Query 022717
Match_columns 293
No_of_seqs 245 out of 2302
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 6.5E-78 1.4E-82 558.8 27.4 275 2-277 82-357 (358)
2 PLN02269 Pyruvate dehydrogenas 100.0 8.1E-68 1.8E-72 498.4 27.8 261 2-265 84-344 (362)
3 CHL00149 odpA pyruvate dehydro 100.0 6.5E-67 1.4E-71 490.3 29.2 261 2-264 74-341 (341)
4 KOG1182 Branched chain alpha-k 100.0 1.5E-68 3.2E-73 478.2 16.4 290 2-291 139-429 (432)
5 TIGR03182 PDH_E1_alph_y pyruva 100.0 8.2E-67 1.8E-71 485.6 27.6 260 2-263 56-315 (315)
6 PF00676 E1_dh: Dehydrogenase 100.0 4.6E-66 9.9E-71 477.5 24.1 253 2-255 48-300 (300)
7 KOG0225 Pyruvate dehydrogenase 100.0 2.6E-66 5.7E-71 467.1 19.8 261 3-267 114-374 (394)
8 PLN02374 pyruvate dehydrogenas 100.0 9.2E-65 2E-69 486.4 29.2 263 2-266 140-409 (433)
9 TIGR03181 PDH_E1_alph_x pyruva 100.0 9.3E-64 2E-68 469.6 28.5 265 2-276 77-341 (341)
10 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 1.4E-61 3E-66 446.8 28.0 244 2-246 50-293 (293)
11 PRK09404 sucA 2-oxoglutarate d 100.0 1.7E-54 3.6E-59 444.3 29.7 286 2-291 245-565 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 1.6E-53 3.4E-58 435.5 29.6 289 2-291 245-566 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 2.4E-47 5.1E-52 343.8 18.8 195 2-196 42-262 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 2.8E-36 6E-41 302.9 28.4 289 2-291 550-869 (1228)
15 KOG0450 2-oxoglutarate dehydro 100.0 3.5E-30 7.6E-35 250.1 19.6 288 2-291 306-631 (1017)
16 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.8E-30 3.9E-35 259.3 18.3 170 5-186 70-249 (581)
17 COG0567 SucA 2-oxoglutarate de 100.0 3.1E-28 6.8E-33 245.0 22.2 286 2-291 232-547 (906)
18 cd02012 TPP_TK Thiamine pyroph 100.0 6.5E-27 1.4E-31 211.9 19.3 168 13-189 67-236 (255)
19 KOG0451 Predicted 2-oxoglutara 100.0 1.7E-27 3.7E-32 227.1 15.6 286 2-291 214-544 (913)
20 COG3959 Transketolase, N-termi 99.9 6.1E-27 1.3E-31 202.7 16.4 160 13-181 81-242 (243)
21 PRK12754 transketolase; Review 99.9 7.9E-26 1.7E-30 227.9 24.9 161 16-187 78-253 (663)
22 cd02007 TPP_DXS Thiamine pyrop 99.9 1.6E-26 3.4E-31 201.5 16.9 160 6-184 33-194 (195)
23 TIGR00232 tktlase_bact transke 99.9 1.2E-25 2.7E-30 227.2 25.3 162 15-188 73-250 (653)
24 PRK12753 transketolase; Review 99.9 2E-25 4.3E-30 225.8 25.8 167 12-189 74-255 (663)
25 PTZ00089 transketolase; Provis 99.9 7.3E-26 1.6E-30 229.2 21.3 189 6-204 67-276 (661)
26 PRK05899 transketolase; Review 99.9 3.4E-25 7.3E-30 223.6 20.8 183 10-203 76-275 (624)
27 PLN02790 transketolase 99.9 7.1E-25 1.5E-29 221.7 20.2 175 5-190 54-248 (654)
28 PF00456 Transketolase_N: Tran 99.9 5.2E-25 1.1E-29 205.7 17.5 150 36-189 90-252 (332)
29 cd02017 TPP_E1_EcPDC_like Thia 99.9 2.3E-23 4.9E-28 196.0 20.8 173 5-186 66-323 (386)
30 PRK05444 1-deoxy-D-xylulose-5- 99.9 7.2E-24 1.6E-28 212.3 16.7 170 6-188 75-250 (580)
31 COG0021 TktA Transketolase [Ca 99.9 3.8E-22 8.2E-27 195.0 24.6 161 16-187 82-255 (663)
32 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 2.4E-23 5.2E-28 209.4 15.9 170 5-188 68-282 (617)
33 cd02011 TPP_PK Thiamine pyroph 99.9 1.3E-22 2.8E-27 179.2 14.0 136 21-167 34-174 (227)
34 TIGR00759 aceE pyruvate dehydr 99.9 9.2E-21 2E-25 192.3 20.6 165 15-186 150-394 (885)
35 TIGR03186 AKGDH_not_PDH alpha- 99.9 1.4E-20 3.1E-25 192.7 21.7 165 16-187 151-395 (889)
36 PRK12571 1-deoxy-D-xylulose-5- 99.9 4.7E-21 1E-25 193.6 17.4 171 6-188 77-291 (641)
37 PLN02234 1-deoxy-D-xylulose-5- 99.9 1.2E-20 2.7E-25 188.9 17.0 174 6-190 135-331 (641)
38 PRK11864 2-ketoisovalerate fer 99.8 1.7E-19 3.7E-24 165.7 18.1 232 6-247 14-297 (300)
39 PLN02582 1-deoxy-D-xylulose-5- 99.8 9E-20 1.9E-24 184.0 17.5 172 6-188 102-328 (677)
40 cd02013 TPP_Xsc_like Thiamine 99.8 4E-20 8.7E-25 161.2 12.7 156 18-182 4-181 (196)
41 KOG0523 Transketolase [Carbohy 99.8 9.4E-20 2E-24 176.5 16.4 164 11-185 79-246 (632)
42 PRK13012 2-oxoacid dehydrogena 99.8 2.7E-19 5.9E-24 184.0 20.1 165 15-186 164-408 (896)
43 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 9.9E-20 2.1E-24 155.3 12.6 113 55-179 47-171 (172)
44 cd02006 TPP_Gcl Thiamine pyrop 99.8 1.6E-19 3.5E-24 158.1 12.6 158 17-182 7-196 (202)
45 PRK09405 aceE pyruvate dehydro 99.8 1.7E-18 3.7E-23 177.6 20.3 164 15-185 156-399 (891)
46 cd00568 TPP_enzymes Thiamine p 99.8 3.2E-19 7E-24 150.5 11.9 114 54-179 44-168 (168)
47 cd02002 TPP_BFDC Thiamine pyro 99.8 3.4E-19 7.4E-24 152.6 10.7 119 49-179 41-178 (178)
48 cd02014 TPP_POX Thiamine pyrop 99.8 1.3E-18 2.8E-23 149.4 12.6 115 55-181 50-174 (178)
49 cd02008 TPP_IOR_alpha Thiamine 99.8 2.3E-18 4.9E-23 148.0 14.0 121 50-179 45-176 (178)
50 cd02010 TPP_ALS Thiamine pyrop 99.8 2.1E-18 4.7E-23 148.1 12.7 121 49-181 39-171 (177)
51 PRK06163 hypothetical protein; 99.8 4.7E-18 1E-22 148.8 14.9 134 50-201 52-189 (202)
52 cd02003 TPP_IolD Thiamine pyro 99.8 1.9E-18 4.1E-23 151.8 11.3 122 49-182 39-186 (205)
53 cd02015 TPP_AHAS Thiamine pyro 99.8 3.1E-18 6.7E-23 148.0 12.5 121 49-181 41-175 (186)
54 cd03372 TPP_ComE Thiamine pyro 99.8 5.6E-18 1.2E-22 145.8 14.0 120 49-183 36-158 (179)
55 cd02001 TPP_ComE_PpyrDC Thiami 99.8 3.5E-18 7.7E-23 144.0 11.3 118 49-180 36-155 (157)
56 cd03371 TPP_PpyrDC Thiamine py 99.8 1.4E-17 3.1E-22 144.4 15.2 117 55-183 47-166 (188)
57 PRK05261 putative phosphoketol 99.8 9.9E-18 2.2E-22 170.1 15.0 142 39-184 125-287 (785)
58 cd02005 TPP_PDC_IPDC Thiamine 99.8 1.1E-17 2.3E-22 144.5 12.8 116 55-181 49-175 (183)
59 PF02775 TPP_enzyme_C: Thiamin 99.7 4.7E-18 1E-22 142.2 9.6 119 49-177 19-153 (153)
60 TIGR03846 sulfopy_beta sulfopy 99.7 2.4E-17 5.2E-22 142.1 12.3 118 49-181 36-157 (181)
61 PRK07524 hypothetical protein; 99.7 2.6E-17 5.7E-22 163.6 13.0 118 55-184 406-533 (535)
62 PRK08327 acetolactate synthase 99.7 3.7E-17 8E-22 163.8 13.7 157 18-180 385-567 (569)
63 COG0028 IlvB Thiamine pyrophos 99.7 2.5E-17 5.4E-22 163.8 12.2 152 19-182 360-533 (550)
64 cd02009 TPP_SHCHC_synthase Thi 99.7 2.4E-17 5.1E-22 141.3 10.2 118 49-179 42-174 (175)
65 TIGR01504 glyox_carbo_lig glyo 99.7 4.1E-17 9E-22 164.0 10.6 125 49-181 409-556 (588)
66 PRK07586 hypothetical protein; 99.7 1.5E-16 3.4E-21 157.3 13.5 150 18-179 337-514 (514)
67 PRK12474 hypothetical protein; 99.7 1.3E-16 2.8E-21 158.1 12.4 150 18-179 341-518 (518)
68 PRK07092 benzoylformate decarb 99.7 2.5E-16 5.4E-21 156.5 13.0 150 18-179 359-529 (530)
69 PRK06154 hypothetical protein; 99.7 2.5E-16 5.4E-21 157.7 12.9 155 18-181 381-556 (565)
70 PRK09124 pyruvate dehydrogenas 99.7 3.1E-16 6.7E-21 157.2 13.6 121 49-181 399-531 (574)
71 cd03376 TPP_PFOR_porB_like Thi 99.7 2.9E-16 6.3E-21 140.7 11.8 120 51-180 57-200 (235)
72 PRK11269 glyoxylate carboligas 99.7 1.5E-16 3.2E-21 160.1 11.0 119 55-181 418-557 (591)
73 PRK07418 acetolactate synthase 99.7 2.7E-16 5.9E-21 158.9 12.5 153 17-181 386-560 (616)
74 TIGR02418 acolac_catab acetola 99.7 2.6E-16 5.7E-21 156.6 12.2 116 55-182 407-532 (539)
75 cd03375 TPP_OGFOR Thiamine pyr 99.7 4.1E-16 8.9E-21 135.7 11.9 115 55-179 50-183 (193)
76 PRK08266 hypothetical protein; 99.7 2.8E-16 6E-21 156.5 12.3 118 55-184 401-529 (542)
77 TIGR03457 sulphoacet_xsc sulfo 99.7 4.3E-16 9.3E-21 156.4 12.9 156 18-182 381-559 (579)
78 PRK07064 hypothetical protein; 99.7 4.7E-16 1E-20 154.9 12.5 114 55-180 404-528 (544)
79 PRK09107 acetolactate synthase 99.7 5.2E-16 1.1E-20 156.3 12.9 152 18-181 380-555 (595)
80 PRK06725 acetolactate synthase 99.7 4.1E-16 8.9E-21 156.3 11.8 152 18-181 373-546 (570)
81 PRK06546 pyruvate dehydrogenas 99.7 6.9E-16 1.5E-20 154.9 13.4 122 49-182 399-532 (578)
82 PRK05858 hypothetical protein; 99.7 3.9E-16 8.4E-21 155.5 11.5 152 18-181 358-531 (542)
83 PRK06457 pyruvate dehydrogenas 99.7 6.6E-16 1.4E-20 154.1 13.1 153 17-181 346-520 (549)
84 PF13292 DXP_synthase_N: 1-deo 99.7 3.7E-16 8E-21 139.8 9.9 122 54-179 109-270 (270)
85 PRK08979 acetolactate synthase 99.7 4.3E-16 9.3E-21 156.2 11.1 153 18-181 372-547 (572)
86 TIGR03393 indolpyr_decarb indo 99.7 5.4E-16 1.2E-20 154.4 11.6 151 18-180 356-527 (539)
87 TIGR02720 pyruv_oxi_spxB pyruv 99.7 1E-15 2.3E-20 153.5 13.8 154 18-181 359-533 (575)
88 PRK07979 acetolactate synthase 99.7 8.6E-16 1.9E-20 154.1 13.1 155 18-181 372-549 (574)
89 PRK06466 acetolactate synthase 99.7 7.7E-16 1.7E-20 154.4 12.8 153 18-181 374-549 (574)
90 PRK08199 thiamine pyrophosphat 99.7 8E-16 1.7E-20 153.7 12.6 153 18-182 367-540 (557)
91 PRK07525 sulfoacetaldehyde ace 99.7 3.4E-16 7.4E-21 157.4 9.9 157 18-183 386-565 (588)
92 PRK06965 acetolactate synthase 99.6 5.2E-16 1.1E-20 156.0 11.0 153 18-181 388-563 (587)
93 PRK08322 acetolactate synthase 99.6 9.8E-16 2.1E-20 152.7 12.9 121 49-181 397-529 (547)
94 PRK06112 acetolactate synthase 99.6 1.2E-15 2.6E-20 153.1 13.4 152 18-181 387-561 (578)
95 PRK08273 thiamine pyrophosphat 99.6 1.2E-15 2.5E-20 153.8 12.9 155 17-182 365-548 (597)
96 PRK08611 pyruvate oxidase; Pro 99.6 1.2E-15 2.6E-20 153.1 12.6 152 18-181 359-531 (576)
97 PRK06882 acetolactate synthase 99.6 1.6E-15 3.4E-20 152.1 13.2 116 55-181 420-547 (574)
98 PRK06456 acetolactate synthase 99.6 8.7E-16 1.9E-20 153.9 11.4 152 18-181 372-546 (572)
99 CHL00099 ilvB acetohydroxyacid 99.6 1.3E-15 2.7E-20 153.2 12.5 153 17-181 382-556 (585)
100 PRK07710 acetolactate synthase 99.6 1.9E-15 4E-20 151.6 13.6 152 18-181 375-549 (571)
101 PLN02573 pyruvate decarboxylas 99.6 1.2E-15 2.7E-20 153.0 12.2 116 55-180 427-552 (578)
102 PLN02470 acetolactate synthase 99.6 1.5E-15 3.2E-20 152.7 12.7 122 48-181 416-558 (585)
103 PRK06048 acetolactate synthase 99.6 1.8E-15 3.9E-20 151.3 12.8 152 18-181 366-539 (561)
104 PRK08617 acetolactate synthase 99.6 1.9E-15 4.1E-20 150.8 12.8 115 55-181 413-537 (552)
105 COG1154 Dxs Deoxyxylulose-5-ph 99.6 3.3E-15 7.2E-20 145.9 13.5 130 54-187 113-286 (627)
106 PRK08978 acetolactate synthase 99.6 2.1E-15 4.6E-20 150.4 12.3 153 18-182 352-527 (548)
107 PRK08155 acetolactate synthase 99.6 3.2E-15 6.9E-20 149.6 13.4 121 49-181 410-544 (564)
108 TIGR03254 oxalate_oxc oxalyl-C 99.6 3.7E-15 8E-20 148.9 13.4 114 55-181 416-539 (554)
109 PRK08527 acetolactate synthase 99.6 4.1E-15 8.9E-20 148.8 13.6 153 18-182 365-540 (563)
110 cd02018 TPP_PFOR Thiamine pyro 99.6 2E-15 4.3E-20 135.5 9.8 120 54-180 62-203 (237)
111 TIGR03297 Ppyr-DeCO2ase phosph 99.6 1E-14 2.2E-19 138.2 15.1 118 54-183 219-339 (361)
112 TIGR00118 acolac_lg acetolacta 99.6 3.8E-15 8.3E-20 148.9 12.3 152 18-181 363-537 (558)
113 PRK09628 oorB 2-oxoglutarate-a 99.6 3.8E-15 8.3E-20 136.2 11.2 114 55-180 67-201 (277)
114 PRK07282 acetolactate synthase 99.6 3.5E-15 7.5E-20 149.5 11.2 151 18-181 369-542 (566)
115 PRK07789 acetolactate synthase 99.6 2.9E-15 6.2E-20 151.4 10.4 153 18-181 398-577 (612)
116 PRK09259 putative oxalyl-CoA d 99.6 8.9E-15 1.9E-19 146.6 13.5 114 55-181 423-547 (569)
117 PRK05778 2-oxoglutarate ferred 99.6 2E-14 4.3E-19 132.9 14.4 135 55-204 69-224 (301)
118 TIGR03394 indol_phenyl_DC indo 99.6 5.5E-15 1.2E-19 147.1 11.5 120 49-180 394-521 (535)
119 PRK06276 acetolactate synthase 99.6 7.6E-15 1.7E-19 147.6 12.4 121 49-181 410-544 (586)
120 PRK11869 2-oxoacid ferredoxin 99.6 1.2E-14 2.6E-19 132.9 11.8 116 55-179 59-192 (280)
121 PRK07449 2-succinyl-5-enolpyru 99.6 6.5E-15 1.4E-19 147.5 8.6 113 55-180 424-549 (568)
122 PRK11866 2-oxoacid ferredoxin 99.6 4E-14 8.8E-19 129.5 12.9 117 53-179 56-191 (279)
123 PLN02225 1-deoxy-D-xylulose-5- 99.5 3E-14 6.5E-19 143.7 11.3 128 54-183 187-367 (701)
124 PRK11867 2-oxoglutarate ferred 99.5 9.8E-14 2.1E-18 127.6 12.5 115 55-179 68-201 (286)
125 TIGR02177 PorB_KorB 2-oxoacid: 99.5 9.2E-14 2E-18 127.5 11.5 113 56-179 53-185 (287)
126 TIGR03336 IOR_alpha indolepyru 99.5 2.6E-13 5.7E-18 136.7 13.7 121 50-179 397-529 (595)
127 COG3961 Pyruvate decarboxylase 99.4 4.1E-13 8.8E-18 129.2 10.4 125 48-181 401-536 (557)
128 KOG1185 Thiamine pyrophosphate 99.4 5.6E-12 1.2E-16 120.3 13.3 124 47-181 419-561 (571)
129 PRK11865 pyruvate ferredoxin o 99.4 2.7E-11 5.8E-16 111.7 16.2 124 50-179 63-210 (299)
130 PLN02980 2-oxoglutarate decarb 99.4 2.4E-12 5.2E-17 142.3 10.4 115 54-181 757-890 (1655)
131 KOG4166 Thiamine pyrophosphate 99.2 6E-11 1.3E-15 111.8 8.8 153 18-182 472-649 (675)
132 PF09364 XFP_N: XFP N-terminal 99.1 3.2E-10 6.9E-15 105.6 10.4 122 38-163 122-248 (379)
133 COG2609 AceE Pyruvate dehydrog 99.1 2.6E-09 5.7E-14 105.9 16.4 186 36-230 170-435 (887)
134 KOG1184 Thiamine pyrophosphate 99.0 8.4E-10 1.8E-14 106.3 9.2 118 55-180 414-539 (561)
135 COG3962 Acetolactate synthase 99.0 1.2E-09 2.5E-14 104.2 9.6 116 55-182 443-577 (617)
136 COG3960 Glyoxylate carboligase 99.0 8.4E-10 1.8E-14 101.6 7.9 137 43-188 405-564 (592)
137 COG1013 PorB Pyruvate:ferredox 98.7 4.3E-07 9.4E-12 83.9 15.3 150 55-218 69-239 (294)
138 COG3957 Phosphoketolase [Carbo 98.5 4.7E-07 1E-11 90.4 9.5 117 38-159 135-257 (793)
139 COG4231 Indolepyruvate ferredo 98.3 3.2E-06 6.9E-11 83.9 9.0 114 54-178 426-552 (640)
140 cd03377 TPP_PFOR_PNO Thiamine 98.0 0.00029 6.3E-09 66.7 15.8 95 79-179 152-266 (365)
141 COG1165 MenD 2-succinyl-6-hydr 98.0 2.6E-05 5.6E-10 76.6 8.9 121 49-182 413-548 (566)
142 PRK13030 2-oxoacid ferredoxin 97.4 0.0011 2.5E-08 71.3 10.6 117 55-177 467-600 (1159)
143 cd06586 TPP_enzyme_PYR Pyrimid 97.2 0.0071 1.5E-07 49.7 12.1 104 62-177 48-152 (154)
144 TIGR02176 pyruv_ox_red pyruvat 97.2 0.0036 7.7E-08 68.1 12.9 96 79-180 952-1067(1165)
145 cd07035 TPP_PYR_POX_like Pyrim 97.2 0.0064 1.4E-07 50.4 11.7 106 61-177 46-153 (155)
146 PRK09193 indolepyruvate ferred 97.2 0.002 4.3E-08 69.4 10.4 118 55-178 480-615 (1165)
147 cd07039 TPP_PYR_POX Pyrimidine 97.1 0.0097 2.1E-07 50.3 12.2 106 63-178 52-157 (164)
148 cd07034 TPP_PYR_PFOR_IOR-alpha 96.9 0.011 2.3E-07 49.4 10.2 106 61-177 53-158 (160)
149 PRK13029 2-oxoacid ferredoxin 96.9 0.0065 1.4E-07 65.5 10.5 117 55-177 494-628 (1186)
150 PF02776 TPP_enzyme_N: Thiamin 96.8 0.014 2.9E-07 49.6 10.3 110 61-179 51-161 (172)
151 cd07038 TPP_PYR_PDC_IPDC_like 96.8 0.023 5E-07 47.9 11.4 108 61-177 47-160 (162)
152 TIGR03845 sulfopyru_alph sulfo 96.7 0.035 7.5E-07 46.7 12.1 108 59-178 44-153 (157)
153 cd07037 TPP_PYR_MenD Pyrimidin 96.1 0.044 9.5E-07 46.4 9.0 107 62-178 48-161 (162)
154 PRK08611 pyruvate oxidase; Pro 95.5 0.15 3.2E-06 51.6 11.7 108 62-179 56-163 (576)
155 COG0028 IlvB Thiamine pyrophos 95.5 0.14 3.1E-06 51.6 11.1 112 59-180 49-161 (550)
156 TIGR03254 oxalate_oxc oxalyl-C 95.4 0.15 3.3E-06 51.2 11.4 111 62-180 53-164 (554)
157 PRK07119 2-ketoisovalerate fer 95.4 0.1 2.3E-06 49.6 9.6 115 61-187 60-177 (352)
158 PRK08659 2-oxoglutarate ferred 95.4 0.14 3E-06 49.2 10.5 116 61-187 60-177 (376)
159 PRK07525 sulfoacetaldehyde ace 95.3 0.2 4.3E-06 50.8 11.7 107 63-179 57-163 (588)
160 PRK07524 hypothetical protein; 95.1 0.27 5.9E-06 49.2 11.9 112 61-180 51-164 (535)
161 PRK07064 hypothetical protein; 95.1 0.27 5.9E-06 49.2 11.8 109 63-179 55-165 (544)
162 PRK07979 acetolactate synthase 95.1 0.22 4.7E-06 50.4 11.1 108 63-180 56-164 (574)
163 PRK06457 pyruvate dehydrogenas 95.0 0.25 5.5E-06 49.6 11.5 108 63-180 53-160 (549)
164 PRK09259 putative oxalyl-CoA d 95.0 0.26 5.6E-06 49.8 11.6 109 63-179 61-170 (569)
165 TIGR03457 sulphoacet_xsc sulfo 95.0 0.25 5.4E-06 50.0 11.3 107 63-179 53-159 (579)
166 cd07033 TPP_PYR_DXS_TK_like Py 95.0 0.38 8.2E-06 40.1 10.6 100 61-177 51-154 (156)
167 TIGR03297 Ppyr-DeCO2ase phosph 94.9 0.18 3.8E-06 48.2 9.5 115 56-178 33-151 (361)
168 PRK08366 vorA 2-ketoisovalerat 94.9 0.28 6E-06 47.4 10.8 113 61-187 61-173 (390)
169 PRK06466 acetolactate synthase 94.8 0.26 5.6E-06 49.8 10.9 107 64-180 57-164 (574)
170 PRK06456 acetolactate synthase 94.8 0.29 6.3E-06 49.4 11.1 108 62-179 56-164 (572)
171 PRK08266 hypothetical protein; 94.7 0.35 7.6E-06 48.4 11.6 110 63-180 57-168 (542)
172 PRK06725 acetolactate synthase 94.7 0.28 6E-06 49.6 10.8 109 62-180 65-174 (570)
173 PRK06276 acetolactate synthase 94.7 0.35 7.7E-06 49.0 11.6 109 62-180 51-160 (586)
174 PRK08273 thiamine pyrophosphat 94.7 0.31 6.7E-06 49.5 11.2 108 63-180 56-164 (597)
175 PRK07418 acetolactate synthase 94.7 0.35 7.6E-06 49.3 11.6 108 62-179 73-181 (616)
176 PRK07586 hypothetical protein; 94.6 0.29 6.2E-06 48.7 10.6 109 62-180 52-161 (514)
177 PRK06112 acetolactate synthase 94.6 0.33 7.2E-06 49.0 11.2 108 63-180 63-171 (578)
178 PLN02470 acetolactate synthase 94.6 0.32 6.9E-06 49.3 11.0 109 62-180 64-173 (585)
179 PRK11269 glyoxylate carboligas 94.5 0.4 8.7E-06 48.7 11.6 109 63-180 56-165 (591)
180 TIGR01504 glyox_carbo_lig glyo 94.4 0.37 7.9E-06 49.0 11.0 109 63-180 55-164 (588)
181 PRK07789 acetolactate synthase 94.4 0.39 8.5E-06 48.9 11.2 109 62-180 82-191 (612)
182 PRK12474 hypothetical protein; 94.4 0.41 8.9E-06 47.7 11.1 108 63-180 57-165 (518)
183 PRK08978 acetolactate synthase 94.4 0.32 6.9E-06 48.8 10.4 108 62-179 51-159 (548)
184 PRK08322 acetolactate synthase 94.3 0.43 9.3E-06 47.8 11.2 109 62-180 51-160 (547)
185 PRK09107 acetolactate synthase 94.3 0.38 8.3E-06 48.9 10.9 109 62-180 62-171 (595)
186 PRK07710 acetolactate synthase 94.3 0.41 8.9E-06 48.3 10.9 112 59-180 63-175 (571)
187 TIGR00118 acolac_lg acetolacta 94.2 0.43 9.2E-06 48.0 11.0 108 63-180 53-161 (558)
188 PRK08199 thiamine pyrophosphat 94.1 0.46 1E-05 47.8 11.0 107 63-179 60-167 (557)
189 PRK08155 acetolactate synthase 94.1 0.49 1.1E-05 47.7 11.0 109 62-180 64-173 (564)
190 PRK08979 acetolactate synthase 94.1 0.48 1E-05 47.9 10.9 109 62-180 55-164 (572)
191 PRK06965 acetolactate synthase 94.0 0.6 1.3E-05 47.4 11.6 108 63-180 73-181 (587)
192 TIGR03394 indol_phenyl_DC indo 94.0 0.43 9.3E-06 47.9 10.3 109 64-180 53-165 (535)
193 PRK06882 acetolactate synthase 94.0 0.54 1.2E-05 47.5 11.1 108 63-180 56-164 (574)
194 PF01855 POR_N: Pyruvate flavo 93.9 0.32 6.9E-06 43.5 8.4 112 62-187 49-161 (230)
195 PRK09627 oorA 2-oxoglutarate-a 93.6 0.47 1E-05 45.6 9.4 115 61-187 59-176 (375)
196 PRK05858 hypothetical protein; 93.5 0.74 1.6E-05 46.2 11.2 109 62-180 55-164 (542)
197 PRK07282 acetolactate synthase 93.5 0.61 1.3E-05 47.1 10.5 109 62-180 61-170 (566)
198 TIGR02720 pyruv_oxi_spxB pyruv 93.4 0.84 1.8E-05 46.2 11.3 107 64-180 53-159 (575)
199 PRK06048 acetolactate synthase 93.3 0.74 1.6E-05 46.4 10.7 108 62-179 58-166 (561)
200 TIGR03710 OAFO_sf 2-oxoacid:ac 93.2 0.48 1.1E-05 47.9 9.3 112 61-181 249-362 (562)
201 PRK08617 acetolactate synthase 93.2 0.73 1.6E-05 46.3 10.5 107 64-180 57-164 (552)
202 PRK09622 porA pyruvate flavodo 93.2 1.1 2.3E-05 43.6 11.2 112 61-186 68-181 (407)
203 CHL00099 ilvB acetohydroxyacid 93.0 0.86 1.9E-05 46.2 10.8 108 63-180 65-173 (585)
204 PRK08327 acetolactate synthase 93.0 0.63 1.4E-05 47.0 9.8 109 63-179 64-180 (569)
205 PRK08527 acetolactate synthase 92.9 0.91 2E-05 45.8 10.8 109 62-180 54-163 (563)
206 TIGR02418 acolac_catab acetola 92.9 1 2.2E-05 45.1 10.9 107 64-180 51-158 (539)
207 PRK08367 porA pyruvate ferredo 92.7 0.95 2.1E-05 43.8 10.0 113 61-187 62-176 (394)
208 PRK09124 pyruvate dehydrogenas 92.6 1.1 2.5E-05 45.1 11.0 107 63-179 55-161 (574)
209 TIGR00204 dxs 1-deoxy-D-xylulo 92.4 1.1 2.5E-05 45.8 10.6 103 61-178 364-468 (617)
210 PRK06154 hypothetical protein; 92.3 1.4 3E-05 44.5 11.1 93 79-180 83-176 (565)
211 PRK07092 benzoylformate decarb 92.1 1.3 2.8E-05 44.3 10.6 109 63-180 62-171 (530)
212 PLN02573 pyruvate decarboxylas 92.1 1.3 2.9E-05 44.8 10.8 109 63-180 68-182 (578)
213 cd07036 TPP_PYR_E1-PDHc-beta_l 92.1 1.5 3.2E-05 37.2 9.5 100 61-176 56-164 (167)
214 TIGR00173 menD 2-succinyl-5-en 91.8 0.73 1.6E-05 44.9 8.2 108 63-180 52-166 (432)
215 PRK06546 pyruvate dehydrogenas 91.8 1.5 3.2E-05 44.5 10.6 107 64-180 56-162 (578)
216 PF02779 Transket_pyr: Transke 91.3 3.6 7.7E-05 35.0 11.0 107 61-178 60-171 (178)
217 TIGR00232 tktlase_bact transke 91.2 1.6 3.5E-05 45.0 10.3 83 89-178 430-513 (653)
218 TIGR03336 IOR_alpha indolepyru 90.5 2 4.3E-05 43.8 10.1 109 62-187 59-169 (595)
219 PRK11892 pyruvate dehydrogenas 90.3 2.5 5.5E-05 41.8 10.4 111 50-176 190-309 (464)
220 PTZ00089 transketolase; Provis 90.1 2.4 5.2E-05 43.8 10.5 104 62-178 416-520 (661)
221 PRK12571 1-deoxy-D-xylulose-5- 90.0 2.2 4.8E-05 43.9 10.1 101 62-178 374-477 (641)
222 PRK05444 1-deoxy-D-xylulose-5- 89.9 2.8 6.1E-05 42.6 10.6 102 62-177 334-436 (580)
223 PLN02683 pyruvate dehydrogenas 89.2 4.9 0.00011 38.3 11.1 112 49-177 74-195 (356)
224 PLN02234 1-deoxy-D-xylulose-5- 89.0 2.9 6.3E-05 43.0 9.9 100 62-176 412-513 (641)
225 PLN02225 1-deoxy-D-xylulose-5- 88.8 3.4 7.3E-05 42.9 10.3 103 61-178 435-539 (701)
226 cd01460 vWA_midasin VWA_Midasi 88.7 7.1 0.00015 35.8 11.3 84 80-164 166-257 (266)
227 PLN02582 1-deoxy-D-xylulose-5- 88.5 3.7 8.1E-05 42.5 10.4 101 62-177 411-513 (677)
228 PRK05899 transketolase; Review 88.2 4.4 9.5E-05 41.5 10.7 101 62-177 380-483 (624)
229 PLN02980 2-oxoglutarate decarb 87.1 2.7 5.9E-05 47.9 9.2 106 63-178 353-465 (1655)
230 COG0674 PorA Pyruvate:ferredox 87.0 5.7 0.00012 38.0 10.1 113 60-186 58-171 (365)
231 KOG4166 Thiamine pyrophosphate 86.9 4.4 9.6E-05 39.5 9.0 103 64-177 144-248 (675)
232 COG4032 Predicted thiamine-pyr 86.7 3.8 8.1E-05 34.0 7.3 109 59-177 52-161 (172)
233 PLN02790 transketolase 86.6 5.3 0.00011 41.3 10.3 79 94-178 431-510 (654)
234 PRK12315 1-deoxy-D-xylulose-5- 86.5 6 0.00013 40.3 10.5 101 62-177 333-434 (581)
235 PRK12753 transketolase; Review 86.3 5.5 0.00012 41.2 10.2 104 62-178 415-519 (663)
236 COG0021 TktA Transketolase [Ca 85.0 3.6 7.9E-05 41.9 7.8 80 94-178 440-519 (663)
237 TIGR03393 indolpyr_decarb indo 84.4 7.8 0.00017 38.8 10.1 109 61-180 51-166 (539)
238 PRK09212 pyruvate dehydrogenas 83.8 13 0.00028 35.0 10.7 104 60-179 62-174 (327)
239 PTZ00182 3-methyl-2-oxobutanat 83.6 13 0.00027 35.5 10.6 99 61-176 94-202 (355)
240 PRK12754 transketolase; Review 82.8 9.4 0.0002 39.5 10.0 104 62-178 415-519 (663)
241 PF09851 SHOCT: Short C-termin 78.9 4 8.7E-05 24.6 3.6 28 208-236 3-30 (31)
242 smart00861 Transket_pyr Transk 77.7 29 0.00062 28.8 9.8 100 62-177 62-164 (168)
243 COG3958 Transketolase, C-termi 77.1 19 0.00041 33.5 8.9 103 61-177 61-165 (312)
244 CHL00144 odpB pyruvate dehydro 77.1 28 0.00062 32.7 10.6 111 50-176 52-171 (327)
245 PF04273 DUF442: Putative phos 76.0 11 0.00023 29.8 6.3 46 131-179 47-95 (110)
246 COG1154 Dxs Deoxyxylulose-5-ph 72.7 23 0.00049 36.1 8.9 113 50-177 359-473 (627)
247 COG1240 ChlD Mg-chelatase subu 69.9 40 0.00087 30.7 9.1 98 57-161 149-258 (261)
248 PRK13683 hypothetical protein; 68.6 5.5 0.00012 29.9 2.8 40 140-183 13-52 (87)
249 COG1107 Archaea-specific RecJ- 67.7 8.2 0.00018 39.1 4.6 54 94-156 403-458 (715)
250 PRK07449 2-succinyl-5-enolpyru 66.9 28 0.0006 35.1 8.5 110 62-180 60-174 (568)
251 PRK11032 hypothetical protein; 66.9 21 0.00046 30.1 6.4 49 210-258 30-78 (160)
252 PF13519 VWA_2: von Willebrand 64.9 32 0.00069 27.6 7.1 91 60-161 78-171 (172)
253 COG2205 KdpD Osmosensitive K+ 64.9 30 0.00065 36.6 8.2 75 78-154 249-324 (890)
254 COG1303 Uncharacterized protei 64.5 20 0.00044 30.2 5.7 46 131-179 21-66 (179)
255 COG0108 RibB 3,4-dihydroxy-2-b 64.4 25 0.00054 30.8 6.5 69 75-148 121-192 (203)
256 cd01451 vWA_Magnesium_chelatas 63.0 81 0.0018 26.3 9.5 72 79-159 99-176 (178)
257 PRK10490 sensor protein KdpD; 61.3 34 0.00074 36.7 8.3 75 78-154 251-326 (895)
258 TIGR02176 pyruv_ox_red pyruvat 59.8 84 0.0018 34.9 11.0 112 62-186 64-175 (1165)
259 cd01453 vWA_transcription_fact 59.7 94 0.002 26.3 9.3 71 78-162 107-178 (183)
260 PRK13010 purU formyltetrahydro 55.9 87 0.0019 29.0 9.0 54 77-149 93-149 (289)
261 COG3960 Glyoxylate carboligase 55.7 37 0.0008 32.3 6.4 98 77-179 66-164 (592)
262 PLN02331 phosphoribosylglycina 55.2 78 0.0017 27.8 8.2 53 80-149 2-57 (207)
263 PF01380 SIS: SIS domain SIS d 52.7 38 0.00082 26.2 5.4 18 57-74 10-27 (131)
264 TIGR00506 ribB 3,4-dihydroxy-2 50.4 48 0.001 29.0 6.0 68 76-148 123-193 (199)
265 TIGR03186 AKGDH_not_PDH alpha- 50.4 1.7E+02 0.0036 31.6 11.0 117 56-178 566-689 (889)
266 PRK13685 hypothetical protein; 50.3 2E+02 0.0044 26.7 10.7 82 79-162 194-286 (326)
267 PRK00278 trpC indole-3-glycero 49.9 1.3E+02 0.0028 27.2 9.0 96 69-180 74-170 (260)
268 PRK06027 purU formyltetrahydro 49.3 1.6E+02 0.0036 27.0 9.7 55 76-149 88-145 (286)
269 PRK01792 ribB 3,4-dihydroxy-2- 49.1 61 0.0013 28.7 6.5 68 76-148 133-203 (214)
270 PRK05647 purN phosphoribosylgl 49.0 1.5E+02 0.0032 25.7 8.9 56 79-150 3-60 (200)
271 PF10925 DUF2680: Protein of u 48.8 66 0.0014 22.4 5.4 30 213-242 23-52 (59)
272 smart00115 CASc Caspase, inter 48.7 67 0.0015 28.6 6.9 70 108-177 9-79 (241)
273 PF00926 DHBP_synthase: 3,4-di 47.6 39 0.00084 29.5 5.0 86 58-148 90-188 (194)
274 KOG1184 Thiamine pyrophosphate 47.2 66 0.0014 32.3 6.9 97 79-180 68-170 (561)
275 PRK13406 bchD magnesium chelat 46.6 2E+02 0.0044 29.4 10.7 95 57-162 471-582 (584)
276 PF06707 DUF1194: Protein of u 45.6 2.1E+02 0.0046 25.2 9.4 96 60-163 95-198 (205)
277 COG0075 Serine-pyruvate aminot 45.2 93 0.002 30.1 7.6 13 79-91 56-68 (383)
278 cd05014 SIS_Kpsf KpsF-like pro 44.4 1.1E+02 0.0023 23.7 6.8 18 132-149 65-82 (128)
279 KOG1201 Hydroxysteroid 17-beta 43.7 2.8E+02 0.006 25.9 10.6 96 64-177 23-119 (300)
280 cd00032 CASc Caspase, interleu 42.7 91 0.002 27.7 6.8 69 108-177 10-80 (243)
281 TIGR00239 2oxo_dh_E1 2-oxoglut 42.5 2.1E+02 0.0045 31.1 10.3 107 61-177 659-772 (929)
282 PF08312 cwf21: cwf21 domain; 41.2 74 0.0016 21.0 4.4 30 211-241 14-43 (46)
283 PF14399 Transpep_BrtH: NlpC/p 41.2 1.9E+02 0.0041 26.3 8.9 44 133-180 55-98 (317)
284 TIGR00655 PurU formyltetrahydr 39.8 2.9E+02 0.0062 25.4 9.7 54 77-149 84-140 (280)
285 PF01738 DLH: Dienelactone hyd 39.5 1.8E+02 0.0038 24.8 8.0 16 175-190 178-193 (218)
286 TIGR02482 PFKA_ATP 6-phosphofr 39.3 71 0.0015 29.8 5.7 37 79-120 93-132 (301)
287 COG0769 MurE UDP-N-acetylmuram 38.6 3.2E+02 0.007 27.1 10.5 149 12-186 300-450 (475)
288 cd08323 CARD_APAF1 Caspase act 38.4 38 0.00082 25.5 3.0 26 210-235 16-41 (86)
289 PF10415 FumaraseC_C: Fumarase 38.3 38 0.00083 23.2 2.8 19 213-231 28-46 (55)
290 cd08325 CARD_CASP1-like Caspas 37.9 53 0.0011 24.4 3.8 38 206-243 14-51 (83)
291 TIGR03590 PseG pseudaminic aci 37.5 2.1E+02 0.0045 25.9 8.4 35 82-116 2-41 (279)
292 COG0498 ThrC Threonine synthas 37.0 1.6E+02 0.0036 28.7 7.9 81 65-164 115-195 (411)
293 PF00140 Sigma70_r1_2: Sigma-7 36.6 56 0.0012 20.3 3.2 34 208-241 2-35 (37)
294 cd05009 SIS_GlmS_GlmD_2 SIS (S 36.4 94 0.002 24.7 5.5 39 77-116 61-99 (153)
295 PRK00910 ribB 3,4-dihydroxy-2- 36.3 83 0.0018 28.0 5.3 68 76-148 134-204 (218)
296 COG2515 Acd 1-aminocyclopropan 36.2 1.7E+02 0.0037 27.5 7.5 109 78-204 63-175 (323)
297 PF06833 MdcE: Malonate decarb 36.2 3.1E+02 0.0068 24.7 9.0 39 78-116 28-74 (234)
298 PF08776 VASP_tetra: VASP tetr 35.1 99 0.0022 19.9 4.0 21 227-247 4-24 (40)
299 cd01987 USP_OKCHK USP domain i 35.1 2E+02 0.0043 21.8 7.4 62 90-153 11-74 (124)
300 cd00640 Trp-synth-beta_II Tryp 34.9 3.1E+02 0.0067 23.9 10.0 38 101-150 68-105 (244)
301 PF05014 Nuc_deoxyrib_tr: Nucl 34.5 81 0.0018 24.3 4.6 39 79-118 63-101 (113)
302 PRK12485 bifunctional 3,4-dihy 34.3 64 0.0014 31.0 4.6 68 76-148 123-193 (369)
303 TIGR00315 cdhB CO dehydrogenas 34.3 63 0.0014 27.3 4.1 37 78-114 27-63 (162)
304 PRK00014 ribB 3,4-dihydroxy-2- 34.2 1.9E+02 0.0042 25.9 7.3 68 76-148 138-208 (230)
305 TIGR01323 nitrile_alph nitrile 34.1 61 0.0013 27.9 3.9 27 211-237 4-30 (185)
306 PRK10886 DnaA initiator-associ 33.3 1.7E+02 0.0036 25.4 6.8 34 78-113 110-143 (196)
307 cd05710 SIS_1 A subgroup of th 33.3 1E+02 0.0022 24.0 5.1 38 77-116 47-84 (120)
308 COG0044 PyrC Dihydroorotase an 33.2 1.9E+02 0.0042 28.3 7.8 94 81-179 144-256 (430)
309 cd08326 CARD_CASP9 Caspase act 32.7 51 0.0011 24.6 3.0 24 211-234 19-42 (84)
310 PRK07328 histidinol-phosphatas 32.3 2.4E+02 0.0053 25.3 8.0 49 126-174 206-255 (269)
311 PF07295 DUF1451: Protein of u 31.9 1.2E+02 0.0025 25.3 5.2 41 208-248 18-58 (146)
312 COG4231 Indolepyruvate ferredo 31.6 1.8E+02 0.0039 30.0 7.4 48 136-187 134-181 (640)
313 PLN02522 ATP citrate (pro-S)-l 31.5 3.2E+02 0.007 28.2 9.3 86 77-168 221-319 (608)
314 PRK05772 translation initiatio 31.5 2.8E+02 0.0061 26.6 8.4 110 60-183 183-293 (363)
315 PF06570 DUF1129: Protein of u 30.9 1.1E+02 0.0024 26.5 5.3 38 207-245 7-44 (206)
316 PRK06988 putative formyltransf 30.8 2.5E+02 0.0055 26.1 8.0 59 81-148 4-62 (312)
317 KOG4426 Arginyl-tRNA synthetas 30.7 4.5E+02 0.0097 26.2 9.5 118 106-235 366-494 (656)
318 PRK07668 hypothetical protein; 30.5 1.6E+02 0.0035 26.8 6.3 37 208-245 8-44 (254)
319 COG3937 Uncharacterized conser 30.4 1.7E+02 0.0037 23.0 5.5 39 210-248 26-64 (108)
320 PF06506 PrpR_N: Propionate ca 30.0 1E+02 0.0023 25.8 4.9 86 77-167 75-168 (176)
321 PF00205 TPP_enzyme_M: Thiamin 30.0 25 0.00053 28.1 0.9 33 78-110 11-43 (137)
322 cd02991 UAS_ETEA UAS family, E 29.7 2.5E+02 0.0055 22.0 6.7 82 91-178 2-84 (116)
323 cd08327 CARD_RAIDD Caspase act 29.6 62 0.0014 24.7 3.0 24 211-234 24-47 (94)
324 COG0299 PurN Folate-dependent 29.6 3.9E+02 0.0084 23.5 8.7 80 79-179 2-87 (200)
325 PF02211 NHase_beta: Nitrile h 28.9 85 0.0018 28.0 4.2 26 200-231 69-94 (222)
326 cd05017 SIS_PGI_PMI_1 The memb 28.8 1.2E+02 0.0027 23.5 4.8 35 77-113 43-77 (119)
327 PRK00414 gmhA phosphoheptose i 28.7 1.7E+02 0.0037 25.1 6.0 39 76-116 110-148 (192)
328 cd08330 CARD_ASC_NALP1 Caspase 28.5 70 0.0015 23.7 3.1 27 209-235 16-42 (82)
