus 408 ~~ 409 (410)
T 1vyh_C 408 EC 409 (410)
T ss_dssp C-
T ss_pred eC
Confidence 65
No 3
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.9e-44 Score=304.45 Aligned_cols=277 Identities=17% Similarity=0.185 Sum_probs=210.2
Q ss_pred cCcccccccceeecCccccEEEEEECCCCCeEEEEeC------CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC
Q 022716 4 SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSV------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~------dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 77 (293)
+..+.++++......|...|.+++|||||++||+||. |+.|++|+...............+|...|.+++|+|+
T Consensus 26 ~~~~~w~~p~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d 105 (357)
T 4g56_B 26 SKGSAWGRPVTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE 105 (357)
T ss_dssp --------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT
T ss_pred ccccccCCCCCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC
Confidence 3456666666666789999999999999999999997 7889999876432222222234578899999999996
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeeee-----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccce
Q 022716 78 HADLIATASGDKTVRLWDARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYE 151 (293)
Q Consensus 78 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~ 151 (293)
+ .+++++.|++|++||+.+++..... .+...+.+++|+|++++|++++.|++|++||+++.+.+.... +...
T Consensus 106 ~--~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~ 183 (357)
T 4g56_B 106 K--GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE 183 (357)
T ss_dssp T--EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred C--CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC
Confidence 3 5678899999999999887654321 234568899999999999999999999999999888776654 4567
Q ss_pred eeeeEEecCCCEEEEe-cC-----------------------CCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCCEEEE
Q 022716 152 VNEIAWNMTGEMFFLT-TG-----------------------NAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVR 206 (293)
Q Consensus 152 ~~~v~~~~~~~~~~~~-~~-----------------------~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~ 206 (293)
+..+.|++.++.+++. .. ...+.+++|+|+ +.+|++|+.|+.|++||+++++++.
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~ 263 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ 263 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE
Confidence 8889998876533222 11 134789999998 5689999999999999999988888
Q ss_pred EeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECC-CCCeEEEEEcCCCCCCCCcce
Q 022716 207 TFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP-KYNLLAYAGDDKNKYQADEGV 284 (293)
Q Consensus 207 ~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp-~~~~la~~~~d~~~~~~~~~~ 284 (293)
.+.+|..+|.+++|+|++ ++||+|+.|+.|+|||..+++.+..+.+...|++|+||| ++.+||++|.|+ .
T Consensus 264 ~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg--------~ 335 (357)
T 4g56_B 264 TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDH--------K 335 (357)
T ss_dssp EECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTS--------C
T ss_pred EEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCC--------e
Confidence 999999999999999987 579999999999999999998888888888999999999 789999999985 5
Q ss_pred EEEEee
Q 022716 285 FRIYGF 290 (293)
Q Consensus 285 ~~~~~~ 290 (293)
++||++
T Consensus 336 v~iW~~ 341 (357)
T 4g56_B 336 VLHHHL 341 (357)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 566665
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.8e-42 Score=293.22 Aligned_cols=246 Identities=17% Similarity=0.219 Sum_probs=204.1
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
+|...|.+++|+|++ .|++|+.||+|++||++...........+.+|.+.|++++|+|+ +.+|++|+.|++|++||+.
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECC
Confidence 456789999999985 78899999999999998654433344456799999999999997 4789999999999999999
Q ss_pred CCeeeeeee-ecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 98 SGKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 98 ~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
+++++..+. +...+.+++|+|++. .+++++.|++|++||+++.++...... ..+...+.+
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------~~~~~~~~~ 219 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------SAPGYLPTS 219 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------------------CCCEEE
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec------------------ceeecccee
Confidence 999888776 456678899999885 678999999999999998776544321 112334678
Q ss_pred EEECCC-CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716 176 IAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQIPCR 253 (293)
Q Consensus 176 ~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~~~~~ 253 (293)
++++|+ ++++++|+.|++|++||+++++++.++.+|...|.+++|+|++ ++||+|+.|+.|+|||..+++.+....|.
T Consensus 220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~ 299 (344)
T 4gqb_B 220 LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHR 299 (344)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCS
T ss_pred eeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCC
Confidence 899985 5789999999999999999999999999999999999999998 57999999999999999998877666677
Q ss_pred CCcceeEECCCCC-eEEEEEcCCCCCCCCcceEEEEeee
Q 022716 254 AAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 254 ~~i~~~~~sp~~~-~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
..|++++|+|++. +|+++|.|+ ++++|.++
T Consensus 300 ~~V~~v~~sp~~~~llas~s~D~--------~v~~w~v~ 330 (344)
T 4gqb_B 300 DFVRDATWSPLNHSLLTTVGWDH--------QVVHHVVP 330 (344)
T ss_dssp SCEEEEEECSSSTTEEEEEETTS--------CEEEEECC
T ss_pred CCEEEEEEeCCCCeEEEEEcCCC--------eEEEEECC
Confidence 8999999999986 577899884 67777765
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-41 Score=282.25 Aligned_cols=267 Identities=17% Similarity=0.196 Sum_probs=222.4
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|.+.|.+++|+|++++|++|+.||+|++||+... .....+..|..+|.++.|+|+ +++|++|+.|+.|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~i 79 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ----VEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRI 79 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC----ceeEEeeccCCcEEEEEEeCC-CCEEEEECCCCEE
Confidence 45678899999999999999999999999999999999743 233457789999999999997 4789999999999
Q ss_pred EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee-e-cccceeeeeEEecC-CCEEEEe
Q 022716 92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-R-KFGYEVNEIAWNMT-GEMFFLT 167 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~-~-~~~~~~~~v~~~~~-~~~~~~~ 167 (293)
++||+.++++...+.. ...+.+++|+|+++++++|+.|++|++||+++...... . .+...+..+.|+|. +..+...
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 9999999988777664 45678899999999999999999999999987643322 2 34567888999984 4443332
Q ss_pred cC----------------------CCCEEEEEECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC
Q 022716 168 TG----------------------NAGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 223 (293)
Q Consensus 168 ~~----------------------~~~~~~~~~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 223 (293)
+. ...+.++++.| ++.+|++|+.|++|++||++++.++.++.+|...|.+++|+|+
T Consensus 160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (304)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence 21 23466777776 6789999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCC--eEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 224 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYN--LLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~--~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+++|++|+.|+.|++||..+++.++.+.. ...+.+++|+|++. ++|+|++|+ +.+|.+++
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g---------~~~~~~~~ 302 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG---------FTVLSLGN 302 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE---------EEEEECC-
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc---------eEEEEecc
Confidence 99999999999999999999998888764 45789999999874 588887664 66666654
No 6
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-41 Score=286.17 Aligned_cols=276 Identities=23% Similarity=0.360 Sum_probs=215.1
Q ss_pred cccccccceeecCccccEEEEEE-----CC-CCCeEEEEeCCCcEEEeecCCCCCC---ceeEEEeeCCcCCeeEEEEcC
Q 022716 6 IPFKNLHSREYTGHKKKVHSVAW-----NC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDP 76 (293)
Q Consensus 6 ~~~~~~~~~~~~~h~~~v~~l~~-----s~-~~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~h~~~i~~~~~~~ 76 (293)
+++.......+.||.+.|++++| ++ ++++|+||+.|++|++||+...... ......+.+|...|.+++|+|
T Consensus 7 ~~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~ 86 (343)
T 2xzm_R 7 LDIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ 86 (343)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS
T ss_pred cceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC
Confidence 44545566789999999999999 76 8999999999999999999753221 122345789999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee---ccccee
Q 022716 77 KHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KFGYEV 152 (293)
Q Consensus 77 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~---~~~~~~ 152 (293)
+ ..+++||+.|++|++||++++++...+. +...+.+++|+|+++++++++.|+++++||++........ .+...+
T Consensus 87 ~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 87 E-NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp S-TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence 6 4689999999999999999998877665 4567789999999999999999999999999743322221 233446
Q ss_pred eeeEEecCC----------CEE--------------------EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC-
Q 022716 153 NEIAWNMTG----------EMF--------------------FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE- 201 (293)
Q Consensus 153 ~~v~~~~~~----------~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~- 201 (293)
..+.|+|.+ ..+ .+..+...+.+++|+|++++|++|+.|+.|++||+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 667776654 222 1234566789999999999999999999999999943
Q ss_pred CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--EEe------------cCCCcceeEECCCCCe
Q 022716 202 MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--QIP------------CRAAMNSVEWNPKYNL 267 (293)
Q Consensus 202 ~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~--~~~------------~~~~i~~~~~sp~~~~ 267 (293)
......+ .+...|.+++|+|++++++++ .|+.|++|++.+++... .+. +...+.+++|+|++++
T Consensus 246 ~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 246 TYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp SSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred cccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 3223333 345679999999999888755 57789999998765432 332 3346889999999999
Q ss_pred EEEEEcCCCCCCCCcceEEEEeeec
Q 022716 268 LAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 268 la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
||+|+.| +++|+|+++.
T Consensus 324 l~sg~~D--------g~v~~w~~~~ 340 (343)
T 2xzm_R 324 LFAGFTD--------GVIRTFSFET 340 (343)
T ss_dssp EEEEETT--------SEEEEEEEEE
T ss_pred EEEecCC--------ceEEEEEEEc
Confidence 9999988 5889998874
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.4e-40 Score=278.90 Aligned_cols=241 Identities=22% Similarity=0.288 Sum_probs=205.4
Q ss_pred cceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 12 HSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
....+.||.+.|.+++|+|++ ++|+||+.|++|++|++...... ......+.+|...|.+++|+|+ +.+|++|+.|+
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~ 87 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDK 87 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-CCEEEEEeCCC
Confidence 345788999999999999965 79999999999999998642211 1223457899999999999997 46899999999
Q ss_pred eEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 90 TVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
+|++||+.++++...+. +...+.+++|+|++..+++++.|+++++||++...... +..
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~---------------------~~~ 146 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT---------------------LLG 146 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEE---------------------ECC
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE---------------------Eec
Confidence 99999999998877765 45667889999999999999999999999987532211 223
Q ss_pred CCCCEEEEEECCC------CCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 169 GNAGCYCIAIDPM------GRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 169 ~~~~~~~~~~~~~------~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
+...+.++.+.|. +..+++++.|+.|++||++++.....+.+|..+|.+++|+|+|++|++|+.|+.|++||+.
T Consensus 147 h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 4455667777764 5589999999999999999999888999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716 243 TGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 243 ~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
+++.+..+....+|.+++|+|++.+|++++.+
T Consensus 227 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~ 258 (319)
T 3frx_A 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT 258 (319)
T ss_dssp TTEEEEEEECCSCEEEEEECSSSSEEEEEETT
T ss_pred CCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC
Confidence 99988888888899999999999999998765
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.6e-40 Score=278.13 Aligned_cols=260 Identities=16% Similarity=0.225 Sum_probs=215.8
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|.+.|.+++|+|++++|++|+.||+|++||+.... ....+..|...|.+++|+|+ +.+|++|+.|+.+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~----~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v 121 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN----KVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNIC 121 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----EEEEEECSSSCEEEEEECTT-SSEEEEEETTCEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC----cceEeecCCccEEEEEECCC-CCEEEEEeCCCeE
Confidence 346788999999999999999999999999999999987432 23456789999999999997 4689999999999
Q ss_pred EEEeCCCCe----eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEE
Q 022716 92 RLWDARSGK----CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 92 ~vwd~~~~~----~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 165 (293)
++||+.+.. ....+. +.+.+.++.|.+++. +++++.|+++++||+++........ +...+..+.|+|.+..+.
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence 999997653 222232 345567788988764 8999999999999999887766554 456788899988877655
Q ss_pred Eec---------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--cCCCeeEEEEcc
Q 022716 166 LTT---------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSH 222 (293)
Q Consensus 166 ~~~---------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp 222 (293)
..+ +...+.+++|+|++++|++|+.|++|++||++.+..+..+.. +...|.+++|+|
T Consensus 201 sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 332 345688999999999999999999999999999887766643 234799999999
Q ss_pred CCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCC
Q 022716 223 TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNK 277 (293)
Q Consensus 223 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~ 277 (293)
+|++|++|+.|+.|++||..+++.+..+. +..+|.+++|+|++.+||+|+.|+.+
T Consensus 281 ~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 99999999999999999999998887765 56789999999999999999998533
No 9
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-40 Score=275.98 Aligned_cols=245 Identities=21% Similarity=0.343 Sum_probs=192.6
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEEE
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRL 93 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~v 93 (293)
.+.+|.+.|.+++|+|+|++||+|+.|++|++|++..... .....+.+|.+.|.+++|+|. .+.+|+||+.|++|++
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~--~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH--KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB--CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc--EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 4679999999999999999999999999999999964211 122467899999999999763 3578999999999999
Q ss_pred EeCCCCee--eeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 94 WDARSGKC--SQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 94 wd~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
||+.+++. ...+. +...+.+++|+|+ +..|++++.|+++++||++....... ..+..
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~------------------~~~~~ 143 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP------------------IIIDA 143 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC------------------EEEEC
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee------------------eeeec
Confidence 99987743 22232 3456788999997 88999999999999999976432110 11223
Q ss_pred CCCCEEEEEECCC-------------CCEEEEecCCCcEEEEeCCCCE----EEEEeeccCCCeeEEEEccCC---CEEE
Q 022716 169 GNAGCYCIAIDPM-------------GRYFAVGSADSLVSLWDISEML----CVRTFTKLEWPVRTISFSHTG---DYIA 228 (293)
Q Consensus 169 ~~~~~~~~~~~~~-------------~~~l~~gs~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~---~~l~ 228 (293)
+...+.+++|+|+ +++|++|+.|++|++||++++. ....+.+|..+|.+++|+|++ ++||
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 3445556666664 5799999999999999987653 566788999999999999995 8999
Q ss_pred EecCCCcEEEEEcCCCC---EEEEE---ecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 229 SASEDLFIDISNVHTGR---TVHQI---PCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~---~~~~~---~~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
+|+.|+.|++||+.++. ....+ .+...|.+++|+|++++||+++.|+.+++
T Consensus 224 s~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp EEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred EEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 99999999999998743 12222 23567899999999999999998854333
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.9e-41 Score=287.02 Aligned_cols=253 Identities=18% Similarity=0.289 Sum_probs=203.5
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCce---------------------------------
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV--------------------------------- 57 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~--------------------------------- 57 (293)
...+.+.||.+.|.+++|+|++++|+||+.||+|++||+........
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 34577899999999999999999999999999999999754210000
Q ss_pred ------------eEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee------ecCceEEEEEcC-
Q 022716 58 ------------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE------LSGENINITYKP- 118 (293)
Q Consensus 58 ------------~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~------~~~~~~~~~~~~- 118 (293)
....+.+|...|.++.|.|.+...|++|+.|++|++||+.++++...+. +...+.++.+.|
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 0011346777777777777656678899999999999999887765542 234567888876
Q ss_pred CCCEEEEEeCCCeEEEEEcccc-ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEE
Q 022716 119 DGTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLW 197 (293)
Q Consensus 119 ~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iw 197 (293)
++..+++|+.|+++++||++.. .+.. .+..+...+.+++|+|++++|++|+.|++|++|
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~--------------------~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lw 276 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVR--------------------TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCE--------------------EECCCSSCCCEEEECTTSSEEEEECSSSCEEEE
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceE--------------------EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEE
Confidence 8899999999999999999743 2221 123456678899999999999999999999999
Q ss_pred eCCCCEEEEEeeccC-------CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE-----ecCCCcceeEECCCC
Q 022716 198 DISEMLCVRTFTKLE-------WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-----PCRAAMNSVEWNPKY 265 (293)
Q Consensus 198 d~~~~~~~~~~~~~~-------~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~-----~~~~~i~~~~~sp~~ 265 (293)
|++++.++..+..+. ..|.+++|+|+|++|++|+.|+.|++||..+++.+..+ .+...|++++|+|++
T Consensus 277 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 277 DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp ETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred ECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence 999998887775543 24899999999999999999999999999998887766 356689999999999
Q ss_pred CeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 266 NLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 266 ~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
++||+||.| +++|||+++
T Consensus 357 ~~l~sgs~D--------~~i~iW~~~ 374 (380)
T 3iz6_a 357 SALCTGSWD--------KNLKIWAFS 374 (380)
T ss_dssp SEEEEECTT--------SCEEEEECC
T ss_pred CEEEEeeCC--------CCEEEEecC
Confidence 999999988 467788775
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-39 Score=274.70 Aligned_cols=266 Identities=18% Similarity=0.254 Sum_probs=216.9
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
...+.+.||.+.|.+++|+|++++|+||+.||+|++||..... ....+..|...|.+++|+|++ ..|++++.|+.
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~----~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~ 129 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN----KEHAVTMPCTWVMACAYAPSG-CAIACGGLDNK 129 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECSSSCCCEEEECTTS-SEEEEESTTSE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----cceEEecCCCCEEEEEECCCC-CEEEEeeCCCC
Confidence 4557789999999999999999999999999999999986432 223466788899999999974 68999999999
Q ss_pred EEEEeCCCCe------eeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecC--
Q 022716 91 VRLWDARSGK------CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT-- 160 (293)
Q Consensus 91 i~vwd~~~~~------~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~-- 160 (293)
+++|++.... ....+ .+...+.+++|+|++..+++++.|+++++||+++.+.+.... +...+..+.|.+.
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 9999986431 11222 244567789999999999999999999999999887766543 4556666666653
Q ss_pred CCEEEE---------------------ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--CCCeeE
Q 022716 161 GEMFFL---------------------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRT 217 (293)
Q Consensus 161 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--~~~v~~ 217 (293)
+..+.. ..+...+.+++|+|++.+|++|+.|++|++||++....+..+..+ ...+.+
T Consensus 210 g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS 289 (354)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE
Confidence 333332 223456889999999999999999999999999998777666543 357899
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEe
Q 022716 218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYG 289 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~ 289 (293)
++|+|++++|++|+.|+.|++||+.+++.+..+. +..+|.+++|+|++++||+|+.|+ ++|||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~--------~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH--------TLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS--------EEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC--------CEEecC
Confidence 9999999999999999999999999998887764 567899999999999999999884 677774
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.9e-39 Score=268.92 Aligned_cols=269 Identities=25% Similarity=0.420 Sum_probs=225.0
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
....+.+|.+.|++++|+|++++|++|+.||.|++|++.... ....+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i 89 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSD-SNLLVSASDDKTL 89 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTT-SSEEEEEETTSEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----cchhhccCCCceEEEEEcCC-CCEEEEECCCCEE
Confidence 445678999999999999999999999999999999986432 23356789999999999997 4789999999999
Q ss_pred EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecC
Q 022716 92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
++||++++++...+.. ...+.+++|+|+++++++++.|+.+++||+++.+...... +...+..+.|++.+..+...+.
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 9999999988777664 4567789999999999999999999999999877665554 4557888999988776554432
Q ss_pred C----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee---EEEEccCC
Q 022716 170 N----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR---TISFSHTG 224 (293)
Q Consensus 170 ~----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~---~l~~sp~~ 224 (293)
+ ..+.+++++|++++|++++.|+.|++||+++++.+..+.+|..... .....+++
T Consensus 170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence 2 3467899999999999999999999999999999988888765432 23334678
Q ss_pred CEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 225 DYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.+|++|+.|+.|++||+.+++.+..+. +...|.+++|+|+++++++++.+. ++++|||+.|
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~------d~~i~~W~~d 311 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN------DKTIKLWKSD 311 (312)
T ss_dssp CEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT------TCCEEEEECC
T ss_pred cEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccC------CccEEEecCC
Confidence 999999999999999999999888775 566799999999999999998532 3678999875
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=276.06 Aligned_cols=269 Identities=24% Similarity=0.398 Sum_probs=208.5
Q ss_pred cceeecCccc-cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 12 HSREYTGHKK-KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 12 ~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
..+.+.+|.. .|.+++|+|+|++||+|+.|++|++||+..... ........+|...|.+++|+|+ +.+|++|+.|+.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~ 84 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-ICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDAT 84 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-EEEEEECSSCSSCEEEEEECTT-SSEEEEEETTSC
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-eeeeeeccccCCcEEEEEECCC-CCEEEEEECCCc
Confidence 4567789987 999999999999999999999999999864311 1112224689999999999997 478999999999
Q ss_pred EEEEeCCCCe--eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee---ee-ecccceeeeeEEecCCCE
Q 022716 91 VRLWDARSGK--CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HR-RKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 91 i~vwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~---~~-~~~~~~~~~v~~~~~~~~ 163 (293)
+++||+..+. +...+. +...+.+++|+|++++|++++.|+++++||++..... .. ..+...+..+.|+|.+..
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 9999988764 334443 3456789999999999999999999999999765432 22 224556888899887765
Q ss_pred EEEe-----------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC---------------CEEE
Q 022716 164 FFLT-----------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---------------MLCV 205 (293)
Q Consensus 164 ~~~~-----------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~---------------~~~~ 205 (293)
+... .+...+.+++|+|++++|++|+.|++|++||... ..++
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 4432 2345688999999999999999999999999621 1334
Q ss_pred EEeec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC----E----EEEE--ecCCCcceeEECCCC-CeEEEEEc
Q 022716 206 RTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR----T----VHQI--PCRAAMNSVEWNPKY-NLLAYAGD 273 (293)
Q Consensus 206 ~~~~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~----~----~~~~--~~~~~i~~~~~sp~~-~~la~~~~ 273 (293)
..+.+ |...|.+++|+|++..|++++.|+.|++|+...+. . .... .+...|++|+|+|++ .+||+||.
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~ 324 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSD 324 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEET
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCC
Confidence 45555 77899999999999999999999999999987542 1 1111 345689999999998 59999999
Q ss_pred CCCCCCCCc
Q 022716 274 DKNKYQADE 282 (293)
Q Consensus 274 d~~~~~~~~ 282 (293)
|+.+++|+.
T Consensus 325 Dg~v~~W~~ 333 (345)
T 3fm0_A 325 DGEVAFWKY 333 (345)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEEEe
Confidence 864444433
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.4e-40 Score=297.80 Aligned_cols=261 Identities=22% Similarity=0.363 Sum_probs=209.6
Q ss_pred ceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 13 SREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
...+.+|...|.+++|+|++. .|++|+.|++|++||..+. .....+.+|...|.+++|+|+ +.+|+|++.|++|
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~----~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i 214 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF----KFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTI 214 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB----EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC----eEeeeeccccCceEEEEECCC-CCEEEEEECCCcE
Confidence 456789999999999999997 5999999999999997632 233467899999999999997 4689999999999
Q ss_pred EEEeCCCCeeeeee--------eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-----------------
Q 022716 92 RLWDARSGKCSQQA--------ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR----------------- 146 (293)
Q Consensus 92 ~vwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~----------------- 146 (293)
++||+.++++...+ .+.+.+.+++|+|++++|++++.|+++++||+++.+.....
T Consensus 215 ~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (611)
T 1nr0_A 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK 294 (611)
T ss_dssp EEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECS
T ss_pred EEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcC
Confidence 99999988876655 24567889999999999999999999999999876543221
Q ss_pred ---------------------------cccceeeeeEEecCCCEEEEecC------------------------------
Q 022716 147 ---------------------------KFGYEVNEIAWNMTGEMFFLTTG------------------------------ 169 (293)
Q Consensus 147 ---------------------------~~~~~~~~v~~~~~~~~~~~~~~------------------------------ 169 (293)
.+...+..+.|+|++..++..+.
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred CEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEE
Confidence 12334666777776654332211
Q ss_pred -------------------------------------------------------------------------CCCEEEE
Q 022716 170 -------------------------------------------------------------------------NAGCYCI 176 (293)
Q Consensus 170 -------------------------------------------------------------------------~~~~~~~ 176 (293)
...+.++
T Consensus 375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v 454 (611)
T 1nr0_A 375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV 454 (611)
T ss_dssp ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence 1124678
Q ss_pred EECCCCCEEEEecCCCcEEEEeCCCCEE--EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCC-CCEEEE--Ee
Q 022716 177 AIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHT-GRTVHQ--IP 251 (293)
Q Consensus 177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~-~~~~~~--~~ 251 (293)
+|+|++++||+|+.|++|++||+..... ... .+|...|.+++|+|+|++|++++.|+.|++|+..+ ++.+.. +.
T Consensus 455 a~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~ 533 (611)
T 1nr0_A 455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWT 533 (611)
T ss_dssp EECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCC
T ss_pred EEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeee
Confidence 9999999999999999999999987643 333 67899999999999999999999999999999987 444332 23
Q ss_pred -cCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 252 -CRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 252 -~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
+...|++++|+|++++||+|+.|+.+++
T Consensus 534 ~H~~~V~~v~fspdg~~lasgs~D~~v~l 562 (611)
T 1nr0_A 534 FHTAKVACVSWSPDNVRLATGSLDNSVIV 562 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ecccceeEEEECCCCCEEEEEECCCcEEE
Confidence 6678999999999999999999864333
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.4e-39 Score=275.59 Aligned_cols=246 Identities=26% Similarity=0.418 Sum_probs=207.0
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
..|.+++|+|+|++|++|+.||+|++||+... .....+.+|...|.+++|+|++ ..|++++.|+.|++||+++++
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe
Confidence 35999999999999999999999999999742 2334578999999999999974 689999999999999999999
Q ss_pred eeeeeeecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716 101 CSQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID 179 (293)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
+...+.....+.+++++| +++++++++.|+.+++||+++.......... ......+...+.+++|+
T Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~-------------~~~~~~h~~~v~~v~~~ 265 (393)
T 1erj_A 199 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-------------NESGTGHKDSVYSVVFT 265 (393)
T ss_dssp EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------CCCSSCEEEEEEC
T ss_pred eEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc-------------ccCCCCCCCCEEEEEEC
Confidence 888777788888999999 8999999999999999999876654432110 01123456778999999
Q ss_pred CCCCEEEEecCCCcEEEEeCCCC------------EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716 180 PMGRYFAVGSADSLVSLWDISEM------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247 (293)
Q Consensus 180 ~~~~~l~~gs~d~~i~iwd~~~~------------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~ 247 (293)
|++++|++|+.|++|++||+++. .+...+.+|...|.+++|+|++++|++|+.|+.|++||..+++.+
T Consensus 266 ~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 99999999999999999998753 344567789999999999999999999999999999999999988
Q ss_pred EEEe-cCCCcceeEECC------CCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 248 HQIP-CRAAMNSVEWNP------KYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 248 ~~~~-~~~~i~~~~~sp------~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
..+. +...|.+++|+| ++++||+|+.| +++|||++++
T Consensus 346 ~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~D--------g~i~iW~~~~ 389 (393)
T 1erj_A 346 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD--------CKARIWKYKK 389 (393)
T ss_dssp EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT--------SEEEEEEEEE
T ss_pred EEECCCCCCEEEEEecCCcCcCCCCCEEEEECCC--------CcEEECcccc
Confidence 7775 566899999876 68899999988 5888998875
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-38 Score=267.15 Aligned_cols=245 Identities=20% Similarity=0.313 Sum_probs=202.7
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+.+.+|...|.+++|+|+|++|++|+.|++|++||+... .....+.+|...|.+++|+|+ ..+|++|+.|+.|+
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG----ETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTIK 132 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTT-SCEEEEEETTSCEE
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC----CeeEEEccCCCcEEEEEEcCC-CCEEEEEeCCCeEE
Confidence 4678899999999999999999999999999999999753 233457899999999999996 46899999999999
Q ss_pred EEeCCCCeeeeeeeecCceEEEEEcCC------CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 93 LWDARSGKCSQQAELSGENINITYKPD------GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
+||++.........+...+.++++.|. +..+++++.|+++++||+++.+.... +
T Consensus 133 vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--------------------~ 192 (319)
T 3frx_A 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD--------------------F 192 (319)
T ss_dssp EEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE--------------------E
T ss_pred EEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee--------------------e
Confidence 999975433333334556778888884 45899999999999999987553322 2
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
..+...+.+++++|++++|++|+.|++|++||+.+++.+..+..+ .+|.+++|+|++.+|++++.++ +++|++..+..
T Consensus 193 ~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~ 270 (319)
T 3frx_A 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYL 270 (319)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE-EEEEEETTEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCee
Confidence 345677899999999999999999999999999999988888654 6899999999999999887655 99999988766
Q ss_pred EEEEe---------cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 247 VHQIP---------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 247 ~~~~~---------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+..+. +...+.+++|+|+|++|++|+.| +.+|||++..
T Consensus 271 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D--------g~i~vWd~~t 317 (319)
T 3frx_A 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD--------NVIRVWQVMT 317 (319)
T ss_dssp EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT--------SCEEEEEEEE
T ss_pred eeccCccccccccCcCcceeEEEECCCCCEEEEeecC--------ceEEEEEEee
Confidence 65543 23457899999999999999988 5788888764
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-39 Score=269.54 Aligned_cols=268 Identities=21% Similarity=0.341 Sum_probs=201.6
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEe-eC-CcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RG-HADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-~~-h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
..+.+.+|.++|.+++|+|+ +|++|+.|++|++|++..... . ....+ .+ |...|.+++|+|+ +.+|++|+.|+
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-~-~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~ 80 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-T-LIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDS 80 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-E-EEEEECTTCCCSCEEEEEECTT-SSEEEEEETTS
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-E-EEEEEecCCccCCEEEEEECCC-CCEEEEEeCCC
Confidence 45678899999999999987 999999999999999974321 1 11223 34 9999999999997 47899999999
Q ss_pred eEEEEeCCCC-------eeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc----ceeeee-cccceeeeeE
Q 022716 90 TVRLWDARSG-------KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF----KPIHRR-KFGYEVNEIA 156 (293)
Q Consensus 90 ~i~vwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~----~~~~~~-~~~~~~~~v~ 156 (293)
.|++||+... ++...+. +...+.+++|+|++++|++++.|+++++||++.. +..... .+...+..+.
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 9999998532 2333333 3456788999999999999999999999999532 222222 3556788899
Q ss_pred EecCCCEEEEec-----------------------CCCCEEEEEECCC--CCEEEEecCCCcEEEEeCCCC--------E
Q 022716 157 WNMTGEMFFLTT-----------------------GNAGCYCIAIDPM--GRYFAVGSADSLVSLWDISEM--------L 203 (293)
Q Consensus 157 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~--~~~l~~gs~d~~i~iwd~~~~--------~ 203 (293)
|+|.+..+...+ +...+.+++|+|+ +..|++|+.|++|++||++.. .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 988776544322 3456788999998 678999999999999998643 3
Q ss_pred EEEEeec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC--EEEEE--ecCC-CcceeEECC--CCCeEEEEEcCC
Q 022716 204 CVRTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR--TVHQI--PCRA-AMNSVEWNP--KYNLLAYAGDDK 275 (293)
Q Consensus 204 ~~~~~~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~--~~~~~--~~~~-~i~~~~~sp--~~~~la~~~~d~ 275 (293)
+...+.. |..+|.+++|+|++ +|++++.|+.|++|+..+++ .+... .+.. .|++++|+| ++++||+|+.|
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D- 318 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD- 318 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT-
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC-
Confidence 4455554 88899999999765 89999999999999998774 23232 2334 799999999 68999999988
Q ss_pred CCCCCCcceEEEEeeecC
Q 022716 276 NKYQADEGVFRIYGFENA 293 (293)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~ 293 (293)
+++|||+++.|
T Consensus 319 -------g~v~~W~~~~~ 329 (330)
T 2hes_X 319 -------GIVNFWSLEKA 329 (330)
T ss_dssp -------SEEEEEEC---
T ss_pred -------CcEEEEEeccC
Confidence 68899998864
No 18
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.4e-40 Score=276.18 Aligned_cols=261 Identities=22% Similarity=0.317 Sum_probs=190.4
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEEE
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRL 93 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~v 93 (293)
.+.+|.+.|++++|+|+|++||+|+.|++|++||+.... ......+.+|...|.+++|+|. ++.+|+||+.|++|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 467999999999999999999999999999999986421 1223467899999999999753 3578999999999999
Q ss_pred EeCCCCe--eeeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEcccccee---ee-ecccceeeeeEEecCCCEE
Q 022716 94 WDARSGK--CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPI---HR-RKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 94 wd~~~~~--~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~---~~-~~~~~~~~~v~~~~~~~~~ 164 (293)
||++++. ....+. +...+.+++|+|+ +.+|++++.|+++++||++..... .. ..+...+..+.|+|....-
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence 9998874 233332 3456789999998 789999999999999999865321 11 1123345666666543210
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC---EEEEEeeccCCCeeEEEEccCC----CEEEEecCCCcEE
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM---LCVRTFTKLEWPVRTISFSHTG----DYIASASEDLFID 237 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~---~~~~~~~~~~~~v~~l~~sp~~----~~l~s~s~d~~i~ 237 (293)
.+...... ...+.+++|++|+.|++|++||++.. .++..+.+|..+|.+++|+|++ ++||+|+.|+.|+
T Consensus 166 ~~~~~~~~----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 166 SLIDHPSG----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp -----CCS----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred cccccccc----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 00000000 00112578999999999999999754 5677888999999999999987 8999999999999
Q ss_pred EEEcCCC---C-EEEE-EecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 238 ISNVHTG---R-TVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 238 iw~~~~~---~-~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
+|++.+. . .... ..+...|.+++|+|++++||+++.|+.+++|+
T Consensus 242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp EEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred EEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 9998763 1 1111 23467899999999999999999986555443
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-37 Score=262.40 Aligned_cols=269 Identities=18% Similarity=0.269 Sum_probs=211.2
Q ss_pred ceeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 13 SREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
..++.||.+.|++|+|+|+ +++|+|||.||+|++||+...... ......+.+|...|.++.|+|+ +.+|++++.|+.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~ 109 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQFALSGSWDGT 109 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-CCEEEEEccccc
Confidence 3468899999999999998 589999999999999999754322 2233457899999999999997 478999999999
Q ss_pred EEEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee--cccceeeeeEEecCCC-----
Q 022716 91 VRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGE----- 162 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~--~~~~~~~~v~~~~~~~----- 162 (293)
|++|+............ ......+.+.+++..+++++.|+.+++||++........ .+...+..+.|.+.+.
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 99999988876655443 345566788999999999999999999998765432221 1223344444443321
Q ss_pred ----------------E--EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716 163 ----------------M--FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224 (293)
Q Consensus 163 ----------------~--~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 224 (293)
. ..+..+...+.+++|+|++++|++|+.|+.|++||+++..++..+..+ ..+.+++|+|++
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~ 268 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNR 268 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSS
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCC
Confidence 1 112334567899999999999999999999999999999988877654 589999999987
Q ss_pred CEEEEecCCCcEEEEEcCCCCEEEEEe----------cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 225 DYIASASEDLFIDISNVHTGRTVHQIP----------CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~----------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.++ +++.|+.|++||+.++..+..+. +...|++++|+|++++||+|+.| +.+|||+++.
T Consensus 269 ~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D--------g~v~iW~~~t 337 (340)
T 4aow_A 269 YWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD--------NLVRVWQVTI 337 (340)
T ss_dssp SEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT--------SCEEEEEEEC
T ss_pred cee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC--------CEEEEEeCCC
Confidence 655 56679999999998877665442 34578999999999999999988 5788888763
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=263.85 Aligned_cols=267 Identities=19% Similarity=0.303 Sum_probs=225.4
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
....+.+|.+.|++++|+|++++|++|+.||.|++||+.... ....+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i 98 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE----RLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSI 98 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC----EEEEECCCSSCEEEEEECTT-SSEEEEEETTTEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch----hhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeE
Confidence 345688999999999999999999999999999999987531 23457789999999999996 5789999999999
Q ss_pred EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC-----CeEEEEEccccceeeee------------cccc--ee
Q 022716 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRR------------KFGY--EV 152 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~l~d~~~~~~~~~~------------~~~~--~~ 152 (293)
++||+.++++...+.....+.+++|+|+++.+++++.+ +.+.+||++........ .... .+
T Consensus 99 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 99 KLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred EEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 99999999988888888888999999999999999998 99999998765422111 1111 56
Q ss_pred eeeEEecCCCEEEEec----------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec
Q 022716 153 NEIAWNMTGEMFFLTT----------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 210 (293)
Q Consensus 153 ~~v~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~ 210 (293)
..+.|++.+..++... +...+.+++|+|++++|++++.|+.|++||++++..+..+.
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~- 257 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE- 257 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-
Confidence 6677777665544332 34568899999999999999999999999999998887776
Q ss_pred cCCCeeEEEEccCCCEEEEecCCC--------------cEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCC
Q 022716 211 LEWPVRTISFSHTGDYIASASEDL--------------FIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 211 ~~~~v~~l~~sp~~~~l~s~s~d~--------------~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
+..++..++|+|+++++++++.++ .+++||..+++.+..+. +...|++++|+|++++|++++.|
T Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d- 336 (369)
T 3zwl_B 258 TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED- 336 (369)
T ss_dssp CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-
T ss_pred CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC-
Confidence 778999999999999999999888 89999999999887775 56789999999999999999987
Q ss_pred CCCCCCcceEEEEeeec
Q 022716 276 NKYQADEGVFRIYGFEN 292 (293)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ 292 (293)
+.++||++++
T Consensus 337 -------g~v~iw~~~~ 346 (369)
T 3zwl_B 337 -------GFIRLHHFEK 346 (369)
T ss_dssp -------SEEEEEEECH
T ss_pred -------CeEEEEECcc
Confidence 5788888864
No 21
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.7e-38 Score=265.90 Aligned_cols=263 Identities=21% Similarity=0.292 Sum_probs=209.7
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~ 92 (293)
+.+.+|.+.|++++|+|++++|++|+.||.|++||+............+.+|...|.+++|+|. ++.+|++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4467999999999999999999999999999999997543322334457799999999999985 357999999999999
Q ss_pred EEeCCCC---------eeeeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecC
Q 022716 93 LWDARSG---------KCSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 93 vwd~~~~---------~~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
+||++++ +....+. ....+.+++|+|+ +.++++++.|+.+++||+++...............+.+.+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~- 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP- 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC-
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc-
Confidence 9999876 3333333 4566788999999 9999999999999999998877655443333332222221
Q ss_pred CCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCCEE--EEEeeccCCCeeEEEEccCC----CEEEEec
Q 022716 161 GEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEMLC--VRTFTKLEWPVRTISFSHTG----DYIASAS 231 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp~~----~~l~s~s 231 (293)
..+...+.+++++|+ +..+++++.|+.+.+|+...+.. +..+.+|..+|.+++|+|++ ++|++|+
T Consensus 164 ------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 164 ------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp ------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred ------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 124456789999997 89999999999998888776654 66778899999999999998 8999999
Q ss_pred CCCcEEEEEcCCC----------------------------------------------CEEEEEe-cCCCcceeEECCC
Q 022716 232 EDLFIDISNVHTG----------------------------------------------RTVHQIP-CRAAMNSVEWNPK 264 (293)
Q Consensus 232 ~d~~i~iw~~~~~----------------------------------------------~~~~~~~-~~~~i~~~~~sp~ 264 (293)
.|+.|++||+..+ +.+..+. +..+|++++|+|+
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317 (351)
T ss_dssp TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence 9999999999875 2333343 4568999999999
Q ss_pred CCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 265 YNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 265 ~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
+++|++++.|+ .++||+++
T Consensus 318 ~~~l~s~~~dg--------~v~iw~~~ 336 (351)
T 3f3f_A 318 GTILSSAGDDG--------KVRLWKAT 336 (351)
T ss_dssp SCCEEEEETTS--------CEEEEEEC
T ss_pred CCEEEEecCCC--------cEEEEecC
Confidence 99999999885 55666654
No 22
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.8e-38 Score=287.00 Aligned_cols=245 Identities=22% Similarity=0.280 Sum_probs=200.5
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--- 88 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d--- 88 (293)
..+.+.+|...|++++|+|+|++||+|+.||+|+|||+.... ......+.+|...|.+++|+|++ ..|++++.+
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~--~~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~ 127 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT--HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRER 127 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT--CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSC
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc--ceeeEeecccCCceEEEEECCCC-CEEEEEECCCCc
Confidence 456788999999999999999999999999999999986432 22334578999999999999975 577777765
Q ss_pred -CeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 89 -KTVRLWDARSGKCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 89 -~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
+.|++||. +.+...+. +...+.+++|+|++. .|++++.|+++++||.++.+....
T Consensus 128 ~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~-------------------- 185 (611)
T 1nr0_A 128 FGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST-------------------- 185 (611)
T ss_dssp SEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE--------------------
T ss_pred eeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeee--------------------
Confidence 47888874 44444333 345678899999987 599999999999999876543321
Q ss_pred EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-------ccCCCeeEEEEccCCCEEEEecCCCcEEE
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-------KLEWPVRTISFSHTGDYIASASEDLFIDI 238 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~sp~~~~l~s~s~d~~i~i 238 (293)
+..+...+.+++|+|++++|++|+.|++|++||+.+++++..+. +|..+|.+++|+|+|++|++++.|++|++
T Consensus 186 l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l 265 (611)
T 1nr0_A 186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 265 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 23466778999999999999999999999999999998888774 79999999999999999999999999999
Q ss_pred EEcCCCCEEEEE--------------------------------------------ecCCCcceeEECCCCCeEEEEEcC
Q 022716 239 SNVHTGRTVHQI--------------------------------------------PCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 239 w~~~~~~~~~~~--------------------------------------------~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
||+.+++.+..+ .+...|++++|+|++++|++++.|
T Consensus 266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D 345 (611)
T 1nr0_A 266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE 345 (611)
T ss_dssp EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 999987655433 244578999999999999999998
Q ss_pred CCCCCCC
Q 022716 275 KNKYQAD 281 (293)
Q Consensus 275 ~~~~~~~ 281 (293)
+.+++|+
T Consensus 346 ~~v~~Wd 352 (611)
T 1nr0_A 346 GHINSWD 352 (611)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 6555443
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.4e-38 Score=281.23 Aligned_cols=256 Identities=27% Similarity=0.397 Sum_probs=213.7
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|...|.+++|+|++++|++++.||+|++|++... ....+.+|...|.+++|+|++ ..|++++.|+.+
T Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-----~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v 368 (577)
T 2ymu_A 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-----HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTV 368 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEE
Confidence 34567899999999999999999999999999999998632 223567899999999999974 689999999999
Q ss_pred EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec--
Q 022716 92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-- 168 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-- 168 (293)
++||.. ++....+. +...+.+++|+|++++|++++.|+.+++||...........+...+..+.|+|++..+...+
T Consensus 369 ~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 369 KLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 999964 45555444 45667889999999999999999999999965433333334566788888888776554332
Q ss_pred ------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716 169 ------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 169 ------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 230 (293)
+...+.+++|+|++++|++++.|++|++||. +++++..+.+|..+|++++|+|+|++||++
T Consensus 448 ~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 526 (577)
T 2ymu_A 448 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 526 (577)
T ss_dssp SEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred CEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEE
Confidence 3456789999999999999999999999995 667788899999999999999999999999
Q ss_pred cCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCC
Q 022716 231 SEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 231 s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
+.|+.|++||. +++.+..+. +..+|.+++|+|++++|+++|.|+.
T Consensus 527 ~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~ 572 (577)
T 2ymu_A 527 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKT 572 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred ECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence 99999999995 677777665 5678999999999999999999853
No 24
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.8e-38 Score=267.60 Aligned_cols=267 Identities=14% Similarity=0.162 Sum_probs=210.5
Q ss_pred ceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
.+.+.+|...|.+++|+|++ ++|++|+.||.|++||+.... ........+|...|.+++|+|.++.+|++++.|+.|
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN--KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT--CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc--cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 45678999999999999999 999999999999999997532 222333457999999999999656789999999999
Q ss_pred EEEeCCCCeeeeeeeec---CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC-EEEEe
Q 022716 92 RLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE-MFFLT 167 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~ 167 (293)
++||+............ ..+.+++|+|+++++++++.|+.+++||++.........+...+..+.|++.++ .+...
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence 99999864433222222 457889999999999999999999999996433333334567788899998887 44432
Q ss_pred c------------------------CCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeeccC----------
Q 022716 168 T------------------------GNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLE---------- 212 (293)
Q Consensus 168 ~------------------------~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~---------- 212 (293)
+ +...+.+++|+| ++++|++++.|+.|++||++++..+..+..|.
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 303 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI 303 (383)
T ss_dssp ETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCC
T ss_pred eCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccce
Confidence 2 234578999999 99999999999999999998776555554332
Q ss_pred -------CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec---CCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 213 -------WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC---RAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 213 -------~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~---~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
..+..++|+|++++ +|+.|+.|++||+.+++.+..+.. ...+..++|+|++.+||+|+ |
T Consensus 304 ~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d-------- 372 (383)
T 3ei3_B 304 KATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G-------- 372 (383)
T ss_dssp CCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T--------
T ss_pred EEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-C--------
Confidence 34455777777777 888999999999999999888763 34566779999999999997 5
Q ss_pred ceEEEEeeec
Q 022716 283 GVFRIYGFEN 292 (293)
Q Consensus 283 ~~~~~~~~~~ 292 (293)
+.++||++++
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 5789999875
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-36 Score=255.60 Aligned_cols=264 Identities=14% Similarity=0.211 Sum_probs=221.4
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
..+|...|.+++|+|++++|++++ ||.|++|++...... ........+|...|.+++|+|+ +.+|++++.|+.|++|
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIW 124 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-SSEEEEEESSSEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEE
Confidence 458999999999999999999999 999999999754322 2222333478999999999996 4689999999999999
Q ss_pred eCCCCee--eeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCC
Q 022716 95 DARSGKC--SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 95 d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
|+.+++. ...+. ....+.+++|+|+++++++++.|+.+++||+++.+...... +...+..+.|++.+..+.....+
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 9988763 33333 33457789999999999999999999999999887766654 46678899999988766654432
Q ss_pred --------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716 171 --------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 171 --------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 230 (293)
..+.+++++|+++++++++.|+.|++||+++.+.. .+..|..+|.+++|+|++++|+++
T Consensus 205 g~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~ 283 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVST 283 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEE
T ss_pred CcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEe
Confidence 45778999999999999999999999999987654 567889999999999999999999
Q ss_pred cCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 231 SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 231 s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
+.|+.|++|++.+++.+....+..++.+++|+|++++|++++.| +.++||++
T Consensus 284 ~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iw~~ 335 (337)
T 1gxr_A 284 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD--------KKATVYEV 335 (337)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETT--------SCEEEEEE
T ss_pred cCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCC--------CeEEEEEE
Confidence 99999999999999988777888899999999999999999987 46778776
No 26
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.9e-38 Score=275.72 Aligned_cols=268 Identities=17% Similarity=0.199 Sum_probs=207.2
Q ss_pred eeecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 14 REYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
+...+|...|+||+|+| +++.||+|+.||.|+|||+.... ......+.+|.+.|++++|+|.++.+|+||+.|++|+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34567889999999999 46789999999999999997543 2233456789999999999997778999999999999
Q ss_pred EEeCCCCeeeeeeeec---CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec-
Q 022716 93 LWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT- 168 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 168 (293)
+||++.+........+ ..+.+++|+|++++|++|+.|+.|++||++.........+...+..+.|+|.++.+++.+
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEec
Confidence 9999876544333322 234578999999999999999999999998654443344567789999998876544322
Q ss_pred ------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCC------CeeEE
Q 022716 169 ------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEW------PVRTI 218 (293)
Q Consensus 169 ------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~------~v~~l 218 (293)
+...+.+++|+|++++|++|+.||+|++||+.++.....+..|.. .+...
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 124578999999999999999999999999998877766655432 23345
Q ss_pred EEccCCCEEEEec------------CCCcEEEEEcCCCCEEEEEe--cCCCccee-EECCCCCeEEEEEcCCCCCCCCcc
Q 022716 219 SFSHTGDYIASAS------------EDLFIDISNVHTGRTVHQIP--CRAAMNSV-EWNPKYNLLAYAGDDKNKYQADEG 283 (293)
Q Consensus 219 ~~sp~~~~l~s~s------------~d~~i~iw~~~~~~~~~~~~--~~~~i~~~-~~sp~~~~la~~~~d~~~~~~~~~ 283 (293)
.|+|++.++++++ .++.|++||..+++.+..+. +...|.++ +|||+|.+||+|+ | +
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d--------~ 421 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-G--------Y 421 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-S--------S
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-C--------C
Confidence 5677766666553 34679999999999887763 45678887 6999999999886 4 3
Q ss_pred eEEEEeeec
Q 022716 284 VFRIYGFEN 292 (293)
Q Consensus 284 ~~~~~~~~~ 292 (293)
.+|||+++.
T Consensus 422 ~i~iW~~~~ 430 (435)
T 4e54_B 422 HILIWSQQE 430 (435)
T ss_dssp EEEECCCC-
T ss_pred cEEEEECCc
Confidence 577887764
No 27
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-37 Score=266.74 Aligned_cols=269 Identities=14% Similarity=0.112 Sum_probs=221.2
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC--ceeEEEeeCCcCCeeEEEEcCC---CC---CEEEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPK---HA---DLIAT 84 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~--~~~~~~~~~h~~~i~~~~~~~~---~~---~~l~s 84 (293)
.+.+.+|.+.|++++|+| ++|++|+.||.|++|++...... ......+.+|...|.+++|+|+ ++ .+|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 456779999999999998 79999999999999999754310 1123456799999999999986 24 58999
Q ss_pred EeCCCeEEEEeCCCCee-----eeeeeec------CceEEEEEc----CCCCE-EEEEeCCCeEEEEEccc------cce
Q 022716 85 ASGDKTVRLWDARSGKC-----SQQAELS------GENINITYK----PDGTH-IAVGNRDDELTILDVRK------FKP 142 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~~~-----~~~~~~~------~~~~~~~~~----~~~~~-l~~~~~d~~i~l~d~~~------~~~ 142 (293)
++.|+.|++||+.+++. ...+..+ ..+.+++|+ |+++. |++++.|+.+++||++. ...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999987765 5554433 778899999 99999 99999999999999987 544
Q ss_pred ee-----eec--------ccceeeeeEEecCCCEEEEe---------------------c---C---CCCEEEEEECCCC
Q 022716 143 IH-----RRK--------FGYEVNEIAWNMTGEMFFLT---------------------T---G---NAGCYCIAIDPMG 182 (293)
Q Consensus 143 ~~-----~~~--------~~~~~~~v~~~~~~~~~~~~---------------------~---~---~~~~~~~~~~~~~ 182 (293)
+. ... ....+..+.|++.+ .+... . + ...+.+++|+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence 43 321 35567888888876 43322 2 3 5568899999999
Q ss_pred CEEEEecCC---CcEEEEeCCCCEEEEEeec-------------cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 183 RYFAVGSAD---SLVSLWDISEMLCVRTFTK-------------LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 183 ~~l~~gs~d---~~i~iwd~~~~~~~~~~~~-------------~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
++|++++.| +.|++||+++++.+..+.. |..+|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 246 ~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 246 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 999999999 9999999999998989988 999999999999999999999999999999999988
Q ss_pred EEEEe------c----------------CCCcceeEECCCC----------CeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 247 VHQIP------C----------------RAAMNSVEWNPKY----------NLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 247 ~~~~~------~----------------~~~i~~~~~sp~~----------~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+..+. . ..+|++++|+|++ ++|++++.| +.++||+++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d--------g~i~iw~~~~ 395 (397)
T 1sq9_A 326 ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD--------RSIRWFREAG 395 (397)
T ss_dssp EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT--------TEEEEEEEEC
T ss_pred eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC--------CcEEEEEcCC
Confidence 88776 3 5789999999998 799999987 5788998864
No 28
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.1e-38 Score=269.43 Aligned_cols=260 Identities=14% Similarity=0.157 Sum_probs=204.9
Q ss_pred ccEEEEEECCCCCeEEEEeCCC-------cEEEeecCCCCCCc------eeEEEeeCCcCCeeEEEEcCCCCCEEEEE--
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQ-------TARVWHIEPHGHGK------VKDIELRGHADSVDQLCWDPKHADLIATA-- 85 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg-------~v~iw~~~~~~~~~------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~-- 85 (293)
.||++++|+|||++|++||.|. .|++|+++...... .....+.+|...+.++++.+ +.+++|
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~~ 91 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILVGCN 91 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEEECC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEEEEC
Confidence 5899999999999999997643 59999997543221 12345778888899888754 355554
Q ss_pred ---------eCCCeEEEEeCCCCeee-e---eeee------cCceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceee
Q 022716 86 ---------SGDKTVRLWDARSGKCS-Q---QAEL------SGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIH 144 (293)
Q Consensus 86 ---------~~d~~i~vwd~~~~~~~-~---~~~~------~~~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~ 144 (293)
+.|+.+++|++...... . .... ...+..++|+|||+++++++ .|++|++||+++.++..
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 45788999987554311 1 1111 12356799999999987655 68999999999998888
Q ss_pred eecccceeeeeEEecCCCEEEEecCC----------------------CCEEEEEECCCCCEEEEecCCC----cEEEEe
Q 022716 145 RRKFGYEVNEIAWNMTGEMFFLTTGN----------------------AGCYCIAIDPMGRYFAVGSADS----LVSLWD 198 (293)
Q Consensus 145 ~~~~~~~~~~v~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~gs~d~----~i~iwd 198 (293)
...+..++..+.|+|++..+...+.+ ..+.+++|+|+++.+++++.|+ .+++|+
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 88888889999999998876654322 2467899999999999999887 688899
Q ss_pred CCCCEE----EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE--ecCCCcceeEECCCCCeEEEEE
Q 022716 199 ISEMLC----VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI--PCRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 199 ~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~--~~~~~i~~~~~sp~~~~la~~~ 272 (293)
+..... ...+.+|..+|.+++|+|+|++||+|+.|+.|+|||+.+++.+..+ .|..+|++|+|||++++||+||
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876543 3456788899999999999999999999999999999999988875 3567899999999999999999
Q ss_pred cCCCCCCCCcceEEEEeee
Q 022716 273 DDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 273 ~d~~~~~~~~~~~~~~~~~ 291 (293)
.|+ ++|||++.
T Consensus 332 ~D~--------tvrvw~ip 342 (365)
T 4h5i_A 332 AAN--------TIHIIKLP 342 (365)
T ss_dssp TTS--------EEEEEECC
T ss_pred CCC--------eEEEEEcC
Confidence 985 66777663
No 29
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=262.90 Aligned_cols=249 Identities=21% Similarity=0.322 Sum_probs=200.0
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCe
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKT 90 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~ 90 (293)
..+.+.+|.+.|.+++|+|++++|++|+.||.|++|++.... ......+.+|...|.+++|++. ++.+|++++.|+.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 345688999999999999999999999999999999996321 2233457789999999999865 2578999999999
Q ss_pred EEEEeCCCCe--eeeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 91 VRLWDARSGK--CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 91 i~vwd~~~~~--~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
|++||+.+++ ...... ....+.+++|+|+ +.++++++.|+.+++||++....... ..
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~------------------~~ 142 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------------------II 142 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE------------------EE
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee------------------EE
Confidence 9999999886 333333 4566789999999 99999999999999999987532211 12
Q ss_pred EecCCCCEEEEEECC-------------CCCEEEEecCCCcEEEEeCCCC----EEEEEeeccCCCeeEEEEccC---CC
Q 022716 166 LTTGNAGCYCIAIDP-------------MGRYFAVGSADSLVSLWDISEM----LCVRTFTKLEWPVRTISFSHT---GD 225 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~-------------~~~~l~~gs~d~~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~---~~ 225 (293)
+..+...+.+++++| ++.++++|+.|+.|++||++.. .....+.+|..+|.+++|+|+ ++
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC
Confidence 234556677888888 6999999999999999998754 345677889999999999999 89
Q ss_pred EEEEecCCCcEEEEEcCCCCE---EEEE---ecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716 226 YIASASEDLFIDISNVHTGRT---VHQI---PCRAAMNSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~~~~---~~~~---~~~~~i~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
+|++++.|+.|++||+.++.. .... .+...|.+++|+|++++|++++.|+.+++|
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw 283 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEE
T ss_pred eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 999999999999999988742 2222 245679999999999999999988544433
No 30
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3e-37 Score=284.14 Aligned_cols=251 Identities=18% Similarity=0.287 Sum_probs=209.7
Q ss_pred eeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCC-ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+|.+.|++++|+|++ ++|+|||.||+|++|++...... ......+.+|...|.+++|+|+ +.+|+||+.|+.|
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGEL 454 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEEEeCCCcE
Confidence 4578999999999999875 78999999999999999753321 2233467899999999999997 4789999999999
Q ss_pred EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
++||+.++.+...+. +...+.+++|+|+++++++++.|++|++||+........... ...+.
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-----------------~~~h~ 517 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG-----------------GEGHR 517 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-----------------TTSCS
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC-----------------CCCCC
Confidence 999999998877665 456678999999999999999999999999764322111000 01244
Q ss_pred CCEEEEEECCCC--CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE
Q 022716 171 AGCYCIAIDPMG--RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH 248 (293)
Q Consensus 171 ~~~~~~~~~~~~--~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~ 248 (293)
..+.+++|+|++ ..+++|+.|++|++||++++.....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+.
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 568899999986 689999999999999999998889999999999999999999999999999999999999999888
Q ss_pred EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 249 QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 249 ~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.+.....|.+++|+|++.++++++++ .+|||+++
T Consensus 598 ~~~~~~~v~~~~~sp~~~~l~~~~~~---------~i~iwd~~ 631 (694)
T 3dm0_A 598 SLEANSVIHALCFSPNRYWLCAATEH---------GIKIWDLE 631 (694)
T ss_dssp CCBCSSCEEEEEECSSSSEEEEEETT---------EEEEEETT
T ss_pred EecCCCcEEEEEEcCCCcEEEEEcCC---------CEEEEECC
Confidence 88778889999999999888877643 36666654
No 31
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=263.04 Aligned_cols=253 Identities=15% Similarity=0.203 Sum_probs=196.8
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCC-------CCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-------HGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~-------~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
....|...|.+++|+|||++|++++ |+++|+||... .............|...|.+++|+|+ ..|++|+.
T Consensus 25 ~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~l~~~s~ 101 (344)
T 4gqb_B 25 APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE--RGILVASD 101 (344)
T ss_dssp SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT--TEEEEEET
T ss_pred CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC--CeEEEEEC
Confidence 3446788999999999999998887 78888887320 00000011122346678999999986 46889999
Q ss_pred CCeEEEEeCCCCeeeeee-----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCC
Q 022716 88 DKTVRLWDARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
||+|++||+.++++.... .+...+.+++|+|+|++|++|+.|++|++||+++.+++..
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~----------------- 164 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS----------------- 164 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-----------------
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE-----------------
Confidence 999999999988754432 2345688999999999999999999999999988665443
Q ss_pred EEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEee--ccCCCeeEEEEccC-CCEEEEecCCCcEEE
Q 022716 163 MFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTISFSHT-GDYIASASEDLFIDI 238 (293)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~-~~~l~s~s~d~~i~i 238 (293)
+..+...+.+++|+|++ .++++|+.|++|++||+++++....+. .+...+.+++|+|+ +++|++|+.|+.|++
T Consensus 165 ---~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~ 241 (344)
T 4gqb_B 165 ---YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL 241 (344)
T ss_dssp ---ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ---EcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence 23456778899999988 578999999999999999887777664 34567999999995 568899999999999
Q ss_pred EEcCCCCEEEEEe-cCCCcceeEECCCC-CeEEEEEcCCCCCCCCcceEEEEee
Q 022716 239 SNVHTGRTVHQIP-CRAAMNSVEWNPKY-NLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 239 w~~~~~~~~~~~~-~~~~i~~~~~sp~~-~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
||+.+++.+..+. +...|++++|+|++ ++||+|+.|+.+++||...-+++.+
T Consensus 242 wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~ 295 (344)
T 4gqb_B 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS 295 (344)
T ss_dssp EESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE
Confidence 9999998887775 56689999999998 6899999998877777655555443
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3e-36 Score=271.36 Aligned_cols=262 Identities=26% Similarity=0.392 Sum_probs=217.1
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|...|.+++|+|+++.|++++.|+.|++|+... . ....+.+|...|.+++++|+ ...|++++.|+.|
T Consensus 254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~----~-~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~d~~i 327 (577)
T 2ymu_A 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG----Q-LLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTV 327 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS----C-EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC----c-EEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeE
Confidence 3456789999999999999999999999999999999753 1 22356799999999999997 4689999999999
Q ss_pred EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec---
Q 022716 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT--- 168 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--- 168 (293)
++||...............+.+++|+|+++.+++++.|+.+++||...........+...+..+.|+|++..+...+
T Consensus 328 ~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 328 KLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp EEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 99998765544333445667889999999999999999999999965433333334566788888888776554332
Q ss_pred -----------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec
Q 022716 169 -----------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231 (293)
Q Consensus 169 -----------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 231 (293)
+...+.+++|+|++++|++++.|++|++||. +++.+..+.+|..+|.+++|+|++++|++++
T Consensus 408 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 408 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp EEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred EEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 3456789999999999999999999999996 4566778899999999999999999999999
Q ss_pred CCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 232 EDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 232 ~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.|+.|++||. +++.+..+. +..+|++++|+|++++||+++.|+.+++|+
T Consensus 487 ~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 487 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999999995 677777665 466899999999999999999997665554
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=268.90 Aligned_cols=267 Identities=13% Similarity=0.200 Sum_probs=217.8
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
.+|...|.+++|+|++++|++|+.||.|++|++............+.+|...|.+++|+|++..+|++++.|+.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 46889999999999999999999999999999975322222445677899999999999986679999999999999999
Q ss_pred CCCe------eeeee----eecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecc-------cceeeeeEEe
Q 022716 97 RSGK------CSQQA----ELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKF-------GYEVNEIAWN 158 (293)
Q Consensus 97 ~~~~------~~~~~----~~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~-------~~~~~~v~~~ 158 (293)
.+++ ..... .+...+.+++|+|+ +..+++++.|+.+++||+++.+....... ...+..+.|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 8876 32222 24456789999999 78999999999999999998877766554 4668889999
Q ss_pred cCCC-EEEEec--------------------------CCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeec
Q 022716 159 MTGE-MFFLTT--------------------------GNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTK 210 (293)
Q Consensus 159 ~~~~-~~~~~~--------------------------~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~ 210 (293)
|.+. .+.... +...+.+++|+| ++++|++++.|+.|++||+++++.+..+..
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 8763 333222 224578999999 899999999999999999999999999999
Q ss_pred cCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEE---------------Ee---------------------cC
Q 022716 211 LEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQ---------------IP---------------------CR 253 (293)
Q Consensus 211 ~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~---------------~~---------------------~~ 253 (293)
|..+|.+++|+|++ .+|++++.|+.|++|++.++..... +. +.
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 99999999999999 8999999999999999987642110 00 34
Q ss_pred CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 254 AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 254 ~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.++.+++|+|+|++||+++.|+ .++||+++
T Consensus 384 ~~~~~~~~s~dg~~la~~~~d~--------~v~~w~~~ 413 (416)
T 2pm9_A 384 EPSPAAHWAFGGKLVQITPDGK--------GVSITNPK 413 (416)
T ss_dssp CCSCCCEEETTTEEECBCTTSS--------CBCCBCCC
T ss_pred CCccceEEeeCCeEEEEeCCCC--------eEEEEEec
Confidence 5677999999999999999875 45566554
No 34
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=256.75 Aligned_cols=262 Identities=20% Similarity=0.266 Sum_probs=209.5
Q ss_pred cceeecCccccEEEEEECCC---CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 12 HSREYTGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
..+.+.+|.+.|.+++|+|+ |++|++|+.||.|++||+.... ......+.+|...|.+++|+|+ +.+|++++.|
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d 107 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCD 107 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS--CEEEEEEEECSSCEEEEEECTT-SSEEEEEETT
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC--ceeEEEeccccCCEEEEEECcC-CCEEEEEcCC
Confidence 34567899999999999999 6999999999999999997522 2233457789999999999996 5689999999
Q ss_pred CeEEEEeCCCCeeeeeeeecCceEEEEE--cCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 89 KTVRLWDARSGKCSQQAELSGENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
+.|++||+.+++......+...+.+++| +|+++++++++.|+.+++||+++.++.........+..+.+... .+++
T Consensus 108 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 185 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP--MAVV 185 (368)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT--EEEE
T ss_pred CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC--eeEE
Confidence 9999999999988877777788889999 89999999999999999999998887766655444444333321 1111
Q ss_pred ec-----------------------CCCCEEEEEECCCCCE----EEEecCCCcEEEEeCCCC---EEEEEeeccCC---
Q 022716 167 TT-----------------------GNAGCYCIAIDPMGRY----FAVGSADSLVSLWDISEM---LCVRTFTKLEW--- 213 (293)
Q Consensus 167 ~~-----------------------~~~~~~~~~~~~~~~~----l~~gs~d~~i~iwd~~~~---~~~~~~~~~~~--- 213 (293)
.. ......++++.++... +++++.|+.|++||++.. ..+..+..|..
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence 11 1123344555444433 999999999999999876 34556666654
Q ss_pred ---------CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCC
Q 022716 214 ---------PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKY 278 (293)
Q Consensus 214 ---------~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~ 278 (293)
+|.+++|+|++++|++|+.|+.|++||+.+++.+..+. +..+|.+++|+|++.+||+++.|+...
T Consensus 266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~ 340 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSK 340 (368)
T ss_dssp --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTT
T ss_pred cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccc
Confidence 79999999999999999999999999999998888775 466899999999999999999886444
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.3e-36 Score=259.39 Aligned_cols=239 Identities=22% Similarity=0.355 Sum_probs=192.2
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC------------------cCCeeEEEEcCCC
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH------------------ADSVDQLCWDPKH 78 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h------------------~~~i~~~~~~~~~ 78 (293)
.+|.+.|.+++|+|+|++||+|+ |+++++|++.... . ...+..| ...|.+++|+|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~--~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d- 134 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS--L--VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD- 134 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC--E--EEEECC-----------------CCCCBEEEEEECTT-
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC--E--EEEecCccccccccccccccccCCCceeEEEEEECCC-
Confidence 36999999999999999999976 7899999987532 1 1122222 234899999997
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
+.+|++|+.|+.|++||+.+++....+. +...+.+++|+|++++|++++.|+++++||+++.+.....
T Consensus 135 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----------- 203 (393)
T 1erj_A 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----------- 203 (393)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------
Confidence 4689999999999999999988777665 4456788999999999999999999999999876543322
Q ss_pred ecCCCEEEEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEe-------eccCCCeeEEEEccCCCEEEE
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTF-------TKLEWPVRTISFSHTGDYIAS 229 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~~~~l~s 229 (293)
.....+.+++++| +++++++|+.|+.|++||++++..+..+ .+|...|.+++|+|+|++|++
T Consensus 204 ----------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s 273 (393)
T 1erj_A 204 ----------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 273 (393)
T ss_dssp ----------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred ----------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE
Confidence 1234567889998 8999999999999999999988777665 568889999999999999999
Q ss_pred ecCCCcEEEEEcCCCC------------EEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 230 ASEDLFIDISNVHTGR------------TVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 230 ~s~d~~i~iw~~~~~~------------~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
|+.|+.|++||+.+.. ....+ .+...|.+++|+|++.+|++|+.|+.+++|+.
T Consensus 274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999997642 22233 35567999999999999999999976655543
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.3e-36 Score=254.28 Aligned_cols=267 Identities=12% Similarity=0.179 Sum_probs=215.4
Q ss_pred eecCccccEEEEEECCC----CCeEEEEeCCCcEEEeecCCCCCCc-eeEEEeeCCcCCeeEEEEcCCC---CCEEEEEe
Q 022716 15 EYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKH---ADLIATAS 86 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~h~~~i~~~~~~~~~---~~~l~s~~ 86 (293)
...+|.++|.+++|+|+ ...+++++.++.|++|++....... ........|...|.+++|+|+. +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 4567777778899999997432111 1111122367889999999874 24899999
Q ss_pred CCCeEEEEeCCCCeeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeee----cccceeeeeEEecC
Q 022716 87 GDKTVRLWDARSGKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRR----KFGYEVNEIAWNMT 160 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~----~~~~~~~~v~~~~~ 160 (293)
.|+.|++||+.+++....+. +...+.+++|+| ++..+++++.|+.|++||+++.+..... .+...+..+.|++.
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 99999999999988877776 556788999999 8999999999999999999988777665 46678999999998
Q ss_pred CCEEEEecCC-------------------------------------------------CCEEEEEECCCCCEEEEecCC
Q 022716 161 GEMFFLTTGN-------------------------------------------------AGCYCIAIDPMGRYFAVGSAD 191 (293)
Q Consensus 161 ~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~l~~gs~d 191 (293)
+..++....+ ..+.+++++ ++++++++.|
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 8776654432 335566666 7899999999
Q ss_pred CcEEEEeCCCC--------------EEEEEeeccCCCeeEEEEccC--CCEEEEecCCCcEEEEEcCCCC----EEEEEe
Q 022716 192 SLVSLWDISEM--------------LCVRTFTKLEWPVRTISFSHT--GDYIASASEDLFIDISNVHTGR----TVHQIP 251 (293)
Q Consensus 192 ~~i~iwd~~~~--------------~~~~~~~~~~~~v~~l~~sp~--~~~l~s~s~d~~i~iw~~~~~~----~~~~~~ 251 (293)
+.|++||+.++ ..+..+..|..+|.+++|+|+ +++|++|+.|+.|++||+.+++ ....+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 99999998765 347778889999999999999 9999999999999999999875 334554
Q ss_pred c---CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 252 C---RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 252 ~---~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
. ..+|++++|+|++++|++++.| +.++||++.
T Consensus 331 ~~~~~~~v~~~~~s~~~~~l~s~~~d--------g~i~iwd~~ 365 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRDSSILIAVCDD--------ASIWRWDRL 365 (366)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETT--------SEEEEEEC-
T ss_pred ccccCCceEEEEeCCCCCeEEEEeCC--------CEEEEEEec
Confidence 4 4789999999999999999987 578888875
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=245.91 Aligned_cols=261 Identities=19% Similarity=0.216 Sum_probs=209.4
Q ss_pred ccceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
...+.+.+|.+.|.+++| |++++|++|+.||.|++||+... .....+..|...|.+++|+|+ +.+|++++.|+.
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 82 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ----WLGTVVYTGQGFLNSVCYDSE-KELLLFGGKDTM 82 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS----EEEEEEEECSSCEEEEEEETT-TTEEEEEETTSC
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC----EEEEEeecCCccEEEEEECCC-CCEEEEecCCCe
Confidence 355778999999999999 99999999999999999999642 233456688999999999996 578999999999
Q ss_pred EEEEeCCCCe---eeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee-ecccceeeeeEEec-CCCEE
Q 022716 91 VRLWDARSGK---CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNM-TGEMF 164 (293)
Q Consensus 91 i~vwd~~~~~---~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~-~~~~~~~~~v~~~~-~~~~~ 164 (293)
+++|++.... ....+. +...+.++.| +++.+++++.|+.+++||. ...... ..+...+..+.|.+ .+..+
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--CcEEEecccCCCceeEEEEccCCCCEE
Confidence 9999986542 233333 3455667777 5789999999999999992 233322 23455677777776 44444
Q ss_pred EEec--------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716 165 FLTT--------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224 (293)
Q Consensus 165 ~~~~--------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 224 (293)
.... +...+.+++++|++. +++++.|+.|++||+++++.+..+..|..+|.+++|+|++
T Consensus 159 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 237 (313)
T 3odt_A 159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG 237 (313)
T ss_dssp EEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence 4332 345688999999998 9999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 225 DYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.|++++.|+.|++||+.+++.+..+.. ..+|.+++|+|++. +++++.| +.++||++++
T Consensus 238 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d--------g~i~iw~~~~ 296 (313)
T 3odt_A 238 -DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSD--------NLVRIFSQEK 296 (313)
T ss_dssp -CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETT--------SCEEEEESCG
T ss_pred -CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCC--------CcEEEEeCCC
Confidence 699999999999999999998887764 44899999999998 5567777 4667777653
No 38
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=258.03 Aligned_cols=270 Identities=12% Similarity=0.163 Sum_probs=207.3
Q ss_pred cceeecCccccEEEEEECCCCCeE-EEEeC---CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC--CCEEEEE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKL-ASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH--ADLIATA 85 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~---dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~~l~s~ 85 (293)
..+.+.+|...|.+++|+|+++.+ ++|+. ||.|++||+... ........+|...|.+++|+|+. +.+|+++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG---DLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS---SEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC---cccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 345567899999999999999765 56665 999999999753 22333344789999999999974 5789999
Q ss_pred eCCCeEEEEeCCCCe-eeeeee-ecCceEEEE------EcCCCCEEEEEeCCCeEEEEEccccc-eeeeecc-----cce
Q 022716 86 SGDKTVRLWDARSGK-CSQQAE-LSGENINIT------YKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKF-----GYE 151 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~-~~~~~~-~~~~~~~~~------~~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~-----~~~ 151 (293)
+.|+.|++||+.+++ ....+. +...+.++. |+|+++.|++++.|+.+++||+++.. +...... ...
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 999999999998876 555554 345566774 56899999999999999999998765 4443321 224
Q ss_pred eeeeE----EecCCCEEEEec--------------------CCCCEEEEEECC---CCCEEEEecCCCcEEEEeCCCCEE
Q 022716 152 VNEIA----WNMTGEMFFLTT--------------------GNAGCYCIAIDP---MGRYFAVGSADSLVSLWDISEMLC 204 (293)
Q Consensus 152 ~~~v~----~~~~~~~~~~~~--------------------~~~~~~~~~~~~---~~~~l~~gs~d~~i~iwd~~~~~~ 204 (293)
+..+. |++.+..+.... +...+.+++++| ++.++++|+.||.|++||++++..
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence 55665 455555544333 345688999999 999999999999999999876543
Q ss_pred EEE-----eeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCC-------------------EEEEEe-cCCCcce
Q 022716 205 VRT-----FTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGR-------------------TVHQIP-CRAAMNS 258 (293)
Q Consensus 205 ~~~-----~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~-------------------~~~~~~-~~~~i~~ 258 (293)
... +.+|..+|.+++|+|+++ +|++|+.|+.|++||+.++. .+..+. +..+|.+
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 333 348999999999999998 89999999999999997643 333443 5668999
Q ss_pred eEECCCCCeEE-EEEcCCCCCCCCcceEEEEeeec
Q 022716 259 VEWNPKYNLLA-YAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 259 ~~~sp~~~~la-~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
++|+|++++|+ +++.| +.++||++++
T Consensus 327 ~~~s~~~~~l~~s~~~d--------~~i~iw~~~~ 353 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFD--------QTVRVLIVTK 353 (357)
T ss_dssp EEECSSSTTEEEEEETT--------SEEEEEEECC
T ss_pred EEEcCCCCeEEEEecCC--------CcEEEEECCC
Confidence 99999999998 78877 5788888865
No 39
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=254.12 Aligned_cols=252 Identities=18% Similarity=0.266 Sum_probs=204.7
Q ss_pred cceeecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEE---------eeCCcCCeeEEEEcCCCCCE
Q 022716 12 HSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIE---------LRGHADSVDQLCWDPKHADL 81 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~---------~~~h~~~i~~~~~~~~~~~~ 81 (293)
..+.+.+|.+.|.+++|+| ++++|++|+.||.|++||+............ ..+|...|.+++|+|.+..+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3456778999999999999 9999999999999999999864322211110 02599999999999966778
Q ss_pred EEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCC---CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716 82 IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 82 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~ 158 (293)
|++++.|+.|++||+.+++....+.....+.++.+.|. +..+++++.|+.+.+||+++......
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~------------- 181 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI------------- 181 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE-------------
T ss_pred EEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee-------------
Confidence 99999999999999999998888888888888999874 45999999999999999987654432
Q ss_pred cCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCE-EEEEe---------------eccCCCeeEEEEc
Q 022716 159 MTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML-CVRTF---------------TKLEWPVRTISFS 221 (293)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~s 221 (293)
+..+...+.+++++|+++ .+++|+.||.|++||+++.. .+..+ ..|..+|.+++|+
T Consensus 182 -------~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 182 -------LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp -------ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred -------ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 234566788999999998 58999999999999997653 23333 4678899999999
Q ss_pred cCCCEEEEecCCCcEEEEEcCCCC-----------------------------------------------EEEEEe-cC
Q 022716 222 HTGDYIASASEDLFIDISNVHTGR-----------------------------------------------TVHQIP-CR 253 (293)
Q Consensus 222 p~~~~l~s~s~d~~i~iw~~~~~~-----------------------------------------------~~~~~~-~~ 253 (293)
|++++|++++.|+.|++||+.+++ .+..+. +.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 999999999999999999987643 233333 45
Q ss_pred CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 254 AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 254 ~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.+|.+++|+|++++|++++.|+ .++||+++
T Consensus 335 ~~v~~~~~s~~~~~l~s~~~dg--------~i~iw~~~ 364 (408)
T 4a11_B 335 KTVDCCVFQSNFQELYSGSRDC--------NILAWVPS 364 (408)
T ss_dssp SCEEEEEEETTTTEEEEEETTS--------CEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEECCCC--------eEEEEeCC
Confidence 6899999999999999999885 56666654
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-36 Score=257.63 Aligned_cols=257 Identities=14% Similarity=0.205 Sum_probs=216.8
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
|.+.|++++|+|++++|++|+.||.|++|+... . ....+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~----~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG----A-LLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTS----C-EEEEECCCCSCEEEEEECTT-SSEEEEEETTCCEEEEETTT
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC----C-eeeeccCCCccEEEEEECCC-CCEEEEEecCCeEEEEECCC
Confidence 688999999999999999999999999999432 1 23457789999999999997 46889999999999999999
Q ss_pred CeeeeeeeecCc----------------eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCC
Q 022716 99 GKCSQQAELSGE----------------NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG 161 (293)
Q Consensus 99 ~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~ 161 (293)
++....+..+.. +.++.|.|++ .+++++.++.+.+||+++..+..... +...+..+.|++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 887776554433 5678888875 58899999999999999877665543 45678899999988
Q ss_pred CEEEEecC---------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716 162 EMFFLTTG---------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF 220 (293)
Q Consensus 162 ~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 220 (293)
..++.... ...+.+++++|++ .+++++.|+.|++||++++..+..+..|..+|.+++|
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 338 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI 338 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEE
Confidence 76664442 3457899999999 9999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCC--------------------EEEEEecC--C-CcceeEECCCCCeEEEEEcCCCC
Q 022716 221 SHTGDYIASASEDLFIDISNVHTGR--------------------TVHQIPCR--A-AMNSVEWNPKYNLLAYAGDDKNK 277 (293)
Q Consensus 221 sp~~~~l~s~s~d~~i~iw~~~~~~--------------------~~~~~~~~--~-~i~~~~~sp~~~~la~~~~d~~~ 277 (293)
+|++++|++++.|+.|++|++.+++ .+..+..+ . .|.+++|+|++++|++++.|
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 415 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL--- 415 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS---
T ss_pred cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC---
Confidence 9999999999999999999998877 66766544 4 89999999999999999987
Q ss_pred CCCCcceEEEEeee
Q 022716 278 YQADEGVFRIYGFE 291 (293)
Q Consensus 278 ~~~~~~~~~~~~~~ 291 (293)
+.++||+++
T Consensus 416 -----g~i~iw~~~ 424 (425)
T 1r5m_A 416 -----QEGSVVAIP 424 (425)
T ss_dssp -----SCCEEEECC
T ss_pred -----ceEEEEeec
Confidence 467788775
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-35 Score=273.06 Aligned_cols=245 Identities=22% Similarity=0.363 Sum_probs=199.5
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+.+.+|...|.+++|+|+|++|+||+.||+|++||+... .....+.+|...|.+++|+|++ ..|+||+.|++|+
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~----~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG----VSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIK 497 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEE
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC----cceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEE
Confidence 3567899999999999999999999999999999999742 2334678999999999999974 6789999999999
Q ss_pred EEeCCCCeeeeee----eecCceEEEEEcCCC--CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 93 LWDARSGKCSQQA----ELSGENINITYKPDG--THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 93 vwd~~~~~~~~~~----~~~~~~~~~~~~~~~--~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
+||.......... .+...+.+++|+|++ ..+++++.|++|++||+++.+.... +
T Consensus 498 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~--------------------~ 557 (694)
T 3dm0_A 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST--------------------L 557 (694)
T ss_dssp EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE--------------------E
T ss_pred EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE--------------------E
Confidence 9998655332221 123457789999987 5799999999999999987554322 2
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
..+...+.+++++|++++|++|+.|++|++||+++++++..+.. ...|.+++|+|++.+|++++. +.|++||+.+++.
T Consensus 558 ~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 558 AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSI 635 (694)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEE
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCC
Confidence 34567789999999999999999999999999999988877654 468999999999998887765 5599999999887
Q ss_pred EEEEecC--------------------CCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 247 VHQIPCR--------------------AAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 247 ~~~~~~~--------------------~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+..+... ..+++++|||++++|++|+.| +++|||++..
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D--------g~i~iW~i~~ 693 (694)
T 3dm0_A 636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD--------GVIRVWGIGR 693 (694)
T ss_dssp EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT--------SEEEEEEC--
T ss_pred hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC--------CeEEEEeccC
Confidence 7655321 125789999999999999988 5888998764
No 42
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-35 Score=253.25 Aligned_cols=245 Identities=16% Similarity=0.192 Sum_probs=202.7
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
.+..|..+|.+++|+|++++|++|+.||.|++||+.... ......+.+|...|.+++|+|+ +.+|++++.|+.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEE
Confidence 355699999999999999999999999999999987431 1133457789999999999996 5789999999999999
Q ss_pred eCCCCeeeeee---eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 95 DARSGKCSQQA---ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 95 d~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
|+.+++..... .+...+.+++|+|+++++++++.|+.+++||++......... .....+..
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~----------------~~~~~~~~ 143 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK----------------HIKKPIRS 143 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE----------------EECTTCCS
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee----------------eeecccCC
Confidence 99888754443 245667899999999999999999999999988754211100 01123456
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeC------------------CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDI------------------SEMLCVRTFTKLEWPVRTISFSHTGDYIASASED 233 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~------------------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d 233 (293)
.+.+++|+|+++++++|+.|+.|++||+ ..+..+..+..|..+|.+++|+|++++|++++.|
T Consensus 144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 7889999999999999999999999995 3677888888999999999999999999999999
Q ss_pred CcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 234 LFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 234 ~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
+.|++||+.+++.+..+.. ..+|.+++|+|++.+|+++ .|+.+++
T Consensus 224 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i 269 (372)
T 1k8k_C 224 STVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVL 269 (372)
T ss_dssp TEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEE
T ss_pred CEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEE
Confidence 9999999999998887764 4589999999999988877 6654433
No 43
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-35 Score=248.15 Aligned_cols=226 Identities=21% Similarity=0.318 Sum_probs=195.1
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
...+..|...|.+++|+|++++|++|+.|+.|++|++............+.+|...|.++.|+++ ..+++++.|+.|+
T Consensus 90 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~s~d~~i~ 167 (340)
T 1got_B 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCA 167 (340)
T ss_dssp EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET--TEEEEEETTSCEE
T ss_pred ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC--CcEEEEECCCcEE
Confidence 45567899999999999999999999999999999997543222334567899999999999875 3588999999999
Q ss_pred EEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecCC
Q 022716 93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 93 vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
+||+.++++...+. +.+.+.+++|+|+++++++|+.|+++++||+++........ +...+..+.|+|.+..+...+.+
T Consensus 168 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 99999998877665 45568899999999999999999999999999887666543 55678999999988766544322
Q ss_pred -----------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE
Q 022716 171 -----------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 227 (293)
Q Consensus 171 -----------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 227 (293)
..+.+++|+|++++|++|+.|+.|++||+.++..+..+.+|..+|.+++|+|+|++|
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 327 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEE
Confidence 247889999999999999999999999999999899999999999999999999999
Q ss_pred EEecCCCcEEEEE
Q 022716 228 ASASEDLFIDISN 240 (293)
Q Consensus 228 ~s~s~d~~i~iw~ 240 (293)
++|+.|+.|+|||
T Consensus 328 ~s~s~D~~i~iWd 340 (340)
T 1got_B 328 ATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEcCCccEEecC
Confidence 9999999999996
No 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=264.90 Aligned_cols=246 Identities=13% Similarity=0.203 Sum_probs=193.0
Q ss_pred cceee-cCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCC---CCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 12 HSREY-TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEP---HGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 12 ~~~~~-~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~---~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
....+ .+|.+.|++++|+| ++++|++|+.||+|++||+.. ..... ....+ +|...|.+++|+|+ +.+|++++
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~-~h~~~v~~~~~~~~-~~~l~s~s 130 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-SSLTY-DCSSTVTQITMIPN-FDAFAVSS 130 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-CSEEE-ECSSCEEEEEECTT-SSEEEEEE
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-eeeec-cCCCCEEEEEEeCC-CCEEEEEe
Confidence 34556 88999999999999 999999999999999999864 21111 11222 58999999999986 57899999
Q ss_pred CCCeEEEEeCC---CCeeeeeee-------------ecCceEEEE--EcCCCCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716 87 GDKTVRLWDAR---SGKCSQQAE-------------LSGENINIT--YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148 (293)
Q Consensus 87 ~d~~i~vwd~~---~~~~~~~~~-------------~~~~~~~~~--~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~ 148 (293)
.|+.|++||+. .++...... ....+.++. ++|++..+++++.|+.|++||+++.++......
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 99999999984 444333221 122344454 568899999999999999999988665443221
Q ss_pred cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEc----cC
Q 022716 149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFS----HT 223 (293)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s----p~ 223 (293)
..+...+.+++|+|++++|++|+.||.|++||++++.++.++. .|..+|.+++|+ |+
T Consensus 211 ------------------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 211 ------------------SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp ------------------CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred ------------------CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence 0134578899999999999999999999999999999988876 777899999555 56
Q ss_pred CCEEEEecCCCcEEEEEcCCCCEEEEEe---------------------------cCCCcceeEECCCCCeEEEEEcCCC
Q 022716 224 GDYIASASEDLFIDISNVHTGRTVHQIP---------------------------CRAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~---------------------------~~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
+++|++|+.|+.|++||+.+++.+..+. +...|.+++|+ ++++|++|+.|+.
T Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~ 351 (437)
T 3gre_A 273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS 351 (437)
T ss_dssp EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence 8899999999999999999998777665 23357888998 6789999998854
Q ss_pred CCC
Q 022716 277 KYQ 279 (293)
Q Consensus 277 ~~~ 279 (293)
+++
T Consensus 352 i~~ 354 (437)
T 3gre_A 352 IVM 354 (437)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 45
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=254.68 Aligned_cols=259 Identities=15% Similarity=0.184 Sum_probs=207.2
Q ss_pred CccccEEEEEECCCCC-eEEEEeCCCcEEEeec----CCCCCC--ceeEEEeeC----------CcCCeeEEEEcCCCCC
Q 022716 18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHI----EPHGHG--KVKDIELRG----------HADSVDQLCWDPKHAD 80 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~----~~~~~~--~~~~~~~~~----------h~~~i~~~~~~~~~~~ 80 (293)
.|.++|.+++|+|+|+ +|++|+.||.|++|++ ...... ......+.. |...|.+++|+|+ +.
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~ 121 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-GN 121 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-SS
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC-CC
Confidence 4558999999999999 9999999999999999 543200 001112222 6789999999996 57
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccce--------
Q 022716 81 LIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE-------- 151 (293)
Q Consensus 81 ~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~-------- 151 (293)
+|++++.|+.|++|| .+++....+. +...+.+++|+|+++++++++.|+.+++||+++............
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 899999999999999 4555555554 456788999999999999999999999999988776665543222
Q ss_pred --------eeeeEEecCCCEEE--------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE
Q 022716 152 --------VNEIAWNMTGEMFF--------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 203 (293)
Q Consensus 152 --------~~~v~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~ 203 (293)
+..+.|.+.+..+. +..+...+.+++++|++++|++++.|+.|++||+++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN 280 (425)
T ss_dssp -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 66777776644322 22345678999999999999999999999999999888
Q ss_pred EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 204 CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 204 ~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
.+..+..|..+|.+++|+|++ ++++++.|+.|++||+.+++.+..+.. ..++.+++|+|++++|++++.|+.+++
T Consensus 281 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 281 SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 888888899999999999999 999999999999999999988877654 668999999999999999998854433
No 46
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.6e-35 Score=245.06 Aligned_cols=222 Identities=23% Similarity=0.355 Sum_probs=194.2
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
.+.||...|.+++|++++..+++|+.|++|++||+... .....+..|...+.+++|+|++ .+|++++.|+.|++|
T Consensus 75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~----~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG----KQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIF 149 (321)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEE
T ss_pred eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC----CEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEE
Confidence 47899999999999999999999999999999999753 2233466788889999999974 689999999999999
Q ss_pred eCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEecC---
Q 022716 95 DARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG--- 169 (293)
Q Consensus 95 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~--- 169 (293)
|+++++....+..+ ..+.+++|+|++++|++++.|+.|++||+++.+.+.... +...+..+.|+|++..+...+.
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~ 229 (321)
T 3ow8_A 150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229 (321)
T ss_dssp ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence 99998877666544 456789999999999999999999999999888776654 4567889999998876654433
Q ss_pred ------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec
Q 022716 170 ------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS 231 (293)
Q Consensus 170 ------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s 231 (293)
...+.+++|+|++++|++|+.|++|++||+++++++.++.+|...|.+++|+|++++|++++
T Consensus 230 i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 230 IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEc
Q 022716 232 EDLFIDISNV 241 (293)
Q Consensus 232 ~d~~i~iw~~ 241 (293)
.|+.|++||.
T Consensus 310 ~d~~i~vwd~ 319 (321)
T 3ow8_A 310 DDQEIHIYDC 319 (321)
T ss_dssp TTCCEEEEEC
T ss_pred CCCeEEEEeC
Confidence 9999999996
No 47
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=261.33 Aligned_cols=251 Identities=14% Similarity=0.230 Sum_probs=193.1
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC-------CceeEEEeeCCc------------CCeeEEEEcCCC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-------GKVKDIELRGHA------------DSVDQLCWDPKH 78 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~-------~~~~~~~~~~h~------------~~i~~~~~~~~~ 78 (293)
.|.+.|++++|+|+|++||+|+.||.|++|++..... .......+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 5689999999999999999999999999999975321 111234577898 889999999975
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCeeee---------------------------------------e--eeecCceEEEEE
Q 022716 79 A-DLIATASGDKTVRLWDARSGKCSQ---------------------------------------Q--AELSGENINITY 116 (293)
Q Consensus 79 ~-~~l~s~~~d~~i~vwd~~~~~~~~---------------------------------------~--~~~~~~~~~~~~ 116 (293)
. ..|++++.|+.|++||+.++.... . ..+...+.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 3 588999999999999987643310 1 123456778999
Q ss_pred cCCCCEEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC-CEEEEecCCCcE
Q 022716 117 KPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLV 194 (293)
Q Consensus 117 ~~~~~~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i 194 (293)
+|++++|+++ .|+.|++||++... ........ + ..+..+...+.+++|+|++ ++|++|+.||.|
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---------~----~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK---------P----ANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC---------C----SSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc---------c----ccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 9999999998 79999999998422 22211000 0 0022456678999999998 999999999999
Q ss_pred EEEeCCCCEE----EEEeeccCC------------CeeEEEEccCCCEEEEecCCCcEEEEEcCC-CCEEEEEecCCCcc
Q 022716 195 SLWDISEMLC----VRTFTKLEW------------PVRTISFSHTGDYIASASEDLFIDISNVHT-GRTVHQIPCRAAMN 257 (293)
Q Consensus 195 ~iwd~~~~~~----~~~~~~~~~------------~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~i~ 257 (293)
++||++++.. +..+..|.. +|.+++|+|+|++|++++. +.|++||+.+ ++.+..+..+..+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 9999988765 567777765 8999999999999999999 9999999987 77666665544433
Q ss_pred ----------------eeEECCCCCeEEEEEcCCCCCCCCcc
Q 022716 258 ----------------SVEWNPKYNLLAYAGDDKNKYQADEG 283 (293)
Q Consensus 258 ----------------~~~~sp~~~~la~~~~d~~~~~~~~~ 283 (293)
.++|+|++++|++|+.|+.+++|+-.
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 39999999999999998655555443
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-35 Score=256.90 Aligned_cols=261 Identities=12% Similarity=0.180 Sum_probs=212.0
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
.+| ..+....|+|++++|++|+.||.|++||+... .....+.+|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 95 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~l~s~s~d~~i~iwd~ 168 (420)
T 3vl1_A 95 KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSV 168 (420)
T ss_dssp CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EEEEETTSSSSCEEEEEECTT-SSEEEEEETTSEEEEEET
T ss_pred ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc----ceeeecccccCccEEEEECCC-CCEEEEEeCCCeEEEEeC
Confidence 344 45666688999999999999999999998742 222345689999999999997 468999999999999999
Q ss_pred CCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec----ccceeeeeEEecCCCEEEEecCCC
Q 022716 97 RSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----FGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 97 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
.++++...+. +...+.+++|+|+++.|++++.|+++++||+++.+...... ....+..+.|.+.........+..
T Consensus 169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 9988777665 45667889999999999999999999999999887766654 334567777766655444444556
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCE-EE
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRT-VH 248 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~-~~ 248 (293)
.+.+++|+|++++|++|+.||.|++||++++..+..+. .|..+|.+++|+|+++ +|++|+.|+.|++||+.+++. +.
T Consensus 249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred cccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence 77889999999999999999999999999887776664 4778999999999999 999999999999999998754 44
Q ss_pred EEe--cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 249 QIP--CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 249 ~~~--~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.+. +...+.++.| |++++|++++.| +.+|||+++.
