BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022717
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 308 bits (789), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 138/286 (48%), Positives = 194/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDS+ YRPVDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHHSTSDDSSAYRPVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 305 bits (780), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 193/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 305 bits (780), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 192/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHHNTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 304 bits (779), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 192/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHHQTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 304 bits (779), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 192/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHHETSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 192/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHHXTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 304 bits (778), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 193/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHHSTSDDSSAYRSVDEVGYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 304 bits (778), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 192/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHHDTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 303 bits (777), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 194/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
+ RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGAAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GHH+TSDDS+ +R VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHHSTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 301 bits (771), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 136/286 (47%), Positives = 192/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GH +TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 300 bits (769), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 192/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQFREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GH +TSDDS+ +R VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 300 bits (769), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 193/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
+ RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGAYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GH +TSDDS+ +R VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 300 bits (768), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 192/286 (67%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GH +TSDDS+ +R VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 300 bits (767), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 135/281 (48%), Positives = 192/281 (68%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+P AVG
Sbjct: 114 REAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVG 173
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AISTP S+Q
Sbjct: 174 AAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQ 233
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187
+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+GH +T
Sbjct: 234 YRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHAST 293
Query: 188 SDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAE 247
SDDS+ +R VDE+ +W P++R R ++ S GWW+ + E R R++++ A ++AE
Sbjct: 294 SDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAE 353
Query: 248 KAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 354 RKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 135/286 (47%), Positives = 191/286 (66%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TY +
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYAI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GH +TSDDS+ YR VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 297 bits (760), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 191/286 (66%)
Query: 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 62
RE GVL++R + ++ F QC+GN +D GKGRQMP+HYG + ++ T+SS +ATQ+
Sbjct: 109 VFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQI 168
Query: 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 122
P AVGAAYA K + + YFG+G SEGD HA NF+A E P+IF CRNNG+AIST
Sbjct: 169 PQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAIST 228
Query: 123 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182
P S+Q+R DG +G YG+ SIRVDGND A+Y+A AR A+ E +P LIEA+TYR+
Sbjct: 229 PTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRI 288
Query: 183 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242
GH +TS DS+ +R VDE+ +W P++R R ++ S GWW+ + E R R++++ A
Sbjct: 289 GHASTSADSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEA 348
Query: 243 LQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288
++AE+ KP + LF+DVY P+ LR+Q+ SL ++ + + YP
Sbjct: 349 FEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 394
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 211 bits (538), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 118/274 (43%), Positives = 165/274 (60%), Gaps = 3/274 (1%)
Query: 8 REPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVG 67
R+ G+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A G
Sbjct: 96 RDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAG 155
Query: 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 127