329 PRK05720 mtnA methylthioribose 28.4 4.5E+02 0.0097 25.0 9.2 111 61-185 163-274 (344)
330 PF02979 NHase_alpha: Nitrile 28.2 73 0.0016 27.6 3.5 26 211-236 10-35 (188)
331 PRK13938 phosphoheptose isomer 28.2 1.7E+02 0.0036 25.4 5.9 41 75-117 111-151 (196)
332 PRK14019 bifunctional 3,4-dihy 28.1 1.3E+02 0.0027 29.0 5.5 68 76-148 123-193 (367)
333 cd01822 Lysophospholipase_L1_l 28.0 1.6E+02 0.0036 23.7 5.7 26 151-177 82-107 (177)
334 cd05007 SIS_Etherase N-acetylm 27.8 1.1E+02 0.0025 27.5 5.0 39 76-116 117-155 (257)
335 PF04695 Pex14_N: Peroxisomal 27.7 88 0.0019 25.4 3.8 31 208-239 21-51 (136)
336 PRK03353 ribB 3,4-dihydroxy-2- 27.7 1.9E+02 0.0041 25.7 6.2 66 76-148 133-203 (217)
337 TIGR02442 Cob-chelat-sub cobal 27.5 2.4E+02 0.0051 29.1 7.8 35 58-92 537-578 (633)
338 TIGR00441 gmhA phosphoheptose 27.5 1.2E+02 0.0026 24.8 4.7 39 76-116 78-116 (154)
339 cd05008 SIS_GlmS_GlmD_1 SIS (S 27.0 1.5E+02 0.0033 22.7 5.1 36 78-115 47-82 (126)
340 PF05209 MinC_N: Septum format 27.0 92 0.002 23.6 3.6 43 137-179 10-54 (99)
341 PRK09404 sucA 2-oxoglutarate d 26.8 5.1E+02 0.011 28.2 10.2 106 61-178 657-771 (924)
342 cd00763 Bacterial_PFK Phosphof 26.6 1.5E+02 0.0032 27.9 5.6 37 79-121 94-133 (317)
343 cd08332 CARD_CASP2 Caspase act 26.6 89 0.0019 23.5 3.4 25 210-234 22-46 (90)
344 PRK08558 adenine phosphoribosy 26.5 4E+02 0.0087 23.8 8.2 120 50-177 82-209 (238)
345 COG1063 Tdh Threonine dehydrog 26.5 4.1E+02 0.0089 24.9 8.7 54 61-118 150-204 (350)
346 PRK13936 phosphoheptose isomer 26.3 1.3E+02 0.0029 25.8 5.0 36 77-114 111-146 (197)
347 cd08329 CARD_BIRC2_BIRC3 Caspa 26.1 74 0.0016 24.2 2.9 29 208-236 23-51 (94)
348 KOG0369 Pyruvate carboxylase [ 26.1 1.9E+02 0.0041 30.4 6.4 32 79-112 159-190 (1176)
349 COG0777 AccD Acetyl-CoA carbox 25.9 1.1E+02 0.0023 28.4 4.3 62 55-117 131-206 (294)
350 PF02421 FeoB_N: Ferrous iron 25.9 1.7E+02 0.0037 24.4 5.3 69 78-152 78-146 (156)
351 PF10642 Tom5: Mitochondrial i 25.8 1.4E+02 0.0031 20.1 3.8 27 221-247 7-33 (49)
352 PRK13802 bifunctional indole-3 25.8 8E+02 0.017 25.8 11.2 196 68-286 73-308 (695)
353 PF02520 DUF148: Domain of unk 25.7 1.1E+02 0.0024 23.7 4.0 55 229-288 46-100 (113)
354 cd02958 UAS UAS family; UAS is 25.4 3E+02 0.0064 20.9 6.4 81 92-178 3-84 (114)
355 PF07615 Ykof: YKOF-related Fa 25.4 2.7E+02 0.0058 20.5 5.7 36 146-182 42-77 (81)
356 PF08640 U3_assoc_6: U3 small 25.2 1.2E+02 0.0025 22.7 3.7 42 215-261 9-50 (83)
357 PLN02569 threonine synthase 25.1 3.3E+02 0.0072 27.1 8.0 49 101-161 205-253 (484)
358 PF13899 Thioredoxin_7: Thiore 24.9 67 0.0015 23.1 2.4 18 161-178 8-25 (82)
359 cd00198 vWFA Von Willebrand fa 24.7 2.3E+02 0.005 21.7 5.8 35 78-112 101-137 (161)
360 PRK06555 pyrophosphate--fructo 24.6 2E+02 0.0043 28.1 6.1 40 79-120 114-158 (403)
361 TIGR03436 acidobact_VWFA VWFA- 24.6 5.2E+02 0.011 23.3 9.8 86 78-166 164-254 (296)
362 PLN03013 cysteine synthase 24.6 4.5E+02 0.0098 25.8 8.7 38 101-150 193-230 (429)
363 PRK01322 6-carboxyhexanoate--C 24.5 2.8E+02 0.006 25.1 6.6 76 94-178 157-241 (242)
364 COG1424 BioW Pimeloyl-CoA synt 24.5 2.7E+02 0.0059 24.5 6.2 76 95-179 154-238 (239)
365 cd01671 CARD Caspase activatio 24.5 1.1E+02 0.0023 21.8 3.5 28 208-235 13-40 (80)
366 PF04748 Polysacc_deac_2: Dive 24.4 2.9E+02 0.0063 24.2 6.8 45 133-178 133-182 (213)
367 PF04122 CW_binding_2: Putativ 24.2 2.9E+02 0.0063 20.2 6.2 44 67-113 12-57 (92)
368 PRK00945 acetyl-CoA decarbonyl 24.1 1E+02 0.0023 26.2 3.7 37 78-114 34-71 (171)
369 COG3707 AmiR Response regulato 24.1 3.2E+02 0.007 23.8 6.7 58 95-165 65-123 (194)
370 cd08785 CARD_CARD9-like Caspas 23.9 85 0.0018 23.6 2.8 26 211-236 19-44 (86)
371 PRK06740 histidinol-phosphatas 23.8 4.2E+02 0.009 24.9 8.1 45 126-170 269-314 (331)
372 PRK09311 bifunctional 3,4-dihy 23.6 1.8E+02 0.0038 28.4 5.6 71 77-154 125-198 (402)
373 TIGR01117 mmdA methylmalonyl-C 23.4 97 0.0021 31.1 3.9 12 107-118 155-166 (512)
374 cd01450 vWFA_subfamily_ECM Von 23.4 2.8E+02 0.0061 21.7 6.1 37 78-114 103-140 (161)
375 cd04141 Rit_Rin_Ric Rit/Rin/Ri 23.3 4.1E+02 0.0089 21.6 7.4 85 75-163 72-160 (172)
376 COG0205 PfkA 6-phosphofructoki 23.3 2E+02 0.0043 27.5 5.8 35 79-118 96-133 (347)
377 cd01467 vWA_BatA_type VWA BatA 22.9 4.2E+02 0.0091 21.5 8.3 37 78-114 102-140 (180)
378 TIGR03142 cytochro_ccmI cytoch 22.6 92 0.002 24.5 3.0 36 209-245 44-79 (117)
379 PF00009 GTP_EFTU: Elongation 22.3 2.3E+02 0.005 23.6 5.6 39 75-114 92-130 (188)
380 PRK01706 S-adenosylmethionine 22.3 1.2E+02 0.0026 24.4 3.5 40 140-185 15-54 (123)
381 PRK08535 translation initiatio 22.3 5.7E+02 0.012 23.7 8.7 45 140-186 194-238 (310)
382 PF00656 Peptidase_C14: Caspas 22.1 2.1E+02 0.0045 24.6 5.5 73 110-188 3-78 (248)
383 COG0532 InfB Translation initi 22.0 94 0.002 31.2 3.5 124 50-186 58-198 (509)
384 KOG1145 Mitochondrial translat 22.0 2.4E+02 0.0052 28.9 6.2 102 76-184 224-342 (683)
385 PLN02880 tyrosine decarboxylas 22.0 5.1E+02 0.011 25.7 8.7 69 133-224 194-272 (490)
386 PF00619 CARD: Caspase recruit 21.9 1.4E+02 0.0029 21.5 3.6 24 210-233 18-41 (85)
387 smart00114 CARD Caspase recrui 21.7 94 0.002 22.9 2.7 24 212-235 24-47 (88)
388 cd01452 VWA_26S_proteasome_sub 21.6 3.7E+02 0.0081 23.1 6.8 34 79-112 108-142 (187)
389 PRK14072 6-phosphofructokinase 21.5 1.6E+02 0.0034 28.8 4.9 40 79-120 105-149 (416)
390 TIGR02803 ExbD_1 TonB system t 21.4 4E+02 0.0087 20.8 6.7 49 66-114 72-120 (122)
391 PF06945 DUF1289: Protein of u 21.4 2E+02 0.0044 19.1 4.0 16 194-210 21-36 (51)
392 TIGR01235 pyruv_carbox pyruvat 21.4 1E+03 0.022 26.7 11.4 88 133-238 630-730 (1143)
393 TIGR01415 trpB_rel pyridoxal-p 21.2 7.7E+02 0.017 24.0 10.8 45 98-151 132-177 (419)
394 PF04431 Pec_lyase_N: Pectate 21.0 80 0.0017 21.9 2.0 30 231-260 5-34 (56)
395 PRK06381 threonine synthase; V 20.7 6.6E+02 0.014 23.0 10.1 41 98-150 77-118 (319)
396 PF03437 BtpA: BtpA family; I 20.6 6.5E+02 0.014 22.9 8.5 84 65-150 95-181 (254)
397 TIGR00515 accD acetyl-CoA carb 20.5 1.4E+02 0.003 27.6 4.1 43 78-120 119-169 (285)
398 PF00491 Arginase: Arginase fa 20.4 6.2E+02 0.013 22.6 8.4 101 77-182 79-211 (277)
399 TIGR01204 bioW 6-carboxyhexano 20.4 3.2E+02 0.007 24.5 6.2 74 94-176 150-232 (232)
400 COG3462 Predicted membrane pro 20.1 1.8E+02 0.004 23.0 4.0 23 213-236 94-116 (117)
401 PRK09932 glycerate kinase II; 20.1 4E+02 0.0087 25.8 7.2 34 81-114 286-324 (381)
402 PF04282 DUF438: Family of unk 20.1 3.2E+02 0.0069 19.8 5.0 34 210-244 34-67 (71)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.5e-78 Score=558.77 Aligned_cols=275 Identities=40% Similarity=0.662 Sum_probs=265.4
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCc-e
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 80 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~-~ 80 (293)
|+||+||||+++|++|+++.++|++++|+.+|+|+|+++++|++++..++++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred EEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHH
Q 022717 81 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 160 (293)
Q Consensus 81 vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~ 160 (293)
++|++|||+++||.|||+||+|+.|+|||||+|+||+|+||++.+.+.....++.++.+||+|+++|||||+.+|+++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877666667779999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 022717 161 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 240 (293)
+|++++|+++||+|||+.|||++|||++|||+.||+++|++.|+ .+|||.+++++|++.|+||++++++|+++++++|+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ 320 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVD 320 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccccccccCCCCccHHHHHHHHH
Q 022717 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 277 (293)
Q Consensus 241 ~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~ 277 (293)
+|+++|+++|.|+++++|++||++.|+++.+|.+.+.
T Consensus 321 ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~~q~~~~~ 357 (358)
T COG1071 321 EAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELE 357 (358)
T ss_pred HHHHHHHhCCCCChhHhhhcccccCChhHHHHHHhhc
Confidence 9999999999999999999999999999999988764
No 2
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=8.1e-68 Score=498.42 Aligned_cols=261 Identities=30% Similarity=0.492 Sum_probs=250.7
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||+|+++|++|+++.++|++++|+.+|+|+|+++++|+.+++.++++.++++|.++|+|+|+|+|.|+++.+.++
T Consensus 84 ~~~~~yR~hg~~la~G~~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~ 163 (362)
T PLN02269 84 AIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVA 163 (362)
T ss_pred EEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.|||+||+|+.|+||+||||+||+|+++++...+....++++++ +++|+++|||+|+.+|+++++.
T Consensus 164 v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~ 241 (362)
T PLN02269 164 FALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKF 241 (362)
T ss_pred EEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777777777544 6899999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|+ ++|+|||+.|||++|||++|++..||+++|++.|++++|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 242 A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~ 320 (362)
T PLN02269 242 AKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDD 320 (362)
T ss_pred HHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999998779999999999975699999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccCCC
Q 022717 242 ALQEAEKAEKPPISDLFTDVYDVS 265 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~~~ 265 (293)
++++|+++|.|+++++|+|||+++
T Consensus 321 a~~~A~~~p~P~~~~~~~~vy~~~ 344 (362)
T PLN02269 321 AVAKAKESPMPDPSELFTNVYVKG 344 (362)
T ss_pred HHHHHHhCCCCCHHHHHhhcccCC
Confidence 999999999999999999999964
No 3
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=6.5e-67 Score=490.29 Aligned_cols=261 Identities=30% Similarity=0.448 Sum_probs=251.3
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcC-----
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR----- 76 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----- 76 (293)
++||+||+|+++|++|+++.++|++++|+.+|+++|+++++|+.+++.++++.+++||+++|+|+|+|+|.|+++
T Consensus 74 ~~~~~yR~~~~~la~G~~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~ 153 (341)
T CHL00149 74 YVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKE 153 (341)
T ss_pred EEEcccccHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhcccccc
Confidence 689999999999999999999999999999999999999999999989999999999999999999999999886
Q ss_pred --CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 77 --KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 77 --~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
++++|+|++|||++++|.+||+||+|++|+||+||||+||+|+++++...+....++++++++||+++++|||+|+.+
T Consensus 154 ~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~a 233 (341)
T CHL00149 154 VQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLA 233 (341)
T ss_pred CCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHH
Confidence 689999999999999999999999999999999999999999999887766667899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHH
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSS 234 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~ 234 (293)
+++++++|++++|++++|+|||+.|||++|||++|+ ..||+++|++.|+ ++|||.+|+++|+++|+||++++++++++
T Consensus 234 v~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e 311 (341)
T CHL00149 234 VREVAKEAVERARQGDGPTLIEALTYRFRGHSLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQRE 311 (341)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999975 5799999999998 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcccccccccCC
Q 022717 235 VRKQILHALQEAEKAEKPPISDLFTDVYDV 264 (293)
Q Consensus 235 ~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~ 264 (293)
++++|++++++|+++|.|+++++|+|||++
T Consensus 312 ~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~ 341 (341)
T CHL00149 312 VKIEIEQAVQFAISSPEPNISDLKKYLFAD 341 (341)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 999999999999999999999999999974
No 4
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-68 Score=478.19 Aligned_cols=290 Identities=66% Similarity=1.146 Sum_probs=281.9
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCC-ce
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD-AC 80 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~-~~ 80 (293)
.||++||..|++|+||+++++++.+++|+..+..+|++||+|++.++.|++..++++..++|.|+|+|+|.|+.+.+ +.
T Consensus 139 li~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac 218 (432)
T KOG1182|consen 139 LIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNAC 218 (432)
T ss_pred ccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999977655 89
Q ss_pred EEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHH
Q 022717 81 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 160 (293)
Q Consensus 81 vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~ 160 (293)
+||++|||+.++|.+|.++|+|+....|+||+|-||+|+||||+++++....++.++.+||+..++|||||+.+||.|++
T Consensus 219 ~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k 298 (432)
T KOG1182|consen 219 AVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVK 298 (432)
T ss_pred EEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 022717 161 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 240 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~ 240 (293)
+|.+++-...+|+|||++|||.++||+|||.+.||+.+|++.|.+.++||.+||+++..+|+|+++...+++++++++|.
T Consensus 299 ~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~rk~vl 378 (432)
T KOG1182|consen 299 EAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIRKKVL 378 (432)
T ss_pred HHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccccccccCCCCccHHHHHHHHHHHHHhCCCCCCCCC
Q 022717 241 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNV 291 (293)
Q Consensus 241 ~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 291 (293)
++++.|++-++|++.++|+|||.++|.+|++|...|++.++++|++|++..
T Consensus 379 ~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq~~~l~~~i~~~~e~Yp~~~ 429 (432)
T KOG1182|consen 379 EAIAAAEKKEKPNLTELFEDVYDEMPKNLREQELELKEHIEKHPEHYPLKD 429 (432)
T ss_pred HHHHHHhcccCCCHHHHHHHHhhhhhHhHHHHHHHHHHHHHhCcccCchhh
Confidence 999999999999999999999999999999999999999999999999653
No 5
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=8.2e-67 Score=485.59 Aligned_cols=260 Identities=32% Similarity=0.546 Sum_probs=252.8
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||+|+++|++|+++.++|++++|+.+|+|+|+++++|+.++..++++.+++||+++|+|+|+|+|.|+.+++++|
T Consensus 56 ~~~~~yR~~~~~la~G~~~~~~~~~~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~v 135 (315)
T TIGR03182 56 YVITSYRDHGHALARGVPPKEVMAELTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVT 135 (315)
T ss_pred EEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.++|+||+|+++++|+||||+||+|+++++.+.+....+++++|++||+++++|||+|+.+|++++++
T Consensus 136 v~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~ 215 (315)
T TIGR03182 136 ACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKE 215 (315)
T ss_pred EEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777778999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|++++|+|||+.|||++|||++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++++++++++|++
T Consensus 216 A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~ 293 (315)
T TIGR03182 216 AVERARSGKGPILLEMKTYRFRGHSMSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEE 293 (315)
T ss_pred HHHHHHccCCCEEEEEeCCcCCCCCCCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876 799999999998 699999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccC
Q 022717 242 ALQEAEKAEKPPISDLFTDVYD 263 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~ 263 (293)
++++|++.|.|+++++|+|||+
T Consensus 294 a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 294 AVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred HHHHHHhCCCCCHHHHHhhccC
Confidence 9999999999999999999995
No 6
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=4.6e-66 Score=477.45 Aligned_cols=253 Identities=38% Similarity=0.635 Sum_probs=231.4
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||||+++|++|+++.++|++++|+..+.+.|+. +.|+..+..++++.++++|.++|+|+|+|+|.|+.+.+.++
T Consensus 48 ~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~ 126 (300)
T PF00676_consen 48 WVFPYYRDHGHALARGIDLEEIFAELLGKAKGHGGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVV 126 (300)
T ss_dssp EEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTTTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred EEEecccchhhhhhccccccchhHHhcCcccCCCCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeE
Confidence 68999999999999999999999999999865544444 57777777889999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||+++||.|||+||+|++|+|||||||+||+|+|+|+.+.+....+++++|++||+|+++|||+|+.+|++++++
T Consensus 127 v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~ 206 (300)
T PF00676_consen 127 VCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKE 206 (300)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHH
T ss_pred EEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|+++||+|||++|||++|||++|||..||+++|++.|++.+|||.+++++|+++|++|++++++|+++++++|++
T Consensus 207 A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~ 286 (300)
T PF00676_consen 207 AVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEE 286 (300)
T ss_dssp HHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888988876789999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcc
Q 022717 242 ALQEAEKAEKPPIS 255 (293)
Q Consensus 242 a~~~a~~~~~p~~~ 255 (293)
++++|+++|.|+||
T Consensus 287 a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 287 AVEFAEASPEPDPE 300 (300)
T ss_dssp HHHHHHHSHBC-G-
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999985
No 7
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.6e-66 Score=467.10 Aligned_cols=261 Identities=31% Similarity=0.513 Sum_probs=251.9
Q ss_pred eecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEE
Q 022717 3 TLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 82 (293)
Q Consensus 3 ~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv 82 (293)
++++||||++.+.+|.++.++|+|++|+.+|+++|.|++||+..+ +|++.+|++|.|+|+++|+|+|.|+++.+.+++
T Consensus 114 iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~ 191 (394)
T KOG0225|consen 114 IITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCF 191 (394)
T ss_pred eEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEE
Confidence 678999999999999999999999999999999999999999876 599999999999999999999999999999999
Q ss_pred EEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHH
Q 022717 83 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 162 (293)
Q Consensus 83 ~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a 162 (293)
++.|||+.+||.++|++|+|++|+||+||||+||.|++.|+.++....+++.+++ .| +|+++|||+|+.+|.+|.+.|
T Consensus 192 alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA 269 (394)
T KOG0225|consen 192 ALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFA 269 (394)
T ss_pred EEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888889999998 45 999999999999999999999
Q ss_pred HHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 022717 163 REMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 242 (293)
Q Consensus 163 ~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a 242 (293)
.+++++++||+++|+.|||++|||.+|+.+.||+.+|++..+.+||||..++++|++.++.|++|+++|+++++++||++
T Consensus 270 ~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdea 349 (394)
T KOG0225|consen 270 KKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEA 349 (394)
T ss_pred HHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988999999999998878999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcccccccccCCCCc
Q 022717 243 LQEAEKAEKPPISDLFTDVYDVSPS 267 (293)
Q Consensus 243 ~~~a~~~~~p~~~~~~~~v~~~~~~ 267 (293)
+++|+++|.|++++||+|||...+.
T Consensus 350 v~~A~~~p~p~~~eL~~dvy~~~~~ 374 (394)
T KOG0225|consen 350 VAFATASPEPEPSELFTDVYVKGTG 374 (394)
T ss_pred HHHhhcCCCCCHHHHHHHhhccCCC
Confidence 9999999999999999999987543
No 8
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=9.2e-65 Score=486.42 Aligned_cols=263 Identities=27% Similarity=0.443 Sum_probs=252.3
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcC-----
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR----- 76 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~----- 76 (293)
++|++||+|+++|++|+++.++|+|++|+.+|++.|+++++|+.+++.++++.+++||+++|+|+|+|+|.|+++
T Consensus 140 ~v~~~yR~h~~~La~G~~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~ 219 (433)
T PLN02374 140 SVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKE 219 (433)
T ss_pred EEEccCcChHHhhhcCCCHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred --CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 77 --KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 77 --~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
++++|+|++|||++++|.|||+||+|++|+|||||||+||+|+++++...+...+++++++++||+++++|||+|+.+
T Consensus 220 ~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~a 299 (433)
T PLN02374 220 ESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLK 299 (433)
T ss_pred cCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHH
Confidence 588999999999999999999999999999999999999999999887777667899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHH
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSS 234 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~ 234 (293)
|++++++|++++|++++|+|||+.|||++|||++|++ .||+++|++.|+ ++|||.+++++|+++|++|++++++|+++
T Consensus 300 v~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~ 377 (433)
T PLN02374 300 VREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKK 377 (433)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999865 699999999998 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCcccccccccCCCC
Q 022717 235 VRKQILHALQEAEKAEKPPISDLFTDVYDVSP 266 (293)
Q Consensus 235 ~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~ 266 (293)
++++|++++++|+++|.|+++++|+|||+++.
T Consensus 378 ~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~~ 409 (433)
T PLN02374 378 IDEVVEDAVEFADASPLPPRSQLLENVFADPK 409 (433)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhccccCCc
Confidence 99999999999999999999999999999653
No 9
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=9.3e-64 Score=469.55 Aligned_cols=265 Identities=43% Similarity=0.697 Sum_probs=251.5
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++|++||+|+++|++|+++.++|++++|+.+| +. ..+..++++.+++||+++|.|+|+|+|.|+.+++++|
T Consensus 77 ~~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g----~~-----~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~v 147 (341)
T TIGR03181 77 WVFPSYRDHAAMLARGVPLVEILLYWRGDERG----SW-----DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVA 147 (341)
T ss_pred EEEcchhhHHHHHHcCCCHHHHHHHhcCcCcC----CC-----CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEE
Confidence 68999999999999999999999999998754 21 1356889999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
+|++|||++++|.++|+||+|++|+||+||||+||+|+++++...+...+++++++++||+++++|||+|+.+|+++++.
T Consensus 148 v~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 227 (341)
T TIGR03181 148 VTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKE 227 (341)
T ss_pred EEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776666678999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|++++|+|||++|||++|||++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++
T Consensus 228 A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~ 306 (341)
T TIGR03181 228 AVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAE 306 (341)
T ss_pred HHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 699999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcccccccccCCCCccHHHHHHHH
Q 022717 242 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSL 276 (293)
Q Consensus 242 a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~ 276 (293)
++++|+++|.|+++++|+|||++.||+|++|+++|
T Consensus 307 a~~~a~~~p~P~~~~~~~~vy~~~~~~~~~~~~~~ 341 (341)
T TIGR03181 307 AVAEALALPPPPVDDIFDHVYAELPPELEEQRAEL 341 (341)
T ss_pred HHHHHHhCCCCCHHHHHhhcccCCCHHHHHHHHhC
Confidence 99999999999999999999999999999998764
No 10
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=1.4e-61 Score=446.76 Aligned_cols=244 Identities=42% Similarity=0.715 Sum_probs=236.3
Q ss_pred EeecCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceE
Q 022717 2 TTLSSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 81 (293)
Q Consensus 2 ~~~~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~v 81 (293)
++||+||+|+++|++|+++.++|++++|+.+|+++|+++++|+..+..++++.+|+||+++|+|+|+|+|.|+.+++++|
T Consensus 50 ~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~v 129 (293)
T cd02000 50 WVFPTYRDHGHALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVA 129 (293)
T ss_pred EEEecchhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
||++|||++++|.++|+|++|++++||+||||+||+|+++++.+.+.+.+++++++++||+++++|||+|++++++++++
T Consensus 130 v~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~ 209 (293)
T cd02000 130 VCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKE 209 (293)
T ss_pred EEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877766678999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 162 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 162 a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
|++++|++++|+|||+.|||.+|||++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++++++++++|++
T Consensus 210 A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~ 288 (293)
T cd02000 210 AVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEE 288 (293)
T ss_pred HHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 699999999999999999999999999999999999
Q ss_pred HHHHH
Q 022717 242 ALQEA 246 (293)
Q Consensus 242 a~~~a 246 (293)
++++|
T Consensus 289 a~~~a 293 (293)
T cd02000 289 AVEFA 293 (293)
T ss_pred HHHhC
Confidence 98865
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.7e-54 Score=444.25 Aligned_cols=286 Identities=15% Similarity=0.161 Sum_probs=249.5
Q ss_pred Eeec-CCCchHHHHH--cCCCHHHHHHHhhcCC--CCCCCCCCCccccCCCC-----CCc-----ccccccccCccHHHH
Q 022717 2 TTLS-SLREPGVLLW--RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNK-----HNY-----FTVSSTIATQLPHAV 66 (293)
Q Consensus 2 ~~~~-~yR~~~~~l~--~G~~~~~~~~~~~g~~--~~~~~G~~~~~h~~~~~-----~~~-----~~~~g~lG~~lp~A~ 66 (293)
++++ +||||++.|+ +|+++.++|+||+|+. ++.+.++.+.+|++... .+. ...++++|.+.|+|+
T Consensus 245 ~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~ 324 (924)
T PRK09404 245 IVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVE 324 (924)
T ss_pred EEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeeh
Confidence 4677 6999999999 5999999999999987 33333334566666543 111 123689999999999
Q ss_pred HHHHHhhhcCCC------ceEEEEeCcccc-cchHHHHHHHHHhhcCCC---EEEEEEeCCccccccccCccCcccHHHH
Q 022717 67 GAAYALKMDRKD------ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVK 136 (293)
Q Consensus 67 G~A~a~k~~~~~------~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lp---vi~vi~NN~~~~~~~~~~~~~~~d~~~~ 136 (293)
|+|+|.|+++.+ .++||++||||+ +||.|||+||+|++|++| +||||+||+|+++|+...+.+...++++
T Consensus 325 G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~ 404 (924)
T PRK09404 325 GSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDV 404 (924)
T ss_pred hHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHH
Confidence 999999998877 899999999998 799999999999999997 9999999999999998877777788999
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHH
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKW 216 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~ 216 (293)
|++||+|+++|||+|+++|+.+++.|++++|+++||+|||++|||++|||++|+|. ||+++|++.|++.+||+.+|+++
T Consensus 405 Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~~~~dpi~~~~~~ 483 (924)
T PRK09404 405 AKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIKKHPTTRELYADK 483 (924)
T ss_pred HeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999875 99999999998668999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCC----------CCccHHHHHHHHHHHHHhCCCC
Q 022717 217 IESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDV----------SPSNLREQEHSLRETIKKHPQD 286 (293)
Q Consensus 217 L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~----------~~~~~~~~~~~~~~~~~~~p~~ 286 (293)
|+++|++|++++++|+++++++|++++++|++. .+.+.+..+|.. .+....+.++.+.+.+...|++
T Consensus 484 Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~ 560 (924)
T PRK09404 484 LVAEGVITEEEADEMVNEYRDALDAGFEVVKEW---RPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEG 560 (924)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---CcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999976 245566666641 1233456688888899999999
Q ss_pred CCCCC
Q 022717 287 YPSNV 291 (293)
Q Consensus 287 ~~~~~ 291 (293)
|++|.