T Consensus 329 ~~~~~~~~~v~~~~~-~~~~~l~s~~~d--------~~v~iw~~~~ 365 (420)
T 3vl1_A 329 EFLINEGTPINNVYF-AAGALFVSSGFD--------TSIKLDIISD 365 (420)
T ss_dssp EEEESTTSCEEEEEE-ETTEEEEEETTT--------EEEEEEEECC
T ss_pred hhhccCCCCceEEEe-CCCCEEEEecCC--------ccEEEEeccC
Confidence 443 4556777755 568899999987 5777887653
No 49
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.6e-35 Score=248.24 Aligned_cols=255 Identities=15% Similarity=0.097 Sum_probs=211.4
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCC-EEEEEeCCCeEEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD-LIATASGDKTVRLW 94 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~-~l~s~~~d~~i~vw 94 (293)
..+|.+.|.+++|+|++++|++|+.||.|++|++..... ......+.+|...|.+++|+|+ +. +|++++.|+.|++|
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKV 84 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc-cccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEE
Confidence 458999999999999999999999999999999975421 1223345689999999999997 57 89999999999999
Q ss_pred eC-CCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc---------cceeeeecccceeeeeEEecCCC
Q 022716 95 DA-RSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRK---------FKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 95 d~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~---------~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
|+ .+++...... +...+.+++|+| +..+++++.|+.+++||+++ .++.....+...+..+.|++.+
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR- 162 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-
T ss_pred EeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-
Confidence 99 8876644434 556778999999 99999999999999999987 6666666666677777776543
Q ss_pred EE-----------------------EEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCC------EEEEEeeccC
Q 022716 163 MF-----------------------FLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEM------LCVRTFTKLE 212 (293)
Q Consensus 163 ~~-----------------------~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~------~~~~~~~~~~ 212 (293)
.+ ....+...+.+++++| +++++++++.||.|++|+++.. .....+..|.
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence 11 1112334678999999 9999999999999999998765 5566777775
Q ss_pred C---------CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEEEEcCCC
Q 022716 213 W---------PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 213 ~---------~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
. +|.+++|+|++++|++++.|+.|++||+.+++.+..+.. ..+|.+++ |++++|++++.|+.
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 5 999999999999999999999999999999998887764 56799999 99999999999987
No 50
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3e-35 Score=254.75 Aligned_cols=225 Identities=23% Similarity=0.393 Sum_probs=190.3
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|.+.|.+++|+|++++|++|+.||+|++||+.... ....+.+|...|.+++|+|+ +..|++|+.|+.|
T Consensus 142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i 216 (410)
T 1vyh_C 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE----CIRTMHGHDHNVSSVSIMPN-GDHIVSASRDKTI 216 (410)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC----EEECCCCCSSCEEEEEECSS-SSEEEEEETTSEE
T ss_pred EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eeEEEcCCCCCEEEEEEeCC-CCEEEEEeCCCeE
Confidence 346788999999999999999999999999999999986421 23356789999999999997 4689999999999
Q ss_pred EEEeCCCCeeeeeeeec-CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecC---------
Q 022716 92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMT--------- 160 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~--------- 160 (293)
++||++++.+...+..+ ..+..+.++|+++++++++.|+++++||+++....... .+...+..+.|+|.
T Consensus 217 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 296 (410)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred EEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhh
Confidence 99999999887776644 45678899999999999999999999999887665443 24456677777664
Q ss_pred -----------CCEEE---------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 161 -----------GEMFF---------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 161 -----------~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
+..+. +..+...+.+++|+|++++|++|+.|++|++||+++++++..+
T Consensus 297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~ 376 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376 (410)
T ss_dssp CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred ccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 22222 2234456889999999999999999999999999999888999
Q ss_pred eccCCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
.+|...|.+++|+|++++|++|+.|+.|++|++
T Consensus 377 ~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999999999986
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-37 Score=261.83 Aligned_cols=240 Identities=15% Similarity=0.199 Sum_probs=187.5
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
+..|.++|.+++|+|+|++|++|+.||.|++|++.... ......+.+|...|.+++|+|++ .+|++++.|+.|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEE
Confidence 44567899999999999999999999999999997421 02223567899999999999974 6889999999999999
Q ss_pred CCCCe---eeee-eeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec-CC
Q 022716 96 ARSGK---CSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GN 170 (293)
Q Consensus 96 ~~~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~ 170 (293)
+.++. .... ..+...+.+++|+|+++.|++++.|+.+++||++........ ..+.. +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------------~~~~~~h~ 146 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS-----------------KHLKRPLR 146 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC-----------------EEECSSCC
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee-----------------eEeecccC
Confidence 98876 2222 335567889999999999999999999999999875421100 01122 56
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCC------------------CCEEEEEeeccCCCeeEEEEccCCCEEEEecC
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDIS------------------EMLCVRTFTKLEWPVRTISFSHTGDYIASASE 232 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~------------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~ 232 (293)
..+.+++|+|++++|++|+.|+.|++||++ .+.++..+ .|..+|.+++|+|++++|++++.
T Consensus 147 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~ 225 (377)
T 3dwl_C 147 STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH 225 (377)
T ss_dssp SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET
T ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC
Confidence 778999999999999999999999999984 34566666 89999999999999999999999
Q ss_pred CCcEEEEEcCCCCE----EEEEe-cCCCcceeEECCCCCeEEEEEcCCC
Q 022716 233 DLFIDISNVHTGRT----VHQIP-CRAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 233 d~~i~iw~~~~~~~----~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
|+.|++||+.+++. +..+. +..+|.+++|+|++.+|+++++++.
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 274 (377)
T 3dwl_C 226 DSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP 274 (377)
T ss_dssp TTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSE
T ss_pred CCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcE
Confidence 99999999999876 44443 4567999999999999999986653
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=263.73 Aligned_cols=249 Identities=11% Similarity=0.092 Sum_probs=192.6
Q ss_pred ecCccccEEEEEECCC------CCeEEEEeCCCcEEEeecCCCCCCc-------eeEEEeeCCcCCeeEEEEcCCCCCEE
Q 022716 16 YTGHKKKVHSVAWNCT------GTKLASGSVDQTARVWHIEPHGHGK-------VKDIELRGHADSVDQLCWDPKHADLI 82 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~------~~~l~s~~~dg~v~iw~~~~~~~~~-------~~~~~~~~h~~~i~~~~~~~~~~~~l 82 (293)
+.+|.+.|.+++|+|+ +.+||+|+.||+|++||+....... .....+.+|...|.+++|++. ..|
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~l 280 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTV 280 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEE
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeE
Confidence 5577889999999997 5799999999999999997542110 012356789999999999974 479
Q ss_pred EEEeCCCeEEEEeCCCCeee-eeee-ecCceEEE--EEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716 83 ATASGDKTVRLWDARSGKCS-QQAE-LSGENINI--TYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 83 ~s~~~d~~i~vwd~~~~~~~-~~~~-~~~~~~~~--~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
++|+.||+|++||++++... ..+. +...+.++ +|+|++ .+|++++.|+++++||+++.+........
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~-------- 352 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR-------- 352 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE--------
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc--------
Confidence 99999999999999876432 3333 34567777 567887 89999999999999999876543321100
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEE
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFID 237 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~ 237 (293)
.....+.+++|+|++..+++++.|++|++||++++.++.++.+|..+|.+|+|+|+|++|++|+.|++|+
T Consensus 353 ----------~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~ 422 (524)
T 2j04_B 353 ----------FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLI 422 (524)
T ss_dssp ----------CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred ----------cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEE
Confidence 0112356788999999999999999999999999887778889999999999999999999999999999
Q ss_pred EEEcCCC-----C---------EE------------------------------EEE-ecCCCcceeEECCCCC---eEE
Q 022716 238 ISNVHTG-----R---------TV------------------------------HQI-PCRAAMNSVEWNPKYN---LLA 269 (293)
Q Consensus 238 iw~~~~~-----~---------~~------------------------------~~~-~~~~~i~~~~~sp~~~---~la 269 (293)
+||...+ + .+ ..+ .+..+|++|+|||+++ .+|
T Consensus 423 lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lA 502 (524)
T 2j04_B 423 ITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYA 502 (524)
T ss_dssp CCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEE
T ss_pred EEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHH
Confidence 9985321 0 01 001 1345789999999965 888
Q ss_pred EEEcCCCCCCCCcceEEEEeeec
Q 022716 270 YAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 270 ~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+|+.| |++|||+++-
T Consensus 503 sg~~~--------g~vrlw~l~~ 517 (524)
T 2j04_B 503 FSNSA--------GLLTLEYLSL 517 (524)
T ss_dssp EECTT--------SEEEEEECSC
T ss_pred hhccC--------ceEEEEEccc
Confidence 88876 7899998863
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4e-35 Score=254.05 Aligned_cols=247 Identities=17% Similarity=0.306 Sum_probs=197.3
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+.+.+|...|.+++|+|++++|++|+.||.|++||+..... ...+.+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus 132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN----PRTLIGHRATVTDIAIIDR-GRNVLSASLDGTIR 206 (420)
T ss_dssp EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC----CEEEECCSSCEEEEEEETT-TTEEEEEETTSCEE
T ss_pred eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC----ceEEcCCCCcEEEEEEcCC-CCEEEEEcCCCcEE
Confidence 344579999999999999999999999999999999975321 2356789999999999997 46899999999999
Q ss_pred EEeCCCCeeeeeeeec-------------------------CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec
Q 022716 93 LWDARSGKCSQQAELS-------------------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK 147 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~ 147 (293)
+||++++++...+..+ ..+.+++|+|+++++++++.|+.+++||+++........
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence 9999999877765432 222334567899999999999999999998765443221
Q ss_pred ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEE-EEEeec-cCCCeeEEEEccCC
Q 022716 148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLC-VRTFTK-LEWPVRTISFSHTG 224 (293)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~sp~~ 224 (293)
..+...+.+++|+|+++ +|++|+.||.|++||++++.. +..+.. +..++.++. .|++
T Consensus 287 -------------------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~ 346 (420)
T 3vl1_A 287 -------------------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAG 346 (420)
T ss_dssp -------------------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETT
T ss_pred -------------------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCC
Confidence 12456788999999998 999999999999999987643 556666 567788885 4688
Q ss_pred CEEEEecCCCcEEEEEcCCCC----------EEEEEecCCCcceeEECCCCC---eEEEEEcCCCCCCCCcceEEEEeee
Q 022716 225 DYIASASEDLFIDISNVHTGR----------TVHQIPCRAAMNSVEWNPKYN---LLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw~~~~~~----------~~~~~~~~~~i~~~~~sp~~~---~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
++|++++.|+.|++|++.... ......+...|.+++|+|+++ .++++|.+ +.+++|++|
T Consensus 347 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~--------g~~~~~~~~ 418 (420)
T 3vl1_A 347 ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN--------NFCALYNLS 418 (420)
T ss_dssp EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT--------TEEEEEESC
T ss_pred CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC--------ceEEEEecc
Confidence 999999999999999987632 122334567899999999999 55556544 689999998
Q ss_pred c
Q 022716 292 N 292 (293)
Q Consensus 292 ~ 292 (293)
+
T Consensus 419 ~ 419 (420)
T 3vl1_A 419 N 419 (420)
T ss_dssp C
T ss_pred C
Confidence 7
No 54
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.1e-35 Score=252.51 Aligned_cols=251 Identities=20% Similarity=0.322 Sum_probs=200.3
Q ss_pred ceeecCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCc---eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 13 SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~---~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
...+.+|.+.|.+++|+| ++++|++|+.||+|++|++....... .....+.+|...|.+++|+|++..+|++++.|
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence 345779999999999999 89999999999999999997642110 12345779999999999999876799999999
Q ss_pred CeEEEEeCCCCeeeeee--e-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 89 KTVRLWDARSGKCSQQA--E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
+.|++||+.++++...+ . +...+.+++|+|++++|++++.|+.+++||+++.+......
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------ 215 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD------------------ 215 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE------------------
T ss_pred CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec------------------
Confidence 99999999999887766 2 45667899999999999999999999999998866544321
Q ss_pred EecCCC-CEEEEEECCCCCEEEEe---cCCCcEEEEeCCCCEE-EEEe-eccCCCeeEEEEccCCCEEE-EecCCCcEEE
Q 022716 166 LTTGNA-GCYCIAIDPMGRYFAVG---SADSLVSLWDISEMLC-VRTF-TKLEWPVRTISFSHTGDYIA-SASEDLFIDI 238 (293)
Q Consensus 166 ~~~~~~-~~~~~~~~~~~~~l~~g---s~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~l~~sp~~~~l~-s~s~d~~i~i 238 (293)
..+.. .+.+++|+|++++|++| +.|+.|++||++++.. +... ..+...+.+++|+|++++|+ +|+.|+.|++
T Consensus 216 -~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 216 -RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp -CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred -cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 11222 25678899999999999 8999999999987543 2222 24667899999999999986 5668999999
Q ss_pred EEcCCCCE-E---EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 239 SNVHTGRT-V---HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 239 w~~~~~~~-~---~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
|++.+++. + ..+.+..++.+++|+|++.++++++ +.+|+|+++.
T Consensus 295 ~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~~----------~~~~~~~l~~ 342 (402)
T 2aq5_A 295 FEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNKC----------EIARFYKLHE 342 (402)
T ss_dssp EEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGGT----------EEEEEEEEET
T ss_pred EEecCCCcceEeecccccCCcccceEEecccccceecc----------eeEEEEEcCC
Confidence 99998873 3 3344557899999999998877532 3678887753
No 55
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=274.07 Aligned_cols=248 Identities=21% Similarity=0.326 Sum_probs=198.7
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i~ 92 (293)
..+.+|.+.|++++|+|+|++|++|+.||.|++||+... .......+.+|...|.+++|+|.. +.+|++|+.||.|+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 457899999999999999999999999999999998632 122334577999999999998752 57899999999999
Q ss_pred EEeCCCCe--eeeeee-ecCceEEEEEcCC--CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716 93 LWDARSGK--CSQQAE-LSGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (293)
Q Consensus 93 vwd~~~~~--~~~~~~-~~~~~~~~~~~~~--~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 167 (293)
+||+.+++ ...... +...+.+++|+|+ ++.+++++.|+.|++||+++...... ....
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~------------------~~~~ 142 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------------------IIID 142 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC------------------EEEE
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce------------------eEee
Confidence 99999886 333333 4566789999999 99999999999999999987532211 1223
Q ss_pred cCCCCEEEEEECC-------------CCCEEEEecCCCcEEEEeCCCC----EEEEEeeccCCCeeEEEEccC---CCEE
Q 022716 168 TGNAGCYCIAIDP-------------MGRYFAVGSADSLVSLWDISEM----LCVRTFTKLEWPVRTISFSHT---GDYI 227 (293)
Q Consensus 168 ~~~~~~~~~~~~~-------------~~~~l~~gs~d~~i~iwd~~~~----~~~~~~~~~~~~v~~l~~sp~---~~~l 227 (293)
.+...+.+++++| ++..+++|+.||.|++||++++ .....+.+|..+|.+++|+|+ +++|
T Consensus 143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l 222 (753)
T 3jro_A 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 222 (753)
T ss_dssp CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEE
Confidence 4556677888888 5899999999999999998765 566778889999999999999 8999
Q ss_pred EEecCCCcEEEEEcCCCCEE------EEEecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 228 ASASEDLFIDISNVHTGRTV------HQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 228 ~s~s~d~~i~iw~~~~~~~~------~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
++|+.|+.|++||+.++... ....+...|.+++|+|++++|++++.|+.+++|+
T Consensus 223 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp EEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred EEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 99999999999999886421 1123456799999999999999999987655554
No 56
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.6e-34 Score=265.82 Aligned_cols=258 Identities=17% Similarity=0.179 Sum_probs=217.6
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|.+.|.+++|+|++++|++|+.||.|++||+... .....+.+|..+|.+++|+|+ +.+|++++.|+.|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i 79 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ----VEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRI 79 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC----ceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeE
Confidence 34678899999999999999999999999999999998742 233457789999999999997 4689999999999
Q ss_pred EEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeee-cccceeeeeEEec-CCCEEEEe
Q 022716 92 RLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRR-KFGYEVNEIAWNM-TGEMFFLT 167 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~-~~~~~~~~v~~~~-~~~~~~~~ 167 (293)
++||+.+++....+. +.+.+.+++|+|+++++++++.|+.+++||+++. ...... .+...+..+.|+| .+..+...
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 999999998877766 4566889999999999999999999999999876 333332 3456788899998 55444433
Q ss_pred cCC----------------------CCEEEEEECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC
Q 022716 168 TGN----------------------AGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 223 (293)
Q Consensus 168 ~~~----------------------~~~~~~~~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 223 (293)
+.+ ..+.+++++| ++.++++|+.||.|++||++++..+..+.+|..+|.+++|+|+
T Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 221 4567889999 9999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEECCCCC--eEEEEEcC
Q 022716 224 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWNPKYN--LLAYAGDD 274 (293)
Q Consensus 224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~--~la~~~~d 274 (293)
+++|++++.|+.|++||..+++.+..+.. ..++.+++|+|++. ++++++++
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 293 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN 293 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCC
Confidence 99999999999999999999998887754 46799999999986 35655543
No 57
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.2e-35 Score=247.56 Aligned_cols=226 Identities=17% Similarity=0.161 Sum_probs=179.2
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
..+|...|.+++|+|++. +++++.||+|++||+..............+|...|.+++|+|+ +.+|++|+.|+.|++||
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEE
Confidence 457889999999999975 6678899999999997643333333456689999999999997 46899999999999999
Q ss_pred CCCCeeeeeeee-cCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeec---ccceeeeeEEecCCCEEE-Eec-
Q 022716 96 ARSGKCSQQAEL-SGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFF-LTT- 168 (293)
Q Consensus 96 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~- 168 (293)
+.++++...+.. ...+.+++|+|++. .+++++.|++|++||+++.++..... ....+..+.|+|.+..++ ...
T Consensus 168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 999988877664 45677899999875 78899999999999999877655443 344578888988754333 222
Q ss_pred --------------------CCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEcc-CCCE
Q 022716 169 --------------------GNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSH-TGDY 226 (293)
Q Consensus 169 --------------------~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~ 226 (293)
+...+.+++|+|++ ++|++|+.|++|+|||+++++.+..+ +|..+|++|+|+| ++++
T Consensus 248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~ 326 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSK 326 (357)
T ss_dssp SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTE
T ss_pred ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCE
Confidence 23468899999987 67999999999999999999877654 8999999999999 7999
Q ss_pred EEEecCCCcEEEEEcCCC
Q 022716 227 IASASEDLFIDISNVHTG 244 (293)
Q Consensus 227 l~s~s~d~~i~iw~~~~~ 244 (293)
|+||+.|+.|++|++.+.
T Consensus 327 l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 327 FTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEETTSCEEEEECC--
T ss_pred EEEEcCCCeEEEEECCCC
Confidence 999999999999998654
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.2e-33 Score=246.46 Aligned_cols=260 Identities=19% Similarity=0.297 Sum_probs=207.3
Q ss_pred ceeecCcccc-EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 13 SREYTGHKKK-VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~-v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
...+.+|... +.++.+ ++++|++|+.||+|++||+... .....+.+|...|.+++|+|++ .+++|+.|+.|
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i 185 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK----KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTV 185 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCE
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC----cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCE
Confidence 3567899877 567766 5679999999999999998753 2334577999999999998864 89999999999
Q ss_pred EEEeCCCCeeeeeee-ecCceEEEEEc--CCCCEEEEEeCCCeEEEEEccccceeee-----------------------
Q 022716 92 RLWDARSGKCSQQAE-LSGENINITYK--PDGTHIAVGNRDDELTILDVRKFKPIHR----------------------- 145 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~~~d~~i~l~d~~~~~~~~~----------------------- 145 (293)
++||++++++...+. +...+.++++. ++++++++++.|+.+++||+++......
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 999999998877766 45667778887 6788999999999999999987543211
Q ss_pred -ecccceeeee-----------------EEecCCC--EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEE
Q 022716 146 -RKFGYEVNEI-----------------AWNMTGE--MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 205 (293)
Q Consensus 146 -~~~~~~~~~v-----------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~ 205 (293)
..+...+..+ .|+.... ...+..+...+.+++++|+++++++|+.||.|++||+++++++
T Consensus 266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 0111112222 2332211 1123345567899999999999999999999999999999999
Q ss_pred EEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE
Q 022716 206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF 285 (293)
Q Consensus 206 ~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~ 285 (293)
..+.+|..+|.+++|+ +++|++|+.|+.|++||+.++...........+..++|+|+++++++++ |+ .+
T Consensus 346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg--------~i 414 (464)
T 3v7d_B 346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-EN--------QF 414 (464)
T ss_dssp EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TT--------EE
T ss_pred EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CC--------eE
Confidence 9999999999999997 5899999999999999999988877777777888999999999999998 53 56
Q ss_pred EEEeee
Q 022716 286 RIYGFE 291 (293)
Q Consensus 286 ~~~~~~ 291 (293)
+||+++
T Consensus 415 ~iwd~~ 420 (464)
T 3v7d_B 415 NIYNLR 420 (464)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 677665
No 59
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-34 Score=246.88 Aligned_cols=262 Identities=17% Similarity=0.278 Sum_probs=203.8
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
....+.+|...|.+++|+|++++|++++.||.|++||+.... ......+..|...|.+++|+|+ +.+|++++.|+.|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v 120 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT--WKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVI 120 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE--EEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe--eeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEE
Confidence 445678999999999999999999999999999999996431 2223345679999999999997 4789999999999
Q ss_pred EEEeCCCCee---eeee--eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe---cCCCE
Q 022716 92 RLWDARSGKC---SQQA--ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN---MTGEM 163 (293)
Q Consensus 92 ~vwd~~~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~---~~~~~ 163 (293)
++||++.+.. .... .+...+.+++|+|+++++++++.|+.+++||++......... ...|. +.+..
T Consensus 121 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA------PTPWGSKMPFGEL 194 (372)
T ss_dssp EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC------CBTTBSCCCTTCE
T ss_pred EEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc------ccccccccchhhh
Confidence 9999987652 2222 135567899999999999999999999999976432110000 00000 01111
Q ss_pred -EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 164 -FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 164 -~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
..+..+...+.+++++|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++| .|+.|++|++.
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 1222456678999999999999999999999999999998999999999999999999999999888 99999999998
Q ss_pred C--CCE--------------------------------E------EEE--ecCCCcceeEEC-CCC---CeEEEEEcCCC
Q 022716 243 T--GRT--------------------------------V------HQI--PCRAAMNSVEWN-PKY---NLLAYAGDDKN 276 (293)
Q Consensus 243 ~--~~~--------------------------------~------~~~--~~~~~i~~~~~s-p~~---~~la~~~~d~~ 276 (293)
+ +.. . ..+ .+..+|++++|+ +++ ++|++|+.|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~D-- 351 (372)
T 1k8k_C 274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD-- 351 (372)
T ss_dssp TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETT--
T ss_pred CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCC--
Confidence 7 420 0 111 356689999976 666 999999988
Q ss_pred CCCCCcceEEEEeee
Q 022716 277 KYQADEGVFRIYGFE 291 (293)
Q Consensus 277 ~~~~~~~~~~~~~~~ 291 (293)
+.+|||+++
T Consensus 352 ------g~i~~W~~~ 360 (372)
T 1k8k_C 352 ------GGMSIWDVR 360 (372)
T ss_dssp ------SEEEEEEHH
T ss_pred ------CceEEEEec
Confidence 578888775
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-33 Score=243.13 Aligned_cols=238 Identities=21% Similarity=0.315 Sum_probs=195.1
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
.|...|.+++|+|++++|++|+.||.|++||+.... ....+.+|...|.++.|++ ..|++++.|+.|++||++
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT----KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe----EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecc
Confidence 488999999999999999999999999999997532 2345678999999999953 589999999999999998
Q ss_pred C-Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 98 S-GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 98 ~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
. ......+. +.+.+.+++|+|+++++++++.|+.|++||+++..+... +..+...+.+
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~--------------------~~~~~~~v~~ 264 (401)
T 4aez_A 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT--------------------KTNHNAAVKA 264 (401)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE--------------------ECCCSSCCCE
T ss_pred cCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE--------------------ecCCcceEEE
Confidence 4 34444443 456778899999999999999999999999987654432 2234556778
Q ss_pred EEECCCC-CEEEEec--CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEE--ecCCCcEEEEEcCCCCEEEE-
Q 022716 176 IAIDPMG-RYFAVGS--ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIAS--ASEDLFIDISNVHTGRTVHQ- 249 (293)
Q Consensus 176 ~~~~~~~-~~l~~gs--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s--~s~d~~i~iw~~~~~~~~~~- 249 (293)
++++|++ .++++|+ .|+.|++||++++..+..+. +..+|.+++|+|+++++++ |+.|+.|++|+..+++....
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~ 343 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV 343 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence 9999976 5666654 79999999999998888774 5678999999999999998 55899999999998765443
Q ss_pred -E-ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 250 -I-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 250 -~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
+ .+...|.+++|+|++.+|++++.|+ .++||+++
T Consensus 344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg--------~i~iw~~~ 379 (401)
T 4aez_A 344 DIPAHDTRVLYSALSPDGRILSTAASDE--------NLKFWRVY 379 (401)
T ss_dssp EEECCSSCCCEEEECTTSSEEEEECTTS--------EEEEEECC
T ss_pred EecCCCCCEEEEEECCCCCEEEEEeCCC--------cEEEEECC
Confidence 3 3567899999999999999999884 66777665
No 61
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-33 Score=237.05 Aligned_cols=254 Identities=16% Similarity=0.195 Sum_probs=205.4
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
|.++|.+++|+|||++++++..++.+..|.... ........+|...|.+++|+|+ +.+|++++ |+.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR----HARQINTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCS----EEEEEEEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCC----ccccceeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCC
Confidence 567899999999999999998888877775432 2233445689999999999997 46888888 99999999987
Q ss_pred Ceeeee---e---eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce--eee-ecccceeeeeEEecCCCEEEEec-
Q 022716 99 GKCSQQ---A---ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHR-RKFGYEVNEIAWNMTGEMFFLTT- 168 (293)
Q Consensus 99 ~~~~~~---~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~~~- 168 (293)
+..... . .....+.+++|+|+++.+++++.|+.+++||+++... ... ......+..+.|++.+..++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 653222 1 2345678899999999999999999999999987663 222 22445678888888776655443
Q ss_pred --------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716 169 --------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 169 --------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 228 (293)
+...+.+++++|+++++++++.|+.|++||+++++.+..+ .+..++.+++|+|++++|+
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLA 240 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEE
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEE
Confidence 2346789999999999999999999999999999887766 4678899999999999999
Q ss_pred EecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCC
Q 022716 229 SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
+++.|+.|++||..+++......+..+|.+++|+|++++|++++.|+.+++
T Consensus 241 ~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 241 VGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEE
Confidence 999999999999999887665567788999999999999999998854433
No 62
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7.2e-34 Score=241.47 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=177.0
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCeE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~i 91 (293)
...+.+|...|.+++|+|++..|++|+.||+|++||+.... ....+.+|...|.++.++|.. +.+|++|+.|+.|
T Consensus 147 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v 222 (354)
T 2pbi_B 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ----LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222 (354)
T ss_dssp CEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred ceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe----EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence 35567899999999999999999999999999999997532 234578999999999998853 4789999999999
Q ss_pred EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
++||++++++...+.. ...+.+++|+|++..+++++.|+++++||++........... ...
T Consensus 223 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~------------------~~~ 284 (354)
T 2pbi_B 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE------------------SII 284 (354)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT------------------TCC
T ss_pred EEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC------------------Ccc
Confidence 9999999988777654 456778999999999999999999999999876543321110 112
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
..+.+++|+|++++|++|+.|++|++||+.++..+..+.+|..+|.+++|+|+|++|++|+.|+.|++|+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 3567899999999999999999999999999988889999999999999999999999999999999995
No 63
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-35 Score=263.51 Aligned_cols=243 Identities=9% Similarity=0.078 Sum_probs=185.1
Q ss_pred ccccEEEEEECCCC---------CeEEE-------------------EeCCCcEEEeecCCCCCCceeEEEeeCCcCCee
Q 022716 19 HKKKVHSVAWNCTG---------TKLAS-------------------GSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70 (293)
Q Consensus 19 h~~~v~~l~~s~~~---------~~l~s-------------------~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~ 70 (293)
+.+.|.+++|+|++ ++||+ ++.|++|+||+++...........+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56788888888876 45555 567899999999754322211234567888999
Q ss_pred EEEEcCC-----CCCEEEEEeCCCeEEEEeCCCCeee-----------eeee-ecCceEEEEEcCCCCEEEEEeCCCeEE
Q 022716 71 QLCWDPK-----HADLIATASGDKTVRLWDARSGKCS-----------QQAE-LSGENINITYKPDGTHIAVGNRDDELT 133 (293)
Q Consensus 71 ~~~~~~~-----~~~~l~s~~~d~~i~vwd~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~ 133 (293)
.++|+|. +..+|+|++.|++|++||+..+.+. ..+. ....+.+++|+|++ .|++|+.|++|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE
Confidence 9999996 2469999999999999999766422 1222 23567889999864 899999999999
Q ss_pred EEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE--EECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeec
Q 022716 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI--AIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTK 210 (293)
Q Consensus 134 l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~ 210 (293)
+||+++.... ...+..+...+.++ +++|++ .+||+|+.|++|+|||+++++++..+.+
T Consensus 291 lWD~~~~~~~-------------------~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~ 351 (524)
T 2j04_B 291 EFDLTDPEVP-------------------SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS 351 (524)
T ss_dssp EEETTBCSSC-------------------SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred EEECCCCCCc-------------------eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc
Confidence 9999864211 01223456678888 567887 8999999999999999988766556666
Q ss_pred cCC--CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 211 LEW--PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 211 ~~~--~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
|.. .|.+++|+|+++.+++++.|++|++||+.++..++.+ .+..+|++|+|||++++||+|+.|+.+++|+
T Consensus 352 ~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 543 5889999999999999999999999999998876554 5677899999999999999999998877765
No 64
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.9e-33 Score=251.28 Aligned_cols=267 Identities=17% Similarity=0.256 Sum_probs=214.2
Q ss_pred cceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC---CeeEEEEcCCCCCEEEEEeC
Q 022716 12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~~l~s~~~ 87 (293)
....+.+|...|.+++|+|+++ .|++++.||.|++||+... .....+.+|.. .|.+++|+|+++.+|++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF----KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB----EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc----ceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence 3456779999999999999998 7999999999999998642 23345778998 99999999973578999999
Q ss_pred CCeEEEEeCCCCeeeeee-----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc-------------
Q 022716 88 DKTVRLWDARSGKCSQQA-----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG------------- 149 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~------------- 149 (293)
|+.|++||+.+++....+ .+...+.+++|+ +++++++++.|+.+++||+++.+........
T Consensus 228 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (615)
T 1pgu_A 228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 306 (615)
T ss_dssp TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence 999999999999887776 456678889999 9999999999999999998765443222111
Q ss_pred ------------------------------------------------------------------ceeeeeEEe-----
Q 022716 150 ------------------------------------------------------------------YEVNEIAWN----- 158 (293)
Q Consensus 150 ------------------------------------------------------------------~~~~~v~~~----- 158 (293)
..+..+.|.
T Consensus 307 ~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l 386 (615)
T 1pgu_A 307 TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEY 386 (615)
T ss_dssp EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCC
T ss_pred CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEE
Confidence 001111110
Q ss_pred -----------------------------cC--------------------------------------CCEEEE-----
Q 022716 159 -----------------------------MT--------------------------------------GEMFFL----- 166 (293)
Q Consensus 159 -----------------------------~~--------------------------------------~~~~~~----- 166 (293)
+. +..+..
T Consensus 387 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d 466 (615)
T 1pgu_A 387 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEG 466 (615)
T ss_dssp EEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTT
T ss_pred EEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCC
Confidence 00 111111
Q ss_pred ------------------ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-cCCCeeEEEEcc-----
Q 022716 167 ------------------TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISFSH----- 222 (293)
Q Consensus 167 ------------------~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~sp----- 222 (293)
..+...+.+++|+|++++|++|+.|+.|++||+++++.+..+.+ |..+|.+++|+|
T Consensus 467 ~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 546 (615)
T 1pgu_A 467 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA 546 (615)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred CeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccc
Confidence 11234678999999999999999999999999999999988887 999999999999
Q ss_pred -----CCCEEEEecCCCcEEEEEcCCC-CEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 223 -----TGDYIASASEDLFIDISNVHTG-RTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 223 -----~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
++++|++|+.|+.|++|++.++ +.+..+. +..+|++++|+|++. |++++.| +.++||+++.
T Consensus 547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d--------~~v~iw~~~~ 614 (615)
T 1pgu_A 547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD--------ACIKRWNVVL 614 (615)
T ss_dssp ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT--------SCEEEEEEC-
T ss_pred cccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC--------ceEEEEeeec
Confidence 9999999999999999999997 5666654 567899999999999 9999987 5788998864
No 65
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.8e-33 Score=241.10 Aligned_cols=243 Identities=19% Similarity=0.300 Sum_probs=196.1
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
+.+|...|++++|+|+|++|++|+.||+|++||+... .....+.+|...+.++.+++ .+|++|+.|+.+++||
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~----~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHD 215 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC----cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEee
Confidence 3477889999999999999999999999999999753 23345779999999998864 5899999999999999
Q ss_pred CCCCee-eeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 96 ARSGKC-SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 96 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
...... ...+. +...+..+.+.|+++++++++.|+.+++||.+....... .......+...+
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~----------------~~~~~~~~~~~V 279 (420)
T 4gga_A 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV----------------PLQTFTQHQGAV 279 (420)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC----------------CSEEECCCSSCE
T ss_pred ecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce----------------eeeeecccCCce
Confidence 876543 33333 345567789999999999999999999999876542211 011223455678
Q ss_pred EEEEECCCCC-EEEE--ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec--CCCcEEEEEcCCCCEEE
Q 022716 174 YCIAIDPMGR-YFAV--GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--EDLFIDISNVHTGRTVH 248 (293)
Q Consensus 174 ~~~~~~~~~~-~l~~--gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~d~~i~iw~~~~~~~~~ 248 (293)
.+++++|.+. .+++ |+.|++|++||+.++.+...+..+ ..+.++.|+|+++.+++++ .|+.|+|||..+++.+.
T Consensus 280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~ 358 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 358 (420)
T ss_dssp EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE
Confidence 8889998764 4444 568999999999999988877654 5799999999999887764 79999999999999998
Q ss_pred EEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 249 QIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 249 ~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
.+. |..+|.+++|+|++++||+||.| +++|||++
T Consensus 359 ~l~gH~~~V~~l~~spdg~~l~S~s~D--------~tvriWdv 393 (420)
T 4gga_A 359 ELKGHTSRVLSLTMSPDGATVASAAAD--------ETLRLWRC 393 (420)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETT--------TEEEEECC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecC--------CeEEEEEC
Confidence 876 56789999999999999999998 46777775
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-35 Score=252.52 Aligned_cols=263 Identities=17% Similarity=0.286 Sum_probs=210.6
Q ss_pred ccccEEEEEECCCCC-eEEEE----------eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 19 HKKKVHSVAWNCTGT-KLASG----------SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 19 h~~~v~~l~~s~~~~-~l~s~----------~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
+...|.+++|+|+|+ +|++| +.||.|++|++....... ......|...|.+++|+|++ .+|++++.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~-~~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK--PIASLQVDSKFNDLDWSHNN-KIIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS--CSCCCCCSSCEEEEEECSSS-SCEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc--EEEEEecCCceEEEEECCCC-CeEEEEcc
Confidence 446789999999997 89999 899999999997532111 11233688999999999974 68899999
Q ss_pred CCeEEEEeCCC----Ceeeeeee-ecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccc------eeee----ecccce
Q 022716 88 DKTVRLWDARS----GKCSQQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFK------PIHR----RKFGYE 151 (293)
Q Consensus 88 d~~i~vwd~~~----~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~------~~~~----~~~~~~ 151 (293)
|+.|++||+.. .+....+. +...+.+++|+|+ ++++++++.|+.|++||+++.. .... ..+...
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 99999999987 23444433 4566789999998 8999999999999999998765 2222 234567
Q ss_pred eeeeEEecC-CCEEEEec---------------------C------CCCEEEEEECCCC-CEEEEecCCC---cEEEEeC
Q 022716 152 VNEIAWNMT-GEMFFLTT---------------------G------NAGCYCIAIDPMG-RYFAVGSADS---LVSLWDI 199 (293)
Q Consensus 152 ~~~v~~~~~-~~~~~~~~---------------------~------~~~~~~~~~~~~~-~~l~~gs~d~---~i~iwd~ 199 (293)
+..+.|++. +..+.... + ...+.+++|+|++ .++++++.|+ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 888899887 44433222 1 3458899999997 6899999999 9999999
Q ss_pred CCC-EEEEEee-ccCCCeeEEEEcc-CCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCC-CeEEEEEcC
Q 022716 200 SEM-LCVRTFT-KLEWPVRTISFSH-TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKY-NLLAYAGDD 274 (293)
Q Consensus 200 ~~~-~~~~~~~-~~~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~-~~la~~~~d 274 (293)
+++ ..+..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+. +...|.+++|+|++ .+|++++.|
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD 327 (416)
T ss_dssp TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC
Confidence 875 5566677 8999999999999 99999999999999999999999888775 45689999999999 899999987
Q ss_pred CCCCCCCcceEEEEeeec
Q 022716 275 KNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ 292 (293)
+.++||+++.
T Consensus 328 --------~~i~iw~~~~ 337 (416)
T 2pm9_A 328 --------NKIEVQTLQN 337 (416)
T ss_dssp --------SEEEEEESCC
T ss_pred --------CcEEEEEccC
Confidence 4677777653
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.6e-33 Score=272.82 Aligned_cols=227 Identities=20% Similarity=0.296 Sum_probs=192.6
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCCe
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKT 90 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~~ 90 (293)
....+.+|...|.+++|+|+|++|++|+.||+|++||+... .....+.+|...|.++.|+|.+ ..++++|+.|+.
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG----KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC----ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 34667899999999999999999999999999999999753 1234577999999999999853 458899999999
Q ss_pred EEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc--------------cceeeee
Q 022716 91 VRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--------------GYEVNEI 155 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--------------~~~~~~v 155 (293)
|++||+.++++...+. +.+.+.+++|+|+++.+++++.|+.+++||+++......... ...+..+
T Consensus 725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 9999999998877665 455677899999999999999999999999987765444321 1246677
Q ss_pred EEecCCCEEEEe---------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC
Q 022716 156 AWNMTGEMFFLT---------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP 214 (293)
Q Consensus 156 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~ 214 (293)
.|++++..+... .+...+.+++++|+++++++++.|+.|++||+.++..+..+.+|..+
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~ 884 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW 884 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence 788877765543 33456788999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 215 VRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 215 v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
|.+++|+|+|++|++++.|+.|++|+..
T Consensus 885 v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 9999999999999999999999999854
No 68
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=237.72 Aligned_cols=231 Identities=20% Similarity=0.315 Sum_probs=181.9
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
.+|...|.+++|+|+|++|++|+.|++|++|++.... ......+.+|...|.+++|+|+ +.+|++|+.|+.|++||+
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~--~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~ 134 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEV 134 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC---EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEE
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC--eEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEEC
Confidence 6899999999999999999999999999999986432 1223467899999999999997 578999999999999999
Q ss_pred CCCee---eeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee--ee-ecccceeeeeEEecCCCEEEEec-
Q 022716 97 RSGKC---SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--HR-RKFGYEVNEIAWNMTGEMFFLTT- 168 (293)
Q Consensus 97 ~~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~--~~-~~~~~~~~~v~~~~~~~~~~~~~- 168 (293)
+.+.. ...+. +...+.+++|+|++++|++++.|+++++||++..... .. ..+...+..+.|+|.+..+...+
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 87642 23333 3456778999999999999999999999999876432 22 23556789999999887655332
Q ss_pred ------------------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE---------
Q 022716 169 ------------------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML--------- 203 (293)
Q Consensus 169 ------------------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--------- 203 (293)
+...+.+++++|++..|++++.|+.|++|+.....
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 23457789999999999999999999999976431
Q ss_pred EEEEeeccCCCeeEEEEccCC-CEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716 204 CVRTFTKLEWPVRTISFSHTG-DYIASASEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 204 ~~~~~~~~~~~v~~l~~sp~~-~~l~s~s~d~~i~iw~~~~~~~~~~~ 250 (293)
......+|...|.+++|+|++ .+||+|+.|+.|++|+..+++.+..+
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 122345788999999999998 49999999999999999887765443
No 69
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.9e-33 Score=232.01 Aligned_cols=222 Identities=17% Similarity=0.230 Sum_probs=186.0
Q ss_pred EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVR 138 (293)
Q Consensus 60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~ 138 (293)
..+.+|.+.|.+++|+|++ .+|++++.|+.|++||+.++.....+.. ...+.+++|+|+++++++|+.|++|++||++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 3578999999999999974 6899999999999999999988777664 4567789999999999999999999999999
Q ss_pred ccceeeeec-ccceeeeeEEecCCCEEEEec----------------------CCCCEEEEEECC-CCCEEEEecCCCcE
Q 022716 139 KFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT----------------------GNAGCYCIAIDP-MGRYFAVGSADSLV 194 (293)
Q Consensus 139 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~----------------------~~~~~~~~~~~~-~~~~l~~gs~d~~i 194 (293)
+.+...... +...+..+.|+|.+..++..+ +...+.+++|+| ++..|++|+.|++|
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 887765544 556788899988876654332 345678999999 57899999999999
Q ss_pred EEEeCCCCEEEEEee-ccCCCeeEEEEcc--CCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEE
Q 022716 195 SLWDISEMLCVRTFT-KLEWPVRTISFSH--TGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAY 270 (293)
Q Consensus 195 ~iwd~~~~~~~~~~~-~~~~~v~~l~~sp--~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~ 270 (293)
++||+++......+. .+...+..++|+| ++++|++|+.|+.|++||+.+++.+..+. +...|.+++|+|++++|++
T Consensus 166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE
Confidence 999998765444443 4567899999987 77899999999999999999998888775 4568999999999999999
Q ss_pred EEcCCCCCCCCc
Q 022716 271 AGDDKNKYQADE 282 (293)
Q Consensus 271 ~~~d~~~~~~~~ 282 (293)
|+.|+.+++|+.
T Consensus 246 ~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 246 GSEDGTLKIWNS 257 (304)
T ss_dssp EETTSCEEEEET
T ss_pred EcCCCeEEEEEC
Confidence 999976666654
No 70
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-35 Score=251.07 Aligned_cols=222 Identities=18% Similarity=0.270 Sum_probs=165.0
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|...|.+++|+|++++|++|+.||+|++||+.... .......+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i 124 (377)
T 3dwl_C 47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG-TWKQTLVLLRLNRAATFVRWSPN-EDKFAVGSGARVI 124 (377)
T ss_dssp ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEECCCCSSCEEEEECCTT-SSCCEEEESSSCE
T ss_pred EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC-ceeeeeEecccCCceEEEEECCC-CCEEEEEecCCeE
Confidence 345678999999999999999999999999999999997542 01123456789999999999996 4678899999999
Q ss_pred EEEeCCCCee---eeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec---ccceeeeeEEecCCCE
Q 022716 92 RLWDARSGKC---SQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEM 163 (293)
Q Consensus 92 ~vwd~~~~~~---~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~ 163 (293)
++||+++++. ...+. +...+.+++|+|++++|++++.|+.+++||++......... .+.... .+..
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~ 198 (377)
T 3dwl_C 125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP------FNTV 198 (377)
T ss_dssp EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCC------EEEE
T ss_pred EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccc------hhhh
Confidence 9999988762 34443 45678899999999999999999999999986533211100 000000 0011
Q ss_pred EEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE----EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEE
Q 022716 164 FFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC----VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS 239 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw 239 (293)
.....+...+.+++|+|++++|++++.|+.|++||++++.. +..+..|..+|.+++|+|++++|++|+.|+.+ +|
T Consensus 199 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~ 277 (377)
T 3dwl_C 199 CAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LL 277 (377)
T ss_dssp EECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EE
T ss_pred hhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EE
Confidence 11115667799999999999999999999999999988765 67788899999999999999999999888777 55
Q ss_pred EcC
Q 022716 240 NVH 242 (293)
Q Consensus 240 ~~~ 242 (293)
+..
T Consensus 278 ~~~ 280 (377)
T 3dwl_C 278 QGN 280 (377)
T ss_dssp CCC
T ss_pred EeC
Confidence 543
No 71
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=270.48 Aligned_cols=262 Identities=14% Similarity=0.155 Sum_probs=196.4
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeE----------EEeeCCcCCeeEEEEcCCCCCEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----------IELRGHADSVDQLCWDPKHADLIA 83 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~----------~~~~~h~~~i~~~~~~~~~~~~l~ 83 (293)
..+. |...|++++|+|++++|++|+.||+|++||+.... ... ..+.+|...|.+++|+|++...++
T Consensus 93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~---~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ---LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE---EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc---cccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 3443 67899999999999999999999999999997532 111 123679999999999997667899
Q ss_pred EEeCCCeEEEEeCCCCeeeeeeeec-------------------CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceee
Q 022716 84 TASGDKTVRLWDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144 (293)
Q Consensus 84 s~~~d~~i~vwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~ 144 (293)
+|+.|+.| +||++++++...+..+ ..+.+++|+|+|++|++++.|++|++||+++.+++.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999999877666543 457899999999999999999999999998766543
Q ss_pred eec-------------------ccceeeeeEEecC----CCEEEEec---------------------------------
Q 022716 145 RRK-------------------FGYEVNEIAWNMT----GEMFFLTT--------------------------------- 168 (293)
Q Consensus 145 ~~~-------------------~~~~~~~v~~~~~----~~~~~~~~--------------------------------- 168 (293)
... ....+..+.|.+. +..+++..
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 211 0124556666321 00000000
Q ss_pred --------------------------------------------CC----------------------------CCEEEE
Q 022716 169 --------------------------------------------GN----------------------------AGCYCI 176 (293)
Q Consensus 169 --------------------------------------------~~----------------------------~~~~~~ 176 (293)
.+ ..+.++
T Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 00 112222
Q ss_pred ----------------------------------EECCCCCEEEEecCCCcEEEEeCCCCEEE----EE--ee-----cc
Q 022716 177 ----------------------------------AIDPMGRYFAVGSADSLVSLWDISEMLCV----RT--FT-----KL 211 (293)
Q Consensus 177 ----------------------------------~~~~~~~~l~~gs~d~~i~iwd~~~~~~~----~~--~~-----~~ 211 (293)
+|+|++++|++|+.|++|++||+..+... .. +. +|
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 34678899999999999999998765311 11 11 68
Q ss_pred CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC---------------------------------------------E
Q 022716 212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGR---------------------------------------------T 246 (293)
Q Consensus 212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~---------------------------------------------~ 246 (293)
...|.+++|+|+|++||+|+.|++|+||++.+++ .
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 8899999999999999999999999999998663 1
Q ss_pred EEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 247 VHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 247 ~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
+..+. +..+|++|+|||+| +||+|+.|+.+++||
T Consensus 568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 568 STAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp EEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred eEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 33443 56789999999999 999999997555544
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=265.26 Aligned_cols=246 Identities=14% Similarity=0.138 Sum_probs=195.2
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
....||...|++++|+|++++||+|+.||+|++|+.... .......|...|.+++|+| + .+|++++.|+.|++
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~-----~~~~~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-----EVVIKLEDRSAIKEMRFVK-G-IYLVVINAKDTVYV 83 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC-----EEEEECSSCCCEEEEEEET-T-TEEEEEETTCEEEE
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc-----EEEEEcCCCCCEEEEEEcC-C-CEEEEEECcCeEEE
Confidence 344589999999999999999999999999999997532 1122345788999999999 4 58999999999999
Q ss_pred EeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
||++++++...+..++.+.+++|+|+++++++|+.|++|++||+++...... ... . .|... .....+...+
T Consensus 84 Wd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~i~----~-~~~~~---~~~~~h~~~V 154 (902)
T 2oaj_A 84 LSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF-KLD----N-LQKSS---FFPAARLSPI 154 (902)
T ss_dssp EETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE-EEC----C-HHHHH---TCSSSCCCCC
T ss_pred EECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc-eec----c-ccccc---cccccCCCCe
Confidence 9999998888777778889999999999999999999999999987653210 000 0 00000 0012345678
Q ss_pred EEEEECCC-CCEEEEecCCCcEEEEeCCCCEEEEEeecc------------------CCCeeEEEEccCCCEEEEecCCC
Q 022716 174 YCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKL------------------EWPVRTISFSHTGDYIASASEDL 234 (293)
Q Consensus 174 ~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~l~~sp~~~~l~s~s~d~ 234 (293)
.+++|+|+ +..+++|+.|+.| +||+++++.+..+..| ..+|.+++|+|+|++||+|+.|+
T Consensus 155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg 233 (902)
T 2oaj_A 155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN 233 (902)
T ss_dssp CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence 89999996 4789999999999 9999999888887655 46799999999999999999999
Q ss_pred cEEEEEcCCCCEEEEEe-------------------cCCCcceeEEC----CCC-CeEEEEEcCCC
Q 022716 235 FIDISNVHTGRTVHQIP-------------------CRAAMNSVEWN----PKY-NLLAYAGDDKN 276 (293)
Q Consensus 235 ~i~iw~~~~~~~~~~~~-------------------~~~~i~~~~~s----p~~-~~la~~~~d~~ 276 (293)
.|++||+.+++.+.... +..+|++++|+ |++ .+|++|+.|.+
T Consensus 234 ~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 234 SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence 99999999988765311 13368999995 554 56777777653
No 73
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.3e-33 Score=246.06 Aligned_cols=253 Identities=19% Similarity=0.345 Sum_probs=200.8
Q ss_pred eeecCccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCC------CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 14 REYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~------~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
....+|.+.|.+++|+|+ +++|++|+.||.|++|++..... .......+.+|...|.+++|+|.+..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445689999999999998 67899999999999999974200 01223457799999999999998766999999
Q ss_pred CCCeEEEEeCCCCee-------eeee-eecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716 87 GDKTVRLWDARSGKC-------SQQA-ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~-------~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
.||.|++||+..+.. ...+ .+...+.+++|+| ++..+++++.|+.|++||+++.....
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~------------- 268 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK------------- 268 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------------
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------------
Confidence 999999999987422 1122 2345678899999 67889999999999999998753110
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCCC-EEEEecCCC
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGD-YIASASEDL 234 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~ 234 (293)
....+..+...+.+++|+|++. ++++|+.||.|++||+++ ...+..+..|..+|.+++|+|+++ +|++++.|+
T Consensus 269 ----~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 269 ----PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp ----CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred ----ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence 0011234566788999999987 789999999999999987 456778888999999999999995 699999999
Q ss_pred cEEEEEcCC--------------CCEEEEEe-cCCCcceeEECCCCC-eEEEEEcCCCCCCCCcceEEEEeee
Q 022716 235 FIDISNVHT--------------GRTVHQIP-CRAAMNSVEWNPKYN-LLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 235 ~i~iw~~~~--------------~~~~~~~~-~~~~i~~~~~sp~~~-~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.|++||+.. ...+.... +...|++++|+|+++ +|++++.| +.++||+++
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d--------g~i~iw~~~ 409 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED--------NIMQVWQMA 409 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT--------SEEEEEEEC
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC--------CCEEEeEcc
Confidence 999999987 24444443 456799999999998 89999877 578888875
No 74
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.3e-33 Score=235.77 Aligned_cols=254 Identities=10% Similarity=0.129 Sum_probs=186.7
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+.+.+|...|.+++|+|||++|++|+.|+ +++|++++. ... ...+...+..+.+.+....++++++.|+.|+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV----AHI--MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE----EEE--EEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc----cee--eeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 345678999999999999999999998775 789998642 111 1122235777788776544557788899999
Q ss_pred EEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc-ceeeeecc----------------c-ceeee
Q 022716 93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRKF----------------G-YEVNE 154 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~-~~~~~~~~----------------~-~~~~~ 154 (293)
+||..+++++..+.....+.+++++++. ++++ .|+.+++||+++. +.+..... + ..-..
T Consensus 85 iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v 161 (355)
T 3vu4_A 85 IWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQI 161 (355)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCE
T ss_pred EEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEE
Confidence 9999999998888888888899998763 4443 4789999999876 33322210 0 00011
Q ss_pred eEEecCCC------------------EEEEecCCCCEEEEEECCCCCEEEEecCCCc-EEEEeCCCCEEEEEee-c-cCC
Q 022716 155 IAWNMTGE------------------MFFLTTGNAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFT-K-LEW 213 (293)
Q Consensus 155 v~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~-i~iwd~~~~~~~~~~~-~-~~~ 213 (293)
..|+.... ...+..+...+.+++|+|++++|++|+.|++ |++||+++++++.++. + |..
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~ 241 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence 23444321 3456677888999999999999999999998 9999999999999998 5 899
Q ss_pred CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE--EE--------------------Ee--cCCCcceeEECCCCCeEE
Q 022716 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTV--HQ--------------------IP--CRAAMNSVEWNPKYNLLA 269 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~--~~--------------------~~--~~~~i~~~~~sp~~~~la 269 (293)
+|.+++|+|++++|++++.|+.|++||+..+... .. +. ...+...++|+|++++++
T Consensus 242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~ 321 (355)
T 3vu4_A 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV 321 (355)
T ss_dssp CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence 9999999999999999999999999999765321 11 11 012246799999999999
Q ss_pred EEEcCCC
Q 022716 270 YAGDDKN 276 (293)
Q Consensus 270 ~~~~d~~ 276 (293)
+++.|+.
T Consensus 322 ~~~~dg~ 328 (355)
T 3vu4_A 322 VWPHTRM 328 (355)
T ss_dssp EETTTTE
T ss_pred EEeCCCe
Confidence 9998753
No 75
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.1e-34 Score=248.14 Aligned_cols=257 Identities=13% Similarity=0.080 Sum_probs=166.7
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee-EEEeeCCcCCeeEEEEcCC-------CCCEEEEEeCCCe
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPK-------HADLIATASGDKT 90 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~-------~~~~l~s~~~d~~ 90 (293)
|...+....+++++.+|++|+.|++|++||+......... ...+.+|.+.|++++|+|. ++++|+||+.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 3334444445556778999999999999998753211111 1135789999999999872 3568999999999
Q ss_pred EEEEeCCCCeeee-eeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccceeeeecc-c--ceeeeeEEe--cCCCE
Q 022716 91 VRLWDARSGKCSQ-QAELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKPIHRRKF-G--YEVNEIAWN--MTGEM 163 (293)
Q Consensus 91 i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~-~--~~~~~v~~~--~~~~~ 163 (293)
|+|||+.++.+.. ...++..+.+++|+|++. +|++++.|++|++||+++.+....... . .....+.+. +....
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9999998776544 455778889999999875 799999999999999987654433221 1 111111111 12222
Q ss_pred EEEecCCCCEEEEEEC-CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEE------------------Ecc--
Q 022716 164 FFLTTGNAGCYCIAID-PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS------------------FSH-- 222 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~-~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~------------------~sp-- 222 (293)
.....+...+.++.+. |+++.+++++.|+++++||+..+.....+..+...+..+. |+|
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCC
Confidence 2334455667788775 8999999999999999999987766555555544443333 333
Q ss_pred CCCEEEEecCCCcEEEEEcCCCCEEEE-EecCCCcceeEECCCCCeEEEEEcCC
Q 022716 223 TGDYIASASEDLFIDISNVHTGRTVHQ-IPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 223 ~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
++.++++|+.|+.|++||..+++.+.. ..+..+|++++|||+|++||+++.++
T Consensus 328 ~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 328 MDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp TTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 345778899999999999999876554 56678999999999999999999764
No 76
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-32 Score=268.06 Aligned_cols=262 Identities=19% Similarity=0.236 Sum_probs=217.1
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
...+.+|.+.|++++|+|+|++|++|+.||+|++||+.... ....+.+|...|.+++|+|+ +.+|++++.|+.|+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~----~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVK 682 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC----EEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEE
Confidence 34567999999999999999999999999999999997532 33457799999999999997 46899999999999
Q ss_pred EEeCCCCeeeeeeee-cCceEEEEEcC--CCCEEEEEeCCCeEEEEEccccceeeee-cccceeeeeEEecCCCEEEEec
Q 022716 93 LWDARSGKCSQQAEL-SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 93 vwd~~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
+||+.++++...+.. ...+.+++|+| ++..+++++.|+.+++||+++....... .+...+..+.|+|.+..+...+
T Consensus 683 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 762 (1249)
T 3sfz_A 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS 762 (1249)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence 999999988877654 45677899999 5568999999999999999988766554 3556788888888877665544
Q ss_pred CCC----------------------------------CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee-ccCC
Q 022716 169 GNA----------------------------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT-KLEW 213 (293)
Q Consensus 169 ~~~----------------------------------~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~-~~~~ 213 (293)
.++ .+.+++|+|+++.+++++ ++.+.+||+.++..+..+. +|..
T Consensus 763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHS 841 (1249)
T ss_dssp SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSS
T ss_pred CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCC
Confidence 332 244567888888888877 6789999988877766655 7888
Q ss_pred CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
.|.+++|+|+++++++++.|+.|++|+..++..+..+. +...|.+++|+|++++|++++.|+.+++|
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEE
Confidence 99999999999999999999999999999998877765 45679999999999999999988644443
No 77
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=247.64 Aligned_cols=252 Identities=15% Similarity=0.272 Sum_probs=188.7
Q ss_pred ceeecCcc------------ccEEEEEECCCC--CeEEEEeCCCcEEEeecCCCCCC-----------------------
Q 022716 13 SREYTGHK------------KKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHG----------------------- 55 (293)
Q Consensus 13 ~~~~~~h~------------~~v~~l~~s~~~--~~l~s~~~dg~v~iw~~~~~~~~----------------------- 55 (293)
...+.+|. ..|.+++|+|++ ..|++++.||+|++|++......
T Consensus 74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (447)
T 3dw8_B 74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR 153 (447)
T ss_dssp EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence 45678998 889999999998 79999999999999998631100
Q ss_pred -------------ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC-Ceeeeee--------eecCceEE
Q 022716 56 -------------KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-GKCSQQA--------ELSGENIN 113 (293)
Q Consensus 56 -------------~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~--------~~~~~~~~ 113 (293)
........+|...|.+++|+|+ +.+|++| .|+.|++||+++ +++...+ .+...+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231 (447)
T ss_dssp CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred eccccchheeeeccceEEeccCCCcceEEEEEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence 0000113679999999999996 5688888 899999999984 3333322 23456789
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEEccccce----eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe
Q 022716 114 ITYKPDG-THIAVGNRDDELTILDVRKFKP----IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG 188 (293)
Q Consensus 114 ~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 188 (293)
++|+|++ +.+++++.|+.|++||+++... ........... ....+..+...+.+++|+|++++|+++
T Consensus 232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~s~~g~~l~~~ 303 (447)
T 3dw8_B 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS--------NRSFFSEIISSISDVKFSHSGRYMMTR 303 (447)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-------------CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred EEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc--------ccccccccCceEEEEEECCCCCEEEEe
Confidence 9999998 9999999999999999987654 12111100000 000001112378899999999999999
Q ss_pred cCCCcEEEEeCCC-CEEEEEeeccCCC---------------eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE--
Q 022716 189 SADSLVSLWDISE-MLCVRTFTKLEWP---------------VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-- 250 (293)
Q Consensus 189 s~d~~i~iwd~~~-~~~~~~~~~~~~~---------------v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~-- 250 (293)
+. +.|++||++. +.++..+..|... +..++|+|++++|++|+.|+.|++||+.+++.+...
T Consensus 304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 382 (447)
T 3dw8_B 304 DY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEAS 382 (447)
T ss_dssp ES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECC
T ss_pred eC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeec
Confidence 99 9999999986 7777777777532 334999999999999999999999999998876422
Q ss_pred -------------------------------ecCCCcceeEECCCCCeEEEEEcCC
Q 022716 251 -------------------------------PCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 251 -------------------------------~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.....|..++|||++++||+++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 383 RENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp STTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred ccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 1234577899999999999998764
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-34 Score=247.94 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=189.4
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCcee---------EEEeeC--CcCCeeEEE--EcCCCCCEEEE
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK---------DIELRG--HADSVDQLC--WDPKHADLIAT 84 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~---------~~~~~~--h~~~i~~~~--~~~~~~~~l~s 84 (293)
+|...|.+++|+|++++|++|+.||+|++||++....+... .+.+.. +...+.++. ++++ +.+|++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ 187 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVA 187 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEE
Confidence 69999999999999999999999999999998521011111 111111 445566665 3454 568999
Q ss_pred EeCCCeEEEEeCCCCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716 85 ASGDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (293)
++.|+.|++||++++++...+.. ...+.+++|+|++++|++++.|+.|++||++...++.....
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------- 254 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF------------- 254 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-------------
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-------------
Confidence 99999999999999988877764 56788999999999999999999999999998776654322
Q ss_pred CEEEEecCCCCEEEEE----ECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--------------------------
Q 022716 162 EMFFLTTGNAGCYCIA----IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------------------------- 211 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~----~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-------------------------- 211 (293)
.+...+.+++ ++|++.+|++|+.|+.|++||++++.++..+.+|
T Consensus 255 ------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (437)
T 3gre_A 255 ------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS 328 (437)
T ss_dssp ------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS
T ss_pred ------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc
Confidence 1223345563 4467889999999999999999999888877644
Q ss_pred CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe--------------------------------------cC
Q 022716 212 EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP--------------------------------------CR 253 (293)
Q Consensus 212 ~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~--------------------------------------~~ 253 (293)
..+|.+++|+ ++++|++|+.|+.|++||+.+++.+..+. +.
T Consensus 329 ~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 407 (437)
T 3gre_A 329 LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHH 407 (437)
T ss_dssp GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------C
T ss_pred CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccc
Confidence 3457888888 77999999999999999999887554443 56
Q ss_pred CCcceeEECCC--CCeEEEEEcCCCCCCCCcceEEEEe
Q 022716 254 AAMNSVEWNPK--YNLLAYAGDDKNKYQADEGVFRIYG 289 (293)
Q Consensus 254 ~~i~~~~~sp~--~~~la~~~~d~~~~~~~~~~~~~~~ 289 (293)
..|++++|+++ +.+|++|+.| |.+|||+
T Consensus 408 ~~I~~i~~~~~~~~~~l~s~~~d--------G~I~iw~ 437 (437)
T 3gre_A 408 DIINSISTCEVDETPLLVACDNS--------GLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEESSSSEEEEEEETT--------SCEEEEC
T ss_pred cceeeEeeeccCCceEEEEEcCC--------ceEEEeC
Confidence 78999999998 7799999988 5667764
No 79
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7e-32 Score=224.96 Aligned_cols=226 Identities=24% Similarity=0.369 Sum_probs=189.6
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|...|.+++|+|++++|++|+.||.|++||+.... ....+.+|...|.++.|+|+ +.+|++++.|+.|
T Consensus 57 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i 131 (312)
T 4ery_A 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK----CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESV 131 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSS-SSEEEEEETTSCE
T ss_pred cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCC-CCEEEEEeCCCcE
Confidence 345678999999999999999999999999999999997532 23457789999999999997 4689999999999
Q ss_pred EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec--ccceeeeeEEecCCCEEEEec
Q 022716 92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~ 168 (293)
++||++++++...+.. ...+.+++|+|+++++++++.|+.+++||+++.+...... ....+..+.|+|.+..+....
T Consensus 132 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 9999999887776654 4567789999999999999999999999999877665543 344678889999888776655
Q ss_pred CCCCE------------------------EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716 169 GNAGC------------------------YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224 (293)
Q Consensus 169 ~~~~~------------------------~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 224 (293)
.+..+ ......+++.++++|+.||.|++||+++++.+..+.+|...|.+++|+|++
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291 (312)
T ss_dssp TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS
T ss_pred CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC
Confidence 43221 122234678899999999999999999999999999999999999999999
Q ss_pred CEEEEec--CCCcEEEEEcC
Q 022716 225 DYIASAS--EDLFIDISNVH 242 (293)
Q Consensus 225 ~~l~s~s--~d~~i~iw~~~ 242 (293)
++|++++ .|+.|++|+..
T Consensus 292 ~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEccCCccEEEecCC
Confidence 9999987 69999999863
No 80
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-32 Score=232.75 Aligned_cols=226 Identities=19% Similarity=0.232 Sum_probs=178.6
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
.+.+.+|...|.+++|+|++.+|++|+.|++|++||+.... ....+.+|...|.+++|+|++ .+|++++.|+.|+
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~----~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~ 143 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT----TYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIK 143 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC----EEEEEECCCSCEEEEEECSST-TEEEEEETTSCEE
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEE
Confidence 45678999999999999999999999999999999997531 234578999999999999974 6899999999999
Q ss_pred EEeCCCCeeeeee---eecCceEEEEEcCCC----------CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716 93 LWDARSGKCSQQA---ELSGENINITYKPDG----------THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM 159 (293)
Q Consensus 93 vwd~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~ 159 (293)
+||+......... .....+.+++|+|++ .++++++.|++|++||.+.........+...+..+.|+|
T Consensus 144 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 144 LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISP 223 (343)
T ss_dssp EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECT
T ss_pred EEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECC
Confidence 9999754332222 234457789999987 789999999999999954432222334566789999999
Q ss_pred CCCEEEEecC---------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE--Eee-------
Q 022716 160 TGEMFFLTTG---------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR--TFT------- 209 (293)
Q Consensus 160 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~--~~~------- 209 (293)
.+..+...+. ...+.+++|+|++.++++| .|+.|++||+.++.... .+.
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 8876654332 2347899999999988765 57789999997654322 332
Q ss_pred ----ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716 210 ----KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244 (293)
Q Consensus 210 ----~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~ 244 (293)
+|...|.+++|+|+|++|++|+.|+.|++|++.++
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 56778999999999999999999999999998654
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-32 Score=237.60 Aligned_cols=244 Identities=15% Similarity=0.178 Sum_probs=192.7
Q ss_pred cEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-
Q 022716 22 KVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG- 99 (293)
Q Consensus 22 ~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~- 99 (293)
....++++|+...+ ++|+.||.|++|++............+.+|...|.+++|+|.+..+|++|+.|+.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34468888877544 4688999999999864321111112367899999999999955689999999999999999887
Q ss_pred ------eeeeeee-ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 100 ------KCSQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 100 ------~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
+....+. +...+.+++|+|++ ..|++++.|+.|++||+++.+...... ...+..
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~~ 177 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------------------PDVHPD 177 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC------------------TTTCCS
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe------------------cCCCCC
Confidence 3344444 45667889999998 699999999999999998766543321 023556
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-eccCCC-eeEEEEccCCCEEEEe---cCCCcEEEEEcCCCCE
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-TKLEWP-VRTISFSHTGDYIASA---SEDLFIDISNVHTGRT 246 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-~~~~~~-v~~l~~sp~~~~l~s~---s~d~~i~iw~~~~~~~ 246 (293)
.+.+++|+|++++|++++.|+.|++||+++++.+..+ ..|... +..++|+|++++|++| +.|+.|++||..+++.
T Consensus 178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 178 TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence 7889999999999999999999999999999988888 677765 8999999999999999 8999999999988654
Q ss_pred ---EEEEecCCCcceeEECCCCCeEEEEE-cCCCCCCCCcceEEEEeee
Q 022716 247 ---VHQIPCRAAMNSVEWNPKYNLLAYAG-DDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 247 ---~~~~~~~~~i~~~~~sp~~~~la~~~-~d~~~~~~~~~~~~~~~~~ 291 (293)
...+.+...+.+++|+|++++|++++ .|+ .++||+++
T Consensus 258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg--------~i~i~d~~ 298 (402)
T 2aq5_A 258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS--------SIRYFEIT 298 (402)
T ss_dssp CSEEEECCCCSSCEEEEEETTTTEEEEEETTCS--------CEEEEEEC
T ss_pred CceEEeccCCCceeEEEEcCCCCEEEEEEcCCC--------eEEEEEec
Confidence 33445667899999999999997666 464 55566554
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.3e-31 Score=232.54 Aligned_cols=260 Identities=20% Similarity=0.333 Sum_probs=209.4
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|...|.+++|+ ++.|++|+.||+|++||+... .....+.+|...|.++.+++ ..+++|+.|+.|
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i 221 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG----ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATL 221 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEET---TEEEEEETTSEE
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC----cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEE
Confidence 346678999999999997 679999999999999999753 23345778999999999963 579999999999
Q ss_pred EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEEEec-
Q 022716 92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT- 168 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~- 168 (293)
++||+.++++...+.. ...+.++.+ +++.+++++.|+.+++||+++.++..... +...+..+.| .+..+...+
T Consensus 222 ~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 297 (445)
T 2ovr_B 222 RVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL 297 (445)
T ss_dssp EEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET
T ss_pred EEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC
Confidence 9999999888776654 445667777 78899999999999999999887766554 3445666666 333333222
Q ss_pred --------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec---cCCCeeEEEEccCCC
Q 022716 169 --------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPVRTISFSHTGD 225 (293)
Q Consensus 169 --------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~ 225 (293)
+...+.++.+ +++++++|+.||.|++||+++++.+..+.. |..+|.+++|+ ++
T Consensus 298 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 373 (445)
T 2ovr_B 298 DTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN 373 (445)
T ss_dssp TSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS
T ss_pred CCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC
Confidence 2233444444 678999999999999999999988888876 77899999995 68
Q ss_pred EEEEecCCCcEEEEEcCCCCEEEEE------ecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 226 YIASASEDLFIDISNVHTGRTVHQI------PCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~~~~~~~~------~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+|++|+.|+.|++||+.+++.+..+ .+...|.+++|+|++.++|+|+.|+.. +..+.||+|+.
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~----~~~l~v~df~~ 442 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE----ETKLLVLDFDV 442 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS----CCEEEEEECCC
T ss_pred EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCC----ccEEEEEECCC
Confidence 9999999999999999999988877 345679999999999999999998752 35689999874
No 83
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=221.05 Aligned_cols=244 Identities=18% Similarity=0.273 Sum_probs=194.0
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
+.+|...|.+++|+|++++|++|+.||+|++|++... .....+.+|...+.++.+.+ .++++++.++.+++|+
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~----~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ----KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHD 135 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc----eeEEEecCccceEEEeecCC---CEEEEEecCCceEeee
Confidence 3478889999999999999999999999999999753 23345778999888877653 5899999999999999
Q ss_pred CCCCeee-eeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 96 ARSGKCS-QQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 96 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
....... .... +...+..+.+.++++++++++.|+.+++||+++.+...... .........+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------~~~~~~~~~v 199 (318)
T 4ggc_A 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----------------QTFTQHQGAV 199 (318)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----------------EEECCCCSCE
T ss_pred cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----------------eeecccCCce
Confidence 8766432 3333 34566788999999999999999999999998754322111 1122344567
Q ss_pred EEEEECCCCCE---EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe--cCCCcEEEEEcCCCCEEE
Q 022716 174 YCIAIDPMGRY---FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA--SEDLFIDISNVHTGRTVH 248 (293)
Q Consensus 174 ~~~~~~~~~~~---l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~--s~d~~i~iw~~~~~~~~~ 248 (293)
.++++.|++.. +++++.+++|++||.+....... ..+...+..+.|+|++..++++ +.|+.|++||+.+++.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~ 278 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 278 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE
Confidence 77888887653 45778899999999988876654 4566789999999999988665 489999999999999998
Q ss_pred EEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 249 QIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 249 ~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.+. |..+|++++|+|++++||+||.| +++|||++.
T Consensus 279 ~l~gH~~~V~~l~~spdg~~l~S~s~D--------~~v~iWd~~ 314 (318)
T 4ggc_A 279 ELKGHTSRVLSLTMSPDGATVASAAAD--------ETLRLWRCF 314 (318)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETT--------TEEEEECCS
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEecC--------CeEEEEECC
Confidence 886 56789999999999999999988 578888864
No 84
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-32 Score=247.57 Aligned_cols=240 Identities=14% Similarity=0.212 Sum_probs=200.4
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC-eeEEEEcC--CCCCEEEEEeCCCeEEE
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDP--KHADLIATASGDKTVRL 93 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~--~~~~~l~s~~~d~~i~v 93 (293)
..|.+.|.+++|+|+|++|++++ |+.|++|++............+.+|... |.+++|+| + +.+|++++.|+.|++
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEE
Confidence 36889999999999999999998 8999999997431111234467899999 99999999 6 468999999999999
Q ss_pred EeCCCC--------eeeeeee-ecCceEEEEEcCCCCEEEEEeCC----CeEEEEEccccceeeeecccceeeeeEEecC
Q 022716 94 WDARSG--------KCSQQAE-LSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 94 wd~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
||+.++ .....+. ....+.+++|+|+++++++++.+ +.+.+||.. ....
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~~~~---------------- 154 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSLG---------------- 154 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEEE----------------
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--Ccce----------------
Confidence 999754 3344443 45677889999999999999987 688888832 2221
Q ss_pred CCEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCC---CeeEEEEccC-CCEEEEecCCCc
Q 022716 161 GEMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEW---PVRTISFSHT-GDYIASASEDLF 235 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~---~v~~l~~sp~-~~~l~s~s~d~~ 235 (293)
.+..+...+.+++|+|+++ .+++++.|+.|++||+++++.+..+..|.. +|.+++|+|+ +++|++++.|+.
T Consensus 155 ----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 155 ----EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp ----ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred ----eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 1224566788999999998 899999999999999999999999999998 9999999999 999999999999
Q ss_pred EEEEEcCCCCEEEEE-----ecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 236 IDISNVHTGRTVHQI-----PCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 236 i~iw~~~~~~~~~~~-----~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
|++||+.+++.+..+ .+..+|.+++|+ ++++|++++.|+.+++|+
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd 280 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWD 280 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEE
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEE
Confidence 999999999998888 667789999999 999999999886444443
No 85
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.7e-32 Score=232.63 Aligned_cols=239 Identities=17% Similarity=0.299 Sum_probs=192.9
Q ss_pred Ccccc--EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 18 GHKKK--VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 18 ~h~~~--v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
+|... +.++.|++ ..+++++.||.|++|++... .........|...|.+++|+|+ +.+|++|+.||.|++||
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~---~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSG---SVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTC---CEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCC---cEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEE
Confidence 66654 44466664 56889999999999999753 2222223348899999999996 57899999999999999
Q ss_pred CCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
+.+++....+. +...+.+++| ++..+++++.|+.+++||++..... ...+..+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-------------------~~~~~~~~~~v~ 221 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ-------------------IGTLQGHSSEVC 221 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE-------------------EEEEECCSSCEE
T ss_pred CcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce-------------------eeEEcCCCCCee
Confidence 99988777665 4456677888 4679999999999999999843211 112334567788
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec--CCCcEEEEEcCCCCEEEEEe
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS--EDLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s--~d~~i~iw~~~~~~~~~~~~ 251 (293)
+++++|++++|++|+.|+.|++||++++..+..+..|..+|.+++|+|++. ++++|+ .|+.|++||+.+++.+..+.
T Consensus 222 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~ 301 (401)
T 4aez_A 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD 301 (401)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 999999999999999999999999999988888989999999999999764 566655 79999999999999999888
Q ss_pred cCCCcceeEECCCCCeEEEEE--cCCCCCCCCcceEEEEeee
Q 022716 252 CRAAMNSVEWNPKYNLLAYAG--DDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 252 ~~~~i~~~~~sp~~~~la~~~--~d~~~~~~~~~~~~~~~~~ 291 (293)
+...+.+++|+|++++|++++ .| +.++||+++
T Consensus 302 ~~~~v~~~~~s~~~~~l~~~~g~~d--------g~i~v~~~~ 335 (401)
T 4aez_A 302 AGSQVTSLIWSPHSKEIMSTHGFPD--------NNLSIWSYS 335 (401)
T ss_dssp CSSCEEEEEECSSSSEEEEEECTTT--------CEEEEEEEE
T ss_pred CCCcEEEEEECCCCCeEEEEeecCC--------CcEEEEecC
Confidence 888999999999999999965 55 456666654
No 86
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-32 Score=226.52 Aligned_cols=224 Identities=19% Similarity=0.277 Sum_probs=165.0
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCC---CceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~---~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
+|...|.+++|+|++++|++|+.|++|++|++..... .......+.+|...|.+++|+|+ +.+|++|+.|+.|++|
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las~s~D~~v~iw 134 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLATCSRDKSVWIW 134 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT-SCEEEEEETTSCEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEEEeCCCEEEEE
Confidence 3999999999999999999999999999999853211 11223457799999999999997 5789999999999999
Q ss_pred eCCCC----eeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccc--ceeeee-cccceeeeeEEecC--CCEE
Q 022716 95 DARSG----KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRR-KFGYEVNEIAWNMT--GEMF 164 (293)
Q Consensus 95 d~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~--~~~~~~-~~~~~~~~v~~~~~--~~~~ 164 (293)
|++.. ++...+. +...+.+++|+|++.+|++++.|++|++||++.. .++... .+...+..+.|++. +..+
T Consensus 135 d~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 214 (330)
T 2hes_X 135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214 (330)
T ss_dssp ECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred eccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence 99432 3344443 3456788999999999999999999999998764 333332 24556777777776 3222
Q ss_pred EEe------------------------------cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE--EEEE-eecc
Q 022716 165 FLT------------------------------TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML--CVRT-FTKL 211 (293)
Q Consensus 165 ~~~------------------------------~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~-~~~~ 211 (293)
... .+...+.+++|++++ .|++++.||.|++||..++. .... ...|
T Consensus 215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h 293 (330)
T 2hes_X 215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH 293 (330)
T ss_dssp EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence 211 144568889999655 78999999999999988763 2322 3567
Q ss_pred CC-CeeEEEEcc--CCCEEEEecCCCcEEEEEcCC
Q 022716 212 EW-PVRTISFSH--TGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 212 ~~-~v~~l~~sp--~~~~l~s~s~d~~i~iw~~~~ 243 (293)
.. .|.+++|+| ++++||+|+.|+.|++|++.+
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 76 899999999 789999999999999999864
No 87
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.5e-33 Score=237.77 Aligned_cols=218 Identities=24% Similarity=0.334 Sum_probs=175.5
Q ss_pred ceeecCccccEEEEEECCCC-CeEEEEeCCCcEEEeecCCCCCCceeEE---EeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDI---ELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
.+.+.+|.+.|.+++|+|++ ..|++|+.|++|++||+.... ..... ...+|...|.++.+++.+..+|++|+.|
T Consensus 150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D 227 (380)
T 3iz6_a 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227 (380)
T ss_dssp CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC--EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc--EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence 35678999999999999975 579999999999999997532 11111 0157999999999988667899999999
Q ss_pred CeEEEEeCCC-Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 89 KTVRLWDARS-GKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 89 ~~i~vwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
+.|++||++. +++...+. +.+.+.+++|+|++++|++++.|+++++||+++...+..........
T Consensus 228 ~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~------------- 294 (380)
T 3iz6_a 228 TTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN------------- 294 (380)
T ss_dssp SCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS-------------
T ss_pred CeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc-------------
Confidence 9999999974 34444444 45667899999999999999999999999999876554432110000
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe----eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF----TKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~----~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
......+.+++|+|+++++++|+.||.|++||+..++.+..+ .+|..+|.+++|+|+|++|++|+.|+.|++|++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 011123678999999999999999999999999988877766 5788999999999999999999999999999987
Q ss_pred CCC
Q 022716 243 TGR 245 (293)
Q Consensus 243 ~~~ 245 (293)
..+
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 88
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-31 Score=224.48 Aligned_cols=234 Identities=19% Similarity=0.272 Sum_probs=202.0
Q ss_pred eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 022716 57 VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTIL 135 (293)
Q Consensus 57 ~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~ 135 (293)
.....+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+++....+. +...+.+++|+|++++|++++.|+.|++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 345678899999999999996 5689999999999999999988877766 45667899999999999999999999999
Q ss_pred EccccceeeeecccceeeeeEEecCCCEEEEecCC---------------------------------------CCEEEE
Q 022716 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---------------------------------------AGCYCI 176 (293)
Q Consensus 136 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---------------------------------------~~~~~~ 176 (293)
|+++.+..........+..+.|++.+..+.....+ ..+.++
T Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 102 DVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred ECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99998888887788889999999988876654432 168889
Q ss_pred EECCCCCEEEEecCCCcEEEEeCCC-CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716 177 AIDPMGRYFAVGSADSLVSLWDISE-MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA 255 (293)
Q Consensus 177 ~~~~~~~~l~~gs~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~ 255 (293)
+++|+++++++++.||.|++||+++ ...+..+..|..+|.+++|+|++++|++++.|+.|++||+.+++.+..+....+
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 261 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCP 261 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCC
Confidence 9999999999999999999999998 788888999999999999999999999999999999999999999988888889
Q ss_pred cceeEECCCCCeEEEEEcCCCCCCCCc------ceEEEEeee
Q 022716 256 MNSVEWNPKYNLLAYAGDDKNKYQADE------GVFRIYGFE 291 (293)
Q Consensus 256 i~~~~~sp~~~~la~~~~d~~~~~~~~------~~~~~~~~~ 291 (293)
+..++|+|++.++++++.++...++.. ..+++|+++
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 999999999999999998875443221 257777754
No 89
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=237.38 Aligned_cols=228 Identities=9% Similarity=0.079 Sum_probs=174.2
Q ss_pred EECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC---------
Q 022716 27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR--------- 97 (293)
Q Consensus 27 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~--------- 97 (293)
.+.++++.|++|+.||+|++||+.... .... +. ...|.++.++|. +++++.|+.|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~--~~~~--~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSK--TITT--IT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSS--CEEE--EE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCc--EEEE--Ee--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecC
Confidence 445688899999999999999997542 2222 22 456777778775 8899999999999765
Q ss_pred CCeeeeeee--ecCceEEEEEcC--CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 98 SGKCSQQAE--LSGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 98 ~~~~~~~~~--~~~~~~~~~~~~--~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
+++...... ..+.+.+++++| +++++++++.|+++++||+++.+...... ..+...+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-------------------~~~~~~i 173 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-------------------AKSDVEY 173 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-------------------CCSSCCC
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-------------------cCCCCce
Confidence 333333332 235688999999 99999999999999999998766533211 1123357
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEeCCCCEEE-EEeec-cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716 174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCV-RTFTK-LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~-~~~~~-~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 251 (293)
.+++|+|++.++++|+.||.|++||++++..+ ..+.. |..+|.+++|+|++.+|++++.| .|++||+.+++.++.+.
T Consensus 174 ~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 174 SSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp CEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSC
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeec
Confidence 78999999999999999999999999988766 67777 99999999999999999999955 99999999886554332
Q ss_pred ----cCCCcc--eeEECCCCCeEEEEEc-CCCCCCCCcceEEEEeeec
Q 022716 252 ----CRAAMN--SVEWNPKYNLLAYAGD-DKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 252 ----~~~~i~--~~~~sp~~~~la~~~~-d~~~~~~~~~~~~~~~~~~ 292 (293)
+..++. +++|+|++++|++++. | +.++||++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d--------~~i~v~~~~~ 292 (343)
T 3lrv_A 253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNES--------NSLTIYKFDK 292 (343)
T ss_dssp CCBC-----CCEEEEECTTSSEEEEEETTT--------TEEEEEEECT
T ss_pred ccccccccccceEEEECCCCCEEEEecCCC--------CcEEEEEEcc
Confidence 112344 5999999999999987 5 4577777753
No 90
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-31 Score=232.07 Aligned_cols=235 Identities=13% Similarity=0.070 Sum_probs=186.4
Q ss_pred ecCccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
..+|.+.|.+++|+|++++| ++|+.||.|++||+..........+....|...|.+++|+|++ .+|++++.|+.+++|
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSI 176 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEE
Confidence 34677899999999999996 8999999999999972111233333334677899999999974 688999999999999
Q ss_pred eCCCCeeee----eee-ecCceEEEEEcCC---CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 95 DARSGKCSQ----QAE-LSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 95 d~~~~~~~~----~~~-~~~~~~~~~~~~~---~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
++.++.... .+. +...+.+++|+|+ +++|++++.|+.|++||+++....... .
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-------------------~ 237 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW-------------------L 237 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE-------------------C
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee-------------------e
Confidence 998776442 333 4567788999999 999999999999999999876543321 2
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-------------------------cCCCeeEEEEc
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-------------------------LEWPVRTISFS 221 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-------------------------~~~~v~~l~~s 221 (293)
..+...+.+++|+ ++++|++|+.|++|++||+++++++..+.. ....|..++|+
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 2355678899999 999999999999999999999988877752 23578999999
Q ss_pred cCCCEEEEec-CCCcEEEEEc--CCC---CEEEEEecCCCcceeEECCCCCeEEEEE
Q 022716 222 HTGDYIASAS-EDLFIDISNV--HTG---RTVHQIPCRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 222 p~~~~l~s~s-~d~~i~iw~~--~~~---~~~~~~~~~~~i~~~~~sp~~~~la~~~ 272 (293)
|++++|++++ .|+.|++|++ .++ +.+..+.....+.+++|+|++ ++++.+
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~~ 372 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTLD 372 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEEC
T ss_pred CCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEEe
Confidence 9999999998 8999999999 555 445566666889999999954 444443
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-31 Score=222.33 Aligned_cols=214 Identities=20% Similarity=0.215 Sum_probs=168.0
Q ss_pred cceeecCccccEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCC
Q 022716 12 HSREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGD 88 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d 88 (293)
....+.+|.++|.+++|+|+ +++|+||+.||+|++||+...... ....+.+|...|.+++|+|+. +.+|++++.|
T Consensus 45 ~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~--~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d 122 (297)
T 2pm7_B 45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS--QIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC--CCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE--EEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence 34678899999999999864 899999999999999999753211 223467899999999999963 4689999999
Q ss_pred CeEEEEeCCCCeee--eee-eecCceEEEEEcCC-------------CCEEEEEeCCCeEEEEEccccceeeeeccccee
Q 022716 89 KTVRLWDARSGKCS--QQA-ELSGENINITYKPD-------------GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152 (293)
Q Consensus 89 ~~i~vwd~~~~~~~--~~~-~~~~~~~~~~~~~~-------------~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~ 152 (293)
+.|++||++++... ..+ .+...+.+++|+|+ ++.|++|+.|++|++||+++.......
T Consensus 123 ~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~------ 196 (297)
T 2pm7_B 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------ 196 (297)
T ss_dssp SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE------
T ss_pred CcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE------
Confidence 99999999876321 222 23456778999987 579999999999999998764321100
Q ss_pred eeeEEecCCCEEEEecCCCCEEEEEECCCC---CEEEEecCCCcEEEEeCCCCE---EEEEe--eccCCCeeEEEEccCC
Q 022716 153 NEIAWNMTGEMFFLTTGNAGCYCIAIDPMG---RYFAVGSADSLVSLWDISEML---CVRTF--TKLEWPVRTISFSHTG 224 (293)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~gs~d~~i~iwd~~~~~---~~~~~--~~~~~~v~~l~~sp~~ 224 (293)
...+..+...+.+++|+|++ .+|++|+.|++|++||++... ....+ ..|...|.+++|+|+|
T Consensus 197 ----------~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 266 (297)
T 2pm7_B 197 ----------ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG 266 (297)
T ss_dssp ----------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS
T ss_pred ----------EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC
Confidence 01233566788999999984 899999999999999987631 22233 4677899999999999
Q ss_pred CEEEEecCCCcEEEEEcCC
Q 022716 225 DYIASASEDLFIDISNVHT 243 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw~~~~ 243 (293)
++||+++.|+.|++|+...
T Consensus 267 ~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 267 NVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CCEEEEETTSCEEEEEECT
T ss_pred CEEEEEcCCCcEEEEEECC
Confidence 9999999999999999763
No 92
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.5e-31 Score=220.25 Aligned_cols=219 Identities=19% Similarity=0.262 Sum_probs=173.1
Q ss_pred EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-----eeeee-ecCceEEEEEcCCCCEEEEEeCCCeEE
Q 022716 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-----SQQAE-LSGENINITYKPDGTHIAVGNRDDELT 133 (293)
Q Consensus 60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~ 133 (293)
..|+||.+.|++++|+|+++++|+||+.|++|++||+.+.+. ...+. +...+.+++|+|+++++++++.|+.++
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 358899999999999998778999999999999999876542 22232 345678899999999999999999999
Q ss_pred EEEccccceeeeec-ccceeeeeEEecCCCEEEEe----------------------cCCCCEEEEEECCCC--CEEEEe
Q 022716 134 ILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT----------------------TGNAGCYCIAIDPMG--RYFAVG 188 (293)
Q Consensus 134 l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~--~~l~~g 188 (293)
+|+........... ....+....+.+.+..++.. .+...+.++++++++ .+++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE
Confidence 99987765443332 22223333344333322221 223457788887764 678999
Q ss_pred cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeE
Q 022716 189 SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLL 268 (293)
Q Consensus 189 s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~l 268 (293)
+.|+.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.|+.|++||+.+.+.+..+.....+.++.|+|++.++
T Consensus 192 ~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 271 (340)
T 4aow_A 192 GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL 271 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE
T ss_pred cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999988888899999999987555
Q ss_pred EEEEcCCCCCC
Q 022716 269 AYAGDDKNKYQ 279 (293)
Q Consensus 269 a~~~~d~~~~~ 279 (293)
+++.|+.+++
T Consensus 272 -~~~~d~~i~i 281 (340)
T 4aow_A 272 -CAATGPSIKI 281 (340)
T ss_dssp -EEEETTEEEE
T ss_pred -eccCCCEEEE
Confidence 5556654433
No 93
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.1e-32 Score=232.36 Aligned_cols=226 Identities=14% Similarity=0.205 Sum_probs=173.2
Q ss_pred eecCccccEEEEEECCCCCeEEEE-----------eCCCcEEEeecCCCCCCceeEEE------eeCCcCCeeEEEEcCC
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASG-----------SVDQTARVWHIEPHGHGKVKDIE------LRGHADSVDQLCWDPK 77 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~-----------~~dg~v~iw~~~~~~~~~~~~~~------~~~h~~~i~~~~~~~~ 77 (293)
.+.+|...|.+++++ ++.+++| +.|+.+|+|++..... ...... ...+...+..++|+|+
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVND-QLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT-EEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCc-eEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 456788889988765 4455554 5678899999865322 111111 1234556889999998
Q ss_pred CCCE-EEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee---cccceee
Q 022716 78 HADL-IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR---KFGYEVN 153 (293)
Q Consensus 78 ~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~---~~~~~~~ 153 (293)
+..+ +++++.|++|++||+.++++...++.++.+.+++|+|||+++++++.+ .+.+|+..+....... .....+.
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEE
Confidence 6443 235557999999999999998888888889999999999999999855 5566666555443322 2345678
Q ss_pred eeEEecCCCEEEEec-----------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE
Q 022716 154 EIAWNMTGEMFFLTT-----------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 204 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~ 204 (293)
.+.|+|++..+...+ +...+.+++|+|++++||+|+.|++|+|||++++++
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence 888888776544322 234588999999999999999999999999999999
Q ss_pred EEEe-eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716 205 VRTF-TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244 (293)
Q Consensus 205 ~~~~-~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~ 244 (293)
+.++ .+|..+|++|+|||||++|||||.|++|+||++...
T Consensus 304 ~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8875 689999999999999999999999999999998643
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-32 Score=235.62 Aligned_cols=245 Identities=12% Similarity=0.101 Sum_probs=191.1
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-ceeE---------------------------------------
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKD--------------------------------------- 59 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-~~~~--------------------------------------- 59 (293)
..++.+++|+|+|++|+++ .++.|++||+...... ....
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4588999999999965555 6889999998653200 0000
Q ss_pred -------------EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC--CCeeeeeee---ecCceEEEEEcCCCC
Q 022716 60 -------------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAE---LSGENINITYKPDGT 121 (293)
Q Consensus 60 -------------~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~---~~~~~~~~~~~~~~~ 121 (293)
...++|...|.+++|+|++..++++++.|+.|++||+. ++++...+. ....+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 01124555799999999864445899999999999998 777666653 346678999999999
Q ss_pred EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEe
Q 022716 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWD 198 (293)
Q Consensus 122 ~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd 198 (293)
+|++++.++.+.+|++.+........ ..+..+...+.+++|+|+ +++|++|+.|+.|++||
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~----------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd 226 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQ----------------EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISH 226 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCC----------------CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEE
T ss_pred EEEEEeCCCcEEEEecCCcccccccc----------------eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEE
Confidence 99999999999999987655332000 011234567889999999 99999999999999999
Q ss_pred CCCCEEEEE-eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-------------------------
Q 022716 199 ISEMLCVRT-FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC------------------------- 252 (293)
Q Consensus 199 ~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~------------------------- 252 (293)
++++..+.. +.+|..+|.+++|+ ++++|++|+.|+.|++||+.+++.+..+..
T Consensus 227 ~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
T 2vdu_B 227 YPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI 305 (450)
T ss_dssp ESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred CCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence 998877766 55899999999999 999999999999999999999998877652
Q ss_pred -CCCcceeEECCCCCeEEEEE-cCCCCCCCCcceEEEEee
Q 022716 253 -RAAMNSVEWNPKYNLLAYAG-DDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 253 -~~~i~~~~~sp~~~~la~~~-~d~~~~~~~~~~~~~~~~ 290 (293)
...+.+++|+|++++|++++ .| +.++||++
T Consensus 306 ~~~~v~~i~~~~~~~~l~~~~~~d--------~~i~iw~~ 337 (450)
T 2vdu_B 306 IEFAVSKIIKSKNLPFVAFFVEAT--------KCIIILEM 337 (450)
T ss_dssp BCCCEEEEEECSSSSEEEEEETTC--------SEEEEEEE
T ss_pred ceEEEEEEEEeCCCCEEEEEECCC--------CeEEEEEe
Confidence 23578899999999999998 55 45666665
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.1e-31 Score=230.40 Aligned_cols=235 Identities=21% Similarity=0.335 Sum_probs=191.3
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
...+.+|.+.|.+++| +++.|++|+.||+|++||+.... ....+.+|...|.++.|++ ..+++|+.|+.|+
T Consensus 166 ~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~ 236 (435)
T 1p22_A 166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE----MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIA 236 (435)
T ss_dssp EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC----EEEEECCCCSCEEEEECCT---TEEEEEETTSCEE
T ss_pred EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc----EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEE
Confidence 4567899999999998 78899999999999999997532 2345678999999999964 4899999999999
Q ss_pred EEeCCCCeeee---eee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 93 LWDARSGKCSQ---QAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 93 vwd~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
+||+.++.... ... +...+.++++ +++++++++.|+.+++||+++.+..... ..
T Consensus 237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~ 294 (435)
T 1p22_A 237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL--------------------NG 294 (435)
T ss_dssp EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE--------------------EC
T ss_pred EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE--------------------cC
Confidence 99998876542 222 3445667777 7889999999999999999886654432 23
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC---
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR--- 245 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~--- 245 (293)
+...+.++++ +++++++|+.||.|++||++++.++..+.+|..+|.+++| ++.+|++|+.|+.|++||+.++.