AA ++K+ R AV FGDG TSEGD++A +NF+AV AP +FI NN +AIS Q
Sbjct: 156 AAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQ 215
Query: 128 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRVGHHT 186
S K A+G+ VDG D LA Y V A E A GEG P L+E YR G H+
Sbjct: 216 THSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEG-PSLVELRVYRYGPHS 274
Query: 187 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 246
++DD ++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+EA
Sbjct: 275 SADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEA 333
Query: 247 EKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 280
E+A P +F DV+ P +L QE L+E +
Sbjct: 334 EEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 183 bits (465), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 158/278 (56%), Gaps = 15/278 (5%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
L R+ ++W G + Q F + G Q+P N I Q
Sbjct: 100 LPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYI 150
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
A G A LKM K A A+TY GDGGTS+GDF+ +NF+ +AP IF+ +NN +AISTP
Sbjct: 151 QAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTP 210
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI-GEGRPILIEALTYRV 182
+ Q + K A G+ I+VDG D LA+Y+AV AARE AI GEG P LIE L +R
Sbjct: 211 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEG-PTLIETLCFRY 269
Query: 183 GHHTTS-DDSTKYRPVD-EIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240
G HT S DD T+YR + E EW + +DP+ RFRK++E+ G W+ + E+ + +++I
Sbjct: 270 GPHTMSGDDPTRYRSKELENEWAK--KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK 327
Query: 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRE 278
A+++A++ K ++DL + +++ P NL+EQ +E
Sbjct: 328 EAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKE 365
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 183 bits (465), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 108/278 (38%), Positives = 158/278 (56%), Gaps = 15/278 (5%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
L R+ ++W G + Q F + G Q+P N I Q
Sbjct: 99 LPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYI 149
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
A G A LKM K A A+TY GDGGTS+GDF+ +NF+ +AP IF+ +NN +AISTP
Sbjct: 150 QAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTP 209
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI-GEGRPILIEALTYRV 182
+ Q + K A G+ I+VDG D LA+Y+AV AARE AI GEG P LIE L +R
Sbjct: 210 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEG-PTLIETLCFRY 268
Query: 183 GHHTTS-DDSTKYRPVD-EIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240
G HT S DD T+YR + E EW + +DP+ RFRK++E+ G W+ + E+ + +++I
Sbjct: 269 GPHTMSGDDPTRYRSKELENEWAK--KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK 326
Query: 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRE 278
A+++A++ K ++DL + +++ P NL+EQ +E
Sbjct: 327 EAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKE 364
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 158/278 (56%), Gaps = 15/278 (5%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
L R+ ++W G + Q F + G Q+P N I Q
Sbjct: 99 LPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYI 149
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
A G A LKM K A A+TY GDGGTS+G+F+ +NF+ +AP IF+ +NN +AISTP
Sbjct: 150 QAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNRFAISTP 209
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI-GEGRPILIEALTYRV 182
+ Q + K A G+ I+VDG D LA+Y+AV AARE AI GEG P LIE L +R
Sbjct: 210 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEG-PTLIETLCFRY 268
Query: 183 GHHTTS-DDSTKYRPVD-EIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240
G HT S DD T+YR + E EW + +DP+ RFRK++E+ G W+ + E+ + +++I
Sbjct: 269 GPHTMSGDDPTRYRSKELENEWAK--KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK 326
Query: 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRE 278
A+++A++ K ++DL + +++ P NL+EQ +E
Sbjct: 327 EAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKE 364
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 157/278 (56%), Gaps = 15/278 (5%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
L R+ ++W G + Q F + G Q+P N I Q
Sbjct: 100 LPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGNQIP-----EGVNVLPPQIIIGAQYI 150
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
A G A LKM K A A+TY GDGGTS+GDF+ +NF+ +AP IF+ +NN +A STP
Sbjct: 151 QAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAASTP 210
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI-GEGRPILIEALTYRV 182
+ Q + K A G+ I+VDG D LA+Y+AV AARE AI GEG P LIE L +R
Sbjct: 211 VEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEG-PTLIETLCFRY 269
Query: 183 GHHTTS-DDSTKYRPVD-EIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240
G HT S DD T+YR + E EW + +DP+ RFRK++E+ G W+ + E+ + +++I
Sbjct: 270 GPHTMSGDDPTRYRSKELENEWAK--KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIK 327
Query: 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRE 278
A+++A++ K ++DL + +++ P NL+EQ +E
Sbjct: 328 EAIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKE 365
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 167 bits (422), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/279 (36%), Positives = 143/279 (51%), Gaps = 10/279 (3%)
Query: 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHA 65
+ R+ +L+ R S+ E Q N+ D KGRQ+PI Y + +FT+S +ATQ A
Sbjct: 132 TYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQA 191
Query: 66 VGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 125
VG A A + A + GDG T+E DFH AL F+ V APVI NN WAIST
Sbjct: 192 VGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAIST-FQ 250