T Consensus 561 f~~h~ 565 (924)
T PRK09404 561 FKVHP 565 (924)
T ss_pred CcccH
Confidence 99985
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=1.6e-53 Score=435.49 Aligned_cols=289 Identities=17% Similarity=0.141 Sum_probs=253.0
Q ss_pred EeecC-CCchHHHHH--cCCCHHHHHHHhhcCCCC-CCCCCCC-ccccCC-----------CCCCcccccccccCccHHH
Q 022717 2 TTLSS-LREPGVLLW--RGFSMQEFANQCFGNKAD-YGKGRQM-PIHYGS-----------NKHNYFTVSSTIATQLPHA 65 (293)
Q Consensus 2 ~~~~~-yR~~~~~l~--~G~~~~~~~~~~~g~~~~-~~~G~~~-~~h~~~-----------~~~~~~~~~g~lG~~lp~A 65 (293)
+++++ ||||++.|+ +|++++++|++|.|+..+ .+.|+|. .+|++. ...++.+++|+|+.+.|+|
T Consensus 245 ~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva 324 (929)
T TIGR00239 245 VVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVV 324 (929)
T ss_pred EEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchh
Confidence 45666 999999999 999999999999998765 3347765 589984 2345677899999999999
Q ss_pred HHHHHHhhhcCC------CceEEEEeCcccc-cchHHHHHHHHHhhcCCCE---EEEEEeCCccccccccCccCcccHHH
Q 022717 66 VGAAYALKMDRK------DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSDGAVV 135 (293)
Q Consensus 66 ~G~A~a~k~~~~------~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpv---i~vi~NN~~~~~~~~~~~~~~~d~~~ 135 (293)
+|.|+|.|+++. +.++||++|||++ +||.|||+||+|++|++|+ ||||+||+|+++|+...+.+...+++
T Consensus 325 ~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd 404 (929)
T TIGR00239 325 IGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSD 404 (929)
T ss_pred hhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHH
Confidence 999999998765 5789999999997 8999999999999999996 99999999999998777766678899
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHH
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRK 215 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~ 215 (293)
+|++||+|+++|||+|+++|+.+++.|++++|+++||+|||++|||++|||++|+|..||+ ++++.|++.+||+.+|++
T Consensus 405 ~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~ 483 (929)
T TIGR00239 405 LAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYAD 483 (929)
T ss_pred HheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988998 678888766899999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc--c---ccccccC--CCCccHHHHHHHHHHHHHhCCCCCC
Q 022717 216 WIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPIS--D---LFTDVYD--VSPSNLREQEHSLRETIKKHPQDYP 288 (293)
Q Consensus 216 ~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~--~---~~~~v~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 288 (293)
+|+++|++|++++++|+++++++|+++++.++..+.|.+. . +..+.+. ..+....+.++.|.+.+.+.|++|.
T Consensus 484 ~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~ 563 (929)
T TIGR00239 484 KLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVE 563 (929)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCcc
Confidence 9999999999999999999999999999999876655432 1 2222111 1345567889999999999999999
Q ss_pred CCC
Q 022717 289 SNV 291 (293)
Q Consensus 289 ~~~ 291 (293)
+|.
T Consensus 564 ~h~ 566 (929)
T TIGR00239 564 MHS 566 (929)
T ss_pred ccH
Confidence 885
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=2.4e-47 Score=343.79 Aligned_cols=195 Identities=20% Similarity=0.222 Sum_probs=178.7
Q ss_pred EeecC-CCchHHHHH--cCCCHHHHHHHhhcCCC---CCCCCCCCccccCCCC-----------CCcccccccccCccHH
Q 022717 2 TTLSS-LREPGVLLW--RGFSMQEFANQCFGNKA---DYGKGRQMPIHYGSNK-----------HNYFTVSSTIATQLPH 64 (293)
Q Consensus 2 ~~~~~-yR~~~~~l~--~G~~~~~~~~~~~g~~~---~~~~G~~~~~h~~~~~-----------~~~~~~~g~lG~~lp~ 64 (293)
+++++ ||||+++|+ +|++++++|+|+.|+.+ +.+.++++++|++... .++++++|++|.++|+
T Consensus 42 ~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pv 121 (265)
T cd02016 42 VVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPV 121 (265)
T ss_pred EEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCe
Confidence 46777 999999999 99999999999999887 4445778899998764 4567789999999999
Q ss_pred HHHHHHHhhhcC-----CCceEEEEeCcccc-cchHHHHHHHHHhhcCCC---EEEEEEeCCccccccccCccCcccHHH
Q 022717 65 AVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVV 135 (293)
Q Consensus 65 A~G~A~a~k~~~-----~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lp---vi~vi~NN~~~~~~~~~~~~~~~d~~~ 135 (293)
|+|+|+|.|+++ .+.++||++|||++ +||.|||+||+|++|++| +||||+||+|+++|+.+.+.+..++++
T Consensus 122 a~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~ 201 (265)
T cd02016 122 VMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTD 201 (265)
T ss_pred ehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHH
Confidence 999999999987 47899999999996 699999999999999998 999999999999999988877888999
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCC
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRP 196 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~ 196 (293)
+|++||+|+++|||+|+++|++++++|++++|++++|+|||++|||++|||++|+|..++|
T Consensus 202 ~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~~GHse~D~p~~t~p 262 (265)
T cd02016 202 VAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRRHGHNELDEPSFTQP 262 (265)
T ss_pred HHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCCcCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999998865443
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.8e-36 Score=302.91 Aligned_cols=289 Identities=17% Similarity=0.151 Sum_probs=235.8
Q ss_pred EeecCCCchHHHHH--cCCCHHHHHHHhhcCCCCC-CCCCC-CccccCCCCC-----------CcccccccccCccHHHH
Q 022717 2 TTLSSLREPGVLLW--RGFSMQEFANQCFGNKADY-GKGRQ-MPIHYGSNKH-----------NYFTVSSTIATQLPHAV 66 (293)
Q Consensus 2 ~~~~~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~-~~G~~-~~~h~~~~~~-----------~~~~~~g~lG~~lp~A~ 66 (293)
.|-..|||+.+.|+ .|++..++|.||-|+.... ..|+| +.+|++.... ..-.++++|.+.-|+.-
T Consensus 550 vigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVle 629 (1228)
T PRK12270 550 VIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLE 629 (1228)
T ss_pred EecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhh
Confidence 45568999999999 7999999999999987543 34766 6889876421 11234689999999999
Q ss_pred HHHHHhhhcC------CCceEEEEeCcccc-cchHHHHHHHHHhhcCCC---EEEEEEeCCccccccccCccCcccHHHH
Q 022717 67 GAAYALKMDR------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVK 136 (293)
Q Consensus 67 G~A~a~k~~~------~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lp---vi~vi~NN~~~~~~~~~~~~~~~d~~~~ 136 (293)
|+..|++..- -....|+++||++| +||.++|+||+|.++++| +|+||.||+++++|......++....++
T Consensus 630 GivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ 709 (1228)
T PRK12270 630 GIVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDV 709 (1228)
T ss_pred hhhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHH
Confidence 9999988532 24568999999997 899999999999999998 9999999999999987766666677899
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHH
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKW 216 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~ 216 (293)
|+++++|+++|||+||++|.++++.|+++++++++|++|++.|||.+||+++|||++..| ..++.....+..-+.|.+.
T Consensus 710 ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP-~mY~~i~~~~svrk~yte~ 788 (1228)
T PRK12270 710 AKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQP-LMYDLIDAKRSVRKLYTEA 788 (1228)
T ss_pred HhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCc-hhhhhhhhcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875333 2444433233445789999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc---ccc-ccc--cCCCCccHHHHHHHHHHHHHhCCCCCCCC
Q 022717 217 IESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPIS---DLF-TDV--YDVSPSNLREQEHSLRETIKKHPQDYPSN 290 (293)
Q Consensus 217 L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~---~~~-~~v--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 290 (293)
|+.+|.+|++|++++.++++.++++++...++....+++ ..- +.. -...+....+.++.+.+.....|++|++|
T Consensus 789 Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~H 868 (1228)
T PRK12270 789 LIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVH 868 (1228)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccC
Confidence 999999999999999999999999999988765332221 111 111 11134556888999999999999999998
Q ss_pred C
Q 022717 291 V 291 (293)
Q Consensus 291 ~ 291 (293)
.
T Consensus 869 p 869 (1228)
T PRK12270 869 P 869 (1228)
T ss_pred h
Confidence 5
No 15
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.5e-30 Score=250.11 Aligned_cols=288 Identities=14% Similarity=0.118 Sum_probs=239.3
Q ss_pred EeecCCCchHHHHH--cCCCHHHHHHHhhcCCCCCCCCCC-CccccCCCC---C---------CcccccccccCccHHHH
Q 022717 2 TTLSSLREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQ-MPIHYGSNK---H---------NYFTVSSTIATQLPHAV 66 (293)
Q Consensus 2 ~~~~~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~~~G~~-~~~h~~~~~---~---------~~~~~~g~lG~~lp~A~ 66 (293)
++-..|||+.+.|+ .-.+++++|.+|.|.. ....|+| +.+|++... . ..+.++++|.+.-|+.+
T Consensus 306 viGMpHRGRLNvL~NVvRKpl~qIfseF~g~~-~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~ 384 (1017)
T KOG0450|consen 306 VIGMPHRGRLNVLANVVRKPLEQIFSEFSGLE-AADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVM 384 (1017)
T ss_pred EecCCccchhHHHHHHHhhHHHHHHHhccCCC-CCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceee
Confidence 45567999999998 4589999999998843 3444666 678876521 1 13455799999999999
Q ss_pred HHHHHhhhcC-----CCceEEEEeCcccc-cchHHHHHHHHHhhcCC---CEEEEEEeCCccccccccCccCcccHHHHH
Q 022717 67 GAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEA---PVIFICRNNGWAISTPISDQFRSDGAVVKG 137 (293)
Q Consensus 67 G~A~a~k~~~-----~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~l---pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a 137 (293)
|-..|.++.. .+...|.++||++| .||.++|+|.+..+-+. ..|+||.||+++++|......+++...+.|
T Consensus 385 GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDva 464 (1017)
T KOG0450|consen 385 GKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVA 464 (1017)
T ss_pred chHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHH
Confidence 9999988643 34678999999999 89999999998887664 499999999999998877766777778999
Q ss_pred hhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHH
Q 022717 138 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWI 217 (293)
Q Consensus 138 ~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L 217 (293)
++.+.|.++|+++|+++|--+++-|.++...+.+.++|+++|||..||++.|.|... .+-.++.+++.+..+..|.+.|
T Consensus 465 r~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~FT-QPlMYk~I~k~~~~l~~Y~ekL 543 (1017)
T KOG0450|consen 465 RVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPMFT-QPLMYKQIRKHKPVLQKYAEKL 543 (1017)
T ss_pred HHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcccc-chHHHHHHHcCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988654 4568888887778899999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccC--------------CCCccHHHHHHHHHHHHHhC
Q 022717 218 ESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYD--------------VSPSNLREQEHSLRETIKKH 283 (293)
Q Consensus 218 ~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~--------------~~~~~~~~~~~~~~~~~~~~ 283 (293)
+++|.+|++++++..+++...+++|++.++++..-...+-++.-|. +.+....+.++++...+...
T Consensus 544 l~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~ 623 (1017)
T KOG0450|consen 544 LSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSV 623 (1017)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccC
Confidence 9999999999999999999999999999998653332222222221 12445678899999999999
Q ss_pred CCCCCCCC
Q 022717 284 PQDYPSNV 291 (293)
Q Consensus 284 p~~~~~~~ 291 (293)
|++|.+|+
T Consensus 624 PE~F~~Hr 631 (1017)
T KOG0450|consen 624 PEGFKIHR 631 (1017)
T ss_pred Ccccchhh
Confidence 99999997
No 16
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.97 E-value=1.8e-30 Score=259.33 Aligned_cols=170 Identities=19% Similarity=0.186 Sum_probs=149.8
Q ss_pred cCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 5 SSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 5 ~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
++||+|++.|.+|.++..++.+++|+.+|.+++.+ +.|.. ..+|+.|+++|+|+|+|+|.|+++.+.+|+|+
T Consensus 70 ~ghr~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~ 141 (581)
T PRK12315 70 VSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAV 141 (581)
T ss_pred cCCchHHHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 89999999999999999999999999998877766 22321 25688999999999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccC---------ccCcccHHHHHhhcCceEEEE-eCCCHHH
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD---------QFRSDGAVVKGRAYGVRSIRV-DGNDALA 154 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~---------~~~~~d~~~~a~a~G~~~~~V-dG~D~~~ 154 (293)
+|||++++|++||+||+|+.|++|+||||+||+|+++++... .....++..++++|||+++.| ||||+.+
T Consensus 142 iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~ 221 (581)
T PRK12315 142 IGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIES 221 (581)
T ss_pred ECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHH
Confidence 999999999999999999999999999999999999977642 222345678999999999998 9999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
+++++++|. +.++|++|+++|+|..|..
T Consensus 222 l~~a~~~a~----~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 222 LIEAFKEVK----DIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred HHHHHHHHH----hCCCCEEEEEEeecCCCCC
Confidence 999998865 4689999999999998854
No 17
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.96 E-value=3.1e-28 Score=245.01 Aligned_cols=286 Identities=15% Similarity=0.141 Sum_probs=232.7
Q ss_pred EeecCCCchHHHHH--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC----------CCcccccccccCccHHHHHHH
Q 022717 2 TTLSSLREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK----------HNYFTVSSTIATQLPHAVGAA 69 (293)
Q Consensus 2 ~~~~~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~----------~~~~~~~g~lG~~lp~A~G~A 69 (293)
++-..|||+.+.|. .|++++.+|+||.|+......-+.+.+|++... .....++++|....|+..|.+
T Consensus 232 viGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~v 311 (906)
T COG0567 232 VIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSV 311 (906)
T ss_pred EecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcch
Confidence 45568999999998 899999999999986543222223677876532 112234799999999999999
Q ss_pred HHhhhcCC-----CceEEEEeCcccc-cchHHHHHHHHHhhcC--C-CEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 70 YALKMDRK-----DACAVTYFGDGGT-SEGDFHAALNFSAVTE--A-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 70 ~a~k~~~~-----~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~--l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
.|.+.... ....+.++||.++ +||.+.|+||+...-+ . +.+.||.||+.+++|......+.+...+.|+.+
T Consensus 312 Ra~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~ 391 (906)
T COG0567 312 RAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMI 391 (906)
T ss_pred HhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhcc
Confidence 99886532 2456799999999 8999999999998865 4 799999999999998865555556667889999
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcHHHHHHHHHHC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESN 220 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~~~~~~L~~~ 220 (293)
++|+++|+|.||+++..+.+.|++++..++++++|+..|||.+||+++|+|...+| ..++.+++...+...+.+.|+++
T Consensus 392 ~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP-~mY~~I~~h~t~r~~ya~~Lv~~ 470 (906)
T COG0567 392 EAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQP-LMYQKIKKHPTVRKLYADKLIAE 470 (906)
T ss_pred CCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCH-HHHHHHhcCCChhhhHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999986554 46777776788899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCC---------CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 022717 221 GWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDV---------SPSNLREQEHSLRETIKKHPQDYPSNV 291 (293)
Q Consensus 221 g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~~ 291 (293)
|++|+++.+.+.++++..++..+...+... ..+.+...|.. .+....+.++.|...+...|++|..|.
T Consensus 471 gvis~~~~~~~~~~~r~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~ 547 (906)
T COG0567 471 GVISEEEADELVNDYRDALDQGFEVVKEYK---EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHP 547 (906)
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHhHHH---hhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhH
Confidence 999999999999999999988877766544 11122222211 233456788999999999999999985
No 18
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.95 E-value=6.5e-27 Score=211.94 Aligned_cols=168 Identities=26% Similarity=0.297 Sum_probs=140.5
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCC-cccccccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc
Q 022717 13 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN-YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS 91 (293)
Q Consensus 13 ~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~-~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~ 91 (293)
+...|+-+.+-+..+.. .|+.++.|+.....+ +...+|++|+++|.|+|+|+|.++.+++++|+|++|||+++
T Consensus 67 l~~~g~~~~~~l~~~~~------~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~ 140 (255)
T cd02012 67 LALAGYLPEEDLKTFRQ------LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQ 140 (255)
T ss_pred HHHcCCCCHHHHHHhcc------cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECccccc
Confidence 33467544444444421 355677787765443 34457999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccC
Q 022717 92 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEG 170 (293)
Q Consensus 92 ~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~ 170 (293)
+|.++|++++|+.++|| +++|++||+|+++.+........++.+++++|||+++.|||||++++.+++++|.+. .+
T Consensus 141 ~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~ 217 (255)
T cd02012 141 EGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KG 217 (255)
T ss_pred ccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CC
Confidence 99999999999999996 999999999999877766666789999999999999999999999999999988752 27
Q ss_pred CcEEEEEEeecCCCCCCCC
Q 022717 171 RPILIEALTYRVGHHTTSD 189 (293)
Q Consensus 171 gP~lIe~~t~R~~gHs~~D 189 (293)
+|++|+++|.+..||+...
T Consensus 218 ~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 218 KPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CCEEEEEEeecccccCccC
Confidence 8999999999999998544
No 19
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.7e-27 Score=227.11 Aligned_cols=286 Identities=17% Similarity=0.179 Sum_probs=221.2
Q ss_pred EeecCCCchHHHHH--cCCCHHHHHHHhhcCCCCCCC---CCCCccccCCC----------CCCcccccccccCccHHHH
Q 022717 2 TTLSSLREPGVLLW--RGFSMQEFANQCFGNKADYGK---GRQMPIHYGSN----------KHNYFTVSSTIATQLPHAV 66 (293)
Q Consensus 2 ~~~~~yR~~~~~l~--~G~~~~~~~~~~~g~~~~~~~---G~~~~~h~~~~----------~~~~~~~~g~lG~~lp~A~ 66 (293)
++-..|||+.++|. ..++|..||..+.|....+-. -+.+-+|+.+. ....+++++++.+..|+|+
T Consensus 214 iigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAm 293 (913)
T KOG0451|consen 214 IIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAM 293 (913)
T ss_pred EEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhh
Confidence 56678999999988 789999999999998776421 11223344331 1234667899999999999
Q ss_pred HHHHHhhhcC--------------CCceEEEEeCcccc-cchHHHHHHHHHhhc--CC-CEEEEEEeCCccccccccCcc
Q 022717 67 GAAYALKMDR--------------KDACAVTYFGDGGT-SEGDFHAALNFSAVT--EA-PVIFICRNNGWAISTPISDQF 128 (293)
Q Consensus 67 G~A~a~k~~~--------------~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~--~l-pvi~vi~NN~~~~~~~~~~~~ 128 (293)
|-+.+++... .....+.++|||+| .||.++|+++++-.- .+ ..+.+|.||+.+++++.+...
T Consensus 294 GKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGR 373 (913)
T KOG0451|consen 294 GKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGR 373 (913)
T ss_pred cchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccc
Confidence 9999877531 12346778999998 899999999998664 45 489999999999999988777
Q ss_pred CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCC
Q 022717 129 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQD 208 (293)
Q Consensus 129 ~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~d 208 (293)
++....++|+++++++++|+|.||++|.++.+-|++|-|++.+.+||+..|||.+||++.|||+ |.++-.++..+ +|.
T Consensus 374 Ss~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-ftspvmyk~v~-aRe 451 (913)
T KOG0451|consen 374 SSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTSPVMYKEVE-ARE 451 (913)
T ss_pred cchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccChhHHHHHH-hhh
Confidence 7667789999999999999999999999999999999999999999999999999999999985 56664444443 344
Q ss_pred cH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCC---CCccHH--------HHHHHH
Q 022717 209 PV-TRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDV---SPSNLR--------EQEHSL 276 (293)
Q Consensus 209 Pi-~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~---~~~~~~--------~~~~~~ 276 (293)
.+ ..|.++|+++|++|++++++++++..+.+.+.++.+..+.+|+. -|+.-|.. .|..+. .-+..+
T Consensus 452 SvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~--~~~~~W~gf~qapk~it~WdTGv~~dLLrfi 529 (913)
T KOG0451|consen 452 SVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPPS--YFEKQWTGFQQAPKEITYWDTGVDYDLLRFI 529 (913)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCch--hhHHhhhhhccChhhhcccccCcchHHHHHh
Confidence 44 45889999999999999999999999999999988887655442 34443432 222111 122334
Q ss_pred HHHHHhCCCCCCCCC
Q 022717 277 RETIKKHPQDYPSNV 291 (293)
Q Consensus 277 ~~~~~~~p~~~~~~~ 291 (293)
...--+.|+||++|.
T Consensus 530 G~~SV~vPedf~~H~ 544 (913)
T KOG0451|consen 530 GQQSVTVPEDFNIHP 544 (913)
T ss_pred ccCceecchhccccH
Confidence 444457899998873
No 20
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.95 E-value=6.1e-27 Score=202.67 Aligned_cols=160 Identities=26% Similarity=0.307 Sum_probs=140.6
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc
Q 022717 13 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS 91 (293)
Q Consensus 13 ~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~ 91 (293)
+..+|+-+++-+..+ ++ .|+-+++|+....++.+. ++|+||+++++|+|+|++.|+++.+..|++++|||++.
T Consensus 81 Lae~G~~p~eeL~~~-~~-----~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~ 154 (243)
T COG3959 81 LAEKGYFPEEELETF-RR-----IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD 154 (243)
T ss_pred HHHcCCCCHHHHHHh-cc-----CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc
Confidence 344898777777655 32 467789999876665555 58999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccC
Q 022717 92 EGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEG 170 (293)
Q Consensus 92 ~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~ 170 (293)
+|.+|||+.+|+.|+| ++|.||+-|+.+++..+.+..+..++.+++++|||++++|||||++++.+|+.++.. ..+
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~---~~~ 231 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKG---SKG 231 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhc---cCC
Confidence 9999999999999999 699999999999999999888889999999999999999999999999998887764 134
Q ss_pred CcEEEEEEeec
Q 022717 171 RPILIEALTYR 181 (293)
Q Consensus 171 gP~lIe~~t~R 181 (293)
+|.+|.+.|.+
T Consensus 232 rP~~IIa~Tvk 242 (243)
T COG3959 232 RPTVIIAKTVK 242 (243)
T ss_pred CCeEEEEeccc
Confidence 99999999854
No 21
>PRK12754 transketolase; Reviewed
Probab=99.95 E-value=7.9e-26 Score=227.88 Aligned_cols=161 Identities=26% Similarity=0.338 Sum_probs=137.9
Q ss_pred cCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcC----------CCceEE
Q 022717 16 RGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDR----------KDACAV 82 (293)
Q Consensus 16 ~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~----------~~~~vv 82 (293)
.|+ +.+++. .|+ + .|+..++|+.....+.+ ..+|++|+|++.|+|+|+|.|+.+ .+.+|+
T Consensus 78 ~G~~~~~e~L~-~fr-~-----~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~ 150 (663)
T PRK12754 78 TGYDLPMEELK-NFR-Q-----LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTY 150 (663)
T ss_pred cCCCCCHHHHH-Hhc-c-----CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEE
Confidence 674 665543 443 2 35667889887555555 458999999999999999999875 378999
Q ss_pred EEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHH
Q 022717 83 TYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVH 160 (293)
Q Consensus 83 ~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~ 160 (293)
|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||++++ |||||++++.+|++
T Consensus 151 ~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~ 229 (663)
T PRK12754 151 AFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVE 229 (663)
T ss_pred EEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHH
Confidence 99999999999999999999999998 89999999999999988776 57999999999999999 89999999999988
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 161 AAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
+|.+. .++|++|+++|++..|.+.
T Consensus 230 ~a~~~---~~~Pt~I~~~T~~g~G~~~ 253 (663)
T PRK12754 230 EARAV---TDKPSLLMCKTIIGFGSPN 253 (663)
T ss_pred HHHhc---CCCCEEEEEEeeeccCccc
Confidence 87642 5889999999999999874
No 22
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.95 E-value=1.6e-26 Score=201.54 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=129.5
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCc-ccccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY-FTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~-~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
.|...+++...|. . +-+.++.. .|+ ++.|+.....+. ...+|++|+++|+|+|+|+|.|+++.+++|+|+
T Consensus 33 gH~~~~~~~~~g~-~-~~l~~~~~------~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~ 103 (195)
T cd02007 33 GHQAYPHKILTGR-R-DQFHTLRQ------YGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAV 103 (195)
T ss_pred ccHHHHHHHHHCC-H-HHHhhhhc------CCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4555555555665 2 23444431 244 777876544333 346899999999999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHH
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAR 163 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~ 163 (293)
+|||++++|++||+|++|+.+++|+++||+||+|++++++. +..++++++||.... |||+|++++.+++++|.
T Consensus 104 ~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~ 177 (195)
T cd02007 104 IGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK 177 (195)
T ss_pred EcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHH
Confidence 99999999999999999999988999999999999987664 467788899999986 99999999999888875
Q ss_pred HHhhccCCcEEEEEEeecCCC
Q 022717 164 EMAIGEGRPILIEALTYRVGH 184 (293)
Q Consensus 164 ~~~r~~~gP~lIe~~t~R~~g 184 (293)
+ .++|++|++.|.+..|
T Consensus 178 ~----~~~P~~I~~~T~kg~g 194 (195)
T cd02007 178 D----LKGPVLLHVVTKKGKG 194 (195)
T ss_pred h----CCCCEEEEEEEecccC
Confidence 4 6899999999988665
No 23
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.94 E-value=1.2e-25 Score=227.24 Aligned_cols=162 Identities=23% Similarity=0.300 Sum_probs=136.3
Q ss_pred HcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcC----------CCceE
Q 022717 15 WRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDR----------KDACA 81 (293)
Q Consensus 15 ~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~----------~~~~v 81 (293)
..|+ +.+++ ..|+. .|+.+++|+.....+.+ ..+|++|++++.|+|+|+|.|+.+ .+.+|
T Consensus 73 ~~G~~~~~e~L-~~fr~------~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v 145 (653)
T TIGR00232 73 LTGYDLSIEDL-KQFRQ------LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYT 145 (653)
T ss_pred HcCCCCCHHHH-Hhccc------CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEE
Confidence 3785 55554 44432 35667889877444444 458999999999999999999763 47889
Q ss_pred EEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHH
Q 022717 82 VTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAV 159 (293)
Q Consensus 82 v~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~ 159 (293)
+|++|||++++|.+||++++|+.++|| +|+||+||+|++++++.... ..++.+++++|||++++| ||||+.++.+|+
T Consensus 146 ~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~ 224 (653)
T TIGR00232 146 YVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAI 224 (653)
T ss_pred EEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Confidence 999999999999999999999999998 89999999999999988776 578999999999999999 999999999888
Q ss_pred HHHHHHhhcc-CCcEEEEEEeecCCCCCCC
Q 022717 160 HAAREMAIGE-GRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 160 ~~a~~~~r~~-~gP~lIe~~t~R~~gHs~~ 188 (293)
++|.+ . ++|++|+++|+|.+|.+..
T Consensus 225 ~~a~~----~~~~P~~I~~~T~~g~G~~~~ 250 (653)
T TIGR00232 225 EEAKA----SKDKPTLIEVTTTIGFGSPNK 250 (653)
T ss_pred HHHHh----CCCCCEEEEEEeeecccCccc
Confidence 77643 4 4899999999999998643
No 24
>PRK12753 transketolase; Reviewed
Probab=99.94 E-value=2e-25 Score=225.82 Aligned_cols=167 Identities=23% Similarity=0.257 Sum_probs=138.9
Q ss_pred HHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCCCC-CcccccccccCccHHHHHHHHHhhhcCC----------C
Q 022717 12 VLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRK----------D 78 (293)
Q Consensus 12 ~~l~~G~--~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~-~~~~~~g~lG~~lp~A~G~A~a~k~~~~----------~ 78 (293)
++...|. +.++ +..|+. .|+..++|+..... ++...+|++|++++.|+|+|+|.|+.+. +
T Consensus 74 ~l~~~G~~~~~e~-L~~fr~------~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~ 146 (663)
T PRK12753 74 LLHLTGYDLPIEE-LKNFRQ------LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVD 146 (663)
T ss_pred HHHHhCCCCCHHH-HHHhcc------CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccC
Confidence 3444674 4444 444532 35556788876544 4445689999999999999999998652 6
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE-EeCCCHHHHH
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIY 156 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~ 156 (293)
.+|+|++|||++++|.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||+++. |||||+.+++
T Consensus 147 ~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~ 225 (663)
T PRK12753 147 HYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIK 225 (663)
T ss_pred CEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHH
Confidence 899999999999999999999999999997 89999999999999887765 57899999999999995 9999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 189 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~D 189 (293)
+++++|.+ ..++|++|+++|++.+|++...
T Consensus 226 ~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~e 255 (663)
T PRK12753 226 EAILEAQS---VKDKPSLIICRTIIGFGSPNKA 255 (663)
T ss_pred HHHHHHHH---CCCCeEEEEEEEeecCCCCccc
Confidence 99998875 2578999999999999998543
No 25
>PTZ00089 transketolase; Provisional
Probab=99.94 E-value=7.3e-26 Score=229.18 Aligned_cols=189 Identities=22% Similarity=0.213 Sum_probs=150.2
Q ss_pred CCCc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhcCC---
Q 022717 6 SLRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMDRK--- 77 (293)
Q Consensus 6 ~yR~---~~~~l~~G~-~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~--- 77 (293)
.|.. .+++...|. ...+-+..+.+ .|+..+.|+.....+.+. .+|++|++++.|+|+|+|.|+.+.
T Consensus 67 GH~~~~lYa~l~l~G~~~~~~~l~~fr~------~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~ 140 (661)
T PTZ00089 67 GHASALLYSMLHLTGYDLSMEDLKNFRQ------LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFN 140 (661)
T ss_pred cchHHHHHHHHHHcCCCCCHHHHHhcCC------CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhcc
Confidence 4555 445556774 33333444532 244456787655444444 589999999999999999998653
Q ss_pred -------CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE-e
Q 022717 78 -------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-D 148 (293)
Q Consensus 78 -------~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-d 148 (293)
+.+|+|++|||++++|.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||+++.| |
T Consensus 141 ~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~d 219 (661)
T PTZ00089 141 RPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYGWHVIEVDN 219 (661)
T ss_pred CccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhcCCcEEEeCC
Confidence 7889999999999999999999999999996 89999999999999887653 578999999999999999 9
Q ss_pred CC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC---CCCChHHHHHHH
Q 022717 149 GN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST---KYRPVDEIEWWR 204 (293)
Q Consensus 149 G~-D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~---~Yr~~~e~~~~~ 204 (293)
|| |+.++++++++|.+. .++|++|+++|+|..||...+... .+.+++|++.++
T Consensus 220 G~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 220 GNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred CCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHH
Confidence 99 999999999988753 368999999999999986655432 255667777765
No 26
>PRK05899 transketolase; Reviewed
Probab=99.93 E-value=3.4e-25 Score=223.62 Aligned_cols=183 Identities=25% Similarity=0.258 Sum_probs=145.4
Q ss_pred hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcCC----------
Q 022717 10 PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRK---------- 77 (293)
Q Consensus 10 ~~~~l~~G~-~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~~---------- 77 (293)
.+++...|. -..+-+..+.. .|+.++.|+.....+++ ..+|++|+++|.|+|+|+|.++.+.
T Consensus 76 Ya~l~~~G~~~~~~~l~~~~~------~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~ 149 (624)
T PRK05899 76 YSLLHLAGYDLSIDDLKNFRQ------LGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIV 149 (624)
T ss_pred HHHHHHcCCCCCHHHHHHhcC------CCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCc
Confidence 334556786 33333444421 23335677765433444 4589999999999999999998776
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
+++|+|++|||++++|.+||+|++|+.++|| +++|++||+|+++.+.... ...++.+++++|||++++|||||+.++.
T Consensus 150 ~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~ 228 (624)
T PRK05899 150 DHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAID 228 (624)
T ss_pred CCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHH
Confidence 7899999999999999999999999999997 9999999999998776643 3578999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCC----hHHHHHH
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRP----VDEIEWW 203 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~----~~e~~~~ 203 (293)
+++++|.+ .++|++|++.|.|..||+..++...|+. +++++.+
T Consensus 229 ~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~ 275 (624)
T PRK05899 229 AAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAA 275 (624)
T ss_pred HHHHHHHh----cCCCEEEEEEeEeccCCccccCCCcccCCCCCHHHHHHH
Confidence 99998875 4789999999999999987766555654 3455544
No 27
>PLN02790 transketolase
Probab=99.93 E-value=7.1e-25 Score=221.74 Aligned_cols=175 Identities=21% Similarity=0.229 Sum_probs=141.4
Q ss_pred cCCCc---hHHHHHcCC---CHHHHHHHhhcCCCCCCCCCCCccccCCCCCC-cccccccccCccHHHHHHHHHhhh---
Q 022717 5 SSLRE---PGVLLWRGF---SMQEFANQCFGNKADYGKGRQMPIHYGSNKHN-YFTVSSTIATQLPHAVGAAYALKM--- 74 (293)
Q Consensus 5 ~~yR~---~~~~l~~G~---~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~-~~~~~g~lG~~lp~A~G~A~a~k~--- 74 (293)
..|.. .+++...|. +.++ +..|+. .|+-.++|+.....+ +...+|++|++++.|+|+|+|.|+
T Consensus 54 ~GH~~~~lYa~l~~~G~~~~~~~~-l~~~r~------~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~ 126 (654)
T PLN02790 54 AGHGCMLQYALLHLAGYDSVQMED-LKQFRQ------WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAA 126 (654)
T ss_pred CcchHHHHHHHHHHcCCCCCCHHH-HHHhcc------CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHH
Confidence 34665 445666776 4444 455532 355567788764444 445689999999999999999995
Q ss_pred --cCC-----CceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEE
Q 022717 75 --DRK-----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR 146 (293)
Q Consensus 75 --~~~-----~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 146 (293)
.++ +.+|+|++|||++++|.+||++|+|+.++|| +|+||+||++++++++.... ..++.+++++|||+++.
T Consensus 127 ~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~ 205 (654)
T PLN02790 127 RFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEALGWHTIW 205 (654)
T ss_pred HhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHHcCCeEEE
Confidence 342 6899999999999999999999999999997 99999999999999887554 56889999999999999
Q ss_pred EeC--CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 022717 147 VDG--NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 190 (293)
Q Consensus 147 VdG--~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd 190 (293)
||| ||++++++++++|.+. .++|++|+++|++.+|.+...+
T Consensus 206 vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~ 248 (654)
T PLN02790 206 VKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKAN 248 (654)
T ss_pred ECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccC
Confidence 988 8999999999887642 5889999999999999874433
No 28
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.93 E-value=5.2e-25 Score=205.75 Aligned_cols=150 Identities=30% Similarity=0.378 Sum_probs=122.4
Q ss_pred CCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhcC----------CCceEEEEeCcccccchHHHHHHHHHhh
Q 022717 36 KGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAV 104 (293)
Q Consensus 36 ~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~----------~~~~vv~~~GDGa~~~G~~~Eal~~A~~ 104 (293)
.|+.+++|+.....+.+. ++|+||+|++.|+|+|+|.|+.+ -+.+|+|++|||++++|.+|||+.+|+.