T Consensus 295 ~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 370 (435)
T 1p22_A 295 HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370 (435)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 4456677777 4789999999999999999999999999999999999998 78999999999999999997655
Q ss_pred ------EEEEEe-cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 246 ------TVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 246 ------~~~~~~-~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.+..+. +..+|.+++| ++.+|++++.| +.++||++++
T Consensus 371 ~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D--------g~i~iwd~~~ 414 (435)
T 1p22_A 371 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD--------DTILIWDFLN 414 (435)
T ss_dssp SCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS--------SEEEEEC---
T ss_pred ccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC--------CEEEEEECCC
Confidence 566554 5668999999 77899999987 5777887754
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-31 Score=226.89 Aligned_cols=218 Identities=17% Similarity=0.281 Sum_probs=175.9
Q ss_pred ccccEEEEEECCC----CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 19 HKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 19 h~~~v~~l~~s~~----~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
|...|.+++|+|+ +++|++|+.||.|++||+... . ....+.+|...|.+++|+|.++.+|++++.|+.|++|
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---Q-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---C-EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---e-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 6688999999999 678999999999999998753 1 2335678999999999999556899999999999999
Q ss_pred eCCCCeeeeee----eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-----------------------
Q 022716 95 DARSGKCSQQA----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK----------------------- 147 (293)
Q Consensus 95 d~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~----------------------- 147 (293)
|+++++....+ .....+.+++|+|+++++++++.|+.+++||+++.+......
T Consensus 144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 144 NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp ETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred EeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 99998877765 355678899999999999999999999999998765432221
Q ss_pred ------ccceeeeeEEecCCCEEEEec-----------------------------------CCCCEEEEEECCC--CCE
Q 022716 148 ------FGYEVNEIAWNMTGEMFFLTT-----------------------------------GNAGCYCIAIDPM--GRY 184 (293)
Q Consensus 148 ------~~~~~~~v~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~--~~~ 184 (293)
+...+..+.|+ ++.+...+ +...+.+++++|+ +++
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~ 301 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM 301 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE
Confidence 34456666665 33333222 2223556778888 999
Q ss_pred EEEecCCCcEEEEeCCCCE----EEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 185 FAVGSADSLVSLWDISEML----CVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 185 l~~gs~d~~i~iwd~~~~~----~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
|++|+.||.|++||+++++ ....+..| ..+|.+++|+|++++|++++.|+.|++||+.
T Consensus 302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999998763 44567777 6899999999999999999999999999985
No 97
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6e-30 Score=223.60 Aligned_cols=250 Identities=21% Similarity=0.371 Sum_probs=198.6
Q ss_pred ceeecCccccE-EEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 13 SREYTGHKKKV-HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 13 ~~~~~~h~~~v-~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
.+.+.+|.+.| .++. ++|++|++|+.||+|++||+.... ....+.+|...|.++.+++ +++++|+.|+.|
T Consensus 111 ~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i 181 (445)
T 2ovr_B 111 PKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGK----CLRTLVGHTGGVWSSQMRD---NIIISGSTDRTL 181 (445)
T ss_dssp CEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCC----EEEECCCCSSCEEEEEEET---TEEEEEETTSCE
T ss_pred eEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCc----EEEEEcCCCCCEEEEEecC---CEEEEEeCCCeE
Confidence 45678999864 6555 568999999999999999997532 2345779999999999973 589999999999
Q ss_pred EEEeCCCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-ccceeeeeEEecCCCEEE----
Q 022716 92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFF---- 165 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~---- 165 (293)
++||+.++++...+.. ...+.++.++ ++.+++++.|+.+++||+++.+...... +...+..+.|+ +..+.
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 257 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAY 257 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--SSCEEEEET
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--CCEEEEEcC
Confidence 9999999988776653 4456677775 5789999999999999999877665543 34455666552 22222
Q ss_pred -----------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716 166 -----------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 166 -----------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 228 (293)
+..+...+.++++ ++.++++|+.|+.|++||+++++.+..+.+|...+.++.+ ++++++
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 333 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILV 333 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEE
T ss_pred CCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEE
Confidence 2234456778887 7899999999999999999999999999999999988876 567999
Q ss_pred EecCCCcEEEEEcCCCCEEEEEe----cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 229 SASEDLFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 229 s~s~d~~i~iw~~~~~~~~~~~~----~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
+|+.|+.|++||+.+++.+..+. +..+|.+++|+ +++|++|+.|+.+++|+
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 99999999999999999888875 45679999996 57999999886444443
No 98
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.5e-30 Score=227.03 Aligned_cols=252 Identities=21% Similarity=0.286 Sum_probs=195.8
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCe
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKT 90 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~ 90 (293)
....+.+|.+.|.+++|+|++ .|++|+.||+|++||+... .....+.+|...|.++++++. +..++++++.|+.
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG----CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC----cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence 345678999999999999988 9999999999999999753 233457789999999999852 3468999999999
Q ss_pred EEEEeCCCCeeeeee---------------------eecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-
Q 022716 91 VRLWDARSGKCSQQA---------------------ELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK- 147 (293)
Q Consensus 91 i~vwd~~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~- 147 (293)
|++||+.++...... ...++ .....++++++.+++++.|+.+++||+++.++.....
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 308 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 999999876532110 11111 1123447889999999999999999999887776654
Q ss_pred ccceeeeeEEecCCCEEEEecC---------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE
Q 022716 148 FGYEVNEIAWNMTGEMFFLTTG---------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 206 (293)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~ 206 (293)
+...+..+.|++.+..+...+. ...+.+++++ ++++++|+.||+|++||++++....
T Consensus 309 ~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee
Confidence 4567888899888776654443 3456677776 6899999999999999999887655
Q ss_pred EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE--EecCCCcceeEECCCCCeEEEE-EcC
Q 022716 207 TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKYNLLAYA-GDD 274 (293)
Q Consensus 207 ~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~--~~~~~~i~~~~~sp~~~~la~~-~~d 274 (293)
.. .+...+..++|+|++++|++|+ |+.|++||+.+++.++. ..+..+|.+++|+ +..++++ +.|
T Consensus 387 ~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~ 453 (464)
T 3v7d_B 387 SY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKD 453 (464)
T ss_dssp EE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEET
T ss_pred ee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeC
Confidence 54 3566788899999999999999 89999999999998875 3456689999997 4454444 444
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.7e-30 Score=224.41 Aligned_cols=229 Identities=20% Similarity=0.326 Sum_probs=188.9
Q ss_pred cCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
.+|...|.+++| ++++|++|+.||.|++||+.... ....+.+|...|.+++|. +.+|++|+.||.|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC----EEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe----EEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEEC
Confidence 467778999987 78999999999999999987431 234577999999999983 468999999999999999
Q ss_pred CCCeeeeeeee-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 97 RSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
.++++...+.. ...+.+++|+ +..+++++.|+.+++||+++....... .....+...+.+
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~-----------------~~~~~~~~~v~~ 261 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLR-----------------RVLVGHRAAVNV 261 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEE-----------------EEECCCSSCEEE
T ss_pred CCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceee-----------------eEecCCCCcEEE
Confidence 99988776653 4456677776 459999999999999999875533210 122345567778
Q ss_pred EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-cCC
Q 022716 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-CRA 254 (293)
Q Consensus 176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-~~~ 254 (293)
+++ +++++++|+.||.|++||+++++.+..+.+|...|.+++| +++++++|+.|+.|++||+.+++.+..+. +..
T Consensus 262 ~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp EEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence 887 7899999999999999999999999999999999999998 57899999999999999999999888776 456
Q ss_pred CcceeEECCCCCeEEEEEcCCCCCC
Q 022716 255 AMNSVEWNPKYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 255 ~i~~~~~sp~~~~la~~~~d~~~~~ 279 (293)
.|.+++| ++++|++|+.|+.+++
T Consensus 338 ~v~~~~~--~~~~l~sg~~dg~i~v 360 (435)
T 1p22_A 338 LVRCIRF--DNKRIVSGAYDGKIKV 360 (435)
T ss_dssp CEEEEEC--CSSEEEEEETTSCEEE
T ss_pred cEEEEEe--cCCEEEEEeCCCcEEE
Confidence 7999999 7889999998854433
No 100
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-31 Score=233.21 Aligned_cols=236 Identities=11% Similarity=0.082 Sum_probs=179.3
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC-----ceeEE--------------------Eee-CCcCCeeEEE
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----KVKDI--------------------ELR-GHADSVDQLC 73 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~-----~~~~~--------------------~~~-~h~~~i~~~~ 73 (293)
...|.+++|+|||+++|||+.|++|+ |......- ....+ .+. .|.+.|.+++
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~va 92 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCK 92 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEE
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEE
Confidence 46899999999999999999999996 43211000 00000 111 4578899999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC-----ceEEEEEcCCCCEEEEEeCCCeEEEEEccccce------
Q 022716 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-----ENINITYKPDGTHIAVGNRDDELTILDVRKFKP------ 142 (293)
Q Consensus 74 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~------ 142 (293)
|+|++ ..|++++.||.|++||.+. +...+..+. .+.+++|+|||++|++|+.||+|++||+++...
T Consensus 93 wSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 93 PSPID-DWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp ECSSS-SCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred ECCCC-CEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 99975 6789999999999999544 444444222 377899999999999999999999999987532
Q ss_pred -eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE---EEEEee-ccCCCeeE
Q 022716 143 -IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML---CVRTFT-KLEWPVRT 217 (293)
Q Consensus 143 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~---~~~~~~-~~~~~v~~ 217 (293)
+.....+ ...+...+.+++|+|++ +++++.|++|++||+.... ...++. +|...|.+
T Consensus 170 ~l~ti~~~----------------~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 170 FESSIRLS----------------DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EEEEEECS----------------CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred eeeeeecc----------------cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 1111000 02245678999999999 8888999999999997765 234563 67889999
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCCE-EEEEecCCCcceeEE--CCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 218 ISFSHTGDYIASASEDLFIDISNVHTGRT-VHQIPCRAAMNSVEW--NPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~-~~~~~~~~~i~~~~~--sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
++|+ |+.||+++ ++.|++||+.+++. .....+...+..++| +|++..|++++.| |+ |+|.+
T Consensus 232 vaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ed--------G~-klw~~ 295 (588)
T 2j04_A 232 LKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKT--------SY-KVLLE 295 (588)
T ss_dssp EEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSC--------EE-EEEES
T ss_pred EEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCC--------CC-EEEee
Confidence 9999 68999997 69999999998877 445577788999999 9999999999977 45 66665
No 101
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-30 Score=224.14 Aligned_cols=232 Identities=16% Similarity=0.204 Sum_probs=189.4
Q ss_pred cceeecCccccEEEEEECCC----C---CeEEEEeCCCcEEEeecCCCCCCc-eeEEEeeCC-----cCCeeEEEEc---
Q 022716 12 HSREYTGHKKKVHSVAWNCT----G---TKLASGSVDQTARVWHIEPHGHGK-VKDIELRGH-----ADSVDQLCWD--- 75 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~----~---~~l~s~~~dg~v~iw~~~~~~~~~-~~~~~~~~h-----~~~i~~~~~~--- 75 (293)
....+.+|...|.+++|+|+ + ++|++++.||.|++|++....... .....+..| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 35567799999999999999 9 999999999999999997543211 113356677 5899999999
Q ss_pred -CCCCCE-EEEEeCCCeEEEEeCCC------Ceeee-----eee--------ecCceEEEEEcCCCCEEEEEeCCCeEEE
Q 022716 76 -PKHADL-IATASGDKTVRLWDARS------GKCSQ-----QAE--------LSGENINITYKPDGTHIAVGNRDDELTI 134 (293)
Q Consensus 76 -~~~~~~-l~s~~~d~~i~vwd~~~------~~~~~-----~~~--------~~~~~~~~~~~~~~~~l~~~~~d~~i~l 134 (293)
|++ .. |++++.|+.|++||+.+ ++... .+. ....+.+++|+|++ .+++++.|+.+++
T Consensus 134 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i 211 (397)
T 1sq9_A 134 DRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI 211 (397)
T ss_dssp -----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred CCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence 864 67 99999999999999987 54443 333 24567789999999 9999999999999
Q ss_pred EEccccceeeeecc-------cceeeeeEEecCCCEEEEe------------------------c-------------CC
Q 022716 135 LDVRKFKPIHRRKF-------GYEVNEIAWNMTGEMFFLT------------------------T-------------GN 170 (293)
Q Consensus 135 ~d~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~------------------------~-------------~~ 170 (293)
||+++.++...... ...+..+.|++.+..+... . +.
T Consensus 212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence 99998877766654 6678888888876544322 1 34
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee------cc---------------CCCeeEEEEccCC-----
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT------KL---------------EWPVRTISFSHTG----- 224 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~sp~~----- 224 (293)
..+.+++|+|++++|++++.|+.|++||+++++.+..+. .| ..+|.+++|+|++
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~ 371 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 371 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccc
Confidence 567899999999999999999999999999999999998 77 8999999999998
Q ss_pred -----CEEEEecCCCcEEEEEcCCCC
Q 022716 225 -----DYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 225 -----~~l~s~s~d~~i~iw~~~~~~ 245 (293)
++|++++.|+.|++|++.+|+
T Consensus 372 ~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 372 GADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998763
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-30 Score=220.13 Aligned_cols=226 Identities=17% Similarity=0.288 Sum_probs=183.4
Q ss_pred cCccccEEEEEECCC---CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE------cCCCCCEEEEEeC
Q 022716 17 TGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW------DPKHADLIATASG 87 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~---~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~------~~~~~~~l~s~~~ 87 (293)
.+|..+|.+++|+|+ +++|++|+.||.|++||+..... ....+.+|...|.++.| +|+ +.+|++++.
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~ 137 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM---PVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSR 137 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS---CSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEET
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc---cEEEEEecccceEEEeeccccccCCC-ccEEEEEeC
Confidence 379999999999999 69999999999999999975421 22356789999999965 454 568999999
Q ss_pred CCeEEEEeCCCCe-eeeeeee-cC----ceEEEE----EcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716 88 DKTVRLWDARSGK-CSQQAEL-SG----ENINIT----YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 88 d~~i~vwd~~~~~-~~~~~~~-~~----~~~~~~----~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
|+.|++||+++++ ....+.. .+ .+.+++ |+|+++++++++.|+.+++||+++.+......+...+..+.|
T Consensus 138 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~ 217 (357)
T 3i2n_A 138 DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEF 217 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEc
Confidence 9999999998876 4444432 22 455666 679999999999999999999999887777777788999999
Q ss_pred ec---CCCEEEEe--------------------------cCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCCC-----
Q 022716 158 NM---TGEMFFLT--------------------------TGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM----- 202 (293)
Q Consensus 158 ~~---~~~~~~~~--------------------------~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~----- 202 (293)
+| .+..++.. .+...+.+++++|+++ ++++|+.||.|++||++..
T Consensus 218 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 218 DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp SCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred CCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 98 66654432 3445678999999998 8999999999999998643
Q ss_pred --------------EEEEEeeccCCCeeEEEEccCCCEEE-EecCCCcEEEEEcCCCCE
Q 022716 203 --------------LCVRTFTKLEWPVRTISFSHTGDYIA-SASEDLFIDISNVHTGRT 246 (293)
Q Consensus 203 --------------~~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~d~~i~iw~~~~~~~ 246 (293)
..+..+..|..+|.+++|+|++++|+ +++.|+.|++|++.+...
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46777888999999999999999998 899999999999987553
No 103
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=8.6e-30 Score=221.46 Aligned_cols=245 Identities=12% Similarity=0.111 Sum_probs=201.6
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
.+.+|...|.+++|+++++.+++++.|+.|++||++... ....+..|...+.+++|+|++..++++++.|+.|++|
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 239 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA----YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVI 239 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC----EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce----EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEE
Confidence 355889999999999999999999999999999987431 2234567888999999999865555666689999999
Q ss_pred eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe--------CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEE
Q 022716 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGN--------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
|+++++....+.....+..++|+|+++.+++++ .|+.|.+||+++.+.......
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~------------------ 301 (433)
T 3bws_A 240 DRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP------------------ 301 (433)
T ss_dssp ETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE------------------
T ss_pred ECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC------------------
Confidence 999998877777777788999999999999988 488999999987654433211
Q ss_pred ecCCCCEEEEEECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecC-------------
Q 022716 167 TTGNAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASE------------- 232 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~------------- 232 (293)
...+.+++++|+++. +++++.|+.|++||+++++.+..+. +...+.+++|+|+|++|++++.
T Consensus 302 ---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g 377 (433)
T 3bws_A 302 ---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG 377 (433)
T ss_dssp ---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred ---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence 123557889999964 5677999999999999998877764 6678999999999999888776
Q ss_pred --CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 233 --DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 233 --d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
||.|++||..+++.+..+.....+.+++|+|++++|++++.+ .+.++||+++.
T Consensus 378 ~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------d~~i~v~~~~~ 432 (433)
T 3bws_A 378 LVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL-------DHQIRVYRRDG 432 (433)
T ss_dssp SSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT-------TTEEEEEEETT
T ss_pred ccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC-------CCeEEEEEecC
Confidence 579999999999988888777789999999999999988752 26889998874
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.1e-30 Score=216.68 Aligned_cols=220 Identities=19% Similarity=0.250 Sum_probs=177.2
Q ss_pred ceeecCccccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCCCCc-----eeEEEeeCCcCCeeEEEEcCCC-CCEEEE
Q 022716 13 SREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGK-----VKDIELRGHADSVDQLCWDPKH-ADLIAT 84 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~-----~~~~~~~~h~~~i~~~~~~~~~-~~~l~s 84 (293)
...+.+|...|.+++|+| ++++|++|+.||.|++||+....... .....+.+|...|.+++|+|+. +.+|++
T Consensus 50 ~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 129 (351)
T 3f3f_A 50 SDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC 129 (351)
T ss_dssp EEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred cceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE
Confidence 345679999999999999 69999999999999999997542211 2334567899999999999962 468999
Q ss_pred EeCCCeEEEEeCCCCeeeeeee--------------ecCceEEEEEcCC---CCEEEEEeCCCeEEEEEccccceeeeec
Q 022716 85 ASGDKTVRLWDARSGKCSQQAE--------------LSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRK 147 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~~~~~~~~--------------~~~~~~~~~~~~~---~~~l~~~~~d~~i~l~d~~~~~~~~~~~ 147 (293)
++.|+.|++||+++++....+. ....+.+++|+|+ +..+++++.++.+.+|+.........
T Consensus 130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 207 (351)
T 3f3f_A 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA-- 207 (351)
T ss_dssp EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE--
T ss_pred ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee--
Confidence 9999999999998776443322 2335678999997 89999999999998887665432111
Q ss_pred ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC----CEEEEecCCCcEEEEeCCCC---------------------
Q 022716 148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG----RYFAVGSADSLVSLWDISEM--------------------- 202 (293)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~gs~d~~i~iwd~~~~--------------------- 202 (293)
..+..+...+.+++|+|++ ++|++|+.||.|++||++.+
T Consensus 208 ----------------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (351)
T 3f3f_A 208 ----------------AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD 271 (351)
T ss_dssp ----------------EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------
T ss_pred ----------------eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcc
Confidence 1122356678999999998 89999999999999998764
Q ss_pred -------------------------EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716 203 -------------------------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 203 -------------------------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~ 250 (293)
..+..+.+|..+|.+++|+|++++|++|+.|+.|++|++.+++.+..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp -------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 566777889999999999999999999999999999999988766544
No 105
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.2e-31 Score=222.66 Aligned_cols=212 Identities=22% Similarity=0.276 Sum_probs=164.5
Q ss_pred ceeecCccccEEEEEECC--CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCC
Q 022716 13 SREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK 89 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~ 89 (293)
...+.+|.++|.+++|+| ++++|+||+.|++|++||+..... .....+.+|...|.+++|+|+. +.+|++|+.|+
T Consensus 50 ~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~--~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~ 127 (316)
T 3bg1_A 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW--EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG 127 (316)
T ss_dssp EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC--CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS
T ss_pred EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc--eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC
Confidence 456789999999999986 489999999999999999875321 1234567899999999999973 46899999999
Q ss_pred eEEEEeCCCCeee---eeee-ecCceEEEEEcCC-----------------CCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716 90 TVRLWDARSGKCS---QQAE-LSGENINITYKPD-----------------GTHIAVGNRDDELTILDVRKFKPIHRRKF 148 (293)
Q Consensus 90 ~i~vwd~~~~~~~---~~~~-~~~~~~~~~~~~~-----------------~~~l~~~~~d~~i~l~d~~~~~~~~~~~~ 148 (293)
.|++||++.+... .... +...+.+++|+|+ +++|++++.|++|++||++........
T Consensus 128 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-- 205 (316)
T 3bg1_A 128 AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE-- 205 (316)
T ss_dssp CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE--
T ss_pred CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee--
Confidence 9999999875321 1111 2334567889887 478999999999999998643211100
Q ss_pred cceeeeeEEecCCCEEEEecCCCCEEEEEECCCC----CEEEEecCCCcEEEEeCCCC---E-EEEEeeccCCCeeEEEE
Q 022716 149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG----RYFAVGSADSLVSLWDISEM---L-CVRTFTKLEWPVRTISF 220 (293)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~gs~d~~i~iwd~~~~---~-~~~~~~~~~~~v~~l~~ 220 (293)
..+..+...+.+++|+|++ .+|++|+.|++|++||++.. . ....+..|..+|.+++|
T Consensus 206 ---------------~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~ 270 (316)
T 3bg1_A 206 ---------------QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW 270 (316)
T ss_dssp ---------------ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE
T ss_pred ---------------eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE
Confidence 0122456678899999986 88999999999999998752 1 12334568889999999
Q ss_pred ccCCCEEEEecCCCcEEEEEcCC
Q 022716 221 SHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 221 sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
+|++++||+++.|+.|++|+...
T Consensus 271 sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 271 SITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CTTTCCEEEEESSSCEEEEEECT
T ss_pred cCCCCEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999753
No 106
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.5e-30 Score=239.31 Aligned_cols=255 Identities=18% Similarity=0.233 Sum_probs=202.8
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
..+.+.+|..+|++++|+|++++|++|+.||.|++||+.... ....+.+|...|.+++|+|++ ..|++++.|+.|
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i 121 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE----KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTV 121 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSEE
T ss_pred eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----EEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEE
Confidence 346678999999999999999999999999999999987532 234567899999999999974 688999999999
Q ss_pred EEEeCCCC-eeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeeeEEec--CCCEE
Q 022716 92 RLWDARSG-KCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNM--TGEMF 164 (293)
Q Consensus 92 ~vwd~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~--~~~~~~v~~~~--~~~~~ 164 (293)
++||+.++ .....+. +...+.+++|+| ++..+++++.|+.|++||+++..+...... ...+..+.|++ .+..+
T Consensus 122 ~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp EEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred EEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 99999876 4444444 445678899999 889999999999999999987665544432 25678888887 55554
Q ss_pred EEec---------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccC
Q 022716 165 FLTT---------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHT 223 (293)
Q Consensus 165 ~~~~---------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 223 (293)
.... +...+.+++++|+++++++++.||.|++||+.++..+..+..+..++.+++|+|+
T Consensus 202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTT
T ss_pred EEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccC
Confidence 4333 3346789999999999999999999999999999989999889999999999999
Q ss_pred CC--EEEEecCCCcEEEEEcCCCCEEEEE--------------------------------------------ecCCCcc
Q 022716 224 GD--YIASASEDLFIDISNVHTGRTVHQI--------------------------------------------PCRAAMN 257 (293)
Q Consensus 224 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~--------------------------------------------~~~~~i~ 257 (293)
++ ++++++ |+.+.+|+.........+ .+...+.
T Consensus 282 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (814)
T 3mkq_A 282 GRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQ 360 (814)
T ss_dssp CGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCS
T ss_pred CCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCc
Confidence 87 455555 555777776543211110 1123478
Q ss_pred eeEECCCCCeEEEEE
Q 022716 258 SVEWNPKYNLLAYAG 272 (293)
Q Consensus 258 ~~~~sp~~~~la~~~ 272 (293)
+++|+|++.++++++
T Consensus 361 ~~~~spdg~~la~~~ 375 (814)
T 3mkq_A 361 SLAHSPNGRFVTVVG 375 (814)
T ss_dssp EEEECTTSSEEEEEE
T ss_pred eeEECCCCCEEEEec
Confidence 999999999999998
No 107
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=4.6e-29 Score=214.02 Aligned_cols=239 Identities=13% Similarity=0.131 Sum_probs=189.3
Q ss_pred eeecCccccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
+.+.+|. .+.+++|+|+|++| ++++.|+.|++||+... .. ...+..+ ..+.+++|+|++..++++++.++.|+
T Consensus 26 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~-~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 26 ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN---NV-IATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EE-EEEEECS-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC---eE-EEEEECC-CCccceEECCCCCEEEEEECCCCEEE
Confidence 4455554 58999999999987 67779999999998643 21 2233333 38999999998655556777789999
Q ss_pred EEeCCCCeeeeeeeecCceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 93 LWDARSGKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
+||+.+++....+..+..+.+++|+|+++.+ ++++.++.+.+||+++.+....... ..
T Consensus 100 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---------------------~~ 158 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---------------------GR 158 (391)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---------------------CS
T ss_pred EEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---------------------CC
Confidence 9999999888877777788899999999987 6777799999999987665443221 23
Q ss_pred CEEEEEECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec---CCCcEEEEEcCCCCEE
Q 022716 172 GCYCIAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS---EDLFIDISNVHTGRTV 247 (293)
Q Consensus 172 ~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~d~~i~iw~~~~~~~~ 247 (293)
.+.+++++|+++++ ++++.++.|++||+++++....+. +...+.+++|+|++++|++++ .|+.|++||..+++.+
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 45678899999877 677889999999999998777664 456789999999999998887 6899999999999888
Q ss_pred EEEecCCCcceeEECCCCCeEE-EEEcCCCCCCC
Q 022716 248 HQIPCRAAMNSVEWNPKYNLLA-YAGDDKNKYQA 280 (293)
Q Consensus 248 ~~~~~~~~i~~~~~sp~~~~la-~~~~d~~~~~~ 280 (293)
..+.....+.+++|+|++++|+ +++.|+.+++|
T Consensus 238 ~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 238 ARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 8887777788999999999874 55555444433
No 108
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.98 E-value=1.7e-29 Score=216.37 Aligned_cols=201 Identities=14% Similarity=0.194 Sum_probs=168.9
Q ss_pred EEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee---ecCceEEEEEcC-CCCEEEEEeCCCeEEEE
Q 022716 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE---LSGENINITYKP-DGTHIAVGNRDDELTIL 135 (293)
Q Consensus 60 ~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~ 135 (293)
..+.+|...|.+++|+|++..+|++|+.|+.|++||+.+++....+. +...+.+++|+| +++.+++++.|+.+++|
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 146 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLR 146 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEE
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEE
Confidence 35678999999999999865799999999999999999887666554 456778999999 77999999999999999
Q ss_pred EccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCe
Q 022716 136 DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPV 215 (293)
Q Consensus 136 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v 215 (293)
|+++.. ...... ...+...+.+++++|++++|++|+.|+.|++||+ ++..+..+..|...|
T Consensus 147 d~~~~~-~~~~~~-----------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 147 DFSGSV-IQVFAK-----------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV 207 (383)
T ss_dssp ETTSCE-EEEEEC-----------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred ECCCCc-eEEEec-----------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence 998522 111100 0112356889999999999999999999999999 466778889999999
Q ss_pred eEEEEccCCC-EEEEecCCCcEEEEEcCC----CCEEEEEecCCCcceeEECC-CCCeEEEEEcCCCCCC
Q 022716 216 RTISFSHTGD-YIASASEDLFIDISNVHT----GRTVHQIPCRAAMNSVEWNP-KYNLLAYAGDDKNKYQ 279 (293)
Q Consensus 216 ~~l~~sp~~~-~l~s~s~d~~i~iw~~~~----~~~~~~~~~~~~i~~~~~sp-~~~~la~~~~d~~~~~ 279 (293)
.+++|+|+++ +|++|+.|+.|++||+.+ +..+..+.+...|.+++|+| ++++|++++.|+.+++
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 9999999999 999999999999999987 66777778888999999999 9999999998854333
No 109
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4.5e-31 Score=230.27 Aligned_cols=200 Identities=15% Similarity=0.199 Sum_probs=159.8
Q ss_pred eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeee---ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEc
Q 022716 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE---LSGENINITYKP-DGTHIAVGNRDDELTILDV 137 (293)
Q Consensus 62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~ 137 (293)
..+|...|++++|+|.+..+|++|+.||.|+|||+.+++...... +.+.+.+++|+| ++.+|++++.|++|++||+
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 456888999999999877899999999999999998775443332 456688999998 6889999999999999999
Q ss_pred cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716 138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 217 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 217 (293)
++......... ......+.+++++|++.+|++|+.||.|++||++.. .+..+.+|..+|.+
T Consensus 195 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 195 KGNILRVFASS------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTH 255 (435)
T ss_dssp TSCEEEEEECC------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEE
T ss_pred cCCceeEEecc------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEe
Confidence 76432111100 011234567899999999999999999999998654 45678899999999
Q ss_pred EEEccCCC-EEEEecCCCcEEEEEcCCCCEEE----EEecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716 218 ISFSHTGD-YIASASEDLFIDISNVHTGRTVH----QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 218 l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~----~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
++|+|++. +|++|+.|+.|++||+.+++... ...+..+|++++|+|++++|++++.|+.+++|
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence 99999986 78899999999999998765332 23456789999999999999999998654443
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-30 Score=219.09 Aligned_cols=243 Identities=11% Similarity=0.046 Sum_probs=179.5
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCC------CCCceeEEEeeCCcCCeeEEEEcC--CCCCEEEEEeCCCeEE
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPH------GHGKVKDIELRGHADSVDQLCWDP--KHADLIATASGDKTVR 92 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~------~~~~~~~~~~~~h~~~i~~~~~~~--~~~~~l~s~~~d~~i~ 92 (293)
..|.++.|+|+ +++|+.|++|++|+.... ...........+|...|.+++|+| + +.++++++.|+.|+
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~s~dg~i~ 152 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIWADNRGTIG 152 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC----CCEEEEEETTCCEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEEEeCCCcEE
Confidence 56777778887 999999999999987521 011111122336778999999999 6 46899999999999
Q ss_pred EEeCCCCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee-eeecccceeeeeEEecCCCEEEEecC
Q 022716 93 LWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 93 vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
+||++++++..... ....+.+++|+|++.++++|+.|+.|++||+++.+.. .... ..+
T Consensus 153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-------------------~~h 213 (343)
T 3lrv_A 153 FQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-------------------VDE 213 (343)
T ss_dssp EEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC-------------------CCT
T ss_pred EEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe-------------------ccC
Confidence 99999988755442 2335779999999999999999999999999886643 2111 125
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec---cCCCee--EEEEccCCCEEEEecC-CCcEEEEEcCC
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK---LEWPVR--TISFSHTGDYIASASE-DLFIDISNVHT 243 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~---~~~~v~--~l~~sp~~~~l~s~s~-d~~i~iw~~~~ 243 (293)
...+.+++|+|++.+|++++ |+.|++||+++...+..+.. +..++. +++|+|+|++|++++. |+.+++|++.+
T Consensus 214 ~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 214 EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 67889999999999999999 55999999988765544433 334444 6999999999999998 99999999976
Q ss_pred CCEEEEEecCCCcceeEECC---CCCeEEEEEcCCCCCCC--CcceEEEEee
Q 022716 244 GRTVHQIPCRAAMNSVEWNP---KYNLLAYAGDDKNKYQA--DEGVFRIYGF 290 (293)
Q Consensus 244 ~~~~~~~~~~~~i~~~~~sp---~~~~la~~~~d~~~~~~--~~~~~~~~~~ 290 (293)
....... .++..+.|+| +...+++++.|+.+... ....++|..+
T Consensus 293 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~i~~l 341 (343)
T 3lrv_A 293 KTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFNIVAL 341 (343)
T ss_dssp TTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEEEECSSEEEEEEE
T ss_pred cccceEe---cCceeEecCccccccceeEEEecCCceEEEEecCCeEeEEEc
Confidence 6543222 4577889998 88899999998866652 3344555543
No 111
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=214.32 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=172.3
Q ss_pred ceeecCccccEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCC
Q 022716 13 SREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK 89 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~ 89 (293)
.+.+.+|...|++++|+++ +++|++|+.||.|++||+.... ......+.+|...|.+++|+|+. +.+|++++.|+
T Consensus 48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 3567899999999999987 9999999999999999997531 12334567899999999999973 46899999999
Q ss_pred eEEEEeCCCCeeeee--e-eecCceEEEEEcC-------------CCCEEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716 90 TVRLWDARSGKCSQQ--A-ELSGENINITYKP-------------DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN 153 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~--~-~~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~ 153 (293)
.|++||++.+..... + .....+.+++|+| ++..+++++.|+.|++||++........
T Consensus 126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------- 198 (379)
T 3jrp_A 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------- 198 (379)
T ss_dssp EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEE-------
T ss_pred cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceee-------
Confidence 999999988743322 2 3455678899999 6999999999999999999865422111
Q ss_pred eeEEecCCCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCCE-----EEEEeeccCCCeeEEEEccCCC
Q 022716 154 EIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEML-----CVRTFTKLEWPVRTISFSHTGD 225 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~sp~~~ 225 (293)
...+..+...+.+++|+|+ +++|++++.||.|++||++.+. .+.....|...|.+++|+|+++
T Consensus 199 ---------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 269 (379)
T 3jrp_A 199 ---------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 269 (379)
T ss_dssp ---------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred ---------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC
Confidence 0123345677899999999 8999999999999999998752 2222334778999999999999
Q ss_pred EEEEecCCCcEEEEEcCCCC
Q 022716 226 YIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~~~ 245 (293)
+|++++.|+.|++|++..+.
T Consensus 270 ~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 270 VLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp CEEEEESSSSEEEEEEEETT
T ss_pred EEEEecCCCcEEEEeCCCCC
Confidence 99999999999999987543
No 112
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-29 Score=206.93 Aligned_cols=230 Identities=16% Similarity=0.187 Sum_probs=182.1
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
...+.+|...|.+++|+|+++.|++|+.||.|++|++....... ....+.+|...|.++.|. +.++++++.|+.|+
T Consensus 52 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~ 127 (313)
T 3odt_A 52 GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED-PLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAK 127 (313)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC-C-CEECCCSSCEEEEEEE---TTEEEEEETTSEEE
T ss_pred EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC-cccchhhcccCEEEEEec---CCEEEEEeCCCCEE
Confidence 45567899999999999999999999999999999987543222 223567899999999994 45899999999999
Q ss_pred EEeCCCCeeeeeee-ecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE-----
Q 022716 93 LWDARSGKCSQQAE-LSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF----- 165 (293)
Q Consensus 93 vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 165 (293)
+|| .++....+. ....+.++.+.| ++..+++++.|+.+++||...............+..+.|++.+..+.
T Consensus 128 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg 205 (313)
T 3odt_A 128 VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDG 205 (313)
T ss_dssp EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETTS
T ss_pred EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCCC
Confidence 999 445555444 455677888887 89999999999999999954433322222556677788877665221
Q ss_pred ---------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe
Q 022716 166 ---------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 166 ---------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~ 230 (293)
+..+...+.+++++|++ .+++++.||.|++||+++++.+..+..|..+|.+++|+|+++ ++++
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 283 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVG 283 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEE
T ss_pred eEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEE
Confidence 12234568899999999 589999999999999999999999999999999999999998 6679
Q ss_pred cCCCcEEEEEcCCCCEEEEE
Q 022716 231 SEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 231 s~d~~i~iw~~~~~~~~~~~ 250 (293)
+.|+.|++|++.+++.+...
T Consensus 284 ~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 284 SSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp ETTSCEEEEESCGGGCCC--
T ss_pred eCCCcEEEEeCCCCceeehh
Confidence 99999999999887655433
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.2e-30 Score=222.69 Aligned_cols=223 Identities=9% Similarity=0.042 Sum_probs=171.1
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC-----CeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-----SVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~-----~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
+|...|.+++|||+|++||+++.||.|++||.+. ....+. |.. .|.+++|+|+ +++|++|+.||+|+
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafSPD-G~~LAsgs~DGtVk 154 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQ 154 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE------EEEECC-CSSCSTTTCEEEEEECSS-SSCEEEEETTSEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc------eeeecc-CCCccccccEEEEEEcCC-CCEEEEEcCCCEEE
Confidence 6788999999999999999999999999999642 222344 554 4999999997 57899999999999
Q ss_pred EEeCCCCee-------eeeeee-----cCceEEEEEcCCCCEEEEEeCCCeEEEEEcccccee---eeecccceeeeeEE
Q 022716 93 LWDARSGKC-------SQQAEL-----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI---HRRKFGYEVNEIAW 157 (293)
Q Consensus 93 vwd~~~~~~-------~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~---~~~~~~~~~~~v~~ 157 (293)
+||+.++.. ...+.. ...+.+++|+|+| +++++.|+++++||+.+.... +...
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~---------- 222 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ---------- 222 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE----------
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec----------
Confidence 999988752 233322 2468899999999 888999999999998765521 1110
Q ss_pred ecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE--ccCCCEEEEecCCCc
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF--SHTGDYIASASEDLF 235 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~s~s~d~~ 235 (293)
..+...+.+++|+ ++.+|+++ +++|++||+..+.......+|...+..++| +|+++.++++++||+
T Consensus 223 ---------~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 223 ---------NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp ---------CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred ---------ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 1234556678887 68889887 699999999988764444489999999999 999999999999999
Q ss_pred EEEEEcCCCC------E-----------------EEEEecCCCcceeEECCCCCeEEEEEc
Q 022716 236 IDISNVHTGR------T-----------------VHQIPCRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 236 i~iw~~~~~~------~-----------------~~~~~~~~~i~~~~~sp~~~~la~~~~ 273 (293)
++|....-. . +..+.....|.+++|||+|+.+|+++.
T Consensus 291 -klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 291 -KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred -EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence 999874210 0 000111113678999999999999985
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.3e-28 Score=213.72 Aligned_cols=233 Identities=19% Similarity=0.331 Sum_probs=183.6
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 102 (293)
+..|+||++ +.||+|. |++|+|||+.+.. ....+.+.+|...|++++|+|+ +.+|++|+.|+.|++||+.+++++
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~--~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD--ILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCC--EEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCC--EEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEE
Confidence 456999975 5777665 9999999987532 3334456788899999999997 478999999999999999999887
Q ss_pred eeeeecC-ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC
Q 022716 103 QQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM 181 (293)
Q Consensus 103 ~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (293)
..+..+. .+.++. +++..+++|+.|+.+.+||.+...... ..+..+...+..+.++|+
T Consensus 183 ~~~~~h~~~v~~~s--~~~~~l~sgs~d~~i~~~d~~~~~~~~-------------------~~~~~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 183 RNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHV-------------------ATLSGHSQEVCGLRWAPD 241 (420)
T ss_dssp EEECCCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEE-------------------EEEECCSSCEEEEEECTT
T ss_pred EEEeCCCCceEEEe--eCCCEEEEEeCCCceeEeeecccceee-------------------EEecccccceeeeeecCC
Confidence 7765443 344444 567899999999999999987543211 123345667788999999
Q ss_pred CCEEEEecCCCcEEEEeCCCCE----EEEEeeccCCCeeEEEEccCCC-EEEE--ecCCCcEEEEEcCCCCEEEEEecCC
Q 022716 182 GRYFAVGSADSLVSLWDISEML----CVRTFTKLEWPVRTISFSHTGD-YIAS--ASEDLFIDISNVHTGRTVHQIPCRA 254 (293)
Q Consensus 182 ~~~l~~gs~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~~-~l~s--~s~d~~i~iw~~~~~~~~~~~~~~~ 254 (293)
++++++++.|+.+++|+...++ .+.....|...|.+++|+|.+. .+++ |+.|+.|++||+.+++.+..+..+.
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~ 321 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 321 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS
T ss_pred CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc
Confidence 9999999999999999987653 3455677889999999999765 4444 5689999999999999998888888
Q ss_pred CcceeEECCCCCeEEEEE--cCCCCCCCC
Q 022716 255 AMNSVEWNPKYNLLAYAG--DDKNKYQAD 281 (293)
Q Consensus 255 ~i~~~~~sp~~~~la~~~--~d~~~~~~~ 281 (293)
.+.++.|+|+++.+++++ .|+.+++|+
T Consensus 322 ~v~~~~~~~~~~~lv~~sg~~d~~I~iwd 350 (420)
T 4gga_A 322 QVCSILWSPHYKELISGHGFAQNQLVIWK 350 (420)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred ceeeeeecCCCCeEEEEEecCCCEEEEEE
Confidence 999999999999988876 454444433
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.4e-28 Score=211.45 Aligned_cols=253 Identities=17% Similarity=0.202 Sum_probs=168.0
Q ss_pred cCccccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC--CCEEEEEeCCCeEEE
Q 022716 17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH--ADLIATASGDKTVRL 93 (293)
Q Consensus 17 ~~h~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~~l~s~~~d~~i~v 93 (293)
.+|...|.+++|+| +++.|++++.||.|++||+... . ......+...+.++.++|.. ..++++++.|+.|++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL---Q--TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT---E--EEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC---c--cceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence 36999999999999 7789999999999999999753 1 12223467789999998864 348999999999999
Q ss_pred EeCCCCeeeeeee-ecCceEEEEEcCCCCE-EEEEeCCCeEEEEEccccce-eee----------------ecccceeee
Q 022716 94 WDARSGKCSQQAE-LSGENINITYKPDGTH-IAVGNRDDELTILDVRKFKP-IHR----------------RKFGYEVNE 154 (293)
Q Consensus 94 wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~-l~~~~~d~~i~l~d~~~~~~-~~~----------------~~~~~~~~~ 154 (293)
||+++++....+. +...+.+++|+|++++ +++++.|+.+++||++.... ... ..+...+..
T Consensus 171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp EESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred EeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 9999888776665 4566789999999985 88999999999999986542 111 123344666
Q ss_pred eEEecCCCEEEEecCCCCEEEEEE--------------------------CCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 155 IAWNMTGEMFFLTTGNAGCYCIAI--------------------------DPMGRYFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 155 v~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
+.|++.+..+...+.+..+....+ ...+..+++++.++.|++||+.+++.+..+
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 330 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML 330 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee
Confidence 666666665555544433222111 112334555556666777777777778888
Q ss_pred eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCC-CeEEEEEcCCC
Q 022716 209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKY-NLLAYAGDDKN 276 (293)
Q Consensus 209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~-~~la~~~~d~~ 276 (293)
.+|..+|.+++|+|++++|++|+.|+.|++|++.+++.+....... ....++|.. ..+++++.++.
T Consensus 331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 397 (408)
T 4a11_B 331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT--TKSQLNPAFEDAWSSSDEEGG 397 (408)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------
T ss_pred ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE--eccccccccceeecccCccCc
Confidence 8999999999999999999999999999999999987765443222 223455533 33444444433
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.2e-29 Score=206.13 Aligned_cols=209 Identities=11% Similarity=0.084 Sum_probs=149.7
Q ss_pred ccccEEEEEECCC----CCeEEEEeC--------------------CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE
Q 022716 19 HKKKVHSVAWNCT----GTKLASGSV--------------------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74 (293)
Q Consensus 19 h~~~v~~l~~s~~----~~~l~s~~~--------------------dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~ 74 (293)
|...|.+++|+|+ +..+++++. |+.|++|++.+.+ + ....+.+|...+..++|
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~-~~~s~~~~~~~v~~l~f 186 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--G-GKENQFLMPPEETILTF 186 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--C-EEEEEEECCCSSCEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--c-eeeeeccCCCceeeEEe
Confidence 4457888888888 777777653 8999999986532 2 22245578888888888
Q ss_pred cC--CCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC----ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716 75 DP--KHADLIATASGDKTVRLWDARSGKCSQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148 (293)
Q Consensus 75 ~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~ 148 (293)
+| .++.+|+|++.|++|++||+++++++..+..+. .+.+++|+|+|+.+++++.+.. .|
T Consensus 187 s~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w------------- 251 (356)
T 2w18_A 187 AEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KE------------- 251 (356)
T ss_dssp EEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------------------
T ss_pred eccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cc-------------
Confidence 77 235799999999999999999999888876322 3446789999988888764322 12
Q ss_pred cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe-----eccCCCeeEEEEccC
Q 022716 149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF-----TKLEWPVRTISFSHT 223 (293)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~sp~ 223 (293)
.+++|+.|++|++||..+++.+..+ .+|...+.+.+ .+
T Consensus 252 -----------------------------------~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~--~s 294 (356)
T 2w18_A 252 -----------------------------------SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD--VK 294 (356)
T ss_dssp -----------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE--EE
T ss_pred -----------------------------------eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc--cC
Confidence 3678999999999999999877655 24544444333 34
Q ss_pred CCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcc-eeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 224 GDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMN-SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 224 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~-~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
+.++|+|+.|++|+|||+.+++.++.+.. ...+. .++|||+|++||+|+.|+ ++|||++
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~--------TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDG--------NIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTS--------CEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCC--------cEEEecC
Confidence 88999999999999999999999998863 34444 589999999999999885 6777775
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1e-28 Score=215.09 Aligned_cols=212 Identities=21% Similarity=0.389 Sum_probs=174.1
Q ss_pred cceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCce---eEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKV---KDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~---~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
....+.+|...|.+++|+|++. .|++|+.||.|++|++........ ....+.+|...|.+++|+|.+..+|++++.
T Consensus 173 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~ 252 (430)
T 2xyi_A 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252 (430)
T ss_dssp CSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred CcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence 4456789999999999999998 999999999999999975321111 123466899999999999977789999999
Q ss_pred CCeEEEEeCCCC---eeeeeee-ecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccccc-eeeeecccceeeeeEEecCC
Q 022716 88 DKTVRLWDARSG---KCSQQAE-LSGENINITYKPDGT-HIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 88 d~~i~vwd~~~~---~~~~~~~-~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~~~~ 161 (293)
|+.|++||++++ .....+. +...+.+++|+|++. .+++|+.|+.|++||+++.. ++.
T Consensus 253 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~----------------- 315 (430)
T 2xyi_A 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----------------- 315 (430)
T ss_dssp TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE-----------------
T ss_pred CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE-----------------
Confidence 999999999876 3334443 456678999999987 58899999999999998732 222
Q ss_pred CEEEEecCCCCEEEEEECCCCC-EEEEecCCCcEEEEeCCC--------------CEEEEEeeccCCCeeEEEEccCCC-
Q 022716 162 EMFFLTTGNAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE--------------MLCVRTFTKLEWPVRTISFSHTGD- 225 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~--------------~~~~~~~~~~~~~v~~l~~sp~~~- 225 (293)
.+..+...+.+++|+|+++ +|++++.|+.|++||+.. ...+..+.+|...|.+++|+|+++
T Consensus 316 ---~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 392 (430)
T 2xyi_A 316 ---SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392 (430)
T ss_dssp ---EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT
T ss_pred ---EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC
Confidence 1234566788999999984 799999999999999976 356677788999999999999999
Q ss_pred EEEEecCCCcEEEEEcCC
Q 022716 226 YIASASEDLFIDISNVHT 243 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~ 243 (293)
+|++++.|+.|++|++..
T Consensus 393 ~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 393 IICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEEEETTSEEEEEEECH
T ss_pred EEEEEECCCCEEEeEccc
Confidence 899999999999999865
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=8.7e-28 Score=199.98 Aligned_cols=233 Identities=18% Similarity=0.321 Sum_probs=182.7
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 102 (293)
..+|+||+++ .||+| .|++|+|||+.+. .....+.+.+|...|.+++|+|+ +++|++|+.|+.|++||+.++++.
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg--~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSG--DILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTC--CEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCC--CEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeE
Confidence 4679999876 66665 5999999999753 23344556788999999999997 468999999999999999999988
Q ss_pred eeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC
Q 022716 103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG 182 (293)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (293)
..+..+... ...+++++..+++++.++.+.+|+........ ..+..+...+.++++.+++
T Consensus 103 ~~~~~h~~~-~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 103 RNMTSHSAR-VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHV-------------------ATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EEEECCSSC-EEEEEEETTEEEEEETTSEEEEEETTSSSCEE-------------------EEEECCSSCEEEEEECTTS
T ss_pred EEecCccce-EEEeecCCCEEEEEecCCceEeeecCCCceeE-------------------EEEcCccCceEEEEEcCCC
Confidence 776654433 23456677899999999999999976543211 1223455667889999999
Q ss_pred CEEEEecCCCcEEEEeCCCCE----EEEEeeccCCCeeEEEEccCCCE---EEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716 183 RYFAVGSADSLVSLWDISEML----CVRTFTKLEWPVRTISFSHTGDY---IASASEDLFIDISNVHTGRTVHQIPCRAA 255 (293)
Q Consensus 183 ~~l~~gs~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~---l~s~s~d~~i~iw~~~~~~~~~~~~~~~~ 255 (293)
+++++++.|+.|++||+++++ .......+...|.+++++|++.. +++++.++.|++|+...............
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~ 242 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee
Confidence 999999999999999997643 23345567789999999998763 35778899999999999988888888888
Q ss_pred cceeEECCCCCeEEEEE--cCCCCCCC
Q 022716 256 MNSVEWNPKYNLLAYAG--DDKNKYQA 280 (293)
Q Consensus 256 i~~~~~sp~~~~la~~~--~d~~~~~~ 280 (293)
+..+.|+|+++.+++++ .|+.+++|
T Consensus 243 v~~~~~~~~~~~~~~~sg~~d~~i~iw 269 (318)
T 4ggc_A 243 VCSILWSPHYKELISGHGFAQNQLVIW 269 (318)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred eeeeeecccccceEEEEEcCCCEEEEE
Confidence 99999999999888776 45444443
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.2e-29 Score=218.32 Aligned_cols=216 Identities=12% Similarity=0.108 Sum_probs=151.1
Q ss_pred eecCccccEEEEEECC--------CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe
Q 022716 15 EYTGHKKKVHSVAWNC--------TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~--------~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~ 86 (293)
.+.||.+.|.+++|+| ||++|||||.|++|||||+... .....+.+|...|.+++|+|++..+|++++
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~ 206 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE----GPILAGYPLSSPGISVQFRPSNPNQLIVGE 206 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT----EEEEEEEECSSCEEEEEEETTEEEEEEEEE
T ss_pred ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC----ceeeeecCCCCCcEEEEECCCCCceEEecC
Confidence 4679999999999998 8899999999999999999642 233456678899999999998767899999
Q ss_pred CCCeEEEEeCCCCeeeeeee--------------------------ecCceEEEEEc-CCCCEEEEEeCCCeEEEEEccc
Q 022716 87 GDKTVRLWDARSGKCSQQAE--------------------------LSGENINITYK-PDGTHIAVGNRDDELTILDVRK 139 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~~~~~~--------------------------~~~~~~~~~~~-~~~~~l~~~~~d~~i~l~d~~~ 139 (293)
.|++|++||+++++...... ....+.++.|. |+++.+++++.|+++++||++.
T Consensus 207 ~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 207 RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence 99999999998775432211 11234467765 8999999999999999999976
Q ss_pred cceeeeec-ccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE
Q 022716 140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT 217 (293)
Q Consensus 140 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 217 (293)
........ ....+..+.+.+... ........+.++.+.+ ++.++++|+.||+|++||+.++.+...+..|..+|.+
T Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~s 364 (393)
T 4gq1_A 287 NNDYNEISDSTMKLGPKNLLPNVQ--GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVD 364 (393)
T ss_dssp -----------------CCSCSEE--EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred CCCCceEeeecCccccEEEccccc--cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEE
Confidence 55433321 112222222222211 1112222222233333 3456788899999999999988877788889999999
Q ss_pred EEEccCCCEEEEecCCCcE
Q 022716 218 ISFSHTGDYIASASEDLFI 236 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i 236 (293)
++|+|+|++||++++||.+
T Consensus 365 vafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 365 FCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp EEECTTSSEEEEEESSEEE
T ss_pred EEEcCCCCEEEEEeCCCeE
Confidence 9999999999999988853
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.4e-28 Score=208.41 Aligned_cols=221 Identities=22% Similarity=0.349 Sum_probs=172.1
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE--cCCCCCEEEEEeCCCeE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW--DPKHADLIATASGDKTV 91 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~--~~~~~~~l~s~~~d~~i 91 (293)
..+.+|...|.+++|+|++++|++|+.||.|++||+... . ...+.+|...|.++.| +|+ ..+|++++.|+.|
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~--~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~i 153 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN---Q--AIQIAQHDAPVKTIHWIKAPN-YSCVMTGSWDKTL 153 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---E--EEEEEECSSCEEEEEEEECSS-CEEEEEEETTSEE
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC---C--ceeeccccCceEEEEEEeCCC-CCEEEEccCCCcE
Confidence 567899999999999999999999999999999999753 2 2346679999999999 765 4679999999999
Q ss_pred EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec---ccceeeeeE------------
Q 022716 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIA------------ 156 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~---~~~~~~~v~------------ 156 (293)
++||+++++....+..+....++.+.+ ..+++++.++.+.+||++......... .......+.
T Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 154 KFWDTRSSNPMMVLQLPERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp EEECSSCSSCSEEEECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred EEEECCCCcEEEEEecCCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence 999999998887777777766666654 488899999999999997653221111 111111221
Q ss_pred -----------EecCCC-----EEEEecCCC------------CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 157 -----------WNMTGE-----MFFLTTGNA------------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 157 -----------~~~~~~-----~~~~~~~~~------------~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
|+.... ...+..+.. .+.+++++|++++|++|+.||.|++||+++++++..+
T Consensus 232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence 221110 011112222 5899999999999999999999999999999999999
Q ss_pred eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
..|..+|.+++|+|+|++|++|+.|+..+.|++.
T Consensus 312 ~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 312 EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred cCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 9999999999999999999999999876555543
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=6.2e-28 Score=204.96 Aligned_cols=219 Identities=12% Similarity=0.116 Sum_probs=165.5
Q ss_pred EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEE-EEEeCCCeEEEEEccc
Q 022716 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI-AVGNRDDELTILDVRK 139 (293)
Q Consensus 61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~ 139 (293)
...+|...|.+++|+|++ .+|++|+.+ .+++||+.+++........ .+..+.+.++++.+ ++++.|+++++||+++
T Consensus 14 ~~~~h~~~V~~v~fs~dg-~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQ-SCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTS-SEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCC-CEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 346899999999999975 678877766 5789999887665544333 35567888888877 5677789999999999
Q ss_pred cceeeeecccceeeeeEEecCCCEEEE-------ecCCC---------CEEEEEECCCCCEEEE--ecCCCcEEEEeCCC
Q 022716 140 FKPIHRRKFGYEVNEIAWNMTGEMFFL-------TTGNA---------GCYCIAIDPMGRYFAV--GSADSLVSLWDISE 201 (293)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~---------~~~~~~~~~~~~~l~~--gs~d~~i~iwd~~~ 201 (293)
.+.+....+...+..+.+++....... ..... ....+++++ .+++. |+.||.|++||+++
T Consensus 91 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~ 168 (355)
T 3vu4_A 91 KQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQS 168 (355)
T ss_dssp TEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC
T ss_pred CcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCC
Confidence 888888777778888888764311110 00000 122344555 55555 78999999999987
Q ss_pred CE----------------EEEEeeccCCCeeEEEEccCCCEEEEecCCCc-EEEEEcCCCCEEEEEe---cCCCcceeEE
Q 022716 202 ML----------------CVRTFTKLEWPVRTISFSHTGDYIASASEDLF-IDISNVHTGRTVHQIP---CRAAMNSVEW 261 (293)
Q Consensus 202 ~~----------------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~-i~iw~~~~~~~~~~~~---~~~~i~~~~~ 261 (293)
+. ++..+.+|..+|.+++|+|+|++||+|+.|++ |++||+.+++.+..+. +..+|.+++|
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~ 248 (355)
T 3vu4_A 169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW 248 (355)
T ss_dssp ------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred CCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence 64 15678899999999999999999999999998 9999999999998886 6778999999
Q ss_pred CCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 262 NPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 262 sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
+|++++||+++.| +++|||+++.
T Consensus 249 s~~~~~l~s~s~d--------~~v~iw~~~~ 271 (355)
T 3vu4_A 249 STDGSKLAVVSDK--------WTLHVFEIFN 271 (355)
T ss_dssp CTTSCEEEEEETT--------CEEEEEESSC
T ss_pred CCCCCEEEEEECC--------CEEEEEEccC
Confidence 9999999999988 5677777653
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-29 Score=230.86 Aligned_cols=213 Identities=20% Similarity=0.228 Sum_probs=172.1
Q ss_pred ceeecCccccEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-CCEEEEEeCCC
Q 022716 13 SREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDK 89 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~~l~s~~~d~ 89 (293)
...+.+|.++|.+++|+|+ +++|++|+.||.|++||+.... ......+.+|...|.+++|+|+. +..+++|+.|+
T Consensus 46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc--ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 4567899999999999988 9999999999999999997531 11334567899999999999973 57899999999
Q ss_pred eEEEEeCCCCeeeee---eeecCceEEEEEcC-------------CCCEEEEEeCCCeEEEEEccccceeeeecccceee
Q 022716 90 TVRLWDARSGKCSQQ---AELSGENINITYKP-------------DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN 153 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~-------------~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~ 153 (293)
.|++||++++..... ......+.+++|+| ++..+++|+.|+.|++||+++.......
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~------- 196 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------- 196 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEE-------
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccccee-------
Confidence 999999987743222 23456678899999 5899999999999999999875322110
Q ss_pred eeEEecCCCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCCE-----EEEEeeccCCCeeEEEEccCCC
Q 022716 154 EIAWNMTGEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEML-----CVRTFTKLEWPVRTISFSHTGD 225 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~sp~~~ 225 (293)
...+..+...+.+++|+|+ ++++++|+.||.|++||++++. .......|...|.+++|+|+|+
T Consensus 197 ---------~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 267 (753)
T 3jro_A 197 ---------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267 (753)
T ss_dssp ---------EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC
T ss_pred ---------eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC
Confidence 0123356678899999999 8999999999999999998753 2223345778999999999999
Q ss_pred EEEEecCCCcEEEEEcCC
Q 022716 226 YIASASEDLFIDISNVHT 243 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~ 243 (293)
+|++|+.||.|++|++.+
T Consensus 268 ~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 268 VLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CEEEECSSSCEECCBCCS
T ss_pred EEEEEcCCCEEEEEecCC
Confidence 999999999999999874
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=9.3e-27 Score=199.66 Aligned_cols=214 Identities=14% Similarity=0.180 Sum_probs=175.6
Q ss_pred CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceE
Q 022716 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI 112 (293)
Q Consensus 33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 112 (293)
..+++++.|+.|++||+... . ....+..|. .+.+++|+|++..++++++.|+.|++||+.+++....+..+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---~-~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---K-VTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---E-EEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE
T ss_pred EEEEEcCCCCEEEEEECCCC---e-EEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc
Confidence 35788999999999999743 2 222345554 589999999865556788899999999999999888888778888
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE-EEecC
Q 022716 113 NITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF-AVGSA 190 (293)
Q Consensus 113 ~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~ 190 (293)
+++|+|+++++++++ .++.|.+||+++.+...... ....+.+++++|+++.+ ++++.
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~---------------------~~~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK---------------------TGKSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------------------CSSSEEEEEECTTSSEEEEEETT
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe---------------------CCCCcceEEECCCCCEEEEEeCC
Confidence 999999999886555 57999999998766543322 22346788999999977 78888
Q ss_pred CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEE
Q 022716 191 DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLA 269 (293)
Q Consensus 191 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la 269 (293)
++.|++||+.+++.+..+..+ ..+..++|+|++++| ++++.|+.|++||..+++.+..+.....+.+++|+|++++|+
T Consensus 137 ~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 215 (391)
T 1l0q_A 137 DKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAY 215 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEE
T ss_pred CCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEE
Confidence 999999999999888777655 467999999999987 678899999999999998888888777899999999999999
Q ss_pred EEEc
Q 022716 270 YAGD 273 (293)
Q Consensus 270 ~~~~ 273 (293)
+++.
T Consensus 216 ~~~~ 219 (391)
T 1l0q_A 216 VTNV 219 (391)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9884
No 124
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=2.5e-27 Score=199.28 Aligned_cols=216 Identities=14% Similarity=0.145 Sum_probs=175.3
Q ss_pred eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe----eeeeeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEc
Q 022716 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAELSGENINITYKPDGT-HIAVGNRDDELTILDV 137 (293)
Q Consensus 63 ~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~ 137 (293)
.+|.+.|.+++|+|+ +.+|++++.|+.|++||+.++. ......+...+.+++|+|+++ ++++++.|+.|++||+
T Consensus 8 ~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 8 QAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred cCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 479999999999996 4689999999999999998776 444455667788999999999 9999999999999999
Q ss_pred -cccceeeeec--ccceeeeeEEecCCCEEEEecC-----------------------------CCCEEEEEECCCCCEE
Q 022716 138 -RKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTG-----------------------------NAGCYCIAIDPMGRYF 185 (293)
Q Consensus 138 -~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~l 185 (293)
++........ +...+..+.|++ +..++..+. ...+.+++++|++ +
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l 163 (342)
T 1yfq_A 87 IGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--L 163 (342)
T ss_dssp SSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--E
T ss_pred ccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--E
Confidence 8776655455 667889999998 655543322 2357889999887 9
Q ss_pred EEecCCCcEEEEeCCC-CE--EEEEeeccCCCeeEEEEcc-CCCEEEEecCCCcEEEEEcCCC------CEEEEEecC--
Q 022716 186 AVGSADSLVSLWDISE-ML--CVRTFTKLEWPVRTISFSH-TGDYIASASEDLFIDISNVHTG------RTVHQIPCR-- 253 (293)
Q Consensus 186 ~~gs~d~~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~~~~------~~~~~~~~~-- 253 (293)
++++.|+.|++||+++ +. .......+..++.+++|+| +++++++++.|+.|++|+.... +.+..+..+
T Consensus 164 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T 1yfq_A 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred EEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccc
Confidence 9999999999999987 43 2334456788999999999 9999999999999999999876 555555432
Q ss_pred --------CCcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 254 --------AAMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 254 --------~~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
.+|.+++|+|++++|++++.|+.+++|+-
T Consensus 244 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred cccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 27999999999999999998865555443
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=5.5e-27 Score=203.73 Aligned_cols=246 Identities=13% Similarity=0.125 Sum_probs=191.6
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEE---EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI---ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~---~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
..+.+++|+|++..+++++.|+.|++||+.... ..... .+.+|...|.+++|+|+ +.++++++.|+.|++||++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ--TVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCC--EEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEEETT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCe--EeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEEECC
Confidence 456699999977788888889999999987532 11111 24578889999999875 5689999999999999999
Q ss_pred CCeeeeeeee-cCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 98 SGKCSQQAEL-SGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
+++....+.. ...+.+++|+|+++.+++++ .|+.|.+||+++.+....... ...+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---------------------~~~~~~ 258 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK---------------------IGLPRG 258 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC---------------------CSEEEE
T ss_pred CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC---------------------CCCceE
Confidence 9887776653 44677899999999886555 799999999987665443221 223567
Q ss_pred EEECCCCCEEEEec--------CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCCCE
Q 022716 176 IAIDPMGRYFAVGS--------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 176 ~~~~~~~~~l~~gs--------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~~~ 246 (293)
++++|+++.+++++ .|+.|++||+++++.+..+ .+...+..++|+|+++++ ++++.|+.|++||..+++.
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~ 337 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence 88999999988887 5889999999998776654 455688999999999754 7778999999999999988
Q ss_pred EEEEecCCCcceeEECCCCCeEEEEEcCCCC----CC---CCcceEEEEeee
Q 022716 247 VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK----YQ---ADEGVFRIYGFE 291 (293)
Q Consensus 247 ~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~----~~---~~~~~~~~~~~~ 291 (293)
+..+.....+.+++|+|+++++++++.+.+. ++ ...|.+++|+++
T Consensus 338 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 338 QKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 8888888889999999999999988875321 00 123567777654
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=5.8e-25 Score=190.48 Aligned_cols=225 Identities=15% Similarity=0.199 Sum_probs=172.9
Q ss_pred cceeecCccccEEEEEECCCCCeEEEEeCCC---cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQ---TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
..+.+.+|...|.+++|+|||++|++++.|+ .|++||+... .. ..+..|...+.+++|+|++..++++++.+
T Consensus 170 ~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~ 244 (415)
T 2hqs_A 170 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AV--RQVASFPRHNGAPAFSPDGSKLAFALSKT 244 (415)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CE--EEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---cE--EEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence 4566788999999999999999999999886 9999999753 22 24567888899999999865455577766
Q ss_pred Ce--EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC--eEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716 89 KT--VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 89 ~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
+. |.+||+.+++..........+.+++|+|||+.|++++. ++ .+.+||+.+......
T Consensus 245 g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l------------------ 306 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI------------------ 306 (415)
T ss_dssp SSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC------------------
T ss_pred CCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE------------------
Confidence 55 99999988876544445566778999999999998886 44 677778776542211
Q ss_pred EEEecCCCCEEEEEECCCCCEEEEecCC---CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC---cEE
Q 022716 164 FFLTTGNAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL---FID 237 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~---~i~ 237 (293)
..+...+.+++|+|++++|++++.+ ..|.+||+.+++. ..+..+. .+.+++|+|+|++|++++.|+ .|+
T Consensus 307 ---~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~ 381 (415)
T 2hqs_A 307 ---TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLN 381 (415)
T ss_dssp ---CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred ---ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEE
Confidence 1122345678899999999888764 5899999998865 3455554 899999999999999998776 799
Q ss_pred EEEcCCCCEEEEEe-cCCCcceeEECCCC
Q 022716 238 ISNVHTGRTVHQIP-CRAAMNSVEWNPKY 265 (293)
Q Consensus 238 iw~~~~~~~~~~~~-~~~~i~~~~~sp~~ 265 (293)
+||+.. .....+. +...|.+++|+|..
T Consensus 382 ~~d~~g-~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 382 LVSTDG-RFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEETTS-CCEEECCCSSSEEEEEEECCCC
T ss_pred EEECCC-CcEEEeeCCCCCCcCCcccccc
Confidence 999874 4455554 45679999999964
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.6e-25 Score=194.06 Aligned_cols=233 Identities=15% Similarity=0.163 Sum_probs=176.5
Q ss_pred eeecCccccEEEEEECC--------------CCCeEEEEeCC------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEE
Q 022716 14 REYTGHKKKVHSVAWNC--------------TGTKLASGSVD------QTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~--------------~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~ 73 (293)
..+.+|...+..+++++ .+..++.++.+ +.|++||++.. . ...+.+|...+.+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~---~--~~~l~~~~~~v~~~~ 185 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY---N--QFVVHRSPQPLMSPA 185 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC---S--CEEEEEESSCEEEEE
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC---C--CEEEeCCCCcceeeE
Confidence 44677777777777664 26677776664 79999999742 1 234567889999999
Q ss_pred EcCCCCCEEEEEeCCC---eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEE-EEeCCC--eEEEEEccccceeeeec
Q 022716 74 WDPKHADLIATASGDK---TVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDD--ELTILDVRKFKPIHRRK 147 (293)
Q Consensus 74 ~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~--~i~l~d~~~~~~~~~~~ 147 (293)
|+|++ +.|++++.++ .|++||+.++++.........+.+++|+|||+.|+ +++.++ .|.+||+++.+....
T Consensus 186 ~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l-- 262 (415)
T 2hqs_A 186 WSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-- 262 (415)
T ss_dssp ECTTS-SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC--
T ss_pred EcCCC-CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC--
Confidence 99975 5788888775 99999999988765555566778999999999888 555554 489999877543221
Q ss_pred ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CC--cEEEEeCCCCEEEEEeeccCCCeeEEEEccCC
Q 022716 148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DS--LVSLWDISEMLCVRTFTKLEWPVRTISFSHTG 224 (293)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 224 (293)
..+...+.+++|+|++++|+.++. ++ .|.+||+..+.. ..+..+...+.+++|+|+|
T Consensus 263 -------------------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG 322 (415)
T 2hqs_A 263 -------------------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDG 322 (415)
T ss_dssp -------------------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTS
T ss_pred -------------------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCC
Confidence 123345678899999999888876 44 677789887753 3455566788999999999
Q ss_pred CEEEEecCC---CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 225 DYIASASED---LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 225 ~~l~s~s~d---~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
++|++++.+ ..|++||..+++.. .+.....+.+++|+|++++|++++.++
T Consensus 323 ~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 323 KFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp SEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEET
T ss_pred CEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCC
Confidence 999888764 57999999988764 343334788999999999999999876
No 128
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=5.4e-24 Score=178.75 Aligned_cols=241 Identities=15% Similarity=0.150 Sum_probs=165.7
Q ss_pred cCccccEEEEEECCCCCeEEEEeCC-CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGSVD-QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~~d-g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
..|...+.+++|+|+|++|++++.+ +.|++|+++...........+..+. .+..++|+|++..+++++..++.|.+||
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3567789999999999999988886 9999999973221111112233333 6789999998644445555589999999
Q ss_pred CCCC---eeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccc-cceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 96 ARSG---KCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 96 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
+..+ +..........+..++|+|+++++++++ .++.+.+||+.+ .+...... . .......
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-------~--------~~~~~~~ 177 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP-------A--------EVTTVEG 177 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-------E--------EEECSTT
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc-------c--------ccccCCC
Confidence 9433 3333444455677899999999888887 899999999976 32211100 0 0011122
Q ss_pred CCEEEEEECCCCCEEE-EecCCCcEEEEeCCC--CE--EEEEeecc------CCCeeEEEEccCCCEEE-EecCCCcEEE
Q 022716 171 AGCYCIAIDPMGRYFA-VGSADSLVSLWDISE--ML--CVRTFTKL------EWPVRTISFSHTGDYIA-SASEDLFIDI 238 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~-~gs~d~~i~iwd~~~--~~--~~~~~~~~------~~~v~~l~~sp~~~~l~-s~s~d~~i~i 238 (293)
..+..++++|++++++ ++..++.|.+|++.. +. ....+... ...+..++|+|+|++|+ ++..|+.|.+
T Consensus 178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 3456789999999765 455889999999853 32 22222211 23566899999998876 5568999999
Q ss_pred EEcC--CC--CEEEEEecCCCcceeEECCCCCeEEEEEc
Q 022716 239 SNVH--TG--RTVHQIPCRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 239 w~~~--~~--~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 273 (293)
|++. ++ +.+..+.....+..++|+|++++|++++.
T Consensus 258 ~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 258 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp EEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred EEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC
Confidence 9998 33 33445555556899999999998888874
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=1.2e-24 Score=178.65 Aligned_cols=237 Identities=17% Similarity=0.188 Sum_probs=172.3
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCC-CCCCceeEEEeeCC-cCCeeEEEEcCCCCCEEEEEe--CC
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-HGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATAS--GD 88 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~-~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~~l~s~~--~d 88 (293)
...+.+|...|.+++|+|+|++|++++ ++.|++||+.. .. .. .....| ...+.+++|+|++ ..|++++ .+
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~---~~-~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~ 107 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS---PE-KVDTGFATICNNDHGISPDG-ALYAISDKVEF 107 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS---CE-ECCCTTCCCBCSCCEECTTS-SEEEEEECTTT
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC---ce-EeccccccccccceEECCCC-CEEEEEEeCCC
Confidence 345667899999999999999999987 88999999975 32 11 122344 3678899999975 5777777 33
Q ss_pred CeEEEE--eCCCCeeeeeeeecCceEEEEEcCCCCEEE-EEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE
Q 022716 89 KTVRLW--DARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (293)
Q Consensus 89 ~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (293)
+...+| +..++.. ..+........++|+|+++.++ ++..++.+.+|+++..... ...
T Consensus 108 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-------------------~~~ 167 (297)
T 2ojh_A 108 GKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-------------------ETR 167 (297)
T ss_dssp SSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-------------------EEE
T ss_pred CcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-------------------ceE
Confidence 455555 4454442 3333344567789999999887 6778999999986432110 111
Q ss_pred EecCCCCEEEEEECCCCCEEEEec-CCCcEEEEeCC-CCEEEEEeeccCCCeeEEEEccCCCEEEEecCC----------
Q 022716 166 LTTGNAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS-EMLCVRTFTKLEWPVRTISFSHTGDYIASASED---------- 233 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d---------- 233 (293)
+..+...+.+++|+|++++++.++ .++.+++|++. ....+..+..+...+..++|+|+|++|++++.+
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 122344567889999999887665 58899999875 444566777777789999999999999888866
Q ss_pred -CcEEEEEcCCCCEEE--EE-ecCCCcceeEECCCCCeEEEEEcCC
Q 022716 234 -LFIDISNVHTGRTVH--QI-PCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 234 -~~i~iw~~~~~~~~~--~~-~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
..|++||..+++... .+ .+...+..++|+|++++|++++.+.
T Consensus 248 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 569999998876533 33 3456799999999999999998774
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=7.5e-23 Score=171.41 Aligned_cols=254 Identities=11% Similarity=0.094 Sum_probs=181.2
Q ss_pred EEECCCCCe-EEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee-ee
Q 022716 26 VAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQ 103 (293)
Q Consensus 26 l~~s~~~~~-l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~ 103 (293)
..|.+++++ +++++.++.|++||++... .. .....+...+ .++|+|++..+++++..++.|.+||..+++. ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~---~~-~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE---IL-NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCC---EE-EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccc---ee-eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence 346666665 6788889999999987532 21 1223344556 8999998654555555589999999998886 55
Q ss_pred eeeecCceEE-EEEcCCCCEEEEEeCCC---eEEEEEccccceeeeecccceeeeeEEecCCCEEEEec-CC--------
Q 022716 104 QAELSGENIN-ITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GN-------- 170 (293)
Q Consensus 104 ~~~~~~~~~~-~~~~~~~~~l~~~~~d~---~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~-------- 170 (293)
.......+.. ++|+|+|++++++..++ .+.+||+++.+.......+.....+.|+|+++.+++.. ..
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 6666666667 99999999999655553 89999999888777776666778899999886444332 21
Q ss_pred ------------------CCEEEEEECCCCCEE-EEecCCCcEEEEeCCCCEE---EEEeeccCCCeeEEEEccCCCEEE
Q 022716 171 ------------------AGCYCIAIDPMGRYF-AVGSADSLVSLWDISEMLC---VRTFTKLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 171 ------------------~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~sp~~~~l~ 228 (293)
.....++++|+++++ +++..++.|.+||+++++. +..+.. ...+..++|+|+|++|+
T Consensus 158 ~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 158 IDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp ECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEE
T ss_pred ECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEE
Confidence 123467899999855 5556789999999988766 666654 35678999999999775
Q ss_pred Ee-cCCCcEEEEEcCCCCE--EEEEecC-----C---CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 229 SA-SEDLFIDISNVHTGRT--VHQIPCR-----A---AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 229 s~-s~d~~i~iw~~~~~~~--~~~~~~~-----~---~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
.+ ..++.|.+||..+++. +..+... . ..+.++|+|++++|++++.+. +.++||+++.
T Consensus 237 v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------~~v~v~d~~~ 304 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS-------RELKVFTISG 304 (331)
T ss_dssp EECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT-------TEEEEEETTS
T ss_pred EEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC-------CcEEEEEecC
Confidence 55 4678899999998876 4433322 1 124589999999988877653 5677777653
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=4.1e-22 Score=168.10 Aligned_cols=265 Identities=11% Similarity=0.054 Sum_probs=194.5
Q ss_pred ccccEEEEEECCCCCeEEEEeC-------CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 19 HKKKVHSVAWNCTGTKLASGSV-------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~-------dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
....+..++|+|+|+++++++. ++.|.+||..... ....+.. ...+..+.++|++..++++...++.|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~~~v 113 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE--VTQAIHN---DLKPFGATINNTTQTLWFGNTVNSAV 113 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC--EEEEEEE---SSCCCSEEEETTTTEEEEEETTTTEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe--EEEEEec---CCCcceEEECCCCCEEEEEecCCCEE
Confidence 3457889999999999887774 5689999987532 2222222 23466788999865567777778999
Q ss_pred EEEeCCCCeeeeeeeecC----------ceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeec-ccceeeeeEEe
Q 022716 92 RLWDARSGKCSQQAELSG----------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRK-FGYEVNEIAWN 158 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~-~~~~~~~v~~~ 158 (293)
.+||..+++....+.... .+..++++|+++.++++. .++.+.+||+++.+...... .+..+..+.|+
T Consensus 114 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 999999988776665532 256799999999887776 47899999999888777665 45557788899
Q ss_pred cCCCEEEEecCCC-------------------------CEEEEEECCCCCEEEEecC-CCcEEEEeCCCCEEEEEeeccC
Q 022716 159 MTGEMFFLTTGNA-------------------------GCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTKLE 212 (293)
Q Consensus 159 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~~~~~~ 212 (293)
+++..+++...+. .+..++++|+++++++++. ++.|.+||..+++.+..+....
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence 8887666544321 2445889999997666654 5999999999988777765433
Q ss_pred CCeeEEEEccCCCEEE-EecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC-CCCCCCcceEEEEee
Q 022716 213 WPVRTISFSHTGDYIA-SASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK-NKYQADEGVFRIYGF 290 (293)
Q Consensus 213 ~~v~~l~~sp~~~~l~-s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~-~~~~~~~~~~~~~~~ 290 (293)
...++|+|+|++++ +...++.|.+||..+++.+..+........++|+|++++|.++..++ .....+..--+||-+
T Consensus 274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~~~~~~~~~~~v~~i 351 (353)
T 3vgz_A 274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRI 351 (353)
T ss_dssp --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECCCBTTBCCSSCEEEEEE
T ss_pred --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcccccccccccCCCcEEEE
Confidence 36799999999654 45579999999999999888887777789999999999776666553 233333333345443
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.3e-22 Score=181.27 Aligned_cols=238 Identities=11% Similarity=0.047 Sum_probs=183.2
Q ss_pred EECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC--CCCeeee
Q 022716 27 AWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDA--RSGKCSQ 103 (293)
Q Consensus 27 ~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~--~~~~~~~ 103 (293)
+|+|++..+++++.|++|.+||..... .. ..+. +|. +..++++|++ ++|++++.|+.|++||+ .+++++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--~~--~~i~~g~~--~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKK--IV--KVIDTGYA--VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVA 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCC--EE--EEEECSTT--EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCce--EE--EEEecCcc--cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEE
Confidence 488999999999999999999987532 22 2334 443 7889999974 68889999999999999 7888887
Q ss_pred eeeecCceEEEEEcC----CCCEEEEEeC-CCeEEEEEccccceeeeeccc------------ceeeeeEEecCCCEEEE
Q 022716 104 QAELSGENINITYKP----DGTHIAVGNR-DDELTILDVRKFKPIHRRKFG------------YEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 104 ~~~~~~~~~~~~~~~----~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~ 166 (293)
.+.....+..++|+| +|++++++.. ++++.+||..+.+++...... ..+..+.+++.+..+++
T Consensus 217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 777777788999999 9999999884 899999999988877665431 14567778876655443
Q ss_pred ecCC-----------------------CCEEEEEECCCCCEEEE-ecCCCcEEEEeCCCCEEEEEeec----cCCCeeEE
Q 022716 167 TTGN-----------------------AGCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTFTK----LEWPVRTI 218 (293)
Q Consensus 167 ~~~~-----------------------~~~~~~~~~~~~~~l~~-gs~d~~i~iwd~~~~~~~~~~~~----~~~~v~~l 218 (293)
.... ..+..++|+|+++++++ +..+++|.+||+++++++..+.. |......+
T Consensus 297 s~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp EETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred EECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 3211 12335789999997655 45689999999999998887764 43333333
Q ss_pred EEccC-CCEEEEec-CCCcEEEEEcCC-------CCEEEEEecC-CCcceeEECCCCCeEEEEE
Q 022716 219 SFSHT-GDYIASAS-EDLFIDISNVHT-------GRTVHQIPCR-AAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 219 ~~sp~-~~~l~s~s-~d~~i~iw~~~~-------~~~~~~~~~~-~~i~~~~~sp~~~~la~~~ 272 (293)
++|+ +..+++++ .|++|.+||..+ .+.++.+..+ ..+..++|||++++|.+++
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 4687 66778876 689999999998 7888888754 4678899999999999987
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=6.6e-23 Score=183.12 Aligned_cols=245 Identities=9% Similarity=0.066 Sum_probs=183.0
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcC----CCCCEEEEEe-CCCeEEEEeCC
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP----KHADLIATAS-GDKTVRLWDAR 97 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~----~~~~~l~s~~-~d~~i~vwd~~ 97 (293)
+++++|+|||++|++++.|++|++||+.... .. ....+. +......++|+| ++ +++++++ .+++|.+||..
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-~~-~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKE-PT-KVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSS-CE-EEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCC-Cc-EEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEecc
Confidence 8999999999999999999999999993111 11 122333 334578999999 75 5666666 58999999999
Q ss_pred CCeeeeeeeec------------CceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceee--eecccceeeeeEEecCCC
Q 022716 98 SGKCSQQAELS------------GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIH--RRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 98 ~~~~~~~~~~~------------~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~--~~~~~~~~~~v~~~~~~~ 162 (293)
+.+++..+... ..+..+.++|++..+ ++...+++|.+||+.+...+. ....+..+..+.|+|+++
T Consensus 257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR 336 (543)
T ss_dssp TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence 98887766542 145678999987655 455578999999998755433 333445567788999888
Q ss_pred EEEEecCCC-C-------------------------EEEEEECCC-CCEEEEec-CCCcEEEEeCCC-------CEEEEE
Q 022716 163 MFFLTTGNA-G-------------------------CYCIAIDPM-GRYFAVGS-ADSLVSLWDISE-------MLCVRT 207 (293)
Q Consensus 163 ~~~~~~~~~-~-------------------------~~~~~~~~~-~~~l~~gs-~d~~i~iwd~~~-------~~~~~~ 207 (293)
.++...... . ... .++|+ +..++++. .|++|.+||+.+ ++++++
T Consensus 337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~ 415 (543)
T 1nir_A 337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE 415 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence 766543211 1 111 13566 56677775 689999999988 889999
Q ss_pred eeccCCCeeEEEEccCCCEEEEec-------CCCcEEEEEcCCCCEE-EEEe---------cCCCcceeEECCCCCeEEE
Q 022716 208 FTKLEWPVRTISFSHTGDYIASAS-------EDLFIDISNVHTGRTV-HQIP---------CRAAMNSVEWNPKYNLLAY 270 (293)
Q Consensus 208 ~~~~~~~v~~l~~sp~~~~l~s~s-------~d~~i~iw~~~~~~~~-~~~~---------~~~~i~~~~~sp~~~~la~ 270 (293)
+..+...+..++|+|+|++|++++ .+..|.+||+.+++.. ..++ ....+..++|+|+|+.+.+
T Consensus 416 l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 495 (543)
T 1nir_A 416 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 495 (543)
T ss_dssp EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence 999988889999999999999987 2679999999998876 4442 2456889999999999887
Q ss_pred EE
Q 022716 271 AG 272 (293)
Q Consensus 271 ~~ 272 (293)
+.
T Consensus 496 s~ 497 (543)
T 1nir_A 496 SV 497 (543)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 134
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=4.2e-22 Score=166.78 Aligned_cols=244 Identities=12% Similarity=0.070 Sum_probs=176.0
Q ss_pred CeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC-CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--
Q 022716 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-- 109 (293)
Q Consensus 33 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~-~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-- 109 (293)
++|++++.++.|++||+.... ....+.. ++.. .+..++|+|++..+++++..++.|.+||+.+++....+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA--VDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE--EEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCc--EEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 478999999999999987431 1111211 2222 467889999865566777778999999999888776655433
Q ss_pred ----ceEEEEEcCCCCEEEEEe------------CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC-
Q 022716 110 ----ENINITYKPDGTHIAVGN------------RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG- 172 (293)
Q Consensus 110 ----~~~~~~~~~~~~~l~~~~------------~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 172 (293)
.+..++|+|+|++++++. .++.+.+||+.+.+.......+..+..+.|++++..+++..+.-.
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~ 158 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHV 158 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEE
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEE
Confidence 556799999999998886 579999999988777666665666778888888876555422100
Q ss_pred -------EE----------EEEECCCCCEEEEecCC-C-----------------------cEEEEeCCCCEEE-EEeec
Q 022716 173 -------CY----------CIAIDPMGRYFAVGSAD-S-----------------------LVSLWDISEMLCV-RTFTK 210 (293)
Q Consensus 173 -------~~----------~~~~~~~~~~l~~gs~d-~-----------------------~i~iwd~~~~~~~-~~~~~ 210 (293)
+. .++++|+++.++..+.. + .|.+||+++++.. ..+..
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 238 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence 00 11345666554443322 2 3688898877653 22344
Q ss_pred cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 211 LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 211 ~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
+...+..++|+|+|++++++ ++.|.+||..+++.+..+.....+.+++|+|++++|++++.++.+++++
T Consensus 239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 55678899999999999888 7999999999998888877777789999999999999887765554443
No 135
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=4.9e-22 Score=164.11 Aligned_cols=239 Identities=13% Similarity=0.058 Sum_probs=159.6
Q ss_pred cEEEEEECCCCC---eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 22 KVHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 22 ~v~~l~~s~~~~---~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
.+.++.|-..|. .+++++ ...|++|+.... ..=.....+..|+.+|..+.+.|+..+++..+-.+-.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------- 111 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI------- 111 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE-------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccc-------
Confidence 467777776664 566666 689999998753 11123456889999999999999766654332222111
Q ss_pred CeeeeeeeecCceEEEEEcCC----CCEEEEEeCCCeEEEEEccccceeeee--cccceeeeeEEecCCCEEE-EecCCC
Q 022716 99 GKCSQQAELSGENINITYKPD----GTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFF-LTTGNA 171 (293)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~d~~i~l~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~-~~~~~~ 171 (293)
..+..++++|+ ++.+++++. .+.+|++.+.+.+... .++..++.+.++++++... ...+..
T Consensus 112 ----------~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~ 179 (356)
T 2w18_A 112 ----------REIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP 179 (356)
T ss_dssp ----------EEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC
T ss_pred ----------cceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC
Confidence 23446778888 778888763 3677888766655552 2566777777777776533 344555
Q ss_pred CEEEEEECC---CCCEEEEecCCCcEEEEeCCCCEEEEEeeccC---CCeeEEEEccCCCEE------------EEecCC
Q 022716 172 GCYCIAIDP---MGRYFAVGSADSLVSLWDISEMLCVRTFTKLE---WPVRTISFSHTGDYI------------ASASED 233 (293)
Q Consensus 172 ~~~~~~~~~---~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~l------------~s~s~d 233 (293)
.+..++|+| ++..||+|+.|++|+|||++++++++++.+|. ..+.+++|+|+|+++ ++|+.|
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 667778888 78999999999999999999999999998654 367778999999986 668899
Q ss_pred CcEEEEEcCCCCEEEEEe----cCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 234 LFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 234 ~~i~iw~~~~~~~~~~~~----~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
++|++||..+++.+..+. ......-++.+.++..+|+++.|+.+++||
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWD 311 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEE
Confidence 999999999998776542 111112233333477899999886444433
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.2e-22 Score=187.99 Aligned_cols=246 Identities=10% Similarity=0.066 Sum_probs=166.2
Q ss_pred cccEEEEEECCCCCeEEEEeC-CC-----cEEEeecCCCCCCceeEEEeeCCc----------------------CCeeE
Q 022716 20 KKKVHSVAWNCTGTKLASGSV-DQ-----TARVWHIEPHGHGKVKDIELRGHA----------------------DSVDQ 71 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~-dg-----~v~iw~~~~~~~~~~~~~~~~~h~----------------------~~i~~ 71 (293)
...|.+++|||||++|++++. |+ .|++||+.... .........+. ..+..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ--TRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC--EEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc--eeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 457999999999999999998 88 99999987532 11111111122 23788
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEeCCCC---eeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc
Q 022716 72 LCWDPKHADLIATASGDKTVRLWDARSG---KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148 (293)
Q Consensus 72 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~ 148 (293)
++|+|++ +.|++++. +.|.+||+.++ ...........+..++|+|||++++.++ ++.|.+||+.+....+....
T Consensus 114 ~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 114 YQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp CEECTTS-SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred eEECCCC-CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence 9999985 56666665 99999999887 5444334446678899999999999887 56999999987654433221
Q ss_pred cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC---------------------------------cEE
Q 022716 149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS---------------------------------LVS 195 (293)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~---------------------------------~i~ 195 (293)
+... +..... .. ........+..++|+|||++|++++.|+ .|.
T Consensus 191 ~~~~--~~~g~~-~~-v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 191 GSTT--IGNGIA-EF-VADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCSS--EEESCC-CH-HHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred Cccc--eecccc-ce-eeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 1100 000000 00 0000000123567777777777776554 788
Q ss_pred EEeCCC-CEEEEEee--ccCCCeeEEEEccCCCEEEEecC-----CCcEEEEEcCCCCEEEEEecCC-----CcceeEEC
Q 022716 196 LWDISE-MLCVRTFT--KLEWPVRTISFSHTGDYIASASE-----DLFIDISNVHTGRTVHQIPCRA-----AMNSVEWN 262 (293)
Q Consensus 196 iwd~~~-~~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~-----d~~i~iw~~~~~~~~~~~~~~~-----~i~~~~~s 262 (293)
+||+.+ ++...... .+...+..++| |||++|+.++. +..|++||..+++....+.... .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 899987 76543332 36678999999 99999987653 5779999999988765554322 45789999
Q ss_pred CCCCeEEEEEcCC
Q 022716 263 PKYNLLAYAGDDK 275 (293)
Q Consensus 263 p~~~~la~~~~d~ 275 (293)
|+|+++++++.|+
T Consensus 346 pdg~~~~~~~~~g 358 (741)
T 2ecf_A 346 DDGSILWSSERTG 358 (741)
T ss_dssp TTSCEEEEECTTS
T ss_pred CCCeEEEEecCCC
Confidence 9999888887664
No 137
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=2.3e-21 Score=163.56 Aligned_cols=235 Identities=13% Similarity=0.187 Sum_probs=157.9
Q ss_pred CccccEEEEEECCCCCeEEEEeC---CCcEEEeecCCCCCCceeE-EEeeCCcCCeeEEEEcCCCCCEEEEEe-CCCeEE
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATAS-GDKTVR 92 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~~l~s~~-~d~~i~ 92 (293)
.+...+..++|+|+|+ |++++. ++.|++|+++.. .... ..+..+...+..++|+|++ +.|++++ .++.+.
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ---TAHKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAE 111 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT---EEEEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC---cEEEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEE
Confidence 4556788899999999 655544 689999999542 2111 2234466678899999975 5556666 789999
Q ss_pred EEeCC-CCee--eeeeeec----------CceEEEEEcCCCCEEEEEeCCCeEEEEEccc-cceeeeecccceeeeeEEe
Q 022716 93 LWDAR-SGKC--SQQAELS----------GENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 93 vwd~~-~~~~--~~~~~~~----------~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~-~~~~~~~~~~~~~~~v~~~ 158 (293)
+|++. .+.. ....... ..+..++|+|+|+.+++...++.+.+||+.. ........ +
T Consensus 112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~-------~--- 181 (347)
T 3hfq_A 112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSV-------L--- 181 (347)
T ss_dssp EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEE-------E---
T ss_pred EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeee-------E---
Confidence 99985 3332 2222221 1256799999999666666788999999873 22111100 0
Q ss_pred cCCCEEEEecCCCCEEEEEECCCCCEEEE-ecCCCcEEEEeCCC--CEE--EEEeeccC------CCeeEEEEccCCCEE
Q 022716 159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAV-GSADSLVSLWDISE--MLC--VRTFTKLE------WPVRTISFSHTGDYI 227 (293)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-gs~d~~i~iwd~~~--~~~--~~~~~~~~------~~v~~l~~sp~~~~l 227 (293)
.......+..++|+|+++++++ +..++.|.+|++.. +.. +..+.... ..+..++|+|+|++|
T Consensus 182 -------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 182 -------TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp -------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred -------EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 0111224567899999995554 66789999999863 442 22332222 348889999999987
Q ss_pred -EEecCCCcEEEEEcCC-C--CEEEEEec-CCCcceeEECCCCCeEEEEEcC
Q 022716 228 -ASASEDLFIDISNVHT-G--RTVHQIPC-RAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 228 -~s~s~d~~i~iw~~~~-~--~~~~~~~~-~~~i~~~~~sp~~~~la~~~~d 274 (293)
+++..++.|.+|++.. + +.+..+.. ...+..++|+|++++|++++.+
T Consensus 255 ~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 306 (347)
T 3hfq_A 255 YVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN 306 (347)
T ss_dssp EEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC
Confidence 5666789999999873 3 33444444 3458899999999999998865
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=8e-22 Score=181.68 Aligned_cols=244 Identities=12% Similarity=0.117 Sum_probs=179.1
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC--
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-- 98 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-- 98 (293)
..|.+++|||| +.++.+ .|+.+++||+... . ...+..+...+..++|+|++ +.|++ +.|+.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~---~--~~~l~~~~~~~~~~~~SpdG-~~la~-~~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR---K--VTYLFDTNEETASLDFSPVG-DRVAY-VRNHNLYIARGGKLG 152 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT---E--EEEEECCTTCCTTCEECTTS-SEEEE-EETTEEEEEECBCTT
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCC---c--eEEccCCcccccCCcCCCCC-CEEEE-EECCeEEEEecCccc
Confidence 56999999999 666655 4699999998742 2 23345667778889999985 46666 4689999999988
Q ss_pred ---CeeeeeeeecCc---------------eEEEEEcCCCCEEEEEe---------------------------------
Q 022716 99 ---GKCSQQAELSGE---------------NINITYKPDGTHIAVGN--------------------------------- 127 (293)
Q Consensus 99 ---~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~--------------------------------- 127 (293)
++.......... +..+.|+|||++|++++
T Consensus 153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 765543322222 36789999999999987
Q ss_pred CCCeEEEEEccccceeeee---cccceeeeeEEecCCCEEEEecCC---------------C-C---------------E
Q 022716 128 RDDELTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTGN---------------A-G---------------C 173 (293)
Q Consensus 128 ~d~~i~l~d~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~---------------~-~---------------~ 173 (293)
.+..+.+||+.+....... .....+..+.|+|++..+.+...+ . . +
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 4468999999876654332 233457889999998865543211 1 0 1
Q ss_pred EEEEECC--CCCEEEEecCCCcEEEEeCC-CCEEEEEeeccCCCeeE-EEEccCCCEEEEec-CCC----cEEEEEcCCC
Q 022716 174 YCIAIDP--MGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRT-ISFSHTGDYIASAS-EDL----FIDISNVHTG 244 (293)
Q Consensus 174 ~~~~~~~--~~~~l~~gs~d~~i~iwd~~-~~~~~~~~~~~~~~v~~-l~~sp~~~~l~s~s-~d~----~i~iw~~~~~ 244 (293)
..++|+| +++++++++.|+.++||++. ++..+..+..+...+.. ++|+|+|+.|+.++ .++ .|+.|+..++
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 2358999 99999999999999999875 56667778888888887 79999999876554 444 6777787776
Q ss_pred CEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716 245 RTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 245 ~~~~~~~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
+ ...+.+...+.+++|||++++|+++..+
T Consensus 393 ~-~~~l~~~~~~~~~~~spdg~~l~~~~~~ 421 (706)
T 2z3z_A 393 K-TKDLTPESGMHRTQLSPDGSAIIDIFQS 421 (706)
T ss_dssp C-CEESCCSSSEEEEEECTTSSEEEEEEEC
T ss_pred C-ceeccCCCceEEEEECCCCCEEEEEecC
Confidence 5 4455556678899999999999887654
No 139
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=5.6e-22 Score=166.92 Aligned_cols=231 Identities=10% Similarity=-0.013 Sum_probs=164.0
Q ss_pred EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeee
Q 022716 25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (293)
Q Consensus 25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 103 (293)
.+++++++..+++++.++.|++||+... ... ..+..+. ..+..++|+|++..++++...++.|.+||+.+++...