Query: 126 DQFRSDGAVVKGRAY--GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
+ GR G+ S+RVDGND +A+Y+A A E A P LIE +TYR G
Sbjct: 251 AIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAG 310
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
H+TSDD +KYRP D+ + DP+ R ++ + G W+ + + ++ A
Sbjct: 311 PHSTSDDPSKYRPADDWSHF-PLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQ 369
Query: 244 QEAEK------AEKPPISDLFTDVYDVSPSNLREQEHSL 276
+EAE+ P + +F DVY P +LR Q L
Sbjct: 370 KEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 408
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 145/281 (51%), Gaps = 14/281 (4%)
Query: 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHA 65
+ R+ +L R S+ E Q N+ D KGRQ+PI Y + +FT+S +ATQ A
Sbjct: 131 TYRQQSILXARDVSLVEXICQLLSNERDPLKGRQLPIXYSVREAGFFTISGNLATQFVQA 190
Query: 66 VG--AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
VG A A+K D K A A + GDG T+E DFH AL F+ V APVI NN WAIST
Sbjct: 191 VGWAXASAIKGDTKIASA--WIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAIST- 247
Query: 124 ISDQFRSDGAVVKGRAY--GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181
+ GR G+ S+RVDGND +A+Y+A A E A P LIE +TYR
Sbjct: 248 FQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYR 307
Query: 182 VGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241
G H+TSDD +KYRP D+ + DP+ R ++ + G W+ + + ++
Sbjct: 308 AGPHSTSDDPSKYRPADDWSHF-PLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIA 366
Query: 242 ALQEAEK------AEKPPISDLFTDVYDVSPSNLREQEHSL 276
A +EAE+ P + F DVY P +LR Q L
Sbjct: 367 AQKEAEQYGTLANGHIPSAASXFEDVYKEXPDHLRRQRQEL 407
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 123/263 (46%), Gaps = 4/263 (1%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+++ R G RG S++E + G K KG+ +H + N++ + + Q+P
Sbjct: 107 ITAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
G A A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T
Sbjct: 165 LGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTS 224
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
+ S +G + +RVDG D L + A A PIL+E TYR
Sbjct: 225 VERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 282
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
H+ SD YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A
Sbjct: 283 GHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAA 342
Query: 244 QEAEKAEKPPISDLFTDVYDVSP 266
Q A +PP+ +L +Y P
Sbjct: 343 QFATADPEPPLEELGYHIYSSDP 365
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 123/263 (46%), Gaps = 4/263 (1%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+++ R G RG S++E + G K KG+ +H + N++ + + Q+P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
G A A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T
Sbjct: 165 LGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTS 224
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
+ S +G + +RVDG D L + A A PIL+E TYR
Sbjct: 225 VERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 282
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
H+ SD YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A
Sbjct: 283 GHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAA 342
Query: 244 QEAEKAEKPPISDLFTDVYDVSP 266
Q A +PP+ +L +Y P
Sbjct: 343 QFATADPEPPLEELGYHIYSSDP 365
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 123/263 (46%), Gaps = 4/263 (1%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+++ R G RG S++E + G K KG+ +H + N++ + + Q+P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
G A A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T
Sbjct: 165 LGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTA 224
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
+ S +G + +RVDG D L + A A PIL+E TYR
Sbjct: 225 VERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 282
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
H+ SD YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A
Sbjct: 283 GHSMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAA 342
Query: 244 QEAEKAEKPPISDLFTDVYDVSP 266
Q A +PP+ +L +Y P
Sbjct: 343 QFATADPEPPLEELGYHIYSSDP 365
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 4/263 (1%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+++ R G RG S++E + G K KG+ +H + N++ + + Q+P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
G A A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T
Sbjct: 165 LGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTA 224
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
+ S +G + +RVDG D L + A A PIL+E TYR
Sbjct: 225 VERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 282
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
H SD YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A
Sbjct: 283 GHXMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAA 342
Query: 244 QEAEKAEKPPISDLFTDVYDVSP 266
Q A +PP+ +L +Y P
Sbjct: 343 QFATADPEPPLEELGYHIYSSDP 365
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 122/263 (46%), Gaps = 4/263 (1%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+++ R G RG S++E + G K KG+ +H + N++ + + Q+P
Sbjct: 90 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 147
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
G A A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T
Sbjct: 148 LGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTS 207
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
+ S +G + +RVDG D L + A A PIL+E TYR
Sbjct: 208 VERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYH 265
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
H SD YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A
Sbjct: 266 GHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAA 325