T Consensus 90 ~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~ 169 (332)
T PF00456_consen 90 LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGH 169 (332)
T ss_dssp TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHH
Confidence 466678899865566665 47999999999999999998642 3678999999999999999999999999
Q ss_pred cCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 105 TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 105 ~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
++| ++|+|+++|+.++++++.... ..++.++.++|||.+++| ||||++++++|+++|.. ..++|++|.+.|...
T Consensus 170 ~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG 245 (332)
T PF00456_consen 170 YKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKG 245 (332)
T ss_dssp TT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TT
T ss_pred hCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEe
Confidence 999 599999999999998876544 468899999999999998 99999999999998864 247999999999998
Q ss_pred CCCCCCC
Q 022717 183 GHHTTSD 189 (293)
Q Consensus 183 ~gHs~~D 189 (293)
+|-+...
T Consensus 246 ~G~~~~e 252 (332)
T PF00456_consen 246 KGVPFME 252 (332)
T ss_dssp TTSTTTT
T ss_pred cCchhhc
Confidence 8875443
No 29
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.92 E-value=2.3e-23 Score=196.02 Aligned_cols=173 Identities=18% Similarity=0.132 Sum_probs=138.9
Q ss_pred cCCCc---hHHHHHcCCCHHHHHHHhhcCCCCCCCCC--CCccccCCCC-CC-cccccccccCccHHHHHHHHHhhh---
Q 022717 5 SSLRE---PGVLLWRGFSMQEFANQCFGNKADYGKGR--QMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM--- 74 (293)
Q Consensus 5 ~~yR~---~~~~l~~G~~~~~~~~~~~g~~~~~~~G~--~~~~h~~~~~-~~-~~~~~g~lG~~lp~A~G~A~a~k~--- 74 (293)
..|-. .+++...|+-+.+-+..|.. .|+ +.+.|+.... .+ +..++|++|.+++.|+|+|+|.|+
T Consensus 66 kGHas~~lYA~L~l~G~~~~edL~~fr~------~gs~p~l~g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a 139 (386)
T cd02017 66 QGHASPGIYARAFLEGRLTEEQLDNFRQ------EVGGGGLSSYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLED 139 (386)
T ss_pred CCcccHHHHHHHHHcCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHh
Confidence 34555 33455578544444555642 233 4666665432 33 334689999999999999999997
Q ss_pred ----cCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCc-cCcccHHHHHhhcCceEEEEe
Q 022717 75 ----DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 75 ----~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~Vd 148 (293)
.+.+.+|+|++|||++++|.+||++++|+.++| ++|+|+++|+++++.++... ....++.+++++|||.++.||
T Consensus 140 ~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e~l~~kf~AfGW~vi~V~ 219 (386)
T cd02017 140 RGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVI 219 (386)
T ss_pred hhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCchhHHHHHHhcCCEEEEEe
Confidence 556889999999999999999999999999999 69999999999999888774 356799999999999999998
Q ss_pred ---------------------------------------------------------------------CCCHHHHHHHH
Q 022717 149 ---------------------------------------------------------------------GNDALAIYSAV 159 (293)
Q Consensus 149 ---------------------------------------------------------------------G~D~~~v~~a~ 159 (293)
|||+.+|.+|+
T Consensus 220 ~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~ 299 (386)
T cd02017 220 WGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDLWALNRGGHDPRKVYAAY 299 (386)
T ss_pred cCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHH
Confidence 99999999999
Q ss_pred HHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 160 HAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 160 ~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
+++... .++|++|.+.|...+|.+
T Consensus 300 ~~a~~~---~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 300 KKAVEH---KGKPTVILAKTIKGYGLG 323 (386)
T ss_pred HHHHhC---CCCCeEEEEeCeecCCCC
Confidence 887642 468999999999988876
No 30
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.91 E-value=7.2e-24 Score=212.30 Aligned_cols=170 Identities=20% Similarity=0.217 Sum_probs=136.3
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhc-CCCceEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMD-RKDACAVT 83 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~-~~~~~vv~ 83 (293)
.|.+.+++...|. .++ +..++. .|+ +++|+.....+.+. .+|++|+++|+|+|+|+|.|+. +++++|+|
T Consensus 75 GH~~y~~~~~~g~-~~~-l~~~~~------~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~ 145 (580)
T PRK05444 75 GHQAYPHKILTGR-RDR-FDTLRQ------KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVA 145 (580)
T ss_pred cHHHHHHHHHhCc-HHH-hcCccc------CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEE
Confidence 4555556666775 222 333321 244 67788765544444 5899999999999999999988 58899999
Q ss_pred EeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCc---cCcccHHHHHhhcCceEE-EEeCCCHHHHHHHH
Q 022717 84 YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAV 159 (293)
Q Consensus 84 ~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~---~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~ 159 (293)
++|||++++|++||+|++|+.+++|+++|++||+|++++++... ....++.+++++|||+++ .|||+|++++++++
T Consensus 146 i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al 225 (580)
T PRK05444 146 VIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETL 225 (580)
T ss_pred EEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999998776433 233567789999999999 58999999999988
Q ss_pred HHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 022717 160 HAAREMAIGEGRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 160 ~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 188 (293)
+++.+ .++|++|++.|.|..|.+..
T Consensus 226 ~~a~~----~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 226 KNAKD----LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHHHh----CCCCEEEEEEecCCcCCChh
Confidence 87764 57999999999999987643
No 31
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=3.8e-22 Score=195.01 Aligned_cols=161 Identities=25% Similarity=0.284 Sum_probs=135.9
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccc-cccccCccHHHHHHHHHhhhcC-----C-----CceEEEE
Q 022717 16 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV-SSTIATQLPHAVGAAYALKMDR-----K-----DACAVTY 84 (293)
Q Consensus 16 ~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~-~g~lG~~lp~A~G~A~a~k~~~-----~-----~~~vv~~ 84 (293)
..++++++.. |+. -|+-.++|+.....+.+.. +|+||+|++.|||+|+|.++.. + |..++|+
T Consensus 82 y~ls~edLk~-FRQ------~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl 154 (663)
T COG0021 82 YDLSLEDLKN-FRQ------LGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVL 154 (663)
T ss_pred CCCCHHHHHh-hcc------CCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEE
Confidence 3456666644 321 2555688999887777765 7999999999999999988632 2 4689999
Q ss_pred eCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCccCcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHH
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAA 162 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a 162 (293)
+|||++++|+.+|+..+|+.++|. +|++.++|.++|++.+...+ ..|..+|+++|||.++ .+||||++++..|+++|
T Consensus 155 ~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~A 233 (663)
T COG0021 155 VGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEA 233 (663)
T ss_pred ecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH
Confidence 999999999999999999999995 99999999999999887776 5799999999999999 57999999999999998
Q ss_pred HHHhhccCCcEEEEEEeecCCCCCC
Q 022717 163 REMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 163 ~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
.. ..++|++|+|+|.-.+|-..
T Consensus 234 k~---~~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 234 KA---STDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred Hh---cCCCCeEEEEEeeeecCCCC
Confidence 86 36799999999987766544
No 32
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.90 E-value=2.4e-23 Score=209.40 Aligned_cols=170 Identities=19% Similarity=0.177 Sum_probs=134.3
Q ss_pred cCCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc--cccccccCccHHHHHHHHHhhhcCCCceEE
Q 022717 5 SSLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF--TVSSTIATQLPHAVGAAYALKMDRKDACAV 82 (293)
Q Consensus 5 ~~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~--~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv 82 (293)
..|...++++..|. . +-|..++. .|+ +++|+.... +.+ ..+|++|+++++|+|+|+|.|+++.+.+|+
T Consensus 68 ~GH~~Y~~~~~~G~-~-~~l~~~r~------~g~-l~g~p~~~e-~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~ 137 (617)
T TIGR00204 68 VGHQAYPHKLLTGR-R-EKFSTLRQ------KKG-LHGFPKRSE-SEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTV 137 (617)
T ss_pred cchHHHHHHHHhCc-H-HHhcchhh------cCC-cCCCCcCCC-CCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEE
Confidence 34667777777886 2 33444432 244 777876543 323 358999999999999999999999999999
Q ss_pred EEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccC------------------------cc---c-HH
Q 022717 83 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR------------------------SD---G-AV 134 (293)
Q Consensus 83 ~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~------------------------~~---d-~~ 134 (293)
|++|||++++|.+||++|+|+.++||+|+||+||+++++++...... .+ + +.
T Consensus 138 ~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 217 (617)
T TIGR00204 138 CVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLA 217 (617)
T ss_pred EEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHH
Confidence 99999999999999999999999999999999999999977642210 01 1 33
Q ss_pred HH--------------HhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 022717 135 VK--------------GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 135 ~~--------------a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 188 (293)
++ +++|||.++ .|||||+.++.++++.+. +.++|++|+++|.|..|.+..
T Consensus 218 ~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak----~~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 218 KRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETLKNAK----KLKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred HHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHHHHHh----cCCCCEEEEEEecCCCCCchh
Confidence 33 889999999 799999999999888665 357899999999998885543
No 33
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.89 E-value=1.3e-22 Score=179.17 Aligned_cols=136 Identities=24% Similarity=0.331 Sum_probs=116.5
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHH---HH
Q 022717 21 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HA 97 (293)
Q Consensus 21 ~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~---~E 97 (293)
+++|.+|. ..|+ +++|+.....++...+|+||+++++|+|+|+ ++++.+|+|++|||++++|.+ |+
T Consensus 34 ~~lf~qfs------~~gg-~psH~~~~tpGi~~~~G~LG~gLs~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~ 102 (227)
T cd02011 34 RKLFKQFS------FPGG-IPSHAAPETPGSIHEGGELGYSLSHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWH 102 (227)
T ss_pred HHHHHhcC------CCCC-CCCCCcccCCCeeecccchhhHHHHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHH
Confidence 55777762 1233 8899987666777789999999999999974 568899999999999999996 88
Q ss_pred HHHHHhhcCC-CEEEEEEeCCccccccccCc-cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhh
Q 022717 98 ALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 167 (293)
Q Consensus 98 al~~A~~~~l-pvi~vi~NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r 167 (293)
+..++..+++ .|+.|++||+|+|++++... .+..++.+++++|||+.+.|||+|++++++++++|++++|
T Consensus 103 a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 103 SNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred hhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 8888888999 49999999999999998855 4567899999999999999999999999999998887655
No 34
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.87 E-value=9.2e-21 Score=192.31 Aligned_cols=165 Identities=21% Similarity=0.233 Sum_probs=136.7
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccc-ccccccCccHHHHHHHHHhhh-------cCCCceEEEEe
Q 022717 15 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFT-VSSTIATQLPHAVGAAYALKM-------DRKDACAVTYF 85 (293)
Q Consensus 15 ~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~-~~g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~ 85 (293)
..|.-.++-+..|+.-. .|+++++|+.... .+++. ++|+||.|++.|+|+|++.|+ +..+.+|+|++
T Consensus 150 l~G~ls~e~L~~FRq~~----~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvll 225 (885)
T TIGR00759 150 LEGRLTEEQLDNFRQEV----QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFL 225 (885)
T ss_pred HcCCCCHHHHHHhcCCC----CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEE
Confidence 37855555556664311 2667777776433 33454 479999999999999999996 56788999999
Q ss_pred CcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEEE----------------
Q 022717 86 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV---------------- 147 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~V---------------- 147 (293)
|||+++||.+|||+.+|++++| ++|+||++|+.++++++..... ..++.++++++||.++.|
T Consensus 226 GDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g 305 (885)
T TIGR00759 226 GDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSG 305 (885)
T ss_pred cchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCcc
Confidence 9999999999999999999999 6999999999999998876544 468999999999999999
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcEE
Q 022717 148 -----------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPIL 174 (293)
Q Consensus 148 -----------------------------------------------------dG~D~~~v~~a~~~a~~~~r~~~gP~l 174 (293)
+|||+.+|++|++.|.+. .++|++
T Consensus 306 ~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPTv 382 (885)
T TIGR00759 306 VLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPTV 382 (885)
T ss_pred HHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCEE
Confidence 599999999999888753 357999
Q ss_pred EEEEeecCCCCC
Q 022717 175 IEALTYRVGHHT 186 (293)
Q Consensus 175 Ie~~t~R~~gHs 186 (293)
|.++|.+.+|.+
T Consensus 383 IlA~TvKG~G~~ 394 (885)
T TIGR00759 383 ILAKTIKGYGMG 394 (885)
T ss_pred EEEeeeecCCCC
Confidence 999999988876
No 35
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.87 E-value=1.4e-20 Score=192.70 Aligned_cols=165 Identities=21% Similarity=0.210 Sum_probs=132.2
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccc-ccccccCccHHHHHHHHHhhhc-------CCCceEEEEeC
Q 022717 16 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFT-VSSTIATQLPHAVGAAYALKMD-------RKDACAVTYFG 86 (293)
Q Consensus 16 ~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~-~~g~lG~~lp~A~G~A~a~k~~-------~~~~~vv~~~G 86 (293)
.|.-.++-+..|+.- .+|++++.|+.... ..++. ++|+||.|++.|+|+|++.|+. ..+.+|+|++|
T Consensus 151 ~G~l~~e~L~~fRq~----~~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llG 226 (889)
T TIGR03186 151 EGFLSDAQLAHYRQE----IAGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFG 226 (889)
T ss_pred cCCCCHHHHHHhcCC----CCCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEc
Confidence 785444445556432 12455555443222 33455 4799999999999999998843 23689999999
Q ss_pred cccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEEE-----------------
Q 022717 87 DGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV----------------- 147 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~V----------------- 147 (293)
||+++||.+|||+.+|+.++| ++|+||++|+.++++++..... ..++.+++++|||.+++|
T Consensus 227 DGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~ 306 (889)
T TIGR03186 227 DGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGA 306 (889)
T ss_pred chhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchH
Confidence 999999999999999999999 6999999999999998876433 468999999999999999
Q ss_pred ----------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcEEE
Q 022717 148 ----------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPILI 175 (293)
Q Consensus 148 ----------------------------------------------------dG~D~~~v~~a~~~a~~~~r~~~gP~lI 175 (293)
+|||+.+|++|+++|.+. .++|++|
T Consensus 307 L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PTvI 383 (889)
T TIGR03186 307 LARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPTVI 383 (889)
T ss_pred HHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEEE
Confidence 699999999999998862 4689999
Q ss_pred EEEeecCCCCCC
Q 022717 176 EALTYRVGHHTT 187 (293)
Q Consensus 176 e~~t~R~~gHs~ 187 (293)
.++|...+|-+.
T Consensus 384 la~TvkG~G~~~ 395 (889)
T TIGR03186 384 LAKTMKGFGMGA 395 (889)
T ss_pred EEEeeecCCCCc
Confidence 999999888543
No 36
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.86 E-value=4.7e-21 Score=193.55 Aligned_cols=171 Identities=22% Similarity=0.236 Sum_probs=130.2
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCc-ccccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY-FTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~-~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
.|-..++++..|. .+-|..++. .|+ ++.|+...+... .-..++-+++++.|+|+|+|.++.+++++|+|+
T Consensus 77 GH~~Y~~~~l~g~--~~~l~~~r~------~~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v 147 (641)
T PRK12571 77 GHQCYPHKILTGR--RDRFRTLRQ------KGG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAV 147 (641)
T ss_pred chHHHHHHHHhCC--HHHHhhhhh------CCC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4666667777775 334455532 233 566665533221 112344466789999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccccc-------CccCcccH------------------------
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-------DQFRSDGA------------------------ 133 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~-------~~~~~~d~------------------------ 133 (293)
+|||++++|++||++++|+.+++|+++|++||++++++++. +......+
T Consensus 148 ~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (641)
T PRK12571 148 IGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARR 227 (641)
T ss_pred EeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999987764 11111111
Q ss_pred -----------HHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 022717 134 -----------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 134 -----------~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 188 (293)
.+++++|||.++ .|||||++++.++++++.+. .++|++|+++|.+..|.+..
T Consensus 228 ~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~~~ 291 (641)
T PRK12571 228 ARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYAPA 291 (641)
T ss_pred HHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcchh
Confidence 378999999999 79999999999999887642 37899999999998887643
No 37
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.85 E-value=1.2e-20 Score=188.87 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=131.5
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
.|-..++.+..|..- -|..++. .|+ +++|+........ ..+|++|.++++|+|+|+|+++++.+..|+|+
T Consensus 135 GHqaya~~~ltgr~~--~l~t~r~------~gg-l~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~v 205 (641)
T PLN02234 135 GHQSYPHKILTGRRG--KMKTIRQ------TNG-LSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSV 205 (641)
T ss_pred chhHHHHHHHHhhhh--hhccccc------CCC-cCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 355555666555421 1333321 233 6777765443333 35899999999999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcc------ccccccCccCc---------------ccHHHHHhhcCce
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------ISTPISDQFRS---------------DGAVVKGRAYGVR 143 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~------~~~~~~~~~~~---------------~d~~~~a~a~G~~ 143 (293)
+|||++++|++||||+.|+..+-++|+|+++|+.+ .+++....... .+..+++++|||.
T Consensus 206 iGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~ 285 (641)
T PLN02234 206 IGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFH 285 (641)
T ss_pred EccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCE
Confidence 99999999999999999997676899999999984 33333221111 2567899999999
Q ss_pred EE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 022717 144 SI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 190 (293)
Q Consensus 144 ~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd 190 (293)
++ .|||||++++.++++++.+. ..++|++|.++|.+..|.+...+
T Consensus 286 ~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 286 YVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred EEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 99 99999999999999877532 23589999999999998876654
No 38
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.83 E-value=1.7e-19 Score=165.73 Aligned_cols=232 Identities=16% Similarity=0.118 Sum_probs=161.8
Q ss_pred CCCchHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCC
Q 022717 6 SLREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 78 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~-~~~~~~~g~~~------~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~ 78 (293)
-||||++....|.++. .++.+.+|+.+ ||+.+.++.+|+.. .+....++++|.+.++|.|+++|.+..+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5899999999998888 88888888776 55556555555443 344555789999999999999999877655
Q ss_pred c-eEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccC-----------------ccCcccHHHHHhhc
Q 022717 79 A-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD-----------------QFRSDGAVVKGRAY 140 (293)
Q Consensus 79 ~-~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~-----------------~~~~~d~~~~a~a~ 140 (293)
. .|++++|||++..+.+ |+|+.|..+++|++|||.||.+.+.|-.+. .....|+.+++.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 4 4555999999987776 999999999999999999999865432211 11235889999999
Q ss_pred CceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC--------------CCCCh-HHHH---
Q 022717 141 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST--------------KYRPV-DEIE--- 201 (293)
Q Consensus 141 G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~--------------~Yr~~-~e~~--- 201 (293)
|++.+ +++-.|+.++.+++++|++ .+||.+|++.+.=..++...++.+ .||=. .++.
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~spC~~~~~~~~~~~~~~~k~Av~tg~wplye~~~g~~~~~~ 246 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLAPCPPGWRFDPDKTIEIARLAVETGVWPLFEYENGKFKLNS 246 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCCCcChHHHHHHHHHHHHcCCceEEEEECCEEEEcc
Confidence 99766 6788899999999999996 589999999762222211111000 01100 0000
Q ss_pred ---HH--HhCCCcHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022717 202 ---WW--RTTQDPVTRFRKWIESNG---WWNGDIESELRSSVRKQILHALQEAE 247 (293)
Q Consensus 202 ---~~--~~~~dPi~~~~~~L~~~g---~~~~~~~~~i~~~~~~~v~~a~~~a~ 247 (293)
.| .+.+-|+ +++|..+| .+.+++++++++++.++.+.-.+.++
T Consensus 247 ~~~~~~~~~~~~pv---~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~ 297 (300)
T PRK11864 247 PSKTLLDKKKRKPV---EEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAK 297 (300)
T ss_pred CCccccccccCCCH---HHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0122354 45555554 56788888888888887766554444
No 39
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.83 E-value=9e-20 Score=184.02 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=128.3
Q ss_pred CCCchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcCCCceEEEE
Q 022717 6 SLREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 84 (293)
Q Consensus 6 ~yR~~~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~ 84 (293)
.|-..++.+..|.. +-|..++. .|+ ++.|+.... ....-.+|++|.+++.|+|+|+|.++++.+.+|+|+
T Consensus 102 GH~ay~~~~l~gr~--~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~v 172 (677)
T PLN02582 102 GHQSYPHKILTGRR--DKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAV 172 (677)
T ss_pred cchHHHHHHHHccH--HHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEE
Confidence 46666777777752 22444421 244 777876543 333345899999999999999999999999999999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-cc--------cccccCc-------cCc------------------
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AI--------STPISDQ-------FRS------------------ 130 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~--------~~~~~~~-------~~~------------------ 130 (293)
+|||++++|++||+||+|+.+++|+|+||+||+. ++ +...... ..+
T Consensus 173 iGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 252 (677)
T PLN02582 173 IGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIG 252 (677)
T ss_pred ecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999996 33 1111000 000
Q ss_pred ---ccHH----------------HHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 022717 131 ---DGAV----------------VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 188 (293)
Q Consensus 131 ---~d~~----------------~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~ 188 (293)
..+. .++++|||.++ .|||||++++.++++++.+. ..++|++|+++|-+..|...+
T Consensus 253 ~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 253 GPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 0111 24789999977 79999999999999888752 116899999999998887654
No 40
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.83 E-value=4e-20 Score=161.25 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=111.9
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+++..++..+....+. .+.+.+. ..++. ..+..++.. .++||+++|+|+|+++|. ++++|||++|
T Consensus 4 l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~----p~r~vv~i~G 79 (196)
T cd02013 4 MHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAA----PDRPVVAIAG 79 (196)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhC----CCCcEEEEEc
Confidence 5677777766554432 1222221 11222 223445543 589999999999998885 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEE-EeCCccccccccC----------ccCcccHHHHHhhcCceEEEEeCCCHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD----------QFRSDGAVVKGRAYGVRSIRVDGNDALAI 155 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~~----------~~~~~d~~~~a~a~G~~~~~VdG~D~~~v 155 (293)
||+|++. .. +|.+|+++++|+++|| +|++|++....+. .....||.++|++||+++++|+ +++++
T Consensus 80 DG~f~m~-~~-eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el 155 (196)
T cd02013 80 DGAWGMS-MM-EIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPEDV 155 (196)
T ss_pred chHHhcc-HH-HHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEEC--CHHHH
Confidence 9999863 44 4999999999966655 6667876432111 1235799999999999999998 79999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
..++++|++.+| .++|+|||+.+.+.
T Consensus 156 ~~al~~a~~~~~-~~~p~liev~v~~~ 181 (196)
T cd02013 156 GPALQKAIAMMA-EGKTTVIEIVCDQE 181 (196)
T ss_pred HHHHHHHHhcCC-CCCeEEEEEEeCcc
Confidence 999999987554 37899999999654
No 41
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=9.4e-20 Score=176.55 Aligned_cols=164 Identities=24% Similarity=0.281 Sum_probs=136.6
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccc-ccccccCccHHHHHHHHHhhhcCC-CceEEEEeCcc
Q 022717 11 GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFT-VSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDG 88 (293)
Q Consensus 11 ~~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~-~~~vv~~~GDG 88 (293)
++....|....+=+.+|+. .|+..+.|+. ++.++.. .+|++|++++.|+|+|++.|+.+. +.+|+|++|||
T Consensus 79 a~~~l~G~~~~edl~~~Rq------~~s~t~ghp~-~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG 151 (632)
T KOG0523|consen 79 AHWHLAGYDREEDLKNFRQ------IGSDTPGHPE-PELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDG 151 (632)
T ss_pred HHHHHhccCcHHHHHHHHh------hCCCCCCCCc-ccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCc
Confidence 3444567555555555643 2455677887 4456665 489999999999999999998887 89999999999
Q ss_pred cccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHH-HHhhcCceEEEEeCCCHHHHHHHHHHHHHHh
Q 022717 89 GTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMA 166 (293)
Q Consensus 89 a~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~-~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~ 166 (293)
+.++|+.|||+++|+.++| ++|+|.+||+.+++++++..+. .++.+ +.++|||.+..|||+|++++.+++.+|..
T Consensus 152 ~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~-- 228 (632)
T KOG0523|consen 152 CLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS-- 228 (632)
T ss_pred hhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh--
Confidence 9999999999999999999 5999999999999988877654 57776 99999999999999999999999999873
Q ss_pred hccCCcEEEEEEeecCCCC
Q 022717 167 IGEGRPILIEALTYRVGHH 185 (293)
Q Consensus 167 r~~~gP~lIe~~t~R~~gH 185 (293)
..++|+.|-+.|+..+|-
T Consensus 229 -~k~kpt~i~~~t~~g~G~ 246 (632)
T KOG0523|consen 229 -VKGKPTAIKATTFIGRGS 246 (632)
T ss_pred -ccCCceeeeeeeeeecCc
Confidence 358899999999887763
No 42
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.83 E-value=2.7e-19 Score=183.96 Aligned_cols=165 Identities=21% Similarity=0.224 Sum_probs=135.2
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCC-Cccc-ccccccCccHHHHHHHHHhhh-------cCCCceEEEEe
Q 022717 15 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFT-VSSTIATQLPHAVGAAYALKM-------DRKDACAVTYF 85 (293)
Q Consensus 15 ~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~-~~~~-~~g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~ 85 (293)
..|.-.++-+..|+. .. .|.+++.|+..... .++. .+|+||.|++.|+|+|++.|+ ...+++|+|++
T Consensus 164 l~G~l~~e~L~~fR~-~~---~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~l 239 (896)
T PRK13012 164 LEGRLSEEQLDHFRQ-EI---GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFF 239 (896)
T ss_pred HcCCCCHHHHHHhcC-CC---CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEE
Confidence 367444444555642 21 25667777665443 3455 479999999999999999983 45678999999
Q ss_pred CcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEEE----------------
Q 022717 86 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV---------------- 147 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~V---------------- 147 (293)
|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.++++++||.++.|
T Consensus 240 GDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~ 319 (896)
T PRK13012 240 GDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTG 319 (896)
T ss_pred chhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCcc
Confidence 9999999999999999999999 6999999999999998876544 468999999999999999
Q ss_pred ----------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCcEE
Q 022717 148 ----------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRPIL 174 (293)
Q Consensus 148 ----------d-------------------------------------------G~D~~~v~~a~~~a~~~~r~~~gP~l 174 (293)
| |||+.+|++|++.|.+. .++|++
T Consensus 320 ~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~Ptv 396 (896)
T PRK13012 320 ALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPTV 396 (896)
T ss_pred HHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCEE
Confidence 8 99999999999988752 467999
Q ss_pred EEEEeecCCCCC
Q 022717 175 IEALTYRVGHHT 186 (293)
Q Consensus 175 Ie~~t~R~~gHs 186 (293)
|.++|.+.+|-+
T Consensus 397 Ila~TvkG~G~~ 408 (896)
T PRK13012 397 ILAKTKKGYGMG 408 (896)
T ss_pred EEEEeeecCCCC
Confidence 999999988865
No 43
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.82 E-value=9.9e-20 Score=155.32 Aligned_cols=113 Identities=22% Similarity=0.279 Sum_probs=92.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEE-EeCCccccccccC-------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------- 126 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~~------- 126 (293)
.|+||+++|+|+|+++|. ++++|+|++|||++++. .++|++|++++||+++|| +||+|++....+.
T Consensus 47 ~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~ 120 (172)
T cd02004 47 FGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGL 120 (172)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCC
Confidence 589999999999999886 68899999999999863 466999999999966555 5557887643322
Q ss_pred ----ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 ----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 ----~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.....|+.+++++||+++.+|+ +++++.++++++.+ .++|++||+.+
T Consensus 121 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 121 PVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred ceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 1235789999999999999998 68888888888765 58999999986
No 44
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.81 E-value=1.6e-19 Score=158.08 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=112.0
Q ss_pred CCCHHHHHHHhhcCCCC---CCCCCCCc-----cccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 17 GFSMQEFANQCFGNKAD---YGKGRQMP-----IHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~---~~~G~~~~-----~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
.+++..+++++....++ ...+.+.. .++.. .+..++.. .|+||+++|.|+|+++|. ++++|||++
T Consensus 7 ~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~----p~~~vv~i~ 82 (202)
T cd02006 7 PIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAAD----PDRQVVALS 82 (202)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhC----CCCeEEEEE
Confidence 36777777777554443 11222211 12222 23344443 589999999999999886 688999999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC------------c--------cCcccHHHHHhhcCceE
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------------Q--------FRSDGAVVKGRAYGVRS 144 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~------------~--------~~~~d~~~~a~a~G~~~ 144 (293)
|||+|++. ..+|.+|+++++|+++||.|| +|++....+. . ....|++++|++||+++
T Consensus 83 GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 160 (202)
T cd02006 83 GDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKA 160 (202)
T ss_pred eChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEE
Confidence 99999864 345999999999966655555 5775421110 0 01369999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 145 IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 145 ~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
.+|+ +++++.+++++|++.+++.++|+|||+.+.+.
T Consensus 161 ~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 161 IRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred EEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 9998 79999999999986544468999999998654
No 45
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.81 E-value=1.7e-18 Score=177.61 Aligned_cols=164 Identities=22% Similarity=0.232 Sum_probs=134.7
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCC-Cccc-ccccccCccHHHHHHHHHhhh-------cCCCceEEEEe
Q 022717 15 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFT-VSSTIATQLPHAVGAAYALKM-------DRKDACAVTYF 85 (293)
Q Consensus 15 ~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~-~~~~-~~g~lG~~lp~A~G~A~a~k~-------~~~~~~vv~~~ 85 (293)
..|.-.++-+..|+.- +.|+++++|+..... .++. .+++||.|++.|+|+|++.|+ .+.+++|+|++
T Consensus 156 l~G~l~~e~L~~fR~~----~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~ 231 (891)
T PRK09405 156 LEGRLTEEQLDNFRQE----VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFL 231 (891)
T ss_pred HcCCCCHHHHHHhcCC----CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEE
Confidence 3674444444556432 246678887765433 3444 478999999999999999993 45688999999
Q ss_pred CcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEEE----------------
Q 022717 86 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV---------------- 147 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~V---------------- 147 (293)
|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.++++++||.++.|
T Consensus 232 GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g 311 (891)
T PRK09405 232 GDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSG 311 (891)
T ss_pred cchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCcc
Confidence 9999999999999999999999 6999999999999988876433 468899999999999999
Q ss_pred ----------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCcEE
Q 022717 148 ----------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRPIL 174 (293)
Q Consensus 148 ----------d-------------------------------------------G~D~~~v~~a~~~a~~~~r~~~gP~l 174 (293)
| |||+.+|++|++.|.+. .++|++
T Consensus 312 ~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~Ptv 388 (891)
T PRK09405 312 KLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQPTV 388 (891)
T ss_pred HHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCCCEE
Confidence 4 99999999999988762 478999
Q ss_pred EEEEeecCCCC
Q 022717 175 IEALTYRVGHH 185 (293)
Q Consensus 175 Ie~~t~R~~gH 185 (293)
|.++|.+.+|.
T Consensus 389 Iia~TvkG~G~ 399 (891)
T PRK09405 389 ILAKTIKGYGM 399 (891)
T ss_pred EEEeceecCCC
Confidence 99999998886
No 46
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.80 E-value=3.2e-19 Score=150.54 Aligned_cols=114 Identities=30% Similarity=0.359 Sum_probs=92.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccccc--------
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-------- 125 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~-------- 125 (293)
..++||+++|.|+|++++. ++++|+|++|||++++ ..++|++|+.+++|+++||.||++...+...
T Consensus 44 ~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~ 117 (168)
T cd00568 44 GFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGR 117 (168)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCC
Confidence 4689999999999999987 4789999999999986 4588999999999988877777754432221
Q ss_pred ---CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 ---~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
......|+.+++++||+++++|+ +++++.++++++. +.++|++||++|
T Consensus 118 ~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~----~~~~p~~i~v~~ 168 (168)
T cd00568 118 VSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEAL----AAGGPALIEVKT 168 (168)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 22345689999999999999998 4778887777776 478999999975
No 47
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.80 E-value=3.4e-19 Score=152.56 Aligned_cols=119 Identities=30% Similarity=0.337 Sum_probs=95.2
Q ss_pred CCcccc-cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC
Q 022717 49 HNYFTV-SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD 126 (293)
Q Consensus 49 ~~~~~~-~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~ 126 (293)
.+++.. .|+||+++|.|+|+++|. ++++|+|++|||+|+++. ++|.+|+++++|+++||.||+ |++....+.
T Consensus 41 ~~~~~~~~g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~ 114 (178)
T cd02002 41 GSYFTLRGGGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLK 114 (178)
T ss_pred CCeeccCCccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHH
Confidence 344432 389999999999999986 578999999999998764 569999999999887777775 887542110
Q ss_pred -----------------ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 -----------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 -----------------~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.....|+.+++++||+++++|++ ++++.+++++|++ .++|++||+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 115 RVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred HHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11346899999999999999984 8889888888875 58999999964
No 48
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.79 E-value=1.3e-18 Score=149.38 Aligned_cols=115 Identities=24% Similarity=0.305 Sum_probs=92.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~-------- 125 (293)
.|+||+++|.|+|+++|. ++++|+|++|||+++++ +.| |.++.++++|+++||.||+ |++....+
T Consensus 50 ~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~ 123 (178)
T cd02014 50 LATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEF 123 (178)
T ss_pred CchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCce
Confidence 489999999999998885 67899999999999976 565 8999999999777777774 77642111
Q ss_pred -CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 -~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
......|+.+++++||+++.+++ +++++.++++++++ .++|+|||+.+.+
T Consensus 124 ~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 124 GVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11234689999999999999998 68888887777765 5899999999854
No 49
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.79 E-value=2.3e-18 Score=147.95 Aligned_cols=121 Identities=21% Similarity=0.143 Sum_probs=93.6
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccccC--
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPISD-- 126 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~~-- 126 (293)
.++...++||+++|.|+|+++|. ++++|++++|||++++.. .++|.+|+++++|+++ |++||+|++....+.
T Consensus 45 ~~~~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~ 119 (178)
T cd02008 45 NAIDTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPG 119 (178)
T ss_pred hhccccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCC
Confidence 34445799999999999999997 578999999999997422 4679999999999555 555556765432211
Q ss_pred -------ccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 -------QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 -------~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.....|+.+++++||+++++| ++.|..++.+++++|++ .++|++|++..
T Consensus 120 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 120 TGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred CcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 012368999999999999998 77788777788888875 58999999964
No 50
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.78 E-value=2.1e-18 Score=148.07 Aligned_cols=121 Identities=20% Similarity=0.298 Sum_probs=95.7
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~ 125 (293)
.+++.. .++||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|+++++|+++ |++|++|++....+
T Consensus 39 ~~~~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~ 112 (177)
T cd02010 39 NTCLISNGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKWKQ 112 (177)
T ss_pred CCEEeCCCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHHHH
Confidence 344433 579999999999999986 68899999999999754 3559999999999655 45566687642111
Q ss_pred ---------CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 ---------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 ---------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
......|+.++|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 113 EKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred HHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 11134699999999999999997 89999999998876 5899999999854
No 51
>PRK06163 hypothetical protein; Provisional
Probab=99.78 E-value=4.7e-18 Score=148.84 Aligned_cols=134 Identities=20% Similarity=0.200 Sum_probs=101.5
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc-CCCEEEEEEeC-CccccccccC-
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISD- 126 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~-~lpvi~vi~NN-~~~~~~~~~~- 126 (293)
+++ ..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+++++ ++|+++||.|| +|++......