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~-~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD---TVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT---EEE-EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC---cEE-EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 4567888889999999999999998743 211 1222222 2467889999865456677779999999999988776
Q ss_pred eeeecCc-------eEEEEEcCCCCEEEEEeCC------------CeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716 104 QAELSGE-------NINITYKPDGTHIAVGNRD------------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 104 ~~~~~~~-------~~~~~~~~~~~~l~~~~~d------------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
.+..... +..++|+|+|+++++++.+ +.+.+||+.+.+.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---------------- 143 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT---------------- 143 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE----------------
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee----------------
Confidence 6654332 5678999999999998865 8999999987432221100
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc---------------------------------
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--------------------------------- 211 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--------------------------------- 211 (293)
......+.+++++|+++ +++++. .|.+||+++++.+..+...
T Consensus 144 --~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T 1jmx_B 144 --FPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 218 (349)
T ss_dssp --EECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred --ccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence 00112345667788887 444433 3888888777655544322
Q ss_pred -----------------------------------CCCeeEEEEcc-CCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716 212 -----------------------------------EWPVRTISFSH-TGDYIASASEDLFIDISNVHTGRTVHQIPCRAA 255 (293)
Q Consensus 212 -----------------------------------~~~v~~l~~sp-~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~ 255 (293)
...+..++|+| ++++++++ ++.|.+||..+++.+..+.....
T Consensus 219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~ 296 (349)
T 1jmx_B 219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT 296 (349)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC
T ss_pred cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC
Confidence 11355678889 99999888 88999999999988888777677
Q ss_pred cceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 256 MNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 256 i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
+..++|+|++++|++++.++.+++|+.
T Consensus 297 ~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 297 YYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp CCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred ccceEECCCCCEEEEecCCCeEEEEec
Confidence 889999999999888776655555444
No 140
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.91 E-value=1.2e-20 Score=160.02 Aligned_cols=249 Identities=12% Similarity=0.121 Sum_probs=162.8
Q ss_pred ccccEEEEEECCCCCeEEEEeCC----CcEEEeecCCCCCCceeEE-EeeCCcCCeeEEEEcCCCCCEEEEEe-CCCeEE
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVD----QTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATAS-GDKTVR 92 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~d----g~v~iw~~~~~~~~~~~~~-~~~~h~~~i~~~~~~~~~~~~l~s~~-~d~~i~ 92 (293)
|...+..++|+|+|++|++++.+ +.|.+|+++... +....+ ....+......+++ ++ +.|++++ .++.+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-g~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~ 123 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-GTLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSIT 123 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-TEEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-CcEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEE
Confidence 56778889999999999999886 899999987531 122222 23334445666666 43 4455554 689999
Q ss_pred EEeCCCCeeeee----eee-----------cCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccce------eeeecccc
Q 022716 93 LWDARSGKCSQQ----AEL-----------SGENINITYKPDGTHIAVGN-RDDELTILDVRKFKP------IHRRKFGY 150 (293)
Q Consensus 93 vwd~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~------~~~~~~~~ 150 (293)
+|++........ ... ..++.+++|+|+|++++++. .++.+.+|++..... +... .
T Consensus 124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~---~ 200 (361)
T 3scy_A 124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK---G 200 (361)
T ss_dssp EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE---E
T ss_pred EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec---c
Confidence 999875432211 111 11236799999999776665 478999999865331 1100 0
Q ss_pred eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-CCCcEEEEeCCCCEE--EEEeec---cCCCeeEEEEccCC
Q 022716 151 EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLC--VRTFTK---LEWPVRTISFSHTG 224 (293)
Q Consensus 151 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~--~~~~~~---~~~~v~~l~~sp~~ 224 (293)
... ............++|+|+++++++++ .++.|.+||+.++.. +..+.. +...+..++|+|+|
T Consensus 201 ~~~----------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg 270 (361)
T 3scy_A 201 TPE----------AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG 270 (361)
T ss_dssp EEE----------EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS
T ss_pred ccc----------ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC
Confidence 000 01112233456789999999876666 689999999987643 222322 23456899999999
Q ss_pred CEEEEecC--CCcEEEEEcC--CCC--EEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 225 DYIASASE--DLFIDISNVH--TGR--TVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 225 ~~l~s~s~--d~~i~iw~~~--~~~--~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
++|+++.. ++.|.+|++. +++ .+..+.....++.++|+|++++|++++.+. +.+++|.++
T Consensus 271 ~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~-------~~v~v~~~d 336 (361)
T 3scy_A 271 KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT-------NVIQIFERD 336 (361)
T ss_dssp SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT-------TEEEEEEEC
T ss_pred CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC-------CCEEEEEEE
Confidence 99866654 5889999985 455 334444445688999999999999988542 345555443
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.1e-21 Score=181.54 Aligned_cols=246 Identities=12% Similarity=0.165 Sum_probs=181.3
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 101 (293)
.|.+++|||||++|++++. +.|++||+........ ..+..|...+..++|+|++ +.|+.++ ++.|.+||+.+++.
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQ 184 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCE
Confidence 4889999999999999886 9999999975410011 2355677889999999985 5666666 56999999998876
Q ss_pred eeeeeecCc-----------------eEEEEEcCCCCEEEEEeCCC---------------------------------e
Q 022716 102 SQQAELSGE-----------------NINITYKPDGTHIAVGNRDD---------------------------------E 131 (293)
Q Consensus 102 ~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~d~---------------------------------~ 131 (293)
......... +..++|+|||++|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 544332221 35689999999999988765 7
Q ss_pred EEEEEccc-cceeeee---cccceeeeeEEecCCCEEEEecC---------------CC---------------CEEEEE
Q 022716 132 LTILDVRK-FKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG---------------NA---------------GCYCIA 177 (293)
Q Consensus 132 i~l~d~~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~---------------~~---------------~~~~~~ 177 (293)
+.+||+.+ .+..... .....+..+.| |+++.+.+... .. .+..++
T Consensus 265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 343 (741)
T 2ecf_A 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR 343 (741)
T ss_dssp EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence 88899887 6544332 23456788899 98886664321 00 123678
Q ss_pred ECCCCCEEEEecCCCcEEEEeCC-CCEEEEEeeccCCCeeEE-EEccCCCEEE-EecCCC--cEEEEEcCC-CCEEEEEe
Q 022716 178 IDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFTKLEWPVRTI-SFSHTGDYIA-SASEDL--FIDISNVHT-GRTVHQIP 251 (293)
Q Consensus 178 ~~~~~~~l~~gs~d~~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~sp~~~~l~-s~s~d~--~i~iw~~~~-~~~~~~~~ 251 (293)
|+|+++++++++.|+.++||.+. .+. ...+..+...+..+ .|+|+|+.|+ +++.|+ .++||++.. +..+..+.
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 99999999999999988888764 344 67788888888887 5999998775 555555 899999864 55566666
Q ss_pred cCCCcceeEECCCCCeEEEEEcC
Q 022716 252 CRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 252 ~~~~i~~~~~sp~~~~la~~~~d 274 (293)
....+..++|||++++|+....+
T Consensus 423 ~~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 423 KAPGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp CSCSEEEEEECTTSSEEEEEEEE
T ss_pred cCCCceEEEECCCCCEEEEEecC
Confidence 56678899999999998877544
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=2.8e-21 Score=185.38 Aligned_cols=273 Identities=11% Similarity=0.060 Sum_probs=194.2
Q ss_pred ceeecCccccE-------EEEEECCCCCeEEEEeCC----C--cEEEeecCCCCCCc-----------------------
Q 022716 13 SREYTGHKKKV-------HSVAWNCTGTKLASGSVD----Q--TARVWHIEPHGHGK----------------------- 56 (293)
Q Consensus 13 ~~~~~~h~~~v-------~~l~~s~~~~~l~s~~~d----g--~v~iw~~~~~~~~~----------------------- 56 (293)
.+.+++|...+ .+++|+|||+.+++++.+ + .|.+|++.......
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 46678898888 999999999977777755 3 46666653211000
Q ss_pred ----------------------eeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC-CeeeeeeeecCceEE
Q 022716 57 ----------------------VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-GKCSQQAELSGENIN 113 (293)
Q Consensus 57 ----------------------~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~ 113 (293)
.....+.+|...+.++.|+++ .++++++.|+.+++|.+.. +.....+..+.....
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~ 249 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP 249 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcce
Confidence 001223567788888899875 5777888899999997643 222222323334456
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEccccceeeeecc------------cceeeeeEEe-cCCCEEEEecC-----------
Q 022716 114 ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF------------GYEVNEIAWN-MTGEMFFLTTG----------- 169 (293)
Q Consensus 114 ~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~------------~~~~~~v~~~-~~~~~~~~~~~----------- 169 (293)
.+|+|||+.++.+ .++.+.+||+...... .... ...+..+.|+ |++..+.....
T Consensus 250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~ 327 (1045)
T 1k32_A 250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT 327 (1045)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS
T ss_pred eeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC
Confidence 7999999999887 4899999998443222 2111 1247788999 88875543321
Q ss_pred --------CC-CEEEEEECCCCCEEEEecCCCcEE-EEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEE
Q 022716 170 --------NA-GCYCIAIDPMGRYFAVGSADSLVS-LWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDIS 239 (293)
Q Consensus 170 --------~~-~~~~~~~~~~~~~l~~gs~d~~i~-iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw 239 (293)
.. .+..++|+ +++.++.++.++.+. +||+..+... .+..+...+..++|+|+|++|++++.++.|++|
T Consensus 328 ~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 328 YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 12 46678899 999999998888898 9999877544 445777889999999999999999999999999
Q ss_pred EcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCC--CCCCCCcceEEEEeee
Q 022716 240 NVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDK--NKYQADEGVFRIYGFE 291 (293)
Q Consensus 240 ~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~--~~~~~~~~~~~~~~~~ 291 (293)
|+.+++..... .+...+.+++|||+|++||+++.++ ....+....+++|+++
T Consensus 406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 99999877666 4556789999999999999998754 1111233566777654
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=2.6e-21 Score=185.58 Aligned_cols=257 Identities=11% Similarity=0.083 Sum_probs=186.5
Q ss_pred eeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
+.+.+|...+.++.|+++ ..+++++.|+.+++|.++.... .. ..+..|. .+...+|+|++. .|+.+ .++.|.+
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-~~--~~l~~~~-~~~~~~~SpDG~-~la~~-~~~~i~~ 269 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-DL--RKHTSFT-DYYPRHLNTDGR-RILFS-KGGSIYI 269 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-SC--EECCCCC-SSCEEEEEESSS-CEEEE-ETTEEEE
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-cc--eEecCCC-CcceeeEcCCCC-EEEEE-eCCEEEE
Confidence 345789999999999988 6667888899999998764221 11 2344444 356678999764 45554 4899999
Q ss_pred EeCCCCeeeeeeee------------cCceEEEEEc-CCCCEEEEEeCCCeEEEEEccccceeeeecccc-eeeeeEEec
Q 022716 94 WDARSGKCSQQAEL------------SGENINITYK-PDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-EVNEIAWNM 159 (293)
Q Consensus 94 wd~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~-~~~~v~~~~ 159 (293)
||+...... .+.. ...+..++|+ |||+.+++++ ++.+.+|++............. .+..+.|+
T Consensus 270 ~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s- 346 (1045)
T 1k32_A 270 FNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD- 346 (1045)
T ss_dssp ECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-
T ss_pred ecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-
Confidence 998544332 2221 1246789999 9999999887 8899999987665443322222 44455555
Q ss_pred CCCEEE---------------------EecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEE
Q 022716 160 TGEMFF---------------------LTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTI 218 (293)
Q Consensus 160 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l 218 (293)
++..+. +..+...+..++|+|++++|++++.++.|++||+.+++.......|...+.++
T Consensus 347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 347 TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 426 (1045)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence 332211 12233567889999999999999999999999999988777666888899999
Q ss_pred EEccCCCEEEEecCCC----------cEEEEEcCCCCEEEEE-ecCCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 219 SFSHTGDYIASASEDL----------FIDISNVHTGRTVHQI-PCRAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 219 ~~sp~~~~l~s~s~d~----------~i~iw~~~~~~~~~~~-~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
+|||||++|++++.++ .|++||+.+++ +..+ .+...+..++|+|+|++|++++.+.....|+
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999998887654 89999999877 4444 3445678899999999999998866544433
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.89 E-value=7.3e-22 Score=178.13 Aligned_cols=223 Identities=13% Similarity=0.053 Sum_probs=160.3
Q ss_pred cccEEEEEECCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeC---CCeEEEE
Q 022716 20 KKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASG---DKTVRLW 94 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~---d~~i~vw 94 (293)
..+|.+++|+|||++||+++. ||+++||+++.. . ...+..|. ..+..+.|+|+ .++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g---~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG---E--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT---E--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC---C--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEE
Confidence 568999999999999999887 999999998531 2 23344555 57899999986 57777765 5556666
Q ss_pred eCCC---CeeeeeeeecCceEEEEEcCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 95 DARS---GKCSQQAELSGENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 95 d~~~---~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
.+.. +... .+.........+|+|+|+. +++...++...+||+.+.+...... +.
T Consensus 94 ~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~---------------------~~ 151 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR---------------------LP 151 (582)
T ss_dssp EEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE---------------------ES
T ss_pred EEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec---------------------CC
Confidence 5432 2222 2222223335688888864 3344445555699987755332211 01
Q ss_pred CCEEEEEECCCCCEEEEecCC----CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCC--cEEEEEcCCC
Q 022716 171 AGCYCIAIDPMGRYFAVGSAD----SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDL--FIDISNVHTG 244 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~--~i~iw~~~~~ 244 (293)
. .+++++|||+++++++.+ +.|++||+.+++.. .+..+...+..++|||||++|+++..++ .|++||..++
T Consensus 152 ~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 152 G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 1 467889999999988777 78999999887644 6677888899999999999999888888 8999999988
Q ss_pred CEEEEEe-cCCCcceeE--------ECCCCCeEEEEEcCC
Q 022716 245 RTVHQIP-CRAAMNSVE--------WNPKYNLLAYAGDDK 275 (293)
Q Consensus 245 ~~~~~~~-~~~~i~~~~--------~sp~~~~la~~~~d~ 275 (293)
+.. .+. +...+..++ |+|+|.++++++.|+
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g 267 (582)
T 3o4h_A 229 SVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG 267 (582)
T ss_dssp CEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT
T ss_pred cEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCC
Confidence 876 443 334567777 999998888888775
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=6.6e-21 Score=156.15 Aligned_cols=209 Identities=17% Similarity=0.172 Sum_probs=151.3
Q ss_pred EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC-Ceeeeeeeec--CceEE
Q 022716 37 SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-GKCSQQAELS--GENIN 113 (293)
Q Consensus 37 s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~--~~~~~ 113 (293)
+++.|++|++||+... . ...+..|...|.+++|+|++ ..|++++ ++.|.+||+.+ ++........ ..+.+
T Consensus 17 ~~~~~~~i~~~d~~~~---~--~~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR---K--MRVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND 89 (297)
T ss_dssp -CCCCEEEEEEETTTT---E--EEEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred CCCcceeEEEEeCCCC---c--eeeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence 4677999999998743 2 22455688899999999975 5677665 88999999988 7665544333 34567
Q ss_pred EEEcCCCCEEEEEe--CCCeEEEEEc--cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEE-Ee
Q 022716 114 ITYKPDGTHIAVGN--RDDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA-VG 188 (293)
Q Consensus 114 ~~~~~~~~~l~~~~--~d~~i~l~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g 188 (293)
++|+|+++++++++ .++...+|.+ .+.... .. .....+..++|+|+++.++ ++
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~---------------------~~~~~~~~~~~spdg~~l~~~~ 147 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LM---------------------TKNLPSYWHGWSPDGKSFTYCG 147 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-EC---------------------CSSSSEEEEEECTTSSEEEEEE
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-Ee---------------------ecCCCccceEECCCCCEEEEEE
Confidence 89999999999998 3345555544 332211 10 1122356788999999877 77
Q ss_pred cCCCcEEEEeC--CCCEEEEEeeccCCCeeEEEEccCCCEEEEec-CCCcEEEEEcC-CCCEEEEEe-cCCCcceeEECC
Q 022716 189 SADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSHTGDYIASAS-EDLFIDISNVH-TGRTVHQIP-CRAAMNSVEWNP 263 (293)
Q Consensus 189 s~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~-~~~~~~~~~-~~~~i~~~~~sp 263 (293)
+.++.+++|++ ..+. ...+..+...+.+++|+|+|++|+.++ .|+.+.+|++. .+..+..+. +...+..++|+|
T Consensus 148 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~ 226 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP 226 (297)
T ss_dssp EETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT
T ss_pred CCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC
Confidence 88999999985 3443 455667778899999999999887666 58999999986 445555543 334678899999
Q ss_pred CCCeEEEEEcCC
Q 022716 264 KYNLLAYAGDDK 275 (293)
Q Consensus 264 ~~~~la~~~~d~ 275 (293)
++++|++++.++
T Consensus 227 dg~~l~~~~~~~ 238 (297)
T 2ojh_A 227 SGDKVVFVSYDA 238 (297)
T ss_dssp TSSEEEEEEEET
T ss_pred CCCEEEEEEcCC
Confidence 999999998764
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=7.2e-22 Score=182.37 Aligned_cols=240 Identities=9% Similarity=0.060 Sum_probs=158.2
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC---CeeEEEEcCCCCCEEEEEeCC---------
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGD--------- 88 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~~l~s~~~d--------- 88 (293)
..+.+++|+|||+++++ +.||+|++||+..... ...+.+|.. .|.+++|+|++ +.|++++.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~----~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS----TVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC----EEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE----EEEeccccccccccceEEECCCC-CEEEEEecCccceeecce
Confidence 35788999999997766 7899999999975321 123445543 48999999985 567777664
Q ss_pred CeEEEEeCCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc-e-------------
Q 022716 89 KTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-E------------- 151 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~-~------------- 151 (293)
+.+.+||+.+++......... .+..++|+|||+.|+.++. +.|.+||+.+....+....+. .
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 788899999887532222222 2567899999999999885 799999998765544332211 1
Q ss_pred -----eeeeEEecCCCEEEEecCC-----------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee
Q 022716 152 -----VNEIAWNMTGEMFFLTTGN-----------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 209 (293)
Q Consensus 152 -----~~~v~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~ 209 (293)
+..+.|+|++..+.....+ ..+..+.+.++|.. ..+..|.+||+.+++....+.
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCCCEECC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC----CCeeEEEEEECCCCceeEEee
Confidence 1334454444433332211 01122222222221 112379999998876545555
Q ss_pred cc------CCCeeEEEEccCCCEEEEecC----CCcEEEEEcCCCCEEEEEe--cCCCc----ceeEECCCCCeEEEE
Q 022716 210 KL------EWPVRTISFSHTGDYIASASE----DLFIDISNVHTGRTVHQIP--CRAAM----NSVEWNPKYNLLAYA 271 (293)
Q Consensus 210 ~~------~~~v~~l~~sp~~~~l~s~s~----d~~i~iw~~~~~~~~~~~~--~~~~i----~~~~~sp~~~~la~~ 271 (293)
.+ ...+..++|||||++|++.+. +..|++||..+++....+. ....+ ..++|+|+|+.|++.
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 43 557899999999999877643 3679999999988665443 22334 389999999988876
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.3e-21 Score=170.20 Aligned_cols=212 Identities=13% Similarity=0.131 Sum_probs=149.2
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-----------ee-----eeeeeecCceEEEEEcCCCCEEE----EE
Q 022716 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSG-----------KC-----SQQAELSGENINITYKPDGTHIA----VG 126 (293)
Q Consensus 67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~l~----~~ 126 (293)
..++.+++++. ..++++++.|+ +++|+...- .. ...+.....+.+++|+|+|++|+ ++
T Consensus 37 ~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 35678888886 46788888887 888864210 10 01122345688999999999999 67
Q ss_pred eCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCCEEE
Q 022716 127 NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCV 205 (293)
Q Consensus 127 ~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~ 205 (293)
+.|+.+++||+++...... .....+.. ......+...+.+++|+|+ +.+|++++.||+|++||++++..+
T Consensus 115 s~d~~v~iwd~~~~~~~~~-~~~~~~~~--------~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAK-QQKRPFAY--------HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTC-SSCCCSEE--------EECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred CCCceEEEEEccccccCCc-CCcceeee--------eeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 7899999999876410000 00000000 0111234567889999998 789999999999999999998777
Q ss_pred EEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------CCcceeEECCCCCeEEEEEc-CCC
Q 022716 206 RTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------AAMNSVEWNPKYNLLAYAGD-DKN 276 (293)
Q Consensus 206 ~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------~~i~~~~~sp~~~~la~~~~-d~~ 276 (293)
....+|...|.+++|+|+|++|++|+.|+.|++||.+ ++....+... ..+.+++|++++.++++.+. ++.
T Consensus 186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 6677788899999999999999999999999999998 5555544321 16889999998877765443 322
Q ss_pred CCCCCcceEEEEeeec
Q 022716 277 KYQADEGVFRIYGFEN 292 (293)
Q Consensus 277 ~~~~~~~~~~~~~~~~ 292 (293)
+.....+++|.+.+
T Consensus 265 --~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 265 --LETSPDVVMALLPK 278 (434)
T ss_dssp --SSSCCEEEEEECCC
T ss_pred --cCCCCceEEEEecc
Confidence 22334577887764
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=3.5e-20 Score=155.03 Aligned_cols=224 Identities=11% Similarity=0.037 Sum_probs=163.1
Q ss_pred cEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeC---CcCCeeEEEEcCCCCCEEEEEe-----------
Q 022716 22 KVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATAS----------- 86 (293)
Q Consensus 22 ~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~---h~~~i~~~~~~~~~~~~l~s~~----------- 86 (293)
.+.+++|+|+|+.+ ++++.++.|.+||+.... ....+.... |...+..++|+|++ +.++++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--TLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--EEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--eEeeEEcCCcccccccccceEECCCC-CEEEEEeccccccccccc
Confidence 48899999999876 556668999999987532 222222221 12256788999975 4566664
Q ss_pred -CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEE-
Q 022716 87 -GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF- 164 (293)
Q Consensus 87 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 164 (293)
.++.|.+||+.+++....+.....+..++|+|+|++++++ ++.+.+||+++.+.......+.....+.|++++..+
T Consensus 112 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 189 (337)
T 1pby_B 112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW 189 (337)
T ss_dssp ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred ccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence 5799999999988877776666667789999999988888 689999999887765444332211122333333211
Q ss_pred ---------------------------------------------EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeC
Q 022716 165 ---------------------------------------------FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDI 199 (293)
Q Consensus 165 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~ 199 (293)
....+...+..++++|++++++++ ++.|.+||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~ 267 (337)
T 1pby_B 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL 267 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence 111223346679999999999888 789999999
Q ss_pred CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716 200 SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR 253 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~ 253 (293)
++++.+..+.. ...+.+++|+|+|++|++++.++.|.+||..+++.+..++..
T Consensus 268 ~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 268 EKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99987776653 346789999999999999999999999999999988877643
No 149
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=7.8e-20 Score=153.29 Aligned_cols=227 Identities=15% Similarity=0.233 Sum_probs=152.7
Q ss_pred eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-CeEEEEeCC--CCeee--eeeeec
Q 022716 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-KTVRLWDAR--SGKCS--QQAELS 108 (293)
Q Consensus 34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-~~i~vwd~~--~~~~~--~~~~~~ 108 (293)
.+++++.|+.|++|+++.. +.........|...+..++|+|++ +.|++++.+ +.|.+|++. +++.. ..+...
T Consensus 7 l~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHE--GALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTT--SCEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEeCCCCCeEEEEEECCC--CcEEEeeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 3455578999999999642 222223334567778899999975 556666665 999999997 55432 334444
Q ss_pred CceEEEEEcCCCCEEEEEeC-CCeEEEEEcccc---ceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE
Q 022716 109 GENINITYKPDGTHIAVGNR-DDELTILDVRKF---KPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY 184 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (293)
..+..++|+|+++++++++. ++.+.+||+... ..... ......+.+++++|++++
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---------------------~~~~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV---------------------VEGLDGCHSANISPDNRT 142 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE---------------------ECCCTTBCCCEECTTSSE
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccc---------------------ccCCCCceEEEECCCCCE
Confidence 56778999999998877765 889999998421 11111 112234567889999998
Q ss_pred EEEec-CCCcEEEEeCCC-CEEEE----Eeec-cCCCeeEEEEccCCCEEEE-ecCCCcEEEEEcCC--CCE--EEEEe-
Q 022716 185 FAVGS-ADSLVSLWDISE-MLCVR----TFTK-LEWPVRTISFSHTGDYIAS-ASEDLFIDISNVHT--GRT--VHQIP- 251 (293)
Q Consensus 185 l~~gs-~d~~i~iwd~~~-~~~~~----~~~~-~~~~v~~l~~sp~~~~l~s-~s~d~~i~iw~~~~--~~~--~~~~~- 251 (293)
+++++ .++.|.+||+.+ +.... .+.. ....+..++|+|++++++. +..++.|.+|++.. ++. .....
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~ 222 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM 222 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc
Confidence 77776 899999999986 54321 2222 2347889999999997754 45889999999953 433 22222
Q ss_pred --c----CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 252 --C----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 252 --~----~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
. ...+..++|+|++++|++++.. .+.+++|+++
T Consensus 223 ~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-------~~~i~v~d~~ 261 (343)
T 1ri6_A 223 MPENFSDTRWAADIHITPDGRHLYACDRT-------ASLITVFSVS 261 (343)
T ss_dssp SCTTCCSCCCEEEEEECTTSSEEEEEETT-------TTEEEEEEEC
T ss_pred cCccccccCCccceEECCCCCEEEEEecC-------CCEEEEEEEc
Confidence 1 1134479999999988766532 2456666654
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=8.3e-21 Score=165.16 Aligned_cols=202 Identities=12% Similarity=0.126 Sum_probs=145.6
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCC-------CC-Ccee---EEEeeCCcCCeeEEEEcCCCCCEEE----E
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH-------GH-GKVK---DIELRGHADSVDQLCWDPKHADLIA----T 84 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~-------~~-~~~~---~~~~~~h~~~i~~~~~~~~~~~~l~----s 84 (293)
...+..+++++++.++++|+.|+ +++|+.... .. .... ......|...|.+++|+|++ .+|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CEEEEEEec
Confidence 34688999999999999999988 899865310 00 0000 00112356779999999975 5666 8
Q ss_pred EeCCCeEEEEeCCCC--------eee---eeee-ecCceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccce
Q 022716 85 ASGDKTVRLWDARSG--------KCS---QQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYE 151 (293)
Q Consensus 85 ~~~d~~i~vwd~~~~--------~~~---~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~ 151 (293)
++.|+.|++||+.++ +.. ..+. +...+.+++|+|+ +..|++++.|+++++||+++......
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~------ 187 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA------ 187 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE------
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee------
Confidence 889999999998654 111 1111 3456889999998 78999999999999999987532211
Q ss_pred eeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-------CCeeEEEEccCC
Q 022716 152 VNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-------WPVRTISFSHTG 224 (293)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-------~~v~~l~~sp~~ 224 (293)
...+...+.+++|+|++++|++|+.||+|++||++ +.....+..+. ..|.+++|++++
T Consensus 188 --------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 188 --------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp --------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred --------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 11234567899999999999999999999999998 44444444332 378999999999
Q ss_pred CEEEEe-cCCC------cEEEEEcCCC
Q 022716 225 DYIASA-SEDL------FIDISNVHTG 244 (293)
Q Consensus 225 ~~l~s~-s~d~------~i~iw~~~~~ 244 (293)
.++++. +.|| .+++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 887543 3443 3889998764
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=5.7e-20 Score=169.31 Aligned_cols=241 Identities=16% Similarity=0.181 Sum_probs=171.4
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-----------------CCeeEEEEcCCCCCEEEEE
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-----------------DSVDQLCWDPKHADLIATA 85 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-----------------~~i~~~~~~~~~~~~l~s~ 85 (293)
+..+.|. |+.+++++.|+ | +||+....... . .+..|. ..|.+++|+|+ ..++++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~-~--~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQ-T--TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC--------C--EEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEee-E--EeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-
Confidence 4557777 77888888888 8 99987543200 1 111222 46899999997 545544
Q ss_pred eCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc-----cceeeeecccce---------
Q 022716 86 SGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK-----FKPIHRRKFGYE--------- 151 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~-----~~~~~~~~~~~~--------- 151 (293)
.++.+++||+.+++..........+..++|+|||+.++.+ .++.|.+||+.+ .+..+....+..
T Consensus 99 -~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp -ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred -ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 4599999999988766555555566778999999999985 689999999987 655443333222
Q ss_pred ------eeeeEEecCCCEEEEec---------------------------------C-----------------------
Q 022716 152 ------VNEIAWNMTGEMFFLTT---------------------------------G----------------------- 169 (293)
Q Consensus 152 ------~~~v~~~~~~~~~~~~~---------------------------------~----------------------- 169 (293)
+..+.|+|++..+.... .
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 47889999988766543 0
Q ss_pred CCCEEEEEECCCCCEEEEecCCC-----cEEEEeCCCCEEEEEee-c-cCC---CeeEEEEcc--CCCEEEEecCCCcEE
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEMLCVRTFT-K-LEW---PVRTISFSH--TGDYIASASEDLFID 237 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~-----~i~iwd~~~~~~~~~~~-~-~~~---~v~~l~~sp--~~~~l~s~s~d~~i~ 237 (293)
...+.+++|+|+++.|++++.++ .|.+||+.++.....+. . +.. .+..++|+| +|+++++++.|+.+.
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 12356789999999999987775 89999999883333332 2 221 346789999 999999999999999
Q ss_pred EEEcC-CCCEEEEEec-CCCcce-eEECCCCCeEEEEEcC
Q 022716 238 ISNVH-TGRTVHQIPC-RAAMNS-VEWNPKYNLLAYAGDD 274 (293)
Q Consensus 238 iw~~~-~~~~~~~~~~-~~~i~~-~~~sp~~~~la~~~~d 274 (293)
||.+. ++..+..+.. ...+.. ++|+|+++.|++++.+
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 99886 5666666643 334665 7999999988887765
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=2.4e-20 Score=172.15 Aligned_cols=269 Identities=11% Similarity=0.090 Sum_probs=164.5
Q ss_pred eeecCccc---cEEEEEECCCCCeEEEEeCC---------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCE
Q 022716 14 REYTGHKK---KVHSVAWNCTGTKLASGSVD---------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL 81 (293)
Q Consensus 14 ~~~~~h~~---~v~~l~~s~~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~ 81 (293)
+.+.+|.. .|.+++|||||++|++++.+ +.+.+||++.... .......+|...+..++|+|++ +.
T Consensus 51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG-~~ 127 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSLDPPEVSNAKLQYAGWGPKG-QQ 127 (723)
T ss_dssp EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EECCCTTCCSCCCSBCCBCSST-TC
T ss_pred EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce--EeccCCccccccccccEECCCC-CE
Confidence 34445554 49999999999999999875 7788999975421 1111122455558889999986 45
Q ss_pred EEEEeCCCeEEEEeCCCCeeeeeeeec-C------------------ceEEEEEcCCCCEEEEEeCCC-eEEEEEccccc
Q 022716 82 IATASGDKTVRLWDARSGKCSQQAELS-G------------------ENINITYKPDGTHIAVGNRDD-ELTILDVRKFK 141 (293)
Q Consensus 82 l~s~~~d~~i~vwd~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~l~~~~~d~-~i~l~d~~~~~ 141 (293)
|+.++. +.|++||+.+++........ . ....++|+|||+.|++++.++ .+.+|++....
T Consensus 128 la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~ 206 (723)
T 1xfd_A 128 LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT 206 (723)
T ss_dssp EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence 666665 79999999888765443321 1 125799999999999987553 34444432111
Q ss_pred e-----eeeecc------cceeeeeEEecCCCE--EEEecC------CCCEEEEEECCCCCEEEEecC----CCcEEEEe
Q 022716 142 P-----IHRRKF------GYEVNEIAWNMTGEM--FFLTTG------NAGCYCIAIDPMGRYFAVGSA----DSLVSLWD 198 (293)
Q Consensus 142 ~-----~~~~~~------~~~~~~v~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~l~~gs~----d~~i~iwd 198 (293)
. .....+ ........|+..... ..+..+ ...+..++|+|+|+++++.+. +..|.+||
T Consensus 207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 0 000000 001122233332211 112211 345678999999998877643 35799999
Q ss_pred CCCCEEEEEeecc-CCCe----eEEEEccCCCEEEE--ecCCC------cEEEEEc-CCCCE--EEEEec-CCCcce-eE
Q 022716 199 ISEMLCVRTFTKL-EWPV----RTISFSHTGDYIAS--ASEDL------FIDISNV-HTGRT--VHQIPC-RAAMNS-VE 260 (293)
Q Consensus 199 ~~~~~~~~~~~~~-~~~v----~~l~~sp~~~~l~s--~s~d~------~i~iw~~-~~~~~--~~~~~~-~~~i~~-~~ 260 (293)
+.+++....+..+ ...+ ..++|+|||+.|+. +..|+ .|++||. .++.. ...+.. ...+.. ++
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~ 366 (723)
T 1xfd_A 287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (723)
T ss_dssp TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence 9988766555433 3333 37899999997765 44666 4777773 33331 333332 233444 69
Q ss_pred ECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 261 WNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 261 ~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
|+|+++.|++.+.+. ..+..+||.++
T Consensus 367 ~spdg~~l~~~~~~~-----~~~~~~l~~~~ 392 (723)
T 1xfd_A 367 YDEKGNKIYFLSTED-----LPRRRQLYSAN 392 (723)
T ss_dssp EETTTTEEEEEESSS-----CTTCCEEEEEC
T ss_pred EcCCCCEEEEEEcCC-----CCcceEEEEEe
Confidence 999999998887652 11345666653
No 153
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=4.3e-19 Score=150.99 Aligned_cols=245 Identities=11% Similarity=0.144 Sum_probs=161.6
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeE-EEeeCCcCCeeEEEEcCCCCC-EEEEEe-----------
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHAD-LIATAS----------- 86 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~-~l~s~~----------- 86 (293)
...+..++|+|+|++|++++.+ .|.+|+++.. +.... .....+ +....++++|++.. +++++.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~--g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSP--TEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEET--TEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCC--CCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 3468899999999999999888 9999998621 12211 111111 22445788887543 345553
Q ss_pred --CCCeEEEEeCC-CCeeeeeee-----ecCceEEEEEcCCCCEEEEEeC-CCeEEEEEcc-ccceeeeecccceeeeeE
Q 022716 87 --GDKTVRLWDAR-SGKCSQQAE-----LSGENINITYKPDGTHIAVGNR-DDELTILDVR-KFKPIHRRKFGYEVNEIA 156 (293)
Q Consensus 87 --~d~~i~vwd~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~-~~~~~~~~~~~~~~~~v~ 156 (293)
.++.+.+|++. .++...... ....+..++|+|||++++++.. ++.|.+||+. +.+..... .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~-------~~~ 187 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-------SVD 187 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-------EEE
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee-------eEe
Confidence 68999999997 455443332 2346778999999998887764 6899999987 43321110 000
Q ss_pred EecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCC--CCEEE---EEeecc-------CC------CeeE
Q 022716 157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDIS--EMLCV---RTFTKL-------EW------PVRT 217 (293)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~--~~~~~---~~~~~~-------~~------~v~~ 217 (293)
...+...+..++|+|+++++++++. ++.|.+|++. +++.. ..+... .. .+..
T Consensus 188 ---------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 258 (365)
T 1jof_A 188 ---------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp ---------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred ---------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence 0011334678899999998877664 7899999764 45432 222211 11 4789
Q ss_pred EE-EccCCCEEEEecCC-C-----cEEEEEcC-CCCEEE---EEe-cCCCcceeEECC---CCCeEEEEEcCCCCCCCCc
Q 022716 218 IS-FSHTGDYIASASED-L-----FIDISNVH-TGRTVH---QIP-CRAAMNSVEWNP---KYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 218 l~-~sp~~~~l~s~s~d-~-----~i~iw~~~-~~~~~~---~~~-~~~~i~~~~~sp---~~~~la~~~~d~~~~~~~~ 282 (293)
++ |+|||++|++++.+ . .|.+|++. +++... ... .......++|+| ++++|++++.+ .
T Consensus 259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-------~ 331 (365)
T 1jof_A 259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------E 331 (365)
T ss_dssp EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-------S
T ss_pred EEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-------C
Confidence 99 99999998776543 2 89999996 566443 133 234578899999 89999999865 2
Q ss_pred ceEEEEeee
Q 022716 283 GVFRIYGFE 291 (293)
Q Consensus 283 ~~~~~~~~~ 291 (293)
+.++||+++
T Consensus 332 ~~v~v~~~~ 340 (365)
T 1jof_A 332 GWLEIYRWK 340 (365)
T ss_dssp CEEEEEEEE
T ss_pred CeEEEEEEc
Confidence 567777665
No 154
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=3.3e-19 Score=152.40 Aligned_cols=269 Identities=12% Similarity=0.062 Sum_probs=176.0
Q ss_pred ccceeecCccccEEE-----EEECCCCCeEEEEeC-CCc--EEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEE
Q 022716 11 LHSREYTGHKKKVHS-----VAWNCTGTKLASGSV-DQT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82 (293)
Q Consensus 11 ~~~~~~~~h~~~v~~-----l~~s~~~~~l~s~~~-dg~--v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l 82 (293)
...+.++.|...... .+|||||++|+.++. +|. |.+||++.. ... ....++...+..+.|+|++ +.|
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~~~-~lt~~~~~~~~~~~~spdg-~~l 95 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---VAT-QLTEGRGDNTFGGFLSPDD-DAL 95 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---EEE-ECCCSSCBCSSSCEECTTS-SEE
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---ceE-EeeeCCCCCccceEEcCCC-CEE
Confidence 345667777776766 899999999998887 775 666676532 221 1233455555567899975 577
Q ss_pred EEEeCCCeEEEEeCCCCeeeeeeeecCceE---EEEEcCCCCEEEEEe----------------------CCCeEEEEEc
Q 022716 83 ATASGDKTVRLWDARSGKCSQQAELSGENI---NITYKPDGTHIAVGN----------------------RDDELTILDV 137 (293)
Q Consensus 83 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~----------------------~d~~i~l~d~ 137 (293)
+.++.++.+.+||+.+++.......+.... ...++|+++.++... .+..|.+||+
T Consensus 96 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ 175 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL 175 (388)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET
T ss_pred EEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEEC
Confidence 788889999999999988766555544422 234589999887432 3467999999
Q ss_pred cccceeeeecccceeeeeEEec-CCCEEEEecCC----------------------------CCEEEEEECCCCCEEEEe
Q 022716 138 RKFKPIHRRKFGYEVNEIAWNM-TGEMFFLTTGN----------------------------AGCYCIAIDPMGRYFAVG 188 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~l~~g 188 (293)
.+.+..........+..+.|+| ++..+.+.... ..+...+|+|+|+.|+..
T Consensus 176 ~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 176 KTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEE
Confidence 8876554444444567788888 66554432210 024567899999977654
Q ss_pred cCC-----CcEEEEeCCCCEEE--EEeeccC---CCeeEEEEccCCCEEEEe---------cCCCcEEEEEcCCCCEEEE
Q 022716 189 SAD-----SLVSLWDISEMLCV--RTFTKLE---WPVRTISFSHTGDYIASA---------SEDLFIDISNVHTGRTVHQ 249 (293)
Q Consensus 189 s~d-----~~i~iwd~~~~~~~--~~~~~~~---~~v~~l~~sp~~~~l~s~---------s~d~~i~iw~~~~~~~~~~ 249 (293)
+.+ ..|.+||+.+++.. ..+.++. .....++|+|||+.|+.. ..+..|++||..+++....
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV 335 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEE
T ss_pred ecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe
Confidence 432 23999999887632 2222210 012224799999988754 4567899999988765333
Q ss_pred EecCC-----------CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 250 IPCRA-----------AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 250 ~~~~~-----------~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
..... .+..++|+|+|+.|++++... +..+||-++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------g~~~l~~~~ 381 (388)
T 3pe7_A 336 ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------GKPALYLAT 381 (388)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-------SSCEEEEEE
T ss_pred ccccCcccccccccccCCCCccCCCCCCEEEEEecCC-------CceeEEEEE
Confidence 33333 478899999999999988542 445677665
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=9.1e-20 Score=164.45 Aligned_cols=227 Identities=12% Similarity=0.048 Sum_probs=165.2
Q ss_pred eeecCcc-ccEEEEEECCCCCeEEEEeC---CCcEEEeecCC--CCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC
Q 022716 14 REYTGHK-KKVHSVAWNCTGTKLASGSV---DQTARVWHIEP--HGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 14 ~~~~~h~-~~v~~l~~s~~~~~l~s~~~---dg~v~iw~~~~--~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
+.++.|. ..+..++|+|| +.+++++. +...++|.++. .... . .+.... .+...+|+|++..++++.+.
T Consensus 57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~--~--~l~~~~-~~~~~~~s~dg~~~~~~s~~ 130 (582)
T 3o4h_A 57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE--Q--RLEAVK-PMRILSGVDTGEAVVFTGAT 130 (582)
T ss_dssp EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC--E--ECTTSC-SBEEEEEEECSSCEEEEEEC
T ss_pred EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc--c--cccCCC-CceeeeeCCCCCeEEEEecC
Confidence 4455666 68999999999 77777765 56677876653 2211 1 222222 23355777776565555555
Q ss_pred CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC----CeEEEEEccccceeeeecccceeeeeEEecCCCE
Q 022716 88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEM 163 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (293)
++.+.+||+.+++......... .+++|+|||+.++.++.+ ..|.+||+.+.+...
T Consensus 131 ~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~------------------- 189 (582)
T 3o4h_A 131 EDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV------------------- 189 (582)
T ss_dssp SSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-------------------
T ss_pred CCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-------------------
Confidence 5555699999887665554444 788999999999988876 789999987655332
Q ss_pred EEEecCCCCEEEEEECCCCCEEEEecCCC--cEEEEeCCCCEEEEEeeccCCCeeEEE--------EccCCCEEEEecCC
Q 022716 164 FFLTTGNAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLCVRTFTKLEWPVRTIS--------FSHTGDYIASASED 233 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~gs~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~--------~sp~~~~l~s~s~d 233 (293)
+..+...+..++|+|||+.|+++..++ .|++||+.+++.. .+..+...+..++ |+|||..+++++.|
T Consensus 190 --l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 266 (582)
T 3o4h_A 190 --FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE 266 (582)
T ss_dssp --ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred --eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence 122334456789999999999888888 8999999988776 6777777777777 99999889999999
Q ss_pred CcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 234 LFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 234 ~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
+.+++|++ ++... .....+.+++|+ ++.++++++.+.
T Consensus 267 g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~ 303 (582)
T 3o4h_A 267 GRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLS 303 (582)
T ss_dssp TEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETT
T ss_pred CcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCC
Confidence 99999999 55443 233568899999 899888888764
No 156
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=2.9e-18 Score=143.38 Aligned_cols=200 Identities=12% Similarity=0.113 Sum_probs=147.6
Q ss_pred EcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccce-eeeecccce
Q 022716 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKP-IHRRKFGYE 151 (293)
Q Consensus 74 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~-~~~~~~~~~ 151 (293)
|.+....++++++.++.|++||..+++.............++|+|+|+++++++. ++.+.+||+.+... ......+..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 84 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS 84 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC
Confidence 4444455688889999999999999988776665444448999999997777665 88999999988776 555544555
Q ss_pred eee-eEEecCCCEEEEecCC-----------------------CCEEEEEECCCCCEE-EEecCCCc-EEEEeCCCCEEE
Q 022716 152 VNE-IAWNMTGEMFFLTTGN-----------------------AGCYCIAIDPMGRYF-AVGSADSL-VSLWDISEMLCV 205 (293)
Q Consensus 152 ~~~-v~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l-~~gs~d~~-i~iwd~~~~~~~ 205 (293)
... +.|++++..++..... .....++++|+++++ ++...++. |.+|++.....+
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~ 164 (331)
T 3u4y_A 85 SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVL 164 (331)
T ss_dssp CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCE
T ss_pred CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcE
Confidence 555 8888888766643332 123578999999854 55566688 999998753222
Q ss_pred ----EEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCCCE---EEEEecCCCcceeEECCCCCeEEEEEc
Q 022716 206 ----RTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGRT---VHQIPCRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 206 ----~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~~~---~~~~~~~~~i~~~~~sp~~~~la~~~~ 273 (293)
.........+..++|+|+|+++ +++..++.|.+||..+++. +..+.....+..++|+|+++++++++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECS
T ss_pred eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEc
Confidence 1222334568999999999965 5556789999999999887 777877778899999999997776654
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=3.6e-18 Score=143.87 Aligned_cols=214 Identities=13% Similarity=0.110 Sum_probs=162.3
Q ss_pred cCCeeEEEEcCCCCCEEEEEeC-------CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEc
Q 022716 66 ADSVDQLCWDPKHADLIATASG-------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDV 137 (293)
Q Consensus 66 ~~~i~~~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~ 137 (293)
...+..++++|++. .++.++. ++.|.+||..+++....+.....+..++++|+|+.++++. .++.+.+||+
T Consensus 40 ~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 34577889999754 4445543 6789999999998888777777788899999999666554 5799999999
Q ss_pred cccceeeeecccc----------eeeeeEEecCCCEEEEec-C-C---------------------CCEEEEEECCCCCE
Q 022716 138 RKFKPIHRRKFGY----------EVNEIAWNMTGEMFFLTT-G-N---------------------AGCYCIAIDPMGRY 184 (293)
Q Consensus 138 ~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~-~-~---------------------~~~~~~~~~~~~~~ 184 (293)
++.+.......+. .+..+.|++++..+++.. . . ..+..++++|++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8887766554422 257788999887666544 1 1 11345788999999
Q ss_pred EEEecCCCcEEEEeCCCCEEEEEeec----cCCCeeEEEEccCCCEEEEec-CCCcEEEEEcCCCCEEEEEecCCCccee
Q 022716 185 FAVGSADSLVSLWDISEMLCVRTFTK----LEWPVRTISFSHTGDYIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSV 259 (293)
Q Consensus 185 l~~gs~d~~i~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~i~~~ 259 (293)
+++++.++.|.+||..+++....+.. +...+..++|+|+|++++.++ .++.|.+||..+++.+..+....+ ..+
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 277 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAV 277 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCE
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceE
Confidence 99999999999999999988777654 344678899999999776665 559999999999998887775544 679
Q ss_pred EECCCCCeEEEEE-cCCCCCCCC
Q 022716 260 EWNPKYNLLAYAG-DDKNKYQAD 281 (293)
Q Consensus 260 ~~sp~~~~la~~~-~d~~~~~~~ 281 (293)
+|+|+++++.+++ .++.+++++
T Consensus 278 ~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 278 LFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEE
Confidence 9999999766665 455444444
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=173.05 Aligned_cols=239 Identities=12% Similarity=0.100 Sum_probs=151.3
Q ss_pred EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC---CeeEEEEcCCCCCEEEEEeC---------CCeEE
Q 022716 25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASG---------DKTVR 92 (293)
Q Consensus 25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~---~i~~~~~~~~~~~~l~s~~~---------d~~i~ 92 (293)
+++|+|+|++ +..+.|+.|++||+.... .. ..+.+|.. .+.+++|+|++ +.|++++. ++.|+
T Consensus 20 ~~~~s~dg~~-~~~~~d~~i~~~~~~~g~---~~-~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEY-LHQSADNNIVLYNIETGQ---SY-TILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEE-EEECTTSCEEEEESSSCC---EE-EEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeE-EEEcCCCCEEEEEcCCCc---EE-EEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEE
Confidence 7899999954 445569999999997532 11 12333332 38899999985 56666665 78999
Q ss_pred EEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716 93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
+||+.+++..........+..++|+|||+.|+.+. ++.|.+||+.+....+....+... ..++-....+.-......
T Consensus 94 ~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~--~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 94 IYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN--KIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp EEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT--TEEESSCCHHHHHHTTCS
T ss_pred EEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC--CeEcccccceeeeecccC
Confidence 99999987632122345567799999999999885 789999999876543322111100 000000000000000011
Q ss_pred EEEEEECCCCCEEEEecCCC----------------------------------cEEEEeCCCCEEE---E-----Eeec
Q 022716 173 CYCIAIDPMGRYFAVGSADS----------------------------------LVSLWDISEMLCV---R-----TFTK 210 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~----------------------------------~i~iwd~~~~~~~---~-----~~~~ 210 (293)
..+++|+|||+.|++++.|. .|++||+.++... . .+.+
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 13567778887777766542 7889999876531 1 1235
Q ss_pred cCCCeeEEEEccCCCEEEEecC--C--CcEEEEE----cCCCCEEEEE-----ecCCCcc-----eeEECCCCCeEEEEE
Q 022716 211 LEWPVRTISFSHTGDYIASASE--D--LFIDISN----VHTGRTVHQI-----PCRAAMN-----SVEWNPKYNLLAYAG 272 (293)
Q Consensus 211 ~~~~v~~l~~sp~~~~l~s~s~--d--~~i~iw~----~~~~~~~~~~-----~~~~~i~-----~~~~sp~~~~la~~~ 272 (293)
+...+..++||||++++++... + ..|.+|| ..+++....+ .+...+. .+.|+|+|+.|+...
T Consensus 251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 6678999999999988777442 2 3488899 7666543222 2344566 889999999777643
No 159
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=7.4e-18 Score=142.04 Aligned_cols=218 Identities=12% Similarity=0.175 Sum_probs=146.9
Q ss_pred cCccccEEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCce-eEEEeeC-------CcCCeeEEEEcCCCCCEEEEEeC
Q 022716 17 TGHKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKV-KDIELRG-------HADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 17 ~~h~~~v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~-~~~~~~~-------h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
..|...+..++|+|+|++|++++ .++.|++|++........ ......+ +...+..++|+|++. ++++...
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~ 160 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG 160 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC
Confidence 34667889999999999998888 689999999964322111 1111111 123478899999876 8877778
Q ss_pred CCeEEEEeCC-CCeeeee--eee--cCceEEEEEcCCCCEEEEE-eCCCeEEEEEccc--cceeeeecccceeeeeEEec
Q 022716 88 DKTVRLWDAR-SGKCSQQ--AEL--SGENINITYKPDGTHIAVG-NRDDELTILDVRK--FKPIHRRKFGYEVNEIAWNM 159 (293)
Q Consensus 88 d~~i~vwd~~-~~~~~~~--~~~--~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~--~~~~~~~~~~~~~~~v~~~~ 159 (293)
++.|.+|++. +++.... ... ...+..++|+|||+++++. ..++.+.+|++.. ....... .+...+
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-------~~~~~~ 233 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG-------IVKTIP 233 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE-------EEESSC
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee-------eeeecC
Confidence 9999999998 4543322 121 2256679999999976664 5688999999874 2211100 000000
Q ss_pred CCCEEEEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCC---CCEEEEEeeccCCCeeEEEEccCCCEEEEecC-CC
Q 022716 160 TGEMFFLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS---EMLCVRTFTKLEWPVRTISFSHTGDYIASASE-DL 234 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~-d~ 234 (293)
.+ ......+..++|+|++++| ++...++.|.+|++. ....+..+..+...+..++|+|+|++|++++. ++
T Consensus 234 ~~-----~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 234 AD-----YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp TT-----CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred CC-----CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence 00 0011346789999999977 566678999999987 33555566665667899999999998887765 58
Q ss_pred cEEEE--EcCCCCEE
Q 022716 235 FIDIS--NVHTGRTV 247 (293)
Q Consensus 235 ~i~iw--~~~~~~~~ 247 (293)
.+.+| |..+++..
T Consensus 309 ~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 309 NATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred cEEEEEEeCCCCeEE
Confidence 89999 55566654
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=2.5e-18 Score=144.48 Aligned_cols=222 Identities=9% Similarity=0.026 Sum_probs=153.0
Q ss_pred cEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcCCCCCEEEEEeCC-------
Q 022716 22 KVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASGD------- 88 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~~~~~~l~s~~~d------- 88 (293)
.+..++|+|+|+.++ ++..++.|.+||+.... ....+.. .+ ...+..++|+|++ +.+++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~--~~~~~~~-~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~ 119 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANL-SSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDH 119 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEES-CCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--EEEEEEc-ccccccccccccceEECCCC-CEEEEEcccccccccc
Confidence 578999999998664 55678999999987431 1112222 22 2236788999975 566666654
Q ss_pred -----CeEEEEeCCCCeee---eeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc----------
Q 022716 89 -----KTVRLWDARSGKCS---QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY---------- 150 (293)
Q Consensus 89 -----~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~---------- 150 (293)
+.|.+||+.+++.. ........+.+++|+|+|+ +++++ +.+.+||+++.+.......+.
T Consensus 120 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
T 1jmx_B 120 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPD 196 (349)
T ss_dssp EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCB
T ss_pred cccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcc
Confidence 89999999875432 2333444567788999999 66654 349999998877655443321
Q ss_pred ---------------eeeeeEEecCC---------------------C--EEEEecCCCCEEEEEECC-CCCEEEEecCC
Q 022716 151 ---------------EVNEIAWNMTG---------------------E--MFFLTTGNAGCYCIAIDP-MGRYFAVGSAD 191 (293)
Q Consensus 151 ---------------~~~~v~~~~~~---------------------~--~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d 191 (293)
....+.+.+++ . .+........+..++++| ++++++++ +
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~ 274 (349)
T 1jmx_B 197 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--L 274 (349)
T ss_dssp CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--E
T ss_pred ceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--c
Confidence 11222222211 0 000111223567889999 99999888 8
Q ss_pred CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716 192 SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR 253 (293)
Q Consensus 192 ~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~ 253 (293)
+.|.+||+++++.+..+.. ...+..++|+|+|++|++++.++.|.+||..+++.+..++..
T Consensus 275 ~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 275 NRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 8999999999987776653 345789999999999988888999999999999888877644
No 161
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=9e-17 Score=131.74 Aligned_cols=241 Identities=11% Similarity=0.129 Sum_probs=168.6
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEe----eCCcCCeeEEEEcCCCCCEEEEEeC-CCeEE
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL----RGHADSVDQLCWDPKHADLIATASG-DKTVR 92 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~----~~h~~~i~~~~~~~~~~~~l~s~~~-d~~i~ 92 (293)
+|-..+.+++++++|+.+++...++.|++||.+.. ....... .+|...+..+++.+.++.++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 45568999999999998888888999999997521 1111111 1344567888884334456665533 89999
Q ss_pred EEeCCCCeeeeeeee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 93 LWDARSGKCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 93 vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
+|| .+++....+.. ...+..+++.|+|+.+++...++.|.+||... +....... ....
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~------------------~~~~ 163 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGC------------------SKHL 163 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEEC------------------TTTC
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCC------------------CCcc
Confidence 999 45555544432 23567899999999888777789999999643 21111100 0122
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCC-cEEEEEcCCCCEE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDL-FIDISNVHTGRTV 247 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~-~i~iw~~~~~~~~ 247 (293)
..+..++++|+++++++...++.|.+||.. +..+..+... ...+..++++|+|+++++...++ .|.+|+. +++.+
T Consensus 164 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~ 241 (286)
T 1q7f_A 164 EFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLI 241 (286)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred CCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEE
Confidence 346789999999988888889999999974 4445555433 25789999999999998888886 9999995 56666
Q ss_pred EEEecCC---CcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 248 HQIPCRA---AMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 248 ~~~~~~~---~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
..+.... .+..++++|+++++++ +.| +.++||++..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~--------~~v~v~~~~~ 280 (286)
T 1q7f_A 242 SALESKVKHAQCFDVALMDDGSVVLA-SKD--------YRLYIYRYVQ 280 (286)
T ss_dssp EEEEESSCCSCEEEEEEETTTEEEEE-ETT--------TEEEEEECSC
T ss_pred EEEcccCCCCcceeEEECCCCcEEEE-CCC--------CeEEEEEccc
Confidence 6664332 3568999999987776 444 4678887643
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=8.1e-18 Score=155.88 Aligned_cols=241 Identities=10% Similarity=0.126 Sum_probs=156.1
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCC-----eeEEEEcCCCCCEEEEEeCC-------
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-----VDQLCWDPKHADLIATASGD------- 88 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~-----i~~~~~~~~~~~~l~s~~~d------- 88 (293)
....+++|+|||.+++++ ||+|++||+.... . ...+.+|... ...+.|+|++ +.|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGN---S-SVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCC---E-EEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSC
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCc---e-EEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEEc
Confidence 346689999999888886 9999999997542 1 2234555432 2347889985 566667665
Q ss_pred --CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccc----------------
Q 022716 89 --KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY---------------- 150 (293)
Q Consensus 89 --~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~---------------- 150 (293)
+.+.+||+.++++.......+.....+|+|||+.|+.+. ++.|.+||+.+....+....+.
T Consensus 90 ~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 90 YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred cceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 556799999998765444456678899999999998884 7899999987765443222111
Q ss_pred ---eeeeeEEecCCCEEEEecCCC---CEE----------------EEEECCCCCEEEEecCCCcEEEEeCCC---C---
Q 022716 151 ---EVNEIAWNMTGEMFFLTTGNA---GCY----------------CIAIDPMGRYFAVGSADSLVSLWDISE---M--- 202 (293)
Q Consensus 151 ---~~~~v~~~~~~~~~~~~~~~~---~~~----------------~~~~~~~~~~l~~gs~d~~i~iwd~~~---~--- 202 (293)
....+.|+|+|..+.....+. ... .+.+.+.|.. ..+.+|++||+.+ +
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNA 244 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCC
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcc
Confidence 112366777777655443111 111 1222222211 1122688899988 6
Q ss_pred EEEEEee------ccCCCeeEEEEccCCCEEEEec----CCCcEEEEEcCCCC----E--EEE---EecCCCcc-----e
Q 022716 203 LCVRTFT------KLEWPVRTISFSHTGDYIASAS----EDLFIDISNVHTGR----T--VHQ---IPCRAAMN-----S 258 (293)
Q Consensus 203 ~~~~~~~------~~~~~v~~l~~sp~~~~l~s~s----~d~~i~iw~~~~~~----~--~~~---~~~~~~i~-----~ 258 (293)
... .+. ++...+..++|+|||+.++... .+..|.+||..+++ . +.. -.+...+. .
T Consensus 245 ~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 245 TSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE 323 (740)
T ss_dssp CEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred eEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence 333 333 2666799999999999766542 34579999999887 1 111 22333344 7
Q ss_pred eEECCCCCeEE-EEEcC
Q 022716 259 VEWNPKYNLLA-YAGDD 274 (293)
Q Consensus 259 ~~~sp~~~~la-~~~~d 274 (293)
..|+|||+.|+ ..+.+
T Consensus 324 p~fspDG~~l~~~~s~~ 340 (740)
T 4a5s_A 324 PHFTLDGNSFYKIISNE 340 (740)
T ss_dssp CEECTTSSEEEEEEECT
T ss_pred ceEcCCCCEEEEEEEcC
Confidence 89999999888 66643
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.80 E-value=1.9e-16 Score=132.71 Aligned_cols=248 Identities=11% Similarity=0.036 Sum_probs=168.1
Q ss_pred cccEEEEEECCCCCeEEEEeCC------------------------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEc
Q 022716 20 KKKVHSVAWNCTGTKLASGSVD------------------------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD 75 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~d------------------------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 75 (293)
-+.+.+++++|+|+.+++.+.+ +.|.+||.+.. ........++......+++.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d 99 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---EILQSSGKNLFYLPHGLSID 99 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---CEEEEECTTTCSSEEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---eEEeccCCCccCCceEEEEC
Confidence 3689999999999999888877 47899987542 22221122445568899999
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCCe-eeeeeee----------cCceEEEEEcC-CCCEEEEEe-CCCeEEEEEccccce
Q 022716 76 PKHADLIATASGDKTVRLWDARSGK-CSQQAEL----------SGENINITYKP-DGTHIAVGN-RDDELTILDVRKFKP 142 (293)
Q Consensus 76 ~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~~~----------~~~~~~~~~~~-~~~~l~~~~-~d~~i~l~d~~~~~~ 142 (293)
|++ .++++...++.|++||..... .+..+.. -..+..++++| ++..+++.+ .++.|.+||... ..
T Consensus 100 ~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~ 177 (329)
T 3fvz_A 100 TDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KF 177 (329)
T ss_dssp TTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CE
T ss_pred CCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CE
Confidence 875 588888889999999986542 2222211 12467899999 788888876 689999999433 32
Q ss_pred eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC-CCEEEEecCCCcEEEEeCCCCEEEEEee--ccCCCeeEEE
Q 022716 143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFT--KLEWPVRTIS 219 (293)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~ 219 (293)
........ .+.. .....-.....++++|+ +.++++...++.|++||..+++.+..+. .+...+.+++
T Consensus 178 ~~~~~~~g---------~~~~-~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 178 VTQWGEES---------SGSS-PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEEECEEC---------CSSS-CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEEeccCC---------CCCC-CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 22211000 0000 00000023568999998 7888888889999999998887777764 3456788999
Q ss_pred EccCCCEEEEe-------cCCCcEEEEEcCCCCEEEEEe----cCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEE
Q 022716 220 FSHTGDYIASA-------SEDLFIDISNVHTGRTVHQIP----CRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIY 288 (293)
Q Consensus 220 ~sp~~~~l~s~-------s~d~~i~iw~~~~~~~~~~~~----~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~ 288 (293)
|+| +..+++. ..+..|++|+..+++.+..+. .-.....|+++|+|+++++...++ .+++|
T Consensus 248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~--------~I~~~ 318 (329)
T 3fvz_A 248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN--------TVWKF 318 (329)
T ss_dssp EET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC--------CEEEE
T ss_pred ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC--------EEEEE
Confidence 999 4434333 445589999999999888774 233477899999997777766553 45556
Q ss_pred eee
Q 022716 289 GFE 291 (293)
Q Consensus 289 ~~~ 291 (293)
+++
T Consensus 319 ~~~ 321 (329)
T 3fvz_A 319 TLT 321 (329)
T ss_dssp EEE
T ss_pred eCC
Confidence 554
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=1.7e-17 Score=141.84 Aligned_cols=243 Identities=10% Similarity=0.020 Sum_probs=156.5
Q ss_pred EEEEEECCCCCeEEEEeCC-C--cEEEeecCCCCCCceeEEEeeCCcCC-eeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 23 VHSVAWNCTGTKLASGSVD-Q--TARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~d-g--~v~iw~~~~~~~~~~~~~~~~~h~~~-i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
+.+++|||||++|+....+ + .|.+|++... .. ..+..+... ...+.|+|++ +.|+.++.++.+.+||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---~~--~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---QA--VQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---EE--EECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC---cE--EEeecCCCCccccceECCCC-CEEEEEEcCCcEEEEECCC
Confidence 7788999999998877543 3 6777777542 21 223333333 3336789975 5777888888999999988
Q ss_pred CeeeeeeeecCceE-E-------------------EEEcCCCCEEEEE-----eCCCeEEEEEccccceeeeecccceee
Q 022716 99 GKCSQQAELSGENI-N-------------------ITYKPDGTHIAVG-----NRDDELTILDVRKFKPIHRRKFGYEVN 153 (293)
Q Consensus 99 ~~~~~~~~~~~~~~-~-------------------~~~~~~~~~l~~~-----~~d~~i~l~d~~~~~~~~~~~~~~~~~ 153 (293)
++.......+.... . +.++|+++.++.. ..+..+.+||+.+.+..........+.
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~ 191 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLG 191 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccc
Confidence 87654444322211 1 2456777766554 356689999998766544443444566
Q ss_pred eeEEec-CCCEEEEecC----------------------------CCCEEEEEECCCCCEEEEecCC-----CcEEEEeC
Q 022716 154 EIAWNM-TGEMFFLTTG----------------------------NAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDI 199 (293)
Q Consensus 154 ~v~~~~-~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~ 199 (293)
.+.|+| ++..+.+... ...+..++|+|+++.|+.++.+ +.|.+||+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 677777 4443322111 0124567999999987776544 44999999
Q ss_pred CCCEEEEEeeccCCCeeEEEEcc-CCCEEEEec----------------CCCcEEEEEcCCCCEEEEEecCC--------
Q 022716 200 SEMLCVRTFTKLEWPVRTISFSH-TGDYIASAS----------------EDLFIDISNVHTGRTVHQIPCRA-------- 254 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~s~s----------------~d~~i~iw~~~~~~~~~~~~~~~-------- 254 (293)
.++.... +.... ... +.|+| +|+++++++ .+..|++||..+++.........
T Consensus 272 ~~g~~~~-l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (396)
T 3c5m_A 272 ETLENEE-VMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD 348 (396)
T ss_dssp TTCCEEE-EEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB
T ss_pred CCCCeEE-eeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccc
Confidence 8775433 22222 233 88999 999888764 34779999998876433222222
Q ss_pred ---CcceeEECCCCCeEEEEEcC
Q 022716 255 ---AMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 255 ---~i~~~~~sp~~~~la~~~~d 274 (293)
.+..+.|+|+++.|++++.+
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~ 371 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDF 371 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECT
T ss_pred ccCCCCCceEccCCCeEEEEecC
Confidence 25678999999999998864
No 165
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=3.5e-16 Score=132.54 Aligned_cols=226 Identities=14% Similarity=0.149 Sum_probs=145.9
Q ss_pred ccccEEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCc-ee-EEEeeC--------CcCCeeEEEEcCCCCCEEEEEeC
Q 022716 19 HKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGK-VK-DIELRG--------HADSVDQLCWDPKHADLIATASG 87 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~-~~-~~~~~~--------h~~~i~~~~~~~~~~~~l~s~~~ 87 (293)
+......+++ ++++|++++ .++.|.+|++....... .. .....+ +...+..++|+|++..++++...
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 175 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG 175 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence 4556778888 888887776 58999999997532211 11 111111 12345789999986546666666
Q ss_pred CCeEEEEeCCCCee------e------e--eeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceeeeeccccee
Q 022716 88 DKTVRLWDARSGKC------S------Q--QAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEV 152 (293)
Q Consensus 88 d~~i~vwd~~~~~~------~------~--~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~~~~~~~~~ 152 (293)
++.|.+|++..... + . .......+..++|+|+|+++++.. .++++.+||+++........
T Consensus 176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~----- 250 (361)
T 3scy_A 176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT----- 250 (361)
T ss_dssp TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE-----
T ss_pred CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE-----
Confidence 89999998865431 1 1 112234567899999999888777 58999999987543211110
Q ss_pred eeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC--CCcEEEEeCC--CCE--EEEEeeccCCCeeEEEEccCCCE
Q 022716 153 NEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA--DSLVSLWDIS--EML--CVRTFTKLEWPVRTISFSHTGDY 226 (293)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~--d~~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~sp~~~~ 226 (293)
+... ..+......++|+|++++|+++.. ++.|.+|++. ++. .+..+.. ...+..++|+|+|++
T Consensus 251 --~~~~--------~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~ 319 (361)
T 3scy_A 251 --VAAD--------TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKY 319 (361)
T ss_dssp --EESC--------SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCE
T ss_pred --EecC--------CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCE
Confidence 0000 011233568999999998866655 4899999985 333 3444444 557889999999998
Q ss_pred EEEec-CCCcEEEEE--cCCCCEEEEE--ecCCCcceeEEC
Q 022716 227 IASAS-EDLFIDISN--VHTGRTVHQI--PCRAAMNSVEWN 262 (293)
Q Consensus 227 l~s~s-~d~~i~iw~--~~~~~~~~~~--~~~~~i~~~~~s 262 (293)
|++++ .++.|.+|. ..+++..... .....+.+|.|.
T Consensus 320 l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 320 LLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 88877 678899964 4566654322 122357788875
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=2.6e-17 Score=150.52 Aligned_cols=241 Identities=9% Similarity=-0.023 Sum_probs=160.0
Q ss_pred cceeecCccccEEEEEECCCCCeEEEE--eCCCcEEEeecCCCCCCceeEEEeeCCcCCee---------EEEEc--CCC
Q 022716 12 HSREYTGHKKKVHSVAWNCTGTKLASG--SVDQTARVWHIEPHGHGKVKDIELRGHADSVD---------QLCWD--PKH 78 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~---------~~~~~--~~~ 78 (293)
..+.+.+|...+..++|+++.-.+++. +.++..+||..... +. ...+..|...+. ...|+ |++
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg 90 (662)
T 3azo_A 15 DAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GA--EESALPAPWNVRNRVFEYSGFPWAGVPRPAG 90 (662)
T ss_dssp CHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SC--EEESSCTTCCBCCCGGGTCCCCEEEECCSSS
T ss_pred CHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CC--cceeCCCCccccccccccCCccceeeeecCC
Confidence 345577899999999999876666766 55889999986432 12 224455554544 45554 887
Q ss_pred CC-EEEEEeCCCeEEEEeCC--C-Ceeeeeee-----ecCceEEEEEcCCCCEEEEEeCC----------CeEEEEEccc
Q 022716 79 AD-LIATASGDKTVRLWDAR--S-GKCSQQAE-----LSGENINITYKPDGTHIAVGNRD----------DELTILDVRK 139 (293)
Q Consensus 79 ~~-~l~s~~~d~~i~vwd~~--~-~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d----------~~i~l~d~~~ 139 (293)
.. ++++...+..|.++++. . +....... .......++|+|||+.|+.++.+ ..|.+||+.+
T Consensus 91 ~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 91 GPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp SCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred CeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 65 45444446777777776 3 44322222 12345678999999999998876 5788999876
Q ss_pred ------cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC--------CcEEEEeCC-CC--
Q 022716 140 ------FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD--------SLVSLWDIS-EM-- 202 (293)
Q Consensus 140 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d--------~~i~iwd~~-~~-- 202 (293)
........ .+...+..++|+|||++|+.++.+ ..|.+||+. ++
T Consensus 171 ~~~~~~~~~~~l~~--------------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 171 SAAADRSAVRELSD--------------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp TTTTCGGGSEESSC--------------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred CccccCCceeEEEe--------------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 33221110 112233457789999998877754 379999998 56
Q ss_pred -EEEEEeeccCCCeeEEEEccCCCEEEEecCCC--cEEEEEcCCCCEEEEEecCCC---------cceeEECCCCCeEEE
Q 022716 203 -LCVRTFTKLEWPVRTISFSHTGDYIASASEDL--FIDISNVHTGRTVHQIPCRAA---------MNSVEWNPKYNLLAY 270 (293)
Q Consensus 203 -~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~--~i~iw~~~~~~~~~~~~~~~~---------i~~~~~sp~~~~la~ 270 (293)
........+...+..++|+|||+++++++.|+ .|++|+..+++.......... +..++|+|++.++++
T Consensus 231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 43333344567899999999999888888888 566667666664433332221 467899999998888
Q ss_pred EEcCCCC
Q 022716 271 AGDDKNK 277 (293)
Q Consensus 271 ~~~d~~~ 277 (293)
++. +..
T Consensus 311 ~~~-~~~ 316 (662)
T 3azo_A 311 HGK-GAA 316 (662)
T ss_dssp EBS-SSC
T ss_pred EEc-Ccc
Confidence 875 433
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=158.23 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=146.9
Q ss_pred EEEEEECCCCCeEEEEeC---------CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 23 VHSVAWNCTGTKLASGSV---------DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~---------dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
|.+++|||||++|++++. |+.|++||++........ .+ ...+..++|+|++. .|+.+. ++.|++
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~ 134 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--EL---PRPIQYLCWSPVGS-KLAYVY-QNNIYL 134 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CC---CSSBCCEEECSSTT-CEEEEE-TTEEEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce--ec---CcccccceECCCCC-EEEEEE-CCeEEE
Confidence 899999999999998876 799999999753210001 11 24588899999865 555554 789999
Q ss_pred EeCCCCeeeeeeeec-------------------CceEEEEEcCCCCEEEEEeCCC------------------------
Q 022716 94 WDARSGKCSQQAELS-------------------GENINITYKPDGTHIAVGNRDD------------------------ 130 (293)
Q Consensus 94 wd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~d~------------------------ 130 (293)
||+.+++........ +....++|+|||+.|+.++.|.
T Consensus 135 ~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y 214 (719)
T 1z68_A 135 KQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY 214 (719)
T ss_dssp ESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred EeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence 999887654322111 1114799999999999988652
Q ss_pred ----------eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC----CcEEE
Q 022716 131 ----------ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD----SLVSL 196 (293)
Q Consensus 131 ----------~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d----~~i~i 196 (293)
++.+||+.+............ ..+..+...+..++|+|+++++++.... ..|.+
T Consensus 215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~ 282 (719)
T 1z68_A 215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP------------AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSI 282 (719)
T ss_dssp CBTTSCCCEEEEEEEESSCHHHHCCEECCCC------------HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCccceeEccCC------------ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEE
Confidence 455555544332100000000 0001233456788999998877774432 24888
Q ss_pred Ee----CCCCEEEEEe----eccCCCee-----EEEEccCCCEEEE--ecCCC--cEEEEEcCCCCEEEEEec-CCCcce
Q 022716 197 WD----ISEMLCVRTF----TKLEWPVR-----TISFSHTGDYIAS--ASEDL--FIDISNVHTGRTVHQIPC-RAAMNS 258 (293)
Q Consensus 197 wd----~~~~~~~~~~----~~~~~~v~-----~l~~sp~~~~l~s--~s~d~--~i~iw~~~~~~~~~~~~~-~~~i~~ 258 (293)
|| ..+++....+ ..+...+. .+.|+|||+.++. ...++ .|++|+..+++ ...+.. ...+..
T Consensus 283 ~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~ 361 (719)
T 1z68_A 283 CDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAIN 361 (719)
T ss_dssp EEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEE
T ss_pred EcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEE
Confidence 99 7776654444 35666666 8899999996544 44555 46777776666 333332 334667
Q ss_pred eEECCCCCeEEEEEcC
Q 022716 259 VEWNPKYNLLAYAGDD 274 (293)
Q Consensus 259 ~~~sp~~~~la~~~~d 274 (293)
+.++ +++.|++.+.+
T Consensus 362 ~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 362 IFRV-TQDSLFYSSNE 376 (719)
T ss_dssp EEEE-CSSEEEEEESC
T ss_pred EEEE-eCCEEEEEEec
Confidence 7766 88888777754
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=6.6e-16 Score=131.09 Aligned_cols=243 Identities=10% Similarity=0.127 Sum_probs=155.8
Q ss_pred eecCccccEEEEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEeeC----CcCCeeEEEEcCCCCC
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRG----HADSVDQLCWDPKHAD 80 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~----h~~~i~~~~~~~~~~~ 80 (293)
.+..+..+ .++|+|||++|.++. .++.|.+||.... .....+.+.. +......++++|++ +
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spdg-~ 120 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTDG-K 120 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTTS-S
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCCC-C
Confidence 34444444 899999999998876 3678999998643 2222233221 12345678899985 4
Q ss_pred EEEEEeC--CCeEEEEeCCCCeeeee-eeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccc-cceeeee------ccc
Q 022716 81 LIATASG--DKTVRLWDARSGKCSQQ-AELSGENINITYKPDG-THIAVGNRDDELTILDVRK-FKPIHRR------KFG 149 (293)
Q Consensus 81 ~l~s~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~-~~~~~~~------~~~ 149 (293)
+|+.+.. ++.|.+||+.+++.... +...+. ..+.+.|++ ..+++.+.|+++.++++.. .+..... ..+
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~ 199 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVK 199 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTT
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCC
Confidence 5665553 68999999999877665 443332 234566765 5677777888888888754 2221000 000
Q ss_pred cee---------eeeEE-ecCCCEEEEecCC-----------------------CCEEEEEECCCCCEEEEecC------
Q 022716 150 YEV---------NEIAW-NMTGEMFFLTTGN-----------------------AGCYCIAIDPMGRYFAVGSA------ 190 (293)
Q Consensus 150 ~~~---------~~v~~-~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~gs~------ 190 (293)
... ..+.+ +..+....+.... ....-++++|+++.+.++..
T Consensus 200 ~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~ 279 (361)
T 2oiz_A 200 DDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEG 279 (361)
T ss_dssp TSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTT
T ss_pred CCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcc
Confidence 000 00000 0111111111000 00112678899777665432
Q ss_pred -----CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC--CEEEEE-ecCCCcceeEEC
Q 022716 191 -----DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG--RTVHQI-PCRAAMNSVEWN 262 (293)
Q Consensus 191 -----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~--~~~~~~-~~~~~i~~~~~s 262 (293)
.+.|.+||+++++.+.++..+. +.+++|+|+|++|++++. +.|.+||..++ +.+..+ ......+.++++
T Consensus 280 ~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~ 356 (361)
T 2oiz_A 280 THKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH 356 (361)
T ss_dssp CTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred cccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence 3589999999999999887776 899999999999998887 99999999999 888876 445567889999
Q ss_pred CCCC
Q 022716 263 PKYN 266 (293)
Q Consensus 263 p~~~ 266 (293)
|+|.
T Consensus 357 p~G~ 360 (361)
T 2oiz_A 357 PVGG 360 (361)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 9985
No 169
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=6.2e-15 Score=121.45 Aligned_cols=229 Identities=12% Similarity=0.097 Sum_probs=161.7
Q ss_pred eeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 14 REYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
+.+..+.....+++|+|+|+ .++++..++.|..|+.+.. . ..+..+...+..++++|++ .++++...++.|.
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~--~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----L--SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLE 93 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----E--EEEESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----e--EEEECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence 44556667889999999998 6788888999999998642 2 2344566778999999864 5777766678999
Q ss_pred EEeCCCCeeeeeeee-c----CceEEEEEcCCCCEEEEEeC-----------------CCeEEEEEccccceeeeecccc
Q 022716 93 LWDARSGKCSQQAEL-S----GENINITYKPDGTHIAVGNR-----------------DDELTILDVRKFKPIHRRKFGY 150 (293)
Q Consensus 93 vwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~l~~~~~-----------------d~~i~l~d~~~~~~~~~~~~~~ 150 (293)
+||..+++....... . ..+..++++|+|+.+++.+. .+.|..++..
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------------ 161 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------------ 161 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------------
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC------------
Confidence 999987765433221 1 12346889999998887321 2344444432
Q ss_pred eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-CCEE---EEEeeccCCCeeEEEEccCCCE
Q 022716 151 EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLC---VRTFTKLEWPVRTISFSHTGDY 226 (293)
Q Consensus 151 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-~~~~---~~~~~~~~~~v~~l~~sp~~~~ 226 (293)
+....+.........++++|+++.+++.+.++.|.+|++. ++.. ...+..+...+..+++.++|++
T Consensus 162 ----------g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 162 ----------GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLI 231 (296)
T ss_dssp ----------SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCE
T ss_pred ----------CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCE
Confidence 1111222233445678999999988888888999999986 4433 2333233456778999999997
Q ss_pred EEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEE-CCCCCeEEEEEcC
Q 022716 227 IASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEW-NPKYNLLAYAGDD 274 (293)
Q Consensus 227 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~-sp~~~~la~~~~d 274 (293)
.++. ++.|.+|+.. ++.+..+.....+.+++| +|+++.|.+++.+
T Consensus 232 ~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 232 WASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp EEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETT
T ss_pred EEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCC
Confidence 7766 7889999986 777777665444899999 6899888888765
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=3.1e-15 Score=127.06 Aligned_cols=235 Identities=11% Similarity=0.037 Sum_probs=146.9
Q ss_pred EEEEeC--CCcEEEeecCCCCCCceeEEEe-e-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC-CCeeeeeeee--
Q 022716 35 LASGSV--DQTARVWHIEPHGHGKVKDIEL-R-GHADSVDQLCWDPKHADLIATASGDKTVRLWDAR-SGKCSQQAEL-- 107 (293)
Q Consensus 35 l~s~~~--dg~v~iw~~~~~~~~~~~~~~~-~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~-- 107 (293)
|+.|+. ++.|.+|+++... +....+.. . +....+..++++|++ ++|++++.+ .|.+|++. +++.......
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~-g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEK-LTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTT-TEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEccCCCcEEEEEEECCC-CCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 444544 2567777765321 22222211 1 233467789999975 577788877 99999997 7765443332
Q ss_pred cCceEEEEEcCCCCE--EEEEe-------------CCCeEEEEEccc-cceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 108 SGENINITYKPDGTH--IAVGN-------------RDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 108 ~~~~~~~~~~~~~~~--l~~~~-------------~d~~i~l~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
.+.+..++++|+|++ ++++. .++.+.+|++.. .+...... .+. .....
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~------~~~----------~~~~~ 145 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ------NYE----------YQENT 145 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE------EEE----------CCTTC
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe------eEE----------eCCCC
Confidence 244556889999995 44442 688999999863 22211100 000 01234
Q ss_pred CEEEEEECCCCCEEEEec-CCCcEEEEeCC-CCEEE--EEee--ccCCCeeEEEEccCCCEEEEec-CCCcEEEEEcC--
Q 022716 172 GCYCIAIDPMGRYFAVGS-ADSLVSLWDIS-EMLCV--RTFT--KLEWPVRTISFSHTGDYIASAS-EDLFIDISNVH-- 242 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~-~~~~~--~~~~--~~~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~-- 242 (293)
.+..++++|+|+++++++ .++.|.+||+. +++.. ..+. .+...+..++|+|+|++|++++ .++.|.+|+..
T Consensus 146 ~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 225 (365)
T 1jof_A 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC
Confidence 577899999999887765 46899999998 56432 2333 2355789999999999987776 47889999765
Q ss_pred CCCEEE---EEe---cC----C-------CcceeE-ECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 243 TGRTVH---QIP---CR----A-------AMNSVE-WNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 243 ~~~~~~---~~~---~~----~-------~i~~~~-~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
+++... .+. .. . .+..++ |+|+|++|++++.+.+- ...+.+++|++
T Consensus 226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~--~~~~~i~v~~~ 289 (365)
T 1jof_A 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF--ELQGYIAGFKL 289 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST--TSCCEEEEEEE
T ss_pred CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC--CCCCeEEEEEE
Confidence 565421 222 11 1 367899 99999988877654320 01135556655
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.75 E-value=2.9e-14 Score=119.31 Aligned_cols=233 Identities=10% Similarity=0.043 Sum_probs=157.8
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC----Ce
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KT 90 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d----~~ 90 (293)
.+.++...+.+++|+++|+.++++..++.|.+||.+.. ..... ...+...+.+++++|++ .++++...+ +.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~---~~~~~-~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---EIKRP-FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEE-EECSSSSEEEEEECTTS-CEEEEECTTSSSCCE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC---cEEEE-eeCCCCCcceEEECCCC-cEEEEeCCCCCCCce
Confidence 45566677899999999998888888999999998642 22211 22456779999999874 677766666 68
Q ss_pred EEEEeCCCCeeeeeee---ecCceEEEEEcCCCCEEEEEeC------CCeEEEEEccccceeeeecccceeeeeEEecCC
Q 022716 91 VRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNR------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~------d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (293)
|.+||..++....... ....+..++++|+|+.+++... .+.+..+|..+.+....
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~---------------- 177 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI---------------- 177 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE----------------
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe----------------
Confidence 9999988776542221 1234667899999987776653 24555555443221110
Q ss_pred CEEEEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeCCC-CEEEE--------EeeccCCCeeEEEEccCCCEEEEec
Q 022716 162 EMFFLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDISE-MLCVR--------TFTKLEWPVRTISFSHTGDYIASAS 231 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~~-~~~~~--------~~~~~~~~v~~l~~sp~~~~l~s~s 231 (293)
......+..++++|+++.+ ++.+.++.|.+||++. +..+. .+.++ ..+..++++++|+++++..
T Consensus 178 -----~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~ 251 (333)
T 2dg1_A 178 -----IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY 251 (333)
T ss_dssp -----EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE
T ss_pred -----ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc
Confidence 0111234578899999855 5556688999999853 22111 11112 3678899999999888888
Q ss_pred CCCcEEEEEcCCCCEEEEEecCC-------CcceeEECCCCCeEEEEEcCC
Q 022716 232 EDLFIDISNVHTGRTVHQIPCRA-------AMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 232 ~d~~i~iw~~~~~~~~~~~~~~~-------~i~~~~~sp~~~~la~~~~d~ 275 (293)
.++.|.+||. +++.+..+.... .+.+++|+|++..|..++.++
T Consensus 252 ~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 252 GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 8899999998 566666665432 478999999987776666554
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=5.1e-15 Score=124.47 Aligned_cols=215 Identities=11% Similarity=0.076 Sum_probs=139.3
Q ss_pred ccEEEEEECCCCCeEEEEeCC---Cc--EEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC--------
Q 022716 21 KKVHSVAWNCTGTKLASGSVD---QT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-------- 87 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~d---g~--v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-------- 87 (293)
..+..++|||||++|+.++.+ +. |.+|+++.. ... .+..+.. +..+.|+|++. .|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g---~~~--~l~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~ 131 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL---SSK--KILEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDF 131 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT---EEE--EEEEESE-EEEEEECTTSS-EEEEEEECCCC----
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC---ceE--EEEcCCC-ccceeECCCCC-EEEEEEccCCCcCCc
Confidence 457889999999999988764 34 566666532 222 2222233 88999999864 4444442
Q ss_pred -------------------CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC-------eEEEEEccccc
Q 022716 88 -------------------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-------ELTILDVRKFK 141 (293)
Q Consensus 88 -------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-------~i~l~d~~~~~ 141 (293)
...|.+||+.+++....+... .+..++|+|+| .++++..+. ...+|.+.+.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~ 209 (347)
T 2gop_A 132 IFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK 209 (347)
T ss_dssp -----CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred EEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc
Confidence 256899999888763333323 66788999999 777775542 33444433222
Q ss_pred eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC--------CcEEEEeCCCCEEEEEeeccCC
Q 022716 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD--------SLVSLWDISEMLCVRTFTKLEW 213 (293)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d--------~~i~iwd~~~~~~~~~~~~~~~ 213 (293)
... +..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++.......+..
T Consensus 210 ~~~---------------------l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~ 263 (347)
T 2gop_A 210 EEK---------------------MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR 263 (347)
T ss_dssp EEE---------------------EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS
T ss_pred eEE---------------------eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc
Confidence 111 1111 122233 7899888776644 3688888 5544433445567
Q ss_pred CeeE-EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 214 PVRT-ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 214 ~v~~-l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.+.. +.|+ ++ ++++++.++.++|| +.+++..........+.+++|+| .++++++.+.
T Consensus 264 ~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 264 GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence 7886 9999 88 88999999999999 87666554455566788999999 5666666553
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=1.1e-15 Score=139.83 Aligned_cols=238 Identities=11% Similarity=-0.013 Sum_probs=148.2
Q ss_pred ceeecCccccEE---------EEEEC--CCCCe-EEEEeC-CCcEEEeecCCCCCCceeEEEeeC-----CcCCeeEEEE
Q 022716 13 SREYTGHKKKVH---------SVAWN--CTGTK-LASGSV-DQTARVWHIEPHGHGKVKDIELRG-----HADSVDQLCW 74 (293)
Q Consensus 13 ~~~~~~h~~~v~---------~l~~s--~~~~~-l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~-----h~~~i~~~~~ 74 (293)
.+.+++|...+. ...|+ |||+. |+.++. +..|.++++...+.+.. ..+.. |...+..++|
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~--~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP--RPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC--EECSCCCCSTTCEEEEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC--EeccCCccCCCCccccCcEE
Confidence 345666766655 56565 99998 776554 45555555430010111 22333 5667889999
Q ss_pred cCCCCCEEEEEeCC----------CeEEEEeCCC------Ceeeeee-eecCceEEEEEcCCCCEEEEEeCC--------
Q 022716 75 DPKHADLIATASGD----------KTVRLWDARS------GKCSQQA-ELSGENINITYKPDGTHIAVGNRD-------- 129 (293)
Q Consensus 75 ~~~~~~~l~s~~~d----------~~i~vwd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d-------- 129 (293)
+|++ +.|++++.+ ..|.+||+.+ +...... ........++|+|||++|+..+.+
T Consensus 138 spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 138 LPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp ETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred CCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence 9985 566677766 5899999987 5544333 333445568999999999988755
Q ss_pred CeEEEEEcc-ccc--eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC--cEEEEeCCCCEE
Q 022716 130 DELTILDVR-KFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLC 204 (293)
Q Consensus 130 ~~i~l~d~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~--~i~iwd~~~~~~ 204 (293)
..|.+||+. +.. .... +...+...+..++|+|+|+++++++.++ .|.+||+..++.
T Consensus 217 ~~i~~~d~~~~g~~~~~~~-------------------l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRT-------------------LLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp EEEEEEEECTTSCEEEEEE-------------------EEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred cEEEEEEECCCCcccccEE-------------------eCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence 378999987 331 1111 1111234567788999999888888888 566667666654
Q ss_pred EEEeeccCCC--------eeEEEEccCCCEEEEecCCCcEEEE--EcCCCCEEEEEec-CCCccee-EECCCCCeEEEEE
Q 022716 205 VRTFTKLEWP--------VRTISFSHTGDYIASASEDLFIDIS--NVHTGRTVHQIPC-RAAMNSV-EWNPKYNLLAYAG 272 (293)
Q Consensus 205 ~~~~~~~~~~--------v~~l~~sp~~~~l~s~s~d~~i~iw--~~~~~~~~~~~~~-~~~i~~~-~~sp~~~~la~~~ 272 (293)
......+... +..++|+|+++++++++. +.++|| |..+++ +..+.. ...+..+ +++++.-++++++
T Consensus 278 ~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~ 355 (662)
T 3azo_A 278 TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAAS 355 (662)
T ss_dssp EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEE
T ss_pred eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcC
Confidence 4332222211 567999999999999999 999999 544444 555543 3345555 4433333344444
Q ss_pred cC
Q 022716 273 DD 274 (293)
Q Consensus 273 ~d 274 (293)
.+
T Consensus 356 ~~ 357 (662)
T 3azo_A 356 PR 357 (662)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=1.8e-14 Score=122.20 Aligned_cols=243 Identities=14% Similarity=0.060 Sum_probs=155.4
Q ss_pred CCCeEEEEe------CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe----------CCCeEEEE
Q 022716 31 TGTKLASGS------VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS----------GDKTVRLW 94 (293)
Q Consensus 31 ~~~~l~s~~------~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~----------~d~~i~vw 94 (293)
+++++.... .|+.|.+||..... .. ..+..+..+ .++++|++ +.++.+. .++.|.+|
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~---~~-~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~ 86 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGK---FL-GMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVW 86 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCC---EE-EEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCe---EE-EEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEE
Confidence 455554432 47899999976432 21 234445444 78999975 4566654 36779999
Q ss_pred eCCCCeeeeeeeec-------CceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeee-ecccce----------eee
Q 022716 95 DARSGKCSQQAELS-------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHR-RKFGYE----------VNE 154 (293)
Q Consensus 95 d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~-~~~~~~----------~~~ 154 (293)
|..+.+....+... ..+..++++|||++|+++.. +++|.+||+++.+.+.. ...+.. ...
T Consensus 87 d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 87 DADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSF 166 (361)
T ss_dssp ETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEE
T ss_pred ECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeE
Confidence 99988877766543 34567999999999998864 58999999998877665 433211 111
Q ss_pred eEEecCCCEEEEecCC-CCEE----------------EEEECCCCCEEEEecCCCcEEEEeCCCCE--EEEEeec-----
Q 022716 155 IAWNMTGEMFFLTTGN-AGCY----------------CIAIDPMGRYFAVGSADSLVSLWDISEML--CVRTFTK----- 210 (293)
Q Consensus 155 v~~~~~~~~~~~~~~~-~~~~----------------~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~~~~----- 210 (293)
+...+++....+.... ..+. .+...|++..++..+.++.+.++|+.... ....+..
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED 246 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred EEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence 2333444433332211 1111 01112445566667788899999986432 2222211
Q ss_pred -c-C---CCeeEEEEccCCCEEEEecC-----------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716 211 -L-E---WPVRTISFSHTGDYIASASE-----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 211 -~-~---~~v~~l~~sp~~~~l~s~s~-----------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
. . .....++|+|+++.++.+.. ...|.+||..+++.+..++... ...++|+|+|++|++++.
T Consensus 247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-
T ss_pred cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-
Confidence 0 0 11223789999887765432 3579999999999999888777 999999999998888774
Q ss_pred CCCCCCCc
Q 022716 275 KNKYQADE 282 (293)
Q Consensus 275 ~~~~~~~~ 282 (293)
+.+.++|.