Query: 244 QEAEKAEKPPISDLFTDVYDVSP 266
Q A +PP+ +L +Y P
Sbjct: 326 QFATADPEPPLEELGYHIYSSDP 348
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 119/263 (45%), Gaps = 4/263 (1%)
Query: 4 LSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 63
+++ R G RG S++E + G K KG+ H + N++ + + Q+P
Sbjct: 90 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHXYAK--NFYGGNGIVGAQVP 147
Query: 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
G A A K + KD +T +GDG ++G A N +A+ + P IFIC NN + T
Sbjct: 148 LGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFICENNRYGXGTS 207
Query: 124 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183
+ S +G + +RVDG D L + A A PIL E TYR
Sbjct: 208 VERAAASTDYYKRGDF--IPGLRVDGXDILCVREATRFAAAYCRSGKGPILXELQTYRYH 265
Query: 184 HHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243
H+ SD YR +EI+ R+ DP+ + ++ + + E+ VRK+I A
Sbjct: 266 GHSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXVNSNLASVEELKEIDVEVRKEIEDAA 325
Query: 244 QEAEKAEKPPISDLFTDVYDVSP 266
Q A +PP+ +L +Y P
Sbjct: 326 QFATADPEPPLEELGYHIYSSDP 348
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 53 TVSSTIATQLPHAVGAAYALKM----------DRKDACAVTYFGDGGTSEGDFHAALNFS 102
T + + + +AVG A A K D D + GDG EG H + +
Sbjct: 110 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLA 169
Query: 103 AVTE-APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVH 160
+ +I +NG +I + F D A+ + AYG IR +DG+DA +I AV
Sbjct: 170 GTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAM-RFEAYGWHVIRDIDGHDAASIKRAVE 228
Query: 161 AAR 163
AR
Sbjct: 229 EAR 231
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 53 TVSSTIATQLPHAVGAAYALKM----------DRKDACAVTYFGDGGTSEGDFHAALNFS 102
T + + + +AVG A A K D D + GDG EG H + +
Sbjct: 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLA 170
Query: 103 AVTE-APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVH 160
+ +I +NG +I + F D A+ + AYG IR +DG+DA +I AV
Sbjct: 171 GTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAM-RFEAYGWHVIRDIDGHDAASIKRAVE 229
Query: 161 AAR 163
AR
Sbjct: 230 EAR 232
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 47 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 106
++H+ TV +T L +A+G A A KD GDG + G AALN
Sbjct: 115 SEHDAITVGHA-STSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMG 173
Query: 107 APVIFICRNNGWAIS 121
++ + +N +IS
Sbjct: 174 RKMLIVLNDNEMSIS 188
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 55 SSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFI 112
+ ++ L A G AY K D+ GDG SEG A+ F+++ + ++ I
Sbjct: 120 TGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAI 179
Query: 113 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 172
N S P Q + D + A+G +I VDG+ + A A+ +P
Sbjct: 180 LDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKH------QP 233
Query: 173 ILIEALTYR 181
I A T++
Sbjct: 234 TAIIAKTFK 242
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 55 SSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFI 112
+ ++ L A G AY K D+ GDG SEG A+ F+++ + ++ I
Sbjct: 118 TGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAI 177
Query: 113 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 172
N S P Q + D + A+G +I VDG+ + A A+ +P
Sbjct: 178 LDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKH------QP 231
Query: 173 ILIEALTYR 181
I A T++
Sbjct: 232 TAIIAKTFK 240
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 115 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 167
N+GWA +Q + DG +++ R +G + I +DG+D A+ AR+ I
Sbjct: 24 NDGWAAVEKRFNQLQVDGVLLRSR-FG-KCIGMDGSDEFAVQMFDSLARKRGI 74
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 58 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG--------------DFHAALNFSA 103
+ T + VGA + LK + A A + GDGGT G D H+A FSA
Sbjct: 192 MVTGIQGDVGADF-LKGSNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYFSA 250
Query: 104 VTEAPVIFICRNNGW----------AISTPISDQFRSDGAVV 135
+ + + N W ++ + +Q DG VV
Sbjct: 251 INQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVV 292
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 58 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG--------------DFHAALNFSA 103
+ T + VGA + LK + A A + GDGGT G D H+A FSA
Sbjct: 192 MVTGIQGDVGADF-LKGSNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYFSA 250
Query: 104 VTEAPVIFICRNNGW----------AISTPISDQFRSDGAVV 135
+ + + N W ++ + +Q DG VV
Sbjct: 251 INQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVV 292
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 71 ALKMDRKDACAVTYFGDGGTS-----EGDFHAALNFSAVTEAPVIFICRNNGWAISTP 123
A +D K A AV+ G G S GD HA L+FS+ T+ P + + A +TP
Sbjct: 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ-PATVLALDPATAKTTP 446
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 110 IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 169
I I NN +T +D S+ + G V+G+D A A +
Sbjct: 313 IHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAF 372
Query: 170 GRPILIEALTYRVGHHTTSDDSTKYRP 196
+ ++I+ L YR H DD + +P
Sbjct: 373 KKDVVIDMLCYRRRGHNEGDDPSMTQP 399
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 110 IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 169
I I NN +T +D S+ + G V+G+D A A +
Sbjct: 558 IHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAF 617
Query: 170 GRPILIEALTYRVGHHTTSDDSTKYRP 196
+ ++I+ L YR H DD + +P
Sbjct: 618 KKDVVIDMLCYRRRGHNEGDDPSMTQP 644
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,382,729
Number of Sequences: 62578
Number of extensions: 393419
Number of successful extensions: 1112
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 46
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)