T Consensus 52 ~~~-~~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~ 124 (202)
T PRK06163 52 NFY-MLGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTL 124 (202)
T ss_pred CeE-eecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCC
Confidence 344 4799999999999999986 78899999999999853 3569999887 68866655555 6886432211
Q ss_pred ccCcccHHHHHhhcCce-EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHH
Q 022717 127 QFRSDGAVVKGRAYGVR-SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIE 201 (293)
Q Consensus 127 ~~~~~d~~~~a~a~G~~-~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~ 201 (293)
.....||.++|++||++ +++|+ ++.++..+++++++ .++|+|||+.+.+.. +-+..+|++.|++
T Consensus 125 ~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~ 189 (202)
T PRK06163 125 TSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIR 189 (202)
T ss_pred CCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHH
Confidence 12347999999999998 67887 89999999999875 589999999986542 2244557776664
No 52
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.77 E-value=1.9e-18 Score=151.76 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=95.8
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCE-EEEEEeCCcccccccc
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~ 125 (293)
..++. ..|+||+++|.|+|+++|. ++++|||++|||+|+++ . .+|.+|+++++|+ ++|++||+|++....+
T Consensus 39 ~~~~~~~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q 112 (205)
T cd02003 39 GGYHLEYGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLML-H-SEIVTAVQEGLKIIIVLFDNHGFGCINNLQ 112 (205)
T ss_pred CcEEcCCCcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhcc-H-HHHHHHHHcCCCCEEEEEECCccHHHHHHH
Confidence 44553 3589999999999999885 68899999999999874 3 4599999999995 5566666787632110
Q ss_pred -----C------------------ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 126 -----D------------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 126 -----~------------------~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
. .....|+.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 186 (205)
T cd02003 113 ESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred HHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecc
Confidence 0 0124699999999999999996 89999999998875 58999999999654
No 53
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.77 E-value=3.1e-18 Score=148.00 Aligned_cols=121 Identities=25% Similarity=0.353 Sum_probs=93.3
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc-
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI- 124 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~- 124 (293)
.+++.. .++||+++|.|+|+++|. ++++||+++|||+|++. . .+|.+|+++++|+++||.||+ |++....
T Consensus 41 ~~~~~~~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~ 114 (186)
T cd02015 41 RSWLTSGGLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-I-QELATAAQYNLPVKIVILNNGSLGMVRQWQ 114 (186)
T ss_pred CeEEeCCCccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-H-HHHHHHHHhCCCeEEEEEECCccHHHHHHH
Confidence 445543 489999999999999886 67899999999999853 3 459999999999766555555 5543211
Q ss_pred -----c-----CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 -----S-----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 -----~-----~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. ......|+.++|++||+++++|+ +.+++.+++++|++ .++|+|||+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 115 ELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred HHHcCCceeeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11134689999999999999998 57788887777764 6899999999964
No 54
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.77 E-value=5.6e-18 Score=145.79 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=94.9
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-C-EEEEEEeCCccccccccC
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-P-VIFICRNNGWAISTPISD 126 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-p-vi~vi~NN~~~~~~~~~~ 126 (293)
.+++ ..|+||+++|.|+|+++|.+ ++|+|++|||+++++ ..+|.+++++++ | +++|++||+|++......
T Consensus 36 ~~~~-~~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~ 107 (179)
T cd03372 36 LNFY-MLGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPT 107 (179)
T ss_pred cccc-cccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCC
Confidence 3444 48999999999999999963 789999999999753 346889999995 6 455678888887643322
Q ss_pred cc-CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 127 QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 127 ~~-~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
.. ...|+.++|++||+++.+|+| +++++.+++++++ ++|++||+.|.+..
T Consensus 108 ~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~ 158 (179)
T cd03372 108 HAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGN 158 (179)
T ss_pred CCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCC
Confidence 22 256899999999999999987 7888888887775 68999999996543
No 55
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.76 E-value=3.5e-18 Score=144.04 Aligned_cols=118 Identities=13% Similarity=0.073 Sum_probs=93.7
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc-CCCEEEEE-EeCCccccccccC
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFIC-RNNGWAISTPISD 126 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~-~lpvi~vi-~NN~~~~~~~~~~ 126 (293)
.+++. .|+||+++|.|+|+++|. + ++|||++|||+|++. . .+|.+++++ ++|+++|| +|++|++......
T Consensus 36 ~~~~~-~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~-~-~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~ 107 (157)
T cd02001 36 GHFYM-LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN-P-GVLLTAGEFTPLNLILVVLDNRAYGSTGGQPT 107 (157)
T ss_pred CCEEe-ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc-c-cHHHHHHHhcCCCEEEEEEeCccccccCCcCC
Confidence 44544 899999999999999986 2 789999999999753 2 458999999 49966655 6666876542222
Q ss_pred ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 127 QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 127 ~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.....|+.++|++||+++++|+ +++++.++++++++ .++|++||+.+.
T Consensus 108 ~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 108 PSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred CCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 2235799999999999999996 79999999999886 589999999884
No 56
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.76 E-value=1.4e-17 Score=144.35 Aligned_cols=117 Identities=18% Similarity=0.112 Sum_probs=92.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEE-EEEeCCccccccccCccCccc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF-ICRNNGWAISTPISDQFRSDG 132 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~-vi~NN~~~~~~~~~~~~~~~d 132 (293)
+|+||+++|.|+|+++|. +++.|+|++|||+|++ ..++|.+++++++ |+++ |++|++|++...........|
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 599999999999999986 6789999999999974 3456999999997 6555 555555776432222223479
Q ss_pred HHHHHhhcCceE-EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 133 AVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 133 ~~~~a~a~G~~~-~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
+.++|++||+.+ .+|+ ++.++.++++++++ .++|++||+.+.+..
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~ 166 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGS 166 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 999999999997 5787 89999999988875 578999999997654
No 57
>PRK05261 putative phosphoketolase; Provisional
Probab=99.76 E-value=9.9e-18 Score=170.12 Aligned_cols=142 Identities=23% Similarity=0.293 Sum_probs=119.1
Q ss_pred CCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHH---HHHHHHHhhcCC-CEEEEEE
Q 022717 39 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICR 114 (293)
Q Consensus 39 ~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~---~Eal~~A~~~~l-pvi~vi~ 114 (293)
|+++|+.....++...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++.-.++ .|+.|+.
T Consensus 125 g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld 200 (785)
T PRK05261 125 GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILH 200 (785)
T ss_pred CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEE
Confidence 678899865556666789999999999999965 47889999999999999984 787778888888 4899999
Q ss_pred eCCccccccccCc-cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHH-----------Hhhcc---CCcE--EEEE
Q 022717 115 NNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE-----------MAIGE---GRPI--LIEA 177 (293)
Q Consensus 115 NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~-----------~~r~~---~gP~--lIe~ 177 (293)
+|+|+|++++... ....++.+++++|||+.+.|||+|+.+++.++++|++ .+|.+ .+|+ +|.+
T Consensus 201 ~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~ 280 (785)
T PRK05261 201 LNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVL 280 (785)
T ss_pred ecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEE
Confidence 9999999998855 3457899999999999999999999999988766555 33434 5899 9999
Q ss_pred EeecCCC
Q 022717 178 LTYRVGH 184 (293)
Q Consensus 178 ~t~R~~g 184 (293)
+|...+|
T Consensus 281 rT~kG~g 287 (785)
T PRK05261 281 RTPKGWT 287 (785)
T ss_pred ECCccCC
Confidence 9988655
No 58
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.75 E-value=1.1e-17 Score=144.54 Aligned_cols=116 Identities=23% Similarity=0.284 Sum_probs=93.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccC------c
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISD------Q 127 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~------~ 127 (293)
.++||+++|.|+|+++|. +++.|++++|||+|++ .++| |.+|+++++| +++|++||+|++...... .
T Consensus 49 ~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (183)
T cd02005 49 WGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYND 122 (183)
T ss_pred hhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCccc
Confidence 589999999999999986 5789999999999976 4566 8899999998 666777778887432111 1
Q ss_pred cCcccHHHHHhhcC----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 128 FRSDGAVVKGRAYG----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 128 ~~~~d~~~~a~a~G----~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
....|+.++|++|| +++.+|+ +++++.++++++++ ..++|+|||+.+.+
T Consensus 123 ~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 123 IANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred CCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 22468999999999 7888886 89999998888885 14789999999865
No 59
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.75 E-value=4.7e-18 Score=142.22 Aligned_cols=119 Identities=27% Similarity=0.400 Sum_probs=93.8
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc-
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI- 124 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~- 124 (293)
.+++. ..++||+++|.|+|+++|. ++++||+++|||+|.+. . .+|.+|.++++|+++||.|| +|++....
T Consensus 19 ~~~~~~~~~g~mG~~~~~aiGa~~a~----p~~~vv~i~GDG~f~~~-~-~el~ta~~~~~~v~~vv~nN~~~~~~~~~~ 92 (153)
T PF02775_consen 19 RRFLTSGGFGSMGYALPAAIGAALAR----PDRPVVAITGDGSFLMS-L-QELATAVRYGLPVVIVVLNNGGYGMTGGQQ 92 (153)
T ss_dssp TEEEESTTTT-TTTHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH-G-GGHHHHHHTTSSEEEEEEESSBSHHHHHHH
T ss_pred CeEEcCCCccccCCHHHhhhHHHhhc----CcceeEEecCCcceeec-c-chhHHHhhccceEEEEEEeCCcceEecccc
Confidence 44544 3689999999999999984 78999999999999864 3 45999999999966655555 56554211
Q ss_pred ---c------Cc---cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 125 ---S------DQ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 125 ---~------~~---~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
. .. ....|+.++|+++|+++.+|+..|++++.+++++|++ .++|+||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 93 TPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred ccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 1 11 3457899999999999999997777999999999985 799999997
No 60
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.74 E-value=2.4e-17 Score=142.14 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=91.8
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEEEEEeC-CccccccccC
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNN-GWAISTPISD 126 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN-~~~~~~~~~~ 126 (293)
.+++ ..|+||+++|.|+|+++|. +++|||++|||+|+++. ++|.+|+++++ |+++||.|| +|++......
T Consensus 36 ~~~~-~~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~ 107 (181)
T TIGR03846 36 LNFY-MLGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPT 107 (181)
T ss_pred CCee-eccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCC
Confidence 3444 3899999999999999985 67899999999998653 56999999995 977666555 4777542211
Q ss_pred cc-CcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 127 QF-RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 127 ~~-~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.. ...|+.++|++||+++.+ |+ +++++.++++ +++ .++|++||+.+.+
T Consensus 108 ~~~~~~d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 108 PASRRTDLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CCCCCCCHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 11 256899999999999998 76 7889988885 553 5899999999864
No 61
>PRK07524 hypothetical protein; Provisional
Probab=99.73 E-value=2.6e-17 Score=163.64 Aligned_cols=118 Identities=26% Similarity=0.304 Sum_probs=97.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Ccccccc---------c
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------I 124 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~---------~ 124 (293)
.|+||+++|.|+|+++|. ++++|||++|||+|++. .+| |.+|+++++|+++||.|| +|++... .
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 489999999999999986 78899999999999853 454 999999999977766666 7875321 1
Q ss_pred cCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 022717 125 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 184 (293)
Q Consensus 125 ~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~g 184 (293)
.......|+.++|++||+++++|+ +++++.++++++++ .++|+|||++++|+.+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 112235799999999999999997 89999999988875 6899999999999875
No 62
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.72 E-value=3.7e-17 Score=163.77 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=115.7
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 90 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~ 90 (293)
+++..++.++....++ .....+. ..++.. .+..++.. .++||+++|.|+|+++|. ++++|||++|||+|
T Consensus 385 i~~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f 460 (569)
T PRK08327 385 ITPAYLSYCLGEVADEYDAIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLAT----PDRLVIATVGDGSF 460 (569)
T ss_pred cCHHHHHHHHHHhcCccceEEeccHHHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcC----CCCeEEEEecCcce
Confidence 6777787777554432 1122222 222222 23445544 489999999999998874 78999999999999
Q ss_pred cchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc-----------------cCcc-CcccHHHHHhhcCceEEEEeCCC
Q 022717 91 SEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----------------SDQF-RSDGAVVKGRAYGVRSIRVDGND 151 (293)
Q Consensus 91 ~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~-----------------~~~~-~~~d~~~~a~a~G~~~~~VdG~D 151 (293)
+++...++|++|+++++|+++||.|| +|++.... .... ...|+.++|++||+++.+|+ +
T Consensus 461 ~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~ 538 (569)
T PRK08327 461 IFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--D 538 (569)
T ss_pred eecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--C
Confidence 88765557999999999977766666 67764210 1111 34689999999999999998 8
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 152 ALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 152 ~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
++++..++++|++.++++++|+|||+.+.
T Consensus 539 ~~el~~al~~a~~~~~~~~gp~liev~v~ 567 (569)
T PRK08327 539 PEELKGALRRALAAVRKGRRSAVLDVIVD 567 (569)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 99999999999987777788999999873
No 63
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.72 E-value=2.5e-17 Score=163.82 Aligned_cols=152 Identities=23% Similarity=0.280 Sum_probs=111.0
Q ss_pred CHHHHHHHhhcCCCC---CCCCCCC-cc----ccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 19 SMQEFANQCFGNKAD---YGKGRQM-PI----HYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 19 ~~~~~~~~~~g~~~~---~~~G~~~-~~----h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
.|..++..+.....+ .+.+.|. .+ |+.. .+.+++.+ .|+||+++|.|+|++++. +++.|||++||
T Consensus 360 ~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GD 435 (550)
T COG0028 360 KPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGD 435 (550)
T ss_pred CHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHhcccCCCCcEEcCCCCccccchHHHHHHHHhhC----CCCcEEEEEcc
Confidence 466777766554443 2233332 11 2222 23344443 689999999999998887 78999999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccCcc---------Cccc-HHHHHhhcCceEEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQF---------RSDG-AVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~~~---------~~~d-~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|+|++. .++|.||+++++|+++||.||+ |++....+... -... |.++|++||+++++|+ +++++.
T Consensus 436 G~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~ 511 (550)
T COG0028 436 GGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELE 511 (550)
T ss_pred cHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHH
Confidence 999853 4569999999999777777766 66643221111 1122 9999999999999999 899999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
.++++|++ .++|++||+.+.+.
T Consensus 512 ~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 512 EALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHHHHh----CCCCEEEEEEecCc
Confidence 99999997 68999999999765
No 64
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.72 E-value=2.4e-17 Score=141.30 Aligned_cols=118 Identities=25% Similarity=0.245 Sum_probs=91.3
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEE-EEeCCcccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~~ 125 (293)
..++.. .+.||+++|.|+|+++|. +++|||++|||+|++. ..+|.+|+++++|+++| ++|++|++....+
T Consensus 42 ~~~~~~~g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~ 114 (175)
T cd02009 42 VRVFANRGASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLLP 114 (175)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheecc
Confidence 345533 378999999999999984 6789999999999854 35599999999996555 5555577532111
Q ss_pred C---------cc---CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 D---------QF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 ~---------~~---~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
. .. ...|+.++|++||+++.+|+ +++++..+++++++ .++|++||+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 115 QASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred CCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 1 11 24689999999999999997 89999999998875 58999999976
No 65
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.70 E-value=4.1e-17 Score=163.97 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=97.1
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEE-EeCCcccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~ 125 (293)
..++.. .|+||+++|.|+|+++|. ++++||+++|||+|++. . .+|.||+++++|+++|| +|++|++....+
T Consensus 409 ~~~~~~~~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q 482 (588)
T TIGR01504 409 RHWINCGQAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-I-EELAVGAQHNIPYIHVLVNNAYLGLIRQAQ 482 (588)
T ss_pred CcEEeCCccccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHH
Confidence 445433 589999999999999886 78899999999999864 3 45999999999966555 555587532110
Q ss_pred C----------cc----------CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 D----------QF----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 ~----------~~----------~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. .. ...||.++|++||+.+.+|+ +++++.+++++|++.+++.++|+|||+.+.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 483 RAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred HHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 00 13699999999999999997 8999999999998644346899999999954
No 66
>PRK07586 hypothetical protein; Validated
Probab=99.70 E-value=1.5e-16 Score=157.35 Aligned_cols=150 Identities=25% Similarity=0.207 Sum_probs=106.3
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----ccccC-CCCCCcccc-cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHYG-SNKHNYFTV-SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~~-~~~~~~~~~-~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++..++.++....++. ..+.+. ..++. ..+..++.. .|+||+++|.|+|+++|. ++++|||++||
T Consensus 337 i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GD 412 (514)
T PRK07586 337 LTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVAC----PDRKVLALQGD 412 (514)
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCCcccccHHHHHHHHHHhC----CCCeEEEEEec
Confidence 56777877776544321 122221 11221 223444433 589999999999999986 68899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc-----c----------Ccc--CcccHHHHHhhcCceEEEEeC
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI-----S----------DQF--RSDGAVVKGRAYGVRSIRVDG 149 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~-----~----------~~~--~~~d~~~~a~a~G~~~~~VdG 149 (293)
|+|++. ..+|.+|++++||+++ |++|++|++.... . ... ...||.++|++||+++.+|+
T Consensus 413 Gsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~- 489 (514)
T PRK07586 413 GSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT- 489 (514)
T ss_pred hHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC-
Confidence 999853 4569999999999555 5566668764210 0 001 23689999999999999997
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 150 NDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 150 ~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
++.++..++++|++ .++|+|||+.+
T Consensus 490 -~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 490 -TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred -CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 78899998888875 58999999974
No 67
>PRK12474 hypothetical protein; Provisional
Probab=99.69 E-value=1.3e-16 Score=158.14 Aligned_cols=150 Identities=25% Similarity=0.230 Sum_probs=105.8
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccC-CCCCCccc-ccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYG-SNKHNYFT-VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~-~~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+.+..++.++....++ .+.+.+. ..++. ..+..++. .+|+||+++|.|+|+++|. ++++|||++||
T Consensus 341 i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~gsmG~glpaAiGa~lA~----p~r~vv~i~GD 416 (518)
T PRK12474 341 LNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAAGAAVAA----PDRKVVCPQGD 416 (518)
T ss_pred cCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHhhcccCCCCEEccCCCccCccHHHHHHHHHHC----CCCcEEEEEcC
Confidence 5677777776543332 1122221 11222 22334453 3589999999999999996 78899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc---------c------C--ccCcccHHHHHhhcCceEEEEeC
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---------S------D--QFRSDGAVVKGRAYGVRSIRVDG 149 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~---------~------~--~~~~~d~~~~a~a~G~~~~~VdG 149 (293)
|+|++. ..+|.||++++||+++||.|| +|++.... . . ..+..||.++|++||+++.+|+
T Consensus 417 G~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~- 493 (518)
T PRK12474 417 GGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT- 493 (518)
T ss_pred chhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeC-
Confidence 999864 355999999999955555555 58764211 0 0 0113589999999999999998
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 150 NDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 150 ~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
+++++..++++|++ .++|+|||+.+
T Consensus 494 -~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 494 -TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred -CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 78999999998875 58999999974
No 68
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.68 E-value=2.5e-16 Score=156.50 Aligned_cols=150 Identities=25% Similarity=0.302 Sum_probs=108.7
Q ss_pred CCHHHHHHHhhcCCCCC---CC--CCC---CccccCC-CCCCccc-ccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKADY---GK--GRQ---MPIHYGS-NKHNYFT-VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~--G~~---~~~h~~~-~~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+++..++..+....++. .. |.. +..++.. ....++. .+|+||+++|.|+|+++|. ++++|+|++||
T Consensus 359 l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GD 434 (530)
T PRK07092 359 LSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALAQ----PGRRVIGLIGD 434 (530)
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHhC----CCCeEEEEEeC
Confidence 56777787776654431 11 221 1113322 2234443 3689999999999999986 67899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc----------cCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~----------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|+|+++ .++|++|+++++|+++||.||+ |++.... .......|+.+++++||+++++|+ ++.++.
T Consensus 435 G~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~ 510 (530)
T PRK07092 435 GSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELA 510 (530)
T ss_pred chHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHH
Confidence 999976 3679999999999777777776 8764221 111235789999999999999998 678888
Q ss_pred HHHHHHHHHhhccCCcEEEEEEe
Q 022717 157 SAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
++++++++ .++|+|||+.+
T Consensus 511 ~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 511 DALARALA----ADGPVLVEVEV 529 (530)
T ss_pred HHHHHHHh----CCCCEEEEEEc
Confidence 77777764 68999999986
No 69
>PRK06154 hypothetical protein; Provisional
Probab=99.68 E-value=2.5e-16 Score=157.67 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=110.6
Q ss_pred CCHHHHHHHhhcCCC--C--CCCCCCCc-----cccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 18 FSMQEFANQCFGNKA--D--YGKGRQMP-----IHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~--~--~~~G~~~~-----~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
+.+..++.++..... + .+.+.|.. .++. ..+.+++.. .|+||+++|.|+|+++|. ++++|||++
T Consensus 381 l~p~~~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~----p~r~Vv~i~ 456 (565)
T PRK06154 381 INPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLAR----PDALVINLW 456 (565)
T ss_pred cCHHHHHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhC----CCCcEEEEE
Confidence 677778877765442 2 11122221 1222 223455543 589999999999999986 689999999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC--------ccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD--------QFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~--------~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|||+|++. ..+|.+|++++||+++||.|| +|++...... .....||.++|++||+++.+|+ +++++.
T Consensus 457 GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~ 532 (565)
T PRK06154 457 GDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLV 532 (565)
T ss_pred cchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHH
Confidence 99999854 345999999999966655555 5775421110 1113699999999999999998 899999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.++++|++..+ .++|+|||+.+.+
T Consensus 533 ~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 533 PALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred HHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 99999986433 4789999999854
No 70
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.68 E-value=3.1e-16 Score=157.24 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=95.4
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc-
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI- 124 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~- 124 (293)
..++. ..|+||+++|.|+|+++|. ++++|||++|||+|++. .+ +|.+|+++++|+++ |++|++|++....
T Consensus 399 ~~~~~~~~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~ 472 (574)
T PRK09124 399 RRLLGSFNHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MG-DFLSLVQLKLPVKIVVFNNSVLGFVAMEM 472 (574)
T ss_pred CeEEecCCcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HH-HHHHHHHhCCCeEEEEEeCCccccHHHHH
Confidence 44553 3589999999999999886 68899999999999863 34 59999999999555 5555557764110
Q ss_pred --------cCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 --------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 --------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.......||.++|++||+++.+|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 473 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 473 KAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred HhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011234689999999999999998 89999999998875 5889999999865
No 71
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.68 E-value=2.9e-16 Score=140.69 Aligned_cols=120 Identities=22% Similarity=0.250 Sum_probs=91.7
Q ss_pred cccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC--
Q 022717 51 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-- 126 (293)
Q Consensus 51 ~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~-- 126 (293)
.+...++||+++|.|+|++++. ++++|||++|||++ +++ .++|.+|+++++|+++||.||+ |++..-+..
T Consensus 57 ~~~~~gsmG~GlpaAiGa~~a~----p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~ 130 (235)
T cd03376 57 AFENAAAVASGIEAALKALGRG----KDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGS 130 (235)
T ss_pred hhcCHHHHHHHHHHHHHHhccC----CCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCC
Confidence 3445579999999999986653 78899999999995 554 3559999999999877777775 664211000
Q ss_pred -------------------ccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 127 -------------------QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 127 -------------------~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.....|+.++|+++|++++. +.-.+++++.+++++|++ .++|+|||+.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~ 200 (235)
T cd03376 131 TPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSP 200 (235)
T ss_pred CCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 11336999999999999874 455699999999999986 589999999874
No 72
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.68 E-value=1.5e-16 Score=160.11 Aligned_cols=119 Identities=22% Similarity=0.245 Sum_probs=95.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC----c--
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD----Q-- 127 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~----~-- 127 (293)
.|+||+++|.|+|+++|. +++.|||++|||+|++. . .+|.+|+++++|+++||.||+ |++....+. .
T Consensus 418 ~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~-~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~ 491 (591)
T PRK11269 418 AGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-I-EELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYC 491 (591)
T ss_pred cccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-H-HHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCcc
Confidence 589999999999999885 68899999999999863 3 459999999999776666665 765321100 0
Q ss_pred ----c----------CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 128 ----F----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 128 ----~----------~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+ ...||+++|++||+++.+|+ +++++..++++|++.+.+.++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 492 VQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 13689999999999999997 8999999999998654446899999999864
No 73
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.67 E-value=2.7e-16 Score=158.89 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=109.9
Q ss_pred CCCHHHHHHHhhcCCCCC--CCCCCC-----ccccCCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 17 GFSMQEFANQCFGNKADY--GKGRQM-----PIHYGSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~~--~~G~~~-----~~h~~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
++.+..++.++....++. ..+.|. ..|+...+..++.. .|+||+++|.|+|+++|. +++.||+++||
T Consensus 386 ~l~~~~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GD 461 (616)
T PRK07418 386 EIYPQEVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVAL----PDEEVICIAGD 461 (616)
T ss_pred CcCHHHHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHhC----CCCcEEEEEcc
Confidence 367777888776544431 112221 11232233445543 589999999999999986 78899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc----------Ccc--CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----------DQF--RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~----------~~~--~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
|+|++. ..+|.+|++++||+++||.||+ |++....+ ... ...||.++|++||+++++|+ ++++
T Consensus 462 G~f~m~--~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~e 537 (616)
T PRK07418 462 ASFLMN--IQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQ 537 (616)
T ss_pred hHhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 999853 3459999999999776666655 66532110 011 24689999999999999998 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.+++++|++ .++|+|||+.+.+
T Consensus 538 l~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 538 LKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred HHHHHHHHHh----CCCCEEEEEEecC
Confidence 9999988875 5789999999864
No 74
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.67 E-value=2.6e-16 Score=156.57 Aligned_cols=116 Identities=21% Similarity=0.307 Sum_probs=93.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc-----cC--
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI-----SD-- 126 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~-----~~-- 126 (293)
.++||+++|.|+|+++|. ++++||+++|||+|++. . .+|.+|++++||+++ |++|++|++.... ..
T Consensus 407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 480 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-S-MELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSS 480 (539)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-H-HHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcc
Confidence 579999999999999986 68899999999999863 3 459999999999555 5555567764211 10
Q ss_pred --ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 127 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 127 --~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
.+...||.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~~ 532 (539)
T TIGR02418 481 GVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDYS 532 (539)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 1235799999999999999998 79999999998875 58899999999653
No 75
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.67 E-value=4.1e-16 Score=135.74 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=88.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC-c----
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD-Q---- 127 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~-~---- 127 (293)
.++||+++|.|+|+++|. ++++||++.|||++ +++ ..+|.+|.++++|+++||.|| .|++...... .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 478999999999999886 78999999999994 543 345999999999966555555 5776432110 0
Q ss_pred -----------cCcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 128 -----------FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 128 -----------~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
....|+.++|+++|++++ ++.-.++.++.+++++|++ .++|++||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 013589999999999985 2233489999999999986 58999999976
No 76
>PRK08266 hypothetical protein; Provisional
Probab=99.67 E-value=2.8e-16 Score=156.50 Aligned_cols=118 Identities=27% Similarity=0.336 Sum_probs=95.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Ccccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~-------- 125 (293)
.|+||+++|.|+|++++. ++++|+|++|||+|+++ .++|.+|++++||+++||.|| +|++....+
T Consensus 401 ~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 489999999999998875 78899999999999876 356999999999977666555 687642111
Q ss_pred --CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 022717 126 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 184 (293)
Q Consensus 126 --~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~g 184 (293)
......|+.++|++||+++.+|+ +++++..+++++++ .++|+|||+.|+|...
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~ 529 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSE 529 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCC
Confidence 01124689999999999999998 68888888888875 5889999999987643
No 77
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.67 E-value=4.3e-16 Score=156.36 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=110.3
Q ss_pred CCHHHHHHHhhcCCCC---CCC--CCC-C--cccc-CCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGK--GRQ-M--PIHY-GSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~--G~~-~--~~h~-~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....+. ... |.. . ..++ ...+..++.. .|+||+++|.|+|+++|. ++++|||++|
T Consensus 381 l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~Vv~i~G 456 (579)
T TIGR03457 381 LHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAA----PDRPVVAYAG 456 (579)
T ss_pred cCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhC----CCCcEEEEEc
Confidence 6677788777654432 112 221 1 1122 2233455543 489999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc-----C-----ccCc-ccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS-----D-----QFRS-DGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~-----~-----~~~~-~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. . .+|.+|++++||+++ |++|++|++....+ . .... .||.++|++||+++.+|+ ++++
T Consensus 457 DG~f~m~-~-~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~e 532 (579)
T TIGR03457 457 DGAWGMS-M-NEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPED 532 (579)
T ss_pred chHHhcc-H-HHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999864 3 459999999999655 55555687542110 0 1122 499999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+..++++|++.. +.++|+|||+.+.+.
T Consensus 533 l~~al~~a~~~~-~~~~p~lieV~v~~~ 559 (579)
T TIGR03457 533 VGPALKKAIAAQ-AEGKTTVIEIVCTRE 559 (579)
T ss_pred HHHHHHHHHhhC-CCCCcEEEEEEeCCC
Confidence 999999998643 247899999999653
No 78
>PRK07064 hypothetical protein; Provisional
Probab=99.66 E-value=4.7e-16 Score=154.91 Aligned_cols=114 Identities=21% Similarity=0.293 Sum_probs=92.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEE-EEeCCcccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~~-------- 125 (293)
.|+||+++|.|+|+++|. +++.|++++|||+|++. ..+|.+|+++++|+++| ++|++|++....+
T Consensus 404 ~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~ 477 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRR 477 (544)
T ss_pred CCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCcc
Confidence 579999999999999985 68899999999999863 34599999999996555 5555687642111
Q ss_pred --CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 126 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 126 --~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
......||.++|++||+++.+|+ +++++..+++++++ .++|+|||+.++
T Consensus 478 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 478 YYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 11234689999999999999997 78899999998875 578999999986
No 79
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.66 E-value=5.2e-16 Score=156.26 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=109.0
Q ss_pred CCHHHHHHHhhcCCC--C--CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 18 FSMQEFANQCFGNKA--D--YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~--~--~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
+.+..++.++..... + ...+.|. ..|+.. ++..++.. .|+||+++|.|+|+++|. +++.||+++
T Consensus 380 l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~ 455 (595)
T PRK09107 380 IMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAH----PDALVIDIA 455 (595)
T ss_pred cCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhC----CCCeEEEEE
Confidence 566777777765442 2 1122221 112222 33455543 489999999999999986 788999999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc---------cCc--cCcccHHHHHhhcCceEEEEeCCCHH
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI---------SDQ--FRSDGAVVKGRAYGVRSIRVDGNDAL 153 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~---------~~~--~~~~d~~~~a~a~G~~~~~VdG~D~~ 153 (293)
|||+|++. . .+|.+|++++||+++||.||+ |++.... ... ....||.++|++||+++.+|+ +++
T Consensus 456 GDG~f~m~-~-~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~ 531 (595)
T PRK09107 456 GDASIQMC-I-QEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPG 531 (595)
T ss_pred cCchhhcc-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEEC--CHH
Confidence 99999863 3 459999999999766666555 7653211 111 124699999999999999997 899
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 154 AIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 154 ~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++.+++++|++ .++|+|||+.+.+
T Consensus 532 el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 532 DLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred HHHHHHHHHHh----CCCCEEEEEEecC
Confidence 99999998885 5889999999965
No 80
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.66 E-value=4.1e-16 Score=156.25 Aligned_cols=152 Identities=18% Similarity=0.227 Sum_probs=109.3
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.+. ..++.. .+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 373 l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~----p~~~vv~i~G 448 (570)
T PRK06725 373 LKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAK----EEELVICIAG 448 (570)
T ss_pred cCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhhc----CCCeEEEEEe
Confidence 6677788777654432 1122221 112222 23445533 489999999999999885 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc----------CccCcccHHHHHhhcCceEEEEeCCCHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAI 155 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~----------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v 155 (293)
||+|++. .+| |.+|++++||+++||.||+ |++....+ ......|+.++|++||+++.+|+ +++++
T Consensus 449 DG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l 524 (570)
T PRK06725 449 DASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEA 524 (570)
T ss_pred cchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHH
Confidence 9999753 444 9999999999777777776 65532110 11234789999999999999996 89999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
..+++++++ .++|+|||+.+.+
T Consensus 525 ~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 525 KQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred HHHHHHHHh----CCCCEEEEEEeCC
Confidence 888888875 5899999999964
No 81
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.66 E-value=6.9e-16 Score=154.88 Aligned_cols=122 Identities=24% Similarity=0.310 Sum_probs=96.4
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccc---
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--- 122 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~--- 122 (293)
.+++. ..|+||+++|.|+|+++|. ++++|||++|||+|+++ .. +|.+|+++++|+++||.||+ |++..
T Consensus 399 ~~~~~s~~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~-el~Ta~~~~lpv~~vV~NN~~~g~i~~~q 472 (578)
T PRK06546 399 RRVIGSFRHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LG-ELLTVKLYDLPVKVVVFNNSTLGMVKLEM 472 (578)
T ss_pred ceEEccCCcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HH-HHHHHHHhCCCeEEEEEECCccccHHHHH
Confidence 34443 3589999999999999986 68899999999999863 34 49999999999776666665 66531
Q ss_pred -----ccc-CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 123 -----PIS-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 123 -----~~~-~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+.. ......||.++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+.
T Consensus 473 ~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~ 532 (578)
T PRK06546 473 LVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDPN 532 (578)
T ss_pred HhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 000 11235799999999999999998 89999999998876 68999999998643
No 82
>PRK05858 hypothetical protein; Provisional
Probab=99.66 E-value=3.9e-16 Score=155.53 Aligned_cols=152 Identities=16% Similarity=0.052 Sum_probs=108.6
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.+. ..|+.. .+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 358 l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~----p~r~vv~i~G 433 (542)
T PRK05858 358 IHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLAR----PSRQVVLLQG 433 (542)
T ss_pred cCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHhC----CCCcEEEEEc
Confidence 5667777777654433 1122221 113322 22344433 589999999999999886 7889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEE-EeCCcccccccc----------CccCcccHHHHHhhcCceEEEEeCCCHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAI 155 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~~----------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v 155 (293)
||+|++. .+ +|.+|+++++|+++|| +|+.|++..... ......||.++|++||+.+.+|+ +++++
T Consensus 434 DG~f~~~-~~-eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL 509 (542)
T PRK05858 434 DGAFGFS-LM-DVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGELVT--VPAEL 509 (542)
T ss_pred CchhcCc-HH-HHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHH
Confidence 9999864 44 5999999999965555 555577532110 11135799999999999999998 89999
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.+++++|++ .++|+|||+.|.+
T Consensus 510 ~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 510 GPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred HHHHHHHHh----CCCcEEEEEEECC
Confidence 999999886 5899999999954
No 83
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.66 E-value=6.6e-16 Score=154.10 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=109.0
Q ss_pred CCCHHHHHHHhhcCCCC---CCCCCCC----c-cccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCC-CceEEEE
Q 022717 17 GFSMQEFANQCFGNKAD---YGKGRQM----P-IHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRK-DACAVTY 84 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~---~~~G~~~----~-~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~-~~~vv~~ 84 (293)
.+++..++.++....++ ...+.+. . .++.. .+.+++.. .|+||+++|.|+|+++|. + +++|||+
T Consensus 346 ~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~~Vv~i 421 (549)
T PRK06457 346 PMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAV----ENKRQVISF 421 (549)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcC----CCCCeEEEE
Confidence 46777788777654433 1112221 1 12221 23344443 589999999999999886 5 7899999
Q ss_pred eCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc---------cCccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 85 FGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI---------SDQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 85 ~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~---------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
+|||+|++. ..+|.+|++++||+++ |++|++|++.... .......||.++|++||+++.+|+ ++++
T Consensus 422 ~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~e 497 (549)
T PRK06457 422 VGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKE 497 (549)
T ss_pred EcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 999999853 3559999999999555 5555567753211 111224689999999999999998 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..+++++++ .++|+|||+.+.+
T Consensus 498 l~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 498 AEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred HHHHHHHHHh----CCCCEEEEEEeCc
Confidence 9999999875 5889999999964
No 84
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.66 E-value=3.7e-16 Score=139.83 Aligned_cols=122 Identities=23% Similarity=0.308 Sum_probs=91.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCc------
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ------ 127 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~------ 127 (293)
..|+-+.++++|+|+|.|..+.+.+..||+++||||+.-|+.+||||.|+..+-++|+|++||+.+|+.+....