T Consensus 325 ~~v~v~D~ 332 (361)
T 2oiz_A 325 GNVNVYDI 332 (361)
T ss_dssp SCEEEEEC
T ss_pred CeEEEEEC
Confidence 54554443
No 175
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=4.1e-14 Score=114.68 Aligned_cols=236 Identities=10% Similarity=-0.034 Sum_probs=158.2
Q ss_pred cEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 22 KVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
...+++++++|+.++ +...++.|.+|+..... .. .....+...+..+++.+++ .++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TT-VLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------E-ECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cc-eEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCce
Confidence 788999999999777 54778999999865321 11 1112233456788888864 5666555 8899999987654
Q ss_pred eeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716 101 CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID 179 (293)
Q Consensus 101 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
..... .....+..+++.|+|+.+++...++.|..|+..+....... ......+..++++
T Consensus 99 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~p~~i~~~ 158 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--------------------FTGLNDPDGVAVD 158 (270)
T ss_dssp CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--------------------CCSCCSCCCEEEC
T ss_pred EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--------------------cccCCCceeEEEe
Confidence 32221 11245778999999987777777889999975443211100 0111234568889
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE-ecCCCcce
Q 022716 180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI-PCRAAMNS 258 (293)
Q Consensus 180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~i~~ 258 (293)
++++++++...++.|.+||................+..+++.|+|...++...++.|.+|+.......... .....+.+
T Consensus 159 ~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 159 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLA 238 (270)
T ss_dssp TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEE
T ss_pred CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCcee
Confidence 99998888888889999998876544332233356899999999988888888899999998665433211 11245788
Q ss_pred eEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 259 VEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 259 ~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
++++|+|+++++...+ +.+++|+++
T Consensus 239 i~~~~~g~l~v~~~~~--------~~v~~~~~~ 263 (270)
T 1rwi_B 239 VAVDSDRTVYVADRGN--------DRVVKLTSL 263 (270)
T ss_dssp EEECTTCCEEEEEGGG--------TEEEEECCC
T ss_pred EEECCCCCEEEEECCC--------CEEEEEcCC
Confidence 9999999877776654 456666654
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=7.6e-14 Score=128.70 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=149.6
Q ss_pred CccccEEEEEECCCCCeEEEEeCCC-----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe--
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQ-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-- 90 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~-- 90 (293)
+|...+..++|||||++||.++.++ +|++||++.. ......+.. ..+..++|+|++ +.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg---~~~~~~~~~--~~~~~~~wspDg-~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---KELPDVLER--VKFSCMAWTHDG-KGMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---EEEEEEEEE--ECSCCEEECTTS-SEEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---CCCcccccC--cccceEEEEeCC-CEEEEEEECCccc
Confidence 4555789999999999998776644 8999999753 222222222 225678999975 45666666655
Q ss_pred --------------EEEEeCCCCeee--eeeee---cCceEEEEEcCCCCEEEEEeC-----CCeEEEEEccc------c
Q 022716 91 --------------VRLWDARSGKCS--QQAEL---SGENINITYKPDGTHIAVGNR-----DDELTILDVRK------F 140 (293)
Q Consensus 91 --------------i~vwd~~~~~~~--~~~~~---~~~~~~~~~~~~~~~l~~~~~-----d~~i~l~d~~~------~ 140 (293)
|.+|++.++... ...+. ......+.|+|||++|+..+. +..+.+||+.+ .
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 999999877532 12222 223568899999999988765 56899999875 2
Q ss_pred c-eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC----CcEEEEeCCCCE--EEEEeeccCC
Q 022716 141 K-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD----SLVSLWDISEML--CVRTFTKLEW 213 (293)
Q Consensus 141 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d----~~i~iwd~~~~~--~~~~~~~~~~ 213 (293)
. ..... ..+...... .++|+++.|+..+.+ +.|.+||+.++. ....+..+..
T Consensus 276 ~~~~~~l--------------------~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 276 ILKWVKL--------------------IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp SCCCEEE--------------------ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred ccceEEe--------------------eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 1 11111 111111222 356777766555443 369999987753 1234444433
Q ss_pred --CeeEEEEccCCCEEEEecCCCc--EEEEEcCCCCEEEEEec-CCCcceeEECCCCCeEEEEE
Q 022716 214 --PVRTISFSHTGDYIASASEDLF--IDISNVHTGRTVHQIPC-RAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 214 --~v~~l~~sp~~~~l~s~s~d~~--i~iw~~~~~~~~~~~~~-~~~i~~~~~sp~~~~la~~~ 272 (293)
.+..++|++++.++++...|+. |.+|+..+++.++.+.. ...+..++++|+++.++...
T Consensus 335 ~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQF 398 (710)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEE
Confidence 6888999988888899988885 56677767877666654 34577889999997766543
No 177
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.66 E-value=5.3e-15 Score=137.07 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=149.9
Q ss_pred EEEEECCCCCeEEEEeCC---------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 24 HSVAWNCTGTKLASGSVD---------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 24 ~~l~~s~~~~~l~s~~~d---------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
..++|||||++|+.++.+ +.+.+||+.... . ..+..|...+...+|+|++. .|+.+ .|+.|.+|
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~--~~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~ 137 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---L--ITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVK 137 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE---E--CCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc---E--EEcccCCCcceeeEECCCCC-EEEEE-ECCeEEEE
Confidence 458899999999999887 556699997532 1 23556777899999999865 45555 47899999
Q ss_pred eCCCCeeeeeee-ec------------------CceEEEEEcCCCCEEEEEeCCCe-EEEEEccccce-------eeeec
Q 022716 95 DARSGKCSQQAE-LS------------------GENINITYKPDGTHIAVGNRDDE-LTILDVRKFKP-------IHRRK 147 (293)
Q Consensus 95 d~~~~~~~~~~~-~~------------------~~~~~~~~~~~~~~l~~~~~d~~-i~l~d~~~~~~-------~~~~~ 147 (293)
|+.+++..+... .. +....+.|+|||+.|+..+.|.+ +.+|++..... .....
T Consensus 138 ~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (740)
T 4a5s_A 138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (740)
T ss_dssp SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred ECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence 998876543211 11 11124889999999998876543 77776532111 01111
Q ss_pred c------cceeeeeEEecCC-------CEEEEec------CCCCEEEEEECCCCCEEEEec----CCCcEEEEeCCCCE-
Q 022716 148 F------GYEVNEIAWNMTG-------EMFFLTT------GNAGCYCIAIDPMGRYFAVGS----ADSLVSLWDISEML- 203 (293)
Q Consensus 148 ~------~~~~~~v~~~~~~-------~~~~~~~------~~~~~~~~~~~~~~~~l~~gs----~d~~i~iwd~~~~~- 203 (293)
+ ...+.-..|+..+ ....+.. +...+..++|+|+++.++... .+..|.+||+.+++
T Consensus 218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~ 297 (740)
T 4a5s_A 218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG 297 (740)
T ss_dssp CCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred CCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence 0 1122333455544 2333332 444577899999999666543 23479999988765
Q ss_pred ---EEE--Ee--eccCCCee-----EEEEccCCCEEE-Eec-CCC--cEEEEEcCCCCEEEEEecCCCcceeEECCCCCe
Q 022716 204 ---CVR--TF--TKLEWPVR-----TISFSHTGDYIA-SAS-EDL--FIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL 267 (293)
Q Consensus 204 ---~~~--~~--~~~~~~v~-----~l~~sp~~~~l~-s~s-~d~--~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~ 267 (293)
+.. .+ .++...+. ...|+|||+.++ ..+ .+| .|++|+..++.........-.+..+.+ ++++.
T Consensus 298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~ 376 (740)
T 4a5s_A 298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDY 376 (740)
T ss_dssp EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSE
T ss_pred ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCE
Confidence 221 11 33554444 788999999877 665 344 488889876654432222333444432 44766
Q ss_pred EEEEEcC
Q 022716 268 LAYAGDD 274 (293)
Q Consensus 268 la~~~~d 274 (293)
|+..+..
T Consensus 377 i~f~~~~ 383 (740)
T 4a5s_A 377 LYYISNE 383 (740)
T ss_dssp EEEEESC
T ss_pred EEEEEec
Confidence 6666543
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=7.9e-14 Score=116.72 Aligned_cols=205 Identities=10% Similarity=0.053 Sum_probs=144.5
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEe-------eCCcCCeeEEEEcCCCCCEEEEEe-CCC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-------RGHADSVDQLCWDPKHADLIATAS-GDK 89 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~-------~~h~~~i~~~~~~~~~~~~l~s~~-~d~ 89 (293)
++-.....++++|+|+.+++...++.|++|+.+... .....+.. .++......++++|+++.++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 344578999999999988888889999999975321 01111110 234456789999985567888876 699
Q ss_pred eEEEEeCCCCeeeeeeeec-----------CceEEEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEE
Q 022716 90 TVRLWDARSGKCSQQAELS-----------GENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW 157 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~ 157 (293)
.|++|| .++.....+... ..+..++++|+ +..+++...+++|.+||..+.+.+......
T Consensus 167 ~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-------- 237 (329)
T 3fvz_A 167 RIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-------- 237 (329)
T ss_dssp EEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT--------
T ss_pred eEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc--------
Confidence 999999 455555444321 12678999998 677777778899999998755544433211
Q ss_pred ecCCCEEEEecCCCCEEEEEECC------CCCEEEEecCCCcEEEEeCCCCEEEEEee---ccCCCeeEEEEccCCCEEE
Q 022716 158 NMTGEMFFLTTGNAGCYCIAIDP------MGRYFAVGSADSLVSLWDISEMLCVRTFT---KLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~gs~d~~i~iwd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~l~ 228 (293)
.....+..++++| +++.+++...+..|.+||+.+++.+..+. .+...+..|+++|+|..++
T Consensus 238 ----------~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyv 307 (329)
T 3fvz_A 238 ----------SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYI 307 (329)
T ss_dssp ----------TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEE
T ss_pred ----------ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEE
Confidence 1112233445555 44444555566799999999998887763 4556789999999998889
Q ss_pred EecCCCcEEEEEcC
Q 022716 229 SASEDLFIDISNVH 242 (293)
Q Consensus 229 s~s~d~~i~iw~~~ 242 (293)
+...++.|++|+..
T Consensus 308 ad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 308 GDAHTNTVWKFTLT 321 (329)
T ss_dssp EESSSCCEEEEEEE
T ss_pred EECCCCEEEEEeCC
Confidence 99999999999875
No 179
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.65 E-value=4.5e-13 Score=110.84 Aligned_cols=231 Identities=10% Similarity=0.054 Sum_probs=150.2
Q ss_pred ecCccccEEEEEECCCCCeEEE-------EeCCCcEEEeecCCCCCCceeEEEe---eCCcCCeeEEEEcCCCCCEEEEE
Q 022716 16 YTGHKKKVHSVAWNCTGTKLAS-------GSVDQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIATA 85 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s-------~~~dg~v~iw~~~~~~~~~~~~~~~---~~h~~~i~~~~~~~~~~~~l~s~ 85 (293)
+.+.-....+++|+++|+.+++ +..++.|.+|+.... ....... .++...+..+.+.++++.++++
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~- 88 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG---KKTVICKPEVNGYGGIPAGCQCDRDANQLFVA- 88 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC---CEEEEECCEETTEECCEEEEEECSSSSEEEEE-
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC---cEEEEEecccCCCCCCCceEEEecCCCcEEEE-
Confidence 3444456789999999988887 677899999987543 2222211 1244668889998863345554
Q ss_pred eCCCeEEEEeCCCCeeeee-eee-----cCceEEEEEcCCCCEEEEEeCC---------------CeEEEEEccccceee
Q 022716 86 SGDKTVRLWDARSGKCSQQ-AEL-----SGENINITYKPDGTHIAVGNRD---------------DELTILDVRKFKPIH 144 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~l~~~~~d---------------~~i~l~d~~~~~~~~ 144 (293)
+....|.+||.. ++.... ... ...+..+++.|+|+.+++...+ +.+..+|.. .+...
T Consensus 89 ~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 89 DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 444578899988 654332 211 1235689999999877776554 455555543 21111
Q ss_pred eecccceeeeeEEecCCCEEEEecCCCCEEEEEEC----CCCCEE-EEecCCCcEEEEeCC-CCEE-----EEEeeccC-
Q 022716 145 RRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID----PMGRYF-AVGSADSLVSLWDIS-EMLC-----VRTFTKLE- 212 (293)
Q Consensus 145 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l-~~gs~d~~i~iwd~~-~~~~-----~~~~~~~~- 212 (293)
..........++++ |+++.+ ++...++.|.+||.+ ++.. ...+..+.
T Consensus 167 ---------------------~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 167 ---------------------VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp ---------------------EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred ---------------------eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence 00111223567778 888654 555678899999976 4431 22233332
Q ss_pred CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC-CCcceeEECCCCCeEEEEEc
Q 022716 213 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-AAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 213 ~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-~~i~~~~~sp~~~~la~~~~ 273 (293)
..+..++++++|+++++...++.|.+||..+++.+..+... ..+.+++|+|+++.|..++.
T Consensus 226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 287 (314)
T 1pjx_A 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH 287 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC
Confidence 45788999999998888888899999999877765555443 56889999999996555554
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=3.5e-14 Score=130.61 Aligned_cols=225 Identities=12% Similarity=0.048 Sum_probs=144.5
Q ss_pred CccccEEEEEECCCCCeEE-----EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCe--eEEEEcCCCCCEEEEEeCCCe
Q 022716 18 GHKKKVHSVAWNCTGTKLA-----SGSVDQTARVWHIEPHGHGKVKDIELRGHADSV--DQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~-----s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i--~~~~~~~~~~~~l~s~~~d~~ 90 (293)
+|...+.+++|||||++|| .|+.+.+|++||++...... ..+...+ ..++|+|++ +.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~~~~~~~~~wspDg-~~l~~~~~d~~ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIEGGKYATPKWTPDS-KGFYYEWLPTD 190 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBSCCTTCCCEECTTS-SEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------CcccCcccccceEEecCC-CEEEEEEecCC
Confidence 4556799999999999998 44456789999997542110 1122222 578999985 56667777665
Q ss_pred -------------EEEEeCCCCeee--eeeee---cCceEEEEEcCCCCEEEEEeCCC----eEEEEEccccceeeeecc
Q 022716 91 -------------VRLWDARSGKCS--QQAEL---SGENINITYKPDGTHIAVGNRDD----ELTILDVRKFKPIHRRKF 148 (293)
Q Consensus 91 -------------i~vwd~~~~~~~--~~~~~---~~~~~~~~~~~~~~~l~~~~~d~----~i~l~d~~~~~~~~~~~~ 148 (293)
|++|++.++... ..... ......+.|+|||++++..+.++ .+.++|..+.....
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~---- 266 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL---- 266 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE----
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE----
Confidence 999999877522 22222 13466889999999998887665 56666543322111
Q ss_pred cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec---CCCcEEEEeCCCCEE--EEEeec-c-CCCeeEEEEc
Q 022716 149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS---ADSLVSLWDISEMLC--VRTFTK-L-EWPVRTISFS 221 (293)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs---~d~~i~iwd~~~~~~--~~~~~~-~-~~~v~~l~~s 221 (293)
+..+........+ +++.+++.+. .++.|.+||+.++.. ...+.. + ...+..++|+
T Consensus 267 -----------------l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 267 -----------------LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp -----------------EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred -----------------eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence 1111122223333 4555444443 357899999876532 123333 3 4468888888
Q ss_pred cCCCEEEEecCCCcEEEEEcC-CCCEEEEEec--CCCcceeEECCCCCeEEEEE
Q 022716 222 HTGDYIASASEDLFIDISNVH-TGRTVHQIPC--RAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 222 p~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~ 272 (293)
++.++++...|+..+||... +++.++.+.. ...+..++++|+++.++...
T Consensus 329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence 77888999999998888665 4665655543 34578899999998776444
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.64 E-value=5.5e-13 Score=108.77 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=157.4
Q ss_pred CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc-CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeec
Q 022716 30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS 108 (293)
Q Consensus 30 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 108 (293)
..++.|++++.|+.|.+||.++. . ..-++..+. ..+.++.+.|++ ++++ +.++.|..||. +++.+..+...
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG---~-~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~ 74 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK---E-IVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAP 74 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT---E-EEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECC
T ss_pred CCCcEEEeeCCCCEEEEEECCCC---e-EEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCC
Confidence 45678999999999999998542 2 223344444 457888899875 6776 45788999998 78877776654
Q ss_pred --CceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE
Q 022716 109 --GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF 185 (293)
Q Consensus 109 --~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (293)
..+.++.+.|+|+.+++.+. ++++..+|. +.+.+........+. ........++..++++++
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~--------------~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE--------------RPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS--------------SGGGSCSCCEECTTSCEE
T ss_pred CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC--------------cccccccCceECCCCCEE
Confidence 34567889999999999887 777777775 333333322111000 000112234668899999
Q ss_pred EEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC-------Ccce
Q 022716 186 AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA-------AMNS 258 (293)
Q Consensus 186 ~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~-------~i~~ 258 (293)
++...++.|..||.+ ++.+-++... ..+.++.+.++|+.+++++.++.|..+|..+|+.+.++.... .+..
T Consensus 140 v~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~ 217 (276)
T 3no2_A 140 VPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ 217 (276)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred EEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence 999999999999988 8887777554 456678889999999999999999999999999988875321 1567
Q ss_pred eEECCCCCeEEEEE
Q 022716 259 VEWNPKYNLLAYAG 272 (293)
Q Consensus 259 ~~~sp~~~~la~~~ 272 (293)
+...++|+.+++..
T Consensus 218 ~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 218 LFPLQNGGLYICNW 231 (276)
T ss_dssp EEECTTSCEEEEEE
T ss_pred ceEcCCCCEEEEec
Confidence 78889999988874
No 182
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.64 E-value=2.3e-14 Score=122.23 Aligned_cols=210 Identities=13% Similarity=0.042 Sum_probs=131.4
Q ss_pred EeeCCcCCeeE-----EEEcCCCCCEEEEEeC-CC--eEEEEeCCCCeeeeeeeecCceE-EEEEcCCCCEEEEEeCCCe
Q 022716 61 ELRGHADSVDQ-----LCWDPKHADLIATASG-DK--TVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDE 131 (293)
Q Consensus 61 ~~~~h~~~i~~-----~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~ 131 (293)
.+..|...... .+|+|++. .|+.++. ++ .|.+||+.+++.......+.... ..+|+|||+.|+.++.++.
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSC-EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred EecCCcccccchhhcCccCCCCCC-EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence 34455544443 68999864 5555555 66 48888998887766554443333 5789999999999999999
Q ss_pred EEEEEccccceeeeecccce-e-------------------------------------------eeeEEecC-CCEEEE
Q 022716 132 LTILDVRKFKPIHRRKFGYE-V-------------------------------------------NEIAWNMT-GEMFFL 166 (293)
Q Consensus 132 i~l~d~~~~~~~~~~~~~~~-~-------------------------------------------~~v~~~~~-~~~~~~ 166 (293)
+.+||+.+.+.......+.. + ....|+.. ++...+
T Consensus 104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 183 (388)
T 3pe7_A 104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI 183 (388)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe
Confidence 99999987665433221111 1 11122221 222223
Q ss_pred ecCCCCEEEEEECC-CCCEEEEecCC------CcEEEEeCCCCEEEEEeeccC--CCeeEEEEccCCCEEEEecC--C--
Q 022716 167 TTGNAGCYCIAIDP-MGRYFAVGSAD------SLVSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYIASASE--D-- 233 (293)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~l~~gs~d------~~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~s~s~--d-- 233 (293)
..+...+..++++| +++.|+....+ ..|.++|...... ..+..+. ..+...+|+|||+.|+..+. +
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP 262 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence 33344567889999 99988877653 3788888766543 3444443 25778899999998866543 2
Q ss_pred -CcEEEEEcCCCCEEEEEecCC------CcceeEECCCCCeEEEEE
Q 022716 234 -LFIDISNVHTGRTVHQIPCRA------AMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 234 -~~i~iw~~~~~~~~~~~~~~~------~i~~~~~sp~~~~la~~~ 272 (293)
..|++||+.+++......... ....+.|+|+|+.|++..
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 308 (388)
T 3pe7_A 263 DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDV 308 (388)
T ss_dssp CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence 239999999987533222111 134468999999888764
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.64 E-value=5.4e-12 Score=103.36 Aligned_cols=242 Identities=9% Similarity=0.009 Sum_probs=166.1
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
.+...+.+++++++|+..++...++.|.+||.. . .........+...+..+++.+++ .++++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC
Confidence 455789999999999987777668999999876 2 22222333345678899998764 577776668899999976
Q ss_pred CCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 98 SGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 98 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
++. ..+.. ...+..+++.|+|+.+++...++.+..+|. +..... .. .......+.
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~------------------~~~~~~~~~ 144 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YE------------------LPNKGSYPS 144 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EE------------------CSSTTCCEE
T ss_pred -CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ec------------------CCCCCCCCc
Confidence 332 22221 235678899999988887777889999987 322111 00 001123467
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEE-eeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT-FTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC- 252 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~- 252 (293)
.++++++++.+++...++.|..||. +++.... .......+..+++.++|++.++...++.|.+++. +++... +..
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~ 221 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP 221 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC
Confidence 8899999998888888889999998 5543322 2233456889999999998888777889999999 766433 322
Q ss_pred --CCCcceeEECCCCCeEEEEEcCCCCCCCC-cceEEEEe
Q 022716 253 --RAAMNSVEWNPKYNLLAYAGDDKNKYQAD-EGVFRIYG 289 (293)
Q Consensus 253 --~~~i~~~~~sp~~~~la~~~~d~~~~~~~-~~~~~~~~ 289 (293)
...+..++++|+++++++...++.++.++ .+.++.|.
T Consensus 222 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~ 261 (299)
T 2z2n_A 222 TPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYP 261 (299)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEe
Confidence 24578899999998777664555555544 35555553
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=8.5e-13 Score=107.94 Aligned_cols=198 Identities=9% Similarity=0.069 Sum_probs=138.1
Q ss_pred CccccEEEEEE-CCCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEe-eCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 18 GHKKKVHSVAW-NCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 18 ~h~~~v~~l~~-s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
+|...+.++++ .++++.+++... ++.|++|+.+. ... ..+ ..+...+..+++.|++ .++++...++.|.+|
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g----~~~-~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG----QFV-RKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIF 147 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS----CEE-EEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEE
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC----cEE-EEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEE
Confidence 34567899999 577776666644 89999998432 211 122 2344567899999875 688877788999999
Q ss_pred eCCCCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 95 DARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 95 d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
|.. ++....+.. ...+..++++|+|+.+++...++.|.+||.... .+.... ..+ ...
T Consensus 148 ~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~-----------~~g-------~~~ 207 (286)
T 1q7f_A 148 DQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIG-----------GEG-------ITN 207 (286)
T ss_dssp CTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEES-----------CTT-------TSC
T ss_pred cCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEc-----------cCC-------ccC
Confidence 964 444444332 234678999999998777778899999997432 111110 000 113
Q ss_pred CEEEEEECCCCCEEEEecCCC-cEEEEeCCCCEEEEEeeccC--CCeeEEEEccCCCEEEEecCCCcEEEEEcCC
Q 022716 172 GCYCIAIDPMGRYFAVGSADS-LVSLWDISEMLCVRTFTKLE--WPVRTISFSHTGDYIASASEDLFIDISNVHT 243 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~-~i~iwd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~ 243 (293)
.+..++++|+++++++...++ .|.+||.. +..+..+..+. ..+.+++++|+|+++++ +.|+.|++|+...
T Consensus 208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 208 YPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 467899999999998888886 99999964 55555665443 24779999999987777 5689999998754
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=5.1e-13 Score=111.77 Aligned_cols=219 Identities=11% Similarity=0.053 Sum_probs=149.9
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
.....+++. .++..++...++.|.+||..... ... .+. .......+++++++ .++++...++.|.+||..+++
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~--~~~--~i~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~ 116 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK--EVG--RIT-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYE 116 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC--EEE--EEE-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccE--EEE--EcC-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCe
Confidence 346778774 45555666678999999987532 112 222 23456788887764 555555589999999999988
Q ss_pred eeeeeeecC------ceEEEEEcCCCCEEEEEe--CCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCC
Q 022716 101 CSQQAELSG------ENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAG 172 (293)
Q Consensus 101 ~~~~~~~~~------~~~~~~~~~~~~~l~~~~--~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 172 (293)
....+.... .+..+++ . +..+.++. .+++|.++|+++.+.......+. .
T Consensus 117 ~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~---------------------~ 173 (328)
T 3dsm_A 117 ITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI---------------------Q 173 (328)
T ss_dssp EEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS---------------------C
T ss_pred EEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC---------------------C
Confidence 777666555 5667777 3 44555554 48899999998876554432221 1
Q ss_pred EEEEEECCCCCEEEEecCC----------CcEEEEeCCCCEEEEEeecc-CCCeeEEEEccCCCEEEEecCCCcEEEEEc
Q 022716 173 CYCIAIDPMGRYFAVGSAD----------SLVSLWDISEMLCVRTFTKL-EWPVRTISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d----------~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
...++++|+++++++...+ +.|.++|.++++....+... ...+..++|+|++++|..+.. .|.++|.
T Consensus 174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV 251 (328)
T ss_dssp BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence 2346778888877777655 78999999998877665432 236899999999998877655 8999999
Q ss_pred CCCCEEE--EEec-CCCcceeEECCC-CCeEEEE
Q 022716 242 HTGRTVH--QIPC-RAAMNSVEWNPK-YNLLAYA 271 (293)
Q Consensus 242 ~~~~~~~--~~~~-~~~i~~~~~sp~-~~~la~~ 271 (293)
.+++... .+.. ......++++|+ +.++++.
T Consensus 252 ~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 252 EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 8877532 1121 235678999994 5555554
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=2.7e-13 Score=113.93 Aligned_cols=211 Identities=8% Similarity=-0.016 Sum_probs=132.5
Q ss_pred ccEEEEEECCCCCeEEEEe---------CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---
Q 022716 21 KKVHSVAWNCTGTKLASGS---------VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--- 88 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~---------~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d--- 88 (293)
..+..+++ ||++++... .++.|.+|+++.. ... .+ ..+..+.|+|++. .|+.++.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~---~~~--~l----~~~~~~~~SpDg~-~la~~~~~~~~ 82 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN---ARR--FI----ENATMPRISPDGK-KIAFMRANEEK 82 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC---CEE--EE----ESCEEEEECTTSS-EEEEEEEETTT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC---ceE--Ec----ccCCCeEECCCCC-EEEEEEeccCC
Confidence 46778888 999887642 3677889988743 222 22 4578889999864 55555443
Q ss_pred C--eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC---------------------------CeEEEEEccc
Q 022716 89 K--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---------------------------DELTILDVRK 139 (293)
Q Consensus 89 ~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------------------------~~i~l~d~~~ 139 (293)
+ .|.+||+.+++......... +..++|+|||+.|+..+.+ ..+.+||+.+
T Consensus 83 ~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 83 KVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred CcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 3 47788888887665555444 7789999999999888643 4566677665
Q ss_pred cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC-------cEEEEeCCCCEEEEEeeccC
Q 022716 140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS-------LVSLWDISEMLCVRTFTKLE 212 (293)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~-------~i~iwd~~~~~~~~~~~~~~ 212 (293)
.+..... .. . .+..++++|++ ++++++.++ ...||.+.+++. ..+..+
T Consensus 162 ~~~~~~l--------------------~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~- 216 (347)
T 2gop_A 162 EEVIEEF--------------------EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK- 216 (347)
T ss_dssp TEEEEEE--------------------EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-
T ss_pred CeEEeee--------------------cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-
Confidence 4431111 11 1 33456777888 666665432 334443335543 344444
Q ss_pred CCeeEEEEccCCCEEEEecCC--------CcEEEEEcCCCCEEEEEec-CCCcce-eEECCCCCeEEEEEcCC
Q 022716 213 WPVRTISFSHTGDYIASASED--------LFIDISNVHTGRTVHQIPC-RAAMNS-VEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 213 ~~v~~l~~sp~~~~l~s~s~d--------~~i~iw~~~~~~~~~~~~~-~~~i~~-~~~sp~~~~la~~~~d~ 275 (293)
..+..+ +|+|++|+.++.+ ..|.+|| +++....... ...+.. +.|+ ++ ++++++.++
T Consensus 217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG 283 (347)
T ss_dssp ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence 455544 9999999887754 3578888 5543322222 345775 8999 88 888887764
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=2.8e-13 Score=113.21 Aligned_cols=233 Identities=8% Similarity=-0.014 Sum_probs=158.9
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 101 (293)
.|.+++|++++..++..+.++.++.|.- . ....+..+...+..++|++++ .+++++..++.|.+||..+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITA------E-PWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEEC------E-EEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE
T ss_pred ccceeeecCCccceeEEeecccCccccc------c-eeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcE
Confidence 5678889999888888888999999931 1 122455666677899999864 5777888899999999988775
Q ss_pred eeee-eecCceEEEEEcCCCCEEEEEeCC----CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 102 SQQA-ELSGENINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 102 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~d----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
.... .....+..++++|+|+.+++...+ +.|.+||.++......... ......+..+
T Consensus 79 ~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------~~~~~~~~~i 140 (333)
T 2dg1_A 79 KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------------------LSTAYCIDDM 140 (333)
T ss_dssp EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS------------------SSSCCCEEEE
T ss_pred EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc------------------CccCCcccce
Confidence 5433 234567889999999887777666 6899999876443211100 0012346788
Q ss_pred EECCCCCEEEEecC------CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCC-CCEEE
Q 022716 177 AIDPMGRYFAVGSA------DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHT-GRTVH 248 (293)
Q Consensus 177 ~~~~~~~~l~~gs~------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~-~~~~~ 248 (293)
+++|+++++++... .+.|..+|...++.. .+......+..++|+|+|++| ++.+.++.|.+|+..+ +..+.
T Consensus 141 ~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~ 219 (333)
T 2dg1_A 141 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQ 219 (333)
T ss_dssp EECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEE
T ss_pred EECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcc
Confidence 89999988777654 356777776654332 232333457899999999865 5556788999999864 43322
Q ss_pred EE------ec--CCCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 249 QI------PC--RAAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 249 ~~------~~--~~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.+ .. ...+..++++++|+++++...++.++.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 220 PFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN 260 (333)
T ss_dssp EEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred cccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEEC
Confidence 11 11 12567899999999888776665555443
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.58 E-value=1.9e-11 Score=109.23 Aligned_cols=237 Identities=13% Similarity=0.031 Sum_probs=159.2
Q ss_pred CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC--CCeeeeeeee
Q 022716 30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAEL 107 (293)
Q Consensus 30 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~ 107 (293)
+.+..+++...+++|.++|.+... ... .+.. ...+..+.++|++ ++++.++.|+.|.+||+. +.+....+..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~--v~~--~i~~-g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE--IKT--VLDT-GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC--EEE--EEEC-SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCe--EEE--EEeC-CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 444567788889999999987532 222 2222 2245688999975 577788899999999995 7677776766
Q ss_pred cCceEEEEEc----CCCCEEEEEeC-CCeEEEEEccccceeeeecccc------------eeeeeEEecCCCEEEEecC-
Q 022716 108 SGENINITYK----PDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGY------------EVNEIAWNMTGEMFFLTTG- 169 (293)
Q Consensus 108 ~~~~~~~~~~----~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~- 169 (293)
...+..++++ |||++++++.. ++++.++|..+.+++.....+. .+..+..++.+..+.+...
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 6778899999 69999888775 6899999998888776654321 2333444443333222211
Q ss_pred ----------------------CCCEEEEEECCCCCEEEEec-CCCcEEEEeCCCCEEEEEeec-cCCC--eeEEE-Ecc
Q 022716 170 ----------------------NAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTK-LEWP--VRTIS-FSH 222 (293)
Q Consensus 170 ----------------------~~~~~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~~~~~~~-~~~~--v~~l~-~sp 222 (293)
......+.|+|++++++++. .+++|.++|+++++.+..+.. -..+ -.... ++|
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p 398 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 398 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence 11234568999999876654 678999999999987766543 1111 12222 578
Q ss_pred CC-CEEEEec-CCCcEEEEEcCC-------CCEEEEEecCC-CcceeEECCCCCeEEEEE
Q 022716 223 TG-DYIASAS-EDLFIDISNVHT-------GRTVHQIPCRA-AMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 223 ~~-~~l~s~s-~d~~i~iw~~~~-------~~~~~~~~~~~-~i~~~~~sp~~~~la~~~ 272 (293)
++ ...+++. .++.|.++|..+ .+.+..+.... .-.-+..+|++.++-+..
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~ 458 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 458 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEec
Confidence 74 4455654 568999999988 56777776543 223478899998766654
No 189
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.58 E-value=1.2e-12 Score=121.32 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=140.9
Q ss_pred CccccEEEEEECCCCCeEEEEeCC-----CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC---
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVD-----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK--- 89 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~--- 89 (293)
+|...+..++|||||++||.++.+ .+|++||++... ...... +...+..++|+|+ . .|+.++.+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~---~~~~~~--~~~~~~~~~wspD-~-~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK---PLADEL--KWVKFSGLAWLGN-D-ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC---EEEEEE--EEEESCCCEESTT-S-EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC---CCCccC--CCceeccEEEECC-C-EEEEEEecCccc
Confidence 344578899999999999887654 469999997532 111111 1222356789997 4 445555544
Q ss_pred -----------eEEEEeCCCCeee--eeeeecC---ceEEEEEcCCCCEEEEEeCCC-----eEEEEEccccce--eeee
Q 022716 90 -----------TVRLWDARSGKCS--QQAELSG---ENINITYKPDGTHIAVGNRDD-----ELTILDVRKFKP--IHRR 146 (293)
Q Consensus 90 -----------~i~vwd~~~~~~~--~~~~~~~---~~~~~~~~~~~~~l~~~~~d~-----~i~l~d~~~~~~--~~~~ 146 (293)
.|.+|++.++... ..+.... ....+.|+|||++++..+.++ .+.+||+.+... ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 3889998776521 2222222 356889999999988877543 889999876411 1111
Q ss_pred cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC----CCcEEEEeCCCC--EEEEEeeccCCCeeEEEE
Q 022716 147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA----DSLVSLWDISEM--LCVRTFTKLEWPVRTISF 220 (293)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~----d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~ 220 (293)
.......... ++|+++.|+..+. ++.|.+||+.++ .....+..+...+..+++
T Consensus 313 --------------------~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~ 371 (741)
T 1yr2_A 313 --------------------IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGI 371 (741)
T ss_dssp --------------------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEE
T ss_pred --------------------cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEE
Confidence 1111111222 2367777776665 345999998874 333334444455667777
Q ss_pred ccCCCEEEEecCCCcEEEEEcC-CCCEEEEEec--CCCcceeEECCCCCeEEEE
Q 022716 221 SHTGDYIASASEDLFIDISNVH-TGRTVHQIPC--RAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 221 sp~~~~l~s~s~d~~i~iw~~~-~~~~~~~~~~--~~~i~~~~~sp~~~~la~~ 271 (293)
+ ++.++++...|+..+||... +++.++.+.. ...+..++++|+++.|+..
T Consensus 372 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 372 A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 7 66778888899987777654 4666666543 4567889999998866644
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=4.1e-11 Score=101.90 Aligned_cols=248 Identities=9% Similarity=-0.059 Sum_probs=153.9
Q ss_pred EECCCCCeEEEEeC--CC---cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEE
Q 022716 27 AWNCTGTKLASGSV--DQ---TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVR 92 (293)
Q Consensus 27 ~~s~~~~~l~s~~~--dg---~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~ 92 (293)
...|+++++..... .+ +|.++|..... .. ..++.-..+ .+.++|++..++++.. .++.|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~---~~-~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGS---IL-GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCe---EE-EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence 34578887766653 23 78999987432 11 123222223 7889998654444332 367899
Q ss_pred EEeCCCCeeeeeeeec--------CceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeee-ecccceeee-------
Q 022716 93 LWDARSGKCSQQAELS--------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHR-RKFGYEVNE------- 154 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~-~~~~~~~~~------- 154 (293)
++|..+.+....+... ..+..++++|||++|+++.. ++.|.++| .+.+.... ...+..+..
T Consensus 101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~ 179 (373)
T 2mad_H 101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPST 179 (373)
T ss_pred EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCce
Confidence 9999887766655543 23557899999999998874 57899999 88887766 544322211
Q ss_pred -eEEecCCCEEEEecCCCCEE-----------------EEEECCCCCEEEEecCCCcEEEEeCCCCE--EEEEeec----
Q 022716 155 -IAWNMTGEMFFLTTGNAGCY-----------------CIAIDPMGRYFAVGSADSLVSLWDISEML--CVRTFTK---- 210 (293)
Q Consensus 155 -v~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~~~~---- 210 (293)
+...+++....+.. ..... ...+.+++..++..+.++.+.+.|+.... .+..+.-
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence 12223444333333 22211 11233444444444467889999986542 2222211
Q ss_pred ---c---CCCeeEEEEccCCCEEEEecC----------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eEEEEE-
Q 022716 211 ---L---EWPVRTISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAG- 272 (293)
Q Consensus 211 ---~---~~~v~~l~~sp~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~- 272 (293)
. ......+.++|+++.+..+.. .+.|.+.|..+++.+..++.......++|+|+++ ++.++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 0 122444889999988766543 3579999999999999888777789999999999 666665
Q ss_pred cCCCCCCCCc
Q 022716 273 DDKNKYQADE 282 (293)
Q Consensus 273 ~d~~~~~~~~ 282 (293)
.++.+.+.|.
T Consensus 339 ~~~~V~ViD~ 348 (373)
T 2mad_H 339 GTEVLHIYDA 348 (373)
T ss_pred CCCeEEEEEC
Confidence 3555554443
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=2.8e-12 Score=105.41 Aligned_cols=205 Identities=11% Similarity=0.057 Sum_probs=134.4
Q ss_pred ceeecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE--eeC-CcCCeeEEEEcCCCCCEEEEE----
Q 022716 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LRG-HADSVDQLCWDPKHADLIATA---- 85 (293)
Q Consensus 13 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~-h~~~i~~~~~~~~~~~~l~s~---- 85 (293)
.+.+..+...+.+++++++|+.+++...++.|.+||..... ...+. ..+ ....+..+++.|++ .++++.
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g 136 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE---WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYG 136 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC---EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHH
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc---EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccc
Confidence 34455667789999999999988877778999999985432 21111 111 12346678899864 677763
Q ss_pred e-------------CCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEcc-ccce-eeeecccc
Q 022716 86 S-------------GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKP-IHRRKFGY 150 (293)
Q Consensus 86 ~-------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~-~~~~-~~~~~~~~ 150 (293)
+ ..+.|..++.. ++..........+..++|+|+++.+++.+.++.|.+||+. +... ....
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~---- 211 (296)
T 3e5z_A 137 IDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV---- 211 (296)
T ss_dssp HHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE----
T ss_pred cccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe----
Confidence 2 13455556654 4433332333456789999999999777778999999986 2221 1000
Q ss_pred eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEE-ccCCCEEEE
Q 022716 151 EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF-SHTGDYIAS 229 (293)
Q Consensus 151 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~-sp~~~~l~s 229 (293)
.+ ......+..++++++|+++++. ++.|.+||.+ ++.+..+..+.. +.+++| +|+++.|+.
T Consensus 212 -------------~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v 273 (296)
T 3e5z_A 212 -------------HF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYM 273 (296)
T ss_dssp -------------EE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred -------------Ee-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence 00 1122234468889999977766 7889999986 666667766666 899999 589998888
Q ss_pred ecCCCcEEEEEcCCCC
Q 022716 230 ASEDLFIDISNVHTGR 245 (293)
Q Consensus 230 ~s~d~~i~iw~~~~~~ 245 (293)
++.++ +..++..+.+
T Consensus 274 ~t~~~-l~~~~~~~~~ 288 (296)
T 3e5z_A 274 TVSTE-FWSIETNVRG 288 (296)
T ss_dssp EETTE-EEEEECSCCB
T ss_pred EcCCe-EEEEEccccc
Confidence 88764 4444555443
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.54 E-value=2.2e-12 Score=105.20 Aligned_cols=189 Identities=11% Similarity=0.062 Sum_probs=140.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeeeecC--ceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeE
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIA 156 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~ 156 (293)
.++|++++.|+.|.+||.++++.+..+..+. .+..+.+.|+|+.++ +.++.+..+|. +.+.+.....+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~------- 74 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP------- 74 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC-------
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC-------
Confidence 3689999999999999999999887777654 567889999999888 45788999987 44433322211
Q ss_pred EecCCCEEEEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCCCCEEEEEee------ccCCCeeEEEEccCCCEEEE
Q 022716 157 WNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFT------KLEWPVRTISFSHTGDYIAS 229 (293)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~~~------~~~~~v~~l~~sp~~~~l~s 229 (293)
....+.++.+.|+|+++++.+. ++.|..+|. +++.+.++. .+..+...+++.++|+++++
T Consensus 75 ------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 75 ------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp ------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred ------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 1123456778899999998877 778888886 565555543 12234566788999999999
Q ss_pred ecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE-EEEeee
Q 022716 230 ASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF-RIYGFE 291 (293)
Q Consensus 230 ~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~-~~~~~~ 291 (293)
...++.|..||.. |+.+.++.......++...|+++++++++.++.++.++..+. -+|.+.
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred ecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 9999999999998 999988877667778889999999988877655555544322 345553
No 193
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=4.2e-12 Score=117.08 Aligned_cols=227 Identities=7% Similarity=-0.051 Sum_probs=142.3
Q ss_pred CCCCeEEEEeCCC-c--EEEeecCCCCCCceeEEE----eeCCcCCeeEEEEcCCCCCEEEEEeCCC----eEEEEeCCC
Q 022716 30 CTGTKLASGSVDQ-T--ARVWHIEPHGHGKVKDIE----LRGHADSVDQLCWDPKHADLIATASGDK----TVRLWDARS 98 (293)
Q Consensus 30 ~~~~~l~s~~~dg-~--v~iw~~~~~~~~~~~~~~----~~~h~~~i~~~~~~~~~~~~l~s~~~d~----~i~vwd~~~ 98 (293)
|+|++++....++ . -.+|-.+.........+. -.+|...+..++|+|++..++++.+..| .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8899887554432 2 245654321111111110 0134446788999998654444443333 899999999
Q ss_pred CeeeeeeeecCceEEEEEcCCCCEEEEEeCCCe----------------EEEEEccccceeeeecccceeeeeEEecCCC
Q 022716 99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDE----------------LTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~----------------i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
++..........+..++|+|||+.|+.++.++. |.+|++.+......
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----------------- 223 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI----------------- 223 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-----------------
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce-----------------
Confidence 987653322333457899999999999987765 88888865432111
Q ss_pred EEEEec--CCCCEEEEEECCCCCEEEEecC-----CCcEEEEeCCC------CE-EEEEeeccCCCeeEEEEccCCCEEE
Q 022716 163 MFFLTT--GNAGCYCIAIDPMGRYFAVGSA-----DSLVSLWDISE------ML-CVRTFTKLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 163 ~~~~~~--~~~~~~~~~~~~~~~~l~~gs~-----d~~i~iwd~~~------~~-~~~~~~~~~~~v~~l~~sp~~~~l~ 228 (293)
..... +......++++|++++|+.++. +..|.+||+.+ +. ....+..+...+.. .|+|+|+.|+
T Consensus 224 -~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~ 301 (710)
T 2xdw_A 224 -LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFT 301 (710)
T ss_dssp -EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEE
T ss_pred -EEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEE
Confidence 11111 1223567889999999887764 57899999875 32 34455566555554 4889998877
Q ss_pred EecCC----CcEEEEEcCCCCE--EEE-EecCC--CcceeEECCCCCeEEEEEcCC
Q 022716 229 SASED----LFIDISNVHTGRT--VHQ-IPCRA--AMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 229 s~s~d----~~i~iw~~~~~~~--~~~-~~~~~--~i~~~~~sp~~~~la~~~~d~ 275 (293)
..+.+ ..|.+|++.++.. ... +.... .+..++|++++.+++++..++
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g 357 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred EEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC
Confidence 66543 3599999987642 223 33332 577899998777777777664
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.53 E-value=1.1e-12 Score=111.91 Aligned_cols=203 Identities=13% Similarity=0.021 Sum_probs=127.9
Q ss_pred eeEEEEcCCCCCEEEEEeCC--CeEEEEeCCCCeeeeeeeecCceEE-EEEcCCCCEEEEEeCCCeEEEEEccccceeee
Q 022716 69 VDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHR 145 (293)
Q Consensus 69 i~~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~ 145 (293)
+..++|+|++..++++...+ ..+.+||+.+++............. +.|+|||+.|+..+.++.+.+||+.+.+....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 66778999865444444333 4688889988875544333333232 78999999999999999999999877654332
Q ss_pred ecccc----e----------------------------------------eeeeEEecC-CCEEEEecCCCCEEEEEECC
Q 022716 146 RKFGY----E----------------------------------------VNEIAWNMT-GEMFFLTTGNAGCYCIAIDP 180 (293)
Q Consensus 146 ~~~~~----~----------------------------------------~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~ 180 (293)
..... . .....|+.. ++...+..+...+..+.|+|
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp 197 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRP 197 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECC
Confidence 22110 0 011122221 12222223344567789999
Q ss_pred -CCCEEEEecCC------CcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCC-----CcEEEEEcCCCCE
Q 022716 181 -MGRYFAVGSAD------SLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRT 246 (293)
Q Consensus 181 -~~~~l~~gs~d------~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~~~~ 246 (293)
+++.++..+.+ ..|.+||+..+... .+..+ ...+..++|+|+|++|+.++.+ +.|++||+.+++.
T Consensus 198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 198 FDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 78876665543 46888998765432 33332 2357889999999988777543 4499999988875
Q ss_pred EEEEecCCCcceeEECC-CCCeEEEEEcC
Q 022716 247 VHQIPCRAAMNSVEWNP-KYNLLAYAGDD 274 (293)
Q Consensus 247 ~~~~~~~~~i~~~~~sp-~~~~la~~~~d 274 (293)
....... ... +.|+| +++++++++.+
T Consensus 277 ~~l~~~~-~~~-~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 277 EEVMVMP-PCS-HLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp EEEEECC-SEE-EEEECSSSSEEEEEECC
T ss_pred EEeeeCC-CCC-CCccCCCCceEEEecCC
Confidence 4332222 233 89999 99998887643
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=2.6e-10 Score=93.26 Aligned_cols=243 Identities=10% Similarity=0.013 Sum_probs=163.0
Q ss_pred CccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
.....+.+++++++|+..++...++.|.+|+.. . ......+..+...+..+.+.+++ .++++...++.|..+|..
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G---RIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK 91 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C---ceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC
Confidence 345688999999999988877778999999875 2 22223333444668888888764 577766668899999987
Q ss_pred CCeeeeeeee---cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 98 SGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 98 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
++.. .+.. ...+..+++.++|+.+++...++.+..+|.. .+... ... ......+.
T Consensus 92 -g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~------------------~~~~~~~~ 149 (300)
T 2qc5_A 92 -GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDL------------------PNKGSYPA 149 (300)
T ss_dssp -SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EEC------------------SSTTCCEE
T ss_pred -CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccC------------------CCCCCCce
Confidence 5443 2222 2456788999999887777668889888875 22111 000 11223567
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE-Ee-
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IP- 251 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~- 251 (293)
.++++++++.+++...++.|..+|. ++.... ........+..+++.++|+..++....+.|.+++. +++.... .+
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~ 227 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPT 227 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCC
Confidence 8899999998777777889999998 443332 12223356889999999988887777888999998 5554332 22
Q ss_pred cCCCcceeEECCCCCeEEEEEcCCCCCCCC-cceEEEEe
Q 022716 252 CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD-EGVFRIYG 289 (293)
Q Consensus 252 ~~~~i~~~~~sp~~~~la~~~~d~~~~~~~-~~~~~~~~ 289 (293)
....+..++++|+++++++...++.+...+ .+.++.|.
T Consensus 228 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~ 266 (300)
T 2qc5_A 228 PNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQ 266 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEE
Confidence 234567899999998766664444444433 34444443
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=5.4e-11 Score=97.93 Aligned_cols=227 Identities=11% Similarity=0.037 Sum_probs=148.0
Q ss_pred cccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 20 KKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 20 ~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
..-.-+..|++++. .+++...++.|..||.... ..... .....+.++++.+++ .++++ . +..|.+||..+
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~---~~~~~---~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK---QVQRV---TMDAPVSSVALRQSG-GYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEE---ECSSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTT
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCC---cEEEE---eCCCceEEEEECCCC-CEEEE-E-CCeEEEEECCC
Confidence 34566889999655 5566667899999998643 22211 234568899999875 46554 3 56899999988
Q ss_pred Ceeeeeeeec-----CceEEEEEcCCCCEEEEEeCC---------CeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716 99 GKCSQQAELS-----GENINITYKPDGTHIAVGNRD---------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 99 ~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d---------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
++........ ..+..+++.|+|+.+++.... ..-.+|.+... +...
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--------------------g~~~ 142 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--------------------HHVK 142 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--------------------SCEE
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--------------------CCEE
Confidence 7654333221 224568899999966654322 12233333211 1111
Q ss_pred EEecCCCCEEEEEECCCCCEE-EEecCCCcEEEEeC--CCCEE-----EEEeeccCCCeeEEEEccCCCEEEEecCCCcE
Q 022716 165 FLTTGNAGCYCIAIDPMGRYF-AVGSADSLVSLWDI--SEMLC-----VRTFTKLEWPVRTISFSHTGDYIASASEDLFI 236 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~--~~~~~-----~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i 236 (293)
.+...-.....++++|+++.+ ++.+.++.|..|++ .++.. ...+......+..+++.++|++.++...++.|
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEE
Confidence 111111234568899999865 56667889999987 44432 12222333567899999999988888888899
Q ss_pred EEEEcCCCCEEEEEecC-CCcceeEEC-CCCCeEEEEEcCC
Q 022716 237 DISNVHTGRTVHQIPCR-AAMNSVEWN-PKYNLLAYAGDDK 275 (293)
Q Consensus 237 ~iw~~~~~~~~~~~~~~-~~i~~~~~s-p~~~~la~~~~d~ 275 (293)
.+||..+++.+..+... ..+++++|. |+++.|..++...
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 99999999988877654 468999998 8887766665543
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=6.5e-12 Score=105.02 Aligned_cols=212 Identities=8% Similarity=-0.039 Sum_probs=143.3
Q ss_pred CCCcEEEeecCCCCCCceeEEEee---C--CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEE
Q 022716 40 VDQTARVWHIEPHGHGKVKDIELR---G--HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI 114 (293)
Q Consensus 40 ~dg~v~iw~~~~~~~~~~~~~~~~---~--h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 114 (293)
.++.|.++|.+... .....+. + .-.....+.+. +..++++...++.|.+||..+++.+..+.....+..+
T Consensus 15 ~~~~l~~~d~~t~~---~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCE---VENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTE---EECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEE
T ss_pred CCceEEEEECCCCE---EhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEE
Confidence 38899999987431 1100000 0 11234566664 3456777777899999999999887777656678889
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-CCCc
Q 022716 115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-ADSL 193 (293)
Q Consensus 115 ~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d~~ 193 (293)
+++++++.+++...++.|.++|+++.+.......+... ........+++ .+++.+++.. .++.
T Consensus 90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~---------------~~~~~p~~i~~-~~~~lyv~~~~~~~~ 153 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD---------------MESGSTEQMVQ-YGKYVYVNCWSYQNR 153 (328)
T ss_dssp EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC---------------TTTCBCCCEEE-ETTEEEEEECTTCCE
T ss_pred EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc---------------ccCCCcceEEE-ECCEEEEEcCCCCCE
Confidence 99899854444447899999999887655443322100 00001123444 3444455544 4889
Q ss_pred EEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC----------CcEEEEEcCCCCEEEEEec--CCCcceeEE
Q 022716 194 VSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED----------LFIDISNVHTGRTVHQIPC--RAAMNSVEW 261 (293)
Q Consensus 194 i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d----------~~i~iw~~~~~~~~~~~~~--~~~i~~~~~ 261 (293)
|.++|+++++.+..+.. ......++++|+|++++++..+ +.|.++|..+++....+.. ....+.++|
T Consensus 154 v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 154 ILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred EEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 99999999987777654 3356789999999988887665 7899999999887766654 346889999
Q ss_pred CCCCCeEEEEEc
Q 022716 262 NPKYNLLAYAGD 273 (293)
Q Consensus 262 sp~~~~la~~~~ 273 (293)
+|+++.|.++..
T Consensus 233 ~~d~~~lyv~~~ 244 (328)
T 3dsm_A 233 NGTRDTLYWINN 244 (328)
T ss_dssp CTTSCEEEEESS
T ss_pred ecCCCEEEEEcc
Confidence 999988777643
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=1.9e-10 Score=94.10 Aligned_cols=224 Identities=11% Similarity=0.025 Sum_probs=154.2
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
+...+.+++++++|...++...++.|..|+.+ .......+......+..+.+.++ +.++++...++.|.+||. +
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~ 128 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK----GIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-D 128 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT----SCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-T
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC----CcEEEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-C
Confidence 34679999999999988887778899999865 12222333334456888999876 467777777889999998 5
Q ss_pred Ceeeeee-e-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 99 GKCSQQA-E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 99 ~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
++..... . ....+..+++.++|+.+++...++.+..+|. +.+... .. .......+..+
T Consensus 129 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~------------------~~~~~~~~~~i 188 (299)
T 2z2n_A 129 GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FK------------------IPTPASGPVGI 188 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EE------------------CSSTTCCEEEE
T ss_pred CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-ee------------------CCCCCCcceeE
Confidence 4433221 1 1234678899999987777766789999987 332211 00 01122346688
Q ss_pred EECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec---
Q 022716 177 AIDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--- 252 (293)
Q Consensus 177 ~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--- 252 (293)
+++++++++++...++.|..||. ++.... ........+.++++.++|+..++...++.|..++. +++ +..+..
T Consensus 189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~ 265 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIK 265 (299)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSS
T ss_pred EECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCC
Confidence 99999998888777889999998 554322 12223457899999999997777777889999998 443 334322
Q ss_pred CCCcceeEECCCCCeEEEEE
Q 022716 253 RAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 253 ~~~i~~~~~sp~~~~la~~~ 272 (293)
...+.++.+ ++++++++.+
T Consensus 266 ~~~~~~i~~-~~g~l~v~~~ 284 (299)
T 2z2n_A 266 SAEPHGICF-DGETIWFAME 284 (299)
T ss_dssp SCCEEEEEE-CSSCEEEEET
T ss_pred CCccceEEe-cCCCEEEEec
Confidence 245778889 8888777654
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=9.7e-11 Score=104.70 Aligned_cols=249 Identities=11% Similarity=0.063 Sum_probs=162.4
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEc----CCCCCEEEEEeCCCeEEEEeC
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD----PKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~----~~~~~~l~s~~~d~~i~vwd~ 96 (293)
..++.+.|+|||+++.+++.|+.|.+||+......... .+.... ....+.++ |++..++++.-.++.+.++|.
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~--~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--EIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE--EEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE--EEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence 36789999999999999999999999998511112222 222222 24678898 575545555555799999999
Q ss_pred CCCeeeeeeeecC------------ceEEEEEcCCCCEEEEE-eCCCeEEEEEccccceeee--ecccceeeeeEEecCC
Q 022716 97 RSGKCSQQAELSG------------ENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHR--RKFGYEVNEIAWNMTG 161 (293)
Q Consensus 97 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~--~~~~~~~~~v~~~~~~ 161 (293)
.+.+.+..+...+ .+..+..++++..++.. ..+|++.++|......... ...+.....+.|++++
T Consensus 274 ~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdg 353 (567)
T 1qks_A 274 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 353 (567)
T ss_dssp TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCC
Confidence 8888776654321 34567778876655444 4569999999876533222 2223345567788888
Q ss_pred CEEEEecCCCC-E-------------------------EEEEECCCCC-EEEEec-CCCcEEEEeCCC-------CEEEE
Q 022716 162 EMFFLTTGNAG-C-------------------------YCIAIDPMGR-YFAVGS-ADSLVSLWDISE-------MLCVR 206 (293)
Q Consensus 162 ~~~~~~~~~~~-~-------------------------~~~~~~~~~~-~l~~gs-~d~~i~iwd~~~-------~~~~~ 206 (293)
+.++++..... + ..-.++|++. .++++. .+++|.++|..+ .+.++
T Consensus 354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~ 433 (567)
T 1qks_A 354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD 433 (567)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence 87665442210 0 0011467644 445543 468999999987 66777
Q ss_pred EeeccCCCeeEEEEccCCCEEEEecC-------CCcEEEEEcCCC-----CE-EEEEec---------CCCcceeEECCC
Q 022716 207 TFTKLEWPVRTISFSHTGDYIASASE-------DLFIDISNVHTG-----RT-VHQIPC---------RAAMNSVEWNPK 264 (293)
Q Consensus 207 ~~~~~~~~v~~l~~sp~~~~l~s~s~-------d~~i~iw~~~~~-----~~-~~~~~~---------~~~i~~~~~sp~ 264 (293)
++......-.-+.++|++++|..... ...|.++|..+. .. ...++- ...+..++|+|+
T Consensus 434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (567)
T 1qks_A 434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD 513 (567)
T ss_dssp EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence 77654434455778999999877653 358999999876 22 233321 345788999999
Q ss_pred CCeEEEEE
Q 022716 265 YNLLAYAG 272 (293)
Q Consensus 265 ~~~la~~~ 272 (293)
|..+-++.
T Consensus 514 G~~~~~s~ 521 (567)
T 1qks_A 514 GTEVWFSV 521 (567)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 98766653
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.51 E-value=7.1e-11 Score=101.69 Aligned_cols=239 Identities=11% Similarity=0.083 Sum_probs=152.5
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC--eEEEEeCCC
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARS 98 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~--~i~vwd~~~ 98 (293)
.....++|+++|+.+++...++.|++||.+.. ..... .... .... ++|++++ +.|+.+..++ .|.+++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---~~~~~-~~~~-~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---KVTTV-HPGF-KGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT---EEEEE-EETC-CBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC---EEEEe-eccC-CCCc-eeEecCC-CcEEEEecCCCceEEEEEcCC
Confidence 46889999999997788877899999998642 22222 2222 2233 7888875 4666777655 788888765
Q ss_pred Ceeeeee----e-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 99 GKCSQQA----E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 99 ~~~~~~~----~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
+...... . ....+..++++|++..|+++..+++|..||+.+.........+ ..+ ......
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~---------~~g------~~~~~P 268 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE---------LSG------SLGTNP 268 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC---------CCS------CCCCSS
T ss_pred CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc---------ccC------CCCCCc
Confidence 5432222 1 2344567899996556666777889999998754321110000 000 000011
Q ss_pred E-EEEECCC-CCEEEEecCCCcEEEEeCCCCEEEEEeeccC---------------CCeeEEEEccCCCEEEEec-CCCc
Q 022716 174 Y-CIAIDPM-GRYFAVGSADSLVSLWDISEMLCVRTFTKLE---------------WPVRTISFSHTGDYIASAS-EDLF 235 (293)
Q Consensus 174 ~-~~~~~~~-~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~---------------~~v~~l~~sp~~~~l~s~s-~d~~ 235 (293)
. .++++|+ +.++++-..++.|+.|+.... +..+.+.. .....++++|+|++.++-+ .+..
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~ 346 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC 346 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence 2 6888894 667777777889999987654 23333322 3478999999999888888 8999
Q ss_pred EEEEEcCCCCEEEEEec---------------CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 236 IDISNVHTGRTVHQIPC---------------RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 236 i~iw~~~~~~~~~~~~~---------------~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
|+.|+..++........ -.....|+++|+++++++-..+ ..+|.+.+|
T Consensus 347 I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n--------~~Ir~i~~e 409 (409)
T 3hrp_A 347 LRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG--------KAIRKYAVE 409 (409)
T ss_dssp EEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT--------CEEEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC--------CeEEEEEeC
Confidence 99999877764333322 0235678999987665554432 456666665
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=2.4e-11 Score=104.39 Aligned_cols=247 Identities=9% Similarity=-0.018 Sum_probs=164.5
Q ss_pred CCCCeEEEEeC-C----CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEEEEe
Q 022716 30 CTGTKLASGSV-D----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWD 95 (293)
Q Consensus 30 ~~~~~l~s~~~-d----g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~vwd 95 (293)
++++++..+.. + +.|.+.|..... ....+.. +. .+ .+.++|++..++++-. .++.|.++|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~--vv~~I~v-G~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD 155 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGR--ILGMTDG-GF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD 155 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEE-CS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCE--EEEEEEC-CC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence 46666654444 3 699999987532 2222222 22 33 7889998766665542 467899999
Q ss_pred CCCCeeeeeeeec--------CceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccce--------eeeeEE
Q 022716 96 ARSGKCSQQAELS--------GENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYE--------VNEIAW 157 (293)
Q Consensus 96 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~--------~~~v~~ 157 (293)
..+.+....+... ..+..++++|||++++++.. ++.|.+.|+.+.+.+.....+.. ...+..
T Consensus 156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN 235 (426)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence 9999887776654 23557899999999999874 57999999999887776654321 111445
Q ss_pred ecCCCEEEEecCCCCEE----------------EEEECCCCCEEEEecCCCcEEEEeCCCCEEE--EEeec-------c-
Q 022716 158 NMTGEMFFLTTGNAGCY----------------CIAIDPMGRYFAVGSADSLVSLWDISEMLCV--RTFTK-------L- 211 (293)
Q Consensus 158 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~--~~~~~-------~- 211 (293)
++++....+......+. .+.+.+++..++..+..+.+.+.|....... ..+.. .
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 66676666555332222 1345778877777777889999998654311 11110 0
Q ss_pred --CCCeeEEEEccCCCEEEEecC----------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eEEEEEc-CCCC
Q 022716 212 --EWPVRTISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAGD-DKNK 277 (293)
Q Consensus 212 --~~~v~~l~~sp~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~~-d~~~ 277 (293)
......++++|+++.++.... ++.|.+.|..+.+.+..++.......++|+|+++ ++.++.. ++.+
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~V 395 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTL 395 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeE
Confidence 112233789999887655532 3579999999999999887666788999999998 7777773 5544
Q ss_pred CCCCc
Q 022716 278 YQADE 282 (293)
Q Consensus 278 ~~~~~ 282 (293)
.+.|.
T Consensus 396 sVID~ 400 (426)
T 3c75_H 396 HIYDA 400 (426)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 44443
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=2e-12 Score=109.59 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=122.7
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe-----------eeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 022716 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGK-----------CSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d 136 (293)
+++.+++++. ..++++|+.++ +++|+++..+ ......+.. +..++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 5788888886 46888888874 5569854322 112334556 888999 89999999 889999999
Q ss_pred ccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR 216 (293)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~ 216 (293)
+++........ .....+.++.+.+. .+++++.||.|.+||++++.... +...|+
T Consensus 113 v~sl~~~~~~~--------------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs 166 (388)
T 1xip_A 113 LEELSEFRTVT--------------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVT 166 (388)
T ss_dssp SSSTTCEEEEE--------------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEE
T ss_pred chhhhccCccc--------------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCce
Confidence 98765322110 01112233333322 38889999999999998775432 345899
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCCCCE--EEEE------e----cCCCcceeEECCCCCeEEEEEc
Q 022716 217 TISFSHTGDYIASASEDLFIDISNVHTGRT--VHQI------P----CRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 217 ~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~--~~~~------~----~~~~i~~~~~sp~~~~la~~~~ 273 (293)
+++|||+| ++.|..||.+++|+...+.. .+.+ . +...|.+|.|.+++.++++-+.
T Consensus 167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 99999999 77899999999998877664 4455 1 3456899999999998877554
No 203
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=5.8e-12 Score=115.88 Aligned_cols=225 Identities=11% Similarity=0.027 Sum_probs=139.8
Q ss_pred CCCCCeEEEEeCCC---cEEEeecCCCCCCceeEE-E----eeCCcCCeeEEEEcCCCCCEEEE----EeCCCeEEEEeC
Q 022716 29 NCTGTKLASGSVDQ---TARVWHIEPHGHGKVKDI-E----LRGHADSVDQLCWDPKHADLIAT----ASGDKTVRLWDA 96 (293)
Q Consensus 29 s~~~~~l~s~~~dg---~v~iw~~~~~~~~~~~~~-~----~~~h~~~i~~~~~~~~~~~~l~s----~~~d~~i~vwd~ 96 (293)
+|+|++++....++ .-.+|...... +....+ . -.+|...+..++|+|++..++++ |+.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGES-GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTT-SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCC-CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 37899988776654 45666553211 111111 1 12455568899999986544433 334568999999
Q ss_pred CCCeeeeeeeecC-ceEEEEEcCCCCEEEEEeCCCe-------------EEEEEccccceeeeecccceeeeeEEecCCC
Q 022716 97 RSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDE-------------LTILDVRKFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 97 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~-------------i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
.+++......... ....++|+|||+.|+.++.|.. |.+|++.+......
T Consensus 155 ~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~----------------- 217 (695)
T 2bkl_A 155 DSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT----------------- 217 (695)
T ss_dssp TTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE-----------------
T ss_pred CCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce-----------------
Confidence 9987641111121 1257899999999999988765 88998876442111
Q ss_pred EEEEec--CCCCEEEEEECCCCCEEEEecCCC----cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec---CC
Q 022716 163 MFFLTT--GNAGCYCIAIDPMGRYFAVGSADS----LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS---ED 233 (293)
Q Consensus 163 ~~~~~~--~~~~~~~~~~~~~~~~l~~gs~d~----~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s---~d 233 (293)
..... +......+.++|+|++|+.++.++ .|.+++...+. ...+..+...+....+ |+|.+++... .+
T Consensus 218 -lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~ 294 (695)
T 2bkl_A 218 -VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPR 294 (695)
T ss_dssp -EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTT
T ss_pred -EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCC
Confidence 01111 123456788999999988887666 67777765543 3344555555666656 6666444443 25
Q ss_pred CcEEEEEcCCCCE---EEEEec--CCCcceeEECCCCCeEEEEEcCC
Q 022716 234 LFIDISNVHTGRT---VHQIPC--RAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 234 ~~i~iw~~~~~~~---~~~~~~--~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
+.|.+|++.++.. ...+.. ...+..++|+ ++.+++++..|+
T Consensus 295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg 340 (695)
T 2bkl_A 295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA 340 (695)
T ss_dssp CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT
T ss_pred CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC
Confidence 7899999987753 333333 3357788888 566777777664
No 204
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.46 E-value=4.9e-11 Score=100.30 Aligned_cols=267 Identities=10% Similarity=0.017 Sum_probs=160.2
Q ss_pred ccEEEEEECCCCCeEEEEe--CCCcEEEeecCCCCCCceeEE-----EeeCCcCCeeEEEEcCCCCCEEEEEeC-----C
Q 022716 21 KKVHSVAWNCTGTKLASGS--VDQTARVWHIEPHGHGKVKDI-----ELRGHADSVDQLCWDPKHADLIATASG-----D 88 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~--~dg~v~iw~~~~~~~~~~~~~-----~~~~h~~~i~~~~~~~~~~~~l~s~~~-----d 88 (293)
..+..++++++|+.+++.. .++.++||.++ . +..... ...+|...+..+++.+++ .++++-.. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~--g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-Q--DGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-T--TEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-C--CCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCC
Confidence 6899999999999988864 23446777765 1 121100 012345678899998874 45554433 5
Q ss_pred CeEEEEeCCCCeeeeeeeec-------CceEEEEEcCCCCEE-EEEe---CCCeEEEEEccccceeeeecc--cceeeee
Q 022716 89 KTVRLWDARSGKCSQQAELS-------GENINITYKPDGTHI-AVGN---RDDELTILDVRKFKPIHRRKF--GYEVNEI 155 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l-~~~~---~d~~i~l~d~~~~~~~~~~~~--~~~~~~v 155 (293)
..|.+||+.+++....+... .....++++|++..+ ++.. .++.|.+||+.+.+..+.... .......
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 78999999988866655543 134678999865444 5544 578999999986654433211 0000001
Q ss_pred EEecCCCEEEEecC-------CCCEEEEEECCCCCEEEEecCCC-cEEEEeCC---CCEE-----EE--EeeccCCCeeE
Q 022716 156 AWNMTGEMFFLTTG-------NAGCYCIAIDPMGRYFAVGSADS-LVSLWDIS---EMLC-----VR--TFTKLEWPVRT 217 (293)
Q Consensus 156 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~gs~d~-~i~iwd~~---~~~~-----~~--~~~~~~~~v~~ 217 (293)
.+.+.+..+..... ...+..++++|+++.|..+..++ .+..++.. .+.. .. ...++......
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 11122221111111 12356799999999888776665 45555431 1100 00 01123335677
Q ss_pred EEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec--CCCcceeEECCCCCeEEEEEcCCCCCC------CCcceEEEEe
Q 022716 218 ISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC--RAAMNSVEWNPKYNLLAYAGDDKNKYQ------ADEGVFRIYG 289 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~--~~~i~~~~~sp~~~~la~~~~d~~~~~------~~~~~~~~~~ 289 (293)
++++++|.+.++...++.|.+||.++++....... -.....++|.|++.++++++....+.. ..+..++||.
T Consensus 253 ia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~~~~~~~~~~~~i~~ 332 (343)
T 2qe8_A 253 ISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGENISAPPYYIFR 332 (343)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGBTTCCCCCSCEEEEE
T ss_pred EEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccccCCCcCcCCeEEEE
Confidence 99999999999999999999999866654322221 234678999999988888775432211 1223467776
Q ss_pred ee
Q 022716 290 FE 291 (293)
Q Consensus 290 ~~ 291 (293)
+.
T Consensus 333 ~~ 334 (343)
T 2qe8_A 333 LK 334 (343)
T ss_dssp EC
T ss_pred EE
Confidence 53
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=8.7e-11 Score=99.28 Aligned_cols=249 Identities=13% Similarity=0.058 Sum_probs=162.7
Q ss_pred EECCCCCeEEEEeC-----CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEE
Q 022716 27 AWNCTGTKLASGSV-----DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVR 92 (293)
Q Consensus 27 ~~s~~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~ 92 (293)
...|+++++..... ++.|.+.|..... ....+.. +. .+ . +.++|++..++++.. .++.|.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--v~~~I~v-G~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDG-GF-LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEE-CS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe--EEEEEEC-CC-CC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 44689998877655 6889999987532 2222221 32 23 3 899998766555542 367899
Q ss_pred EEeCCCCeeeeeeeecC--------ceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccce-------e-ee
Q 022716 93 LWDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYE-------V-NE 154 (293)
Q Consensus 93 vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~-------~-~~ 154 (293)
+||..+.+....+.... .+..++++|||+++++... ++.+.++|+.+.+.+.....+.. . ..
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~ 192 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF 192 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCcee
Confidence 99999998877776542 4567999999999988864 68999999999887777654221 0 11
Q ss_pred eEEecCCCEEEEecCC-CCEEE----------------EEE-CCCCCEEEEecCCCcEEEEeCCCCE--EEEEee---c-
Q 022716 155 IAWNMTGEMFFLTTGN-AGCYC----------------IAI-DPMGRYFAVGSADSLVSLWDISEML--CVRTFT---K- 210 (293)
Q Consensus 155 v~~~~~~~~~~~~~~~-~~~~~----------------~~~-~~~~~~l~~gs~d~~i~iwd~~~~~--~~~~~~---~- 210 (293)
+..++++.+..+.... ..+.. ..| .++|+++. .+.+|+|.+.|..... .+..+. .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc
Confidence 2445666666655443 22211 122 24565444 5557899999986542 222221 0
Q ss_pred ------cCCCeeEEEEccCCCEEEEecC----------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCC-eEEEEEc
Q 022716 211 ------LEWPVRTISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYN-LLAYAGD 273 (293)
Q Consensus 211 ------~~~~v~~l~~sp~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~-~la~~~~ 273 (293)
.......++++|+++.++.... ...|.+.|..+++.++.+....++..|+++|+++ +|.++..
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 0123445788999988766532 2579999999999999988777899999999996 5555443
Q ss_pred -CCCCCCCCc
Q 022716 274 -DKNKYQADE 282 (293)
Q Consensus 274 -d~~~~~~~~ 282 (293)
++.+.+.|.
T Consensus 352 ~~~~VsViD~ 361 (386)
T 3sjl_D 352 GDKTLYIHDA 361 (386)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEEEC
Confidence 444444333
No 206
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.45 E-value=2.2e-11 Score=98.47 Aligned_cols=200 Identities=9% Similarity=-0.010 Sum_probs=138.3
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
...+.+++++++|+.+++.. ++.|.+|+.+... .... .......+..+++.+++ .++++...++.|.+|+..+.
T Consensus 66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~---~~~~-~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~ 139 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN---QTVL-PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSK 139 (270)
T ss_dssp CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC---CEEC-CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCC
T ss_pred cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce---Eeee-ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCc
Confidence 35678999999998666655 8899999876421 1111 11223567889998864 57777777889999976554
Q ss_pred eeeeeee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 100 KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 100 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
....... ....+..+++.|+|+.+++...++.|..||.......... ......+..+++
T Consensus 140 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--------------------~~~~~~p~~i~~ 199 (270)
T 1rwi_B 140 TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP--------------------FTDITAPWGIAV 199 (270)
T ss_dssp SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC--------------------CSSCCSEEEEEE
T ss_pred eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec--------------------ccCCCCceEEEE
Confidence 3322111 1234567999999987777767889999997654322110 011134668899
Q ss_pred CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716 179 DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 179 ~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~ 245 (293)
++++.++++...++.|.+||................+.+++++|+|+.+++...++.|.+++....+
T Consensus 200 d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 200 DEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 9999888888888999999987654332222223568999999999988999999999999886543
No 207
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=5.3e-10 Score=92.32 Aligned_cols=230 Identities=13% Similarity=0.115 Sum_probs=147.8
Q ss_pred cceeecCccccEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCe
Q 022716 12 HSREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (293)
Q Consensus 12 ~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~ 90 (293)
..+.+..+........|+|+|+ .++++..++.|..|+... ... .+..+...+..+.+.+++ .++++...++.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~~~--~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~ 108 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----TVD--VLLDATAFTNGNAVDAQQ-RLVHCEHGRRA 108 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----CEE--EEEESCSCEEEEEECTTS-CEEEEETTTTE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----CEE--EEeCCCCccceeeECCCC-CEEEEECCCCE
Confidence 3444555556778999999998 556777789999998642 222 233455668899999874 56665555688
Q ss_pred EEEEeCCCCeeeeeee-ec----CceEEEEEcCCCCEEEE----EeC-------------CCeEEEEEccccceeeeecc
Q 022716 91 VRLWDARSGKCSQQAE-LS----GENINITYKPDGTHIAV----GNR-------------DDELTILDVRKFKPIHRRKF 148 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~-~~----~~~~~~~~~~~~~~l~~----~~~-------------d~~i~l~d~~~~~~~~~~~~ 148 (293)
|.+|+.. ++...... .. ..+..+++.|+|+.+++ |.. .+.|..+|..+.+...
T Consensus 109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~---- 183 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR---- 183 (305)
T ss_dssp EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE----
T ss_pred EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE----
Confidence 9999986 54322211 11 12346889999987776 321 2345555543322111
Q ss_pred cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC------CcEEEEeCCCCEE--EEEeec-cCCCeeEEE
Q 022716 149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEMLC--VRTFTK-LEWPVRTIS 219 (293)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d------~~i~iwd~~~~~~--~~~~~~-~~~~v~~l~ 219 (293)
+. .......++++|+++.|.++... +.|..|++..... ...+.. ....+..++
T Consensus 184 -----------------~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 184 -----------------MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp -----------------EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred -----------------Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence 11 11234568899999877666554 7899999865431 111211 233456789
Q ss_pred EccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716 220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 220 ~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
+.++|++.++. .++ |.+|+. +++.+..+.....+.+++|+|+++.|..++.+
T Consensus 246 ~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 246 VDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp ECTTSCEEECC-SSE-EEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred ECCCCCEEEec-CCc-EEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC
Confidence 99999955544 444 899998 57777777665578999999999888877754
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.44 E-value=2.7e-10 Score=96.30 Aligned_cols=234 Identities=14% Similarity=0.089 Sum_probs=146.0
Q ss_pred EEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEeeC--C---cCCeeEEEEcCCCCCEEEEEeC-CC
Q 022716 26 VAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRG--H---ADSVDQLCWDPKHADLIATASG-DK 89 (293)
Q Consensus 26 l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~--h---~~~i~~~~~~~~~~~~l~s~~~-d~ 89 (293)
++++|||++|..+. .++.|.+||..... ....+.+.. + -..-..+.++|++..++++... ++
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 99999999987665 36889999987542 223333321 0 1124467889986544444333 68
Q ss_pred eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccc-cceeeee--ccc---cee-eeeEEe-cCC
Q 022716 90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRR--KFG---YEV-NEIAWN-MTG 161 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~-~~~~~~~--~~~---~~~-~~v~~~-~~~ 161 (293)
.|.++|+.+++....+...+. ...+....+.+++.+.||++.+.++.. .+..... .+. ..+ ....|. +.+
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG 238 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG 238 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred eEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence 999999999988877765442 122222334555666677776666654 2221111 010 001 112332 223
Q ss_pred CEEEEec--------C-CC-----------------------CEEEEEECCCCCEEEEecC----------CCcEEEEeC
Q 022716 162 EMFFLTT--------G-NA-----------------------GCYCIAIDPMGRYFAVGSA----------DSLVSLWDI 199 (293)
Q Consensus 162 ~~~~~~~--------~-~~-----------------------~~~~~~~~~~~~~l~~gs~----------d~~i~iwd~ 199 (293)
..++... . .. ....++++|+++.+.+... .+.|.++|+
T Consensus 239 ~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 239 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 2222111 1 00 1123666778777665532 257999999
Q ss_pred CCCEEEEEeeccCCCeeEEEEccCCC-EEEE-ecCCCcEEEEEcCCCCEEEEEecCCCcceeEECCC
Q 022716 200 SEMLCVRTFTKLEWPVRTISFSHTGD-YIAS-ASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 264 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s-~s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~ 264 (293)
++++.++.+.- ..++..|+|+||++ +|++ ...++.|.++|..+++.++.++....-+.+.+++|
T Consensus 319 ~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 319 KTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 99988887643 23788999999997 6655 45689999999999999999988777788888876
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=2.6e-09 Score=87.28 Aligned_cols=224 Identities=10% Similarity=-0.027 Sum_probs=150.9
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
...+.+++++++|+..++...++.|..||.. . .............+..+++.++ +.++++...++.|..+|.. +
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g---~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g 134 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G---GFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTAD-G 134 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECTT-S
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-C---CeEEecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECCC-C
Confidence 4678999999999887777768889999865 2 2222333334456888888875 4677776668899999987 5
Q ss_pred eeeee-ee-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716 100 KCSQQ-AE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177 (293)
Q Consensus 100 ~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
+.... .. ....+..+++.++|+..++...++.+..+|. +..... .. .......+..++
T Consensus 135 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~------------------~~~~~~~~~~i~ 194 (300)
T 2qc5_A 135 TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YP------------------LPTNAAAPVGIT 194 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE------------------CSSTTCCEEEEE
T ss_pred CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-ee------------------CCCCCCCcceEE
Confidence 44322 11 1245678899999986666666788988887 322111 00 001123467889
Q ss_pred ECCCCCEEEEecCCCcEEEEeCCCCEEEE-EeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE-Ee-cCC
Q 022716 178 IDPMGRYFAVGSADSLVSLWDISEMLCVR-TFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ-IP-CRA 254 (293)
Q Consensus 178 ~~~~~~~l~~gs~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~-~~-~~~ 254 (293)
++++++++++....+.|..||. ++.... ........+.++++.++|+..++...++.|..++. +++.... ++ ...
T Consensus 195 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 272 (300)
T 2qc5_A 195 SGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENA 272 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTC
T ss_pred ECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCC
Confidence 9999988888777888999998 443322 22233456889999999997777777889999998 4543321 22 124
Q ss_pred CcceeEECCCCCeEEEE
Q 022716 255 AMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 255 ~i~~~~~sp~~~~la~~ 271 (293)
.+.++.+.|+|+++++.
T Consensus 273 ~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 273 EPHGITFGKDGSVWFAL 289 (300)
T ss_dssp CCCCEEECTTSCEEEEC
T ss_pred ccceeEeCCCCCEEEEc
Confidence 57788888888765544
No 210
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=1e-11 Score=105.29 Aligned_cols=174 Identities=11% Similarity=0.095 Sum_probs=122.8
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCC------CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~------~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
++..|++++....+++|+.|+ +++|++.... ...........+.. |+.++| + +..|+.+ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d-~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H-GDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E-TTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C-CCEEEEE-cCCcEEEEE
Confidence 689999999999999999875 5569864211 00011101223555 999999 3 4677777 889999999
Q ss_pred CCCCeeeeee-eecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 96 ARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 96 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
+.+-...... .+...+..+.+.+. .+++++.||.+.+||+++...... ...+.
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~------------------------~~~Vs 166 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL------------------------AQNVT 166 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE------------------------EESEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc------------------------cCCce
Confidence 8765433322 23344445555543 488899999999999986543210 12467
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEe------e---ccCCCeeEEEEccCCCEEEE
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTF------T---KLEWPVRTISFSHTGDYIAS 229 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~------~---~~~~~v~~l~~sp~~~~l~s 229 (293)
|++|+|+| ++.|..||++++|+...+.. ..++ . +|...|.+|.|.++++++++
T Consensus 167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 89999999 67899999999999887764 4445 2 36788999999999999876
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=2.1e-09 Score=89.63 Aligned_cols=221 Identities=10% Similarity=0.008 Sum_probs=141.7
Q ss_pred cEEEEEECCCCC-eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 22 KVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 22 ~v~~l~~s~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
-..+..|+|++. .+++...++.|..|+.+.. ...... ....+.++.+.+++ .++++ .. ..|.+||..+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---~~~~~~---~~~~v~~i~~~~dg-~l~v~-~~-~gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG---RKTVHA---LPFMGSALAKISDS-KQLIA-SD-DGLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT---EEEEEE---CSSCEEEEEEEETT-EEEEE-ET-TEEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC---cEEEEE---CCCcceEEEEeCCC-eEEEE-EC-CCEEEEECCCCc
Confidence 457889999855 4566667899999998642 222222 24568899998874 45554 44 448999998876
Q ss_pred eeeeeeec-----CceEEEEEcCCCCEEEEEeCC------CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 101 CSQQAELS-----GENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 101 ~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
........ ..+..++++|+|+.+++...+ +.+..+| +.+. ... ...
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~--------------------~~~ 177 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL--------------------FAD 177 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE--------------------EEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe--------------------eCC
Confidence 54332221 235578899999876654422 3444444 2211 110 001
Q ss_pred CCCEEEEEECCCCCEE-EEecCCCcEEEEeCC--CC-E-----EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 170 NAGCYCIAIDPMGRYF-AVGSADSLVSLWDIS--EM-L-----CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l-~~gs~d~~i~iwd~~--~~-~-----~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
......++++|+++.+ ++.+.++.|.+||+. ++ . ....+......+..+++.++|.+.++...++.|.+|+
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 1123468899999865 445567899999985 44 2 2222322345578899999999887776778899999
Q ss_pred cCCCCEEEEEecCC-CcceeEEC-CCCCeEEEEEcCC
Q 022716 241 VHTGRTVHQIPCRA-AMNSVEWN-PKYNLLAYAGDDK 275 (293)
Q Consensus 241 ~~~~~~~~~~~~~~-~i~~~~~s-p~~~~la~~~~d~ 275 (293)
. +++.+..+.... .+.+++|+ |++..|..++..+
T Consensus 258 ~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 258 T-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp T-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred C-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 8 677766665433 58899998 8988776665544
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=7.9e-11 Score=108.28 Aligned_cols=226 Identities=11% Similarity=0.116 Sum_probs=135.2
Q ss_pred CccccEEEEEECCCCCeEEEE-----eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC---
Q 022716 18 GHKKKVHSVAWNCTGTKLASG-----SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK--- 89 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~-----~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~--- 89 (293)
+|...+..++|||||++||-+ +.+.+|++||++... .....+.+. ....++|+ ++ +.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~---~~~~~~~~~--k~~~~~Ws-Dg-~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ---PLETPLKDV--KFSGISWL-GN-EGFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS---EEEEEEEEE--ESCCCEEE-TT-TEEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC---CCccccCCc--eeccEEEe-CC-CEEEEEEecCccc
Confidence 456689999999999999843 333679999998542 222222211 12456788 65 4455555553
Q ss_pred ----------eEEEEeCCCCeee--eeeeecC----ceEEEEEcCCCCEEEEEeC----CCeEEEEEccccc-eeeeecc
Q 022716 90 ----------TVRLWDARSGKCS--QQAELSG----ENINITYKPDGTHIAVGNR----DDELTILDVRKFK-PIHRRKF 148 (293)
Q Consensus 90 ----------~i~vwd~~~~~~~--~~~~~~~----~~~~~~~~~~~~~l~~~~~----d~~i~l~d~~~~~-~~~~~~~ 148 (293)
.|++|++.++... ..++... ....+.++|||++++.... ++.+.++|+.+.. ......
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~- 277 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ- 277 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-
Confidence 4999998776431 2222222 2567899999998866543 3588999986642 111111
Q ss_pred cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE-EEEecC---CCcEEEEeCCCCEE--EEEeeccCCCeeEEEEcc
Q 022716 149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGSA---DSLVSLWDISEMLC--VRTFTKLEWPVRTISFSH 222 (293)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~gs~---d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~sp 222 (293)
......... +++++.. ++.... .+.|..+|+.++.. .+.+..+...+. .|+|
T Consensus 278 -------------------~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~ 335 (693)
T 3iuj_A 278 -------------------GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS 335 (693)
T ss_dssp -------------------CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred -------------------CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence 111111122 2334433 333333 35788899877543 234555655554 8999
Q ss_pred CCCEEEEecC-CC--cEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEEcC
Q 022716 223 TGDYIASASE-DL--FIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 223 ~~~~l~s~s~-d~--~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~~d 274 (293)
++++|+.... ++ .|++|+... ...+.+. ....+..+.++|++..++....+
T Consensus 336 ~g~~lv~~~~~~g~~~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 336 GSGYLFAEYMVDATARVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp ETTEEEEEEEETTEEEEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred ECCEEEEEEEECCeeEEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence 9998877664 44 588898864 4455543 33456678888998877666543
No 213
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=7.2e-10 Score=91.43 Aligned_cols=203 Identities=10% Similarity=0.074 Sum_probs=130.5
Q ss_pred ccccEEEEEECCC-CCeEEEEeCCCcEEEeecCCCCCCceeEE-E-e-eC-CcCCeeEEEEcCCCCCEEEEEeCC-----
Q 022716 19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDI-E-L-RG-HADSVDQLCWDPKHADLIATASGD----- 88 (293)
Q Consensus 19 h~~~v~~l~~s~~-~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~-~-~~-h~~~i~~~~~~~~~~~~l~s~~~d----- 88 (293)
+...+.+++++++ |+.+++ +.++.|.+||.+ .. .... . . .+ ....+..+.+.+++ .++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~-~~~~~l~~~d~~-g~---~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~ 142 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVA-DMRLGLLVVQTD-GT---FEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPA 142 (314)
T ss_dssp EECCEEEEEECSSSSEEEEE-ETTTEEEEEETT-SC---EEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTS
T ss_pred CCCCCceEEEecCCCcEEEE-ECCCCEEEEeCC-CC---EEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccc
Confidence 5567999999999 654444 444578888876 21 1111 0 0 01 12357889998864 677666554
Q ss_pred ----------CeEEEEeCCCCeeeeeeeecCceEEEEEc----CCCCEEEEE-eCCCeEEEEEccc-cceeeeeccccee
Q 022716 89 ----------KTVRLWDARSGKCSQQAELSGENINITYK----PDGTHIAVG-NRDDELTILDVRK-FKPIHRRKFGYEV 152 (293)
Q Consensus 89 ----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~-~~d~~i~l~d~~~-~~~~~~~~~~~~~ 152 (293)
+.|..+|.. ++..........+..++++ |+++.++++ ..++.|.+||++. ........
T Consensus 143 ~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~----- 216 (314)
T 1pjx_A 143 DYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV----- 216 (314)
T ss_dssp CCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE-----
T ss_pred cccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE-----
Confidence 567777765 5443333333456678999 999766555 4678999999762 22110000
Q ss_pred eeeEEecCCCEEEEecCC-CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEe
Q 022716 153 NEIAWNMTGEMFFLTTGN-AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASA 230 (293)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~ 230 (293)
+. .+..+. ..+..++++++|+++++...++.|.+||.++++.+..+..+...+.+++|+|+|++| ++.
T Consensus 217 ----~~------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 217 ----WG------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp ----EE------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred ----EE------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe
Confidence 00 000111 335678899999998888788999999988665555555555779999999999955 555
Q ss_pred cCCCcEEEEEcCC
Q 022716 231 SEDLFIDISNVHT 243 (293)
Q Consensus 231 s~d~~i~iw~~~~ 243 (293)
..++.|..+++..
T Consensus 287 ~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 287 HENNAVWKFEWQR 299 (314)
T ss_dssp TTTTEEEEEECSS
T ss_pred CCCCeEEEEeCCC
Confidence 6678888888764
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.35 E-value=4.6e-10 Score=103.97 Aligned_cols=226 Identities=12% Similarity=0.051 Sum_probs=134.0
Q ss_pred CCCCCeEEEEeCCCc---EEEeecCCCC--CCceeEE-E----eeCCcCCeeEEEEcCCCCCEEEEEeCCC----eEEEE
Q 022716 29 NCTGTKLASGSVDQT---ARVWHIEPHG--HGKVKDI-E----LRGHADSVDQLCWDPKHADLIATASGDK----TVRLW 94 (293)
Q Consensus 29 s~~~~~l~s~~~dg~---v~iw~~~~~~--~~~~~~~-~----~~~h~~~i~~~~~~~~~~~~l~s~~~d~----~i~vw 94 (293)
+|+|++++....++. -.+|..+... .+....+ . -.+|...+..+.|+|++..++++.+.+| .|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389999887665543 6677654220 1111111 0 1233346788999998654444443333 59999
Q ss_pred eCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCe--------------EEEEEccccceeeeecccceeeeeEEecC
Q 022716 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDE--------------LTILDVRKFKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--------------i~l~d~~~~~~~~~~~~~~~~~~v~~~~~ 160 (293)
|+.+++.............++|+|| +.|+.++.+.. |.+|++.+.....
T Consensus 195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~---------------- 257 (741)
T 1yr2_A 195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD---------------- 257 (741)
T ss_dssp ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC----------------
T ss_pred ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC----------------
Confidence 9999876543211122246889999 99998886654 6677765432110
Q ss_pred CCEEEEecCC--CCEEEEEECCCCCEEEEecCCC-----cEEEEeCCCCE-E-EEEeeccCCCeeEEEEccCCCEEEEec
Q 022716 161 GEMFFLTTGN--AGCYCIAIDPMGRYFAVGSADS-----LVSLWDISEML-C-VRTFTKLEWPVRTISFSHTGDYIASAS 231 (293)
Q Consensus 161 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~gs~d~-----~i~iwd~~~~~-~-~~~~~~~~~~v~~l~~sp~~~~l~s~s 231 (293)
........ .....+.++|+|++|+..+.++ .|.+||+.++. . ...+..+...+... ++|+|+.|+..+
T Consensus 258 --~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s 334 (741)
T 1yr2_A 258 --QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVS 334 (741)
T ss_dssp --EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEE
T ss_pred --EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEE
Confidence 11111111 2356788999999888777543 89999987762 1 34455555455544 358999887776
Q ss_pred CC----CcEEEEEcCCCC-EEEE-EecC-CCcceeEECCCCCeEEEEEcCC
Q 022716 232 ED----LFIDISNVHTGR-TVHQ-IPCR-AAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 232 ~d----~~i~iw~~~~~~-~~~~-~~~~-~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.+ +.|.+|++.++. .... ++.. ..+..++|+ ++.++++...|+
T Consensus 335 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg 384 (741)
T 1yr2_A 335 GDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDA 384 (741)
T ss_dssp CTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT
T ss_pred CCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECC
Confidence 53 459999988752 3333 3333 235567777 455666666654
No 215
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.34 E-value=1.1e-08 Score=86.99 Aligned_cols=217 Identities=13% Similarity=0.020 Sum_probs=134.5
Q ss_pred EEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEee--CC---cCCeeEEEEcCCCCCEEEEEeC--
Q 022716 25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELR--GH---ADSVDQLCWDPKHADLIATASG-- 87 (293)
Q Consensus 25 ~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~--~h---~~~i~~~~~~~~~~~~l~s~~~-- 87 (293)
.++++|||++|..+. .++.|.+||..... ....+.+. .+ ...-..+.++|++. .|+.+..
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~--~~~~i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~ 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAA 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc--EEEEEECCCccccccCCCccceEECCCCC-EEEEEecCC
Confidence 899999999998775 36889999986432 22222222 00 11234778999865 5555543
Q ss_pred CCeEEEEeCCCCeeeee-eeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeec-----cc-cee-eeeEEe
Q 022716 88 DKTVRLWDARSGKCSQQ-AELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK-----FG-YEV-NEIAWN 158 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~-----~~-~~~-~~v~~~ 158 (293)
+..|.++| .+++.... +...+ ++.+.|++ +.+++.+.|+++.++|. +.+...... .+ ..+ ....+.
T Consensus 147 ~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 147 GPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA 221 (373)
T ss_pred CCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence 57899999 98877665 44333 24444554 34555667888888888 544432110 00 000 000011
Q ss_pred cCCC----------EEEEec-----------------------CCCCEEEEEECCCCCEEEEecC----------CCcEE
Q 022716 159 MTGE----------MFFLTT-----------------------GNAGCYCIAIDPMGRYFAVGSA----------DSLVS 195 (293)
Q Consensus 159 ~~~~----------~~~~~~-----------------------~~~~~~~~~~~~~~~~l~~gs~----------d~~i~ 195 (293)
+.+. ...+.. .......++++|+++.+.++.. .+.|.