T Consensus 109 ~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~ 188 (270)
T PF13292_consen 109 GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSK 188 (270)
T ss_dssp --SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC---
T ss_pred cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHh
Confidence 36899999999999999999999999999999999999999999999999999999999999999887543210
Q ss_pred -c--------C-------------------cc-cH----HHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcE
Q 022717 128 -F--------R-------------------SD-GA----VVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPI 173 (293)
Q Consensus 128 -~--------~-------------------~~-d~----~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~ 173 (293)
. . .. .+ ..+++.+|+.++- |||||..++.++++.+.+ -++|+
T Consensus 189 l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPv 264 (270)
T PF13292_consen 189 LRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAKD----IDGPV 264 (270)
T ss_dssp ----------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEE
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCE
Confidence 0 0 00 00 1246777998886 899999999988887764 69999
Q ss_pred EEEEEe
Q 022717 174 LIEALT 179 (293)
Q Consensus 174 lIe~~t 179 (293)
+|+++|
T Consensus 265 llHV~T 270 (270)
T PF13292_consen 265 LLHVIT 270 (270)
T ss_dssp EEEEE-
T ss_pred EEEEeC
Confidence 999987
No 85
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.65 E-value=4.3e-16 Score=156.17 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=108.5
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.|. ..|+.. .+..++.. .|+||+++|.|+|+++|. +++.|||++|
T Consensus 372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~i~G 447 (572)
T PRK08979 372 IKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAM----PDETVVCVTG 447 (572)
T ss_pred cCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhhC----CCCeEEEEEc
Confidence 5667777777654432 1122221 112222 23455543 479999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc---------cCc-c-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---------SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~---------~~~-~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ..+|.+|++++||+++||.|| +|++.... ... . ...||.++|++||+++.+|+ ++.+
T Consensus 448 DG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~e 523 (572)
T PRK08979 448 DGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDE 523 (572)
T ss_pred chHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999864 345999999999966555555 57653211 011 1 24689999999999999998 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..++++|++. .++|+|||+.+.+
T Consensus 524 L~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 524 LESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred HHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 99999988751 3789999999965
No 86
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.65 E-value=5.4e-16 Score=154.42 Aligned_cols=151 Identities=18% Similarity=0.180 Sum_probs=107.0
Q ss_pred CCHHHHHHHhhcCCCC---CC--CCCCC--ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YG--KGRQM--PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~--~G~~~--~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+.+..++..+....++ .. .|... ..++.. .+.+++.. .|+||+++|.|+|+++|. ++++|||++||
T Consensus 356 l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~i~GD 431 (539)
T TIGR03393 356 LSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTAC----PNRRVILLIGD 431 (539)
T ss_pred cCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhcC----CCCCeEEEEcC
Confidence 6677777777654432 11 12211 112211 22344432 489999999999999885 78899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCE-EEEEEeCCcccccccc------CccCcccHHHHHhhcCce----EEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPIS------DQFRSDGAVVKGRAYGVR----SIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpv-i~vi~NN~~~~~~~~~------~~~~~~d~~~~a~a~G~~----~~~VdG~D~~~v~ 156 (293)
|+|++. ..+|.+|+++++|+ ++|++|++|++..... ......||.++|++||++ +.+|+ ++.++.
T Consensus 432 G~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~ 507 (539)
T TIGR03393 432 GSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLA 507 (539)
T ss_pred cHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHH
Confidence 999853 45699999999995 5566666687643111 112346999999999996 88897 788999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEee
Q 022717 157 SAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
++++++++ .++|+|||+.+.
T Consensus 508 ~al~~a~~----~~~p~liev~i~ 527 (539)
T TIGR03393 508 DVLEKVAA----HERLSLIEVVLP 527 (539)
T ss_pred HHHHHHhc----cCCeEEEEEEcC
Confidence 98888875 589999999984
No 87
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.65 E-value=1e-15 Score=153.48 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=109.0
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCC---C--ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQ---M--PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~---~--~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++.....+. ..+.+ . ..++.. ....++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 359 i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~----p~r~Vv~i~G 434 (575)
T TIGR02720 359 LQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNY----PDRQVFNLAG 434 (575)
T ss_pred cCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhC----CCCcEEEEEc
Confidence 66777777776544321 11222 1 112221 22344443 589999999999998886 7889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc----c-----CccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI----S-----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~----~-----~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
||+|++. ..+|.+++++++|+++ |++||+|++.... . ......||.++|++||+++.+|+ +.+++.
T Consensus 435 DGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~ 510 (575)
T TIGR02720 435 DGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLP 510 (575)
T ss_pred ccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHH
Confidence 9999863 3459999999999665 5666668863211 0 11235789999999999999997 788999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
++++++++ + +.++|+|||+++..
T Consensus 511 ~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 511 AVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred HHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 99999885 2 35889999999854
No 88
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.65 E-value=8.6e-16 Score=154.07 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=110.0
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.|. ..|+.. .+..++.. .|+||+++|.|+|+++|. +++.||+++|
T Consensus 372 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~i~G 447 (574)
T PRK07979 372 IKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMAL----PEETVVCVTG 447 (574)
T ss_pred cCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhC----CCCeEEEEEc
Confidence 6677777777654332 1122221 112222 23445543 489999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc---------cCc--cCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---------SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~---------~~~--~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ..+|.+|++++||+++||.|| +|++.... ... ....||.++|++||+++.+|+ ++++
T Consensus 448 DG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~e 523 (574)
T PRK07979 448 DGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDE 523 (574)
T ss_pred chhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHH
Confidence 9999853 356999999999966655555 57653211 111 124699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..++++|++.++ .++|+|||+.+.+
T Consensus 524 L~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 524 LESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred HHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 9999999987433 3789999999965
No 89
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.65 E-value=7.7e-16 Score=154.41 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=108.0
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.+. ..++. ..+..++.. .|+||+++|.|+|+++|. ++++|||++|
T Consensus 374 l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~----p~r~Vv~i~G 449 (574)
T PRK06466 374 IKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAF----PDQDVACVTG 449 (574)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhC----CCCeEEEEEc
Confidence 5667788877654332 1112221 11222 223444432 489999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEE-EEeCCccccccc---------cCc--cCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPI---------SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~---------~~~--~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. . .+|.+|.++++|+++| ++|++|++.... ... ....||.++|++||+++.+|+ ++++
T Consensus 450 DG~f~m~-~-~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~e 525 (574)
T PRK06466 450 EGSIQMN-I-QELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKD 525 (574)
T ss_pred chhhhcc-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999863 3 4599999999996655 555557753211 001 124699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..++++|++. .++|+|||+.+.+
T Consensus 526 l~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 526 LKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred HHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 99999988852 2789999999965
No 90
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.65 E-value=8e-16 Score=153.73 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=108.4
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCCC-CCCccc-ccccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGSN-KHNYFT-VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~~-~~~~~~-~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+.+..++.++....++ .+.+.+. ..++... ...++. ..|+||+++|.|+|++++. ++++|||++||
T Consensus 367 ~~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~vv~i~GD 442 (557)
T PRK08199 367 VQLGEVMAWLRERLPADAIITNGAGNYATWLHRFFRFRRYRTQLAPTSGSMGYGLPAAIAAKLLF----PERTVVAFAGD 442 (557)
T ss_pred cCHHHHHHHHHHhCCCCeEEEECChHHHHHHHHhcCcCCCCeEECCCCccccchHHHHHHHHHhC----CCCcEEEEEcc
Confidence 6677777777654443 1222221 1122222 222332 3689999999999998875 68899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc----------CccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~----------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
|+|++. .++|.+|+++++|+++||.||+ |++....+ ......|+.++|++||+++.+|+ +++++.
T Consensus 443 Gsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~ 518 (557)
T PRK08199 443 GCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFA 518 (557)
T ss_pred hHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHH
Confidence 999853 3569999999999887777776 77532110 11134689999999999999998 788888
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
++++++++ .++|+|||+.+.+.
T Consensus 519 ~al~~a~~----~~gp~li~v~~~~~ 540 (557)
T PRK08199 519 PAFERALA----SGKPALIEIRIDPE 540 (557)
T ss_pred HHHHHHHh----CCCCEEEEEEeCHH
Confidence 88888774 68999999999653
No 91
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.65 E-value=3.4e-16 Score=157.37 Aligned_cols=157 Identities=16% Similarity=0.185 Sum_probs=110.6
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----cccc-CCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHY-GSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~-~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+++..++.++...... ...+.+. ..++ ...+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 386 i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~----p~r~vv~i~G 461 (588)
T PRK07525 386 MHPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIAC----PDRPVVGFAG 461 (588)
T ss_pred cCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHhC----CCCcEEEEEc
Confidence 6666777766554432 1112221 1122 2233455543 589999999999999886 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEE-EeCCccccccc-----cC-----cc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI-----SD-----QF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~-----~~-----~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|+++ ..| |.+|+++++|+++|| +|++|++.... .. .. ...||.++|++||+++++|+ ++++
T Consensus 462 DG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~e 537 (588)
T PRK07525 462 DGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEE 537 (588)
T ss_pred CchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999875 444 899999999966655 55578753211 00 11 23699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
+..+++++++.. +.++|+|||+.+.+..
T Consensus 538 l~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 538 LGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred HHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 999999998743 2368999999997544
No 92
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.65 E-value=5.2e-16 Score=156.05 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=108.3
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++..+....++ .+.+.|. ..|+.. .+..++.. .|+||+++|.|+|+++|. +++.||+++|
T Consensus 388 i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~G 463 (587)
T PRK06965 388 IKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAH----PDDDVVCITG 463 (587)
T ss_pred cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEEEEEc
Confidence 5666777777654432 1222221 112222 23445533 479999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc---------cCc-c-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI---------SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~---------~~~-~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ..+|.+|+++++|+++||.||+ |++.... ... . ..+||.++|++||+++.+|+ ++.+
T Consensus 464 DGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~e 539 (587)
T PRK06965 464 EGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSD 539 (587)
T ss_pred chhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHH
Confidence 9999864 3559999999999666555554 6543211 011 1 24699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.+++++|++. .++|+|||+.+.+
T Consensus 540 L~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 540 VEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred HHHHHHHHHhc---CCCcEEEEEEecc
Confidence 99999998862 3689999999964
No 93
>PRK08322 acetolactate synthase; Reviewed
Probab=99.65 E-value=9.8e-16 Score=152.68 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=95.4
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCccccccc-
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPI- 124 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~- 124 (293)
..++.. .|+||+++|.|+|+++|. ++++|++++|||+|++. ..+|.+|+++++|++ +|++|++|++....
T Consensus 397 ~~~~~~~~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~ 470 (547)
T PRK08322 397 NTCLLDNALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQ 470 (547)
T ss_pred CCEEcCCCcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHH
Confidence 444543 479999999999999886 78899999999999854 345999999999955 55566668764211
Q ss_pred ----c----CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 ----S----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 ----~----~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. .....+||.++|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 471 ~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 471 ENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred HhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 11234699999999999999997 79999999998875 5899999999854
No 94
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.65 E-value=1.2e-15 Score=153.07 Aligned_cols=152 Identities=22% Similarity=0.271 Sum_probs=108.2
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----ccccCC-CC-CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHYGS-NK-HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~~~-~~-~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
+.+..++.++....+.. ..+.+. ..++.. ++ .+++.. .++||+++|.|+|+++|. ++++|||++
T Consensus 387 i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~----~~~~vv~i~ 462 (578)
T PRK06112 387 IRPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVAR----PGAPVICLV 462 (578)
T ss_pred cCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhC----CCCcEEEEE
Confidence 56677777776654431 112221 112222 22 245543 479999999999998875 688999999
Q ss_pred CcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC----------ccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 86 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD----------QFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~----------~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
|||+|++ ..++|++|+++++|+++||.||+ |++....+. .....||.++|++||+++++|+ ++++
T Consensus 463 GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~e 538 (578)
T PRK06112 463 GDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAE 538 (578)
T ss_pred cchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 9999974 56779999999999877777775 443221110 1124689999999999999998 6888
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.++++++++ .++|+|||+++.+
T Consensus 539 l~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 539 LAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred HHHHHHHHHh----CCCCEEEEEEcCc
Confidence 8888888875 5899999999854
No 95
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=153.75 Aligned_cols=155 Identities=20% Similarity=0.152 Sum_probs=109.7
Q ss_pred CCCHHHHHHHhhcCCCC---CCCCCCC-----ccccCCC-CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEe
Q 022717 17 GFSMQEFANQCFGNKAD---YGKGRQM-----PIHYGSN-KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYF 85 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~~-~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~ 85 (293)
++.+..++.++....+. .+.+.|. ..++..+ ...++.. .|+||+++|.|+|+++|. ++++|||++
T Consensus 365 ~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~----p~~~Vv~i~ 440 (597)
T PRK08273 365 PVNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAH----PDRPVIALV 440 (597)
T ss_pred CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhC----CCCcEEEEE
Confidence 47788888877654432 1122221 1122222 2334433 489999999999999986 688999999
Q ss_pred CcccccchHHHHHHHHHhhc-----CCCEEEEEEeC-Cccccccc------------cCccCcccHHHHHhhcCceEEEE
Q 022717 86 GDGGTSEGDFHAALNFSAVT-----EAPVIFICRNN-GWAISTPI------------SDQFRSDGAVVKGRAYGVRSIRV 147 (293)
Q Consensus 86 GDGa~~~G~~~Eal~~A~~~-----~lpvi~vi~NN-~~~~~~~~------------~~~~~~~d~~~~a~a~G~~~~~V 147 (293)
|||+|++... .+|.+|+++ +||+++||.|| +|++.... .......||.++|++||+++.+|
T Consensus 441 GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v 519 (597)
T PRK08273 441 GDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRV 519 (597)
T ss_pred cchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEE
Confidence 9999975323 459999999 89977666666 57643211 00113468999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 148 DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 148 dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+ +++++..++++|++ .++|+|||+.+.+.
T Consensus 520 ~--~~~eL~~al~~a~~----~~~p~lIeV~~~~~ 548 (597)
T PRK08273 520 D--DPEQLGAAWDEALA----ADRPVVLEVKTDPN 548 (597)
T ss_pred C--CHHHHHHHHHHHHh----CCCCEEEEEEeCCC
Confidence 8 78999999999885 58999999999653
No 96
>PRK08611 pyruvate oxidase; Provisional
Probab=99.64 E-value=1.2e-15 Score=153.06 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=108.1
Q ss_pred CCHHHHHHHhhcCCCCC---C--CCCCC---ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---G--KGRQM---PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~--~G~~~---~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++.....+. . .|... ..|+.. ...+++.. .|+||+++|.|+|+++|. +++.||+++|
T Consensus 359 i~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv~i~G 434 (576)
T PRK08611 359 IKPERVMAAIQKIADDDAVLSVDVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAF----PDRQAIAICG 434 (576)
T ss_pred cCHHHHHHHHhhhcCCCeEEEEcChHHHHHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhC----CCCcEEEEEc
Confidence 56677777775544331 1 12211 112222 22344432 489999999999999886 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEE-EEEEeCCccccccc---------cCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPI---------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~---------~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
||+|++. ..+|.+|+++++|++ +|++|++|++.... .......||.++|++||+++.+|+ +++++.
T Consensus 435 DGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~ 510 (576)
T PRK08611 435 DGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELD 510 (576)
T ss_pred ccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHH
Confidence 9999864 355999999999955 55555567753210 111235799999999999999997 799999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeec
Q 022717 157 SAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 157 ~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.+++++++ .++|++||+.+.+
T Consensus 511 ~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 511 PAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred HHHHHHHh----CCCCEEEEEEeCC
Confidence 99988875 5899999999965
No 97
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.64 E-value=1.6e-15 Score=152.14 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=92.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccc---------c
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 124 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~---------~ 124 (293)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . ++|.+|+++++|+++||.||+ |++... .
T Consensus 420 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~ 493 (574)
T PRK06882 420 AGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN-I-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRH 493 (574)
T ss_pred cccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcc
Confidence 589999999999999986 67899999999999864 3 569999999999777666665 554211 0
Q ss_pred cCc--cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 ~~~--~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
... ....|+.++|++||+++++|+ +.+++..+++++++. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 494 SQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 111 124689999999999999998 788999999888862 3789999999975
No 98
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.64 E-value=8.7e-16 Score=153.90 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=108.6
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCCc-----cccC-CCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQMP-----IHYG-SNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~~-----~h~~-~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..+++++....++ ...+.+.+ .++. ..+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 372 i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~----p~~~vv~i~G 447 (572)
T PRK06456 372 LKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLAR----PDKVVVDLDG 447 (572)
T ss_pred cCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhC----CCCeEEEEEc
Confidence 6677777777554432 11222211 1221 123455543 589999999999999986 6789999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC----------cc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD----------QF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~----------~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. . .+|.+|+++++|+++||.|| +|++....+. .. ...||.++|++||+++.+|+ ++++
T Consensus 448 DG~f~m~-~-~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~e 523 (572)
T PRK06456 448 DGSFLMT-G-TNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYED 523 (572)
T ss_pred cchHhcc-h-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHH
Confidence 9999864 3 45999999999966555555 5776431110 11 24699999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.+++++|++ .++|+|||+.+.+
T Consensus 524 L~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 524 IEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred HHHHHHHHHh----CCCCEEEEEEeCc
Confidence 9999988875 5899999999975
No 99
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.64 E-value=1.3e-15 Score=153.21 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=108.6
Q ss_pred CCCHHHHHHHhhcCCCC--CCCCCCC-----ccccCCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 17 GFSMQEFANQCFGNKAD--YGKGRQM-----PIHYGSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 17 G~~~~~~~~~~~g~~~~--~~~G~~~-----~~h~~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
++.+..++.++....++ ...+.+. ..++...+..++.. .|+||+++|.|+|+++|. ++++|++++||
T Consensus 382 ~l~~~~~~~~l~~~~~d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala~----p~~~vv~i~GD 457 (585)
T CHL00099 382 SLSPQEVINEISQLAPDAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAH----PNELVICISGD 457 (585)
T ss_pred CcCHHHHHHHHHhhCCCeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHhC----CCCeEEEEEcc
Confidence 36677778777654332 1122221 11222233445543 589999999999999986 68899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc---------cC---ccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI---------SD---QFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~---------~~---~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
|+|++. ..+|.+|+++++|+++||.||+ |++.... .. .....|+.+++++||+++++|+ ++++
T Consensus 458 G~f~m~--~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~e 533 (585)
T CHL00099 458 ASFQMN--LQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKD 533 (585)
T ss_pred hhhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHH
Confidence 999853 3559999999999777666665 5542110 00 1124689999999999999998 7889
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.+++++|++ .++|+|||+.+.+
T Consensus 534 l~~al~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 534 LKSSLKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred HHHHHHHHHh----CCCCEEEEEEECC
Confidence 9888888875 6899999999963
No 100
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.64 E-value=1.9e-15 Score=151.56 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=106.7
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----ccccCCC-CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHYGSN-KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~~~~-~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....+.. ..+.+. ..|+..+ +..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 375 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~----p~~~vv~i~G 450 (571)
T PRK07710 375 IKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAK----PDETVVAIVG 450 (571)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEEEEEc
Confidence 56667777765543221 112121 1133222 2344433 489999999999999986 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc-----c------CccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI-----S------DQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~-----~------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ++| |++|+++++|+++ |++|++|++.... . ......|+.++|++||+++.+|+ +.++
T Consensus 451 DGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~e 526 (571)
T PRK07710 451 DGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRID--DELE 526 (571)
T ss_pred chHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999863 455 9999999999655 5555557754211 0 11134689999999999999998 6888
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+..++++|++ .++|++||+.+.+
T Consensus 527 l~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 527 AKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHHHHh----CCCCEEEEEEecC
Confidence 8888887775 6899999999975
No 101
>PLN02573 pyruvate decarboxylase
Probab=99.64 E-value=1.2e-15 Score=153.01 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=92.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc----CccC
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS----DQFR 129 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~----~~~~ 129 (293)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++ |++|++|++..... ....
T Consensus 427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~ 500 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIK 500 (578)
T ss_pred hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccC
Confidence 589999999999999986 68899999999999853 3559999999999555 55555688643211 1123
Q ss_pred cccHHHHHhhcC-----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 130 SDGAVVKGRAYG-----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 130 ~~d~~~~a~a~G-----~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
..||.++|++|| +++.+|+ +++++.+++++|++. +.++|+|||+++.
T Consensus 501 ~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 501 NWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 478999999995 8999998 789999999998742 2488999999984
No 102
>PLN02470 acetolactate synthase
Probab=99.64 E-value=1.5e-15 Score=152.69 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=94.9
Q ss_pred CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEE-EeCCccccccc
Q 022717 48 KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI 124 (293)
Q Consensus 48 ~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi-~NN~~~~~~~~ 124 (293)
+.+++.. .|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++|| +|++|++....
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~ 489 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQW 489 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHH
Confidence 3455543 489999999999999986 68899999999999864 355999999999966555 55557643210
Q ss_pred ---------cCc-cC--------cccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 ---------SDQ-FR--------SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 ---------~~~-~~--------~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
... .. ..||.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 490 EDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred HHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 000 11 2699999999999999997 79999999999876 5789999999964
No 103
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.63 E-value=1.8e-15 Score=151.33 Aligned_cols=152 Identities=20% Similarity=0.215 Sum_probs=107.8
Q ss_pred CCHHHHHHHhhcCCCCC--CCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCc
Q 022717 18 FSMQEFANQCFGNKADY--GKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGD 87 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~--~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GD 87 (293)
+.+..++.++....++. ..+.+. ..|+.. .+..++.. .|+||+++|.|+|+++|. ++++|||++||
T Consensus 366 l~~~~~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GD 441 (561)
T PRK06048 366 IKPQYVIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGK----PDKTVIDIAGD 441 (561)
T ss_pred cCHHHHHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHhC----CCCcEEEEEeC
Confidence 45666777776544331 112111 113322 23445543 479999999999999986 68899999999
Q ss_pred ccccchHHHHHHHHHhhcCCCEEEEEE-eCCccccccc---------c-Cc-cCcccHHHHHhhcCceEEEEeCCCHHHH
Q 022717 88 GGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPI---------S-DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAI 155 (293)
Q Consensus 88 Ga~~~G~~~Eal~~A~~~~lpvi~vi~-NN~~~~~~~~---------~-~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v 155 (293)
|+|++. . .+|.+|+++++|+++||. |++|++.... . .. ....|+.++|++||+++.+|+ ++.++
T Consensus 442 G~f~m~-~-~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el 517 (561)
T PRK06048 442 GSFQMN-S-QELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEV 517 (561)
T ss_pred chhhcc-H-HHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHH
Confidence 999864 3 459999999999665554 4457653210 0 11 135789999999999999998 78899
Q ss_pred HHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 156 YSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 156 ~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.+++++|++ .++|+|||+.+.+
T Consensus 518 ~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 518 RPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred HHHHHHHHh----CCCCEEEEEEecC
Confidence 999999885 5899999999965
No 104
>PRK08617 acetolactate synthase; Reviewed
Probab=99.63 E-value=1.9e-15 Score=150.84 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=92.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEE-EEEeCCcccccccc-----C--
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPIS-----D-- 126 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~~-----~-- 126 (293)
.++||+++|.|+|+++|. +++.|+|++|||+|++. ..+|.+|+++++|+++ |++|++|++....+ .
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 579999999999999886 78899999999999853 3459999999999665 55555576532110 0
Q ss_pred --ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 127 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 127 --~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.....||.++|++||+++.+|. +++++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 1134689999999999999997 79999999988875 5789999999865
No 105
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.63 E-value=3.3e-15 Score=145.87 Aligned_cols=130 Identities=21% Similarity=0.261 Sum_probs=107.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHh-hcCCCEEEEEEeCCccccccccCc-----
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGWAISTPISDQ----- 127 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~-~~~lpvi~vi~NN~~~~~~~~~~~----- 127 (293)
.+|+-++++++|+|+|.|+.+++.++.||+++||||++-|+.+||||.|. ..+-|+|+|++||..+|+.+....
T Consensus 113 ~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~ 192 (627)
T COG1154 113 GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLA 192 (627)
T ss_pred ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHH
Confidence 46899999999999999999999999999999999999999999999998 445689999999999988554210
Q ss_pred --cC----------c------------------c-cH------HHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhcc
Q 022717 128 --FR----------S------------------D-GA------VVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGE 169 (293)
Q Consensus 128 --~~----------~------------------~-d~------~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~ 169 (293)
.. . . .+ ..+++.+|+.++- +||||++++..+++.+.+ .
T Consensus 193 ~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~ 268 (627)
T COG1154 193 RLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----L 268 (627)
T ss_pred HHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----C
Confidence 00 0 0 00 1267889999986 899999999999888876 6
Q ss_pred CCcEEEEEEeecCCCCCC
Q 022717 170 GRPILIEALTYRVGHHTT 187 (293)
Q Consensus 170 ~gP~lIe~~t~R~~gHs~ 187 (293)
++|+||+++|-+..|...
T Consensus 269 ~gPvllHv~T~KGKGY~p 286 (627)
T COG1154 269 KGPVLLHVVTKKGKGYKP 286 (627)
T ss_pred CCCEEEEEEecCCCCCCh
Confidence 999999999987766543
No 106
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.62 E-value=2.1e-15 Score=150.36 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=108.1
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----cccc-CCCCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHY-GSNKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~-~~~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....... ..+.+. ..++ ...+..++.. .|+||+++|.|+|+++|. ++++||+++|
T Consensus 352 ~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~----p~~~vv~i~G 427 (548)
T PRK08978 352 IYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVAR----PDDTVICVSG 427 (548)
T ss_pred cCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHhC----CCCcEEEEEc
Confidence 56667777665544321 112211 1122 1233455543 489999999999999886 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc---------c-Ccc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI---------S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~---------~-~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. . .+|.+|+++++|+++ |++|++|++.... . ... ...||.++|++||+++.+|+ ++++
T Consensus 428 DG~f~~~-~-~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~e 503 (548)
T PRK08978 428 DGSFMMN-V-QELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQ 503 (548)
T ss_pred cchhhcc-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999864 3 459999999999555 5555567653211 0 111 24689999999999999997 8999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+.++++++++ .++|+|||+.+.+.
T Consensus 504 l~~al~~a~~----~~~p~lIeV~id~~ 527 (548)
T PRK08978 504 VEAALDTLLN----SEGPYLLHVSIDEL 527 (548)
T ss_pred HHHHHHHHHh----CCCCEEEEEEecCc
Confidence 9999988875 58899999999753
No 107
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.62 E-value=3.2e-15 Score=149.65 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=96.7
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS 125 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~ 125 (293)
.+++.. .|+||+++|.|+|+++|. ++++|+|++|||+|++. ++| |.+|+++++|+++||.||+ |++....+
T Consensus 410 ~~~~~~~~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q 483 (564)
T PRK08155 410 RQWLTSGGLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQ 483 (564)
T ss_pred CeEEeCCCcccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHH
Confidence 455543 479999999999999986 67899999999999874 555 9999999999777666665 87643211
Q ss_pred ----------Ccc-CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 ----------DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 ----------~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
... ...|+.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 484 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 484 SLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred HHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111 24689999999999999998 78899888888875 5889999999964
No 108
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.62 E-value=3.7e-15 Score=148.90 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=91.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccc------c-c-cc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS------T-P-IS 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~------~-~-~~ 125 (293)
.|+||+++|.|+|+++|. +++||+++|||+|++. . .+|.||+++++|+++||.||+ |... . . ..
T Consensus 416 ~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~-~-~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFS-G-MEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhccc-H-HHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 589999999999999972 6789999999999864 3 449999999999777777775 4211 0 0 00
Q ss_pred Ccc-CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 ~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
... ...||.++|++||+++++|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 111 35689999999999999997 89999999998875 5789999999864
No 109
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.62 E-value=4.1e-15 Score=148.84 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=107.9
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++ ...+.+. ..|+.. .+..++.. .|+||+++|.|+|+++|. ++++|||++|
T Consensus 365 i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~----p~~~vv~i~G 440 (563)
T PRK08527 365 LKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAV----PDKVVINFTG 440 (563)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhC----CCCcEEEEec
Confidence 4556677766554433 1112221 112222 23445543 489999999999999986 6788999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeC-Ccccccccc----------Ccc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS----------DQF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~----------~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. .+| |.+|++++||+++||.|| +|++....+ ... ...|+.++|++||+.+++|+ ++++
T Consensus 441 DG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~e 516 (563)
T PRK08527 441 DGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEE 516 (563)
T ss_pred Cchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999873 455 999999999966655555 566532110 011 23689999999999999997 7889
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+.+++++|++ .++|+|||+.+.+.
T Consensus 517 l~~al~~a~~----~~~p~lieV~v~~~ 540 (563)
T PRK08527 517 FDKALKEALE----SDKVALIDVKIDRF 540 (563)
T ss_pred HHHHHHHHHh----CCCCEEEEEEECCc
Confidence 9998888875 58899999999763
No 110
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.61 E-value=2e-15 Score=135.49 Aligned_cols=120 Identities=20% Similarity=0.182 Sum_probs=89.5
Q ss_pred ccccccCccHHHHHHHHHhh-hcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC----
Q 022717 54 VSSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 126 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k-~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~---- 126 (293)
..++||+++|.|+|+++|.- ...++++|||+.|||++. +| +.+ +.++.++++|+++||.||+ |++......
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 34899999999999988711 113688999999999985 44 444 7778889999777666665 664321110
Q ss_pred ------------ccCcccHHHHHhhcCceEEE---EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 127 ------------QFRSDGAVVKGRAYGVRSIR---VDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 127 ------------~~~~~d~~~~a~a~G~~~~~---VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.....|++++|++||+++++ |+ +++++..++++|++ +.++|+||++.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence 12346899999999999986 65 78999999988884 2588999999864
No 111
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.61 E-value=1e-14 Score=138.17 Aligned_cols=118 Identities=20% Similarity=0.151 Sum_probs=92.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEEEEEeCC-ccccccccCccCcc
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 131 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~-~~~~~~~~~~~~~~ 131 (293)
..|+||+++|.|+|+++|. ++++|||+.|||++.+ ...+|.+++++++ |+++||.||+ |+............
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm--~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALM--HMGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHH--HHHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3699999999999999986 6789999999999974 3456999999997 7776666665 65543222222357
Q ss_pred cHHHHHhhcCc-eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 132 GAVVKGRAYGV-RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 132 d~~~~a~a~G~-~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
|+.++|++||+ .+++|+ +++++.++++++.+ .++|+|||+++....
T Consensus 293 d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~g~ 339 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEVS--TLEELETALTAASS----ANGPRLIEVKVRPGS 339 (361)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCC
Confidence 89999999997 567775 89999999998864 588999999986543
No 112
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.61 E-value=3.8e-15 Score=148.87 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=109.0
Q ss_pred CCHHHHHHHhhcCCCCC---CCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKADY---GKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~~---~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++....++. ..+.+. ..++.. .+..++.. .|+||+++|.|+|+++|. ++++|++++|
T Consensus 363 ~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~----~~~~vv~~~G 438 (558)
T TIGR00118 363 IKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAK----PESTVICITG 438 (558)
T ss_pred cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhhC----CCCcEEEEEc
Confidence 56667788776655431 122221 112222 23445543 479999999999998885 6789999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccc----------c-CccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----------S-DQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~----------~-~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. .. +|.+|+++++|+++||.||+ |++.... . ......|+.++|++||+++++|+ ++++
T Consensus 439 DG~f~~~-~~-eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~ 514 (558)
T TIGR00118 439 DGSFQMN-LQ-ELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEE 514 (558)
T ss_pred chHHhcc-HH-HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHH
Confidence 9999873 44 59999999999777777776 4532200 0 11124689999999999999998 6889
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.++++++++ .++|+|||+.+.+
T Consensus 515 l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 515 LDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred HHHHHHHHHh----CCCCEEEEEEeCC
Confidence 9999998886 4899999999964
No 113
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.61 E-value=3.8e-15 Score=136.20 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=87.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccc-hHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE-GDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 126 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~-G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~------ 126 (293)
.+++|.++|.|+|+++|. +++.||++.|||++++ | ...+.+|+++++|+++||.||+ |++...+..
T Consensus 67 ~~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g--~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g 140 (277)
T PRK09628 67 HTTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIG--GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKG 140 (277)
T ss_pred eeccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhh--HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCC
Confidence 368999999999999886 7899999999999853 3 2337779999999776666664 676431110
Q ss_pred ---------c-cCcccHHHHHhhcCceEE---EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 127 ---------Q-FRSDGAVVKGRAYGVRSI---RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 127 ---------~-~~~~d~~~~a~a~G~~~~---~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
. ....|+.++|+++|+.++ +|. +++++.+++++|++ .+||+|||+.+.
T Consensus 141 ~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~~ 201 (277)
T PRK09628 141 MWTVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFSN 201 (277)
T ss_pred ceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcCC
Confidence 0 123477999999999975 565 89999999999986 689999999763
No 114
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.60 E-value=3.5e-15 Score=149.50 Aligned_cols=151 Identities=20% Similarity=0.263 Sum_probs=105.3
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++...... ...+.|. ..++.. .+..++.. .|+||+++|.|+|+++|. +++.||+++|
T Consensus 369 l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~----p~~~Vv~i~G 444 (566)
T PRK07282 369 VQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIAN----PDKEVILFVG 444 (566)
T ss_pred cCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheeheec----CCCcEEEEEc
Confidence 5677777776553332 1122221 112222 23445543 589999999999999886 7889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc---------c-Ccc-CcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI---------S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~---------~-~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
||+|++. ..+|.+|+++++|+++ |++|++|++.... . ..+ ...||+++|++||+.+.+|+ ++.+
T Consensus 445 DG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~e 520 (566)
T PRK07282 445 DGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPET 520 (566)
T ss_pred chhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHH
Confidence 9999863 3459999999999555 5555567764211 1 112 34689999999999999997 7888
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 155 IYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 155 v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+.++++ +++ .++|+|||+.+.+
T Consensus 521 l~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 521 LAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred HHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 888885 332 4899999999965
No 115
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.60 E-value=2.9e-15 Score=151.38 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=107.2
Q ss_pred CCHHHHHHHhhcCCCC---CCCCCCC-----ccccCC-CCCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeC
Q 022717 18 FSMQEFANQCFGNKAD---YGKGRQM-----PIHYGS-NKHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFG 86 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~---~~~G~~~-----~~h~~~-~~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~G 86 (293)
+.+..++.++...... ...+.|. ..|+.. .+..++.. .|+||+++|.|+|+++|. +++.|+|++|
T Consensus 398 l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~----p~~~Vv~i~G 473 (612)
T PRK07789 398 LAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGR----PDKEVWAIDG 473 (612)
T ss_pred cCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccC----CCCcEEEEEc
Confidence 6667777776553322 1122221 112222 22345533 479999999999999886 6889999999
Q ss_pred cccccchHHHHHHHHHhhcCCCEEE-EEEeCCccccccc---------c-Ccc-----CcccHHHHHhhcCceEEEEeCC
Q 022717 87 DGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPI---------S-DQF-----RSDGAVVKGRAYGVRSIRVDGN 150 (293)
Q Consensus 87 DGa~~~G~~~Eal~~A~~~~lpvi~-vi~NN~~~~~~~~---------~-~~~-----~~~d~~~~a~a~G~~~~~VdG~ 150 (293)
||+|++. ..+|.+|++++||+++ |++|++|++.... . ... ...||.++|++||+++++|+
T Consensus 474 DG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~-- 549 (612)
T PRK07789 474 DGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE-- 549 (612)
T ss_pred chhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--
Confidence 9999853 3569999999999555 5555568753211 0 001 12689999999999999997
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 151 DALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 151 D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
+++++..++++|++. .++|+|||+.+.+
T Consensus 550 ~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 550 REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 899999999999863 3789999999965
No 116
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.60 E-value=8.9e-15 Score=146.61 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=91.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-c--cccc------ccc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W--AIST------PIS 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~--~~~~------~~~ 125 (293)
.|+||+++|.|+|+++|. ++.||+++|||+|++. .. +|.+|+++++|+++||.||+ | .... ...
T Consensus 423 ~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~-~~-EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFS-GM-EVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhcC-----CCcEEEEecCcccccc-HH-HHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 589999999999999982 6789999999999863 34 49999999999888777776 3 1110 000
Q ss_pred -Cc-cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 126 -DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 126 -~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.. .+..||.++|++||+++.+|+ +++++..++++|++ .++|+|||+.+.+
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 135799999999999999997 79999999999875 5889999999854
No 117
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.59 E-value=2e-14 Score=132.89 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=97.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc-------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~------- 125 (293)
.+++|.++|+|+|+++|. +++.||++.|||++ ++|. ..|.+|+++++|+++||.||+ |+++..+.
T Consensus 69 ~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg~--~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g 142 (301)
T PRK05778 69 HTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIGG--GHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEG 142 (301)
T ss_pred chhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhccH--HHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCC
Confidence 478999999999999886 78999999999997 4552 349999999999766666664 66543211
Q ss_pred ---------CccCcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec--CCCCCCCCCCCC
Q 022717 126 ---------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR--VGHHTTSDDSTK 193 (293)
Q Consensus 126 ---------~~~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R--~~gHs~~Dd~~~ 193 (293)
......|+.++|+++|+.++ ++.-.++.++.+++++|++ .+||+|||+.+.= +.+. .+.
T Consensus 143 ~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~~-----~~~ 213 (301)
T PRK05778 143 SKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNGR-----NTS 213 (301)
T ss_pred cccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCCc-----CCc
Confidence 00124589999999999986 3344489999999999886 5899999987621 1221 223
Q ss_pred CCChHHHHHHH
Q 022717 194 YRPVDEIEWWR 204 (293)
Q Consensus 194 Yr~~~e~~~~~ 204 (293)
++++.++.+|-
T Consensus 214 ~~~~~~~~~~~ 224 (301)
T PRK05778 214 TKSPAYMREYY 224 (301)
T ss_pred ccCHHHHHHHH
Confidence 45566666664
No 118
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.59 E-value=5.5e-15 Score=147.10 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=92.1
Q ss_pred CCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCcccccccc
Q 022717 49 HNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPIS 125 (293)
Q Consensus 49 ~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~~ 125 (293)
..++. ..++||+++|.|+|+++|. + +++|+++|||+|++ ...+|.||+++++|++ ||++|++|++....+
T Consensus 394 ~~~~~~~~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~ 466 (535)
T TIGR03394 394 AGLMAPGYYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVFQ 466 (535)
T ss_pred CcEECcCccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehhc
Confidence 34443 2589999999999999985 3 45688999999985 3355999999999955 555555687653221
Q ss_pred C-----ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 126 D-----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 126 ~-----~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
. .....||.++|++||+++.+|+ +++++..++++|++. .++|+|||+.+.
T Consensus 467 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 521 (535)
T TIGR03394 467 PESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAMLP 521 (535)
T ss_pred cCCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEECC
Confidence 1 1235799999999999999998 789999999998852 355899999874
No 119
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.59 E-value=7.6e-15 Score=147.58 Aligned_cols=121 Identities=25% Similarity=0.338 Sum_probs=94.6
Q ss_pred CCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc-
Q 022717 49 HNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI- 124 (293)
Q Consensus 49 ~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~- 124 (293)
..++.. .|+||+++|.|+|+++|. +++.|||++|||+|++. . .+|.+|+++++|+++||.|| +|++....
T Consensus 410 ~~~~~~~~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~ 483 (586)
T PRK06276 410 RSFISSGGLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-S-QELATIAEYDIPVVICIFDNRTLGMVYQWQ 483 (586)
T ss_pred CeEEcCCCccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHH
Confidence 455543 479999999999999985 67899999999999864 3 45999999999966655555 57653211
Q ss_pred --------c-Ccc-CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 --------S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 --------~-~~~-~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
. ... ...|+.++|++||+.+.+|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 484 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 484 NLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred HHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 0 011 24689999999999999997 79999999998875 5889999999854
No 120
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.58 E-value=1.2e-14 Score=132.94 Aligned_cols=116 Identities=9% Similarity=0.056 Sum_probs=89.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~-------- 125 (293)
.+.+|.++|.|+|+++|. +++.||++.|||++..-.+ ..|.+|+++++|+++||.||+ |++..-+.
T Consensus 59 ~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG~-~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~ 133 (280)
T PRK11869 59 HTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEGG-NHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGF 133 (280)
T ss_pred CcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCcH-HHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCc
Confidence 467999999999998875 7899999999999862113 349999999999777766665 66532110
Q ss_pred --------CccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 --------DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 --------~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
......|+.++|+++|++++.. .-.++.++.+++++|++ .+||+|||+.+
T Consensus 134 ~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 134 KTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred ccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0112358999999999998873 34589999999999996 58999999976
No 121
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.56 E-value=6.5e-15 Score=147.48 Aligned_cols=113 Identities=22% Similarity=0.183 Sum_probs=88.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-Cccccccc---c-----
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---S----- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~---~----- 125 (293)
.+.||+++|.|+|+++| ++++|||++|||+|++. . .+|.+|+++++|+++||.|| +|++.... +
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~-~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-L-NGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-c-HHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999887 37789999999999864 2 45999999999965555555 57643211 0
Q ss_pred ----CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 126 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 126 ----~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
......||.++|++||+++++|+ +++++.+++++|++ .++|+|||+.+.
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~id 549 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKTN 549 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeCC
Confidence 01134689999999999999997 79999999999874 589999999874
No 122
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.56 E-value=4e-14 Score=129.48 Aligned_cols=117 Identities=20% Similarity=0.241 Sum_probs=91.3
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceEEEEeCcc-cccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC----
Q 022717 53 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 126 (293)
Q Consensus 53 ~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDG-a~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~---- 126 (293)
...+++|.++|+|+|+++|. ++..||++.||| ++.+|. ..|.+|+++|+|+++||.||+ |+++.-+..
T Consensus 56 ~~~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~ 129 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTP 129 (279)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence 34688999999999999885 788999999999 688764 349999999999777666665 665431110
Q ss_pred ---c-----c----CcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 ---Q-----F----RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 ---~-----~----~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
. . ...|+.++|+++|++.+. ....++.++.+++++|++ .+||+|||+..
T Consensus 130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0 013899999999998665 455799999999999986 68999999975
No 123
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.54 E-value=3e-14 Score=143.65 Aligned_cols=128 Identities=15% Similarity=0.172 Sum_probs=105.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccc--------cc
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP--------IS 125 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~--------~~ 125 (293)
..||-+.++++|+|+|.|+.+++.+..||+++||||+.-|+.+|+||.|+..+-++|+|++||+.+|+.+ ..
T Consensus 187 ~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG 266 (701)
T PLN02225 187 GTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASIS 266 (701)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999876 11
Q ss_pred Cc--------------------------cC--cccH---------------H-HHHhhcCceEEE-EeCCCHHHHHHHHH
Q 022717 126 DQ--------------------------FR--SDGA---------------V-VKGRAYGVRSIR-VDGNDALAIYSAVH 160 (293)
Q Consensus 126 ~~--------------------------~~--~~d~---------------~-~~a~a~G~~~~~-VdG~D~~~v~~a~~ 160 (293)
.. .+ ...+ . .+++.+|+.++- |||||++++..+++
T Consensus 267 ~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~ 346 (701)
T PLN02225 267 ALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLR 346 (701)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHH
Confidence 00 00 0000 1 356888998886 89999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCC
Q 022717 161 AAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
++.+. ..++|+||+++|-+..
T Consensus 347 ~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 347 EVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHcC--CCCCCEEEEEEecCCC
Confidence 88763 1249999999997654
No 124
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.52 E-value=9.8e-14 Score=127.62 Aligned_cols=115 Identities=17% Similarity=0.097 Sum_probs=87.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccc-ccchHHHHHHHHHhhcCCCEEEEEEeC-Ccccccccc-------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa-~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~------- 125 (293)
.+++|.++|+|+|+++|. +++.||++.|||+ ++.|.. .|.+|+++++|+++||.|| .|++.....
T Consensus 68 ~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg~~--eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIGGN--HFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCCHH--HHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 378999999999999885 7899999999996 776633 3999999999966655555 576643111
Q ss_pred Cc---------cCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 DQ---------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 ~~---------~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.. ....++.++|.++|...+. +.-.++.++.+++++|++ .++|+|||+.+
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 00 0125789999999998764 344579999999999986 58999999975
No 125
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.51 E-value=9.2e-14 Score=127.54 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=84.5
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccC-------
Q 022717 56 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 126 (293)
Q Consensus 56 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~------- 126 (293)
+.+|.++|+|+|+++|. +++.||++.|||++. +|. ..|.+|+++++|+++||.||+ |++......
T Consensus 53 t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg~--~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIGG--NHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhccH--HHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 56899999999998885 789999999999973 553 349999999999777666664 666432110
Q ss_pred -c--------c--CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 -Q--------F--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 -~--------~--~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
. . ..+++..+|.++|+.....- .++.++.+++++|++ .+||+||++.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0 02346677888887666522 489999999999986 68999999975
No 126
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.49 E-value=2.6e-13 Score=136.67 Aligned_cols=121 Identities=16% Similarity=0.074 Sum_probs=91.5
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC-CccccccccC--
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD-- 126 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN-~~~~~~~~~~-- 126 (293)
.++...++||+++|.|+|+++|. ++++||+++|||+|.+.... +|.+|.++++|+++||.|| .|++......
T Consensus 397 ~~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~~-eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~ 471 (595)
T TIGR03336 397 GTVDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGIP-GLINAVYNKANITVVILDNRITAMTGHQPNPG 471 (595)
T ss_pred cccceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCHH-HHHHHHHcCCCeEEEEEcCcceeccCCCCCCC
Confidence 34444689999999999998885 68899999999999752234 4899999999966655555 6776542211
Q ss_pred --------ccCcccHHHHHhhcCceEEEEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 127 --------QFRSDGAVVKGRAYGVRSIRVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 127 --------~~~~~d~~~~a~a~G~~~~~Vd-G~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.....|+.++++++|+++++|. -.|..++.++++++++ .++|++|++..
T Consensus 472 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 472 TGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 0124689999999999999985 3455677888888875 58899999965
No 127
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.44 E-value=4.1e-13 Score=129.21 Aligned_cols=125 Identities=22% Similarity=0.290 Sum_probs=94.6
Q ss_pred CCCcccc--cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC-CEEEEEEeCCccccccc
Q 022717 48 KHNYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPI 124 (293)
Q Consensus 48 ~~~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~ 124 (293)
...+++. +|++|+.+|+|+|+++|. +++++|.|+||||++. .-+++.+..+|+| |+|||++|+||.|..-.
T Consensus 401 ~~~~i~Q~lWGSIG~t~pAalGa~~A~----~drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~I 474 (557)
T COG3961 401 GATFISQPLWGSIGYTLPAALGAALAA----PDRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERAI 474 (557)
T ss_pred CCeEEcccchhhcccccHhhhhhhhcC----CCccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEehh
Confidence 3445553 899999999999999998 6799999999999984 4455999999999 69999999999887655
Q ss_pred cCcc------CcccHHHHHhhcCceEEEE--eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 SDQF------RSDGAVVKGRAYGVRSIRV--DGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 ~~~~------~~~d~~~~a~a~G~~~~~V--dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.... ..-|+.++.++||..-... .-...+.+..+++.+.+ ..+++.+|||++.+
T Consensus 475 Hg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~ 536 (557)
T COG3961 475 HGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPV 536 (557)
T ss_pred cCCCcCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCc
Confidence 4311 2357889999998743322 22244566666666664 35689999999865
No 128
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.38 E-value=5.6e-12 Score=120.32 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=94.6
Q ss_pred CCCCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEE-eCC-ccccc
Q 022717 47 NKHNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNG-WAIST 122 (293)
Q Consensus 47 ~~~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~-NN~-~~~~~ 122 (293)
.+.+.+. ..|+||-|++.|+++|++. |++.|+|+.||++|... .+| +.|+++|||||+.||. ||+ |+...
T Consensus 419 ~Pr~rLDaGtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS-aME-~ET~vR~~Lpvv~vV~NN~Giyg~d~ 492 (571)
T KOG1185|consen 419 GPRRRLDAGTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS-AME-LETFVRYKLPVVIVVGNNNGIYGLDD 492 (571)
T ss_pred CcccccCCccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc-hhh-HHHHHHhcCCeEEEEecCCcccccCc
Confidence 3444444 3689999998888888876 89999999999999753 344 9999999999776666 445 33322
Q ss_pred cc---------cCc------cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 123 PI---------SDQ------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 123 ~~---------~~~------~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.. ..+ ....++.+.+++||..++.|+ .++++..+++++++ .+++|++|.+...+
T Consensus 493 ~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 493 DGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP 561 (571)
T ss_pred ccHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence 11 111 234578899999999999998 89999999999886 46799999998754
No 129
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.36 E-value=2.7e-11 Score=111.71 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=97.7
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-cccccccc--
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-- 125 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~-- 125 (293)
+.....+.+|.+.++|.|++.|.+..+++..||++.|||++ ..| + ++|..|...+.++++||.||. |+.++-+.
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG-~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG-F-QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc-H-HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 33344688999999999999998876677899999999998 444 3 679999999999999888887 44331110
Q ss_pred --------------C-----ccCcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 126 --------------D-----QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 126 --------------~-----~~~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
. .....|+..++.++|++++ +++-.|+.++.+++++|.+ .+||.||++.+
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s 210 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ 210 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0 1124578999999999877 5677899999999999986 58999999976
No 130
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.35 E-value=2.4e-12 Score=142.29 Aligned_cols=115 Identities=18% Similarity=0.137 Sum_probs=89.4
Q ss_pred ccccccC--ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--CCCEEEEEEeCC-ccccccc----
Q 022717 54 VSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNG-WAISTPI---- 124 (293)
Q Consensus 54 ~~g~lG~--~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--~lpvi~vi~NN~-~~~~~~~---- 124 (293)
..|++|. ++|.|+|+++|. +++|+|++|||+|++. ..+|.+|+++ ++|+++||.||+ |++....
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~ 829 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAK 829 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCC
Confidence 3588998 599999999884 6789999999999853 3459999884 999766555554 6554211
Q ss_pred --cC----c----cCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 125 --SD----Q----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 125 --~~----~----~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.. . ....|+.++|++||+++.+|+ +++++..+++++.+ .++|+||||.|.|
T Consensus 830 ~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 830 RTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 00 0 124689999999999999998 79999998888874 5899999999954
No 131
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.19 E-value=6e-11 Score=111.85 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=110.8
Q ss_pred CCHHHHHHHhhcCCCC------CCCCCCC-cc----ccCCCCC-Ccccc--cccccCccHHHHHHHHHhhhcCCCceEEE
Q 022717 18 FSMQEFANQCFGNKAD------YGKGRQM-PI----HYGSNKH-NYFTV--SSTIATQLPHAVGAAYALKMDRKDACAVT 83 (293)
Q Consensus 18 ~~~~~~~~~~~g~~~~------~~~G~~~-~~----h~~~~~~-~~~~~--~g~lG~~lp~A~G~A~a~k~~~~~~~vv~ 83 (293)
+.|+.++..+-....+ .+.|-|. .| |+..++. .++.+ -|+||+++|+|+|+..|. ++.+||-
T Consensus 472 ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~----P~~iViD 547 (675)
T KOG4166|consen 472 IKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVAN----PDAIVID 547 (675)
T ss_pred cChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccC----cccEEEe
Confidence 5677777776433322 1234332 11 4555443 34443 479999999999998876 8999999
Q ss_pred EeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-ccccccc----------CccCcccHHHHHhhcCceEEEEeCCCH
Q 022717 84 YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS----------DQFRSDGAVVKGRAYGVRSIRVDGNDA 152 (293)
Q Consensus 84 ~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~----------~~~~~~d~~~~a~a~G~~~~~VdG~D~ 152 (293)
+-||++|.+. +.| |.++...++||-++|.||.- ++.+.-+ ....++++.++|+++|++..+|. .-
T Consensus 548 IDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGikalRV~--K~ 623 (675)
T KOG4166|consen 548 IDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIKALRVT--KK 623 (675)
T ss_pred ccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCchheee--hH
Confidence 9999999752 444 99999999998888888863 3322111 11235899999999999999997 56
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 153 LAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 153 ~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+++.+.+++.+. .+||+|+|+.+...
T Consensus 624 edL~~k~kefls----TkGPvLleV~v~~k 649 (675)
T KOG4166|consen 624 EDLREKIKEFLS----TKGPVLLEVIVPHK 649 (675)
T ss_pred HHHHHHHHHHhC----CCCCeEEEEEccCc
Confidence 788888888875 79999999998543
No 132
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.13 E-value=3.2e-10 Score=105.55 Aligned_cols=122 Identities=25% Similarity=0.370 Sum_probs=81.1
Q ss_pred CCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCC----CEEEEE
Q 022717 38 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA----PVIFIC 113 (293)
Q Consensus 38 ~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~l----pvi~vi 113 (293)
.|.++|......+.+...|-||++++.|.|+++ ++|+.+|+|++|||++.+|....+...-..++- -|+-|+
T Consensus 122 gGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPIL 197 (379)
T PF09364_consen 122 GGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPIL 197 (379)
T ss_dssp TSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEE
T ss_pred CCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceE
Confidence 457888887666777778899999999999875 459999999999999999865544332233332 277788
Q ss_pred EeCCccccccccC-ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHH
Q 022717 114 RNNGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 163 (293)
Q Consensus 114 ~NN~~~~~~~~~~-~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~ 163 (293)
.=|+|.|+.++-. ..+...+.+++++||+..+.|+|.|+.++...+..++
T Consensus 198 hLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~al 248 (379)
T PF09364_consen 198 HLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAAL 248 (379)
T ss_dssp EE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHH
T ss_pred EecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH
Confidence 8899999877632 2345678999999999999999999998877665443
No 133
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.11 E-value=2.6e-09 Score=105.89 Aligned_cols=186 Identities=19% Similarity=0.199 Sum_probs=125.1
Q ss_pred CCCCCccccCCCC-CCccc-ccccccCccHHHHHHHHHhhhc-------CCCceEEEEeCcccccchHHHHHHHHHhhcC
Q 022717 36 KGRQMPIHYGSNK-HNYFT-VSSTIATQLPHAVGAAYALKMD-------RKDACAVTYFGDGGTSEGDFHAALNFSAVTE 106 (293)
Q Consensus 36 ~G~~~~~h~~~~~-~~~~~-~~g~lG~~lp~A~G~A~a~k~~-------~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~ 106 (293)
.|.|.++++.... ..++. .+.+||-|...|+=.|+-.|+- .++++|+||+|||++.++...+++.+|++.+
T Consensus 170 ~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~ 249 (887)
T COG2609 170 DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREK 249 (887)
T ss_pred cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhc
Confidence 3677777665433 34555 3689999999999988888863 3689999999999999999999999999999
Q ss_pred C-CEEEEEEeCCccccccccCccC-cccHHHHHhhcCceEEE--------------------------------------
Q 022717 107 A-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIR-------------------------------------- 146 (293)
Q Consensus 107 l-pvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a~a~G~~~~~-------------------------------------- 146 (293)
| +++|||+.|.-..+.|...... ...+..++++.||.++.
T Consensus 250 LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakd 329 (887)
T COG2609 250 LDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKD 329 (887)
T ss_pred CCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccc
Confidence 9 7999999998777666543210 11233344444444422
Q ss_pred -------------------------------EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC
Q 022717 147 -------------------------------VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 195 (293)
Q Consensus 147 -------------------------------VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr 195 (293)
--|||+..|++|+++|.+. .++|++|-+.|.+.+|-..+- +.-.
T Consensus 330 GayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~PtvilA~TIKGyglg~~~--eg~n 404 (887)
T COG2609 330 GAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTVILAKTIKGYGLGEAA--EGKN 404 (887)
T ss_pred cHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceEEEEeeeccccCchhh--cccc
Confidence 2389999999999999874 358999999998776643221 1112
Q ss_pred ChHHHHHHHhCCCcHHHHHHHHHHCCCCCHHHHHH
Q 022717 196 PVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 230 (293)
Q Consensus 196 ~~~e~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~ 230 (293)
....+++. ..|-|+.||.++-= -++++|+++
T Consensus 405 ~aHq~kkm--~~~~l~~~Rdr~~i--pvsd~e~e~ 435 (887)
T COG2609 405 IAHQVKKM--TPDQLKEFRDRFGI--PVSDAELEE 435 (887)
T ss_pred hhhhhhcC--CHHHHHHHHhhcCC--CCchhhhhc
Confidence 22222211 23445666665421 245666555
No 134
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.03 E-value=8.4e-10 Score=106.30 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=88.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccccccCc----cC
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQ----FR 129 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~~~~~~----~~ 129 (293)
+|++|+.+|.++|+++|. +++++++|+|||+++. .++| +.++.+|+|| +||+++|++|.|..-.... ..
T Consensus 414 wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~ql-TvQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~I~ 487 (561)
T KOG1184|consen 414 WGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQL-TVQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYNDIQ 487 (561)
T ss_pred Eeeccccchhhhhhhhcc----CCceEEEEecCcccee-eHHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCccccc
Confidence 799999999999999998 5799999999999985 3444 9999999995 9999999999887544331 12
Q ss_pred cccHHHHHhhcCceE---EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 130 SDGAVVKGRAYGVRS---IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 130 ~~d~~~~a~a~G~~~---~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.-|+.++.++||..- ....-....++..+.+.+.. .+.+++.+|||+..
T Consensus 488 ~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~--~~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 488 NWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATF--EKNDKIRLIEVILP 539 (561)
T ss_pred cchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhh--cccCceEEEEEecC
Confidence 357888999998533 22221234566677777663 24678999999873
No 135
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=99.02 E-value=1.2e-09 Score=104.19 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=90.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCcccccccc--------
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPIS-------- 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~~-------- 125 (293)
.+.||+-+.-++|+. ...+++-|++++||||++ +.+.+|.++..++.-++ ++++|-+|+.....+
T Consensus 443 fSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf 516 (617)
T COG3962 443 FSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASF 516 (617)
T ss_pred ccccccccccccccc----cCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchh
Confidence 578999888888875 456899999999999998 57778999999999855 456666776432211
Q ss_pred ----------CccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 126 ----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 126 ----------~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
......||++.|++||+..++|. +++++.+++++|.+ ..++++|+++|...
T Consensus 517 ~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P~ 577 (617)
T COG3962 517 NNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDPK 577 (617)
T ss_pred hhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCCc
Confidence 12345689999999999999997 88888887777664 78999999998643
No 136
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=99.01 E-value=8.4e-10 Score=101.61 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=107.6
Q ss_pred ccCCCCCCccc--ccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-c
Q 022717 43 HYGSNKHNYFT--VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-A 119 (293)
Q Consensus 43 h~~~~~~~~~~--~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~ 119 (293)
|.. ++.+++. ..|++|+.+|.|+|+-.| .+++.++++.||=.|+ ...|+|...+.+|+|-|+|+.||.| +
T Consensus 405 hv~-~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq--fmieelavgaq~k~pyihv~vnnaylg 477 (592)
T COG3960 405 HVF-KPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ--FLIEELAVGAQFKIPYIHVLVNNAYLG 477 (592)
T ss_pred hhc-CCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHH--HHHHHHhhhhcccCceEEEEecchHHH
Confidence 443 3355553 368999999999998655 4889999999999998 5678899999999999999999987 1
Q ss_pred --------ccccccCcc------------CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 120 --------ISTPISDQF------------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 120 --------~~~~~~~~~------------~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
++.....++ -..|-.+.++++|++.++|- +|.++..++.+|..-+.+..-|++||++.
T Consensus 478 lirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~il 555 (592)
T COG3960 478 LIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEVIL 555 (592)
T ss_pred HHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeehHH
Confidence 111111110 12355678999999999996 89999999999999889999999999999
Q ss_pred ecCCCCCCC
Q 022717 180 YRVGHHTTS 188 (293)
Q Consensus 180 ~R~~gHs~~ 188 (293)
.|...-+++
T Consensus 556 ervtnismg 564 (592)
T COG3960 556 ERVTNISMG 564 (592)
T ss_pred HHhhccccc
Confidence 998766654
No 137
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.72 E-value=4.3e-07 Score=83.94 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=101.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccc-ccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccc-------ccc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS 125 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa-~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~-------~~~ 125 (293)
.+.-|-..+.|.|+.+|. ++..|+++.|||. +..|.-+ |.-+.+.+.+|++||-||. |+.+. |..
T Consensus 69 hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~~~--l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G 142 (294)
T COG1013 69 HSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGGNH--LIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKG 142 (294)
T ss_pred eeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhhHH--HHHHHHcCCCeEEEEECCeecccCCCccCCCCCCC
Confidence 467888999999998887 5668999999995 5777544 8888999999888888886 54432 111
Q ss_pred C---------cc-CcccHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC
Q 022717 126 D---------QF-RSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 194 (293)
Q Consensus 126 ~---------~~-~~~d~~~~a~a~G~~~~-~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Y 194 (293)
. .. ...|+..++-++|.+.+ ++---++..+.+.+++|++ .+||.||++.+.= ++.-+. ..+
T Consensus 143 ~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~----~~Gps~I~v~sPC---~t~~~~-~~~ 214 (294)
T COG1013 143 AKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE----HKGPSFIDVLSPC---PTGNGR-NTM 214 (294)
T ss_pred ceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh----ccCCeEEEEecCC---CCCCCc-ccc
Confidence 1 11 22378899999998766 5655679999999999997 5799999997621 111121 223
Q ss_pred CChHHHHHHH-hCCCcHHHHHHHHH
Q 022717 195 RPVDEIEWWR-TTQDPVTRFRKWIE 218 (293)
Q Consensus 195 r~~~e~~~~~-~~~dPi~~~~~~L~ 218 (293)
...++...+- ...+|+-++.....
T Consensus 215 ~~~~~~~~ave~g~~pl~~~~~~~~ 239 (294)
T COG1013 215 KTIEEAKLAVETGYWPLYRYEPGKA 239 (294)
T ss_pred hHHHHHHHHHhcCCceeeeccCcch
Confidence 3334433332 25677776665433
No 138
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=4.7e-07 Score=90.36 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=86.7
Q ss_pred CCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHH-hhcCC----CEEEE
Q 022717 38 RQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS-AVTEA----PVIFI 112 (293)
Q Consensus 38 ~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A-~~~~l----pvi~v 112 (293)
.|.++|......+.+...|.||+++..|.|+++= .|+.++.|++|||+..+|...-+ ..+ ..++- .++-|
T Consensus 135 gGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~d----~Pdli~~~vvGDGeaetgplats-Whs~kf~np~~dGavLPI 209 (793)
T COG3957 135 GGIGSHVAPETPGSIHEGGELGYALSHAYGAAFD----NPDLIVACVVGDGEAETGPLATS-WHSNKFLNPARDGAVLPI 209 (793)
T ss_pred CCcccccCCCCCCccCcCcchhHHHHHHHHhhcC----CCCcEEEEEecccccccCccccc-cccccccCccccCceeeE
Confidence 4577888876677777889999999999998764 58999999999997766643211 112 12221 37888
Q ss_pred EEeCCccccccccCc-cCcccHHHHHhhcCceEEEEeCCCHHHHHHHH
Q 022717 113 CRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAV 159 (293)
Q Consensus 113 i~NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~ 159 (293)
+.-|+|.|+-++... .+..++.+++++||..-+.|+|.|+.+....+
T Consensus 210 L~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 210 LHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred EEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 889999998776432 23456889999999999999999998844433
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.27 E-value=3.2e-06 Score=83.93 Aligned_cols=114 Identities=22% Similarity=0.198 Sum_probs=86.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCCc-cccccccC-----
Q 022717 54 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISD----- 126 (293)
Q Consensus 54 ~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~~----- 126 (293)
.+-.||.++++|-|++++. .+++|+++|||+|. .|. .+|..|...+.+++++|.+|.+ ++++.+..
T Consensus 426 ~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~ 498 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGV 498 (640)
T ss_pred hhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCccc
Confidence 3457888888888888775 37899999999995 443 3488888899998888888877 44432211
Q ss_pred -----ccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 127 -----QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 127 -----~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
.....++.+..++.|+..+. ||-.|..++.+++++|++ ..+|.+|.++
T Consensus 499 ~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViiak 552 (640)
T COG4231 499 AAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIAK 552 (640)
T ss_pred ccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEEc
Confidence 12234678899999998876 677899999999999887 5889988654
No 140
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.00 E-value=0.00029 Score=66.71 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=69.4
Q ss_pred ceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-ccccc-------ccc---------CccCcccHHHHHhhc
Q 022717 79 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS---------DQFRSDGAVVKGRAY 140 (293)
Q Consensus 79 ~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~-------~~~---------~~~~~~d~~~~a~a~ 140 (293)
..|+++.|||.. ..|.- .|.-|...+.+|++||-||. |+.++ |.. ......|+..++.++
T Consensus 152 ~~v~v~gGDG~~ydIG~~--~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYG--GLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccchh--hHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 589999999965 66643 37677778888877777775 65431 111 112235888999999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 141 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 141 G~~~~-~Vd-G~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
|.+++ ++- +.++.++.+++++|.+ .+||.||++.+
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~s 266 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYS 266 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEc
Confidence 98766 454 3589999999999986 59999999977
No 141
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.99 E-value=2.6e-05 Score=76.63 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=84.7
Q ss_pred CCcccccc--cccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCC-EEEEEEeCCccccc--c
Q 022717 49 HNYFTVSS--TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAIST--P 123 (293)
Q Consensus 49 ~~~~~~~g--~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp-vi~vi~NN~~~~~~--~ 123 (293)
.+.+++-| -+.+.++-|+|++.|. .+.++.++||=|+-.- .. +|-+......| +|+|++|||-+|-. |
T Consensus 413 ~~v~sNRGA~GIDG~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD-~N-gLl~~k~~~~~ltIvv~NNnGGgIF~~Lp 485 (566)
T COG1165 413 YRVYSNRGASGIDGTVSTALGIARAT-----QKPTVALIGDLSFLHD-LN-GLLLLKKVPQPLTIVVVNNNGGGIFSLLP 485 (566)
T ss_pred ceeecCCCccccchhHHHHhhhhhhc-----CCceEEEEechhhhhc-cc-hHhhcCCCCCCeEEEEEeCCCceeeeecc
Confidence 34444422 4555688899999875 4569999999998421 11 24455666678 77888888887742 2
Q ss_pred cc-------Ccc---CcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 124 IS-------DQF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 124 ~~-------~~~---~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
+. ..+ ..-||...|+.||+.+.+++ ...++..++..+.. ..|-.+||++|.|-
T Consensus 486 ~~~~~~~fe~~F~tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r~ 548 (566)
T COG1165 486 QAQSEPVFERLFGTPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDRS 548 (566)
T ss_pred CCCCcchHHHhcCCCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecChh
Confidence 11 111 13589999999999999987 67788888877764 46789999999763
No 142
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.35 E-value=0.0011 Score=71.26 Aligned_cols=117 Identities=14% Similarity=0.094 Sum_probs=75.8
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCCc-ccccccc--CccCc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS--DQFRS 130 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~--~~~~~ 130 (293)
...||+..+.++|.+.+. .++.+|+++|||.|. .|.. +|--|...+.|++++|.+|.. +|++-+. ...+.
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v 540 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISV 540 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCH
Confidence 357888888888888763 346799999999994 4443 577788888998887777776 5554322 12222
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHH-----HH--------HHHHHHHHHhhccCCcEEEEE
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALA-----IY--------SAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~-----v~--------~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+.+....++.|+..+.|-..|+.. +. +.+....+..|+.+|+++|..
T Consensus 541 ~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 541 PQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIY 600 (1159)
T ss_pred HHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 334447789999888764345444 22 223333333335678888754
No 143
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.24 E-value=0.0071 Score=49.73 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=66.2
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEe-CcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~-GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
..+|.|.+++. . ..++++. |.|..+ ..+.+..|...++|+++|+...+..... .......+....++.+
T Consensus 48 ~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHh
Confidence 45566666553 3 3333434 888764 4466778888899999999776643211 1111123445566666
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
..-...+. ++.+....+.+|+..+....||++|++
T Consensus 118 ~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 55555554 677788888888887777789999976
No 144
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.23 E-value=0.0036 Score=68.07 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred ceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCC-cccc-------cccc---------CccCcccHHHHHhhc
Q 022717 79 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIS-------TPIS---------DQFRSDGAVVKGRAY 140 (293)
Q Consensus 79 ~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~-------~~~~---------~~~~~~d~~~~a~a~ 140 (293)
..++++.|||.. ..|.- .|.-+...+.+|.+||-||. |+.+ ||.. ......|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG~~--~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYG--GLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCcc--chHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 469999999965 55533 37778888999777777775 5443 2211 112345888899999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 141 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 141 G~~~~-~Vd-G~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
|.+++ ++- |.++.++.+++++|.+ .+||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~----~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEA----YDGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHc----CCCCEEEEEECC
Confidence 98766 565 5689999999999986 699999999873
No 145
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.22 E-value=0.0064 Score=50.41 Aligned_cols=106 Identities=21% Similarity=0.108 Sum_probs=69.1
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEe-CcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~-GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a 139 (293)
...+|.|.+++. .+.-+++.+ |=|..+ ...++..|...++|+|+|.-+...........+ ..|..+..+.
T Consensus 46 A~~~A~g~~~~~----~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q--~~d~~~~~~~ 116 (155)
T cd07035 46 AVGMADGYARAT----GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQ--EIDQVALFRP 116 (155)
T ss_pred HHHHHHHHHHHH----CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCccc--ccCHHHHHHH
Confidence 345566666653 222233333 555553 456788888899999998876554322111111 2355566666
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEE
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~ 177 (293)
+--...+++ +++++...+.+|++.+... ++|+.|++
T Consensus 117 ~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 117 ITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 655567776 8889999999999998877 78999987
No 146
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.21 E-value=0.002 Score=69.38 Aligned_cols=118 Identities=13% Similarity=0.046 Sum_probs=80.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCCc-cccccc--cCccCc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPI--SDQFRS 130 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~--~~~~~~ 130 (293)
...||+....++|.+.+. .++.+|+++|||.|. .|.. +|.-|...+.+++++|.+|.. +|++-+ ....+.
T Consensus 480 ~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~~--al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~~ 553 (1165)
T PRK09193 480 FTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGLL--AIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLSV 553 (1165)
T ss_pred eeccCCcchhhceecccc----CCCcEEEEeccccchhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcch
Confidence 357888888889987753 346799999999994 4433 477788888998877776665 565432 222355
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHHHHHH--------------HHHHHHHhhccCCcEEEEEE
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALAIYSA--------------VHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~v~~a--------------~~~a~~~~r~~~gP~lIe~~ 178 (293)
.++....++.|+..+.|-..|+...... ++...+..|+.+|+++|...
T Consensus 554 ~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~~ 615 (1165)
T PRK09193 554 PQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIYD 615 (1165)
T ss_pred hhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 6888999999998887654466655433 33333344457888887543
No 147
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=97.14 E-value=0.0097 Score=50.34 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+.+. ++-.++++..|=|.++ ..-++..|...++|+|+|.-+........ ......|..++++.+--
T Consensus 52 ~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (164)
T cd07039 52 FAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccCC--CCCcccCHHHHHHHhhc
Confidence 3455666553 3345566666888775 23457788888999999987655432111 11112366777888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
...+++ +++++.+++++|+..++...||+.|++-
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 777887 8888999999999888878899999984
No 148
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.91 E-value=0.011 Score=49.41 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=66.0
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
...+|.|.+++. .. ++++..|-|..+ ....|-.|...+.|+|+|+-+................+.....+.
T Consensus 53 A~~~A~g~~r~~----~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~- 123 (160)
T cd07034 53 AAEAAIGASAAG----AR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH- 123 (160)
T ss_pred HHHHHHHHHhhC----Cc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-
Confidence 344455555432 22 666777888875 345577787888999999876544321110000111122223333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+...++. +++++...+++|+..++.+++|++|..
T Consensus 124 ~~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 124 PWPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 35666665 899999999999999999889999865
No 149
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.88 E-value=0.0065 Score=65.51 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=75.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCCc-ccccccc--CccCc
Q 022717 55 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS--DQFRS 130 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~--~~~~~ 130 (293)
...||+.....+|.+... .++.+|.++|||.|. .|.. +|..|...+.+++++|.+|.. +|++-+. ...+.
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~~--alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGLL--AIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchhcCHH--HHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 357888888888887653 346799999999995 4433 477788888998887777765 5554322 22233
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHHHH--------------HHHHHHHHHhhccCCcEEEEE
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALAIY--------------SAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~v~--------------~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+.++...++.|+..+.|-..|+..+. +.++...+..|+.+|+++|..