T Consensus 222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~ 301 (373)
T 2mad_H 222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT 301 (373)
T ss_pred ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence 1111 110000 0112234678898887666543 35799
Q ss_pred EEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec-CCCcEEEEEcCCCCEEEEE
Q 022716 196 LWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~d~~i~iw~~~~~~~~~~~ 250 (293)
++|..+++.+.++. .......++|+|||+ .++++. .++.|.++|..+++.+..+
T Consensus 302 VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 302 SVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 99999999888874 334689999999999 777777 5899999999999988763
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.26 E-value=6.7e-09 Score=89.20 Aligned_cols=233 Identities=12% Similarity=0.052 Sum_probs=136.9
Q ss_pred EEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcCCCCCEEEEEeC--
Q 022716 25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASG-- 87 (293)
Q Consensus 25 ~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~~~~~~l~s~~~-- 87 (293)
.++++|||++|..+. .++.|.++|..... ....+.+.+- -..-..+.++|++. .++.+..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~ 198 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSP 198 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccccccCCCcceEEEcCCCC-EEEEEecCC
Confidence 899999999987775 46789999987542 2233333200 11234567889864 5555543
Q ss_pred CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeee----ecccc-e-eeeeEEecC
Q 022716 88 DKTVRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR----RKFGY-E-VNEIAWNMT 160 (293)
Q Consensus 88 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~----~~~~~-~-~~~v~~~~~ 160 (293)
++.|.+.|+.+.+....+...+. ....|++ ..+++.+.||++.+.++...+.... ...+. . ...+.+.+.
T Consensus 199 ~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d 275 (426)
T 3c75_H 199 APAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR 275 (426)
T ss_dssp SCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT
T ss_pred CCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC
Confidence 67899999999988777665432 1222322 3344444555555555532221100 00000 0 001112222
Q ss_pred CCEEEEecCCC---------------------------------CEEEEEECCCCCEEEEecC----------CCcEEEE
Q 022716 161 GEMFFLTTGNA---------------------------------GCYCIAIDPMGRYFAVGSA----------DSLVSLW 197 (293)
Q Consensus 161 ~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~l~~gs~----------d~~i~iw 197 (293)
+..+++..... ....++++|+++.+.+... ++.|.++
T Consensus 276 g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVI 355 (426)
T 3c75_H 276 SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVL 355 (426)
T ss_dssp TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEE
Confidence 22221111110 0112577888776555432 3579999
Q ss_pred eCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec-CCCcEEEEEcCCCCEEEEEecCCCcceeEECCC
Q 022716 198 DISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPK 264 (293)
Q Consensus 198 d~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~ 264 (293)
|..+.+.+.++..- .....+.|+|||+ ++++.. .++.|.++|..+++.++.+..-+.-..+..+||
T Consensus 356 D~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~~ 423 (426)
T 3c75_H 356 NAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQIITTHD 423 (426)
T ss_dssp ETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCCEEECCC
T ss_pred ECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCcEEEcCC
Confidence 99999888877532 3588999999999 887777 699999999999999988732222233555553
No 217
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.25 E-value=6.1e-09 Score=88.93 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=141.2
Q ss_pred CCCCeEE-EEeCCCcEEEeecCCCCC-CceeEEE----ee---CCcCCeeEEEEcCCCCCEEEEEeCC------CeEEEE
Q 022716 30 CTGTKLA-SGSVDQTARVWHIEPHGH-GKVKDIE----LR---GHADSVDQLCWDPKHADLIATASGD------KTVRLW 94 (293)
Q Consensus 30 ~~~~~l~-s~~~dg~v~iw~~~~~~~-~~~~~~~----~~---~h~~~i~~~~~~~~~~~~l~s~~~d------~~i~vw 94 (293)
++.++|+ +|..++.|.++|+.+... ....... +. +- ..-..+...|++ +++++..+ +.+.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~-s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGY-SRLHTVHCGPDA--IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCE-EEEEEEEECSSC--EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCC-CcccceeECCCe--EEEEcCCCcCCCCCCeEEEE
Confidence 7788775 566789999999864321 1211111 00 11 122344566764 77787776 789999
Q ss_pred eCCCCeeeeeeeecCc----eEEEEEcCCCCEEEEEe-------------------CCCeEEEEEccccceeeeecccce
Q 022716 95 DARSGKCSQQAELSGE----NINITYKPDGTHIAVGN-------------------RDDELTILDVRKFKPIHRRKFGYE 151 (293)
Q Consensus 95 d~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~-------------------~d~~i~l~d~~~~~~~~~~~~~~~ 151 (293)
|.++.+.+..++.... ...+.|+|+++.+++.. .+.+|.+||+.+.+..+....+..
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 9999888877764422 33477899999888874 368999999987665554433210
Q ss_pred eeeeEEecCCCEEEEecCCCCEEEE--EECCCCCEEEEec------CCCcEEEEeCCCCEE--EEEe--ecc--------
Q 022716 152 VNEIAWNMTGEMFFLTTGNAGCYCI--AIDPMGRYFAVGS------ADSLVSLWDISEMLC--VRTF--TKL-------- 211 (293)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~gs------~d~~i~iwd~~~~~~--~~~~--~~~-------- 211 (293)
.....-+ +++|+++++.+++ .+++|.+|....+.. .+.+ ...
T Consensus 250 ------------------g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 250 ------------------NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp ------------------EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred ------------------CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence 0011123 3478887765555 456777765544321 1111 110
Q ss_pred --------CCCeeEEEEccCCCEEEEec-CCCcEEEEEcCC---CCEEEEEecCCC---------------cceeEECCC
Q 022716 212 --------EWPVRTISFSHTGDYIASAS-EDLFIDISNVHT---GRTVHQIPCRAA---------------MNSVEWNPK 264 (293)
Q Consensus 212 --------~~~v~~l~~sp~~~~l~s~s-~d~~i~iw~~~~---~~~~~~~~~~~~---------------i~~~~~sp~ 264 (293)
......|.+||||++|..+. ..+.|.++|+.. .+.+..+...+. -+.++++|+
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 13467899999999986665 578899999863 345556655422 478999999
Q ss_pred CCeEEEEE
Q 022716 265 YNLLAYAG 272 (293)
Q Consensus 265 ~~~la~~~ 272 (293)
|++|.++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999888
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.25 E-value=3.8e-09 Score=86.81 Aligned_cols=191 Identities=12% Similarity=0.051 Sum_probs=120.5
Q ss_pred ccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE-eeC--CcCCeeEEEEcCCCCCEEEEEeCC-------
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRG--HADSVDQLCWDPKHADLIATASGD------- 88 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~~--h~~~i~~~~~~~~~~~~l~s~~~d------- 88 (293)
+...+.+++++++|+++++ . ++.|.+||.+.. ....+. ... ....++.+.+.|++ .++++...+
T Consensus 52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g---~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~ 125 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ---SAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVL 125 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT---EEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBC
T ss_pred CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC---cEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccc
Confidence 3467999999999995554 3 577888987642 222111 111 12347889999875 466654221
Q ss_pred --CeEEEEeCCC-CeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEcc--ccceeeeecccceeeeeEEecCCC
Q 022716 89 --KTVRLWDARS-GKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVR--KFKPIHRRKFGYEVNEIAWNMTGE 162 (293)
Q Consensus 89 --~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~--~~~~~~~~~~~~~~~~v~~~~~~~ 162 (293)
....+|.+.. ++..........+..++|+|+++.++. .+.++.|..||+. +........ ...
T Consensus 126 ~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~--------~~~---- 193 (297)
T 3g4e_A 126 ERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRS--------VYK---- 193 (297)
T ss_dssp CTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEE--------EEE----
T ss_pred cCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEE--------EEE----
Confidence 2334554432 333222333345668999999987754 4557899999873 322111000 000
Q ss_pred EEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc-cCCCEEEEe
Q 022716 163 MFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-HTGDYIASA 230 (293)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~s~ 230 (293)
+......+..++++++|++.++....+.|..||.++++.+..+..+...+++++|. |+++.|...
T Consensus 194 ---~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 194 ---LEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp ---CCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred ---CCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 00112345578899999988888888899999999888888877666789999998 888766443
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=3.8e-09 Score=87.13 Aligned_cols=196 Identities=11% Similarity=0.071 Sum_probs=122.9
Q ss_pred eecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE--eeCC-cCCeeEEEEcCCCCCEEEE----EeC
Q 022716 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LRGH-ADSVDQLCWDPKHADLIAT----ASG 87 (293)
Q Consensus 15 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~h-~~~i~~~~~~~~~~~~l~s----~~~ 87 (293)
.+..+...+..++++++|+.+++...++.|.+|+.+ . ....+. ..+. ...++.+.+.+++ .+++| |..
T Consensus 80 ~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g---~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~ 154 (305)
T 3dr2_A 80 VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G---QAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLR 154 (305)
T ss_dssp EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGS
T ss_pred EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C---CEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCcc
Confidence 344455678999999999977666666889999875 1 221111 1111 1346778888864 57765 321
Q ss_pred -------------CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCC------CeEEEEEccccceeeeecc
Q 022716 88 -------------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKF 148 (293)
Q Consensus 88 -------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~l~d~~~~~~~~~~~~ 148 (293)
.+.|..+|..+++..... ....+..++|+||++.|+++... +.|..||+.... +...
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-- 230 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-- 230 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE--
T ss_pred ccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC--
Confidence 246777787666544333 33455679999999988777665 689899876533 1110
Q ss_pred cceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEE
Q 022716 149 GYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIA 228 (293)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 228 (293)
..+..........++++++|++.++ +.+ .|.+|+. +++.+..+.... .+..++|+|+++.|.
T Consensus 231 --------------~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~ 292 (305)
T 3dr2_A 231 --------------RHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLF 292 (305)
T ss_dssp --------------EEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEE
T ss_pred --------------eEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEE
Confidence 0011111122335778899995544 444 4999998 455566665444 688999999998887
Q ss_pred EecCCCcEE
Q 022716 229 SASEDLFID 237 (293)
Q Consensus 229 s~s~d~~i~ 237 (293)
.++.++..+
T Consensus 293 it~~~~l~~ 301 (305)
T 3dr2_A 293 ITGGPCLWM 301 (305)
T ss_dssp EEETTEEEE
T ss_pred EEcCCeEEE
Confidence 777765433
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.19 E-value=1.5e-08 Score=87.15 Aligned_cols=205 Identities=12% Similarity=0.005 Sum_probs=127.3
Q ss_pred EEECCCCCeEEEEeCCC--cEEEeecCCCCCCceeEE-EeeC-CcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCee
Q 022716 26 VAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDI-ELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (293)
Q Consensus 26 l~~s~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~-~~~~-h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 101 (293)
++|+++++.|+.+..++ .|.+++..... ..... .+.. ....+..++++|+++.+++ +..++.|..||..++..
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~--~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~ 252 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGW--APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV 252 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTT--CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCc--eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE
Confidence 89999999998888876 67777765322 11111 1112 3455678899986555554 67788999999987653
Q ss_pred eee----eeec-C-ceE-EEEEcCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 102 SQQ----AELS-G-ENI-NITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 102 ~~~----~~~~-~-~~~-~~~~~~~-~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
... .... . .+. .++++|+ +..+++....++|..||....... ...... ... + ..-......-...
T Consensus 253 ~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~-~~g~~~-~~g--~---~dg~~~~~~~~~P 325 (409)
T 3hrp_A 253 TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEW-FCGSAT-QKT--V---QDGLREEALFAQP 325 (409)
T ss_dssp EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEE-EEECTT-CCS--C---BCEEGGGCBCSSE
T ss_pred EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEE-EEeCCC-CCC--c---CCCcccccEeCCC
Confidence 322 1111 1 124 8999995 555555556788999887543110 000000 000 0 0000000001235
Q ss_pred EEEEECCCCCEEEEec-CCCcEEEEeCCCCEEEEEeecc---------------CCCeeEEEEccCCCEEEEecCCCcEE
Q 022716 174 YCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTKL---------------EWPVRTISFSHTGDYIASASEDLFID 237 (293)
Q Consensus 174 ~~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~~~~~~~~---------------~~~v~~l~~sp~~~~l~s~s~d~~i~ 237 (293)
..++++|+++++++-+ .++.|+.|++.++.. .++.++ -.....++++|+|.++++...++.|+
T Consensus 326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir 404 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIR 404 (409)
T ss_dssp EEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEE
T ss_pred eEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEE
Confidence 7899999999888888 899999999877763 444443 13578999999988888888888887
Q ss_pred EEEc
Q 022716 238 ISNV 241 (293)
Q Consensus 238 iw~~ 241 (293)
.+++
T Consensus 405 ~i~~ 408 (409)
T 3hrp_A 405 KYAV 408 (409)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7654
No 221
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.18 E-value=3.4e-08 Score=78.43 Aligned_cols=180 Identities=16% Similarity=0.205 Sum_probs=128.8
Q ss_pred CeeEEEEcCCCCCEEEEEeCCC--eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceee
Q 022716 68 SVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH 144 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~ 144 (293)
....+.|+ + ..++.|.+.+| .|+++|+++++.................+++..|.... .++.+.++|.++.+.+.
T Consensus 44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 35677776 3 46777888766 89999999999888877766554433344455655555 58899999999988777
Q ss_pred eecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEEE
Q 022716 145 RRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTIS 219 (293)
Q Consensus 145 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~ 219 (293)
+...+.+-. .+.+++..|..++.++.|.++|.++++.+..+.-.. ..++.+.
T Consensus 122 ti~~~~eG~-----------------------glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 122 SFNYDGEGW-----------------------GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEECSSCCC-----------------------CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEECCCCce-----------------------EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 655432111 122456666666667889999999988777664321 2356688
Q ss_pred EccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC-------------CCcceeEECCCCCeEEEEEc
Q 022716 220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR-------------AAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 220 ~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~-------------~~i~~~~~sp~~~~la~~~~ 273 (293)
+. +|+..|..-.+..|.+.|.++++.+..+... .-.+.|+|+|+.+.|..+|.
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 76 7876666667889999999999998887642 13478999999988888875
No 222
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.18 E-value=3.1e-08 Score=79.45 Aligned_cols=182 Identities=12% Similarity=0.127 Sum_probs=126.2
Q ss_pred CeeEEEEcCCCCCEEEEEeC--CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe-CCCeEEEEEccccceee
Q 022716 68 SVDQLCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH 144 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~~~~ 144 (293)
....+.++++ +.++++.+. ++.|++.|+.+++...............+.++++.|.... .++.+.++|..+.+.+.
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE
Confidence 3568889886 455555543 6899999999999887776555433333333455665555 57899999999877766
Q ss_pred eecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEEE
Q 022716 145 RRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTIS 219 (293)
Q Consensus 145 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~ 219 (293)
....+ . +.+ ..+.++++.+.++..++.|.++|.++.+.+..+.--. ..++.+.
T Consensus 101 ~i~~g-~-------~~g--------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 101 NFTHQ-M-------KDG--------------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EEECC-S-------SSC--------------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEECC-C-------CCe--------------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence 54432 0 000 1233566656566678899999999988777665321 2367888
Q ss_pred EccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------------CCcceeEECCCCCeEEEEEc
Q 022716 220 FSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 220 ~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------------~~i~~~~~sp~~~~la~~~~ 273 (293)
|. +|+..+....++.|.+-|.++++.+..+... .-.+.|+|+|+++.|..++.
T Consensus 159 ~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 159 YI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred EE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 88 7766666667889999999999998887643 13478999999987766664
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.17 E-value=4.7e-09 Score=88.62 Aligned_cols=238 Identities=8% Similarity=-0.124 Sum_probs=142.4
Q ss_pred EEEEeCCC----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEe---------CCCeEEEEeCCCCee
Q 022716 35 LASGSVDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWDARSGKC 101 (293)
Q Consensus 35 l~s~~~dg----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~---------~d~~i~vwd~~~~~~ 101 (293)
.++...++ +|.+.|.+... ....+. .+.. + .+.++|++..++++.. .++.|.+||..+++.
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~--v~~~i~-vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGV--TLGHSL-GAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTE--EEEEEE-ECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred EEECCccCCccceEEEEECCCCe--EEEEEe-CCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 34444455 77788887532 222222 2333 4 6899998766655542 378899999999998
Q ss_pred eeeeeec--------CceEEEEEcCCCCEEEEEeC--CCeEEE--EEccccceeeeeccccee--------eeeEEecCC
Q 022716 102 SQQAELS--------GENINITYKPDGTHIAVGNR--DDELTI--LDVRKFKPIHRRKFGYEV--------NEIAWNMTG 161 (293)
Q Consensus 102 ~~~~~~~--------~~~~~~~~~~~~~~l~~~~~--d~~i~l--~d~~~~~~~~~~~~~~~~--------~~v~~~~~~ 161 (293)
...+... ..+..++++|||++++++.. ++.+.+ +|+.+ ......+... .-+...+++
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTT
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCC
Confidence 8887665 24567999999999998874 467888 89876 2222211100 001122222
Q ss_pred CEEEEecCC--------------------CCEEEEEECCCCCEEEEecCCCcEEEEeCCCC--EEEEEeec-------cC
Q 022716 162 EMFFLTTGN--------------------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRTFTK-------LE 212 (293)
Q Consensus 162 ~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~--~~~~~~~~-------~~ 212 (293)
....+.... .+. + .+++..++..+. +.+.+.|.... ..+..+.- +.
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN 260 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence 222222211 111 2 445555555555 88999998643 22222210 11
Q ss_pred ---CCeeEEEEccCCCEEEEecC---------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCe-EEEEE-cCCCCC
Q 022716 213 ---WPVRTISFSHTGDYIASASE---------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNL-LAYAG-DDKNKY 278 (293)
Q Consensus 213 ---~~v~~l~~sp~~~~l~s~s~---------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~-la~~~-~d~~~~ 278 (293)
.....++|+|+++.++.+.. +..+.++|..+++.+..++.......++|+|++++ +++.. .++.+.
T Consensus 261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~Vs 340 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEE
Confidence 11222789999988765432 23456999999999888876667889999999985 45554 365555
Q ss_pred CCCcceEE
Q 022716 279 QADEGVFR 286 (293)
Q Consensus 279 ~~~~~~~~ 286 (293)
..|..+.|
T Consensus 341 VID~~t~k 348 (368)
T 1mda_H 341 IYDAASDQ 348 (368)
T ss_dssp EEESSSCE
T ss_pred EEECCCCc
Confidence 55544433
No 224
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.16 E-value=2.1e-08 Score=79.59 Aligned_cols=180 Identities=11% Similarity=0.054 Sum_probs=127.9
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEE-EeCCCeEEEEEccccceeee
Q 022716 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIHR 145 (293)
Q Consensus 67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~l~d~~~~~~~~~ 145 (293)
.....+.|.. ..++++.+.++.|+++|+++++..... ...........++++.|.. .-.++.+.++|.++.+.+.+
T Consensus 55 ~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3356777763 568888899999999999999887777 6665444223334444444 44688999999999887776
Q ss_pred ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEEEE
Q 022716 146 RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTISF 220 (293)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~ 220 (293)
...+.+-. .+ .++++.|..+..++.|.++|.++++.+.++.-.. ..++.+.|
T Consensus 132 i~~~~eGw---------------------GL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 132 TRYSGEGW---------------------GL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp EECSSCCC---------------------CE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EeCCCcee---------------------EE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 55432111 12 2456777767778899999999988777665322 24577887
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------------CCcceeEECCCCCeEEEEEc
Q 022716 221 SHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 221 sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------------~~i~~~~~sp~~~~la~~~~ 273 (293)
. +|+..|..-.+..|.+-|.++++.+..+... .-.|.|+|+|+++.|..+|.
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6 7876666667889999999999998877542 13478999998887777764
No 225
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.11 E-value=1.1e-07 Score=74.78 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=127.1
Q ss_pred CCeeEEEEcCCCCCEEEEEeCC--CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCeEEEEEcccccee
Q 022716 67 DSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPI 143 (293)
Q Consensus 67 ~~i~~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~ 143 (293)
.....+.|++ ..++.|.+.+ +.|+++|+.+++.................+.+..|... -.++.+.++|.++.+.+
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 3466888875 4577777775 48999999999988887776665443333344555444 46889999999998877
Q ss_pred eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-----CCeeEE
Q 022716 144 HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-----WPVRTI 218 (293)
Q Consensus 144 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l 218 (293)
.+...+.+- ..++ +++..|..+..++.|.++|.++.+.+.++.-.. ..++.+
T Consensus 99 ~ti~~~~~G---------------------wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 99 ARFRYPGEG---------------------WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp EEEECSSCC---------------------CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEeCCCCc---------------------eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 765543211 1222 455555556668899999999988777665322 245677
Q ss_pred EEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC--------------CCcceeEECCCCCeEEEEEc
Q 022716 219 SFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCR--------------AAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 219 ~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--------------~~i~~~~~sp~~~~la~~~~ 273 (293)
.+. +|+..|..-.+..|.+.|.++++.+..+... .-.|.|+|+|+++.|..+|.
T Consensus 156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 765 7776666667789999999999998877532 12477999999888888874
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.11 E-value=4.3e-08 Score=81.63 Aligned_cols=187 Identities=12% Similarity=0.039 Sum_probs=115.8
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE-ee-CC-cCCeeEEEEcCCCCCEEEEEeC------CCe
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LR-GH-ADSVDQLCWDPKHADLIATASG------DKT 90 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~-~h-~~~i~~~~~~~~~~~~l~s~~~------d~~ 90 (293)
...+.+++|+++|+++++. .+ .|.+||.... ....+. .. +. ...++.+.+.|++ .++++... .+.
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~ 162 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGS 162 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCC---cEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceE
Confidence 4579999999999877754 34 4888887543 222111 11 11 2357889999875 46655432 244
Q ss_pred EEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCeEEEEEcc--cc-ceeeeecccceeeeeEEecCCCEEEE
Q 022716 91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVR--KF-KPIHRRKFGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 91 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~--~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (293)
|..++ +++.............++|+|+++.++.+ +.++.|.+||+. +. ....... + .. +
T Consensus 163 l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~-------~-~~-------~ 225 (326)
T 2ghs_A 163 IYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV-------F-ID-------S 225 (326)
T ss_dssp EEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE-------E-EE-------C
T ss_pred EEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE-------E-EE-------C
Confidence 55555 45443322223345678999999877555 456899999975 32 2110000 0 00 0
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEc-cCCCEEEEe
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFS-HTGDYIASA 230 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~s~ 230 (293)
......+..++++++|++.++...++.|..||. +++.+..+......+.+++|+ |+++.|+.+
T Consensus 226 ~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 226 TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 001223456888999998887767789999998 566666666666679999998 888766443
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.10 E-value=2.4e-11 Score=103.22 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=100.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe
Q 022716 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN 158 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~ 158 (293)
...+++++.|+.|..||..+++.+..... +.+.+..+.++++.+++++.|+.+..||.++.+.+........ ..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~--~~--- 82 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP--EL--- 82 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH--HH---
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc--cc---
Confidence 35788999999999999999998776665 4444444556777888888999999999977654433221100 00
Q ss_pred cCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEE
Q 022716 159 MTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI 238 (293)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~i 238 (293)
....++ + ..+..+++|+.|+.|..||.++++.+-.+..+. ...++|++..+++++.|+.|+.
T Consensus 83 ---------~~~sp~----~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a 144 (369)
T 2hz6_A 83 ---------VQASPC----R-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITM 144 (369)
T ss_dssp ---------HTTCSC----C------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEEC
T ss_pred ---------cccCce----E-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEE
Confidence 000000 0 134567778889999999999998776654433 2456788899999999999999
Q ss_pred EEcCCCCEEEEEecCCCcceeEECCCC---CeEEEEEcCCCCCCCCc--ceEEEEeee
Q 022716 239 SNVHTGRTVHQIPCRAAMNSVEWNPKY---NLLAYAGDDKNKYQADE--GVFRIYGFE 291 (293)
Q Consensus 239 w~~~~~~~~~~~~~~~~i~~~~~sp~~---~~la~~~~d~~~~~~~~--~~~~~~~~~ 291 (293)
||..+|+.+..+.... .....++++. ..+.+++.|+.++.++- |. .+|.++
T Consensus 145 ~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~-~~W~~~ 200 (369)
T 2hz6_A 145 YDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD-VLWIQN 200 (369)
T ss_dssp CCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC-EEEEEE
T ss_pred EECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCc-EEEEec
Confidence 9999998654443211 2233344432 45667777877776654 33 356553
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.09 E-value=1.4e-07 Score=75.69 Aligned_cols=209 Identities=10% Similarity=0.002 Sum_probs=136.4
Q ss_pred ceeecCcc--ccEEEEEECCCCCeEEEEeC--CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 13 SREYTGHK--KKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 13 ~~~~~~h~--~~v~~l~~s~~~~~l~s~~~--dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
.+++ .|. .....++|++++...++.+. ++.|++.|+.... ....+.+..+. ....+++. +..++++.-.+
T Consensus 12 v~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 12 LNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSY-FGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTC-CEEEEEEE--TTEEEEEETTC
T ss_pred EEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCc-ceEEEEEe--CCEEEEEEecC
Confidence 3444 354 34689999998755555554 6899999997542 22233333321 22344444 34566666668
Q ss_pred CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
+.+.++|..+.+.+..+... ....+.+++||+.++++..++++.++|.++.+.......+..-+.
T Consensus 86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p-------------- 150 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR-------------- 150 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE--------------
T ss_pred CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc--------------
Confidence 99999999998888777655 222345667888888877889999999998776665443211000
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-------------CCCeeEEEEccCCC-EEEEecCCC
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------------EWPVRTISFSHTGD-YIASASEDL 234 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~sp~~~-~l~s~s~d~ 234 (293)
-.....+.+. ++..++....++.|.+.|.++++.+..+.-. ....+.|+|+|+++ .++++....
T Consensus 151 -~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 151 -VIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp -CCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred -cccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 0012233444 5655666666789999999999888776421 12468999999986 557777888
Q ss_pred cEEEEEcCCC
Q 022716 235 FIDISNVHTG 244 (293)
Q Consensus 235 ~i~iw~~~~~ 244 (293)
.+...++.+.
T Consensus 229 ~v~~i~l~~~ 238 (266)
T 2iwa_A 229 KLFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEEC
T ss_pred eEEEEEEecc
Confidence 8888887553
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.09 E-value=1.8e-08 Score=85.10 Aligned_cols=227 Identities=14% Similarity=0.035 Sum_probs=133.7
Q ss_pred EEEECCCCCeEEEEe----------CCCcEEEeecCCCCCCceeEEEeeCCc-----CCeeEEEEcCCCCCEEEEEeC-C
Q 022716 25 SVAWNCTGTKLASGS----------VDQTARVWHIEPHGHGKVKDIELRGHA-----DSVDQLCWDPKHADLIATASG-D 88 (293)
Q Consensus 25 ~l~~s~~~~~l~s~~----------~dg~v~iw~~~~~~~~~~~~~~~~~h~-----~~i~~~~~~~~~~~~l~s~~~-d 88 (293)
.++++||++++..+. .++.|.+||..... ....+.+.+.. .....+.++|++..++++-.. +
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~ 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence 699999999998776 37899999997642 23333332100 123467889986554443323 4
Q ss_pred CeEEE--EeCCCCeeeeeeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEccc-----cceee----eecccceeeeeE
Q 022716 89 KTVRL--WDARSGKCSQQAELSGENINITYKPDGT-HIAVGNRDDELTILDVRK-----FKPIH----RRKFGYEVNEIA 156 (293)
Q Consensus 89 ~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~~-----~~~~~----~~~~~~~~~~v~ 156 (293)
..+.+ +|..+ ...+...+. ....|+++ .+++.+.|+++...|+.. .+... ....+.... .
T Consensus 147 ~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~ 218 (368)
T 1mda_H 147 AAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q 218 (368)
T ss_dssp CEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E
T ss_pred CeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c
Confidence 66888 88866 333332221 11224332 334445566766677654 21110 000000000 1
Q ss_pred EecCCCEEEEecC---------C-----------------------CCEEEEEECCCCCEEEEecC---------CCcEE
Q 022716 157 WNMTGEMFFLTTG---------N-----------------------AGCYCIAIDPMGRYFAVGSA---------DSLVS 195 (293)
Q Consensus 157 ~~~~~~~~~~~~~---------~-----------------------~~~~~~~~~~~~~~l~~gs~---------d~~i~ 195 (293)
.+.+..++.... . .....++++|+++.+.++.. ++.+.
T Consensus 219 -~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 219 -ANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp -ETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred -cccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 111111111000 0 00011678999887766532 23567
Q ss_pred EEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEec-CCCcEEEEEcCCCCEEEEEecCCCcceeEECC
Q 022716 196 LWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASAS-EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNP 263 (293)
Q Consensus 196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s-~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp 263 (293)
++|+.+.+.+..+.... ....++|+|||+ .+++.. .++.|.++|..+++.+..++....-..+++.+
T Consensus 298 ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 298 SVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred EEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeec
Confidence 99999998887765433 688999999998 456666 59999999999999999888666667777765
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.07 E-value=1.2e-08 Score=85.64 Aligned_cols=205 Identities=11% Similarity=0.055 Sum_probs=125.8
Q ss_pred CccccEEEEEECCCCCeEEEEeC-----CCcEEEeecCCCCCCceeEEEee----CCcCCeeEEEEcCCCCCEEEEEe--
Q 022716 18 GHKKKVHSVAWNCTGTKLASGSV-----DQTARVWHIEPHGHGKVKDIELR----GHADSVDQLCWDPKHADLIATAS-- 86 (293)
Q Consensus 18 ~h~~~v~~l~~s~~~~~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~----~h~~~i~~~~~~~~~~~~l~s~~-- 86 (293)
+|-..+..++++++|+..++-.. ++.|.+||+.... ....+.+. .+......+++.++++..+++-.
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence 46678999999999876665443 5789999986431 12223332 12234678888876555566665
Q ss_pred -CCCeEEEEeCCCCeeeeeeee------------------------------cCceEEEEEcCCCCEEEEEeCCC-eEEE
Q 022716 87 -GDKTVRLWDARSGKCSQQAEL------------------------------SGENINITYKPDGTHIAVGNRDD-ELTI 134 (293)
Q Consensus 87 -~d~~i~vwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~l~~~~~d~-~i~l 134 (293)
.++.|.+||..+++....... ...+..++++|+|+.|+++..++ .+..
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~ 221 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYR 221 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEE
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEE
Confidence 688999999987754332211 01245689999999888887665 4444
Q ss_pred EEccccce--eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec-c
Q 022716 135 LDVRKFKP--IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK-L 211 (293)
Q Consensus 135 ~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~ 211 (293)
++...... .........+.. . ........++++++|+++++...++.|.+||.++++....... .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~-----------~-g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~ 289 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIER-----------Y-SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK 289 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEE-----------E-EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred EEHHHhcCCCCChhhhhcceEe-----------c-ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence 44321000 000000000000 0 0011223478899999999999999999999856653322222 1
Q ss_pred CCCeeEEEEccCCCEEEEecCCCcE
Q 022716 212 EWPVRTISFSHTGDYIASASEDLFI 236 (293)
Q Consensus 212 ~~~v~~l~~sp~~~~l~s~s~d~~i 236 (293)
...+.+++|.++++++++.+..+.+
T Consensus 290 ~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 290 LSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp GSCEEEEEECTTSCEEEEECCGGGS
T ss_pred eecCCeeEECCCCcEEEEeCccccc
Confidence 3468999999999888887765544
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.07 E-value=1.4e-06 Score=70.17 Aligned_cols=220 Identities=6% Similarity=-0.013 Sum_probs=136.0
Q ss_pred ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
..+..++|++++..|. +-..++.|..++++... .. ............+++.+.+..++++-...+.|.+++.+..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~-~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PT-TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CE-EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cE-EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 4578999999776665 44457899999886422 11 1122222456788888866666666667889999998654
Q ss_pred eeeeeeeec-CceEEEEEcCCCCEEEEEeC---CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 100 KCSQQAELS-GENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
......... ..+..++++|++..|..+.. .+.|..+++..... . .+....-.....
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~-------------------~~~~~~~~~P~g 171 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R-------------------ILAQDNLGLPNG 171 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E-------------------EEECTTCSCEEE
T ss_pred CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E-------------------EEEECCCCCCcE
Confidence 322222222 45678999997666555543 35777777643211 0 001111234567
Q ss_pred EEECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCC
Q 022716 176 IAIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRA 254 (293)
Q Consensus 176 ~~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~ 254 (293)
++++|++.. +++-...+.|..+|.........+... .....++.. .+...++....+.|..+|..+++.+..+....
T Consensus 172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~ 249 (267)
T 1npe_A 172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK 249 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSS
T ss_pred EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcccc
Confidence 888887654 455566788999998754433333322 334566653 34444555567889999999998888776432
Q ss_pred --CcceeEECCCCC
Q 022716 255 --AMNSVEWNPKYN 266 (293)
Q Consensus 255 --~i~~~~~sp~~~ 266 (293)
....+++.|++.
T Consensus 250 ~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 250 QTRLYGITIALSQC 263 (267)
T ss_dssp CCCCCCEEEECSCC
T ss_pred ccccceeeecCccC
Confidence 366788888763
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=7.1e-11 Score=100.33 Aligned_cols=202 Identities=8% Similarity=0.046 Sum_probs=110.5
Q ss_pred CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc
Q 022716 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110 (293)
Q Consensus 31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 110 (293)
++..+++++.||.|+.||..+.. ...... . ..+.+..+..+ +.++++++.|+.+..||..+++.+........
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~--~~W~~~--~--~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS--IKWTLK--E--DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC--EEEEEE--C--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--EEEEec--C--CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 57789999999999999987532 222222 2 23333333333 34677778999999999988876544332211
Q ss_pred --eE-EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716 111 --NI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187 (293)
Q Consensus 111 --~~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (293)
.. +..+. ++..+++++.++.+..||.++.+.......+. ...+.|++..+++
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------------------------~~~~~p~~~~v~~ 135 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------------------------ADSLSPSTSLLYL 135 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------------------------EEE
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------------------------cccccccCCEEEE
Confidence 10 11111 34567788889999999998766543221110 1223457888899
Q ss_pred ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCC---CEEEEecCCCcEEEEEcCCCCEEEEEecCCCcce-eEECC
Q 022716 188 GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTG---DYIASASEDLFIDISNVHTGRTVHQIPCRAAMNS-VEWNP 263 (293)
Q Consensus 188 gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~---~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~~-~~~sp 263 (293)
++.|+.|+.||.++++.+-.+.... .....++++. ..++.++.|+.++.||..+|+.+.......++.. ..+++
T Consensus 136 ~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~ 213 (369)
T 2hz6_A 136 GRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQR 213 (369)
T ss_dssp EEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTT
T ss_pred EecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecC
Confidence 9999999999998876543332111 1222333332 5677788999999999999998887776666544 34566
Q ss_pred CCC
Q 022716 264 KYN 266 (293)
Q Consensus 264 ~~~ 266 (293)
++.
T Consensus 214 dg~ 216 (369)
T 2hz6_A 214 EGL 216 (369)
T ss_dssp SSC
T ss_pred Cce
Confidence 664
No 233
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.02 E-value=4.8e-08 Score=89.79 Aligned_cols=189 Identities=12% Similarity=0.047 Sum_probs=117.8
Q ss_pred CCcCCeeEEEEcCCCCCEEEEEeC----CCeEEEEeCCCCeeeeeeeecCc-eEEEEEcCCCCEEEEEeCCC--------
Q 022716 64 GHADSVDQLCWDPKHADLIATASG----DKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDD-------- 130 (293)
Q Consensus 64 ~h~~~i~~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~-------- 130 (293)
+|...+..+.|+|++..++++.+. +..|++||+.+++.+.. ..... ...++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 345567888999986545554433 35699999999886543 22222 3467899 999999988774
Q ss_pred -----eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC---CCCEEEEEECCCCCEEEEec----CCCcEEEEe
Q 022716 131 -----ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG---NAGCYCIAIDPMGRYFAVGS----ADSLVSLWD 198 (293)
Q Consensus 131 -----~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~gs----~d~~i~iwd 198 (293)
.|.+|++.+...... .+.... ......+.++|++++|+... .++.|+++|
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~------------------~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDR------------------LVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCE------------------EEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred cCCCcEEEEEECCCCcccce------------------EEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 377777765332111 111111 12245678899999875443 235899999
Q ss_pred CCCCE-EEEEeeccCCCeeEEEEccCCCEEE-EecCC---CcEEEEEcCCCCE---EEEEecCCCcceeEECCCCCeEEE
Q 022716 199 ISEML-CVRTFTKLEWPVRTISFSHTGDYIA-SASED---LFIDISNVHTGRT---VHQIPCRAAMNSVEWNPKYNLLAY 270 (293)
Q Consensus 199 ~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~-s~s~d---~~i~iw~~~~~~~---~~~~~~~~~i~~~~~sp~~~~la~ 270 (293)
+.++. ....+..+....... ++++|..|+ ....| +.|..+++.++.. ....++...+. .|+|++++|+.
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence 87652 234455555555554 667766554 44343 5689999987654 23344444443 99999999888
Q ss_pred EEcCC
Q 022716 271 AGDDK 275 (293)
Q Consensus 271 ~~~d~ 275 (293)
...+.
T Consensus 343 ~~~~~ 347 (693)
T 3iuj_A 343 EYMVD 347 (693)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 87653
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.02 E-value=8.1e-08 Score=84.81 Aligned_cols=237 Identities=11% Similarity=0.036 Sum_probs=145.6
Q ss_pred CCCCeEEEEeC-CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEE-c-CCCCCEEEEEe------------------CC
Q 022716 30 CTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D-PKHADLIATAS------------------GD 88 (293)
Q Consensus 30 ~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~-~-~~~~~~l~s~~------------------~d 88 (293)
+||++|..... ++.|.+-|++... ....+.++. ......+++ . |++ .+++.++ .+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~--~~~ii~ip~-g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMK--CDAILEIPN-AKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTE--EEEEEECSS-CCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCce--EeeEEeCCC-CCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccC
Confidence 48888765554 5678899987542 222223332 123556666 3 654 4555553 24
Q ss_pred CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC---------------eEEEEEccccceeee---ecccc
Q 022716 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD---------------ELTILDVRKFKPIHR---RKFGY 150 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---------------~i~l~d~~~~~~~~~---~~~~~ 150 (293)
+.+.+.|..+.+...++...+.+-.++++|+|+++++.+.+. .+.+.|.......-. ...-.
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred ceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 679999999988888777767777899999999999988653 355555432211000 00000
Q ss_pred eeeeeEEecCC---CE-EEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCCCE------------EEEEeeccCC
Q 022716 151 EVNEIAWNMTG---EM-FFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEML------------CVRTFTKLEW 213 (293)
Q Consensus 151 ~~~~v~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~~------------~~~~~~~~~~ 213 (293)
.+.- .+... .. ..........-++.++|||++++++ -.+++|.++|+.+.. ...+. ....
T Consensus 255 ~V~V--ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~ 331 (595)
T 1fwx_A 255 GVKV--VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGL 331 (595)
T ss_dssp TEEE--EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCS
T ss_pred cEEE--EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCC
Confidence 1111 11111 11 1111111233468899999976555 468899999998642 22222 2335
Q ss_pred CeeEEEEccCCCEEEEecCCCcEEEEEcCC----------CCEEEEEecCCCc------ceeEECCCCCeEEEEEc
Q 022716 214 PVRTISFSHTGDYIASASEDLFIDISNVHT----------GRTVHQIPCRAAM------NSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~----------~~~~~~~~~~~~i------~~~~~sp~~~~la~~~~ 273 (293)
....++|+|+|...++.-.|+.|.+||+.+ .+.+.+++-+-.. ..+..+|||++|.++..
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 688999999994445667899999999977 4556666543222 34567899999988875
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=6.5e-07 Score=76.51 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=124.1
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCC----eeeeeee---e----c-CceEEEEEcCCCCEEEEEeCC------CeEEEEEc
Q 022716 76 PKHADLIATASGDKTVRLWDARSG----KCSQQAE---L----S-GENINITYKPDGTHIAVGNRD------DELTILDV 137 (293)
Q Consensus 76 ~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~---~----~-~~~~~~~~~~~~~~l~~~~~d------~~i~l~d~ 137 (293)
++...+++++..++.|.++|+.+. +....++ . . ..+..+...|+| .+++...+ +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 555557777888999999998754 3333332 1 1 134567888999 66666555 78999999
Q ss_pred cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-------------------CCCcEEEEe
Q 022716 138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-------------------ADSLVSLWD 198 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-------------------~d~~i~iwd 198 (293)
++++.+.+...+... ..--+.+.++|+++.+++.. ...+|.+||
T Consensus 172 ~T~~v~~~~~~~~~~-----------------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 172 YSFEPLGKWEIDRGD-----------------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp TTCCEEEECCSBCTT-----------------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred CCCeEEEEEccCCCC-----------------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 988877665432110 01112355678888777774 368999999
Q ss_pred CCCCEEEEEeecc-C-CCeeEEEE--ccCCCEEEEec------CCCcEEEEEcCCCCE--EEEE--ec------------
Q 022716 199 ISEMLCVRTFTKL-E-WPVRTISF--SHTGDYIASAS------EDLFIDISNVHTGRT--VHQI--PC------------ 252 (293)
Q Consensus 199 ~~~~~~~~~~~~~-~-~~v~~l~~--sp~~~~l~s~s------~d~~i~iw~~~~~~~--~~~~--~~------------ 252 (293)
+.+++.+.++.-- . .....+.| +|+++++..+. .++.|.+|....++. +..+ ..
T Consensus 235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence 9998777766532 1 23556666 99999886665 566787766655431 1111 11
Q ss_pred -----CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 253 -----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 253 -----~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
......|.+|||+++|-++... .+.+++|+++
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnrg-------~d~VavfdV~ 351 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLWG-------IGEVRQYDIS 351 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEETT-------TTEEEEEECS
T ss_pred ccccCCCceeEEEECCCCCEEEEEeCC-------CCEEEEEEec
Confidence 1346789999999988877653 3566777653
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=4.6e-07 Score=82.89 Aligned_cols=198 Identities=13% Similarity=0.123 Sum_probs=126.3
Q ss_pred EEEEcCCCCCEEEEEeCCC-------------------eEEEEeCCCCeeeeeeeecC----------ceEEEEEcCCC-
Q 022716 71 QLCWDPKHADLIATASGDK-------------------TVRLWDARSGKCSQQAELSG----------ENINITYKPDG- 120 (293)
Q Consensus 71 ~~~~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~- 120 (293)
.+++.|+. .+++.+..++ .|..+|.++++.+-.++... .+.-+....+|
T Consensus 247 ~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 247 SMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred ceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 45667764 5666666554 48999999998776655421 22333444577
Q ss_pred --CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEE-----------Eec----CCCCEEEEEECCCCC
Q 022716 121 --THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF-----------LTT----GNAGCYCIAIDPMGR 183 (293)
Q Consensus 121 --~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~ 183 (293)
+.++.++.+|.+.++|.++.+.+....+...-..-.++..+.... ..+ +...-..++++|+..
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 678889999999999999988766544321100001111111111 000 000011356667666
Q ss_pred EEEEecC-------------------------------------------CCcEEEEeCCCCEEEEEeeccCCCeeEEEE
Q 022716 184 YFAVGSA-------------------------------------------DSLVSLWDISEMLCVRTFTKLEWPVRTISF 220 (293)
Q Consensus 184 ~l~~gs~-------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 220 (293)
++.+... .+.|..||+.+++.+-++. +..++....+
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~ 484 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTL 484 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcce
Confidence 6655432 2789999999998776654 3445555667
Q ss_pred ccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCc--ceeEECCCCCeEEE
Q 022716 221 SHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM--NSVEWNPKYNLLAY 270 (293)
Q Consensus 221 sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i--~~~~~sp~~~~la~ 270 (293)
++++..++.++.|+.+++||..+|+.+..+.....+ ..+.|.++|++++.
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 788889999999999999999999999888755443 34778888865443
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=3.6e-07 Score=83.63 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=149.9
Q ss_pred CCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-CCc--CCeeE-EEEcCCCCCEEEEEeC------CCeEEEEeCCCCe
Q 022716 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHA--DSVDQ-LCWDPKHADLIATASG------DKTVRLWDARSGK 100 (293)
Q Consensus 31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-~h~--~~i~~-~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~ 100 (293)
++..++.++.|+.+..+|..+.. ........ ... ..+.. ... .+ ..++.++. ++.|+.+|..+++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~~p~v--~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGK--EVWHQNTFEGQKGSLTITGAPRV--FK-GKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC--EEEEEETTTTCCSSCBCCSCCEE--ET-TEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ECCEEEEEcCCCEEEEEECCCCC--EEeeecCCcCcCcCcccccCcEE--EC-CEEEEEecccccCCCCEEEEEECCCCc
Confidence 35678888899999999986532 22222221 000 11111 111 12 34444443 7899999999998
Q ss_pred eeeeeeecCce---------------------------------EEEEEcCCCCEEEEEeCCC-----------------
Q 022716 101 CSQQAELSGEN---------------------------------INITYKPDGTHIAVGNRDD----------------- 130 (293)
Q Consensus 101 ~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~d~----------------- 130 (293)
.+-.+...... ..++++|++..++.++.++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 77655432111 2467888888888887664
Q ss_pred --eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCC---CEEEEecCCCcEEEEeCCCCEEE
Q 022716 131 --ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMG---RYFAVGSADSLVSLWDISEMLCV 205 (293)
Q Consensus 131 --~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~gs~d~~i~iwd~~~~~~~ 205 (293)
.|..+|.++.+..-....... -.|+.. . ......+....+| ..++.++.+|.++++|.++++.+
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~---d~wd~~-------~-~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l 350 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPG---DNWDYT-------S-TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI 350 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTT---CCSCCC-------C-CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eEEEEEEECCCCCEEEEEecCCC---cccccc-------c-CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence 477777776654332221100 001100 0 0112223333466 67899999999999999999877
Q ss_pred EEeeccCC-----------Ce------------------------eEEEEccCCCEEEEecC------------------
Q 022716 206 RTFTKLEW-----------PV------------------------RTISFSHTGDYIASASE------------------ 232 (293)
Q Consensus 206 ~~~~~~~~-----------~v------------------------~~l~~sp~~~~l~s~s~------------------ 232 (293)
-.+..... ++ ..++|+|++.+++....
T Consensus 351 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~ 430 (677)
T 1kb0_A 351 SAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAG 430 (677)
T ss_dssp EEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCC
T ss_pred ccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccc
Confidence 65432110 01 25788999888877543
Q ss_pred -------------------------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE-E
Q 022716 233 -------------------------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF-R 286 (293)
Q Consensus 233 -------------------------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~-~ 286 (293)
.+.|..||..+++.+-.++...+.....+.+.+..+.+++.|+.++.+|..+. .
T Consensus 431 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 431 PGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp TTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 27799999999998888877777777778888888888888877766664333 3
Q ss_pred EEee
Q 022716 287 IYGF 290 (293)
Q Consensus 287 ~~~~ 290 (293)
+|.+
T Consensus 511 lw~~ 514 (677)
T 1kb0_A 511 LWEA 514 (677)
T ss_dssp EEEE
T ss_pred eeee
Confidence 3444
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.93 E-value=2.5e-07 Score=84.84 Aligned_cols=245 Identities=10% Similarity=0.117 Sum_probs=148.9
Q ss_pred CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcC--CCCCEEEEEe------CCCeEEEEeCCCCeeee
Q 022716 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP--KHADLIATAS------GDKTVRLWDARSGKCSQ 103 (293)
Q Consensus 32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~~l~s~~------~d~~i~vwd~~~~~~~~ 103 (293)
+..++.++.|+.|..+|..+.. .........+......+...| .+. .++.++ .++.|..||.++++.+-
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~--~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQ--RAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--EEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEccCCEEEEEECCCCC--EeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 5578888899999999986532 223322210111101111111 122 344443 37899999999998765
Q ss_pred eeeec-C------------------------------c-eEEEEEcCCCCEEEEEeCCCe-------------------E
Q 022716 104 QAELS-G------------------------------E-NINITYKPDGTHIAVGNRDDE-------------------L 132 (293)
Q Consensus 104 ~~~~~-~------------------------------~-~~~~~~~~~~~~l~~~~~d~~-------------------i 132 (293)
.+... . . -..+++.|++..++.++.++. +
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 54421 0 0 014678888888988887764 8
Q ss_pred EEEEccccceeeeeccc-ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC---EEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 133 TILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 133 ~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
..+|.++.+..-..... ... |+.. .........+..+|+ .++.++.+|.++++|.++++.+...
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~----wd~~--------~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDA----WDYT--------ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCC----SCCC--------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEccCCceeEeeecCCccc----cccc--------CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 88888876654332211 110 1100 001111222223454 7889999999999999999876332
Q ss_pred eccC--C-------------------------------------CeeEEEEccCCCEEEEecC-----------------
Q 022716 209 TKLE--W-------------------------------------PVRTISFSHTGDYIASASE----------------- 232 (293)
Q Consensus 209 ~~~~--~-------------------------------------~v~~l~~sp~~~~l~s~s~----------------- 232 (293)
.... + ....++|+|+..+++..+.
T Consensus 346 ~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~ 425 (689)
T 1yiq_A 346 GIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNP 425 (689)
T ss_dssp ESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCS
T ss_pred cccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccc
Confidence 1110 0 0123788898887776522
Q ss_pred ----------------------------CCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716 233 ----------------------------DLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV 284 (293)
Q Consensus 233 ----------------------------d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~ 284 (293)
++.|..||..+|+.+-+++...+...-.+.+.+.++++++.|+.++.+|..+
T Consensus 426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t 505 (689)
T 1yiq_A 426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADT 505 (689)
T ss_dssp CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCC
Confidence 3779999999999988887777777667888888999998887777766544
Q ss_pred E-EEEeee
Q 022716 285 F-RIYGFE 291 (293)
Q Consensus 285 ~-~~~~~~ 291 (293)
- .+|.++
T Consensus 506 G~~lw~~~ 513 (689)
T 1yiq_A 506 GEKLWEQP 513 (689)
T ss_dssp CCEEEEEE
T ss_pred Cccceeee
Confidence 4 345553
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.92 E-value=6.9e-07 Score=70.92 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=121.4
Q ss_pred eeecCccc--cEEEEEECCCCCeEEEEeCCC--cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC
Q 022716 14 REYTGHKK--KVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (293)
Q Consensus 14 ~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~ 89 (293)
++| .|.. -...|.|+ ++....+.+.+| .|+.+|+++.. ......+... ..--.++. .+..+++..-.++
T Consensus 35 ~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l~~~-~FgeGit~--~g~~ly~ltw~~~ 107 (262)
T 3nol_A 35 HSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK--TLQQIELGKR-YFGEGISD--WKDKIVGLTWKNG 107 (262)
T ss_dssp EEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC--EEEEEECCTT-CCEEEEEE--ETTEEEEEESSSS
T ss_pred EEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc--EEEEEecCCc-cceeEEEE--eCCEEEEEEeeCC
Confidence 444 5553 35899998 676667888776 89999987542 2223333221 11122333 3345555555689
Q ss_pred eEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccc---ceeeeeEEecCCCEEEE
Q 022716 90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~ 166 (293)
.+.++|..+.+.+..+........+ .+|++.|+....++++.++|..+.+.......+ .++.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~------------- 172 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP------------- 172 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC-------------
T ss_pred EEEEEECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc-------------
Confidence 9999999999988887766544444 467787777777889999999988776654432 1110
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc------------CCCeeEEEEccCCCEEEEec
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL------------EWPVRTISFSHTGDYIASAS 231 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~------------~~~v~~l~~sp~~~~l~s~s 231 (293)
.+..+.+. +|+.++..-.++.|.+.|.++++.+..+.-. ..-.+.|+|+|+++.|...+
T Consensus 173 -----~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 173 -----ELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -----CEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -----ccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 01122332 5666665556788999999999887765421 12468899999876654433
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.90 E-value=8.2e-07 Score=81.44 Aligned_cols=201 Identities=11% Similarity=0.153 Sum_probs=124.7
Q ss_pred EEEEcCCCCCEEEEEeCCCe-------------------EEEEeCCCCeeeeeeeecC----------ceEEEEEcCCCC
Q 022716 71 QLCWDPKHADLIATASGDKT-------------------VRLWDARSGKCSQQAELSG----------ENINITYKPDGT 121 (293)
Q Consensus 71 ~~~~~~~~~~~l~s~~~d~~-------------------i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 121 (293)
.+++.|+. .+++.+..++. |..+|.++++.+-.++... ..+-.....+|+
T Consensus 239 ~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 45677754 57777877763 9999999998876655321 122222333565
Q ss_pred ---EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEe----------------cCCCEEEEecC---CCCEEEEEEC
Q 022716 122 ---HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN----------------MTGEMFFLTTG---NAGCYCIAID 179 (293)
Q Consensus 122 ---~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~----------------~~~~~~~~~~~---~~~~~~~~~~ 179 (293)
.++.++.+|.+.++|.++.+.+....+.........+ +.+....+... ...-..++++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 7888899999999999998876544332100000000 01111111000 0001124555
Q ss_pred CCCCEEEEec---------------------------------------------CCCcEEEEeCCCCEEEEEeeccCCC
Q 022716 180 PMGRYFAVGS---------------------------------------------ADSLVSLWDISEMLCVRTFTKLEWP 214 (293)
Q Consensus 180 ~~~~~l~~gs---------------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~ 214 (293)
|+..++.+.+ .+|.|..||+.+++.+-++..+ .+
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~ 476 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TI 476 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SS
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CC
Confidence 5555544431 1478999999999877666443 34
Q ss_pred eeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCc--ceeEECCCCCe-EEEEEc
Q 022716 215 VRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM--NSVEWNPKYNL-LAYAGD 273 (293)
Q Consensus 215 v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i--~~~~~sp~~~~-la~~~~ 273 (293)
+..-.++..+.+++.|+.|+.++.||.++|+.+.++.....+ ..+.|..+|.+ +++.+.
T Consensus 477 ~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 477 FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 444466778889999999999999999999999887665444 35888888864 554443
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.88 E-value=1.7e-06 Score=68.76 Aligned_cols=193 Identities=15% Similarity=0.073 Sum_probs=124.8
Q ss_pred eeecCcc--ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 14 REYTGHK--KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 14 ~~~~~h~--~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
++| .|. .-...|.|+ ++...++.+.+|.|+++|+++... ...+ +... ..--.++. .+..+++..-.++.+
T Consensus 47 ~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv--~~~~-l~~~-~FgeGit~--~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 47 REY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQP--VWME-RLGN-IFAEGLAS--DGERLYQLTWTEGLL 118 (268)
T ss_dssp EEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSC--SEEE-ECTT-CCEEEEEE--CSSCEEEEESSSCEE
T ss_pred EEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcE--EeEE-CCCC-cceeEEEE--eCCEEEEEEccCCEE
Confidence 444 454 345889987 456667888899999999986532 2223 4321 11122444 345676666679999
Q ss_pred EEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
.++|..+.+.+..+........++ +|++.|+.+..++++.++|.++.+..........-..+ .
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---------------~ 181 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---------------E 181 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---------------C
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---------------c
Confidence 999999999888877665544444 67888888878999999999988776655432110000 0
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-------------CCCeeEEEEccCCC-EEEEecC
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------------EWPVRTISFSHTGD-YIASASE 232 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~sp~~~-~l~s~s~ 232 (293)
.+.-+.+. +|+.++..-.++.|.+.|.++++.+..+.-. ..-.+.|+|+|+++ +++||-.
T Consensus 182 ~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 182 LINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred cccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 11122332 5666665656788999999999887765321 13568899999765 5566543
No 242
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.81 E-value=5.7e-06 Score=65.07 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=122.5
Q ss_pred ceeecCcc--ccEEEEEECCCCCeEEEEeCCC--cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC
Q 022716 13 SREYTGHK--KKVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (293)
Q Consensus 13 ~~~~~~h~--~~v~~l~~s~~~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d 88 (293)
.++| .|. +-...|.|++ +....+.+.+| .|+.+|+++.. ......+..+. .--.++. .+..++...-.+
T Consensus 12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk--v~~~~~l~~~~-fgeGi~~--~~~~ly~ltw~~ 84 (243)
T 3mbr_X 12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR--ILQRAEVPPPY-FGAGIVA--WRDRLIQLTWRN 84 (243)
T ss_dssp EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC--EEEEEECCTTC-CEEEEEE--ETTEEEEEESSS
T ss_pred EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCC--EEEEEeCCCCc-ceeEEEE--eCCEEEEEEeeC
Confidence 3445 565 4578999986 55666777654 89999997542 22333333321 1122333 234566666668
Q ss_pred CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
+.+.++|.++.+.+..+........++ ++++.|+.+..++++.++|..+.+.......+..-..+
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~------------- 149 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL------------- 149 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC-------------
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc-------------
Confidence 999999999999888887766554554 66777777777899999999988776665432100000
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeecc-------------CCCeeEEEEccCCCEE-EEecC
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL-------------EWPVRTISFSHTGDYI-ASASE 232 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~sp~~~~l-~s~s~ 232 (293)
..+.-+.+. +|+.++..-.++.|.+.|.++++.+..+.-. ..-.+.|+++|+++.| +||-.
T Consensus 150 --~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 150 --DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp --CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred --ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 001112222 5555655556778999999999887765411 1246889999986654 55543
No 243
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.78 E-value=7.4e-06 Score=69.25 Aligned_cols=232 Identities=11% Similarity=0.105 Sum_probs=131.4
Q ss_pred CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCc
Q 022716 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110 (293)
Q Consensus 31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 110 (293)
++..++.++.|+.|..+|..+.. ......+... ........ ...++.++.++.+..+|..+++.+........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~--~~W~~~~~~~--~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~ 174 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGT--VAWQTKVAGE--ALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMP 174 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCC--EEEEEECSSC--CCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--EEEEEeCCCc--eEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence 45577788889999999986432 2222222221 11111111 24677788899999999999987766554333
Q ss_pred eE------EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeeccccee-----e---eeEEec--CCCEEEEecCCCCE-
Q 022716 111 NI------NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-----N---EIAWNM--TGEMFFLTTGNAGC- 173 (293)
Q Consensus 111 ~~------~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~-----~---~v~~~~--~~~~~~~~~~~~~~- 173 (293)
.. ..... +..+++++.++.+..+|.++.+........... . .+.-.| .+..+++......+
T Consensus 175 ~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 175 SLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT 252 (376)
T ss_dssp ----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred ceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence 21 11222 356788888999999999877655443321100 0 000000 01122222212111
Q ss_pred ------------------EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEecCCC
Q 022716 174 ------------------YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASASEDL 234 (293)
Q Consensus 174 ------------------~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~s~d~ 234 (293)
..+.. ++..+.+++.++.|..+|.++++.+-...... ..+.+... .+..|+.++.++
T Consensus 253 ~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g 328 (376)
T 3q7m_A 253 ALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEG 328 (376)
T ss_dssp EEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTS
T ss_pred EEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCC
Confidence 22222 35667778889999999999987765544222 12222222 356788889999
Q ss_pred cEEEEEcCCCCEEEEEec-CCCcce-eEECCCCCeEEEEEcCCCC
Q 022716 235 FIDISNVHTGRTVHQIPC-RAAMNS-VEWNPKYNLLAYAGDDKNK 277 (293)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~-~~~i~~-~~~sp~~~~la~~~~d~~~ 277 (293)
.+..+|..+++.+..... ...+.+ ... .+..|..++.++.+
T Consensus 329 ~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l 371 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTV 371 (376)
T ss_dssp EEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCE
T ss_pred eEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEE
Confidence 999999999998876654 233322 222 24466666666443
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=1.1e-05 Score=64.80 Aligned_cols=191 Identities=12% Similarity=0.034 Sum_probs=111.4
Q ss_pred CeEEEEeCCCcEEEeecCCCCCCcee-EEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeec-Cc
Q 022716 33 TKLASGSVDQTARVWHIEPHGHGKVK-DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GE 110 (293)
Q Consensus 33 ~~l~s~~~dg~v~iw~~~~~~~~~~~-~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~ 110 (293)
++|+.+.. +.|+.++++........ ...+.........+++.+.+..++++-..++.|.+++............. ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 45555553 47888887643211100 00111112346788898876667777777889999998765433222211 45
Q ss_pred eEEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEE-EEe
Q 022716 111 NINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYF-AVG 188 (293)
Q Consensus 111 ~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g 188 (293)
+..+++.|++..+..+ ...++|..+++....... ...........++++|++..| ++.
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~--------------------~~~~~~~~P~~i~vd~~~g~lyv~~ 140 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV--------------------LFDTGLVNPRGIVTDPVRGNLYWTD 140 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--------------------EECSSCSSEEEEEEETTTTEEEEEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE--------------------EEECCCCCccEEEEeeCCCEEEEEE
Confidence 6789999976655554 456788888875422110 011111345678888865444 443
Q ss_pred cC--CCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCCC
Q 022716 189 SA--DSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTGR 245 (293)
Q Consensus 189 s~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~~ 245 (293)
.. .+.|..+++.... ...+. ........++++|++..| ++....+.|.+++.....
T Consensus 141 ~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 141 WNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp CCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred CCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 33 4678888875432 22222 222467899999987665 555567889999986543
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.77 E-value=8.2e-08 Score=84.77 Aligned_cols=203 Identities=12% Similarity=0.057 Sum_probs=136.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeeeeeee--cCceEEEEE-c-CCCCEEEEEeC------------------CCeEEE
Q 022716 77 KHADLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITY-K-PDGTHIAVGNR------------------DDELTI 134 (293)
Q Consensus 77 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~l~~~~~------------------d~~i~l 134 (293)
++..++++...+..|.+.|+++.++...++. ...+..+++ + |++++++++++ ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 3444566666688899999999998875554 344667777 5 99999999852 457899
Q ss_pred EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE-------------EEE--------EECCCCCEEEEecCCCc
Q 022716 135 LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC-------------YCI--------AIDPMGRYFAVGSADSL 193 (293)
Q Consensus 135 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------~~~--------~~~~~~~~l~~gs~d~~ 193 (293)
+|..+.+...+...+.....+..++++...+.++.++.. ... .+.++|++.-. +.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~ 255 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL----NG 255 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE----TT
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE----Cc
Confidence 999988877777665566778888888888887754310 111 12245544333 45
Q ss_pred EEEEeCCC--CEE-EEEeeccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCCCC------------EEEEEecCCCcc
Q 022716 194 VSLWDISE--MLC-VRTFTKLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTGR------------TVHQIPCRAAMN 257 (293)
Q Consensus 194 i~iwd~~~--~~~-~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~~~------------~~~~~~~~~~i~ 257 (293)
|.+.|.++ +.. +..+.. ......+.++|||++++.+ ..+..|.++|+.+.+ ..........-.
T Consensus 256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~ 334 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 334 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence 99999987 433 334432 3456889999999987555 478999999998652 334444455677
Q ss_pred eeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 258 SVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 258 ~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
-++|+|+|..+.+.-.| +.+-+|++++
T Consensus 335 h~aF~~dG~aY~t~~ld--------sqV~kwdi~~ 361 (595)
T 1fwx_A 335 HTAFDGRGNAYTSLFLD--------SQVVKWNIED 361 (595)
T ss_dssp EEEECTTSEEEEEETTT--------TEEEEEEHHH
T ss_pred eEEECCCCeEEEEEecC--------CcEEEEEhhH
Confidence 89999999322333233 4555577664
No 246
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.75 E-value=5.6e-06 Score=75.57 Aligned_cols=247 Identities=11% Similarity=0.040 Sum_probs=135.3
Q ss_pred EEEECC-CCCeEEEEeCCC-----------cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeC-CCeE
Q 022716 25 SVAWNC-TGTKLASGSVDQ-----------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DKTV 91 (293)
Q Consensus 25 ~l~~s~-~~~~l~s~~~dg-----------~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~-d~~i 91 (293)
..++.+ +|+.++.|+.++ .+.+||...+......... ..+......+++.++ +.+++.|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~~-g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGN-GQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECTT-SCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-CCCCCccccccCCCC-CCEEEeCCCCCCce
Confidence 455566 888888888653 5788988765433332211 123333444555554 467888874 5689
Q ss_pred EEEeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEe-CC-----CeEEEEEccccceeee-----eccc---------
Q 022716 92 RLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGN-RD-----DELTILDVRKFKPIHR-----RKFG--------- 149 (293)
Q Consensus 92 ~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-~d-----~~i~l~d~~~~~~~~~-----~~~~--------- 149 (293)
.+||..+.+....-..... ..+++..++|+.++.|+ .+ ..+.+||+.+..-... ....
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence 9999887765433222211 12455667999999988 34 4688999876442221 0000
Q ss_pred --cee----------------ee-eEEecCCCEEEE--ecC---------CCCEEEEEEC-CCCCEEEEecCCC------
Q 022716 150 --YEV----------------NE-IAWNMTGEMFFL--TTG---------NAGCYCIAID-PMGRYFAVGSADS------ 192 (293)
Q Consensus 150 --~~~----------------~~-v~~~~~~~~~~~--~~~---------~~~~~~~~~~-~~~~~l~~gs~d~------ 192 (293)
..+ .. ..|++....... ... ...-.++.+. .++++++.|+.++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 000 00 112221111000 000 0011233332 3678888888543
Q ss_pred -----cEEEEeCCCCEEEEEe--eccCCC-eeEEEEccCCCEEEEecCC-----------CcEEEEEcCCCCEEE--EEe
Q 022716 193 -----LVSLWDISEMLCVRTF--TKLEWP-VRTISFSHTGDYIASASED-----------LFIDISNVHTGRTVH--QIP 251 (293)
Q Consensus 193 -----~i~iwd~~~~~~~~~~--~~~~~~-v~~l~~sp~~~~l~s~s~d-----------~~i~iw~~~~~~~~~--~~~ 251 (293)
.|.+||..+..-.... .-.... -.+....|+++.++.|+.+ ..+.+||..+.+-.. .++
T Consensus 428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~ 507 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS 507 (656)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC
Confidence 6888888765433322 111122 2344567899999999854 458899998754322 112
Q ss_pred c-CCCcceeEECCCCCeEEEEEc
Q 022716 252 C-RAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 252 ~-~~~i~~~~~sp~~~~la~~~~ 273 (293)
. +.......+.|++.++++||.
T Consensus 508 ~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 508 IVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCCCTTEEEEECTTSCEEEEECC
T ss_pred CccccccHhhcCCCcEEEecCCC
Confidence 1 112223556799999999995
No 247
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.70 E-value=3.8e-05 Score=64.82 Aligned_cols=236 Identities=8% Similarity=0.020 Sum_probs=134.3
Q ss_pred CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC-------cCCee-EEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-------ADSVD-QLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (293)
Q Consensus 31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h-------~~~i~-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 102 (293)
++..+..++.++.|..+|.++.. ......+... ...+. .... . ...++.++.++.+..+|..+++..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGK--EIWSVSLAEKDGWFSKEPALLSGGVTV--S-GGHVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCC--EEEEEECCC---CCSCCCCCEEEEEEE--E-TTEEEEEETTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCc--eeeeecCccccccccccCcccccCceE--e-CCEEEEEcCCCEEEEEECCCCCEE
Confidence 35678888889999999986432 2223332211 12222 2222 2 346777889999999999999877
Q ss_pred eeeeecCceEE-EEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee------eeEEecCCCEEEEecCCCCEEE
Q 022716 103 QQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN------EIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 103 ~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
........... .... +..+++++.++.+..+|.++.+.+.......... ..... +..+++......+.+
T Consensus 127 W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 127 WQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp EEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred EEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 66555443221 1222 4578888889999999998776554433221110 00000 111111111111111
Q ss_pred E----------------------------EECC--CCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC
Q 022716 176 I----------------------------AIDP--MGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD 225 (293)
Q Consensus 176 ~----------------------------~~~~--~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 225 (293)
+ ...| .+..+..++.++.+..+|.++++.+-... ......+.. ++.
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~--~~~ 278 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIV--DGN 278 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEE--ETT
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceE--ECC
Confidence 1 0111 24567777888999999999887665443 223333333 466
Q ss_pred EEEEecCCCcEEEEEcCCCCEEEEEe-cC-CCcceeEECCCCCeEEEEEcCCCCCCCC
Q 022716 226 YIASASEDLFIDISNVHTGRTVHQIP-CR-AAMNSVEWNPKYNLLAYAGDDKNKYQAD 281 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~~~~~~~~~~-~~-~~i~~~~~sp~~~~la~~~~d~~~~~~~ 281 (293)
.+..++.++.+..+|..+++.+.... .. ..+..... .+..|..++.++.++..+
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEE
Confidence 78888889999999999999876654 21 12222222 245666666666555544
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.66 E-value=4.7e-05 Score=62.91 Aligned_cols=205 Identities=11% Similarity=0.041 Sum_probs=118.6
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeC------------------CcCCeeEEEEcCCCCCEE
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG------------------HADSVDQLCWDPKHADLI 82 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~------------------h~~~i~~~~~~~~~~~~l 82 (293)
....+++|+++|+.+.++..++.|..|+.... ......... .......+++.++++.++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNS---GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTT---CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCC---ceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 34668899999988888888999999986532 122111100 012467788876334454
Q ss_pred EEEeCCCeEEEEeCCCCeeeeeee-ec----CceEEEEEcC-CCCEEEEEeC-----------------CCeEEEEEccc
Q 022716 83 ATASGDKTVRLWDARSGKCSQQAE-LS----GENINITYKP-DGTHIAVGNR-----------------DDELTILDVRK 139 (293)
Q Consensus 83 ~s~~~d~~i~vwd~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~l~~~~~-----------------d~~i~l~d~~~ 139 (293)
+ +.....+..+|..++....... .. ..+..+++.+ +|+..++... ++.+..+|..+
T Consensus 96 v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 96 I-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp E-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred E-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 4 5444558888876553221111 11 2345688888 8876665432 24555555543
Q ss_pred cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEE-EecCCCcEEEEeCCCC--EEEEEeeccCCCee
Q 022716 140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEM--LCVRTFTKLEWPVR 216 (293)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~gs~d~~i~iwd~~~~--~~~~~~~~~~~~v~ 216 (293)
..... +...-.....++++|+++.|. +-+..+.|..|++... .....+..... ..
T Consensus 175 ~~~~~---------------------~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~ 232 (322)
T 2fp8_A 175 KETTL---------------------LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG 232 (322)
T ss_dssp TEEEE---------------------EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE
T ss_pred CEEEE---------------------eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC
Confidence 22110 000001123578899998554 4466789999998641 01122222223 78
Q ss_pred EEEEccCCCEEEEecC----------CCcEEEEEcCCCCEEEEEec
Q 022716 217 TISFSHTGDYIASASE----------DLFIDISNVHTGRTVHQIPC 252 (293)
Q Consensus 217 ~l~~sp~~~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~ 252 (293)
.+++.++|++.++... .+.|..+|. .++.+..+..
T Consensus 233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~ 277 (322)
T 2fp8_A 233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPL 277 (322)
T ss_dssp EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEEC
T ss_pred CeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEEC
Confidence 8999999987766544 466788886 4776666643
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.52 E-value=0.00012 Score=60.43 Aligned_cols=196 Identities=10% Similarity=-0.018 Sum_probs=114.5
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE--eeC-CcCCeeEEEEcC-CCCCEEEEEeC----------
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE--LRG-HADSVDQLCWDP-KHADLIATASG---------- 87 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~--~~~-h~~~i~~~~~~~-~~~~~l~s~~~---------- 87 (293)
.+..+++++++..|..+...+.+..+|.+.. ....+. ..+ .......+++.+ ++ .++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGG---HATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCE---ECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCC---EEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccce
Confidence 5788999983334555555555777775421 111111 111 113467788888 64 56665432
Q ss_pred -------CCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeeeEEec
Q 022716 88 -------DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM 159 (293)
Q Consensus 88 -------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~ 159 (293)
++.|..+|..+++.......-..+..++++|+++.|.++ +..++|..+++....... ..
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-------~~------ 223 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-------AE------ 223 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-------EE------
T ss_pred ehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-------cc------
Confidence 367888888776643332222445679999999866655 456899999986422100 00
Q ss_pred CCCEEEEecCCCCEEEEEECCCCCEEEEecC----------CCcEEEEeCCCCEEEEEeeccC----CCeeEEEEccCCC
Q 022716 160 TGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA----------DSLVSLWDISEMLCVRTFTKLE----WPVRTISFSHTGD 225 (293)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~----------d~~i~iwd~~~~~~~~~~~~~~----~~v~~l~~sp~~~ 225 (293)
.+. .... ...++++++|+++++... .+.|..+|.. ++.+..+.... ..+..+++ .+++
T Consensus 224 ----~~~-~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~ 295 (322)
T 2fp8_A 224 ----VLV-KIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGL 295 (322)
T ss_dssp ----EEE-ECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTE
T ss_pred ----eEE-eCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCE
Confidence 000 0111 456788899887666544 4668888864 55555554332 34666666 4666
Q ss_pred EEEEecCCCcEEEEEcC
Q 022716 226 YIASASEDLFIDISNVH 242 (293)
Q Consensus 226 ~l~s~s~d~~i~iw~~~ 242 (293)
+.++....+.|..++..
T Consensus 296 L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEECSSCSEEEEEEC-
T ss_pred EEEeecCCCceEEEecc
Confidence 66666677778887764
No 250
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.52 E-value=2.2e-05 Score=70.34 Aligned_cols=243 Identities=12% Similarity=0.042 Sum_probs=138.7
Q ss_pred CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcC--CeeE-EEEcCCCCCEEEEEeC------CCeEEEEeCCCCeee
Q 022716 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQ-LCWDPKHADLIATASG------DKTVRLWDARSGKCS 102 (293)
Q Consensus 32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~--~i~~-~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~~~ 102 (293)
+..++.++.|+.+..+|..+.. ......+..+.. .+.+ ... .+ ..++.++. ++.|..+|.++++.+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v--~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGK--INWEVEVCDPKVGSTLTQAPFV--AK-DTVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCC--EEEEEECCCGGGTCBCCSCCEE--ET-TEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCEEEEEECCCCC--EEEEecCCCCCccceeccCCEE--EC-CEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 4567778889999999886432 233333332211 1111 011 12 34444544 789999999999877
Q ss_pred eeeeecCce---------------------------------------EEEEEcCCCCEEEEEeCC--------------
Q 022716 103 QQAELSGEN---------------------------------------INITYKPDGTHIAVGNRD-------------- 129 (293)
Q Consensus 103 ~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~d-------------- 129 (293)
-.+...... ..+++.++...+..++.+
T Consensus 190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence 655432211 124566666666666532
Q ss_pred --CeEEEEEccccceeeeeccc-ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC---EEEEecCCCcEEEEeCCCCE
Q 022716 130 --DELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR---YFAVGSADSLVSLWDISEML 203 (293)
Q Consensus 130 --~~i~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~gs~d~~i~iwd~~~~~ 203 (293)
+.+..+|.++.+.+-..... .+. |+.. ....++ .+...++|+ .++.++.+|.+.++|.++++
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~----~d~~-------~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDE----WDFA-------GVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCS----SCCC-------CCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcc----cccc-------cCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 25777887776543322211 000 0000 001111 122224663 57788899999999999988
Q ss_pred EEEEeeccC-------------CCe--------------------------eEEEEccCCCEEEEec-------------
Q 022716 204 CVRTFTKLE-------------WPV--------------------------RTISFSHTGDYIASAS------------- 231 (293)
Q Consensus 204 ~~~~~~~~~-------------~~v--------------------------~~l~~sp~~~~l~s~s------------- 231 (293)
.+-...-.. .++ ..++|+|+...++..+
T Consensus 338 ~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~ 417 (571)
T 2ad6_A 338 LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP 417 (571)
T ss_dssp EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC
T ss_pred EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc
Confidence 765543211 111 2467888877765543
Q ss_pred ------------------------CCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceE-E
Q 022716 232 ------------------------EDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVF-R 286 (293)
Q Consensus 232 ------------------------~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~-~ 286 (293)
.++.+..+|..+++.+-++....++........+..+.+++.|+.++.+|-.+. .
T Consensus 418 ~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 418 YRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 357899999999998877766555555444445667777888877776664333 3
Q ss_pred EEeee
Q 022716 287 IYGFE 291 (293)
Q Consensus 287 ~~~~~ 291 (293)
+|.++
T Consensus 498 lw~~~ 502 (571)
T 2ad6_A 498 LWNFK 502 (571)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 45543
No 251
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.51 E-value=0.00027 Score=57.87 Aligned_cols=232 Identities=12% Similarity=0.065 Sum_probs=132.1
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-C-eEEEEeCCC
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-K-TVRLWDARS 98 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-~-~i~vwd~~~ 98 (293)
.....++|+++|+.+++-..++.|..||.+.. ....... ......+++.+++ .++++.... + .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~~---~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATV---EGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEEC---SSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEeC---CCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCC
Confidence 56789999999987777767899988886531 1111122 2357788888875 466554432 2 466677777
Q ss_pred CeeeeeeeecC--ceEEEEEcCCCCEEEEEeCCCeEEEEEccccce-eeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 99 GKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 99 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
++......... ....++..+++..+++...++.+..+|...... +.... +. ... -.+.+ .-.....
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~-~~-~~~--~~~~~-------~~~~png 173 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH-PM-LAR--SNSES-------VFPAANG 173 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC-GG-GSC--SSTTC-------CSCSEEE
T ss_pred CeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC-Cc-ccc--ccccC-------CCCcCCC
Confidence 76543332211 123344455554455444578888888754211 10000 00 000 00000 0011222
Q ss_pred EEECCCCCE-EEEecCCCcEEEEeCCC-CEE--EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEE--E
Q 022716 176 IAIDPMGRY-FAVGSADSLVSLWDISE-MLC--VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVH--Q 249 (293)
Q Consensus 176 ~~~~~~~~~-l~~gs~d~~i~iwd~~~-~~~--~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~--~ 249 (293)
+ +|+++. +++-+..+.|..|++.. +.. ...+... .....+++.++|++.++....+.|.+++.. ++... .
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~ 249 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ 249 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEee
Confidence 3 567754 45556678899999864 211 1122111 346779999999988887778889999975 65432 2
Q ss_pred EecC-CCcceeEEC---CCCCeEEEEEcC
Q 022716 250 IPCR-AAMNSVEWN---PKYNLLAYAGDD 274 (293)
Q Consensus 250 ~~~~-~~i~~~~~s---p~~~~la~~~~d 274 (293)
+... ...++++|. |+++.|..++..
T Consensus 250 ~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 250 AEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cccccCCceEEEEecccCCCCEEEEECCC
Confidence 3322 347889998 887766665543
No 252
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.50 E-value=0.00022 Score=56.70 Aligned_cols=198 Identities=12% Similarity=0.205 Sum_probs=121.3
Q ss_pred EeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeec--CceEEEEEcCCCCEEEEEeCCCeEEEEEcc
Q 022716 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVR 138 (293)
Q Consensus 61 ~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~ 138 (293)
.+++-...+..++++|++..+++....++.|...|.. ++....+... ...-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3556666799999999765566667778889999987 7776666544 356678888888777776677888888876
Q ss_pred ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC---C---CEEEEE--ee-
Q 022716 139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS---E---MLCVRT--FT- 209 (293)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~---~---~~~~~~--~~- 209 (293)
....... +..+.+.. + ....+...-.++++|.+..|.++.......+|.++ . ...+.. +.
T Consensus 100 ~~~~i~~------~~~~~~~~-~----~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~ 168 (255)
T 3qqz_A 100 PNSEVKI------LKKIKIPL-Q----ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQR 168 (255)
T ss_dssp TTCCEEE------EEEEECCC-S----SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHH
T ss_pred CCCeeee------eeeecccc-c----cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcc
Confidence 5432110 00000000 0 00123334567888887666555554444454442 1 111110 00
Q ss_pred -ccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEEEEEecCCC----------cceeEECCCCCeEEEE
Q 022716 210 -KLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTVHQIPCRAA----------MNSVEWNPKYNLLAYA 271 (293)
Q Consensus 210 -~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~----------i~~~~~sp~~~~la~~ 271 (293)
.....+.+++|.|... +++.......+.+.|.. |+.+..+..... -..|+|.|+|++++++
T Consensus 169 ~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 169 QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 1234678999999754 55666677888899964 666666655432 2458999999876663
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.50 E-value=2.2e-05 Score=71.74 Aligned_cols=236 Identities=12% Similarity=0.104 Sum_probs=139.4
Q ss_pred CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCc--CCeeE-EEEcCCCCCEEEEEeC------CCeEEEEeCCCCeee
Q 022716 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA--DSVDQ-LCWDPKHADLIATASG------DKTVRLWDARSGKCS 102 (293)
Q Consensus 32 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~--~~i~~-~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~~~ 102 (293)
+..++.++.|+.|..+|..+.. ........... ..+.. ... .+ ..++.+.. ++.|..+|..+++.+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~--~~W~~~~~~~~~~~~~~~~P~v--~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGK--AIWSQQTTDPAKPYSITGAPRV--VK-GKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCC--EEEEEECSCTTSSCBCCSCCEE--ET-TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECCCCC--EeeeeccCCCCCcceecCCCEE--EC-CEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 4567888889999999986532 22333221110 01110 011 12 24444432 589999999999877
Q ss_pred eeeeec-Cc-------------------------------eEEEEEcCCCCEEEEEeCCCe-------------------
Q 022716 103 QQAELS-GE-------------------------------NINITYKPDGTHIAVGNRDDE------------------- 131 (293)
Q Consensus 103 ~~~~~~-~~-------------------------------~~~~~~~~~~~~l~~~~~d~~------------------- 131 (293)
-.+... .. -..+++.|++..++.++.++.
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 655421 00 013678888888888876653
Q ss_pred EEEEEccccceeeeeccc-ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC---EEEEecCCCcEEEEeCCCCEEEEE
Q 022716 132 LTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVRT 207 (293)
Q Consensus 132 i~l~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~gs~d~~i~iwd~~~~~~~~~ 207 (293)
|..+|+++.+..-..... ... |+.. ...+.....+..+++ .++.++.+|.++++|.++++.+..
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~----wd~~--------~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDS----WDFT--------ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCC----SCCC--------CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred EEEEcCCCCceeeEeecCCCcc----cccc--------CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence 777787776644332211 000 1100 001122222223554 688999999999999999987743
Q ss_pred eeccC------------CC------------------------eeEEEEccCCCEEEEe---------------------
Q 022716 208 FTKLE------------WP------------------------VRTISFSHTGDYIASA--------------------- 230 (293)
Q Consensus 208 ~~~~~------------~~------------------------v~~l~~sp~~~~l~s~--------------------- 230 (293)
..... .+ ...++|+|+...++..
T Consensus 340 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~ 419 (668)
T 1kv9_A 340 EKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAF 419 (668)
T ss_dssp EESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSC
T ss_pred ccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccccccc
Confidence 32111 00 0126778876665431
Q ss_pred ---------------cCCCcEEEEEcCCCCEEEEEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcce
Q 022716 231 ---------------SEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGV 284 (293)
Q Consensus 231 ---------------s~d~~i~iw~~~~~~~~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~ 284 (293)
..++.|.-||..+++.+-+.+...+.....+...+.++++++.|+.++.++..+
T Consensus 420 ~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 420 NTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp CCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence 134789999999999887777666666666777788888888877666655433
No 254
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.43 E-value=0.00016 Score=67.00 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=70.0
Q ss_pred cEEEEEEC-CCCCeEEEEeC-CC----cEEEeecCCC-CCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC----Ce
Q 022716 22 KVHSVAWN-CTGTKLASGSV-DQ----TARVWHIEPH-GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KT 90 (293)
Q Consensus 22 ~v~~l~~s-~~~~~l~s~~~-dg----~v~iw~~~~~-~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d----~~ 90 (293)
.+...+|| |||++||.+.. +| +|+++|++.. .. ... .+. .....+.|+|++..++++...+ ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~--~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IAD--KVS---GTNGEIVWGPDHTSLFYVTKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCC--CEE---EECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCc--ccc---CceeeEEEecCCCEEEEEEECCCCCCCE
Confidence 68889999 99999885443 23 5999998754 21 000 111 1134678999875555554322 35
Q ss_pred EEEEeCCCCeee--eeeee--cCceEEEEEcCCCCEEEEEeC---CCeEEEEEcccc
Q 022716 91 VRLWDARSGKCS--QQAEL--SGENINITYKPDGTHIAVGNR---DDELTILDVRKF 140 (293)
Q Consensus 91 i~vwd~~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~~~---d~~i~l~d~~~~ 140 (293)
|.++++.++... ..++. ......+.|+|||++|+.... ...+.++|+.+.
T Consensus 249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 778888766422 22221 223457889999999887663 346777887653
No 255
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.41 E-value=8.8e-06 Score=67.16 Aligned_cols=226 Identities=12% Similarity=0.016 Sum_probs=125.1
Q ss_pred EEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee
Q 022716 25 SVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ 104 (293)
Q Consensus 25 ~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 104 (293)
+.....+| .+..++.++.|..|| .... ... ....+...+.++...++ ..++.++.+ +..+|. +++....
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~--~~~--~~~~~~~~~~~~~~~~~--g~l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGS--VKW--FFKSGEIIECRPSIGKD--GTIYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSC--EEE--SSCGGGEEEECCEETTT--TEECCSSCE--EEEECC-CGGGGGG
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCc--EEE--EEecCCCcccceEEecC--CcEEEecCc--EEEECC-CCcEEEE
Confidence 34444555 566777888899998 4321 111 11122233455555443 345545545 888885 5543332
Q ss_pred eeecCceE-EEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCC
Q 022716 105 AELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGR 183 (293)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (293)
........ ...+. +..+.+++.++.+..+|.+ .+.......+ ...+.++...+++.
T Consensus 93 ~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~--------------------~~~~~~~~~~~~g~ 149 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTK--------------------KAIYATPIVSEDGT 149 (330)
T ss_dssp SCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECS--------------------SCCCSCCEECTTSC
T ss_pred EECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCC--------------------CceeeeeEEcCCCE
Confidence 22222111 12222 4567888888999999876 3332221111 11122344555666
Q ss_pred EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-CCCcceeEEC
Q 022716 184 YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-RAAMNSVEWN 262 (293)
Q Consensus 184 ~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-~~~i~~~~~s 262 (293)
+..++.++.|..+|.. ++.+..+......+.++.+.+++...+.. +.+..+| .+++.+..... ...+.++...
T Consensus 150 -l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~ 223 (330)
T 3hxj_A 150 -IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS 223 (330)
T ss_dssp -EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEEC
T ss_pred -EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEEC
Confidence 5557777889999988 66555555444566777777777755544 7788888 67776655543 3457788888
Q ss_pred CCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 263 PKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 263 p~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
+++.+.+ ++.++.++..+...-++|.+.
T Consensus 224 ~~g~l~v-~t~~~gl~~~~~~g~~~~~~~ 251 (330)
T 3hxj_A 224 EDGTIYV-TSLDGHLYAINPDGTEKWRFK 251 (330)
T ss_dssp TTSCEEE-EETTTEEEEECTTSCEEEEEE
T ss_pred CCCeEEE-EcCCCeEEEECCCCCEeEEee
Confidence 8775544 444555555444333445543
No 256
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.38 E-value=1.5e-05 Score=65.79 Aligned_cols=221 Identities=16% Similarity=0.077 Sum_probs=123.3
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK 100 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 100 (293)
..+.++...++|. |..++.+ +..+|... ..... .............. ...++.++.++.+..+|.. ++
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g---~~~~~--~~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~ 127 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINPDG---TEKWR--FDTKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GT 127 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECCCG---GGGGG--SCC-----CCEEEE---TTEEEEECTTSEEEEECTT-SC
T ss_pred CcccceEEecCCc-EEEecCc--EEEECCCC---cEEEE--EECCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CC
Confidence 4456777776665 4445444 77776421 11111 11111111222222 2456678889999999988 66
Q ss_pred eeeeeeecCc-eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEEC
Q 022716 101 CSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAID 179 (293)
Q Consensus 101 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 179 (293)
.......... ..++...+++. +..++.++.+..+|.. .+.......+ ...+.++..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~--------------------~~~~~~~~~d 185 (330)
T 3hxj_A 128 EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN--------------------DAITSAASIG 185 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS--------------------SCCCSCCEEC
T ss_pred EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC--------------------CCceeeeEEc
Confidence 5544443333 23445556665 6667788999999977 4432221111 1122344556
Q ss_pred CCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC-cce
Q 022716 180 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA-MNS 258 (293)
Q Consensus 180 ~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~-i~~ 258 (293)
+++..++.. +.|..+| .+++.+.........+.++...++|.. ..++.++.+..++. +++.+..+..... +..
T Consensus 186 ~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~ 259 (330)
T 3hxj_A 186 KDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTGKRIESS 259 (330)
T ss_dssp TTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECSSCCCSC
T ss_pred CCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCCCCcccc
Confidence 677755544 7899999 666655555544456788888888754 44556777777774 5666665554333 445
Q ss_pred eEECCCCCeEEEEEcCCCCCCCCc
Q 022716 259 VEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 259 ~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
+...+++. |..++.++.++..+.
T Consensus 260 ~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 260 PVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp CEECTTSC-EEEECTTCEEEEECT
T ss_pred ceEcCCCe-EEEecCCCCEEEECC
Confidence 66665554 444555555555443
No 257
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.37 E-value=0.00021 Score=65.29 Aligned_cols=199 Identities=13% Similarity=0.171 Sum_probs=118.8
Q ss_pred EEEcCCCCCEEEEEeCCC-------------------eEEEEeCCCCeeeeeeeec----------CceEEEEEcCCCC-
Q 022716 72 LCWDPKHADLIATASGDK-------------------TVRLWDARSGKCSQQAELS----------GENINITYKPDGT- 121 (293)
Q Consensus 72 ~~~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~- 121 (293)
+++.|+. .+++.++.++ .|..+|.++++.+-.++.. .+..-..+..+|+
T Consensus 235 ~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 235 MAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp EEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred eEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 5666653 5677777665 3889999999887666542 2222233344665
Q ss_pred --EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEec-------------CCCEEEEecCC---CCEEEEEECCCCC
Q 022716 122 --HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM-------------TGEMFFLTTGN---AGCYCIAIDPMGR 183 (293)
Q Consensus 122 --~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~-------------~~~~~~~~~~~---~~~~~~~~~~~~~ 183 (293)
.++.++.+|.+.++|.++.+.+....+.........++ .+......... ..-..++++|+..
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 68888999999999999888764433321000000000 00000000000 0001134444433
Q ss_pred EEEE------------------------------------ecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE
Q 022716 184 YFAV------------------------------------GSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI 227 (293)
Q Consensus 184 ~l~~------------------------------------gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 227 (293)
.+.+ ...+|.|..||+.+++.+-+.... .+.....+...+.++
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v 472 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLV 472 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEE
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEE
Confidence 3222 224588999999999876555433 344444455678899
Q ss_pred EEecCCCcEEEEEcCCCCEEEEEecCCCcc--eeEECCCCC-eEEEEE
Q 022716 228 ASASEDLFIDISNVHTGRTVHQIPCRAAMN--SVEWNPKYN-LLAYAG 272 (293)
Q Consensus 228 ~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~--~~~~sp~~~-~la~~~ 272 (293)
+.++.|+.++.+|..+|+.+..+.....+. -+.+..+|. +++.++
T Consensus 473 f~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 473 FQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 999999999999999999998877655443 456656675 555554
No 258
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.33 E-value=0.00029 Score=63.34 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=60.7
Q ss_pred CCeEEEEeC-CCcEEEeec-CCCCCCceeEEEeeCCcC---------CeeEEEEcCCCC---CEEEEEeCCCeEEEEeCC
Q 022716 32 GTKLASGSV-DQTARVWHI-EPHGHGKVKDIELRGHAD---------SVDQLCWDPKHA---DLIATASGDKTVRLWDAR 97 (293)
Q Consensus 32 ~~~l~s~~~-dg~v~iw~~-~~~~~~~~~~~~~~~h~~---------~i~~~~~~~~~~---~~l~s~~~d~~i~vwd~~ 97 (293)
+..+..++. ++.|..+|. .+. ............. ....+.+.|.+. ..++.++.|+.+.-+|.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG--~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPG--TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCC--cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 445666666 788888887 542 1222222211100 011233422222 226778889999999999
Q ss_pred CCeeeeeeeecC-----ceEE-EEEcCCCCEEEEEe------CCCeEEEEEccccceeee
Q 022716 98 SGKCSQQAELSG-----ENIN-ITYKPDGTHIAVGN------RDDELTILDVRKFKPIHR 145 (293)
Q Consensus 98 ~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~------~d~~i~l~d~~~~~~~~~ 145 (293)
+++.+-...... ...+ ... .++ .+++++ .++.|..+|.++.+.+-+
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~ 197 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence 998766554332 1111 111 133 455555 378999999987765433
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.29 E-value=0.00016 Score=67.09 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=88.4
Q ss_pred CeeEEEEc-CCCCCEEEEEeCCC----eEEEEeCCCC-eeeeeeeecCceEEEEEcCCCCEEEEEeCCC-----eEEEEE
Q 022716 68 SVDQLCWD-PKHADLIATASGDK----TVRLWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDD-----ELTILD 136 (293)
Q Consensus 68 ~i~~~~~~-~~~~~~l~s~~~d~----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~l~d 136 (293)
.+....|+ |++..+.++...+| .|+++|+.++ +.+.. ........++|+|||+.|+....+. .|..++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 46778999 98655555555443 4999999988 53211 1111233578999999888877652 456666
Q ss_pred ccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC---CCcEEEEeCCCC--EE-EEEee-
Q 022716 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEM--LC-VRTFT- 209 (293)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~---d~~i~iwd~~~~--~~-~~~~~- 209 (293)
+.+...... + ++-.........+.++|++++|+..+. ...|.++|+.++ .. +..+.
T Consensus 254 lgt~~~~~~---------l--------v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 254 MGKLQSEDV---------C--------LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp TTSCGGGCE---------E--------EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred CCCCchhcE---------E--------EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence 554321100 0 010111122346788999998776552 346888888764 22 12332
Q ss_pred ccCCCeeEEEEccCCCEEEEecCC----CcEEEEEcCC
Q 022716 210 KLEWPVRTISFSHTGDYIASASED----LFIDISNVHT 243 (293)
Q Consensus 210 ~~~~~v~~l~~sp~~~~l~s~s~d----~~i~iw~~~~ 243 (293)
.......++.|+..+.+++....+ ..|..++..+
T Consensus 317 ~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 233444555554444444444333 3567777764
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.0016 Score=56.18 Aligned_cols=154 Identities=11% Similarity=0.121 Sum_probs=89.0
Q ss_pred cEEEEEECC-CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC----eEEEEeC
Q 022716 22 KVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK----TVRLWDA 96 (293)
Q Consensus 22 ~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~----~i~vwd~ 96 (293)
....++++| ++..|..+...+.|+.+|++.. ... .+.........+++++++..++++-..++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~---~v~--~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE---YVS--TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT---EEE--EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC---EEE--EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 457889998 4556666655578888887642 222 12223345678899887543555544222 2333332
Q ss_pred CCCeee--eeeeecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 97 RSGKCS--QQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 97 ~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
.+... ..+.....+..+++.| +|..+++-...++|..+|+......... ........
T Consensus 213 -~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~-------------------~~~~~~~P 272 (430)
T 3tc9_A 213 -ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF-------------------TIQDSGWE 272 (430)
T ss_dssp -GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE-------------------ECSSSSCC
T ss_pred -CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-------------------EcCCCCcc
Confidence 23221 2222234566788999 6666666667788999987654321110 01111234
Q ss_pred EEEEECCCCC-EEEEecCCCcEEEEeCC
Q 022716 174 YCIAIDPMGR-YFAVGSADSLVSLWDIS 200 (293)
Q Consensus 174 ~~~~~~~~~~-~l~~gs~d~~i~iwd~~ 200 (293)
..++++|+++ .+++-...+.|..++..
T Consensus 273 ~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 273 FHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 5788899998 45555667788887764
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.25 E-value=0.00062 Score=60.94 Aligned_cols=182 Identities=13% Similarity=0.055 Sum_probs=105.0
Q ss_pred eEEEEeCCCCeeeeeeeecC----------ceEEEEEcCCCC---EEEEEeCCCeEEEEEccccceeeeecccceee-ee
Q 022716 90 TVRLWDARSGKCSQQAELSG----------ENINITYKPDGT---HIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-EI 155 (293)
Q Consensus 90 ~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~-~v 155 (293)
.|..+|.++++.+-.++... .+.-+...++|+ .++.++.+|.+.++|.++.+.+....+...+. .-
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 58899999998776655321 122223335774 56778889999999998887765544332110 00
Q ss_pred EEe-cCCCE--------------EEEecC---CCCEEEEEECCCCCEEEEe-----------------------------
Q 022716 156 AWN-MTGEM--------------FFLTTG---NAGCYCIAIDPMGRYFAVG----------------------------- 188 (293)
Q Consensus 156 ~~~-~~~~~--------------~~~~~~---~~~~~~~~~~~~~~~l~~g----------------------------- 188 (293)
..+ ..+.. ...... ...-..++++|+...+.+.
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 000 00000 000000 0000123444444433332
Q ss_pred --------cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCcc--e
Q 022716 189 --------SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMN--S 258 (293)
Q Consensus 189 --------s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i~--~ 258 (293)
..++.|..||+.+++.+-++.. ..++.+..+...+..++.++.|+.++.+|.++|+.+..+.....+. .
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p 511 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP 511 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeee
Confidence 2457899999999877655532 2233333334456677789999999999999999998887655443 3
Q ss_pred eEECCCCCeEEEEE
Q 022716 259 VEWNPKYNLLAYAG 272 (293)
Q Consensus 259 ~~~sp~~~~la~~~ 272 (293)
+.+..++.+++...
T Consensus 512 ~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 512 MTYSFKGKQYIGSM 525 (571)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEEEEEE
Confidence 55667886555443
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.18 E-value=0.002 Score=53.79 Aligned_cols=198 Identities=7% Similarity=-0.028 Sum_probs=114.4
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
...-+|.+..++ .+|+.+. .+.|+..+++.. . ...... .......++|.+....++++-...+.|..+++...
T Consensus 33 ~d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~---~-~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 33 PDRRSCKALGPE-PVLLFAN-RIDIRQVLPHRS---E-YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp TTSSCEEESSSC-CEEEEEC-BSCEEEECTTSC---C-EEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCcccccccC-ceeEeec-ccceEEEeCCCC---e-eEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 344567766664 3444443 345776666532 1 111122 23446788998876667777667889999998765
Q ss_pred eeeeeeee-cCceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEE
Q 022716 100 KCSQQAEL-SGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIA 177 (293)
Q Consensus 100 ~~~~~~~~-~~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 177 (293)
........ -..+..+++.+.+..| ++-...+.|.+.++....... ++...-.....++
T Consensus 106 ~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--------------------l~~~~l~~P~~ia 165 (349)
T 3v64_C 106 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--------------------LLWQSLEKPRAIA 165 (349)
T ss_dssp SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--------------------EECTTCSCEEEEE
T ss_pred CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--------------------EEeCCCCCcceEE
Confidence 43322221 2345678888755444 455556788888876432111 1111223456788
Q ss_pred ECCCCCE-EEEecCC-CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCC
Q 022716 178 IDPMGRY-FAVGSAD-SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTG 244 (293)
Q Consensus 178 ~~~~~~~-l~~gs~d-~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~ 244 (293)
++|.+.. +++-... +.|..+++............-...+.|+++|++..| ++-+..+.|..++....
T Consensus 166 vdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 8885544 4444444 778888876432221122223457899999876665 44456678999987643
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.16 E-value=0.0022 Score=53.58 Aligned_cols=205 Identities=12% Similarity=0.024 Sum_probs=120.0
Q ss_pred ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
..+..++|++.+..|. +-...+.|+.++++... ...+ ..........+++.+.++.++++-...+.|.+.+++..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~-~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEV-VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEE-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCC---ceEE-EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 3468899997666665 44457888888876432 1111 11122334567777666667777777889999998754
Q ss_pred eeeeeee-ecCceEEEEEcCCCCEEEEEe-CC-CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 100 KCSQQAE-LSGENINITYKPDGTHIAVGN-RD-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 100 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~d-~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
....... .-..+..+++.|.+..|.... .. +.|...++........ +...-.....+
T Consensus 149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------------------~~~~~~~PnGl 208 (349)
T 3v64_C 149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------------------ADTHLFWPNGL 208 (349)
T ss_dssp SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--------------------CCSSCSCEEEE
T ss_pred ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--------------------EECCCCCcceE
Confidence 3322222 124567899998665555444 34 6777777654321110 00112234567
Q ss_pred EECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716 177 AIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 177 ~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~ 250 (293)
+++|++. ++++-+..+.|..+|+........+.........+++ ..+....+-...+.|...+..+|+.+..+
T Consensus 209 a~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 8887554 4444455678888887643322222222345677887 45556666667788888886677655444
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.16 E-value=0.0025 Score=54.02 Aligned_cols=206 Identities=12% Similarity=0.028 Sum_probs=120.3
Q ss_pred ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
..+..++|++.+..|. +-...+.|+.++++... ...+ ..........+++.+.++.++++-...+.|.+.+++..
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~-~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEV-VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC---EEEE-ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC---cEEE-EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 4577899997666554 54557888888876421 1111 11112234566777665667777777788888887654
Q ss_pred eeeeeeee-cCceEEEEEcCCCCEEEEEeC-C-CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 100 KCSQQAEL-SGENINITYKPDGTHIAVGNR-D-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d-~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
........ -..+..+++.|.+..|..... . +.|..+++....... +....-.....|
T Consensus 192 ~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--------------------~~~~~~~~PnGl 251 (386)
T 3v65_B 192 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--------------------IADTHLFWPNGL 251 (386)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--------------------EECSSCSCEEEE
T ss_pred ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--------------------EEECCCCCeeeE
Confidence 33222221 245678899987665555443 3 567777765422111 111122234567
Q ss_pred EECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716 177 AIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 177 ~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 251 (293)
+++|++. ++++=+..+.|..+|+........+.........|++ ..+....+....+.|...+..+|+.+..+.
T Consensus 252 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 252 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 8886554 4455455678888887643322222222345677888 455666676777888888876776555443
No 265
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.13 E-value=0.0026 Score=53.28 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=58.8
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEE-Eee---CCcCCeeEEEEcCC---CCCEEEEEeCC----
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELR---GHADSVDQLCWDPK---HADLIATASGD---- 88 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~---~h~~~i~~~~~~~~---~~~~l~s~~~d---- 88 (293)
-.....++|.|+|+.++ +..+|.|++++ +. ....+ .+. .-......++++|+ +..++++-...
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~-~g----~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR-EG----RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE-TT----EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE-CC----CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 34677999999998555 45679999987 31 11111 111 11345678999986 44455554432
Q ss_pred -CeEEEEeCCCCee---eeeee-ec------CceEEEEEcCCCCEEEEEe
Q 022716 89 -KTVRLWDARSGKC---SQQAE-LS------GENINITYKPDGTHIAVGN 127 (293)
Q Consensus 89 -~~i~vwd~~~~~~---~~~~~-~~------~~~~~~~~~~~~~~l~~~~ 127 (293)
..|..++...+.. ...+. .. .....++|.|||...++.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 5677777764321 11111 11 1234689999997665543
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.10 E-value=0.0035 Score=56.20 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=70.3
Q ss_pred CCC---CEEEEecCCCcEEEEeCCCCEEEEEeeccC-------------CC-----------------------------
Q 022716 180 PMG---RYFAVGSADSLVSLWDISEMLCVRTFTKLE-------------WP----------------------------- 214 (293)
Q Consensus 180 ~~~---~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~-------------~~----------------------------- 214 (293)
.+| ..++.++.+|.++++|.++++.+-.+.... .+
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G 410 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG 410 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence 456 378889999999999999988775443221 00
Q ss_pred ---eeEEEEccCCCEEEEec---------------------------------CCCcEEEEEcCCCCEEEEEecCCCcce
Q 022716 215 ---VRTISFSHTGDYIASAS---------------------------------EDLFIDISNVHTGRTVHQIPCRAAMNS 258 (293)
Q Consensus 215 ---v~~l~~sp~~~~l~s~s---------------------------------~d~~i~iw~~~~~~~~~~~~~~~~i~~ 258 (293)
...++|+|+...++... .++.|.-||..+++.+-+.+...++..
T Consensus 411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~ 490 (582)
T 1flg_A 411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA 490 (582)
T ss_dssp SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc
Confidence 01346677655554432 368899999999998877665544443
Q ss_pred eEECCCCCeEEEEEcCCCCCCCCcceE-EEEee
Q 022716 259 VEWNPKYNLLAYAGDDKNKYQADEGVF-RIYGF 290 (293)
Q Consensus 259 ~~~sp~~~~la~~~~d~~~~~~~~~~~-~~~~~ 290 (293)
-.....+.++.+++.|+.++-+|..+. .+|.+
T Consensus 491 g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 491 GVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp CCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 333334667777887776666554333 34544
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.06 E-value=0.0039 Score=52.86 Aligned_cols=195 Identities=7% Similarity=-0.041 Sum_probs=110.6
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 102 (293)
-+|.+..++ .+|+.+. ...|+..+++... .. . +.........++|.+....++++-...+.|..+++......
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~---~~-~-~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSE---YT-L-LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCC---CE-E-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCc---EE-E-EecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 345555553 3444443 3567777775421 11 1 12223456788998776667777677889999998765433
Q ss_pred eeeee-cCceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC
Q 022716 103 QQAEL-SGENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP 180 (293)
Q Consensus 103 ~~~~~-~~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (293)
..... ...+..+++.+.+..| ++-...+.|.+.++...... .++...-.....++++|
T Consensus 152 ~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~--------------------~l~~~~l~~P~giavdp 211 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--------------------VLLWQSLEKPRAIALHP 211 (386)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE--------------------EEECSSCSCEEEEEEET
T ss_pred EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE--------------------EeecCCCCCCcEEEEEc
Confidence 22221 1244567888755444 44445667777766532211 11111223456788888
Q ss_pred CCCEEEEe-cCC-CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCCC
Q 022716 181 MGRYFAVG-SAD-SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHTG 244 (293)
Q Consensus 181 ~~~~l~~g-s~d-~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~~ 244 (293)
.+..|... ... +.|..+++............-...+.|+++|++..| ++-+..+.|..++....
T Consensus 212 ~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 212 MEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp TTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 66544443 334 678888876432222222223457899999876655 44456678888887643
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.04 E-value=0.0013 Score=59.03 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=106.8
Q ss_pred CeEEEEeCCCCeeeeeeeecC----------ceEEEEEc-CCCC---EEEEEeCCCeEEEEEccccceeeeecccceee-
Q 022716 89 KTVRLWDARSGKCSQQAELSG----------ENINITYK-PDGT---HIAVGNRDDELTILDVRKFKPIHRRKFGYEVN- 153 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~-~~~~---~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~- 153 (293)
+.|.-+|.++++.+-.++... .++-+... .+|+ .++.++.+|.+.++|.++.+.+....+...++
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 579999999998876665421 11112222 5674 67888999999999999888765544432110
Q ss_pred --eeE-----------Eec--------CCCEEEEec---CCCCEEEEEECCCCCEEEEe---------------------
Q 022716 154 --EIA-----------WNM--------TGEMFFLTT---GNAGCYCIAIDPMGRYFAVG--------------------- 188 (293)
Q Consensus 154 --~v~-----------~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~l~~g--------------------- 188 (293)
.+. +.+ ......... +...-..++++|+...+.+.
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 000 000 000000000 00000123444443332221
Q ss_pred ------------cCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCc
Q 022716 189 ------------SADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM 256 (293)
Q Consensus 189 ------------s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i 256 (293)
..+|.|..||+.+++.+=+.... .++..-.....+.+++.|+.|+.++.+|.++|+.+.++.....+
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~ 529 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI 529 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc
Confidence 23688999999998766444322 22222222235677888999999999999999999888766655
Q ss_pred ce--eEECCCCCe-EEEEE
Q 022716 257 NS--VEWNPKYNL-LAYAG 272 (293)
Q Consensus 257 ~~--~~~sp~~~~-la~~~ 272 (293)
.+ +.|..+|.+ +++.+
T Consensus 530 ~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 530 VSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp CSCCEEEEETTEEEEEEEE
T ss_pred ccCceEEEECCEEEEEEEc
Confidence 43 788788864 44443
No 269
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.03 E-value=0.0088 Score=55.69 Aligned_cols=240 Identities=10% Similarity=0.070 Sum_probs=139.0
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee
Q 022716 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 102 (293)
|.++...++|...+ |..++-+..|+..... ........+...|.++...++ +.++ .++.++-+.+||..+++..
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~---~~~~~~~~~~~~i~~i~~d~~-g~lw-igt~~~Gl~~~~~~~~~~~ 248 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKT---FEKVIPILGTKQIQAILQQSP-TRIW-VATEGAGLFLINPKTKEIK 248 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCC---EEECC----CCCEEEEEEEET-TEEE-EEEBSSCEEEEETTTTEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCe---EEEecCCCCCCeeEEEEEcCC-CCEE-EEECCCCeEEEeCCCCeEE
Confidence 88888887775444 6665557888865321 111101113456777776554 3344 4554545888998776543
Q ss_pred eeeee--------cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec--------ccceeeeeEEecCCCEEEE
Q 022716 103 QQAEL--------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVNEIAWNMTGEMFFL 166 (293)
Q Consensus 103 ~~~~~--------~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~ 166 (293)
..... ...+.++...++|. +..|+.+ -+.++|..+........ ....+.++..+..+.+.+.
T Consensus 249 ~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWig 326 (795)
T 4a2l_A 249 NYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLG 326 (795)
T ss_dssp EECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEE
T ss_pred EeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEE
Confidence 32111 23356677777776 4455555 57888876543221110 1123555555555444332
Q ss_pred ec--------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec--------cC
Q 022716 167 TT--------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK--------LE 212 (293)
Q Consensus 167 ~~--------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~--------~~ 212 (293)
+. ....+.++..++++++ ..|+.++-|..||..++....-... ..
T Consensus 327 t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (795)
T 4a2l_A 327 TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS 405 (795)
T ss_dssp ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence 21 1124778888887775 4577777899999876543221111 13
Q ss_pred CCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-----cCCCcceeEECCCCCeEEEE
Q 022716 213 WPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP-----CRAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 213 ~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~-----~~~~i~~~~~sp~~~~la~~ 271 (293)
..|.++...++|+.|-.|+.++-+.+++..+++..+... ....|.++...+++++.+.+
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 568899888888855566676668999988876433221 12357788888878765554
No 270
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.00 E-value=0.01 Score=55.34 Aligned_cols=239 Identities=12% Similarity=0.078 Sum_probs=144.2
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee-----CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-----GHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~-----~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
...|.++...++|. |..|+.++-|..|+..... ....... -....|.++...++ +.+. .|+.++-+..|
T Consensus 309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~l~~~~V~~i~~d~~-g~lW-iGt~~~Gl~~~ 382 (795)
T 4a2l_A 309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR---FKNIRNIPYKNSLSDNVVSCIVEDKD-KNLW-IGTNDGGLNLY 382 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS---SEEECCCTTSSSCSCSSEEEEEECTT-SCEE-EEESSSCEEEE
T ss_pred CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc---ceEEcCCCCCCCCCCCeeEEEEECCC-CCEE-EEECCCCeEEE
Confidence 35799999998886 5567777778888764321 1111100 02345888887654 3444 57777788999
Q ss_pred eCCCCeeeeeee--------e-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec-----ccceeeeeEEecC
Q 022716 95 DARSGKCSQQAE--------L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMT 160 (293)
Q Consensus 95 d~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~-----~~~~~~~v~~~~~ 160 (293)
|..++....... . ...+.++...++|+.|.+|+.++-+..+|.++.+...-.. ....+..+..+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 383 NPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGE 462 (795)
T ss_dssp CTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSS
T ss_pred cCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC
Confidence 987765433211 1 2345677777788757778887889999987644222111 1223444444444
Q ss_pred CCEEEEec-------------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee------
Q 022716 161 GEMFFLTT-------------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT------ 209 (293)
Q Consensus 161 ~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~------ 209 (293)
+.+++.+. ....+.++..++++++.+... +-|..||..+... .+.
T Consensus 463 g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~ 538 (795)
T 4a2l_A 463 GNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVS 538 (795)
T ss_dssp SCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSC
T ss_pred CCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCC
Confidence 43322111 113467888888888666544 5588898877654 222
Q ss_pred -ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-----CCCcceeEECCCCCeEEEE
Q 022716 210 -KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 210 -~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~la~~ 271 (293)
-....|.++...++|+..++.. . -+..+|..+++ ...+.. ...|.++...++|++.+++
T Consensus 539 ~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~-~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 539 NVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ-IKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp GGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE-EEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred CCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc-EEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 1234688999889998655443 3 47788876654 333321 2346778888888776666
No 271
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.94 E-value=0.0033 Score=56.51 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=104.1
Q ss_pred CeEEEEeCCCCeeeeeeeecCc----------eEEEEEc-CCC---CEEEEEeCCCeEEEEEccccceeeeeccccee--
Q 022716 89 KTVRLWDARSGKCSQQAELSGE----------NINITYK-PDG---THIAVGNRDDELTILDVRKFKPIHRRKFGYEV-- 152 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~----------~~~~~~~-~~~---~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~-- 152 (293)
..|.-+|.++++.+-.++...+ ++-+... .+| +.++.++.+|.+.++|.++.+++....+...+
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 357 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV 357 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence 3788999999988766654321 1222232 567 46777889999999999888776554322100
Q ss_pred --------------------------------------eeeEEecCCCEEEEecCCCCEEEEEECC----CCCE------
Q 022716 153 --------------------------------------NEIAWNMTGEMFFLTTGNAGCYCIAIDP----MGRY------ 184 (293)
Q Consensus 153 --------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------ 184 (293)
..++++|...++++...+. +......+ .+..
T Consensus 358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~-~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHI-CMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECE-EEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEecccc-ceeeecccccccCCcceecccc
Confidence 1123333333333322110 00000000 0110
Q ss_pred -EEE--ec------CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCC
Q 022716 185 -FAV--GS------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPCRAA 255 (293)
Q Consensus 185 -l~~--gs------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~ 255 (293)
+.. .+ .+|.|..||+.+++.+=+... ..+...-.....+..++.++.|+.++.+|.++|+.+.++.....
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 011 01 457899999999876644431 22222212234577788899999999999999999987765544
Q ss_pred c--ceeEECCCCCe-EEEEE
Q 022716 256 M--NSVEWNPKYNL-LAYAG 272 (293)
Q Consensus 256 i--~~~~~sp~~~~-la~~~ 272 (293)
+ .-+.|..+|.+ +++.+
T Consensus 516 ~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 516 AIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp CCSCCEEEEETTEEEEEEEE
T ss_pred cEeccEEEEeCCEEEEEEEc
Confidence 3 34677778864 44444
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.94 E-value=0.0054 Score=50.06 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=110.0
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeCCC--eEEEEEccccceeee
Q 022716 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHR 145 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~i~l~d~~~~~~~~~ 145 (293)
....++|.+++ .++++-..++.|..||.... ..........+..+++.++|+.+++..... .+..+|..+.+....
T Consensus 33 ~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 33 FLENLASAPDG-TIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CEEEEEECTTS-CEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcceEEECCCC-CEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 45678888864 57777667899999997653 334445556778899999999666554332 466666554432111
Q ss_pred ecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-EEEEee---------ccCCCe
Q 022716 146 RKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFT---------KLEWPV 215 (293)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-~~~~~~---------~~~~~v 215 (293)
... +. ......++..+.+..+++-..++.|..+|...+. .+.... ..-...
T Consensus 111 ~~~----------~~---------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 111 LTL----------PD---------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp EEC----------TT---------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred EeC----------CC---------ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 100 00 0011223334555555555568889999987642 121111 011234
Q ss_pred eEEEEccCCCEE-EEecCCCcEEEEEcCC-CCE--EEEEecCCCcceeEECCCCCeEEEEEcCCCCCCC
Q 022716 216 RTISFSHTGDYI-ASASEDLFIDISNVHT-GRT--VHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA 280 (293)
Q Consensus 216 ~~l~~sp~~~~l-~s~s~d~~i~iw~~~~-~~~--~~~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~ 280 (293)
+.+ +|++++| ++-...+.|..++... ++. ...+........+++.++|+++++......+...
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~ 238 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI 238 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEE
Confidence 556 8888766 5556678899999864 331 1222222346778999999876665544444443
No 273
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.93 E-value=0.0019 Score=52.97 Aligned_cols=174 Identities=11% Similarity=0.122 Sum_probs=103.5
Q ss_pred eeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecC---------ceEEEEE---cCCCCEEEEEe--
Q 022716 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITY---KPDGTHIAVGN-- 127 (293)
Q Consensus 62 ~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~l~~~~-- 127 (293)
+.+..-.--+..|++..+.++++.-..++|..||...+..... ...+ .+..+.+ .|+++.+++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3333333446688876666666666899999999875543322 2222 2457889 68877777544
Q ss_pred -----------CCCeEEEEEcc---ccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC-C
Q 022716 128 -----------RDDELTILDVR---KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD-S 192 (293)
Q Consensus 128 -----------~d~~i~l~d~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-~ 192 (293)
.+..+..+|+. +.+.+....+......++ ...+. ....+..++++++|+..++++.- +
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~-~~~g~------~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFE-KKAGK------RPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHH-HHHSS------CCEEEEEEEECTTSCEEEEEEESSC
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccc-ccccc------cccCCceeEECCCCCEEEeCCCCCC
Confidence 25778889988 554433222110000000 00000 01124567888888888888777 7
Q ss_pred cEEEEeCCCCEEEEEee------ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC
Q 022716 193 LVSLWDISEMLCVRTFT------KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG 244 (293)
Q Consensus 193 ~i~iwd~~~~~~~~~~~------~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~ 244 (293)
.|...+.... .+..+. ......+.|+++|+|..|+.....+.+..+|+.+.
T Consensus 160 ~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 160 AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 7776665433 122211 11223678999999988877766999999998754
No 274
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.92 E-value=0.0064 Score=50.22 Aligned_cols=222 Identities=11% Similarity=0.080 Sum_probs=115.4
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
...+.++.|.+++..++ ++.+|.|.. ..+....-.............+.++.+.+ ...+ .++.++.|.. ..+.+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~-~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGW-IVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEE-EEEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC--CeEE-EEECCCeEEE-ECCCC
Confidence 45799999988787777 455776532 22211110111000111234577888865 2344 4556665544 23333
Q ss_pred eeeeeee----ecCceEEEEEcCCCCEEEEEeCCCeEEE-EEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 100 KCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTI-LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 100 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~l-~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
+.-.... ..+....+.+.+++..++++ .++.+.. .| ........ .......+.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~-------------------~~~~~~~~~ 166 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQAL-------------------VQEAIGVMR 166 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEE-------------------ECSCCCCEE
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEe-------------------ecCCCcceE
Confidence 3211111 12345566666666555544 4454321 12 11111100 011123466
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeC--CCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe-
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP- 251 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~- 251 (293)
.+++.|++.+++++...+..+-.|- .+...+. ......+..+.+.|+++.++. +.++.+++++...++.-..+.
T Consensus 167 ~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp EEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBC
T ss_pred EEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccC
Confidence 7888898888877765444444453 4455442 234567889999999876644 457777776422233222221
Q ss_pred ----cCCCcceeEECCCCCeEEEEE
Q 022716 252 ----CRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 252 ----~~~~i~~~~~sp~~~~la~~~ 272 (293)
....+.++.+.|++.+++.+.
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEEES
T ss_pred CcccCCcceEEEEecCCCEEEEEeC
Confidence 123477889998887777664
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.91 E-value=0.0087 Score=51.57 Aligned_cols=199 Identities=10% Similarity=0.074 Sum_probs=110.5
Q ss_pred cEEEEEECCC--CCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC---Ce-EEEEe
Q 022716 22 KVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KT-VRLWD 95 (293)
Q Consensus 22 ~v~~l~~s~~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d---~~-i~vwd 95 (293)
....++|+|+ +..|..+...+.|+.++.... ... .+.........+++.+++. ++++.... .. +...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g---~v~--~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ---YVD--IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT---EEE--EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC---EEE--EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 4678999985 445555554488888887532 222 2223344578899998765 66554322 12 22223
Q ss_pred CCCCee-eeeeeecCceEEEEEcC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 96 ARSGKC-SQQAELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 96 ~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
...+.. .........+..+++.| +|..+++-..++.|..+|..+....... .........
T Consensus 214 ~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~------------------~~~~~~~~~ 275 (433)
T 4hw6_A 214 RASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE------------------VMMDTKGSN 275 (433)
T ss_dssp GGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE------------------EECSCCSSC
T ss_pred CCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE------------------eccCCCCCc
Confidence 221111 01112233455688888 6665556556778888887643321110 000011122
Q ss_pred EEEEECCCCC-EEEEecCCCcEEEEeCC--CCEE--EEEeecc---------------CCCeeEEEE---------ccCC
Q 022716 174 YCIAIDPMGR-YFAVGSADSLVSLWDIS--EMLC--VRTFTKL---------------EWPVRTISF---------SHTG 224 (293)
Q Consensus 174 ~~~~~~~~~~-~l~~gs~d~~i~iwd~~--~~~~--~~~~~~~---------------~~~v~~l~~---------sp~~ 224 (293)
..++++|+++ ++++-...+.|..+++. ++.. ...+.+. -.....+++ .++|
T Consensus 276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g 355 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY 355 (433)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC
Confidence 3588899998 45555667788887764 2210 1112111 123667888 6777
Q ss_pred CEEEEecCCCcEEEEEcCCCC
Q 022716 225 DYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 225 ~~l~s~s~d~~i~iw~~~~~~ 245 (293)
.+.++-.....|+.++. +|.
T Consensus 356 ~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 356 DFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEETTTTEEEEECT-TSE
T ss_pred cEEEEECCCCEEEEECC-CCC
Confidence 77777777788888874 553
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=0.0023 Score=55.11 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=93.3
Q ss_pred eeEEEEcC-CCCCEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CC----eEEEEEccccce
Q 022716 69 VDQLCWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD----ELTILDVRKFKP 142 (293)
Q Consensus 69 i~~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~----~i~l~d~~~~~~ 142 (293)
...++++| .+.. |+.+...+.|+.+|+..+...........+..++++++|+.|++... .+ .+..++... ..
T Consensus 139 P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~ 216 (430)
T 3tc9_A 139 AVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GF 216 (430)
T ss_dssp CCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TS
T ss_pred CCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ce
Confidence 45778887 3333 44444447888999887665444444456788999999996666554 22 233333221 11
Q ss_pred eeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCCEEEEecCCCcEEEEeCCCCEEEEEeec-cCCCeeEEEE
Q 022716 143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTK-LEWPVRTISF 220 (293)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~ 220 (293)
... .. +. .-.....++++| ++.++++-..++.|..++............ .......++|
T Consensus 217 ~~~-------~~-----------l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 217 KVI-------TE-----------LT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp CSE-------EE-----------EE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred eee-------ee-----------ec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence 100 00 00 012234678899 777777777788999999987654222221 2235788999
Q ss_pred ccCCCEE-EEecCCCcEEEEEcC
Q 022716 221 SHTGDYI-ASASEDLFIDISNVH 242 (293)
Q Consensus 221 sp~~~~l-~s~s~d~~i~iw~~~ 242 (293)
+|+|++| ++-.....|..++..
T Consensus 278 ~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 278 HPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEeCC
Confidence 9999955 555567788887754
No 277
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.83 E-value=0.02 Score=53.22 Aligned_cols=210 Identities=13% Similarity=0.002 Sum_probs=117.7
Q ss_pred cccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 20 KKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
...+..++|++.+..| ++-...+.|+.++++...........+.........+++.+.+..++++-...+.|.+.+++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 3567889999865555 455556788888876321100111122223344567777766666777777789999999875
Q ss_pred Ceeeeeee-ecCceEEEEEcCCCCEEEEEeC-C-CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 99 GKCSQQAE-LSGENINITYKPDGTHIAVGNR-D-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-d-~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
........ .-..+..+++.|.+..|+.... . +.|...++....... ++...-.....
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--------------------lv~~~l~~P~G 562 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--------------------LVTENIQWPNG 562 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--------------------EECSSCSCEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--------------------EEeCCCCCceE
Confidence 54333222 2235778999987655555442 2 567777765432211 11112234567
Q ss_pred EEECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeecc--CCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716 176 IAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTKL--EWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 176 ~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~ 250 (293)
|++++.+..| ++=...+.|..+++........+... -....+|++.. +.+.++-...+.|...+..+|+.+..+
T Consensus 563 LavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 8888665544 44445667888888644332222221 12345666632 344455566677888887777554443
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.83 E-value=0.0091 Score=49.15 Aligned_cols=206 Identities=8% Similarity=-0.033 Sum_probs=118.9
Q ss_pred ccEEEEEECCCCCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 21 KKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
..+..++|++.+..| ++-...+.|..++++...... .. ..........+++.+.++.++++-...+.|.+.+++..
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--~~-~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NV-VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--EE-EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--EE-EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 356788999865555 555567888888876432111 11 11112334567777655667777677889999998654
Q ss_pred eeeeee-eecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 100 KCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
...... ..-..+..+++.|.+..|..... .+.|...++....... ++...-.....+
T Consensus 112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--------------------~~~~~l~~Pngl 171 (318)
T 3sov_A 112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--------------------IINSEIYWPNGL 171 (318)
T ss_dssp SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--------------------EECSSCSCEEEE
T ss_pred cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--------------------EEECCCCCccEE
Confidence 322222 22345678899887655555542 4677777765322111 111112234567
Q ss_pred EECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716 177 AIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 177 ~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~ 250 (293)
+++|++.. +++=+..+.|..+|+..........+.......+++. .+..+.+-...+.|...+..+|+....+
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 88875544 4444556788888886432221222233456777775 3445556667788988988777654443
No 279
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.76 E-value=0.026 Score=52.41 Aligned_cols=241 Identities=12% Similarity=0.110 Sum_probs=138.5
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEe--------eCCcCCeeEEEEcCCCCCEEEEEeCCCeE
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL--------RGHADSVDQLCWDPKHADLIATASGDKTV 91 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~--------~~h~~~i~~~~~~~~~~~~l~s~~~d~~i 91 (293)
...|.++...++|. |..|..++-|..++..... ...... .-....|.++...++ +.+ ..|+.++-+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~l-Wigt~~~Gl 385 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPT---FHTWSYSPTQMNESSLSNKVVSSVCDDGQ-GKL-WIGTDGGGI 385 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS---CEEEC----CCCSSCCSSSCEEEEEECTT-SCE-EEEEBSSCE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc---ceeeccCccccccCCCCCcceEEEEEcCC-CCE-EEEeCCCcE
Confidence 45799999998885 6667777778888765321 111110 002345888887654 344 456666668
Q ss_pred EEEeCCCCeeeeee---e-ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeec---ccceeeeeEEecCCCEE
Q 022716 92 RLWDARSGKCSQQA---E-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 92 ~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~ 164 (293)
..+|..++...... . ....+.++...++|. |.+|+.++.+..+|.++.+...... ....+..+.-+..+.+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw 464 (781)
T 3v9f_A 386 NVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW 464 (781)
T ss_dssp EEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE
T ss_pred EEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE
Confidence 88887654432211 1 123455666666665 5557776778888875543221110 11234444333333222
Q ss_pred EEe------------------c-C-----CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec----cCCCee
Q 022716 165 FLT------------------T-G-----NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----LEWPVR 216 (293)
Q Consensus 165 ~~~------------------~-~-----~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~----~~~~v~ 216 (293)
+.+ . . ...+.++..++++++.+ |+..+-|..||.++... ..+.. ....|.
T Consensus 465 igt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~ 542 (781)
T 3v9f_A 465 IGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTIN 542 (781)
T ss_dssp EEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEE-EEECTTTTCSCSCEE
T ss_pred EEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeE
Confidence 211 0 1 23577888888887655 44444478898876643 33321 124688
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec-----CCCcceeEECCCCCeEEEE
Q 022716 217 TISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC-----RAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 217 ~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~la~~ 271 (293)
++...++|...++.. +|.+..+|..+++.. .+.. ...|.++...++|++.+++
T Consensus 543 ~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 543 QIYRSSKGQMWLATG-EGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp EEEECTTSCEEEEET-TEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEEC
T ss_pred EEEECCCCCEEEEEC-CCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEc
Confidence 998888888665544 776688888776532 3321 2346778888888766654
No 280
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.74 E-value=0.016 Score=49.35 Aligned_cols=210 Identities=12% Similarity=-0.005 Sum_probs=120.4
Q ss_pred cccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 20 KKKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
...+..++|++.+..|. +-...+.|+.++++.....................+++.+.++.++++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45788999998766665 44456888888875311000011112222344567777765566777777788999999876
Q ss_pred Ceeeeeee-ecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 99 GKCSQQAE-LSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
........ .-..+..+++.|.+..|..... .+.|...++....... ++...-.....
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--------------------~~~~~l~~P~g 250 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--------------------LVTENIQWPNG 250 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--------------------EECSSCSCEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--------------------EEECCCCceEE
Confidence 54333332 2234778999986665555442 3567777765422111 11112234567
Q ss_pred EEECCCCCEEEEe-cCCCcEEEEeCCCCEEEEEeec--cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716 176 IAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 176 ~~~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~ 250 (293)
|+++|++..|..+ +..+.|..+|+........... .-....++++ ..+..+.+....+.|...+..+|+.+..+
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred EEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 8888766554444 5567899999864432222222 1234557776 34455566667788888887777655444
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.69 E-value=0.015 Score=47.74 Aligned_cols=209 Identities=13% Similarity=0.015 Sum_probs=119.9
Q ss_pred cccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC
Q 022716 20 KKKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 98 (293)
-..+..++|++++..|. +-..++.|..++++...........+.........+++.+.++.++++-...+.|.+.+...
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34678999998766554 55556889888876411001111112222234467777765556666667788999999875
Q ss_pred Ceeeeeee-ecCceEEEEEcCCCCEEEEEeCC--CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEE
Q 022716 99 GKCSQQAE-LSGENINITYKPDGTHIAVGNRD--DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYC 175 (293)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d--~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 175 (293)
........ .-..+..+++.|.+..+...... +.|...++....... +....-.....
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--------------------~~~~~~~~P~g 168 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--------------------LVTENIQWPNG 168 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--------------------EECSSCSCEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--------------------EEECCCCCceE
Confidence 44332222 22456789999866655554432 577777764322110 01111223456
Q ss_pred EEECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeec---cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEE
Q 022716 176 IAIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQI 250 (293)
Q Consensus 176 ~~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~ 250 (293)
++++|++..| ++-+..+.|..+|+.... .+.+.. .......+++. .+...++....+.|...+..+++.+..+
T Consensus 169 la~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 7888765544 444556789999986432 222211 12345677774 4566667677788999988777655444
No 282
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.64 E-value=0.019 Score=47.53 Aligned_cols=232 Identities=14% Similarity=0.198 Sum_probs=128.4
Q ss_pred CCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCC----CC--CE-EEEEeC--CCeEEEEeCC--CC
Q 022716 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK----HA--DL-IATASG--DKTVRLWDAR--SG 99 (293)
Q Consensus 31 ~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~----~~--~~-l~s~~~--d~~i~vwd~~--~~ 99 (293)
...+++....++-+.+||++.+ ... .+.. +.++.+..-|. +. .+ ++|.-. +.+|++|++. ++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~---~l~--~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGK---MLH--SYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSC---EEE--EECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred CccEEEEEcCCCCEEEEcCCCc---EEE--EccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence 3456777777889999999531 222 2221 34455544331 11 12 333333 5789999763 43
Q ss_pred eeeeee-----e--ec-CceEEEEE--cCC-CC-EEEEEeCCCeEEEEEccc-------cceeeeecccceeeeeEEecC
Q 022716 100 KCSQQA-----E--LS-GENINITY--KPD-GT-HIAVGNRDDELTILDVRK-------FKPIHRRKFGYEVNEIAWNMT 160 (293)
Q Consensus 100 ~~~~~~-----~--~~-~~~~~~~~--~~~-~~-~l~~~~~d~~i~l~d~~~-------~~~~~~~~~~~~~~~v~~~~~ 160 (293)
. +... . .. ..+..+++ +|. ++ ++++...++.+..|++.. .+.+++...+.+
T Consensus 112 ~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq--------- 181 (355)
T 3amr_A 112 T-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ--------- 181 (355)
T ss_dssp C-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC---------
T ss_pred c-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC---------
Confidence 3 2222 1 11 33445555 664 44 688888899999988732 223333333332
Q ss_pred CCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC-----CCEEEEEee--ccCCCeeEEEE--ccCCC-EEEEe
Q 022716 161 GEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-----EMLCVRTFT--KLEWPVRTISF--SHTGD-YIASA 230 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~-----~~~~~~~~~--~~~~~v~~l~~--sp~~~-~l~s~ 230 (293)
+-.+.+++....|..+-++..|..++.+ +...+..+. .....+..|++ .++++ ||+.+
T Consensus 182 ------------~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS 249 (355)
T 3amr_A 182 ------------TEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS 249 (355)
T ss_dssp ------------EEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred ------------cceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence 2345556777778888887667667754 344454432 22346888887 56666 66555
Q ss_pred c-CCCcEEEEEcC-CCCEEEEEecC-C----------C--cceeEECCCC-CeEEEEEcCCCC--CCCCcceEEEEeee
Q 022716 231 S-EDLFIDISNVH-TGRTVHQIPCR-A----------A--MNSVEWNPKY-NLLAYAGDDKNK--YQADEGVFRIYGFE 291 (293)
Q Consensus 231 s-~d~~i~iw~~~-~~~~~~~~~~~-~----------~--i~~~~~sp~~-~~la~~~~d~~~--~~~~~~~~~~~~~~ 291 (293)
+ .+....+|+.. +.+.+..+.-. . . +..+.+.+.. +-|..+.++.|. --.....||++..|
T Consensus 250 sQG~~s~~Vydr~~~~~~vg~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg~n~~~~~~~~qnFk~v~w~ 328 (355)
T 3amr_A 250 SQGNSSYAIYDRQGKNKYVADFRITDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDGENIDHGQKANQNFKIVPWE 328 (355)
T ss_dssp EGGGTEEEEEESSTTCCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEECCCEEEEEEHH
T ss_pred cCCCCEEEEEECCCCCcEEEEEEecCCCCceeeeccCcceEEccccCCCCCCcEEEEecCCcccCCCCcCceEEEEEHH
Confidence 5 67789999997 56666555311 1 1 1223333321 245666555542 11234678888765
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.61 E-value=0.016 Score=45.88 Aligned_cols=210 Identities=8% Similarity=0.084 Sum_probs=118.3
Q ss_pred eeecCccccEEEEEECCCCCeEEE-EeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 022716 14 REYTGHKKKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (293)
Q Consensus 14 ~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~ 92 (293)
+.+.|-.+.+..++|+|+++.|.+ ...++.|...|.. . .....+.+.+. ...-.+++.+++ .++++.-.++.+.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~-~D~EGIa~~~~g-~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFV-KDLETIEYIGDN-QFVISDERDYAIY 94 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSC-SSEEEEEECSTT-EEEEEETTTTEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCC-CChHHeEEeCCC-EEEEEECCCCcEE
Confidence 345566678999999998876654 6667777777765 1 22233334332 235566776653 4556555577888
Q ss_pred EEeCCCCee---eeeeee-------cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceee-eeEEecCC
Q 022716 93 LWDARSGKC---SQQAEL-------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-EIAWNMTG 161 (293)
Q Consensus 93 vwd~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~-~v~~~~~~ 161 (293)
++++..... ...... ....-.+++.|+++.|.++.+.....+|.++...... ...+. ...+...
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~----~l~i~~~~~~~~~- 169 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN----ELHISKDKALQRQ- 169 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS----CCEEEECHHHHHT-
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC----ceeeecchhhccc-
Confidence 887754432 122221 1123579999998877777765555565554210000 00000 0000000
Q ss_pred CEEEEecCCCCEEEEEECCCC-CEEEEecCCCcEEEEeCCCCEEEEEe--e-cc------CCCeeEEEEccCCCEEEEec
Q 022716 162 EMFFLTTGNAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTF--T-KL------EWPVRTISFSHTGDYIASAS 231 (293)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~--~-~~------~~~v~~l~~sp~~~~l~s~s 231 (293)
........++++|.. .+++.....+.|..+|.+.. .+..+ . +. -.....|+|.|+|+ |...+
T Consensus 170 ------~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs 241 (255)
T 3qqz_A 170 ------FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS 241 (255)
T ss_dssp ------CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE
T ss_pred ------cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc
Confidence 001234578888864 45666666778888986543 33332 2 11 12578899999997 44447
Q ss_pred CCCcEEEEEc
Q 022716 232 EDLFIDISNV 241 (293)
Q Consensus 232 ~d~~i~iw~~ 241 (293)
+-+.++++.-
T Consensus 242 E~n~~y~f~~ 251 (255)
T 3qqz_A 242 EPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEEEe
Confidence 7777666654
No 284
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.59 E-value=0.0027 Score=57.81 Aligned_cols=162 Identities=12% Similarity=0.079 Sum_probs=93.4
Q ss_pred eEEEEEcC-CCCEEEEEeCCC-----------eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 111 NINITYKP-DGTHIAVGNRDD-----------ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 111 ~~~~~~~~-~~~~l~~~~~d~-----------~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
...+++.| +++.++.|+.+. .+.+||+.+.+-..... ........+..+++
T Consensus 188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~-----------------~~~~~~~~~~~~~~ 250 (656)
T 1k3i_A 188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV-----------------TVTKHDMFCPGISM 250 (656)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE-----------------EECSCCCSSCEEEE
T ss_pred ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc-----------------cCCCCCCccccccC
Confidence 34566777 888888887543 46777776544221110 00111222334667
Q ss_pred CCCCCEEEEecC-CCcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEec-CC-----CcEEEEEcCCCCEEEE
Q 022716 179 DPMGRYFAVGSA-DSLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASAS-ED-----LFIDISNVHTGRTVHQ 249 (293)
Q Consensus 179 ~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s-~d-----~~i~iw~~~~~~~~~~ 249 (293)
.+++++++.|+. ++.+.+||..+..-... +..... -.+++..++|+.++.|+ .+ ..+.+||..+.+-. .
T Consensus 251 ~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~-~ 328 (656)
T 1k3i_A 251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-S 328 (656)
T ss_dssp CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-E
T ss_pred CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce-e
Confidence 789999999984 56799999877643322 111111 23455668999999998 44 56899999876532 2
Q ss_pred Ee------cCCCcceeEECCCCCeEEEEEcCCCCCCCC-cceEEEEeee
Q 022716 250 IP------CRAAMNSVEWNPKYNLLAYAGDDKNKYQAD-EGVFRIYGFE 291 (293)
Q Consensus 250 ~~------~~~~i~~~~~sp~~~~la~~~~d~~~~~~~-~~~~~~~~~~ 291 (293)
++ ....-....+..++..++.++.++.+.... ...+..|+.+
T Consensus 329 ~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 329 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred CCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 21 111111123446677788888776554322 2455666543
No 285
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.59 E-value=0.00097 Score=61.20 Aligned_cols=210 Identities=13% Similarity=0.011 Sum_probs=112.8
Q ss_pred ccEEEEEECCCCCeEEEE-eCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 21 KKVHSVAWNCTGTKLASG-SVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~-~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
..+..++|++.+..|..+ ...+.|+.+++............+.........+++.+.++.++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 356688998877666554 4467888888763100000000111111223456666555566666566788999998765
Q ss_pred eeeeeeee-cCceEEEEEcCCCCEEEEEeC-C-CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 100 KCSQQAEL-SGENINITYKPDGTHIAVGNR-D-DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 100 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-d-~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
........ ...+..+++.|.+..|+.... . +.|..+++........ +...-.....|
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l--------------------~~~~l~~PnGl 545 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--------------------VTENIQWPNGI 545 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE--------------------SCSSCSSCCCE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE--------------------EeCCCCCccEE
Confidence 43322221 234567888886555444332 2 5666665543211100 00011122357
Q ss_pred EECCCC-CEEEEecCCCcEEEEeCCCCEEEEEeec--cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEe
Q 022716 177 AIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTK--LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIP 251 (293)
Q Consensus 177 ~~~~~~-~~l~~gs~d~~i~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 251 (293)
+++|++ +++++-+..+.|..+++........+.. .......|++..+ .++++....+.|..++..+++.+..+.
T Consensus 546 avd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 546 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 788764 4555556677899998864322222211 1123445565443 455566677889999988887766554
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.58 E-value=0.023 Score=47.04 Aligned_cols=188 Identities=14% Similarity=0.198 Sum_probs=108.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeeeeeecCceEEEEEcC----CCCE--EEE--EeC--CCeEEEEEcc-ccceeeeecc
Q 022716 80 DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP----DGTH--IAV--GNR--DDELTILDVR-KFKPIHRRKF 148 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~--l~~--~~~--d~~i~l~d~~-~~~~~~~~~~ 148 (293)
.+++.....+-+.+||+ +++.++.+.. +....+..-| .|+. ++. ... ++++.++++. ...++.....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 46677777889999999 7777766543 4444554443 2332 223 333 5789999773 2122222110
Q ss_pred c-ceeeeeEEecCCCEEEEecCCCCEEEEEE--CCC-CC-EEEEecCCCcEEEEeCC-------CCEEEEEeeccCCCee
Q 022716 149 G-YEVNEIAWNMTGEMFFLTTGNAGCYCIAI--DPM-GR-YFAVGSADSLVSLWDIS-------EMLCVRTFTKLEWPVR 216 (293)
Q Consensus 149 ~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~-~l~~gs~d~~i~iwd~~-------~~~~~~~~~~~~~~v~ 216 (293)
. .++ ......++-+++ +|. +. ++.+...+|.+..|++. +.+.++++.- ...+.
T Consensus 119 ~~~pv--------------~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~E 183 (355)
T 3amr_A 119 PDHPI--------------ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTE 183 (355)
T ss_dssp TTSCE--------------ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEE
T ss_pred cccCc--------------CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcc
Confidence 0 000 000022233444 664 43 67888888999999872 2355566643 45788
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEcC-----CCCEEEEEecC---CCcceeEE--CCCCC-eEEEEEcCCCCCCCCcceE
Q 022716 217 TISFSHTGDYIASASEDLFIDISNVH-----TGRTVHQIPCR---AAMNSVEW--NPKYN-LLAYAGDDKNKYQADEGVF 285 (293)
Q Consensus 217 ~l~~sp~~~~l~s~s~d~~i~iw~~~-----~~~~~~~~~~~---~~i~~~~~--sp~~~-~la~~~~d~~~~~~~~~~~ 285 (293)
.+...+...+|+.+-+|.-|..++.+ +++.+...... ..+..|+. .+++. +|.+++... ..+
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~-------~s~ 256 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN-------SSY 256 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG-------TEE
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC-------CEE
Confidence 99999999999999999667666744 23344444322 34556666 56666 555555332 345
Q ss_pred EEEeee
Q 022716 286 RIYGFE 291 (293)
Q Consensus 286 ~~~~~~ 291 (293)
-||+.+
T Consensus 257 ~Vydr~ 262 (355)
T 3amr_A 257 AIYDRQ 262 (355)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 666553
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.58 E-value=0.028 Score=47.85 Aligned_cols=185 Identities=9% Similarity=-0.032 Sum_probs=107.4
Q ss_pred eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe----eeeeee-ec
Q 022716 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LS 108 (293)
Q Consensus 34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~-~~ 108 (293)
+|+.+. ...|+..+++.... . .+......+..++|++....++++-...+.|..+++.... ...... .-
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~---~--~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY---T--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC---E--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCcce---e--EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 47788878764321 1 1223345678999988766677666678889988886521 111111 22
Q ss_pred CceEEEEEcCCC-CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716 109 GENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187 (293)
Q Consensus 109 ~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (293)
..+..+++.+.+ +..++-...+.|.+.++........ +...-.....|+++|.+..|..
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l--------------------~~~~~~~P~~iavdp~~g~ly~ 218 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--------------------FRENGSKPRAIVVDPVHGFMYW 218 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE--------------------EECSSCCEEEEEEETTTTEEEE
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEE--------------------EeCCCCCcceEEEecccCeEEE
Confidence 345678888744 4444545567888877764332111 1112233567888886555444
Q ss_pred ec-C-CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCCC
Q 022716 188 GS-A-DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTG 244 (293)
Q Consensus 188 gs-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~~ 244 (293)
.. . .+.|...++............-...+.|+++|++..|+.+ +....|...+....
T Consensus 219 td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 219 TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp EECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 43 2 3678888876433222222223567999999887766554 56678999988643
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.48 E-value=0.066 Score=49.73 Aligned_cols=180 Identities=9% Similarity=0.002 Sum_probs=104.2
Q ss_pred CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe----eeeeee-ecCceEEEE
Q 022716 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAE-LSGENINIT 115 (293)
Q Consensus 41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~~-~~~~~~~~~ 115 (293)
...|+..+++.... . .+......+..+++.+....++++-...+.|+.+++.... ....+. .-..+..++
T Consensus 403 ~~~Ir~i~l~~~~~---~--~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA 477 (791)
T 3m0c_C 403 RHEVRKMTLDRSEY---T--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 477 (791)
T ss_dssp BSSEEEECTTSCCC---E--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred ccceeEeeccCCcc---e--eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence 35677777754221 1 1223345577888987666677776777889888886531 111111 123456788
Q ss_pred EcCCCCEEE-EEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec-CC-C
Q 022716 116 YKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS-AD-S 192 (293)
Q Consensus 116 ~~~~~~~l~-~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs-~d-~ 192 (293)
+.+.+..|. +-...++|.+.++....... ++...-.....|+++|....|.... .+ +
T Consensus 478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~--------------------l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~ 537 (791)
T 3m0c_C 478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKT--------------------LFRENGSKPRAIVVDPVHGFMYWTDWGTPA 537 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEE--------------------EEECTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred eeecCCcEEEEecCCCeEEEEeCCCCeEEE--------------------EEeCCCCCcceEEEecCCCCEEEecCCCCC
Confidence 887765444 44456788888876433211 1112223456788888755444443 22 6
Q ss_pred cEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe-cCCCcEEEEEcCCCC
Q 022716 193 LVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA-SEDLFIDISNVHTGR 245 (293)
Q Consensus 193 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d~~i~iw~~~~~~ 245 (293)
.|...++........+...-...+.|++.|.+..|+.+ .....|...++....
T Consensus 538 ~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 538 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 78888886544333333333578999999876666544 456778888875443
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.38 E-value=0.041 Score=45.16 Aligned_cols=180 Identities=8% Similarity=0.007 Sum_probs=103.7
Q ss_pred CCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeeee-e-eecCceEEEEEcC
Q 022716 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-A-ELSGENINITYKP 118 (293)
Q Consensus 41 dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~-~~~~~~~~~~~~~ 118 (293)
...|+..+++....... ....+ ......+.|.+..+.++.+-...+.|..++...+..... . ..-..+..+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~--~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT--IVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCE--EEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEE--EEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 46788888875421111 11111 234568889886666777777788999999876532111 1 1123456788887
Q ss_pred CCC-EEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEec--CCCcEE
Q 022716 119 DGT-HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGS--ADSLVS 195 (293)
Q Consensus 119 ~~~-~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs--~d~~i~ 195 (293)
.+. .+++-...+.|.++++....... +....-.....++++|.+..|.... ..+.|.
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~--------------------l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLRKV--------------------LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE 148 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEE--------------------EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEE
T ss_pred CCCeEEEEECCCCEEEEEECCCCcEEE--------------------EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEE
Confidence 544 44454556788888876432111 1111223445677887655444443 256788
Q ss_pred EEeCCCCEEEEEeeccCCCeeEEEEccCCCEE-EEecCCCcEEEEEcCC
Q 022716 196 LWDISEMLCVRTFTKLEWPVRTISFSHTGDYI-ASASEDLFIDISNVHT 243 (293)
Q Consensus 196 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s~s~d~~i~iw~~~~ 243 (293)
.+++............-...+.|+++|++..| ++-+..+.|..++...
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 88775332211122222457899999976655 4445678899998864
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.33 E-value=0.05 Score=44.81 Aligned_cols=221 Identities=12% Similarity=0.056 Sum_probs=111.2
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEE-Eee-CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI-ELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~-~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~ 97 (293)
...+.++.|++ +. +..++.+|.|.. ..+ . +..... ... .+...+..+.+.+. ..++ .++.++.|.. ..+
T Consensus 79 ~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~D-g--G~tW~~~~~~~~~~~~~~~i~~~~~-~~~~-~~~~~g~v~~-S~D 149 (327)
T 2xbg_A 79 DYRFNSVSFQG-NE-GWIVGEPPIMLH-TTD-G--GQSWSQIPLDPKLPGSPRLIKALGN-GSAE-MITNVGAIYR-TKD 149 (327)
T ss_dssp CCEEEEEEEET-TE-EEEEEETTEEEE-ESS-T--TSSCEECCCCTTCSSCEEEEEEEET-TEEE-EEETTCCEEE-ESS
T ss_pred CccEEEEEecC-Ce-EEEEECCCeEEE-ECC-C--CCCceECccccCCCCCeEEEEEECC-CCEE-EEeCCccEEE-EcC
Confidence 34688999976 43 444555665443 222 1 111111 111 12234566665543 3344 4455665432 222
Q ss_pred CCeeeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEc--cccceeeeecccceeeeeEEecCCCEEEEecCCCCE
Q 022716 98 SGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGC 173 (293)
Q Consensus 98 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 173 (293)
.++.-.... .......+++.|++..++++...+..+-.|- .+.++.. ......+
T Consensus 150 gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~----------------------~~~~~~~ 207 (327)
T 2xbg_A 150 SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN----------------------RTTSRRL 207 (327)
T ss_dssp TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE----------------------CCSSSCE
T ss_pred CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC----------------------CCCCCcc
Confidence 332212111 2334567888898887776654333333332 1111110 0112345
Q ss_pred EEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeec----cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEE
Q 022716 174 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK----LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQ 249 (293)
Q Consensus 174 ~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~----~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~ 249 (293)
..+++.++++.++++ .+|.+.+.+...+..-..+.. ....+.++.+.|+++.++.+. ++.+ ++....|+.-..
T Consensus 208 ~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~ 284 (327)
T 2xbg_A 208 HNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQ 284 (327)
T ss_dssp EEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEE
T ss_pred ceeEECCCCCEEEEe-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEE
Confidence 677788888766554 567777764332332222211 123588899998887777655 5666 344444544333
Q ss_pred Ee----cCCCcceeEECCCCCeEEEEEcCC
Q 022716 250 IP----CRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 250 ~~----~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
+. ....+.++.|.+++. +..++.++
T Consensus 285 ~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G 313 (327)
T 2xbg_A 285 DVDVKKVPSNFYKILFFSPDQ-GFILGQKG 313 (327)
T ss_dssp CGGGTTSSSCCCEEEEEETTE-EEEECSTT
T ss_pred cCccCCCCCCeEEEEEECCCc-eEEEcCCc
Confidence 32 134578899976554 45555554
No 291
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.30 E-value=0.051 Score=44.48 Aligned_cols=183 Identities=9% Similarity=-0.008 Sum_probs=105.1
Q ss_pred eEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC----Ceeeeeeee-c
Q 022716 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS----GKCSQQAEL-S 108 (293)
Q Consensus 34 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~~-~ 108 (293)
+|+.+.. ..|+..+++.... .. +.........+.|.+.+..++++-..++.|..+++.. ......... -
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~---~~--~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEY---TS--LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCC---EE--EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcce---Ee--hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 3443333 5678888865321 11 1223345678899887666777777789999999875 221111111 1
Q ss_pred CceEEEEEcCCCCEE-EEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEE
Q 022716 109 GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAV 187 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l-~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (293)
..+..+++.+.+..| ++-...+.|.++|+....... ++.........++++|.+..|..
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~--------------------~~~~~~~~P~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--------------------LFRENGSKPRAIVVDPVHGFMYW 136 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEE--------------------EEECTTCCEEEEEEETTTTEEEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEE--------------------EEECCCCCcceEEeCCCCCEEEE
Confidence 345678888755544 444567788888875432111 11112234567888886554443
Q ss_pred ecC-C-CcEEEEeCCCCEEEEEe-eccCCCeeEEEEccCCCEEE-EecCCCcEEEEEcCC
Q 022716 188 GSA-D-SLVSLWDISEMLCVRTF-TKLEWPVRTISFSHTGDYIA-SASEDLFIDISNVHT 243 (293)
Q Consensus 188 gs~-d-~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~-s~s~d~~i~iw~~~~ 243 (293)
... . +.|..+++.... ...+ ...-...+.|+++|++..|. +-+..+.|...+...
T Consensus 137 ~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 137 TDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 333 3 678888875432 2223 22234678999999876664 445667899999864
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.30 E-value=0.069 Score=45.92 Aligned_cols=211 Identities=11% Similarity=0.114 Sum_probs=110.2
Q ss_pred ccccEEEEEECCCCCeEEEEeCC---Cc-EEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 19 HKKKVHSVAWNCTGTKLASGSVD---QT-ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 19 h~~~v~~l~~s~~~~~l~s~~~d---g~-v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
.......++|+++|+.+++.... .. +...+... ...... .+. .-.....++++|.++.++++-..++.|+.+
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~-~~~~~~--~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~ 255 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS-GFTERL--SLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSY 255 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG-TTCCEE--EEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEE
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC-Ceeccc--ccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEE
Confidence 34568899999999944443321 11 22222211 111001 111 122345667888556677666678889999
Q ss_pred eCCCCeeee-eeeec--CceEEEEEcCCCCEEEEEe-CCCeEEEEEccccc-eeeeecccceeeeeEEe--cCCCE--EE
Q 022716 95 DARSGKCSQ-QAELS--GENINITYKPDGTHIAVGN-RDDELTILDVRKFK-PIHRRKFGYEVNEIAWN--MTGEM--FF 165 (293)
Q Consensus 95 d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~~~~-~d~~i~l~d~~~~~-~~~~~~~~~~~~~v~~~--~~~~~--~~ 165 (293)
|..++.... ..... .....++++|+++.|.... ..++|..+++.... .+.. +..+.-. ..+-. ..
T Consensus 256 d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~------~~~~ag~~g~~g~~dg~~ 329 (433)
T 4hw6_A 256 DPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAV------PYIVCGQHSSPGWVDGMG 329 (433)
T ss_dssp CTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCC------CEEEEECTTCCCCBCEEG
T ss_pred ECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCc------EEEEEecCCCCccCCCcc
Confidence 988665522 22221 2234699999998555544 56788888765211 0000 0000000 00000 00
Q ss_pred EecCCCCEEEEEE---------CCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccC------------------CCeeEE
Q 022716 166 LTTGNAGCYCIAI---------DPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE------------------WPVRTI 218 (293)
Q Consensus 166 ~~~~~~~~~~~~~---------~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~------------------~~v~~l 218 (293)
....-.....+++ ++++.++++-...+.|+.++. ++. +.++.+.. .....|
T Consensus 330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~gi 407 (433)
T 4hw6_A 330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSI 407 (433)
T ss_dssp GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEE
T ss_pred cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEE
Confidence 0000123456788 777888777777888999985 453 33333211 135678
Q ss_pred EEc-cCCCEEEEecCCCcEEEEEc
Q 022716 219 SFS-HTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 219 ~~s-p~~~~l~s~s~d~~i~iw~~ 241 (293)
++. ++|.+.++-.....|+..+.
T Consensus 408 avd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 408 AYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECCCCEEEEEeCCCCEEEEEec
Confidence 887 55655555555566665554
No 293
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.28 E-value=0.06 Score=44.93 Aligned_cols=235 Identities=14% Similarity=0.018 Sum_probs=117.4
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee---CCcCCeeEEEEcCC---CCCEEEEEeC---C--
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPK---HADLIATASG---D-- 88 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~---~~~~l~s~~~---d-- 88 (293)
-.....++|.|+|+.+ .+..+|.|++++.+ . ......+. .-......++++|+ +..++++-+. +
T Consensus 28 l~~P~~ia~~pdG~l~-V~e~~g~I~~~d~~--G--~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYL-VTERPGRLVLISPS--G--KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp CSCEEEEEEEETTEEE-EEETTTEEEEECSS--C--EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CCCCeEEEEcCCCeEE-EEeCCCEEEEEeCC--C--ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 3567899999999754 45666999888632 1 11111111 12345788999986 4455554442 3
Q ss_pred --CeEEEEeCCCC--ee---eee---eeec--CceEEEEEcCCCCEEEEEeCC-------------CeEEEEEcccccee
Q 022716 89 --KTVRLWDARSG--KC---SQQ---AELS--GENINITYKPDGTHIAVGNRD-------------DELTILDVRKFKPI 143 (293)
Q Consensus 89 --~~i~vwd~~~~--~~---~~~---~~~~--~~~~~~~~~~~~~~l~~~~~d-------------~~i~l~d~~~~~~~ 143 (293)
..|..++.... .. ... +... .....++|.|||...++.+.. +.|.-++....-+.
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 56777776543 11 111 1111 123458999999866664322 23333332211000
Q ss_pred eeecccceeeeeEEecCCCEEEEecCCCCEEEEEECC-CCCEEEEecCCC---cEEEEeCCC---------------C-E
Q 022716 144 HRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDP-MGRYFAVGSADS---LVSLWDISE---------------M-L 203 (293)
Q Consensus 144 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~gs~d~---~i~iwd~~~---------------~-~ 203 (293)
. +|-........+.-...-++++| +++++++-...+ .|.+...-. . .
T Consensus 183 ~-------------npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 249 (354)
T 3a9g_A 183 D-------------NPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVD 249 (354)
T ss_dssp T-------------SSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred C-------------CCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcC
Confidence 0 00000011111112233566676 455444432221 233322100 0 0
Q ss_pred EEEEeeccCCCeeEEEEc-------cCCCEEEEecCCCcEEEEEcCCC-CEE--EEEec--CCCcceeEECCCCCeEEEE
Q 022716 204 CVRTFTKLEWPVRTISFS-------HTGDYIASASEDLFIDISNVHTG-RTV--HQIPC--RAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 204 ~~~~~~~~~~~v~~l~~s-------p~~~~l~s~s~d~~i~iw~~~~~-~~~--~~~~~--~~~i~~~~~sp~~~~la~~ 271 (293)
.+..+.........++|. .+|.++++.-..+.|...++... +.. ..+.. ...+..+++.|+|.++++.
T Consensus 250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 250 PVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp CSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred CEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 111121112356778883 57777777777778888887653 332 22321 3468899999999877776
Q ss_pred E
Q 022716 272 G 272 (293)
Q Consensus 272 ~ 272 (293)
.
T Consensus 330 ~ 330 (354)
T 3a9g_A 330 S 330 (354)
T ss_dssp C
T ss_pred e
Confidence 4
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.26 E-value=0.1 Score=47.10 Aligned_cols=203 Identities=8% Similarity=-0.043 Sum_probs=113.1
Q ss_pred ccEEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 21 KKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
..+..++|++.+..|.-+. ..+.|..++++... ... ..+..-......+++.+.++.++++-...+.|.+.+++..
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--~~~-~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQ-NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--ceE-EEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 4578999998777665554 46778888775321 111 1122222456778887766667777777899999998765
Q ss_pred eeeeee-eecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 100 KCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
...... ..-..+..+++.|.+..|..... .+.|...++..... ..++...-.....|
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~--------------------~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------------------FIIINSEIYWPNGL 176 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------------------EEEECSSCSSEEEE
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce--------------------EEEEeCCCCCCcEE
Confidence 432222 12234667888887555544442 24555555433211 11111222345678
Q ss_pred EECCCCC-EEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEE
Q 022716 177 AIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTV 247 (293)
Q Consensus 177 ~~~~~~~-~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~ 247 (293)
++++++. ++++=...+.|..+|+..........+.......|++..+ ....+-...+.|...|..+++..
T Consensus 177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred EEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 8888644 4455556678988888654332222211122346676655 44455556778888888776543
No 295
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.19 E-value=0.046 Score=46.40 Aligned_cols=147 Identities=13% Similarity=0.148 Sum_probs=86.2
Q ss_pred CCCeEEEEeCCCCeeeeeeeec-----CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee-ecccceeeeeEEecC
Q 022716 87 GDKTVRLWDARSGKCSQQAELS-----GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMT 160 (293)
Q Consensus 87 ~d~~i~vwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~-~~~~~~~~~v~~~~~ 160 (293)
.+..||.-++..+..=+.+... ..+..+..+|+|++|+..+ +.+|.+..+........ ......++...+...
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~ 117 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSID 117 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcC
Confidence 3467777777643311222332 1456789999999998886 56899998873221110 000011111122211
Q ss_pred CCEEEEecCCCCEEEEEECCC---CCEEEEecCCCcEEEEeCCCC-EEEEEee---------ccCCCeeEEEEccCCCEE
Q 022716 161 GEMFFLTTGNAGCYCIAIDPM---GRYFAVGSADSLVSLWDISEM-LCVRTFT---------KLEWPVRTISFSHTGDYI 227 (293)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~gs~d~~i~iwd~~~~-~~~~~~~---------~~~~~v~~l~~sp~~~~l 227 (293)
... .....++..+.|||- +..|++-..|+.|++||+... .....+. .....|.+++|.+++-.|
T Consensus 118 ~~~---~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTL 194 (452)
T 3pbp_A 118 EEE---VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTL 194 (452)
T ss_dssp GCC-----CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCE
T ss_pred Ccc---cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEE
Confidence 110 113567888889986 468999999999999998752 1111221 122578899999987656
Q ss_pred EE--ecCCCcEE
Q 022716 228 AS--ASEDLFID 237 (293)
Q Consensus 228 ~s--~s~d~~i~ 237 (293)
.. ....|.|+
T Consensus 195 Yvl~~t~~GDIY 206 (452)
T 3pbp_A 195 YCLNTTEGGDIF 206 (452)
T ss_dssp EEEECTTSCEEE
T ss_pred EEEecCCCCCEE
Confidence 55 55778775
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.08 E-value=0.13 Score=44.88 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=70.6
Q ss_pred ccEEEEEE-------CCCCCeEEEEeCCC-c------EEEeecCCC-CCCc-e--eEEEeeCCcCCeeEEEEcCCCCCEE
Q 022716 21 KKVHSVAW-------NCTGTKLASGSVDQ-T------ARVWHIEPH-GHGK-V--KDIELRGHADSVDQLCWDPKHADLI 82 (293)
Q Consensus 21 ~~v~~l~~-------s~~~~~l~s~~~dg-~------v~iw~~~~~-~~~~-~--~~~~~~~h~~~i~~~~~~~~~~~~l 82 (293)
.....++| +++|+.|..+...+ . |.+.+.... .... . ..+... .....++.+|+++.++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~---~~p~giavdp~~g~LY 262 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY---KQCNGATIHPINGELY 262 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE---SCCCCEEECTTTCCEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC---CCceEEEEcCCCCeEE
Confidence 35899999 99999777666554 2 445543321 1110 0 111111 1234667888777788
Q ss_pred EEEeCCCeEEEEeCC-------CCee-----------e-eeeee--cCceEEEEEcCCCCEEEEE-eCCCeEEEEEcc
Q 022716 83 ATASGDKTVRLWDAR-------SGKC-----------S-QQAEL--SGENINITYKPDGTHIAVG-NRDDELTILDVR 138 (293)
Q Consensus 83 ~s~~~d~~i~vwd~~-------~~~~-----------~-~~~~~--~~~~~~~~~~~~~~~l~~~-~~d~~i~l~d~~ 138 (293)
++-..++.|..+|+. ++.. . ..... ...+..++++|+|+.|..+ +..++|+.+|..
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 888889999999987 4443 1 11222 2346789999999964444 456788886654
No 297
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.01 E-value=0.22 Score=46.21 Aligned_cols=239 Identities=9% Similarity=0.064 Sum_probs=134.2
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEee------CCcCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR------GHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~------~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vw 94 (293)
..|.++...++|...+ |..+ -+.+||.... ........ -....|.++...+++ .|..|+..+-+.++
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~---~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~~Gl~~~ 283 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTE---TFTNFHNNPGNIHGALSSYIFSIKQLKDN--KLWIATELNGIMIL 283 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTT---EEEC-----------CCCCEEEEEECTTS--EEEEEESSSCEEEE
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCC---cEEEEEcCCCccccccCceEEEEEECCCC--CEEEEeCCCCeEEE
Confidence 4688998888886554 4444 5788886532 11111100 123468888776543 34456664667888
Q ss_pred eCCCCeeeeeee--------------e-cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeee---------ec-cc
Q 022716 95 DARSGKCSQQAE--------------L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR---------RK-FG 149 (293)
Q Consensus 95 d~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~---------~~-~~ 149 (293)
|..++....... . ...+.++...++|. +..|+.++-+..++........- .. ..
T Consensus 284 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (781)
T 3v9f_A 284 DLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSN 362 (781)
T ss_dssp ETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSS
T ss_pred CCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCC
Confidence 887665322111 1 12355677777765 66777777788888654321110 00 11
Q ss_pred ceeeeeEEecCCCEEEEec-----------------------CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEE
Q 022716 150 YEVNEIAWNMTGEMFFLTT-----------------------GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 206 (293)
Q Consensus 150 ~~~~~v~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~ 206 (293)
..+..+.-+..+.+.+.+. ....+.++..++++.+.+ |+.++-|..+|.+++.. .
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~ 440 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF-Q 440 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE-E
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE-E
Confidence 2345554444443332221 123467777777777554 66667789999877643 2
Q ss_pred Eeec---cCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec------CCCcceeEECCCCCeEEEE
Q 022716 207 TFTK---LEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC------RAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 207 ~~~~---~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~------~~~i~~~~~sp~~~~la~~ 271 (293)
.+.. ....|.++...++|+..+.. . +-+..++..+++....... ...|.++...++|.+.+.+
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred EeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence 3321 23578899888888755543 3 4488888877654332211 2457788888888765544
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.92 E-value=0.22 Score=44.94 Aligned_cols=199 Identities=8% Similarity=0.015 Sum_probs=116.7
Q ss_pred ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
..+..++|++.+..|. +-..++.|+.++++... . ..+ ...-......+++.+.++.++++-...+.|.+.+++..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~--~-~~v-~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA--L-EHV-VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--C-EEE-ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC--c-EEE-EeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 4678999998776665 55557888888876321 1 111 11112334567776665667777777889999998654
Q ss_pred eeeeee-eecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 100 KCSQQA-ELSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 100 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
...... ..-..+..+++.|....|..... .+.|...++....... +...-.....|
T Consensus 113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~---------------------l~~~~~~P~Gl 171 (628)
T 4a0p_A 113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT---------------------LVPNVGRANGL 171 (628)
T ss_dssp TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---------------------EECSCSSEEEE
T ss_pred cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE---------------------EECCCCCcceE
Confidence 322222 22245678999986555554442 4566666654322111 11123345678
Q ss_pred EECCCCCE-EEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 177 AIDPMGRY-FAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 177 ~~~~~~~~-l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
++++++.. +++=...+.|..+|+..... +.+...-.....|++.. +...++-...+.|...|..+++.
T Consensus 172 alD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 172 TIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred EEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 88886544 44445667888888864322 22333233456777754 45556666678888888766653
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.84 E-value=0.15 Score=41.84 Aligned_cols=203 Identities=10% Similarity=0.096 Sum_probs=118.5
Q ss_pred EEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeC----CcC--CeeEEEE---cCCCCCEEEEEe------
Q 022716 23 VHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRG----HAD--SVDQLCW---DPKHADLIATAS------ 86 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~----h~~--~i~~~~~---~~~~~~~l~s~~------ 86 (293)
--+++|.+....|..++ ..++|..|+.... ......+.+ ... .+..+.+ .|. +.+++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~ 90 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFN 90 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccc
Confidence 34788987666665555 7999999988632 122222222 111 3578888 565 45665433
Q ss_pred -------CCCeEEEEeCC---CCeeeeeeeec--------------CceEEEEEcCCCCEEEEEeCC-CeEEEEEccccc
Q 022716 87 -------GDKTVRLWDAR---SGKCSQQAELS--------------GENINITYKPDGTHIAVGNRD-DELTILDVRKFK 141 (293)
Q Consensus 87 -------~d~~i~vwd~~---~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~d-~~i~l~d~~~~~ 141 (293)
.+..+..+|+. +++......+. .....++..++|+..++++.. +.|..++.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 26779999998 77665544432 135578999999999988887 877777654321
Q ss_pred eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEee--cc---CCC
Q 022716 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFT--KL---EWP 214 (293)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~--~~---~~~ 214 (293)
.. .|..... .........-|+++|+++.|++....+.|.-+|+..... +. .. +. -..
T Consensus 171 -~~-----------~~~~~~~---~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~ 234 (334)
T 2p9w_A 171 -VS-----------TFAWESG---NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSG 234 (334)
T ss_dssp -EE-----------EEEECCC---CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTT
T ss_pred -Ee-----------eeeecCC---CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccC
Confidence 11 1110000 000111234578999999888887799999999875332 21 11 21 112
Q ss_pred eeEE-EEccCCCE-EEEecCCCcEEEEEcCCCC
Q 022716 215 VRTI-SFSHTGDY-IASASEDLFIDISNVHTGR 245 (293)
Q Consensus 215 v~~l-~~sp~~~~-l~s~s~d~~i~iw~~~~~~ 245 (293)
...| .--.+|+. |++.+..+.+.+.+...-+
T Consensus 235 ~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 235 TEKIVTVPVGNESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEEEEEEEETTEEEEEEEETTEEEEEECSSTTS
T ss_pred cccccccccCCEEEEEEcCCCCEEEEECCCCcc
Confidence 3443 22246776 5666666665565554433
No 300
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.77 E-value=0.19 Score=41.89 Aligned_cols=217 Identities=10% Similarity=0.049 Sum_probs=111.7
Q ss_pred cccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEE--EeeCCcCCeeEEEEcCC---CCCEEEEEeC-------
Q 022716 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI--ELRGHADSVDQLCWDPK---HADLIATASG------- 87 (293)
Q Consensus 20 ~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~--~~~~h~~~i~~~~~~~~---~~~~l~s~~~------- 87 (293)
-.....++|.|+|+.|..+...|.|++++.+.......... ...........++++|+ +..++++-..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34678999999998344555679999887432100000000 01112334678899985 4445554332
Q ss_pred CCeEEEEeCCCC--ee--ee-eee-ec------CceEEEEEcCCCCEEEEEeC-------------CCeEEEEEccccc-
Q 022716 88 DKTVRLWDARSG--KC--SQ-QAE-LS------GENINITYKPDGTHIAVGNR-------------DDELTILDVRKFK- 141 (293)
Q Consensus 88 d~~i~vwd~~~~--~~--~~-~~~-~~------~~~~~~~~~~~~~~l~~~~~-------------d~~i~l~d~~~~~- 141 (293)
...|..++.... .. .. .+. .. .....++|.|||.+.++.+. .++|.-++.....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 234555665432 11 11 111 11 11346999999965555432 2456666654321
Q ss_pred -----------eeeeecccc-eeeeeEEec-CCCEEEEecCC--------------------------------------
Q 022716 142 -----------PIHRRKFGY-EVNEIAWNM-TGEMFFLTTGN-------------------------------------- 170 (293)
Q Consensus 142 -----------~~~~~~~~~-~~~~v~~~~-~~~~~~~~~~~-------------------------------------- 170 (293)
.......+. ....+.|++ .+.++....+.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 011111121 256677887 45444422210
Q ss_pred --------------CCEEEEEECC-------CCCEEEEecCCCcEEEEeCCCCEEEEE--e-eccCCCeeEEEEccCCCE
Q 022716 171 --------------AGCYCIAIDP-------MGRYFAVGSADSLVSLWDISEMLCVRT--F-TKLEWPVRTISFSHTGDY 226 (293)
Q Consensus 171 --------------~~~~~~~~~~-------~~~~l~~gs~d~~i~iwd~~~~~~~~~--~-~~~~~~v~~l~~sp~~~~ 226 (293)
.....+++.. ++.++++.-..+.|...+++.+..... + ......+..+++.|||.+
T Consensus 257 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l 336 (353)
T 2g8s_A 257 VAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYL 336 (353)
T ss_dssp CTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCE
T ss_pred CCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcE
Confidence 0122344432 466666666677777777765543322 2 122347889999999986
Q ss_pred EEE-ecCCCcE
Q 022716 227 IAS-ASEDLFI 236 (293)
Q Consensus 227 l~s-~s~d~~i 236 (293)
.++ -..++.|
T Consensus 337 yv~td~~~g~I 347 (353)
T 2g8s_A 337 YVLTDESSGEL 347 (353)
T ss_dssp EEEECSTTEEE
T ss_pred EEEEeCCCCEE
Confidence 554 3334433
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.69 E-value=0.011 Score=54.23 Aligned_cols=156 Identities=8% Similarity=-0.071 Sum_probs=84.5
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCC----Ceeeeeee-ecCceEEEEEcCCC-CEEEEEeCCCeEEEEEccccc
Q 022716 68 SVDQLCWDPKHADLIATASGDKTVRLWDARS----GKCSQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFK 141 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~----~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~l~d~~~~~ 141 (293)
.+..++|.+....++++-...+.|+.+++.. ......+. .-..+..+++.+.+ +.+++-...+.|.++++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 4567788876555555555678899988865 11111111 11234467777544 444444456778888765432
Q ss_pred eeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecC--CCcEEEEeCCCCEEEEEeeccCCCeeEEE
Q 022716 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRTFTKLEWPVRTIS 219 (293)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~ 219 (293)
...... ........++++|.+.+|..... .+.|..+++........+...-...+.|+
T Consensus 487 ~~~l~~--------------------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGla 546 (699)
T 1n7d_A 487 RKTLFR--------------------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 546 (699)
T ss_dssp EEEECC--------------------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEE
T ss_pred eEEEEe--------------------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEE
Confidence 211110 01112235677776544443332 26777777653221111112223567899
Q ss_pred EccCCCEE-EEecCCCcEEEEEcCC
Q 022716 220 FSHTGDYI-ASASEDLFIDISNVHT 243 (293)
Q Consensus 220 ~sp~~~~l-~s~s~d~~i~iw~~~~ 243 (293)
|+|++..| ++-+....|..++...
T Consensus 547 vd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 547 LDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp ECTTTCCEEEEETTTTEEEEECSSS
T ss_pred EeccCCEEEEEecCCCeEEEEccCC
Confidence 99986554 5556677899998864
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.54 E-value=0.35 Score=42.16 Aligned_cols=210 Identities=10% Similarity=0.047 Sum_probs=106.5
Q ss_pred cEEEEEECCC-CCeE-EEEeCCCcEEEeecCCCCCCceeEEEeeC--CcCCeeEEEE-------cCCCCCEEEEEeCCC-
Q 022716 22 KVHSVAWNCT-GTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRG--HADSVDQLCW-------DPKHADLIATASGDK- 89 (293)
Q Consensus 22 ~v~~l~~s~~-~~~l-~s~~~dg~v~iw~~~~~~~~~~~~~~~~~--h~~~i~~~~~-------~~~~~~~l~s~~~d~- 89 (293)
....|+|+|. ...| ++-...+.|++.|++.+ .+..+.-.+ .......++| ++++..++++-..++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 4678999983 4444 44444567888887642 222111111 1234788899 887543444433332
Q ss_pred -----eEEEEeCCC-Ceee-----eeeeecCceEEEEEcCCCC-EEEEEeCCCeEEEEEcc-------ccceeee---ec
Q 022716 90 -----TVRLWDARS-GKCS-----QQAELSGENINITYKPDGT-HIAVGNRDDELTILDVR-------KFKPIHR---RK 147 (293)
Q Consensus 90 -----~i~vwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~-------~~~~~~~---~~ 147 (293)
.|.+.+... +... ..+....++..++.+|++. .+++-..++.|..+|+. +...... ..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 255555333 2221 1222223556788899544 45555577889999987 3221000 00
Q ss_pred ccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCE-EEEecCCCcEEEEeC--CCCEE--EEEeecc---C-------
Q 022716 148 FGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRY-FAVGSADSLVSLWDI--SEMLC--VRTFTKL---E------- 212 (293)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~gs~d~~i~iwd~--~~~~~--~~~~~~~---~------- 212 (293)
.+ ... .++..........++++|++++ +++=+....|+.++. ..+.. ...+.+. .
T Consensus 297 ~g-~~~---------~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~ 366 (496)
T 3kya_A 297 PN-TFK---------QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVG 366 (496)
T ss_dssp TT-TEE---------EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBG
T ss_pred cc-ccc---------eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcc
Confidence 00 000 0111112233567899999985 455456677888654 33321 0122221 0
Q ss_pred -----CCee-EEEEc-------cCCCEEEEecCCCcEEEEEcCCCC
Q 022716 213 -----WPVR-TISFS-------HTGDYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 213 -----~~v~-~l~~s-------p~~~~l~s~s~d~~i~iw~~~~~~ 245 (293)
.... .+... ++|.+.++-.....|+.++ .+|.
T Consensus 367 ~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~ 411 (496)
T 3kya_A 367 TEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI 411 (496)
T ss_dssp GGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB
T ss_pred cccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC
Confidence 1233 34443 4566666666777788777 3553
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.49 E-value=0.25 Score=39.85 Aligned_cols=227 Identities=8% Similarity=0.051 Sum_probs=106.3
Q ss_pred CeEEEEeCC--CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC----CeEEEEeCCCCeeeeeee
Q 022716 33 TKLASGSVD--QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD----KTVRLWDARSGKCSQQAE 106 (293)
Q Consensus 33 ~~l~s~~~d--g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~ 106 (293)
..++.|+.+ ..+.+||...+...... .++.....-..+.. +..+++.|+.+ ..+.+||..+.+......
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIR--CPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECC--CCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCC--CCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 345566653 56777887643211111 01111111122222 23566666654 567888988876443322
Q ss_pred ecCce--EEEEEcCCCCEEEEEeCC------CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEE
Q 022716 107 LSGEN--INITYKPDGTHIAVGNRD------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAI 178 (293)
Q Consensus 107 ~~~~~--~~~~~~~~~~~l~~~~~d------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 178 (293)
..... ..++ ..+++.++.|+.+ ..+.++|+.+..-......+.. .....++.
T Consensus 88 ~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~------------------r~~~~~~~- 147 (306)
T 3ii7_A 88 PPTPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ------------------RCSHGMVE- 147 (306)
T ss_dssp CSSCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC------------------CBSCEEEE-
T ss_pred CCccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC------------------cceeEEEE-
Confidence 22111 1122 2256677777654 3467777765432211111000 00111122
Q ss_pred CCCCCEEEEecC---------CCcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEecCC-----CcEEEEEcCC
Q 022716 179 DPMGRYFAVGSA---------DSLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASED-----LFIDISNVHT 243 (293)
Q Consensus 179 ~~~~~~l~~gs~---------d~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~ 243 (293)
.++++++.|+. -+.+.+||+.+..-.. +.....+ ....+..-+++.++.|+.+ ..+.++|..+
T Consensus 148 -~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 148 -ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp -ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTT
T ss_pred -ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 25566666653 3458899988764322 2111111 1111112267777777654 3578888877
Q ss_pred CCEEE--EEec-CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 244 GRTVH--QIPC-RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 244 ~~~~~--~~~~-~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.+-.. .++. +.....+.+ ++.+++.||.++... ...+-+|+.+
T Consensus 226 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~---~~~~~~yd~~ 271 (306)
T 3ii7_A 226 NEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGR---LGHILEYNTE 271 (306)
T ss_dssp TEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSB---CCEEEEEETT
T ss_pred CcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCee---eeeEEEEcCC
Confidence 64322 1221 111222333 677888888765432 1234555544
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.45 E-value=0.26 Score=39.62 Aligned_cols=216 Identities=13% Similarity=0.078 Sum_probs=101.9
Q ss_pred CCCeEEEEe-CC-----CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEeCCCC
Q 022716 31 TGTKLASGS-VD-----QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----KTVRLWDARSG 99 (293)
Q Consensus 31 ~~~~l~s~~-~d-----g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~ 99 (293)
++..++.|+ .+ ..+.+||.......... .++........+.. +..+++.|+.+ ..+.+||..+.
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP--SITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECC--CCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC--CCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCC
Confidence 445667777 33 36777887643211111 11111111112222 24566667654 35888998776
Q ss_pred e---eeeeeeecCc--eEEEEEcCCCCEEEEEeCC-----CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 100 K---CSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 100 ~---~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
+ .......... ...++. .+++.++.|+.+ ..+.++|+.+.+-......+ . .
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----------~--------~ 149 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ----------T--------A 149 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS----------S--------C
T ss_pred CCCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC----------C--------C
Confidence 5 3322111111 112222 256666776643 34667776554322111100 0 0
Q ss_pred CCCEEEEEECCCCCEEEEecCC-----CcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCC-----CcEE
Q 022716 170 NAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFID 237 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~ 237 (293)
.....++.+ +++.++.|+.+ +.+..||+.+..-... +......-..+ ..+++.++.|+.+ ..+.
T Consensus 150 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~ 225 (301)
T 2vpj_A 150 REGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVE 225 (301)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEE
T ss_pred cccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEE--EECCEEEEEeCCCCCcccceEE
Confidence 001112222 56677777654 4688999877643322 11111111222 2367777777764 4588
Q ss_pred EEEcCCCCEEEE--EecCC-CcceeEECCCCCeEEEEEcCCC
Q 022716 238 ISNVHTGRTVHQ--IPCRA-AMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 238 iw~~~~~~~~~~--~~~~~-~i~~~~~sp~~~~la~~~~d~~ 276 (293)
++|..+.+-... ++... ....+.+ ++.+++.||.++.
T Consensus 226 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 226 AYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGN 265 (301)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred EEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCC
Confidence 999887653221 22111 1122223 5678888886643
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.41 E-value=0.33 Score=40.38 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=63.4
Q ss_pred CEEEEEECCCCCEEEEec-----------------CCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEe-cCC
Q 022716 172 GCYCIAIDPMGRYFAVGS-----------------ADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASA-SED 233 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs-----------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~-s~d 233 (293)
....+++.++|+++++.. ..|.|..+|..+. ..+...-...+.++|+||+++|+.+ +..
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~---~~~~~~l~~pNGia~spDg~~lYvadt~~ 242 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV---RVVAEGFDFANGINISPDGKYVYIAELLA 242 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC---EEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE---EEeecCCcccCcceECCCCCEEEEEeCCC
Confidence 355677788888777754 1245655655322 2222222457999999999877555 567
Q ss_pred CcEEEEEcCC-CCE--EEEEecCCCcceeEECC-CCCeEEEEEcC
Q 022716 234 LFIDISNVHT-GRT--VHQIPCRAAMNSVEWNP-KYNLLAYAGDD 274 (293)
Q Consensus 234 ~~i~iw~~~~-~~~--~~~~~~~~~i~~~~~sp-~~~~la~~~~d 274 (293)
+.|..|++.. +.. .+.+........++..+ +|++.+++..+
T Consensus 243 ~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 243 HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESC
T ss_pred CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCC
Confidence 8899999863 432 22333334456788998 59988877533
No 306
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.11 E-value=0.26 Score=40.98 Aligned_cols=147 Identities=17% Similarity=0.165 Sum_probs=75.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC----CCE
Q 022716 109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM----GRY 184 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 184 (293)
..+..++|.|+|+.++++...++|.+++..... ..... + +.. ...........++++|+ +.+
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~-~~~~~-~--~~~----------v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGL-SAPLS-G--VPD----------VWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEE-CCCCB-S--CCC----------CCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCce-eeEec-C--Ccc----------cccCCCCCceeEEECCCCCCCCEE
Confidence 456789999999845555668999988853211 10000 0 000 01122344567888885 444
Q ss_pred EEEecC-------CCcEEEEeCCCC----EEEEE-eeccC------CCeeEEEEccCCCEEEEecC-------------C
Q 022716 185 FAVGSA-------DSLVSLWDISEM----LCVRT-FTKLE------WPVRTISFSHTGDYIASASE-------------D 233 (293)
Q Consensus 185 l~~gs~-------d~~i~iwd~~~~----~~~~~-~~~~~------~~v~~l~~sp~~~~l~s~s~-------------d 233 (293)
.++-+. ...|..|++... ...+. +.... -....|.|.|+|.+.++-+. .
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~ 163 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQ 163 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCT
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCC
Confidence 444332 234555655432 11111 11111 12467999999966555433 2
Q ss_pred CcEEEEEcCCC--------------CEEEEEecCCCcceeEECC-CCCeEEE
Q 022716 234 LFIDISNVHTG--------------RTVHQIPCRAAMNSVEWNP-KYNLLAY 270 (293)
Q Consensus 234 ~~i~iw~~~~~--------------~~~~~~~~~~~i~~~~~sp-~~~~la~ 270 (293)
+.|.-.+.... ..+....++ ....++|+| ++.++++
T Consensus 164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 35555555321 123333322 356799999 5655544
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.09 E-value=0.42 Score=38.43 Aligned_cols=186 Identities=15% Similarity=0.101 Sum_probs=89.0
Q ss_pred CCEEEEEeCC-----CeEEEEeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCCC-----eEEEEEccccceeeee
Q 022716 79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRR 146 (293)
Q Consensus 79 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~-----~i~l~d~~~~~~~~~~ 146 (293)
..+++.|+.+ ..+.+||..+.+.......... ..+++. .+++.++.|+.++ .+..+|+.+..-....
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 4566666654 3478889887764332221111 112222 2566777777543 3556666544321111
Q ss_pred cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC-------CcEEEEeCCCCEEEEE--eeccCCCeeE
Q 022716 147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD-------SLVSLWDISEMLCVRT--FTKLEWPVRT 217 (293)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-------~~i~iwd~~~~~~~~~--~~~~~~~v~~ 217 (293)
..+. ......++. .+++.++.|+.+ ..+.+||+.+..-... +......-..
T Consensus 141 ~~p~------------------~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 200 (302)
T 2xn4_A 141 PMNT------------------RRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV 200 (302)
T ss_dssp CCSS------------------CCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred CCCC------------------cccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE
Confidence 1100 000111122 256666666542 4588999877643321 1111111122
Q ss_pred EEEccCCCEEEEecCC-----CcEEEEEcCCCCEEE--EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEee
Q 022716 218 ISFSHTGDYIASASED-----LFIDISNVHTGRTVH--QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGF 290 (293)
Q Consensus 218 l~~sp~~~~l~s~s~d-----~~i~iw~~~~~~~~~--~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~ 290 (293)
+. .+++.++.|+.+ ..+.++|..+.+-.. .++....-..+. .-++.+++.||.++... ...+-+|+.
T Consensus 201 ~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~---~~~v~~yd~ 274 (302)
T 2xn4_A 201 GV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCN---LASVEYYNP 274 (302)
T ss_dssp EE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSB---CCCEEEEET
T ss_pred EE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcc---cccEEEEcC
Confidence 22 367777887754 358899987764322 122111111122 22677888888765422 233455554
Q ss_pred e
Q 022716 291 E 291 (293)
Q Consensus 291 ~ 291 (293)
+
T Consensus 275 ~ 275 (302)
T 2xn4_A 275 T 275 (302)
T ss_dssp T
T ss_pred C
Confidence 4
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.03 E-value=0.46 Score=38.37 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=54.6
Q ss_pred CCCEEEEecCC-----CcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCC-----CcEEEEEcCCCCEEE
Q 022716 181 MGRYFAVGSAD-----SLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRTVH 248 (293)
Q Consensus 181 ~~~~l~~gs~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~~~~~~ 248 (293)
++++++.|+.+ +.+.+||+.+.+-... +......-..+.+ +++.++.|+.+ ..+.++|+.+.+-..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 56677777654 4588999877643221 1111111222222 67777777754 458899987764322
Q ss_pred --EEecCCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeee
Q 022716 249 --QIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFE 291 (293)
Q Consensus 249 --~~~~~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~ 291 (293)
.++....-.++.. -++.+++.||.++... ...+-+|+.+
T Consensus 246 ~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~---~~~v~~yd~~ 286 (308)
T 1zgk_A 246 VAPMKHRRSALGITV-HQGRIYVLGGYDGHTF---LDSVECYDPD 286 (308)
T ss_dssp CCCCSSCCBSCEEEE-ETTEEEEECCBCSSCB---CCEEEEEETT
T ss_pred CCCCCCCccceEEEE-ECCEEEEEcCcCCCcc---cceEEEEcCC
Confidence 1221111112222 2577888888765322 1234455544
No 309
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.96 E-value=0.41 Score=41.34 Aligned_cols=111 Identities=6% Similarity=0.051 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCC----CCE
Q 022716 109 GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPM----GRY 184 (293)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 184 (293)
..+..++|.|+|+.+++-...+.|.+++..+........+... +....+......++++|+ +.+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~------------~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEI------------VNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC------------CCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcc------------ccccCCCCceeEEEECCCcCcCCEE
Confidence 3567899999998766654445788887543322111000000 000013445667888884 444
Q ss_pred EEEecC------------CCcEEEEeCCCC-------EEEE-Eeec-cCCCeeEEEEccCCCEEEEec
Q 022716 185 FAVGSA------------DSLVSLWDISEM-------LCVR-TFTK-LEWPVRTISFSHTGDYIASAS 231 (293)
Q Consensus 185 l~~gs~------------d~~i~iwd~~~~-------~~~~-~~~~-~~~~v~~l~~sp~~~~l~s~s 231 (293)
.++-+. ...|.-|+.... +.+. .+.. ..-....|+|.|||.+.++.+
T Consensus 95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 444432 124555554321 1111 1211 111368899999998766544
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.95 E-value=0.49 Score=37.98 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=91.3
Q ss_pred CCCeEEEEeCC-----CcEEEeecCCCC---CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEeCC
Q 022716 31 TGTKLASGSVD-----QTARVWHIEPHG---HGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----KTVRLWDAR 97 (293)
Q Consensus 31 ~~~~l~s~~~d-----g~v~iw~~~~~~---~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d-----~~i~vwd~~ 97 (293)
++..++.|+.+ ..+.+||..... ..... .++.....-..+.. +..+++.|+.+ ..+.+||+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~--~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA--PMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC--CCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC--CCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCC
Confidence 56677788765 467888876543 22111 11111111122222 24566666543 357888988
Q ss_pred CCeeeeeeeecCce--EEEEEcCCCCEEEEEeCC-----CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 98 SGKCSQQAELSGEN--INITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 98 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d-----~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
+.+........... .+++. .+++.++.|+.+ ..+..+|+.+..-......+. ..
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~------------------~r 197 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT------------------KR 197 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS------------------CC
T ss_pred CCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc------------------cc
Confidence 77644332222111 11222 256667777654 346667765543221110000 00
Q ss_pred CCEEEEEECCCCCEEEEecCC-----CcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCC-----CcEEE
Q 022716 171 AGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDI 238 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~i 238 (293)
....++.+ ++++++.|+.+ +.+.+||+++.+-... +......-..+ ..+++.++.|+.+ ..+.+
T Consensus 198 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~ 273 (301)
T 2vpj_A 198 SGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIEC 273 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEE
T ss_pred ccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCcccccEEE
Confidence 01112222 56777777654 4689999987653322 11111111222 2367777777755 34678
Q ss_pred EEcCCCC
Q 022716 239 SNVHTGR 245 (293)
Q Consensus 239 w~~~~~~ 245 (293)
+|..+.+
T Consensus 274 yd~~~~~ 280 (301)
T 2vpj_A 274 YDPIIDS 280 (301)
T ss_dssp EETTTTE
T ss_pred EcCCCCe
Confidence 8877654
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.78 E-value=0.41 Score=39.80 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=62.5
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-EEEEee---ccCCCeeEEEEccC---CCEE-EEecC---C----Cc
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-CVRTFT---KLEWPVRTISFSHT---GDYI-ASASE---D----LF 235 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-~~~~~~---~~~~~v~~l~~sp~---~~~l-~s~s~---d----~~ 235 (293)
.....+++.|+++++++ ..++.|++++ .++. .+..+. ........|+|+|+ +..| ++-+. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 44668899999986555 4559999997 3454 222221 12245889999998 4444 44332 3 55
Q ss_pred EEEEEcCCC--C-----EE-EEEecC--CCcceeEECCCCCeEEEEEcCCC
Q 022716 236 IDISNVHTG--R-----TV-HQIPCR--AAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 236 i~iw~~~~~--~-----~~-~~~~~~--~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
|..++.... . .+ ..++.. ..-+.++|.|+|.++++.++..+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~ 157 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD 157 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC
Confidence 777776543 1 11 223311 12467999999988887665443
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.72 E-value=0.74 Score=38.30 Aligned_cols=209 Identities=12% Similarity=0.096 Sum_probs=100.2
Q ss_pred EEEEEECCCCCeEEEEe------------CCCcEEEeecCCCCCCceeEEEeeCC-----cCCeeEEEEcC--CCCCEEE
Q 022716 23 VHSVAWNCTGTKLASGS------------VDQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDP--KHADLIA 83 (293)
Q Consensus 23 v~~l~~s~~~~~l~s~~------------~dg~v~iw~~~~~~~~~~~~~~~~~h-----~~~i~~~~~~~--~~~~~l~ 83 (293)
.-+++..|+|..+.+++ .+|.|.++|.+... .....+.+.+- .-....+.+.+ ++...|+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~-~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKE-PAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSS-CCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCC-CceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566778775444431 68999999986322 22233344331 11234444433 2222233
Q ss_pred EE-eC--CCeEEEEeCCCC--eeeeeeeecC----ceEEEEEcCCCCEEEEEeC---CCeEEEEEccccceeeeecccce
Q 022716 84 TA-SG--DKTVRLWDARSG--KCSQQAELSG----ENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHRRKFGYE 151 (293)
Q Consensus 84 s~-~~--d~~i~vwd~~~~--~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~---d~~i~l~d~~~~~~~~~~~~~~~ 151 (293)
.+ .. +..|.+|++..+ .........+ .+..+++.++|...++... |.....++. ......
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~--------~~~~~~ 202 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEM--------HLGLAW 202 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHH--------HTTCCC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchh--------hccCCc
Confidence 33 22 466777765433 2222212222 2346777788776665431 100000000 000000
Q ss_pred eeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCC-CE--EEEEeeccCCCeeEEEEcc-CCCE
Q 022716 152 VNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISE-ML--CVRTFTKLEWPVRTISFSH-TGDY 226 (293)
Q Consensus 152 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~sp-~~~~ 226 (293)
-.-..+++. +...+..+-....-++++|+++.|..+ +..+.|..|++.. +. ..+.+ ........+++.+ +|++
T Consensus 203 g~vyr~d~~-~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 203 SFVTYYSPN-DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EEEEEECTT-CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred cEEEEEECC-eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence 001112221 111122222334568999999765554 5678899999853 32 22233 3345678899999 5988
Q ss_pred EEEecCC-CcEEEEEcC
Q 022716 227 IASASED-LFIDISNVH 242 (293)
Q Consensus 227 l~s~s~d-~~i~iw~~~ 242 (293)
.+++..+ +.|..++..
T Consensus 281 wva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEESCHHHHHSCCTT
T ss_pred EEEecCCceEEEEECCC
Confidence 7766534 334444443
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.69 E-value=0.75 Score=38.15 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=63.0
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEee---ccCCCeeEEEEccC---CCEEE-EecCC-----CcE
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFT---KLEWPVRTISFSHT---GDYIA-SASED-----LFI 236 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~---~~~~~v~~l~~sp~---~~~l~-s~s~d-----~~i 236 (293)
.....+++.|+++++++ ..++.|.+++ .+.. +..+. .-......|+|+|+ +..|. +-... ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34568999999996655 4569999998 4432 11121 11346889999998 55443 33322 567
Q ss_pred EEEEcCCCC-----EE-EEEec--C--CCcceeEECCCCCeEEEEEcCCC
Q 022716 237 DISNVHTGR-----TV-HQIPC--R--AAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 237 ~iw~~~~~~-----~~-~~~~~--~--~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
..++...+. .+ ..++. . .....++|.|+|.++++.++..+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~ 157 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE 157 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC
Confidence 777766432 11 22331 1 12468999999988777665443
No 314
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.67 E-value=0.72 Score=37.84 Aligned_cols=135 Identities=12% Similarity=0.179 Sum_probs=85.0
Q ss_pred CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee
Q 022716 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 209 (293)
Q Consensus 130 ~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~ 209 (293)
.++.+.|+.+.....++....+ +.-++|..+.+|.-. ..++.+||+++..+++.+.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad-----------------------sAIMnP~~~ViALra-g~~LQiFnletK~klks~~ 104 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD-----------------------SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT 104 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS-----------------------EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE
T ss_pred CEEEEEECCCCCCccccccccc-----------------------eeeeCCCccEEEEec-CCeEEEechHHhhhhccee
Confidence 3788889887654443332211 344688888877775 6789999999998888764
Q ss_pred ccCCCeeEEEEccCCCE-EEEecCCCcEEEEEcCCC-CEEEEEecCC-----CcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 210 KLEWPVRTISFSHTGDY-IASASEDLFIDISNVHTG-RTVHQIPCRA-----AMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 210 ~~~~~v~~l~~sp~~~~-l~s~s~d~~i~iw~~~~~-~~~~~~~~~~-----~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
- ..+|.-=.|-.+... |+| +..|+-|++... ...+.+..+. .|.+-.-+++.+.++..|-...- -+-.
T Consensus 105 ~-~e~VvfWkWis~~~L~lVT---~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~-~~v~ 179 (365)
T 2xzh_A 105 M-TDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQ-NRVV 179 (365)
T ss_dssp C-SSCEEEEEECSSSEEEEEE---SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEET-TEEE
T ss_pred c-CCccEEEEecCCCeEEEEc---CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccC-Cccc
Confidence 4 346666666443332 343 345899998753 3344443322 34455668888887777752110 0334
Q ss_pred ceEEEEeeecC
Q 022716 283 GVFRIYGFENA 293 (293)
Q Consensus 283 ~~~~~~~~~~~ 293 (293)
|.|.+|++|+.
T Consensus 180 G~mQLYS~er~ 190 (365)
T 2xzh_A 180 GAMQLYSVDRK 190 (365)
T ss_dssp EEEEEEETTTT
T ss_pred eeEEEEeeccc
Confidence 99999999863
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.64 E-value=0.39 Score=40.83 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=73.4
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCC---CC-----cee--EEEeeC----CcCCeeEEEEcCCCC--CEEEEE
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---HG-----KVK--DIELRG----HADSVDQLCWDPKHA--DLIATA 85 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~---~~-----~~~--~~~~~~----h~~~i~~~~~~~~~~--~~l~s~ 85 (293)
.|..+..||+|++||..+ +..|.|-.+.... .+ ... ...+.. ...+|..+.|||-+. ..|+.-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577799999999998776 4678887775211 00 011 112211 246799999999653 478889
Q ss_pred eCCCeEEEEeCCCCeeee-eee-----ec-----CceEEEEEcCCCCEEEEEe--CCCeEEE
Q 022716 86 SGDKTVRLWDARSGKCSQ-QAE-----LS-----GENINITYKPDGTHIAVGN--RDDELTI 134 (293)
Q Consensus 86 ~~d~~i~vwd~~~~~~~~-~~~-----~~-----~~~~~~~~~~~~~~l~~~~--~d~~i~l 134 (293)
..|+.|++||+....... .+. +. ..+.+++|.+++-.|.+.+ +.|-|.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 999999999997532111 111 11 3456789999888887755 6777654
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.57 E-value=0.71 Score=38.24 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=68.8
Q ss_pred ecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEee----ccCCCeeEEEEccC---CCEEEE---ecCCC
Q 022716 167 TTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFT----KLEWPVRTISFSHT---GDYIAS---ASEDL 234 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~----~~~~~v~~l~~sp~---~~~l~s---~s~d~ 234 (293)
+.+-.....+++.|+++.+++--..|.|++++...+.. +..+. ........|+|+|+ +.+|.. ...+.
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~ 107 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDN 107 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCC
Confidence 34445567899999999887776689999998765543 22221 12346789999996 344432 23445
Q ss_pred cEEEEEcCCC----------CEE-EEEec--CCCcceeEECCCCCeEEEEEcCCCC
Q 022716 235 FIDISNVHTG----------RTV-HQIPC--RAAMNSVEWNPKYNLLAYAGDDKNK 277 (293)
Q Consensus 235 ~i~iw~~~~~----------~~~-~~~~~--~~~i~~~~~sp~~~~la~~~~d~~~ 277 (293)
.|.-+....+ +.+ ..++. ...-..|.|.|+|.++++.|+..+.
T Consensus 108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~ 163 (347)
T 3das_A 108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT 163 (347)
T ss_dssp EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG
T ss_pred EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC
Confidence 5655554431 112 23332 1134679999999988888765544
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.48 E-value=0.02 Score=44.09 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=60.3
Q ss_pred CEEEEEECCCCCEEEEecCCCcEEEEeCCCC---------EEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 172 GCYCIAIDPMGRYFAVGSADSLVSLWDISEM---------LCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
.+..++|+|++.+.++ .+|.+.-.+..+. ..+... +-. .-.++.|.|+|.+-++ .|+.|+-++..
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-GWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-CGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-ccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 3457999999998888 6777666665331 111100 111 2478999999987777 66999888764
Q ss_pred CCCEE------EEEecC--CCcceeEECCCCCeEEEE
Q 022716 243 TGRTV------HQIPCR--AAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 243 ~~~~~------~~~~~~--~~i~~~~~sp~~~~la~~ 271 (293)
+.... ..+... ..+..|.|.|+|.+.|..
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 32110 111111 247889999999999998
No 318
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.28 E-value=1.1 Score=37.23 Aligned_cols=109 Identities=11% Similarity=0.012 Sum_probs=60.9
Q ss_pred ecCccccEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEE-e----eCCcCCeeEEEEcCC---CCCEEEEE--
Q 022716 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-L----RGHADSVDQLCWDPK---HADLIATA-- 85 (293)
Q Consensus 16 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~----~~h~~~i~~~~~~~~---~~~~l~s~-- 85 (293)
+-..-.....++|.|+|+.+++--..|.|++++.+.. ....+. + .........++++|+ +..++++-
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g---~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG---RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC---cEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3333457789999999997777666899998865321 111111 1 112345788999985 33344432
Q ss_pred eCCCeEEEEeCCCC-----e---eeee---eeecC--ceEEEEEcCCCCEEEEEe
Q 022716 86 SGDKTVRLWDARSG-----K---CSQQ---AELSG--ENINITYKPDGTHIAVGN 127 (293)
Q Consensus 86 ~~d~~i~vwd~~~~-----~---~~~~---~~~~~--~~~~~~~~~~~~~l~~~~ 127 (293)
..+..|.-|....+ . .... +.... ....++|.|||.+.++.+
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 23455655655431 1 1111 11111 123589999998776654
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.19 E-value=0.95 Score=36.26 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=87.7
Q ss_pred CCCeEEEEeCCC-----cEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCC-----eEEEEeCCCCe
Q 022716 31 TGTKLASGSVDQ-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-----TVRLWDARSGK 100 (293)
Q Consensus 31 ~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~ 100 (293)
++..++.|+.++ .+.+||.......... .++.....-..+.+ +..+++.|+.++ .+.+||+.+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA--NMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC--CCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCC--CCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 566777887653 5677776543211111 01111111112222 235666676553 46778887765
Q ss_pred eeeeeeecCce--EEEEEcCCCCEEEEEeCC-------CeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCC
Q 022716 101 CSQQAELSGEN--INITYKPDGTHIAVGNRD-------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNA 171 (293)
Q Consensus 101 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d-------~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 171 (293)
........... .+++. .+++.++.|+.+ ..+..+|+.+..-......+ ....
T Consensus 136 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p------------------~~r~ 196 (302)
T 2xn4_A 136 WFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS------------------TRRS 196 (302)
T ss_dssp EEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS------------------SCCB
T ss_pred EeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc------------------cccc
Confidence 43322111111 12222 255666666532 34666776554321111000 0000
Q ss_pred CEEEEEECCCCCEEEEecCC-----CcEEEEeCCCCEEEEEeeccCC-CeeEEEEccCCCEEEEecCCC-----cEEEEE
Q 022716 172 GCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEMLCVRTFTKLEW-PVRTISFSHTGDYIASASEDL-----FIDISN 240 (293)
Q Consensus 172 ~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~s~s~d~-----~i~iw~ 240 (293)
...++.+ ++++++.|+.+ +.+.+||+.+.+-.. +..... .-..-+...+++.++.|+.++ .+.+||
T Consensus 197 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd 273 (302)
T 2xn4_A 197 GAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ-VADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYN 273 (302)
T ss_dssp SCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred cccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEee-CCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEc
Confidence 1112222 56777777654 468899988764332 221111 111111223677777777553 377888
Q ss_pred cCCCC
Q 022716 241 VHTGR 245 (293)
Q Consensus 241 ~~~~~ 245 (293)
..+.+
T Consensus 274 ~~~~~ 278 (302)
T 2xn4_A 274 PTTDK 278 (302)
T ss_dssp TTTTE
T ss_pred CCCCe
Confidence 77654
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.08 E-value=1.4 Score=37.66 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=84.5
Q ss_pred CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 129 DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 129 d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
+.++.+.|+.+.....++....+ +.-++|..+.+|.-. ..++.+||++...+++.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad-----------------------sAIMnP~~~iiALra-g~~lQiFnle~K~klks~ 102 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD-----------------------SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH 102 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS-----------------------EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCCCCcceecccccc-----------------------eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcce
Confidence 34788889887654443332211 345678888777765 678999999999888876
Q ss_pred eccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCC-CEEEEEecCC-----CcceeEECCCCCeEEEEEcCCCCCCCCc
Q 022716 209 TKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTG-RTVHQIPCRA-----AMNSVEWNPKYNLLAYAGDDKNKYQADE 282 (293)
Q Consensus 209 ~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~-~~~~~~~~~~-----~i~~~~~sp~~~~la~~~~d~~~~~~~~ 282 (293)
.-. .+|.-=.|-.+. .|+.. .+..|+-|++... ...+.+..+. .|.+-.-+++.+.++..|-...- -+-.
T Consensus 103 ~~~-e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~-~~v~ 178 (494)
T 1bpo_A 103 TMT-DDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQ-NRVV 178 (494)
T ss_dssp ECS-SCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEET-TEEE
T ss_pred ecC-CCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccC-Cccc
Confidence 543 355555554333 23222 2456899998653 3344443322 34455668888888777642110 1335
Q ss_pred ceEEEEeeec
Q 022716 283 GVFRIYGFEN 292 (293)
Q Consensus 283 ~~~~~~~~~~ 292 (293)
|.|.+|++|+
T Consensus 179 G~mQLYS~er 188 (494)
T 1bpo_A 179 GAMQLYSVDR 188 (494)
T ss_dssp EEEEEEESTT
T ss_pred ceEEEeeccc
Confidence 9999999986
No 321
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.02 E-value=1.9 Score=38.87 Aligned_cols=199 Identities=8% Similarity=-0.030 Sum_probs=114.2
Q ss_pred ccEEEEEECCCCCeEEEEe-CCCcEEEeecCCCCCCceeEEEeeC------CcCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 022716 21 KKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRG------HADSVDQLCWDPKHADLIATASGDKTVRL 93 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~-~dg~v~iw~~~~~~~~~~~~~~~~~------h~~~i~~~~~~~~~~~~l~s~~~d~~i~v 93 (293)
..+..++|++.+..|.-+. ..+.|+.++.+... . ..+ +.. .......+++...+..++++-+..+.|.+
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~--~-~~v-~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v 415 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ--G-FTV-VVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINV 415 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--C-EEE-EC--------CCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCC--c-eEE-EEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEE
Confidence 4688999998777665544 46778887765321 1 111 111 22346778887766667778778889999
Q ss_pred EeCCCCeeeeeee--ecCceEEEEEcC-CCCEEEEEeCCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEec
Q 022716 94 WDARSGKCSQQAE--LSGENINITYKP-DGTHIAVGNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (293)
Q Consensus 94 wd~~~~~~~~~~~--~~~~~~~~~~~~-~~~~l~~~~~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 168 (293)
.+++.. ....+. .-..+..+++.| .|..+++-.... .|...++..... ..++..
T Consensus 416 ~~~~G~-~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~--------------------~~l~~~ 474 (628)
T 4a0p_A 416 TRLDGR-SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER--------------------EVLFFS 474 (628)
T ss_dssp EETTSC-EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC--------------------EEEECS
T ss_pred EECCCC-eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc--------------------EEEEec
Confidence 988643 333222 234577899988 454444433222 344444433211 111122
Q ss_pred CCCCEEEEEECCCCCEEEEe-cCCCcEEEEeCCCCEEEEEee-ccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCCE
Q 022716 169 GNAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTFT-KLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGRT 246 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~ 246 (293)
.-.....|+++++...|..+ +..+.|..+++.... .+.+. ..-....+|+... +....+-.....|...|..+|+.
T Consensus 475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence 22345678888875555444 456788888885432 23332 2223456777644 55556666677788888776653
No 322
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.92 E-value=2 Score=38.62 Aligned_cols=200 Identities=8% Similarity=-0.052 Sum_probs=107.6
Q ss_pred ccEEEEEECCCCCeEE-EEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC
Q 022716 21 KKVHSVAWNCTGTKLA-SGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~-s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 99 (293)
..+..++|++.+..|. +-...+.|+.++++... . .. ...........+++.+.+++++++-+..+.|.+.+++..
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--~-~~-v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--S-QF-VVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--C-EE-EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc--c-EE-EEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 3577899998665555 44457888888876321 1 11 122222345677776655667777777889999988754
Q ss_pred eeeeeee-ecCceEEEEEcCCCCEEEEEeC--CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEE
Q 022716 100 KCSQQAE-LSGENINITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCI 176 (293)
Q Consensus 100 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 176 (293)
....... .-..+..+++.|....|..... ...|...++..... ..+....-.....|
T Consensus 425 ~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~--------------------~~l~~~~l~~P~Gl 484 (619)
T 3s94_A 425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR--------------------VVLVNTSLGWPNGL 484 (619)
T ss_dssp SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--------------------EEEECSSCSCEEEE
T ss_pred eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc--------------------EEEEeCCCCCCeee
Confidence 3222211 1245778899886444433332 24555445433211 11111222345678
Q ss_pred EECCCCCEE-EEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcCCCC
Q 022716 177 AIDPMGRYF-AVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVHTGR 245 (293)
Q Consensus 177 ~~~~~~~~l-~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~ 245 (293)
++++++..| ++=+..+.|..+++........+...-.....|+...+ ....+-...+.|...+..++.
T Consensus 485 alD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 485 ALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred EEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 888755444 44455677888887543221111111122334555433 344454556667777776663
No 323
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.65 E-value=1.4 Score=35.61 Aligned_cols=146 Identities=10% Similarity=0.029 Sum_probs=69.1
Q ss_pred CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEe--CC--CeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--RD--DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d--~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
..|+..++..++..... ... ...++++++.++-.. .+ ..|...++......+...
T Consensus 88 ~~Iy~i~~dg~~~~~l~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~----------------- 146 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLD--PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN----------------- 146 (302)
T ss_dssp EEEEEEETTSCCCEEEE--CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES-----------------
T ss_pred CeEEEEeCCCCcceEee--cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC-----------------
Confidence 35677777665432211 111 236677888877665 23 345455554322211111
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecC-CCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEecCC--CcEEEEEc
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASASED--LFIDISNV 241 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~-d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d--~~i~iw~~ 241 (293)
+.. .+++|+++.|.-.+. ...|...++..+.....+. .+. ...+.|++.+|+-...+ ..|..-++
T Consensus 147 ----~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~l 214 (302)
T 3s25_A 147 ----HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNI 214 (302)
T ss_dssp ----SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCE-EEEEEEETTEEEEEEGGGTTEEEEECS
T ss_pred ----CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCc-cceeeecCCEEEEEEcCCCcEEEEEEC
Confidence 100 223455555543333 5667777776654332222 222 23456888887654432 34555555
Q ss_pred CCCCEEEEEecCCCcceeEECCCCCeEEEE
Q 022716 242 HTGRTVHQIPCRAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 242 ~~~~~~~~~~~~~~i~~~~~sp~~~~la~~ 271 (293)
..+. ...+. ...+ ..|+|++.+|..+
T Consensus 215 dG~~-~~~Lt-~~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 215 NNPN-PVVLT-EANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp SSCC-CEECS-CSCE--EEEEEETTEEEEE
T ss_pred CCCC-eEEEe-CCCc--ceEEECCCEEEEE
Confidence 4433 22221 1222 2356666666544
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.53 E-value=1.8 Score=37.30 Aligned_cols=107 Identities=11% Similarity=0.078 Sum_probs=63.5
Q ss_pred CCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE--EEEeec------cCCCeeEEEEccC---CCEE-EEecC----
Q 022716 169 GNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC--VRTFTK------LEWPVRTISFSHT---GDYI-ASASE---- 232 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~--~~~~~~------~~~~v~~l~~sp~---~~~l-~s~s~---- 232 (293)
.-.....+++.|+|+++++-...+.|++++..++.. +..+.. ....+..|+|+|+ +.+| ++-+.
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 344567899999999877765555788887654432 222221 1345678999995 4444 33322
Q ss_pred --------CCcEEEEEcCCC--C-----EE-EEEecC--CCcceeEECCCCCeEEEEEcCC
Q 022716 233 --------DLFIDISNVHTG--R-----TV-HQIPCR--AAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 233 --------d~~i~iw~~~~~--~-----~~-~~~~~~--~~i~~~~~sp~~~~la~~~~d~ 275 (293)
...|..++.... + .+ ..++.. ..-..|.|.|+|.++++.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~ 165 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQG 165 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTT
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCC
Confidence 234555554322 1 11 123221 2357899999999888877654
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.43 E-value=1.6 Score=35.22 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=48.1
Q ss_pred CCCEEEEecC------CCcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEecCCC-----cEEEEEcCCCCEEE
Q 022716 181 MGRYFAVGSA------DSLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASEDL-----FIDISNVHTGRTVH 248 (293)
Q Consensus 181 ~~~~l~~gs~------d~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~d~-----~i~iw~~~~~~~~~ 248 (293)
+++.++.|+. -+.+.+||..+.+-.. +.....+ ....+..-+++.++.|+.++ .+.++|..+.+-..
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 5667777765 2468999988764322 2111111 11111223677777777543 47788887764322
Q ss_pred E--EecCCC-cceeEECCCCCeEEEEEcCC
Q 022716 249 Q--IPCRAA-MNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 249 ~--~~~~~~-i~~~~~sp~~~~la~~~~d~ 275 (293)
. ++.... ...+.+ ++.+++.||.+.
T Consensus 227 ~~~~p~~r~~~~~~~~--~~~l~v~GG~~~ 254 (315)
T 4asc_A 227 FEAFPQERSSLSLVSL--VGTLYAIGGFAT 254 (315)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEEEEEEE
T ss_pred CCCCCCcccceeEEEE--CCEEEEECCccc
Confidence 1 221111 112223 567888888753
No 326
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.41 E-value=0.87 Score=35.06 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=74.9
Q ss_pred CCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeeee------ee---eecCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 022716 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ------QA---ELSGENINITYKPDGTHIAVGNRDDELTILDV 137 (293)
Q Consensus 67 ~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~------~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~ 137 (293)
..+.+++|+|+ .. |+.. .++.+.-.+..+..... .+ ..+ ....+.|.|+|.+.++ .|+.|.-++.
T Consensus 41 ~~~~~laf~P~-G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPG-GE-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTT-SC-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCC-cc-EEEE-eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 46789999995 44 4555 66766655543321111 11 011 1357889999987777 5698877764
Q ss_pred cccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE------EEEEeecc
Q 022716 138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML------CVRTFTKL 211 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~------~~~~~~~~ 211 (293)
.+..... |-..+ ..+-..+-..+..|.++|+|.+.++. |+.++-....... ....+..-
T Consensus 115 P~~~~~~------------Wl~~a-~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~ 179 (236)
T 1tl2_A 115 PQSDTDN------------WIARA-TEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG 179 (236)
T ss_dssp CCSTTCC------------HHHHS-EEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS
T ss_pred CcCCCCc------------eeccc-cEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC
Confidence 3211100 10000 00111122345688999999998888 6664332221110 00111111
Q ss_pred C-CCeeEEEEccCCCEEEEecCCCc
Q 022716 212 E-WPVRTISFSHTGDYIASASEDLF 235 (293)
Q Consensus 212 ~-~~v~~l~~sp~~~~l~s~s~d~~ 235 (293)
. ..-+.+.|.|++...+.. ++.
T Consensus 180 g~~~yr~l~f~~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 180 GWDTFKFLFFSSVGTLFGVQ--GGK 202 (236)
T ss_dssp SGGGEEEEEECTTSCEEEEE--TTE
T ss_pred CcceEEEEEECCCCcEEEEe--CCe
Confidence 1 123446688888766555 553
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.26 E-value=1.7 Score=34.83 Aligned_cols=172 Identities=10% Similarity=0.049 Sum_probs=83.5
Q ss_pred EEEEEeC--CCeEEEEeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCC----CeEEEEEccccceeeeeccccee
Q 022716 81 LIATASG--DKTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD----DELTILDVRKFKPIHRRKFGYEV 152 (293)
Q Consensus 81 ~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d----~~i~l~d~~~~~~~~~~~~~~~~ 152 (293)
+++.|+. ...+.+||..+.+....-..... ..+++ ..+++.++.|+.+ ..+..+|+.+..-......+.
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~-- 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV-FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT-- 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE-EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS--
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE-EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc--
Confidence 4445554 35678889887764432211111 11222 2356666777654 556777776543221111100
Q ss_pred eeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC------CcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCC
Q 022716 153 NEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTG 224 (293)
Q Consensus 153 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d------~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~ 224 (293)
......++.+ +++.++.|+.+ ..+.+||..+..-... +......-..+ ..++
T Consensus 91 ----------------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~ 150 (306)
T 3ii7_A 91 ----------------PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV--EANG 150 (306)
T ss_dssp ----------------CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETT
T ss_pred ----------------cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE--EECC
Confidence 0001112222 56677777755 5689999887643322 11111111222 2366
Q ss_pred CEEEEecC---------CCcEEEEEcCCCCEEEE--EecCCCcceeEECCCCCeEEEEEcCCC
Q 022716 225 DYIASASE---------DLFIDISNVHTGRTVHQ--IPCRAAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 225 ~~l~s~s~---------d~~i~iw~~~~~~~~~~--~~~~~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
+..+.|+. -..+.++|..+.+-... ++....-.++... ++.+++.||.+..
T Consensus 151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~ 212 (306)
T 3ii7_A 151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGL 212 (306)
T ss_dssp EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETT
T ss_pred EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCC
Confidence 77777763 34478899887643221 2211111122222 5678888886654
No 328
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.99 E-value=1.8 Score=39.54 Aligned_cols=225 Identities=10% Similarity=0.059 Sum_probs=106.1
Q ss_pred CCCCeEEEEeCC----CcEEEeecCCCCCCceeEEEee-----CCcC-CeeEEEEcCCCCCEEEEEeCCC------eEEE
Q 022716 30 CTGTKLASGSVD----QTARVWHIEPHGHGKVKDIELR-----GHAD-SVDQLCWDPKHADLIATASGDK------TVRL 93 (293)
Q Consensus 30 ~~~~~l~s~~~d----g~v~iw~~~~~~~~~~~~~~~~-----~h~~-~i~~~~~~~~~~~~l~s~~~d~------~i~v 93 (293)
.++..++.||.+ ..+.+||...+.... +... .... .-.+++..+.++.+++.||.++ .+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~---~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDM---KNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEE---EECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEE---eccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence 456777888764 457777776432211 1101 0111 1112222221345666776532 4678
Q ss_pred EeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCCC--eEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 94 WDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 94 wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~--~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
||..+.+....-..... ..+++...+++.++.|+.++ .+.+||+.+..-......+.. | ..
T Consensus 473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~-------p--------~~ 537 (695)
T 2zwa_A 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEF-------F--------QN 537 (695)
T ss_dssp EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGG-------G--------GS
T ss_pred EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCC-------C--------Cc
Confidence 88887654332211111 11233334788888887654 577888766442211110000 0 00
Q ss_pred CCCEEEEEECCC-CCEEEEecC--C-----CcEEEEeCCCCE--------EEEEee-ccCCCeeEEEEccCCCEEEEecC
Q 022716 170 NAGCYCIAIDPM-GRYFAVGSA--D-----SLVSLWDISEML--------CVRTFT-KLEWPVRTISFSHTGDYIASASE 232 (293)
Q Consensus 170 ~~~~~~~~~~~~-~~~l~~gs~--d-----~~i~iwd~~~~~--------~~~~~~-~~~~~v~~l~~sp~~~~l~s~s~ 232 (293)
.....++.+... ++.++.|+. + +.+..||+.+.. .+.... .....- ++....+++.++.|+.
T Consensus 538 r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 538 SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGT 616 (695)
T ss_dssp CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCB
T ss_pred ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCc
Confidence 001112333444 667777765 2 458899987654 222211 111111 2223333777777774
Q ss_pred --------CCcEEEEEcCCCCEEEEEecCCCc----------ceeEECCCCCeEEEEEcC
Q 022716 233 --------DLFIDISNVHTGRTVHQIPCRAAM----------NSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 233 --------d~~i~iw~~~~~~~~~~~~~~~~i----------~~~~~sp~~~~la~~~~d 274 (293)
...+.++|..+.+-. .+...... .++..-+++.+++.||..
T Consensus 617 ~~~~~~~~~~~v~~yd~~t~~W~-~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 617 SPSGLFDRTNSIISLDPLSETLT-SIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp CSSCCCCTTTSEEEEETTTTEEE-ECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred cCCCCCCCCCeEEEEECCCCeEE-EeeccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 345889998876533 22211111 223334556788888753
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.82 E-value=0.52 Score=41.54 Aligned_cols=137 Identities=14% Similarity=0.198 Sum_probs=80.3
Q ss_pred EEEEeCCC----C-eeeeeeeecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716 91 VRLWDARS----G-KCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 91 i~vwd~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
+.+.|.+. + .....+.....+..+..+|||+++++++. +.++.++|.++.......+. ..+.....
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~--------~~~~~~~~ 371 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL--------ADPRDVIV 371 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC--------SCGGGGEE
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc--------cCcccceE
Confidence 55666544 1 22333445556667899999999988874 78999999875322110000 00000000
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCC----------EEEEEeeccCCCeeEEEE------ccCCCEEE
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM----------LCVRTFTKLEWPVRTISF------SHTGDYIA 228 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~------sp~~~~l~ 228 (293)
.-....-...-.+|+++|....+---|..|.-|++... ..+..+.-|- .+-.+.- .|+|++|+
T Consensus 372 ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y-qpGH~~~~~get~~~dGk~lv 450 (638)
T 3sbq_A 372 GEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY-QPGHLHASLCETNEADGKWLV 450 (638)
T ss_dssp ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS-CEEEEEETTTTSTTCCSCEEE
T ss_pred eeccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc-CCcccccCCCccCCCCccEEE
Confidence 00011223456788899977778888999999998642 2333443332 3333333 57899998
Q ss_pred Ee---cCCCcE
Q 022716 229 SA---SEDLFI 236 (293)
Q Consensus 229 s~---s~d~~i 236 (293)
+. |.|.++
T Consensus 451 ~lnK~skdrfl 461 (638)
T 3sbq_A 451 ALSKFSKDRFL 461 (638)
T ss_dssp EEESCCTTSSC
T ss_pred EecccccccCc
Confidence 87 567776
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.69 E-value=2.2 Score=34.22 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=69.7
Q ss_pred CCEEEEEeCC-----CeEEEEeCCCCeeeeeeeecCc--eEEEEEcCCCCEEEEEeCC-----CeEEEEEccccceeeee
Q 022716 79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHRR 146 (293)
Q Consensus 79 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~l~d~~~~~~~~~~ 146 (293)
..+++.|+.+ ..+.+||..+.+.......... ..+++. -+++.++.|+.+ ..+..+|+.+..-....
T Consensus 122 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 200 (308)
T 1zgk_A 122 GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT 200 (308)
T ss_dssp TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC
T ss_pred CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC
Confidence 3466666543 3577888877654332221111 112222 256666776654 34666776554321111
Q ss_pred cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC-----CcEEEEeCCCCEEEEEeeccC---CCeeEE
Q 022716 147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEMLCVRTFTKLE---WPVRTI 218 (293)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d-----~~i~iwd~~~~~~~~~~~~~~---~~v~~l 218 (293)
..+ .......++.+ ++++++.|+.+ ..+.+||+.+.+-.. +.... ..-..+
T Consensus 201 ~~p------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~ 259 (308)
T 1zgk_A 201 AMN------------------TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF-VAPMKHRRSALGIT 259 (308)
T ss_dssp CCS------------------SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEE
T ss_pred CCC------------------CccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE-CCCCCCCccceEEE
Confidence 000 00011112222 56777777654 568999988764332 21111 111222
Q ss_pred EEccCCCEEEEecCC-----CcEEEEEcCCCC
Q 022716 219 SFSHTGDYIASASED-----LFIDISNVHTGR 245 (293)
Q Consensus 219 ~~sp~~~~l~s~s~d-----~~i~iw~~~~~~ 245 (293)
. -+++.++.|+.+ ..+.++|..+.+
T Consensus 260 ~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 260 V--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp E--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred E--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 2 367777777754 346677776653
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.65 E-value=2.2 Score=35.07 Aligned_cols=54 Identities=4% Similarity=-0.122 Sum_probs=27.8
Q ss_pred cEEEEeCCC--CEEEEEeeccCCCeeEEEEccCCCEEEEecCCC------cEEEEEcCCCCEEE
Q 022716 193 LVSLWDISE--MLCVRTFTKLEWPVRTISFSHTGDYIASASEDL------FIDISNVHTGRTVH 248 (293)
Q Consensus 193 ~i~iwd~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~------~i~iw~~~~~~~~~ 248 (293)
.+.+||+.+ ...+..+......-.+ ...+++.++.|+.+. .+.+.++.+++.+.
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 577898865 3444333322222222 334777888887543 23445776666543
No 332
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.95 Score=37.35 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=67.9
Q ss_pred CEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEe-cCCCcEEEEeC
Q 022716 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVG-SADSLVSLWDI 199 (293)
Q Consensus 121 ~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-s~d~~i~iwd~ 199 (293)
..+++++.||.+.-+|.++++..-....+. ....+....... ..++..++.. +.||.|..++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~---------~~p~~~~~~~~~-------~~~~~~~vv~p~~dG~l~a~~~ 74 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN---------FQPLIEIQEPSR-------LETYETLIIEPFGDGNIYYFNA 74 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG---------SCCSEECCCSCT-------TTSSEEEEECCSTTTEEEEEET
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc---------cCCcEEecCCcc-------ccCCcEEEEEECCCCEEEEEEC
Confidence 367888999999999987766443322210 000000000000 0123334443 68999999999
Q ss_pred CCCEEEEEeecc----CCCeeE----EEE----ccCCCEEEEecCCCcEEEEEcCCCCEEEEEecC
Q 022716 200 SEMLCVRTFTKL----EWPVRT----ISF----SHTGDYIASASEDLFIDISNVHTGRTVHQIPCR 253 (293)
Q Consensus 200 ~~~~~~~~~~~~----~~~v~~----l~~----sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~ 253 (293)
.++...-.+... ..|+.. +.. +..+..+++|+.++.+.-.|..+|+.+..+...
T Consensus 75 ~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 75 HQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred CCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 887544333211 112221 000 014568899999999999999999999887654
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.04 E-value=5.2 Score=36.53 Aligned_cols=194 Identities=12% Similarity=0.116 Sum_probs=96.2
Q ss_pred CCEEEEEeCC----CeEEEEeCCCCeeeeee-e-----ecCc--eEEEEEcC-CCCEEEEEeCCC------eEEEEEccc
Q 022716 79 ADLIATASGD----KTVRLWDARSGKCSQQA-E-----LSGE--NINITYKP-DGTHIAVGNRDD------ELTILDVRK 139 (293)
Q Consensus 79 ~~~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~~~~--~~~~~~~~-~~~~l~~~~~d~------~i~l~d~~~ 139 (293)
..+++.||.+ ..+.+||..+.+..... . .... ..+++..+ +++.++.|+.++ .+.++|+.+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 4567777653 35778888776543322 1 1111 11233333 677777777432 355666655
Q ss_pred cceeeeecccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCC--cEEEEeCCCCEEEEEe-----eccC
Q 022716 140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADS--LVSLWDISEMLCVRTF-----TKLE 212 (293)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~--~i~iwd~~~~~~~~~~-----~~~~ 212 (293)
.. |..-..+ ....... +.+.-.++..++.|+.++ .+.+||..+..-...- ....
T Consensus 478 ~~---------------W~~~~~~---p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r 538 (695)
T 2zwa_A 478 RE---------------WSMIKSL---SHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS 538 (695)
T ss_dssp TE---------------EEECCCC---SBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC
T ss_pred Cc---------------EEECCCC---CCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc
Confidence 32 2111100 0000011 222224778888887654 6999999876533221 1112
Q ss_pred CCeeEEEEccC-CCEEEEecC--C-----CcEEEEEcCCCCE-----EEEEec---CCCc-ceeEECCCCCeEEEEEcCC
Q 022716 213 WPVRTISFSHT-GDYIASASE--D-----LFIDISNVHTGRT-----VHQIPC---RAAM-NSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 213 ~~v~~l~~sp~-~~~l~s~s~--d-----~~i~iw~~~~~~~-----~~~~~~---~~~i-~~~~~sp~~~~la~~~~d~ 275 (293)
..-.++.+..+ ++.++.|+. + ..+.+||+.+..- ...+.. .... .++....++.+++.||.+.
T Consensus 539 ~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~ 618 (695)
T 2zwa_A 539 LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSP 618 (695)
T ss_dssp CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCS
T ss_pred cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccC
Confidence 22233555555 667777765 2 3478899887761 222211 1111 1222223377888888654
Q ss_pred CCCCCCcceEEEEeee
Q 022716 276 NKYQADEGVFRIYGFE 291 (293)
Q Consensus 276 ~~~~~~~~~~~~~~~~ 291 (293)
.........+-+|+.+
T Consensus 619 ~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 619 SGLFDRTNSIISLDPL 634 (695)
T ss_dssp SCCCCTTTSEEEEETT
T ss_pred CCCCCCCCeEEEEECC
Confidence 3321223445566554
No 334
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=91.77 E-value=10 Score=36.94 Aligned_cols=224 Identities=13% Similarity=0.141 Sum_probs=114.8
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCC-----CCEEEEEeC-CCeEEEEe
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-----ADLIATASG-DKTVRLWD 95 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~-----~~~l~s~~~-d~~i~vwd 95 (293)
.|...+.+ +.+++.++ ++.+.+++++.. ......-..-...|.++++.|.. +.+++.|.+ |+++++++
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~---~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s 588 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQ---ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK 588 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETT---EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCC---ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence 35554443 34666664 577777777642 11211111224568999886532 367888886 99999999
Q ss_pred CCCCeeeeeeeecC--ceEEEEEc--CCCCEEEEEeCCCeEEEEEcc--ccceeee--ecccceeeeeEEecCCCEEEEe
Q 022716 96 ARSGKCSQQAELSG--ENINITYK--PDGTHIAVGNRDDELTILDVR--KFKPIHR--RKFGYEVNEIAWNMTGEMFFLT 167 (293)
Q Consensus 96 ~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l~~~~~d~~i~l~d~~--~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~ 167 (293)
+..-+......... .+.++.+. ....+|.+|..||.+.-+.+. ++..... ...|.
T Consensus 589 L~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~----------------- 651 (1158)
T 3ei3_A 589 LPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT----------------- 651 (1158)
T ss_dssp TTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS-----------------
T ss_pred CCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC-----------------
Confidence 98766555444433 34444332 234578899999987665543 2222111 11111
Q ss_pred cCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeE-EEEccCC--CEEEEecCCCcEEEEEcCCC
Q 022716 168 TGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRT-ISFSHTG--DYIASASEDLFIDISNVHTG 244 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~-l~~sp~~--~~l~s~s~d~~i~iw~~~~~ 244 (293)
.++.-..+...+..-+-+..+.-..+|-.+.......+ .. .++.. ..|+... .-++.. .++.++|..+.+.
T Consensus 652 ---~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l-~~-~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~ 725 (1158)
T 3ei3_A 652 ---QPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV-NL-KEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEI 725 (1158)
T ss_dssp ---SCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB-SS-SCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCS
T ss_pred ---CceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc-Ch-HHhceEeccCcccCCCcEEEE-cCCceEEEEeccc
Confidence 01111111111111111112233333333322111111 11 23433 3354321 223333 3455888877554
Q ss_pred C--EEEEEecCCCcceeEECCCCCeEEEEEcC
Q 022716 245 R--TVHQIPCRAAMNSVEWNPKYNLLAYAGDD 274 (293)
Q Consensus 245 ~--~~~~~~~~~~i~~~~~sp~~~~la~~~~d 274 (293)
. .+++++.+..++.++++|..+.++.+..+
T Consensus 726 ~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 726 QKLHIRTVPLYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp SSEEEEEEECSSEEEEEEEEGGGTEEEEEEEE
T ss_pred CCeeEEEEeCCCCceEEEEcCCCCEEEEEEEe
Confidence 3 35667888889999999988877666543
No 335
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.29 E-value=3.8 Score=35.38 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=59.9
Q ss_pred CEEEEEECCCCC-EEEEecCCCcEEEEeCCCCE---EEEEeec---------cCCCeeEEEEccC----CCEEEEec--C
Q 022716 172 GCYCIAIDPMGR-YFAVGSADSLVSLWDISEML---CVRTFTK---------LEWPVRTISFSHT----GDYIASAS--E 232 (293)
Q Consensus 172 ~~~~~~~~~~~~-~l~~gs~d~~i~iwd~~~~~---~~~~~~~---------~~~~v~~l~~sp~----~~~l~s~s--~ 232 (293)
....+++.|++. .|+++...|.|++++..... .+..+.. .+.....|+|+|+ +.+.++-+ .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 456789999986 45555678999999753221 1111111 1346788999997 33333322 1
Q ss_pred C----------CcEEEEEcCC----------CCEEEEEecC---CCcceeEECCCCCeEEEEEcCCC
Q 022716 233 D----------LFIDISNVHT----------GRTVHQIPCR---AAMNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 233 d----------~~i~iw~~~~----------~~~~~~~~~~---~~i~~~~~sp~~~~la~~~~d~~ 276 (293)
+ ..|.-|.... .+.+..+... -.-..|+|.|||.++++.|+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~ 161 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMI 161 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCC
Confidence 1 1333344432 1233333311 12467999999999888887654
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.60 E-value=5.8 Score=31.99 Aligned_cols=202 Identities=7% Similarity=-0.033 Sum_probs=98.8
Q ss_pred EEECCCCCeEEEEeCC--------------CcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEE---eCC
Q 022716 26 VAWNCTGTKLASGSVD--------------QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA---SGD 88 (293)
Q Consensus 26 l~~s~~~~~l~s~~~d--------------g~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~---~~d 88 (293)
--++++|++|.-.... ..|+..+++.. ... .+.. .... .+++.+..+.++- ..+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~--~~~---~l~~--~~~~--~~s~~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH--GST---VLDP--DPCI--YASLIGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC--CCE---EEEC--SCEE--EEEEETTEEEEEEESSSSC
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC--cce---Eeec--CCcc--EEEEeCCEEEEEeecCCCC
Confidence 3457899998766543 34555555532 111 1211 1222 3455544444443 234
Q ss_pred CeEEEEeCCCCeeeeeeeecCceEEEEEcCCCCEEEEEeC-CCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEe
Q 022716 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (293)
Q Consensus 89 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 167 (293)
..|...++........... .. .+++|+++.|.-.+. ..+|...++..........
T Consensus 129 ~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-------------------- 184 (302)
T 3s25_A 129 TSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-------------------- 184 (302)
T ss_dssp EEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--------------------
T ss_pred ceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--------------------
Confidence 5566666654332222111 11 345778887776554 5677777765543221110
Q ss_pred cCCCCEEEEEECCCCCEEEEecCC--CcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCCEEEEec--CCCcEEEEEcCC
Q 022716 168 TGNAGCYCIAIDPMGRYFAVGSAD--SLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGDYIASAS--EDLFIDISNVHT 243 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~gs~d--~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s--~d~~i~iw~~~~ 243 (293)
... ...++|++.+|+-...+ ..|..-++.... ...+.. ..+ ..|+|++.+|.-++ ....|..-++..
T Consensus 185 ---~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 185 ---CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp ---SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred ---CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 011 12244777766554433 245555555443 223322 233 33788898886553 345566666643
Q ss_pred CCEEEEEecCCCcceeEECCCCCeEEEEEc
Q 022716 244 GRTVHQIPCRAAMNSVEWNPKYNLLAYAGD 273 (293)
Q Consensus 244 ~~~~~~~~~~~~i~~~~~sp~~~~la~~~~ 273 (293)
...+.+... .+. .+++.+.+|.....
T Consensus 256 -~~r~~l~~~-~~~--~i~i~~d~Iy~td~ 281 (302)
T 3s25_A 256 -TGFKELAKG-EFC--NINVTSQYVYFTDF 281 (302)
T ss_dssp -CCCEEEEES-CEE--EEEECSSEEEEEET
T ss_pred -CccEEeeCC-ccc--eEEEeCCEEEEEEC
Confidence 322333222 122 45667777777763
No 337
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.44 E-value=9 Score=33.96 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=63.9
Q ss_pred EEEECCCCCEEEEec-CCCcEEEEeCCCCEE-------------EEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 175 CIAIDPMGRYFAVGS-ADSLVSLWDISEMLC-------------VRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs-~d~~i~iwd~~~~~~-------------~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
-+.++|+|+++++++ .+.++.++|.++... ..+. .........+|.++|....|--.|..|-.|+
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 467899999876665 488999999874211 1111 2334578889999996556667999999999
Q ss_pred cCCC----------CEEEEEecCCCcceeE------ECCCCCeEEEEEc
Q 022716 241 VHTG----------RTVHQIPCRAAMNSVE------WNPKYNLLAYAGD 273 (293)
Q Consensus 241 ~~~~----------~~~~~~~~~~~i~~~~------~sp~~~~la~~~~ 273 (293)
+... ..+.+++-+-.+--+. -.|+|++|++...
T Consensus 406 i~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 406 MEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp HHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred ccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 8652 2333443222222221 2588999988874
No 338
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=89.68 E-value=7.6 Score=31.93 Aligned_cols=204 Identities=14% Similarity=0.117 Sum_probs=113.0
Q ss_pred CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-eeeeeeee
Q 022716 29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KCSQQAEL 107 (293)
Q Consensus 29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 107 (293)
+|..+.||--. ..+++++|++.. .+..... ....|....|-.. +.|+- =.+..|.-|++... .+...+..
T Consensus 75 nP~~~ViALra-g~~LQiFnletK--~klks~~---~~e~VvfWkWis~--~~L~l-VT~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMK--SKMKAHT---MTDDVTFWKWISL--NTVAL-VTDNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTT--EEEEEEE---CSSCEEEEEECSS--SEEEE-EESSEEEEEESSTTCCCEEEEEC
T ss_pred CCCccEEEEec-CCeEEEechHHh--hhhccee---cCCccEEEEecCC--CeEEE-EcCCcEEEEcccCCCCCceeeec
Confidence 67777776554 688999999853 1222221 2456778888543 33322 23578999998643 33333333
Q ss_pred -----cCceEEEEEcCCCCEEEEEeC---C----CeEEEEEccccceeee---------eccc-----ceeeeeEEe-cC
Q 022716 108 -----SGENINITYKPDGTHIAVGNR---D----DELTILDVRKFKPIHR---------RKFG-----YEVNEIAWN-MT 160 (293)
Q Consensus 108 -----~~~~~~~~~~~~~~~l~~~~~---d----~~i~l~d~~~~~~~~~---------~~~~-----~~~~~v~~~-~~ 160 (293)
...++..+.+++.++++..+- + |.+.||..+....... .+.+ ..+.++++. +.
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 234667778899998776552 3 4567777655432111 0100 111222221 11
Q ss_pred C-CEEEEecC-----------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716 161 G-EMFFLTTG-----------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR 216 (293)
Q Consensus 161 ~-~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~ 216 (293)
+ ++..+.-+ .+-..++-+++....+-.-+.-|.|++||++++.++..-+....+|-
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF 305 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 305 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceE
Confidence 1 11111111 11234555666666777788899999999999999887666666665
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEc
Q 022716 217 TISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 217 ~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
.-+.+....=++.....|.|.--.+
T Consensus 306 ~ta~~~~~~Gi~~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 306 VTAPHEATAGIIGVNRKGQVLSVCV 330 (365)
T ss_dssp EEEEEGGGTEEEEEETTCEEEEEEE
T ss_pred EecccCCCCcEEEEcCCCEEEEEEE
Confidence 5554444333444445555444433
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.91 E-value=8.4 Score=31.43 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=44.9
Q ss_pred CCCEEEEecC------CCcEEEEeC--CCCEEE--EEeeccCCCeeEEEEccCCCEEEEecCC-----------------
Q 022716 181 MGRYFAVGSA------DSLVSLWDI--SEMLCV--RTFTKLEWPVRTISFSHTGDYIASASED----------------- 233 (293)
Q Consensus 181 ~~~~l~~gs~------d~~i~iwd~--~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~s~s~d----------------- 233 (293)
++++++.|+. ...+..||+ .+..-. ..+..........+...+++.++.|+.+
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 4566666653 345777876 433222 1111111111212233467777777732
Q ss_pred -----CcEEEEEcCCCC--EEEEEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 234 -----LFIDISNVHTGR--TVHQIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 234 -----~~i~iw~~~~~~--~~~~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
..+.++|+.+.+ .+..++... ....+...++.+++.||.+.
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQGR-AYGVSLPWNNSLLIIGGETA 327 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSCC-BSSEEEEETTEEEEEEEECG
T ss_pred cccceeeEEEEecCCCceeeCCCCCCCc-ccceeEEeCCEEEEEeeeCC
Confidence 246788987654 233333221 11222334678999999764
No 340
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=88.26 E-value=8.6 Score=30.76 Aligned_cols=170 Identities=11% Similarity=0.050 Sum_probs=82.3
Q ss_pred EEEEEeCCCeEEEEeCCCCeeeeeeeecC---ceEEEEEcCCCCEEEEEeC----C-------CeEEEEEccccceeeee
Q 022716 81 LIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNR----D-------DELTILDVRKFKPIHRR 146 (293)
Q Consensus 81 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~----d-------~~i~l~d~~~~~~~~~~ 146 (293)
+++.|+ ..+..||..+.+... ..... .........+++.++.|+. + ..+..+|+.+.+-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344455 568889998877543 22221 1112233457777777773 1 12556676554321111
Q ss_pred cccceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCC--------CcEEEEeCCCCEEEEEeeccCC-CeeE
Q 022716 147 KFGYEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSAD--------SLVSLWDISEMLCVRTFTKLEW-PVRT 217 (293)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d--------~~i~iwd~~~~~~~~~~~~~~~-~v~~ 217 (293)
..+.. + ....++.+ ++..++.|+.+ +.+.+||..+.+-.. +..... .-..
T Consensus 84 ~~p~~-----------r-------~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~ 142 (315)
T 4asc_A 84 PLPSP-----------R-------CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGH 142 (315)
T ss_dssp CBSSC-----------E-------ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBSC
T ss_pred CCCcc-----------h-------hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccce
Confidence 11000 0 00011122 55666666632 468899988764322 211111 1111
Q ss_pred EEEccCCCEEEEecC-C-----CcEEEEEcCCCCEEE--EEecCCC-cceeEECCCCCeEEEEEcCCC
Q 022716 218 ISFSHTGDYIASASE-D-----LFIDISNVHTGRTVH--QIPCRAA-MNSVEWNPKYNLLAYAGDDKN 276 (293)
Q Consensus 218 l~~sp~~~~l~s~s~-d-----~~i~iw~~~~~~~~~--~~~~~~~-i~~~~~sp~~~~la~~~~d~~ 276 (293)
.+...+++.++.|+. + ..+.++|..+.+-.. .++.... -..+.+ ++.+++.||.++.
T Consensus 143 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 208 (315)
T 4asc_A 143 TVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDT 208 (315)
T ss_dssp EEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSS
T ss_pred eEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCC
Confidence 122246677777775 2 457888887754222 1221111 112223 6678889987654
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=86.46 E-value=11 Score=30.13 Aligned_cols=93 Identities=12% Similarity=0.093 Sum_probs=47.8
Q ss_pred CCCCEEEEecC------CCcEEEEeCCCCEEEEE--eeccCCCeeEEEEccCCCEEEEecCC-----CcEEEEEcCCCCE
Q 022716 180 PMGRYFAVGSA------DSLVSLWDISEMLCVRT--FTKLEWPVRTISFSHTGDYIASASED-----LFIDISNVHTGRT 246 (293)
Q Consensus 180 ~~~~~l~~gs~------d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~s~s~d-----~~i~iw~~~~~~~ 246 (293)
.++++++.|+. -+.+.+||+.+.+-... +......-.++. -+++.++.|+.+ ..+.++|..+.+-
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 35667777764 24589999887643321 111111112222 366777777643 3467888877653
Q ss_pred EE--EEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 247 VH--QIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 247 ~~--~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.. .++....-.++. .-++.+++.||.+.
T Consensus 235 ~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~ 264 (318)
T 2woz_A 235 EVMTEFPQERSSISLV-SLAGSLYAIGGFAM 264 (318)
T ss_dssp EECCCCSSCCBSCEEE-EETTEEEEECCBCC
T ss_pred EECCCCCCcccceEEE-EECCEEEEECCeec
Confidence 22 122111111222 22567888888654
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.44 E-value=8.9 Score=38.12 Aligned_cols=111 Identities=10% Similarity=0.125 Sum_probs=67.4
Q ss_pred EEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCeeEEEEccCCC-EEEEecCCCcEEEEEcCCCCEE-EEEec-
Q 022716 176 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISFSHTGD-YIASASEDLFIDISNVHTGRTV-HQIPC- 252 (293)
Q Consensus 176 ~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~s~s~d~~i~iw~~~~~~~~-~~~~~- 252 (293)
.-++|..+.+|.-. ..++.|||+++..+++++.- ..+|.-=.|-.+.. -|+| +..|+-|++...... +.+..
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcc
Confidence 34578777777765 67899999988766665532 23555555543332 2343 345899999643222 21211
Q ss_pred ----CCCcceeEECCCCCeEEEEEcCCCCCCCCcceEEEEeeec
Q 022716 253 ----RAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIYGFEN 292 (293)
Q Consensus 253 ----~~~i~~~~~sp~~~~la~~~~d~~~~~~~~~~~~~~~~~~ 292 (293)
...|.+-.-+++.+.++..|-...-- .-.|.|.+|++|+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~-~v~G~mQLyS~er 188 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQN-RVVGAMQLYSVDR 188 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCC-cccceeeeeeccc
Confidence 22355566678888888777522111 3459999999986
No 343
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.33 E-value=23 Score=33.66 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=33.6
Q ss_pred CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec
Q 022716 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 252 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~ 252 (293)
.+.+++..++..++.+-+.|+.+++|++.+++.+.....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467777788889999999999999999999998877653
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=86.21 E-value=29 Score=34.69 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=96.3
Q ss_pred CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCC--cCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCe-eeeee
Q 022716 29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH--ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-CSQQA 105 (293)
Q Consensus 29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h--~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~ 105 (293)
+|..+.||--. ..+++|+|++... + +..| ...|....|-.. +.|+ -=.+..|.-|++.... +...+
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~--k-----lks~~~~e~VvfWkWis~--~~l~-lVT~~aVyHW~~~~~s~P~k~f 142 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKS--K-----MKAHTMTDDVTFWKWISL--NTVA-LVTDNAVYHWSMEGESQPVKMF 142 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhh--h-----hcccccCCCceEEEecCC--CeeE-EEcCCeEEEeccCCCCccHHHH
Confidence 34455555443 5788899886421 1 2222 346777788543 2222 2235789999996432 22222
Q ss_pred ee-----cCceEEEEEcCCCCEEEEEe-------CCCeEEEEEccccceeee---------ec-----ccceeeeeEEe-
Q 022716 106 EL-----SGENINITYKPDGTHIAVGN-------RDDELTILDVRKFKPIHR---------RK-----FGYEVNEIAWN- 158 (293)
Q Consensus 106 ~~-----~~~~~~~~~~~~~~~l~~~~-------~d~~i~l~d~~~~~~~~~---------~~-----~~~~~~~v~~~- 158 (293)
.. ...+++.+.+++.++++..+ -.|.+.++..+....... .+ .+..+.++.+.
T Consensus 143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence 21 34566777888889887654 236677777654322100 00 11112222222
Q ss_pred cCCCEEE-EecC-----------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCC
Q 022716 159 MTGEMFF-LTTG-----------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWP 214 (293)
Q Consensus 159 ~~~~~~~-~~~~-----------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~ 214 (293)
+.|..+. +.-+ .+-..++.+++....+..-+.-|.|++||+.++.++..-+....+
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~ 302 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGET 302 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCc
Confidence 1121111 1110 111345566666677778888999999999999877654433444
Q ss_pred eeEEEEc
Q 022716 215 VRTISFS 221 (293)
Q Consensus 215 v~~l~~s 221 (293)
|-..+.+
T Consensus 303 iF~~~~~ 309 (1630)
T 1xi4_A 303 IFVTAPH 309 (1630)
T ss_pred eEEeccC
Confidence 4444433
No 345
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=86.06 E-value=4.1 Score=33.54 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=66.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeeeeeeec--CceEEEEE--cCCCCEEEEE--eCCCeEEEEEccccceeeeecccceee
Q 022716 80 DLIATASGDKTVRLWDARSGKCSQQAELS--GENINITY--KPDGTHIAVG--NRDDELTILDVRKFKPIHRRKFGYEVN 153 (293)
Q Consensus 80 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~--~~~~~~l~~~--~~d~~i~l~d~~~~~~~~~~~~~~~~~ 153 (293)
.+++.++.||.|.-.|..+|+.+-.++.. .+.....- .+.+..++.+ +.||.+..++..+.........+..+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46778999999999999999877766554 22222110 1112244444 579999999977653221111110000
Q ss_pred eeEEecCCCEEEEecCCCCEE-EEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEee
Q 022716 154 EIAWNMTGEMFFLTTGNAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 209 (293)
Q Consensus 154 ~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~ 209 (293)
..+... ...++. ..--...+..+.+|+.++.+...|+++|+.+-++.
T Consensus 91 ------~SP~~~---~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 91 ------TSPLHL---KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp ------TCSEEE---ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ------cccccc---CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 000000 000000 00000145678889999999999999998887764
No 346
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=84.36 E-value=14 Score=29.50 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=47.8
Q ss_pred CCCEEEEecCC-------CcEEEEeCCCCEEEEEeeccCCC-eeEEEEccCCCEEEEecC------CCcEEEEEcCCCCE
Q 022716 181 MGRYFAVGSAD-------SLVSLWDISEMLCVRTFTKLEWP-VRTISFSHTGDYIASASE------DLFIDISNVHTGRT 246 (293)
Q Consensus 181 ~~~~l~~gs~d-------~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~s~s~------d~~i~iw~~~~~~~ 246 (293)
++..++.|+.+ +.+.+||..+.+-.. +.....+ -...+...+++..+.|+. -..+.++|..+.+-
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 56666777653 357888987764332 1111111 111112246777777764 23488999887643
Q ss_pred EE--EEecCCCcceeEECCCCCeEEEEEcCC
Q 022716 247 VH--QIPCRAAMNSVEWNPKYNLLAYAGDDK 275 (293)
Q Consensus 247 ~~--~~~~~~~i~~~~~sp~~~~la~~~~d~ 275 (293)
.. .++....-.++.. -++.+++.||.+.
T Consensus 188 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 217 (318)
T 2woz_A 188 KDLAPMKTPRSMFGVAI-HKGKIVIAGGVTE 217 (318)
T ss_dssp EEECCCSSCCBSCEEEE-ETTEEEEEEEEET
T ss_pred EECCCCCCCcccceEEE-ECCEEEEEcCcCC
Confidence 22 1221111112222 2567888888764
No 347
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=81.29 E-value=25 Score=30.18 Aligned_cols=204 Identities=14% Similarity=0.106 Sum_probs=113.4
Q ss_pred CCCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCC-eeeeeeee
Q 022716 29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KCSQQAEL 107 (293)
Q Consensus 29 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 107 (293)
+|..+.||--. ..+++|+|++.. .+..... ....|....|-.. +.|+ -=.+..|.-|++... .+...+..
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K--~klks~~---~~e~VvfWkWis~--~~l~-lVT~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMK--SKMKAHT---MTDDVTFWKWISL--NTVA-LVTDNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTT--EEEEEEE---CSSCCCEEEEEET--TEEE-EECSSEEEEEESSSSCCCEEEEEC
T ss_pred CCCCcEEEEec-CCeEEEEchHHh--hhhccee---cCCCceEEEecCC--CeEE-EEcCCeeEEecccCCCCchhheec
Confidence 56666666544 689999999753 1222111 1346777788543 2332 234678999999643 33333333
Q ss_pred -----cCceEEEEEcCCCCEEEEEeC-------CCeEEEEEccccceeee---------eccc-----ceeeeeEEec-C
Q 022716 108 -----SGENINITYKPDGTHIAVGNR-------DDELTILDVRKFKPIHR---------RKFG-----YEVNEIAWNM-T 160 (293)
Q Consensus 108 -----~~~~~~~~~~~~~~~l~~~~~-------d~~i~l~d~~~~~~~~~---------~~~~-----~~~~~v~~~~-~ 160 (293)
...++....+++.++++..+- .|.+.+|..+....... .+.+ ..+.++++.. .
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 234667788899998876552 34567777655432111 0000 1122222211 1
Q ss_pred C-CEEEEecC-----------------------CCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEeeccCCCee
Q 022716 161 G-EMFFLTTG-----------------------NAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVR 216 (293)
Q Consensus 161 ~-~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~~~~~~~v~ 216 (293)
+ ++..+.-+ .+-..++-+++....+..-+.-|.|++||++++.++..-+....+|-
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 1 11111111 11244666677777788888999999999999998877665556665
Q ss_pred EEEEccCCCEEEEecCCCcEEEEEc
Q 022716 217 TISFSHTGDYIASASEDLFIDISNV 241 (293)
Q Consensus 217 ~l~~sp~~~~l~s~s~d~~i~iw~~ 241 (293)
..+......=++.....|.|.--.+
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEE
T ss_pred EecccCCCCcEEEEccCceEEEEEE
Confidence 5555444444444445555444433
No 348
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=80.96 E-value=3.6 Score=37.49 Aligned_cols=69 Identities=7% Similarity=0.137 Sum_probs=42.6
Q ss_pred cCCCEEEEecCCCcEEEEEcCCCCEEEEEecCCCc--ceeEECC---CCCeEEEEEcCCCC--CC-CCcceEEEEeeec
Q 022716 222 HTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAM--NSVEWNP---KYNLLAYAGDDKNK--YQ-ADEGVFRIYGFEN 292 (293)
Q Consensus 222 p~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~i--~~~~~sp---~~~~la~~~~d~~~--~~-~~~~~~~~~~~~~ 292 (293)
++..++++-+.|..+|+|++.+++.+......... ..-...| .+++|...+ ... |. .+.|.||+|+++.
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~--~~lv~y~P~~~G~Fk~~~l~~ 305 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYN--NTLVTLLPLENGLFQMGTLLV 305 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESS--SEEEEEETTTTCEEEEEEEEC
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhhee--eEEEEEecCCCCeEEEEEEEE
Confidence 45789999999999999999999988776652111 0001222 334443332 000 11 3568999998853
No 349
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=77.13 E-value=28 Score=28.33 Aligned_cols=166 Identities=10% Similarity=0.058 Sum_probs=89.0
Q ss_pred cEEEE-EECC--CCCeEEEEeCCCcEEEeecCCCCCC---ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEe
Q 022716 22 KVHSV-AWNC--TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (293)
Q Consensus 22 ~v~~l-~~s~--~~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd 95 (293)
.|..+ .... +...+++++.+|.++.-.+...... ....+.+... +.+..+..... .+.++..+..|.+..+.
T Consensus 96 ~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~-~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 96 RIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSA-GDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECT-TCEEEEEETTSEEEEEE
T ss_pred EEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecC-CCEEEEEECCCeEEEEE
Confidence 44444 4443 5789999999999999876532211 1222334332 33444333322 34566678888887776
Q ss_pred CC--CCee-------eeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716 96 AR--SGKC-------SQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 96 ~~--~~~~-------~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
.. .-.. ...+. -...+..+...+++.+++..+..|.++...+..+....+- +..+..+....
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~--~~G~~~~~l~~----- 246 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRG--GKGVLTVMYDR----- 246 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTT--SCCEESSCCCT-----
T ss_pred CcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcC--CCcEEEEEecC-----
Confidence 65 1110 11111 2334556665566678999999999998887665443221 11122221111
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 200 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~ 200 (293)
..+.+..+....+...++..+.+|.+.-++..
T Consensus 247 ----~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 247 ----RRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp ----TTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred ----CCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 01222222222344566667777777777653
No 350
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=72.38 E-value=75 Score=31.00 Aligned_cols=110 Identities=13% Similarity=0.209 Sum_probs=65.7
Q ss_pred CeeEEEEcCCCCCEEEEEeCCCeEEEEeCCCCeee--eeeeecCceEEEEEcCC------CCEEEEEeC-CCeEEEEEcc
Q 022716 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS--QQAELSGENINITYKPD------GTHIAVGNR-DDELTILDVR 138 (293)
Q Consensus 68 ~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~------~~~l~~~~~-d~~i~l~d~~ 138 (293)
.|...+.+. .+++.++ ++.+.++.++.++.. ...+....+.++++.|. ++++++|.. |++++++++.
T Consensus 515 ~I~~As~n~---~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 515 NISVASCNS---SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCEEEECS---SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred EEEEEEeCC---CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 455555543 2444444 577777777655432 23445677888888753 368999996 9999999998
Q ss_pred ccceeeeecccc--eeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCC
Q 022716 139 KFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 200 (293)
Q Consensus 139 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~ 200 (293)
..+.+.....+. ...+ +..+.+ ....+|..|-.||.+.-+.+.
T Consensus 591 ~l~~~~~~~L~~~~~p~s------------------i~l~~~-~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRS------------------ILMTTF-ESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp TCCEEEEEECCSSCCEEE------------------EEEEEE-TTEEEEEEEETTSEEEEEEEC
T ss_pred CCCeEEEEECCCCCCCcE------------------EEEEEe-CCCcEEEEEeCCCeEEEEEEc
Confidence 765543322211 1111 111122 234578888899987666543
No 351
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=71.89 E-value=18 Score=32.28 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=40.6
Q ss_pred EEEEEECCCCCEEEEecCC------------CcEEEEeCCCCEEEEEeeccC-CCeeEEEEccCCCEEEEe
Q 022716 173 CYCIAIDPMGRYFAVGSAD------------SLVSLWDISEMLCVRTFTKLE-WPVRTISFSHTGDYIASA 230 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d------------~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~s~ 230 (293)
.=.|+|+|.|++++.-..+ +.+.+.+..+++..+-+.... ..++.++|+||++.|...
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3468899999977665432 346666777776555555443 478999999999888665
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.49 E-value=49 Score=28.45 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCeEEEEEcc
Q 022716 109 GENINITYKPDGT-HIAVGNRDDELTILDVR 138 (293)
Q Consensus 109 ~~~~~~~~~~~~~-~l~~~~~d~~i~l~d~~ 138 (293)
..+..|+|.|+|. .+++....|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4567899999996 56666788999999753
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.27 E-value=76 Score=30.18 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeee
Q 022716 111 NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR 146 (293)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~ 146 (293)
+.+++..++..++++-+.|+++++|++.+++.+...
T Consensus 238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 345667788889999999999999999998776654
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=65.35 E-value=44 Score=29.70 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=40.1
Q ss_pred EEEEEECCCCCEEEEecC------------CCcEEEEeCCCCEEEEEeecc-CCCeeEEEEccCCCEEEEe
Q 022716 173 CYCIAIDPMGRYFAVGSA------------DSLVSLWDISEMLCVRTFTKL-EWPVRTISFSHTGDYIASA 230 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~------------d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s~ 230 (293)
.-.|+|+++|.+.+.... .+.+..++..+++....+... ...++.++|+||++.|..+
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 457899999988774332 225777777777654444433 2468999999999988665
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.30 E-value=26 Score=34.09 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=30.6
Q ss_pred EEEEEECCCCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 173 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 173 ~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
+.+++..++..++.+-+.|+++++|++.++.++.+.
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 445566788899999999999999999999888764
No 356
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.64 E-value=39 Score=30.04 Aligned_cols=59 Identities=10% Similarity=0.164 Sum_probs=41.2
Q ss_pred CeeEEEEccCCCEEE-EecC-----------CCcEEEEEcCCCCEEEEEe--cCCCcceeEECCCCCeEEEEE
Q 022716 214 PVRTISFSHTGDYIA-SASE-----------DLFIDISNVHTGRTVHQIP--CRAAMNSVEWNPKYNLLAYAG 272 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~-s~s~-----------d~~i~iw~~~~~~~~~~~~--~~~~i~~~~~sp~~~~la~~~ 272 (293)
....|.|.++|.+.+ +-.. ...+...+..+++....+. ....++.++|+||++.|.++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 467799999998766 5332 2257777777777655443 234689999999998776654
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.40 E-value=60 Score=26.12 Aligned_cols=197 Identities=11% Similarity=0.033 Sum_probs=104.5
Q ss_pred CCCCeEEEEeCCCcEEEeecCCCCCC-----ceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeCC---CCee
Q 022716 30 CTGTKLASGSVDQTARVWHIEPHGHG-----KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR---SGKC 101 (293)
Q Consensus 30 ~~~~~l~s~~~dg~v~iw~~~~~~~~-----~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~~---~~~~ 101 (293)
++...+++.+.+|.||--.+...... ......+... +.+..+..... .+.++..+..|.++-.... ....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~-~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNT-HDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEET-TCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECC-CCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 46678899999999998766432111 1111222222 23333322222 3456667888887665532 1110
Q ss_pred ee-------e--eeecCceEEEEEcC---CCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecC
Q 022716 102 SQ-------Q--AELSGENINITYKP---DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (293)
Q Consensus 102 ~~-------~--~~~~~~~~~~~~~~---~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 169 (293)
.. . +.-...+..+...+ ++.+++..+..|.++-..+..+...+ +..+..+....
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r----~~G~~~i~L~~---------- 149 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK----SRGVIVIKLND---------- 149 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--------CEECBCCCT----------
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC----CCcEEEEecCC----------
Confidence 00 1 11122344443322 46678889999999998876654322 11122221111
Q ss_pred CCCEEEEEECCCCCEEEEecCCCcEEEEeCCC---------CEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEE
Q 022716 170 NAGCYCIAIDPMGRYFAVGSADSLVSLWDISE---------MLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISN 240 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~ 240 (293)
.+.+..+.....+..++..+.+|.+..+.... |...-.+.. ...|.++..-+++..+++.+..|..+...
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 22333333334456788889999998887643 222222222 33566665555667788889999988888
Q ss_pred cCC
Q 022716 241 VHT 243 (293)
Q Consensus 241 ~~~ 243 (293)
+..
T Consensus 229 ~~e 231 (312)
T 1suu_A 229 MSK 231 (312)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
No 358
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=56.40 E-value=72 Score=25.13 Aligned_cols=203 Identities=12% Similarity=-0.023 Sum_probs=103.0
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEE---eecCCCCCCceeEEEeeCCcCCeeEEEEcCC-CCCEEEEEeCCCeEEEEeC
Q 022716 21 KKVHSVAWNCTGTKLASGSVDQTARV---WHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDA 96 (293)
Q Consensus 21 ~~v~~l~~s~~~~~l~s~~~dg~v~i---w~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~-~~~~l~s~~~d~~i~vwd~ 96 (293)
+.+..+.-....+.|+.-+.+|.++- |++... ....+ +. ....|..+.. ++ ....++.++.+|.++...+
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~---~~~~l-l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l 97 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG---SKVSL-KS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPL 97 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS---EECCC-SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC---ccccc-CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEH
Confidence 34555544444455666666776664 333211 11112 32 2345555543 32 3457888999999998876
Q ss_pred CCCe----eeeeee--ecCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCC
Q 022716 97 RSGK----CSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (293)
Q Consensus 97 ~~~~----~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 170 (293)
..-. -...+. -......+........++..+..|.+..+.........+...+ +..+... .+
T Consensus 98 ~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G--v~~i~L~----------~~ 165 (276)
T 3no0_A 98 AEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG--VQGIKLE----------KN 165 (276)
T ss_dssp GGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC--EECCCCC----------TT
T ss_pred HHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC--EEEEccC----------CC
Confidence 4321 111112 2234555555555668888999999888876543322111111 1111111 12
Q ss_pred CCEEEEEECCCCCEEEEecCCCcEEEEeCCCCE-------EEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEE--EEc
Q 022716 171 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEML-------CVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDI--SNV 241 (293)
Q Consensus 171 ~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~-------~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~i--w~~ 241 (293)
..+..+...+++..++..+..|.++...+.... -+..+ .-...+..+....+...++..+.+|.+.. .+.
T Consensus 166 d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 166 DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 233343333456788888999998888764321 11222 11233433333233345555566666555 554
Q ss_pred C
Q 022716 242 H 242 (293)
Q Consensus 242 ~ 242 (293)
.
T Consensus 245 ~ 245 (276)
T 3no0_A 245 K 245 (276)
T ss_dssp G
T ss_pred H
Confidence 3
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=55.27 E-value=82 Score=25.48 Aligned_cols=198 Identities=8% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCCCeEEEEeCCCcEEEeecCCCCCCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC---------CCCe
Q 022716 30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA---------RSGK 100 (293)
Q Consensus 30 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~---------~~~~ 100 (293)
|+...+++.+.+|.||--.+............+......+..+..+.. +.|+-.+..|.+.-... ..|.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~--d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTK--DVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETT--SEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCC--CEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Q ss_pred ---eeeeeeecCceEEEEEcCC---CCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEEEEecCCCCEE
Q 022716 101 ---CSQQAELSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNAGCY 174 (293)
Q Consensus 101 ---~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 174 (293)
..-.+.-...+..+..-++ +.+++..+..|.++-..+..+...++ .-+.....+. ..+.+.
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r-~~G~~ai~l~------------e~d~lv 147 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY-SKPLTGINLK------------NDDQVV 147 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC-SSCEECSCCC------------TTCCEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc-cCceEEEEeC------------CCCEEE
Q ss_pred EEEECCCCCEEEEecCCCcEEEEeCC---------CCEEEEEeeccCCCeeEEEEccCCCEEEEecCCCcEEEEEcC
Q 022716 175 CIAIDPMGRYFAVGSADSLVSLWDIS---------EMLCVRTFTKLEWPVRTISFSHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 175 ~~~~~~~~~~l~~gs~d~~i~iwd~~---------~~~~~~~~~~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
.+........++..+.+|.+..+... .|...-.+...+.-+....+.++...+++.+..|..+..++.
T Consensus 148 ~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 148 DVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
No 360
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.87 E-value=49 Score=29.49 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=38.9
Q ss_pred eeEEEEccCCCEEEEecCC------------CcEEEEEcCCCCEEEEE--ecCCCcceeEECCCCCeEEEE
Q 022716 215 VRTISFSHTGDYIASASED------------LFIDISNVHTGRTVHQI--PCRAAMNSVEWNPKYNLLAYA 271 (293)
Q Consensus 215 v~~l~~sp~~~~l~s~s~d------------~~i~iw~~~~~~~~~~~--~~~~~i~~~~~sp~~~~la~~ 271 (293)
...|+|+|.|.+++.-..+ ..+.+.+..+++..+.+ +....++.+.|+||++.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4679999999866553221 23555666677765544 345678899999999877665
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=50.89 E-value=89 Score=24.57 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=70.2
Q ss_pred cccEEEEEECC-CCCeEEEEeCCCcEEEeecCCCC--CCceeEEEeeCCcCCeeEEEEcCCCCCEEEEEeCCCeEEEEeC
Q 022716 20 KKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHG--HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (293)
Q Consensus 20 ~~~v~~l~~s~-~~~~l~s~~~dg~v~iw~~~~~~--~~~~~~~~~~~h~~~i~~~~~~~~~~~~l~s~~~d~~i~vwd~ 96 (293)
...|..+.-.. +...++.++.+|.++...+.... ......+.+.. .+.+..+.... ..+.++..+..|.+..++.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~-~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSV-DETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECC-SSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeC-CCCEEEEEECCCEEEEEEh
Confidence 44566654321 46789999999999998765421 11122223332 23444444433 3346667888999877764
Q ss_pred CC----C---eeeeeeee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccce
Q 022716 97 RS----G---KCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKP 142 (293)
Q Consensus 97 ~~----~---~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~ 142 (293)
.. + .-...+.+ ...+..+...+++..++..+..|..+...+.....
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~ 199 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPK 199 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCC
T ss_pred hhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHccc
Confidence 21 1 11111222 23455555555667888999999998888766543
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=44.63 E-value=46 Score=30.44 Aligned_cols=28 Identities=18% Similarity=0.583 Sum_probs=25.0
Q ss_pred CCCEEEEecCCCcEEEEeCCCCEEEEEe
Q 022716 181 MGRYFAVGSADSLVSLWDISEMLCVRTF 208 (293)
Q Consensus 181 ~~~~l~~gs~d~~i~iwd~~~~~~~~~~ 208 (293)
+..++++-+.|.++|+|+++++.++.+.
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 4789999999999999999999887664
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=41.03 E-value=2.6e+02 Score=27.14 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=32.4
Q ss_pred CeeEEEEccCCCEEEEecCCCcEEEEEcCCCCEEEEEec
Q 022716 214 PVRTISFSHTGDYIASASEDLFIDISNVHTGRTVHQIPC 252 (293)
Q Consensus 214 ~v~~l~~sp~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~ 252 (293)
.+.+++..++..++++-+.|+.+++|++.+++++.....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 345566678889999999999999999999998877653
No 364
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=39.79 E-value=96 Score=27.26 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=42.7
Q ss_pred CEEEEEECCCC--CEEEEecCCCcEEEEeCCCC----EEEEEeec--cCCCee-EEEEccCCCEEEEecCCCcEEE
Q 022716 172 GCYCIAIDPMG--RYFAVGSADSLVSLWDISEM----LCVRTFTK--LEWPVR-TISFSHTGDYIASASEDLFIDI 238 (293)
Q Consensus 172 ~~~~~~~~~~~--~~l~~gs~d~~i~iwd~~~~----~~~~~~~~--~~~~v~-~l~~sp~~~~l~s~s~d~~i~i 238 (293)
..++|+....+ ..+..|+.+|.|+=..+... ....++.- ...+|. .+.+++++.+|..++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 45566655443 45778999998655544321 12333322 245785 8999999999999988776554
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=32.33 E-value=1.9e+02 Score=23.07 Aligned_cols=167 Identities=8% Similarity=-0.003 Sum_probs=86.4
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEeecCCCCCC------c--eeEEEeeCCcCCeeEEEEcCC--CCCEEEEEeCCCeE
Q 022716 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG------K--VKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91 (293)
Q Consensus 22 ~v~~l~~s~~~~~l~s~~~dg~v~iw~~~~~~~~------~--~~~~~~~~h~~~i~~~~~~~~--~~~~l~s~~~d~~i 91 (293)
.+..+........++..+..|.++-.....-... . ...+.+.. ...|.++...++ ....++.++..|.+
T Consensus 48 ~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~ 126 (312)
T 1suu_A 48 EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKI 126 (312)
T ss_dssp CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeE
Confidence 3444444444556777777887766554311000 0 00111221 223444432221 24567788999999
Q ss_pred EEEeCCCC-----eeeeeeee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeeeEEecCCCEE
Q 022716 92 RLWDARSG-----KCSQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (293)
Q Consensus 92 ~vwd~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (293)
+.-.+..- .-...+.+ .+....+....++..++..+..|....+......+..+.. ..+..+...
T Consensus 127 kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~--~Gv~~i~L~------ 198 (312)
T 1suu_A 127 ARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT--QGVCGMKLK------ 198 (312)
T ss_dssp EEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB--CCEECCCCC------
T ss_pred EEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC--CCeEeEEeC------
Confidence 98776321 11112222 3455555555556678889999999888876533322211 122222211
Q ss_pred EEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q 022716 165 FLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 201 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~ 201 (293)
....+..+..-.++..+++.+..|..+..++..
T Consensus 199 ----~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 199 ----EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp ----TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred ----CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 122333444434566788889999988887643
No 366
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=28.21 E-value=1.5e+02 Score=25.77 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=42.2
Q ss_pred CEEEEEECCC----C--CEEEEecCCCcEEEEeC-CCC-------EEEEEeec--cCCCeeEEEEccCCCEEEEecCCCc
Q 022716 172 GCYCIAIDPM----G--RYFAVGSADSLVSLWDI-SEM-------LCVRTFTK--LEWPVRTISFSHTGDYIASASEDLF 235 (293)
Q Consensus 172 ~~~~~~~~~~----~--~~l~~gs~d~~i~iwd~-~~~-------~~~~~~~~--~~~~v~~l~~sp~~~~l~s~s~d~~ 235 (293)
..++|+++.- + ..+..|+.+|.|+=.-+ ... ..+.++.- ...+|..+.+++++++|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4566665532 3 34778999998644332 221 11223332 3468999999999999999998876
Q ss_pred EEE
Q 022716 236 IDI 238 (293)
Q Consensus 236 i~i 238 (293)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 367
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=26.27 E-value=3.7e+02 Score=24.47 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=32.5
Q ss_pred CCeeEEEEccCCCEEEEecCCCc--EEEEEcCCCC-EEEE---EecCCCcceeEECCCCCeEE
Q 022716 213 WPVRTISFSHTGDYIASASEDLF--IDISNVHTGR-TVHQ---IPCRAAMNSVEWNPKYNLLA 269 (293)
Q Consensus 213 ~~v~~l~~sp~~~~l~s~s~d~~--i~iw~~~~~~-~~~~---~~~~~~i~~~~~sp~~~~la 269 (293)
..+..+.+..+ ..+++...++. +.+++..++. .... ++....+.....++++..++
T Consensus 350 ~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~ 411 (711)
T 4hvt_A 350 EVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEAL 411 (711)
T ss_dssp EEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEE
T ss_pred CeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEE
Confidence 35777888765 56666667765 6677766653 2223 23233455566667765443
No 368
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=24.44 E-value=12 Score=25.92 Aligned_cols=11 Identities=18% Similarity=0.700 Sum_probs=8.3
Q ss_pred ceEEEEeeecC
Q 022716 283 GVFRIYGFENA 293 (293)
Q Consensus 283 ~~~~~~~~~~~ 293 (293)
.-||||++||+
T Consensus 81 ~~mKIWs~EKl 91 (134)
T 3oq4_A 81 NYMKVWSYEKA 91 (134)
T ss_dssp TTCEEEEHHHH
T ss_pred cCCeeeeHHHH
Confidence 35899999873
No 369
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=24.30 E-value=3.1e+02 Score=24.84 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=42.7
Q ss_pred CEEEEEEC----CCC---CEEEEecCCCcEE-EEeCCCCE-EEEEeec--cCCCeeEEEEccCC--CEEEEecCCCcEEE
Q 022716 172 GCYCIAID----PMG---RYFAVGSADSLVS-LWDISEML-CVRTFTK--LEWPVRTISFSHTG--DYIASASEDLFIDI 238 (293)
Q Consensus 172 ~~~~~~~~----~~~---~~l~~gs~d~~i~-iwd~~~~~-~~~~~~~--~~~~v~~l~~sp~~--~~l~s~s~d~~i~i 238 (293)
..+.|+++ +++ ..+..|+.+|.|. +....... .+..+.. ...+|..+.++++. .+|..++.++.+++
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 34566653 333 3578899999864 33443332 2233322 34689999999988 89998888876654
No 370
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=22.85 E-value=2.8e+02 Score=25.12 Aligned_cols=54 Identities=7% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEecCCCc-EEEEeCCCCE-------EEEEeeccCC--CeeEEEEccCCCEEEEecCCCcEEE
Q 022716 185 FAVGSADSL-VSLWDISEML-------CVRTFTKLEW--PVRTISFSHTGDYIASASEDLFIDI 238 (293)
Q Consensus 185 l~~gs~d~~-i~iwd~~~~~-------~~~~~~~~~~--~v~~l~~sp~~~~l~s~s~d~~i~i 238 (293)
+..|+++|. +++....... .+.++..... +|..+.+++++++|..++.++.++|
T Consensus 432 lFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 432 MFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
No 371
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=22.44 E-value=4.1e+02 Score=23.52 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=43.7
Q ss_pred CEEEEEECC----CC--CEEEEecCCCcEE-EEeCCC-------CEEEEEeec-----------cCCCeeEEEEccCCCE
Q 022716 172 GCYCIAIDP----MG--RYFAVGSADSLVS-LWDISE-------MLCVRTFTK-----------LEWPVRTISFSHTGDY 226 (293)
Q Consensus 172 ~~~~~~~~~----~~--~~l~~gs~d~~i~-iwd~~~-------~~~~~~~~~-----------~~~~v~~l~~sp~~~~ 226 (293)
..+.|+++. ++ ..+..|+++|.|+ +..... ...+.++.- ...+|..+.++++.+.
T Consensus 404 ~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~ 483 (565)
T 3oky_B 404 RLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGS 483 (565)
T ss_dssp CEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTE
T ss_pred ceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCE
Confidence 356777664 22 4577899999874 443221 122333321 1457899999999999
Q ss_pred EEEecCCCcEEEE
Q 022716 227 IASASEDLFIDIS 239 (293)
Q Consensus 227 l~s~s~d~~i~iw 239 (293)
|..++.++.+++-
T Consensus 484 LYV~s~~~V~qVP 496 (565)
T 3oky_B 484 LYVAFSTCVIKVP 496 (565)
T ss_dssp EEEECSSCEEEEE
T ss_pred EEEEecCeEEEee
Confidence 9999988877664
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=21.83 E-value=3.2e+02 Score=22.03 Aligned_cols=152 Identities=11% Similarity=0.107 Sum_probs=82.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCee-----eeeeee--cCceEEEEEcCCCCEEEEEeCCCeEEEEEcc--ccceeeeeccc
Q 022716 79 ADLIATASGDKTVRLWDARSGKC-----SQQAEL--SGENINITYKPDGTHIAVGNRDDELTILDVR--KFKPIHRRKFG 149 (293)
Q Consensus 79 ~~~l~s~~~d~~i~vwd~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~l~d~~--~~~~~~~~~~~ 149 (293)
...++.++.+|.++.-.+..... ...+.+ ......+........++..+..|.+..+... .-.+..+...
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~- 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS- 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB-
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC-
Confidence 46788999999999887533211 111222 3345555555556788888999998888765 3222211111
Q ss_pred ceeeeeEEecCCCEEEEecCCCCEEEEEECCCCCEEEEecCCCcEEEEeCCCCEE-------EEE--eeccCCCeeEEEE
Q 022716 150 YEVNEIAWNMTGEMFFLTTGNAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC-------VRT--FTKLEWPVRTISF 220 (293)
Q Consensus 150 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gs~d~~i~iwd~~~~~~-------~~~--~~~~~~~v~~l~~ 220 (293)
.+..+... ....+..+...+++.+++..+..|.++.-.+..... +.. +..-...+-.+..
T Consensus 188 -Gv~~i~L~----------~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~ 256 (327)
T 3uc1_A 188 -GVQGMRFN----------IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALI 256 (327)
T ss_dssp -CEESSCCC----------TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEE
T ss_pred -CeeeecCC----------CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEE
Confidence 12112111 223344555455667889999999988877543211 111 1111223444433
Q ss_pred ccCCCEEEEecCCCcEEEEEcC
Q 022716 221 SHTGDYIASASEDLFIDISNVH 242 (293)
Q Consensus 221 sp~~~~l~s~s~d~~i~iw~~~ 242 (293)
..+...++..+.+|.+..++..
T Consensus 257 ~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 257 VDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp ECTTCEEEEEEGGGCEEEEEGG
T ss_pred eCCCccEEEEcCCCeEEEEehh
Confidence 3344556666666666655543
No 373
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=21.69 E-value=3.6e+02 Score=23.99 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=37.3
Q ss_pred CEEEEecCCCcEEEE-eCCCC-----EEEEEee--ccCCCeeEEEEccCCCEEEEecCCCcEEEE
Q 022716 183 RYFAVGSADSLVSLW-DISEM-----LCVRTFT--KLEWPVRTISFSHTGDYIASASEDLFIDIS 239 (293)
Q Consensus 183 ~~l~~gs~d~~i~iw-d~~~~-----~~~~~~~--~~~~~v~~l~~sp~~~~l~s~s~d~~i~iw 239 (293)
..+..|+++|.|+=. ..... ..+.++. ....+|..+.++++..+|..++.++.+++-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 356788999987533 22222 1223332 234689999999999999888887766553
No 374
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=20.65 E-value=16 Score=25.86 Aligned_cols=11 Identities=18% Similarity=0.700 Sum_probs=8.0
Q ss_pred ceEEEEeeecC
Q 022716 283 GVFRIYGFENA 293 (293)
Q Consensus 283 ~~~~~~~~~~~ 293 (293)
.-||||++||+
T Consensus 98 ~~mKIWs~EKl 108 (151)
T 3oq0_A 98 NYMKVWSYEKA 108 (151)
T ss_dssp TTCEEEEHHHH
T ss_pred cCCeeecHHHH
Confidence 34888888873
No 375
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=20.32 E-value=16 Score=26.06 Aligned_cols=11 Identities=18% Similarity=0.700 Sum_probs=8.6
Q ss_pred ceEEEEeeecC
Q 022716 283 GVFRIYGFENA 293 (293)
Q Consensus 283 ~~~~~~~~~~~ 293 (293)
..||||+||++
T Consensus 136 ~~mKVW~yeK~ 146 (160)
T 3qbz_A 136 NYMKVWSYEKA 146 (160)
T ss_dssp TTCEEEEHHHH
T ss_pred cCceecchHHH
Confidence 46899999874
No 376
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=20.26 E-value=3.5e+02 Score=21.96 Aligned_cols=27 Identities=7% Similarity=-0.197 Sum_probs=16.2
Q ss_pred CeeEEEEcCCC-CCEEEEEeCCCeEEEE
Q 022716 68 SVDQLCWDPKH-ADLIATASGDKTVRLW 94 (293)
Q Consensus 68 ~i~~~~~~~~~-~~~l~s~~~d~~i~vw 94 (293)
.|.++.+.|.+ ...++.++..+.|...
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 47778887643 3455556656655544
Done!