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 44455779999987775333454433 333333334445778887754
No 150
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.81 E-value=0.014 Score=49.58 Aligned_cols=110 Identities=21% Similarity=0.094 Sum_probs=73.5
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
..-+|.|.+++. +.-.++++..|=|.++ ..-+|..|...+.|+|+|+-.-..........+ ...|...+++.+
T Consensus 51 A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~ 123 (172)
T PF02776_consen 51 AAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPV 123 (172)
T ss_dssp HHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGG
T ss_pred hHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhccc
Confidence 345566766654 2233444444666654 233466788889999999988776544321111 123667788888
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHh-hccCCcEEEEEEe
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALT 179 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~-r~~~gP~lIe~~t 179 (293)
.-...++. +++++..++++|+..+ ....+|+.|++..
T Consensus 124 ~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~ 161 (172)
T PF02776_consen 124 TKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIPQ 161 (172)
T ss_dssp SSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEEH
T ss_pred cchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcCh
Confidence 88888886 7778888888888888 6679999999864
No 151
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.79 E-value=0.023 Score=47.92 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=70.5
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccc-c--cCcc--C-cccHH
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-I--SDQF--R-SDGAV 134 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~-~--~~~~--~-~~d~~ 134 (293)
..-+|-|.+.+. .-.++++..|=|.++ ..-+|..|...+.|+|+|+-+........ . .... . ..|..
T Consensus 47 A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~ 119 (162)
T cd07038 47 AGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFL 119 (162)
T ss_pred HHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHH
Confidence 344566666554 133444444777665 33457788888999999987654321111 0 0000 0 11456
Q ss_pred HHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 135 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 135 ~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+++.+.-...+|. +++++.+++++|+..+..+++|++|++
T Consensus 120 ~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 120 KMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 77777777777786 788999999999999988889999987
No 152
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.75 E-value=0.035 Score=46.74 Aligned_cols=108 Identities=16% Similarity=0.049 Sum_probs=69.0
Q ss_pred cCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHh-hcCCCEEEEEEeCCccccccccCccCcccHH-HH
Q 022717 59 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGWAISTPISDQFRSDGAV-VK 136 (293)
Q Consensus 59 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~-~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~-~~ 136 (293)
+.+..+|.|..++ .++.++|+.+=|-. ...-+|..|. ..+.|+|+|+-.-+.--.. .+.+.....+. ..
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~-~~~q~~~g~~~~~~ 114 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEK-IPAQIPMGRATPKL 114 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCC-CccccchhhhhHHH
Confidence 4445556666543 34566777777732 3445677788 8899999998655441110 00111111121 22
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
....+++...++ +++++ .++.+|++.+.++++|+.|-+.
T Consensus 115 l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 115 LDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 355677888886 68899 9999999999999999998764
No 153
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=96.11 E-value=0.044 Score=46.39 Aligned_cols=107 Identities=13% Similarity=0.049 Sum_probs=64.6
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.+.+. ++-.++++..|=|.++ ..-++..|...+.|+|+|+-+-........ .+...|...+++.+-
T Consensus 48 ~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~--~~q~~d~~~l~~~vt 119 (162)
T cd07037 48 AFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTG--ANQTIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCC--CCcccchhhhcccee
Confidence 34566666543 3344555555777775 234577788889999999876543321111 111234455566555
Q ss_pred ceEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 022717 142 VRSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 178 (293)
Q Consensus 142 ~~~~~VdG~D~~~------v~~a~~~a~~~~r~~-~gP~lIe~~ 178 (293)
-...+|. ++++ +.+.+++|+..++.+ .||++|++-
T Consensus 120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 5556664 4444 677777787777766 489999874
No 154
>PRK08611 pyruvate oxidase; Provisional
Probab=95.54 E-value=0.15 Score=51.63 Aligned_cols=108 Identities=13% Similarity=0.013 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-........ .+-..|...+++.+-
T Consensus 56 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d~~~l~~~it 127 (576)
T PRK08611 56 ALAAAAYAKLT---GKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGTD--FFQEVNLEKMFEDVA 127 (576)
T ss_pred HHHHHHHHHHh---CCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCCC--CccccCHHHHhhccc
Confidence 34566665443 3445566666888886 234577788889999999876544322111 111236667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
-...+|+ +++++..++.+|+..+....||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 128 VYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 6666776 78899999999998888888999999865
No 155
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.45 E-value=0.14 Score=51.62 Aligned_cols=112 Identities=19% Similarity=0.154 Sum_probs=78.6
Q ss_pred cCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHh
Q 022717 59 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 138 (293)
Q Consensus 59 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~ 138 (293)
+...-+|-|.|.+ .++-.++++..|=|+++ ..-.|..|..-+.|+|+|.-.-...... .+.+-..|...+++
T Consensus 49 q~Aa~mAdgyar~---TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g--~~afQe~D~~~l~~ 120 (550)
T COG0028 49 QGAAFAADGYARA---TGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIG--TDAFQEVDQVGLFR 120 (550)
T ss_pred HHHHHHHHHHHHH---cCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccC--cchhhhcchhhHhh
Confidence 3334456666544 45667899999999996 3345888888999999886522211111 11122237777777
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
.+--..++|. +++++.+.+++|++.+.+++ ||++|++-.+
T Consensus 121 p~tk~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 121 PITKYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred hhheeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 7777778887 89999999999999999876 9999998653
No 156
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=95.44 E-value=0.15 Score=51.23 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=73.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.|.+. +.-.++++..|=|.++ . --++..|...+.|+|+|.-.............+...|...+++.+-
T Consensus 53 ~~mAdgyar~t---g~~gv~~~t~GPG~~N--~-~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vt 126 (554)
T TIGR03254 53 GYAAAAAGFLT---QKPGVCLTVSAPGFLN--G-LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFA 126 (554)
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHh--H-HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhh
Confidence 34456666553 3345666667998886 2 2357788888999999986544321100111122235667788877
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++.+.+.+|+..+.++ .||+.|++-..
T Consensus 127 k~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 127 KAAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 7788887 7889999999999888775 48899988753
No 157
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=95.42 E-value=0.1 Score=49.59 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=76.9
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHH-H-HHh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-V-KGR 138 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~-~-~a~ 138 (293)
.+.+|+|+++| +.++++.+-++.+. -.+|.|.+|+-..+|+++++.+-. +-++- ..+....|.. . +..
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g-~t~~eq~D~~~~~~~~ 129 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLG-NIQPSQGDYFQAVKGG 129 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCC-CCcchhHHHHHHHhcC
Confidence 46678888876 45688888777776 578999999999999888777644 21111 1111112221 1 111
Q ss_pred hcC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 139 AYG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 139 a~G-~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
+.| .+.+..+-.|+.+++.....|++.+.+..-|++|-..++ -+|+.
T Consensus 130 ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (352)
T PRK07119 130 GHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMM 177 (352)
T ss_pred CCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCce
Confidence 111 234445666999999999999999888889999988884 36764
No 158
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=95.41 E-value=0.14 Score=49.19 Aligned_cols=116 Identities=19% Similarity=0.208 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHH-HHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-VKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~-~~a~a 139 (293)
.+.+|+|+++| +.++++.+-=+++. -.+|.+.+++-..+|+|+++.+... .++.........|+. .+..+
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~g-p~tg~p~~~~q~D~~~~~~~~ 130 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGG-PSTGQPTKPAQGDMMQARWGT 130 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCC-CCCCCCCCcCcHHHHHHhccc
Confidence 46778888877 34566555444444 4578899999999998877776542 111111111122332 23333
Q ss_pred cC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 140 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 140 ~G-~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
+| .+.+.+...|+.+++.....|++.+.+..-|++|-...+ -+|+.
T Consensus 131 hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (376)
T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMR 177 (376)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCc
Confidence 33 444556667999999999999999888899999998883 67764
No 159
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=95.28 E-value=0.2 Score=50.80 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... ...+...|...+++.+--
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~l~~~~tk 128 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIG--QGGFQEAEQMPMFEDMTK 128 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCC--CCCCcccchhhhhhhhee
Confidence 4455655543 2345566666888886 2345777888899999998322211000 001111255566776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...++. +++++...+.+|+..++...||+.|++-.
T Consensus 129 ~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP~ 163 (588)
T PRK07525 129 YQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIPR 163 (588)
T ss_pred EEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 666665 78899999999999888889999999975
No 160
>PRK07524 hypothetical protein; Provisional
Probab=95.10 E-value=0.27 Score=49.16 Aligned_cols=112 Identities=17% Similarity=0.027 Sum_probs=74.5
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCc-cCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~-~~~~d~~~~a~a 139 (293)
..-+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|.-............. ....|...+++.
T Consensus 51 A~~mAdgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~ 124 (535)
T PRK07524 51 AGFMADGYARVS---GKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAG 124 (535)
T ss_pred HHHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhh
Confidence 344556665443 3345666777888886 234577888899999998865433211100000 111366777888
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
+--...+|. +++++.+.+.+|+..++.+ .||+.|++-.+
T Consensus 125 ~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 125 VAAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred hceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 877777776 7999999999999988876 69999988743
No 161
>PRK07064 hypothetical protein; Provisional
Probab=95.08 E-value=0.27 Score=49.21 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCc-cCcccHHHHHhhcC
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYG 141 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~-~~~~d~~~~a~a~G 141 (293)
-+|.|.|.+. ++-.++++..|=|.++ ..-++..|...+.|||+|+-+-........... ....|..++++.+-
T Consensus 55 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 128 (544)
T PRK07064 55 NMADAHARVS---GGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVS 128 (544)
T ss_pred HHHHHHHHhc---CCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhc
Confidence 3566666553 3345666677888886 234577788889999999864221111000000 01136667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
-...+|+ +++++..++.+|+..+..+ .||+.|++-.
T Consensus 129 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 129 KAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 6677776 7888889999999887776 7999999875
No 162
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.05 E-value=0.22 Score=50.38 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-...... ...+-..|...+++.+--
T Consensus 56 ~mAdgYar~t---g~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk 127 (574)
T PRK07979 56 HMADGLARAT---GEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHHHh---CCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccc
Confidence 3566666543 3455677777998886 2235777888899999998654332211 111222466677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++...+++|+..++.+ .||++|++-..
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 128 HSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 777786 8999999999999888877 49999998754
No 163
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=95.03 E-value=0.25 Score=49.60 Aligned_cols=108 Identities=16% Similarity=0.009 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-.-+.|+|+|+-.-....... ......|...+++.+--
T Consensus 53 ~mAdgyar~t---gkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vtk 124 (549)
T PRK06457 53 LAASVEAKIT---GKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIGH--DYFQEVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHHHh---CCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhcccee
Confidence 3456665543 3445566667888886 33457788888999999986533221111 11112255566666555
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
...+|. +++++..++++|+..+....||+.|++-..
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 125 FNQILI--NPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 556665 788899999999988877889999999754
No 164
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=95.02 E-value=0.26 Score=49.76 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+... +.-.++++..|=|.++ .--++..|...+.|+|+|+-.-...........+...|...+++.+--
T Consensus 61 ~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk 134 (569)
T PRK09259 61 NAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCK 134 (569)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhhee
Confidence 3455555543 3344566666888886 223577888899999999865432210000111122356667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
...+|+ +++++...+.+|+..+..+ .||+.|++-.
T Consensus 135 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (569)
T PRK09259 135 AAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLPA 170 (569)
T ss_pred eeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeCH
Confidence 777786 7899999999999888775 5899999874
No 165
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.96 E-value=0.25 Score=50.00 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.+... +.-.++++..|=|.++ ..-+|..|...+.|+|+|.-.-..... ....+...|...+++.+--
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~--~~~~~Q~~d~~~l~~~vtk 124 (579)
T TIGR03457 53 HMADGFARVT---GRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTI--GLGGFQEADQLPMFQEFTK 124 (579)
T ss_pred HHHHHHHHHh---CCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccC--CCCCCcccchhhhhhccee
Confidence 3455555443 3445566667888886 234577888889999998632211110 0111111255666776666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...+|. +++++...+++|+..+..++||++|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 159 (579)
T TIGR03457 125 YQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIPR 159 (579)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 666675 78899999999998888888999999865
No 166
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=94.96 E-value=0.38 Score=40.14 Aligned_cols=100 Identities=21% Similarity=0.190 Sum_probs=60.1
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHH-HHhhcCCCEEEEEEeCCccc--cccccCccCcccHHHHH
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKG 137 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~-~A~~~~lpvi~vi~NN~~~~--~~~~~~~~~~~d~~~~a 137 (293)
.+++|.|+|+. + .++++++. ..|.+ ..++.|. .++.+++|+++++...+++. ..++.. ...+++ ..
T Consensus 51 ~vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~--~~~~~a-~~ 119 (156)
T cd07033 51 MVGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQ--GIEDIA-LL 119 (156)
T ss_pred HHHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccc--hHHHHH-Hh
Confidence 34556666643 2 34444444 45543 3444455 88999999999998776654 332221 112222 22
Q ss_pred hhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 138 RAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 138 ~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+ .+|.+.| .-.|+.++...++.|++ .++|++|-.
T Consensus 120 ~--~iPg~~v~~Ps~~~~~~~ll~~a~~----~~~P~~irl 154 (156)
T cd07033 120 R--AIPNMTVLRPADANETAAALEAALE----YDGPVYIRL 154 (156)
T ss_pred c--CCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEe
Confidence 2 4455542 45689999999999986 467998754
No 167
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=94.93 E-value=0.18 Score=48.23 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=73.0
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHH--HHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcc
Q 022717 56 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH--AALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSD 131 (293)
Q Consensus 56 g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~--Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~ 131 (293)
..=|.++++|.|+.+|. +++.++++=-.++.. .+. -+|.....|++|+++||-.-+.--. .|....+ ..
T Consensus 33 ~~E~~av~iaaG~~lat-----G~~~~v~mQnSGlGn-~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~-G~ 105 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLGN-AVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQ-GR 105 (361)
T ss_pred CCchHHHHHHHHHHHhc-----CCccEEEEecCchhh-hhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHH-hH
Confidence 34577788888888873 344555543333321 111 1222256789999999988775321 1211111 12
Q ss_pred cHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 132 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 132 d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
-..++.+++|++...++ .+.++...++.+|++++.+.++|+.|-+.
T Consensus 106 ~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 106 ITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 23467899999999995 25667888888888888888999887664
No 168
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=94.88 E-value=0.28 Score=47.39 Aligned_cols=113 Identities=21% Similarity=0.262 Sum_probs=75.7
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
.+.+|+|+++| +.++++.+-=++++ ..+|.|.+|+-..+|+|+++.|-... ++.+......|+. .++--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~-~~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSL-AQRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHH-HHhhc
Confidence 36778888877 34566666555554 56899999999999988777644332 2222211122332 22333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
||-.+ -..|+.+.+.....|++.+.+..-|++|-...++.. |..
T Consensus 130 g~i~~--~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~ 173 (390)
T PRK08366 130 GWMQF--YAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY 173 (390)
T ss_pred CEEEE--eCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence 66333 346899999999999999888999999999888764 544
No 169
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.81 E-value=0.26 Score=49.84 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|-|.|... +.-.++++..|=|.++ ..-++..|-.-+.|||+|.-.-....... ..+-..|...+++.+--.
T Consensus 57 mAdgyar~t---g~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARAT---GKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhcccee
Confidence 566666543 3445667777888886 23457788888999999986544322111 111123566677777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
..+|+ +++++...+++|+..++.+ .||+.|++-..
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 77776 7999999999999888877 49999999764
No 170
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.76 E-value=0.29 Score=49.39 Aligned_cols=108 Identities=19% Similarity=0.086 Sum_probs=71.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-....... ..+-..|...+++.+-
T Consensus 56 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~t 127 (572)
T PRK06456 56 AHAADGYARAS---GVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhccc
Confidence 34566666543 3334555567888886 23457788888999999975433322111 1111235566677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t 179 (293)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 128 KYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 6677775 88899999999998888764 999999865
No 171
>PRK08266 hypothetical protein; Provisional
Probab=94.73 E-value=0.35 Score=48.41 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCcc-CcccHHHHHhhcC
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYG 141 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~-~~~d~~~~a~a~G 141 (293)
-+|.|.+... +.-.++++..|=|.++ ..-++..|...+.|+|+|+-.-..........+. ...|...+++.+-
T Consensus 57 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 57 YMAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhc
Confidence 3566666554 2334556666888886 2345777888899999998542211100000011 1136667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+++|+..++.+ .||+.|++-..
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 6777786 7888999999999888774 68999999764
No 172
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.69 E-value=0.28 Score=49.62 Aligned_cols=109 Identities=20% Similarity=0.175 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|-..+.|+|+|+-.-...... .......|...+++.+-
T Consensus 65 ~~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~it 136 (570)
T PRK06725 65 IHAAEGYARAS---GKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhccc
Confidence 33566666543 3345666677888886 2345777888899999987543322111 11112236667788777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|. +++++.+.+++|+..++.+ .||+.|++-..
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 174 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPKD 174 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence 6777786 7999999999999988877 49999998653
No 173
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=94.69 E-value=0.35 Score=48.98 Aligned_cols=109 Identities=20% Similarity=0.139 Sum_probs=72.0
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.+++. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... .......|...+++.+-
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~t 122 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLIG--NDAFQEIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccccC--CCCCccccHhhHHhhhc
Confidence 44566666543 3345666667888886 2345777888899999987532221111 11111235667777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..+..+ .||+.|++-.+
T Consensus 123 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 123 KHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 6777786 7888999999999888776 48999998753
No 174
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=94.68 E-value=0.31 Score=49.53 Aligned_cols=108 Identities=14% Similarity=-0.002 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC-
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG- 141 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G- 141 (293)
-+|-|.|.+. +.-.++++..|=|+++ ..-++..|-..+.|||+|.-.-...... ...+...|...+++.+-
T Consensus 56 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~vt~ 127 (597)
T PRK08273 56 FMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAALG--GHYQQEVDLQSLFKDVAG 127 (597)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhcC--CCCCCccCHHHHHHHHHH
Confidence 3466666553 3345566666888886 2235777888899999998532221111 11111235556666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..+..++||+.|++-..
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 128 AFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4566676 788889999999988888889999998754
No 175
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.67 E-value=0.35 Score=49.32 Aligned_cols=108 Identities=19% Similarity=0.149 Sum_probs=71.7
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|... ++-.++++..|=|+++ ..-+|-.|..-+.|||+|.-+-..... ....+-..|...+++.+-
T Consensus 73 a~aA~gyar~t---gk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vt 144 (616)
T PRK07418 73 AHAADGYARAT---GKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhcc
Confidence 34555655443 3445666667998886 224577888899999998864332111 011111235666677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t 179 (293)
-...+|+ +++++..++.+|+..+..+. ||++|++-.
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 5666776 88999999999999888776 999998864
No 176
>PRK07586 hypothetical protein; Validated
Probab=94.63 E-value=0.29 Score=48.70 Aligned_cols=109 Identities=18% Similarity=0.082 Sum_probs=71.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-....... ...-..|...+++.+-
T Consensus 52 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vt 123 (514)
T PRK07586 52 TGAADGYARMA---GKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRKY--DAPLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHHHH---CCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccCC--Ccccccchhhhhcccc
Confidence 34566666543 3345566677888775 22346678888999999986533221111 1111235666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|. +++++.+.+++|+..++.+ .||++|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 124 GWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 5666676 7889999999999988887 69999998764
No 177
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=94.61 E-value=0.33 Score=49.04 Aligned_cols=108 Identities=18% Similarity=0.092 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|+++ ..-+|..|-..++|||+|.-.-...... .......|...+++.+--
T Consensus 63 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk 134 (578)
T PRK06112 63 AMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTK 134 (578)
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccc
Confidence 3455666543 3445566666888775 2345777888899999998542221111 111112355667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|+ +++++...+.+|+..++.+ .||+.|++-..
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 135 WVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 677776 7889999999999888876 48999998754
No 178
>PLN02470 acetolactate synthase
Probab=94.58 E-value=0.32 Score=49.31 Aligned_cols=109 Identities=20% Similarity=0.177 Sum_probs=73.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... ...+-..|...+++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~t 135 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcC--CCcCcccchhhhhhhhe
Confidence 34566666554 3445667777888886 2345777888899999997543322111 11111235556677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
-...+|+ +++++.+++.+|+..++.++ ||+.|++-..
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 136 KHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecCc
Confidence 6677775 89999999999999888774 9999999753
No 179
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.54 E-value=0.4 Score=48.65 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+.. ++-.++++..|=|.++ ..-++..|...+.|+|+|.-.-....... ..+-..|...+++.+--
T Consensus 56 ~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk 128 (591)
T PRK11269 56 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhccee
Confidence 44556655431 3344556666888886 22357778888999999976544322111 11112356667777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++..++++|+..++.+ .||+.|++-..
T Consensus 129 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 129 WAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 666775 8899999999999988876 48999999754
No 180
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.43 E-value=0.37 Score=48.96 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|-|.|.+.. +.-.++++..|=|.++ ..-+|..|...+.|+|+|.-.-....... ..+...|...+++.+--
T Consensus 55 ~mAdgyaR~t~--g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vtk 127 (588)
T TIGR01504 55 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVSK 127 (588)
T ss_pred HHHHHHHHhcC--CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhce
Confidence 34555554320 2334445556888876 22357778888999999986544332111 11222366777887776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
...+|. +++++.+.+++|+..++.+. ||++|++-..
T Consensus 128 ~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 128 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 777776 78999999999999888764 8999998764
No 181
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=94.41 E-value=0.39 Score=48.93 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=72.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-...... ...+...|...+++.+-
T Consensus 82 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 82 GHAAEGYAQAT---GRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcce
Confidence 34566666543 3445566667888886 2345777888899999998643322111 11111236666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..++.+ .||++|++-..
T Consensus 154 k~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 154 KHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 6667776 8999999999999888876 59999998753
No 182
>PRK12474 hypothetical protein; Provisional
Probab=94.39 E-value=0.41 Score=47.74 Aligned_cols=108 Identities=18% Similarity=0.016 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|+-......... ...-..|...+++.+--
T Consensus 57 ~mAdgYaR~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vtk 128 (518)
T PRK12474 57 GAADGYGRIA---GKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVSR 128 (518)
T ss_pred HHHHHHHHHh---CCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhcccc
Confidence 3455666543 3445666677888875 22346678888899999986533221111 11111366677776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
...+|+ +++++.+++++|+..+..+. ||++|++-..
T Consensus 129 ~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 129 WVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 556665 88999999999998877764 8999998754
No 183
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=94.38 E-value=0.32 Score=48.79 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=71.0
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|..-+.|+|+|.-.-....... ......|...+++.+-
T Consensus 51 ~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (548)
T PRK08978 51 AMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCce
Confidence 34566666553 3445666667888886 33457778888999999976443221111 1111124455566665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
-...+|+ +++++...+++|+..++.+ .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 5667776 7899999999999888876 4999999865
No 184
>PRK08322 acetolactate synthase; Reviewed
Probab=94.34 E-value=0.43 Score=47.80 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=71.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-+-...... .......|...+++.+-
T Consensus 51 ~~~A~gyar~t---g~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 122 (547)
T PRK08322 51 AFMAATYGRLT---GKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLT 122 (547)
T ss_pred HHHHHHHHHhh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhhe
Confidence 34566665543 3344556666888886 2345777888899999998543322111 11111235666777665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|. +++++...+.+|+..+..+ .||+.|++-..
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 123 KWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 5566775 8899999999999888876 48999998753
No 185
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.32 E-value=0.38 Score=48.88 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=72.9
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|-|.|+.. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-....... ..+...|...+++.+-
T Consensus 62 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARST---GKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhhe
Confidence 34456665543 3345666677888886 22457778888999999986544322111 1111235566677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..++.+ .||+.|++-..
T Consensus 134 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D 171 (595)
T PRK09107 134 KHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPKD 171 (595)
T ss_pred EEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCCC
Confidence 5666776 8999999999999998887 49999988653
No 186
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=94.26 E-value=0.41 Score=48.34 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=72.0
Q ss_pred cCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHh
Q 022717 59 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 138 (293)
Q Consensus 59 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~ 138 (293)
....-+|.|.+.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-....... ...-..|...+++
T Consensus 63 ~~A~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~ 134 (571)
T PRK07710 63 QGAIHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEADIMGITM 134 (571)
T ss_pred HHHHHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccchhhhhh
Confidence 33344566666543 3344566666888876 23457778888999999876544321111 1111235556666
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
.+--...+|. +++++...+++|+..++.+ .||+.|++-..
T Consensus 135 ~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 135 PVTKHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred cccceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 6655566665 7889999999999888876 49999999753
No 187
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=94.25 E-value=0.43 Score=48.02 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-...... ....-..|...+++.+-.
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 124 (558)
T TIGR00118 53 HAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPITK 124 (558)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCccc
Confidence 3466666543 3345667777888886 2345777888899999997643221111 111112355667777777
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|+ +++++...+.+|+..+... .||+.|++-..
T Consensus 125 ~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 125 HSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 777786 7889999999999888776 48999998653
No 188
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=94.14 E-value=0.46 Score=47.80 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. ++-.++++..|=|.++ ..-++..|-..+.|||+|.-.-...... .......|...+++.+--
T Consensus 60 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~tk 131 (557)
T PRK08199 60 MMAEAYGKLT---GRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMAK 131 (557)
T ss_pred HHHHHHHHhc---CCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhhc
Confidence 4456665543 3345566666888886 2345777888899999997543321111 111112355566666654
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
...+|. +++++.+.+.+|+..+..+ .||+.|++-.
T Consensus 132 ~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~ 167 (557)
T PRK08199 132 WVAEID--DAARIPELVSRAFHVATSGRPGPVVLALPE 167 (557)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 566664 8899999999999888877 5899998864
No 189
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.09 E-value=0.49 Score=47.68 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-....... ..+...|...+++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 64 GFIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccc
Confidence 34466666554 2334455556888876 22357778889999999975433221111 1111124455566655
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++...+.+|+..++.+ .||+.|++-..
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 5566675 8899999999999888877 59999999643
No 190
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.07 E-value=0.48 Score=47.91 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=71.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-...... ...+...|...+++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 126 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVV 126 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhce
Confidence 44566666553 3344556666888886 2234777888899999987543322111 11112235666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
-...+|+ +++++...+++|+..++.+. ||+.|++-..
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (572)
T PRK08979 127 KHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPKD 164 (572)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence 6677776 89999999999999888764 9999998654
No 191
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.03 E-value=0.6 Score=47.35 Aligned_cols=108 Identities=20% Similarity=0.143 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-...... .......|...+++.+--
T Consensus 73 ~~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~itk 144 (587)
T PRK06965 73 HAADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIG--QDAFQECDTVGITRPIVK 144 (587)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCcccccHHHHhcCCcc
Confidence 3566666554 3344566666888876 2235777888899999987432211100 111112355666777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++...+.+|+..++.+ .||+.|++-..
T Consensus 145 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 145 HNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 677776 7889999999999988877 59999998764
No 192
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=93.96 E-value=0.43 Score=47.88 Aligned_cols=109 Identities=18% Similarity=0.106 Sum_probs=67.4
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cCccC-cccHHHHHhh
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR-SDGAVVKGRA 139 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~~~~-~~d~~~~a~a 139 (293)
+|.|.|.+. +.-.++++..|=|.++. .-++..|...+.|||+|.-+......... ..+.. ..+....++.
T Consensus 53 ~Adgyar~t---g~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARYR---GTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHhh---CCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 455665543 34556677779988862 23577888889999999865432211100 01110 1123455665
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
.--...+|. +++.+.+.+++|+..+....||++|++-..
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 544455565 677777778888877777789999999764
No 193
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.95 E-value=0.54 Score=47.46 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... .......|...+++.+--
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 127 (574)
T PRK06882 56 HMADGYARST---GKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVVK 127 (574)
T ss_pred HHHHHHHHhh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccc
Confidence 4455665543 3345566666888876 2235777888899999997644332111 111112355667777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++...+.+|+..+..+ .||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 128 HSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 677776 8888999999999877775 59999999764
No 194
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=93.93 E-value=0.32 Score=43.54 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=66.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc-ccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~-~~~~~~~~~~d~~~~a~a~ 140 (293)
+.+++|++++- .++++.+-=.+++ ...|.|.+++-.++|+++++.|-.-.-. .++.. ...|+ -.++.+
T Consensus 49 ~~~~~GAs~aG------~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~-~~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAAG------ARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDL-MAARDS 117 (230)
T ss_dssp HHHHHHHHHTT--------EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHH-HHTTTS
T ss_pred HHHHHHHHhcC------CceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHH-HHHHhc
Confidence 56677777752 3454444333333 4567889999999998887776543222 11111 11222 224466
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
||..+.. .|+.+.+.....|++.+.+..-|+++-...++. .|+.
T Consensus 118 ~~~vl~p--~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 118 GWIVLAP--SSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 7776655 489999999999999999999999999988764 3554
No 195
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=93.63 E-value=0.47 Score=45.61 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC-ccccccccCccCcccH-HHHHh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGA-VVKGR 138 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~~~~~~~~~~~~~~d~-~~~a~ 138 (293)
.+.+|+|+++| +.++++.+-=+++. -.+|.+.+|+...+|+++++.+-. -+...++.. ...|+ ..+..
T Consensus 59 A~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~--~q~D~~~~~~~ 128 (375)
T PRK09627 59 GISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRV--AQGDVNQAKNP 128 (375)
T ss_pred HHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCcc--chHHHHHHhcC
Confidence 35667888776 34566665445554 457899999999999887666542 111112211 11233 22233
Q ss_pred hcC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 139 AYG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 139 a~G-~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
++| .+.+.+.-.|+.+++....+|++.+.+..-|++|-... +. +|+.
T Consensus 129 ~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~ 176 (375)
T PRK09627 129 THGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMY 176 (375)
T ss_pred CCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCe
Confidence 332 23345677799999999999999988899999998887 34 6764
No 196
>PRK05858 hypothetical protein; Provisional
Probab=93.54 E-value=0.74 Score=46.16 Aligned_cols=109 Identities=17% Similarity=-0.013 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-+-..........+ ..|...+++.+-
T Consensus 55 ~~~AdGyar~t---g~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~t 126 (542)
T PRK05858 55 AFAAEAWAKLT---RVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EIDHVPFVAPVT 126 (542)
T ss_pred HHHHHHHHHhc---CCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--ccchhhhhhhhh
Confidence 34566666553 3334555555777775 234577888889999988754332211100111 135566677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++.+.+.+.+|+..+..+ .||+.|++-..
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 6777776 6888889999998877765 58999998653
No 197
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=93.49 E-value=0.61 Score=47.10 Aligned_cols=109 Identities=18% Similarity=0.149 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.+... +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... ...+-..|...+++.+-
T Consensus 61 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 132 (566)
T PRK07282 61 LHEAEGYAKST---GKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPIT 132 (566)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCC
Confidence 34556665543 3445667777988886 2235777888899999998653322111 11111124555667666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
-...+|+ +++++..++.+|+..++.+ .||+.|++-..
T Consensus 133 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 170 (566)
T PRK07282 133 KYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPKD 170 (566)
T ss_pred ceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCChh
Confidence 6667776 7888999999999988876 49999998664
No 198
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=93.39 E-value=0.84 Score=46.19 Aligned_cols=107 Identities=14% Similarity=0.020 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|-|.+.. .++-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-...... .......|....++.+--.
T Consensus 53 ~Adgyar~---tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~id~~~~~~~vtk~ 124 (575)
T TIGR02720 53 AAAADAKL---TGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMN--MDTFQEMNENPIYADVAVY 124 (575)
T ss_pred HHHHHHHh---hCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCcceechhhhhhhcceE
Confidence 45555543 33455667777888886 2345777888899999998654332111 1111112444556666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
..+|. +++.+...+.+|+..+....||+.|++-.+
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 125 NRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 55665 677888888888888777899999999754
No 199
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.31 E-value=0.74 Score=46.39 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=69.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.+... +.-.++++..|=|.++ ..-+|..|-..+.|||+|.-.-...... .......|...+++.+-
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 129 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIG--NDAFQEADITGITMPIT 129 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhccCcc
Confidence 44566665543 3345666667888886 2345777888899999987432221110 01111235556666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
-...+|. +++++...+.+|+..++.+ .||+.|++-.
T Consensus 130 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 130 KHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 5566675 7889999999999888776 5899999964
No 200
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=93.23 E-value=0.48 Score=47.91 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=70.7
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHH-HHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-VKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~-~~a~a 139 (293)
.+.+|+|+++| +.++++.+-=.+++ ..+|.|.+|+-..+|+|+++-+-.- .++.........|+. .+.-+
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~g-pstg~~t~~eq~D~~~~~~~~ 319 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGG-PSTGLPTKTEQSDLLFALYGG 319 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCC-CCCCCCCCccHHHHHHHhcCC
Confidence 35667777766 34455555444554 5789999999999997766665432 222111111112322 12221
Q ss_pred cC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 022717 140 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 181 (293)
Q Consensus 140 ~G-~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R 181 (293)
.| .+.+.+...|+.+++....+|++.+.+..-|++|-...+.
T Consensus 320 hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 320 HGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 11 2334456669999999999999999999999999998874
No 201
>PRK08617 acetolactate synthase; Reviewed
Probab=93.23 E-value=0.73 Score=46.29 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=68.9
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|.|.+.+ .+.-.++++..|=|.++ ..-++..|...+.|+|+|.-......... ...-..|...+++.+--.
T Consensus 57 ~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~~~l~~~~tk~ 128 (552)
T PRK08617 57 MAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDNVALFRPITKY 128 (552)
T ss_pred HHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccchhhhhhhhcce
Confidence 45555443 23345566666888886 22357778888999999875332211111 111123555667777666
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
..+|+ +++++..++.+|+..+..+ .||+.|++-..
T Consensus 129 ~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 129 SAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 77776 8889999999999888776 48999998753
No 202
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=93.18 E-value=1.1 Score=43.61 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
.+.+++|++++ +.++++.+-=.+++ ..+|.|.+|+-..+|+|+++.+-+.... ........|+.. ++.-
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~--~~i~~d~~D~~~-~r~~ 136 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAP--LNVNGDHSDMYL-SRDS 136 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCC--cCCCchHHHHHH-HhcC
Confidence 35667787776 33455555434443 5679999999999998888887765321 211111223322 3444
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEEEeecCCCCC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEALTYRVGHHT 186 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~--~gP~lIe~~t~R~~gHs 186 (293)
||.. +...|+.+++.....|++.+.+. .-|+++-...++. +|+
T Consensus 137 g~iv--l~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 137 GWIS--LCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred CeEE--EeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 5444 45669999999999999988766 7899998887643 554
No 203
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=93.05 E-value=0.86 Score=46.23 Aligned_cols=108 Identities=22% Similarity=0.177 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|... +.-.++++..|=|.++ ..-+|..|...+.|+|+|.-.-...... ...+...|...+++.+--
T Consensus 65 ~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk 136 (585)
T CHL00099 65 HAADGYARST---GKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHHhc---CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCcee
Confidence 3455555443 3345566666888886 2235777888899999987543211110 011112245556666655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. +++++.+.+++|+..++.+ .||+.|++-..
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 667776 7899999999999888765 48999998653
No 204
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=93.04 E-value=0.63 Score=47.04 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc----c--CccCc-ccHHH
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI----S--DQFRS-DGAVV 135 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~----~--~~~~~-~d~~~ 135 (293)
-+|-|.|... ++-.++++..|=|.++ ..-+|..|...+.|||+|.-.-........ . ..+.. .|...
T Consensus 64 ~~Adgyar~t---gk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~ 137 (569)
T PRK08327 64 SMAHGYALVT---GKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGG 137 (569)
T ss_pred HHHHHHHHhh---CCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHH
Confidence 3455555543 3345566667888886 234577888889999999875433221100 0 00111 25566
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
+++.+--...+|+ +++++..++.+|+..++.+ .||++|++-.
T Consensus 138 ~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~ 180 (569)
T PRK08327 138 LVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLPR 180 (569)
T ss_pred HHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECcH
Confidence 6676655566776 7889999999999988875 7999999874
No 205
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.94 E-value=0.91 Score=45.77 Aligned_cols=109 Identities=20% Similarity=0.127 Sum_probs=69.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|+.. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-..... ....+...|...+++.+-
T Consensus 54 ~~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 54 VHAADGYARAS---GKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLI--GTDAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHHhhh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhhhhhccc
Confidence 34455555443 3445666677888886 223577788889999998753221110 001111224455666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
-...+|+ +++++..++++|+..++.+. ||+.|++-..
T Consensus 126 k~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 126 KHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 5556665 89999999999999888764 8999998753
No 206
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.87 E-value=1 Score=45.12 Aligned_cols=107 Identities=19% Similarity=0.051 Sum_probs=68.5
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|.|.|... +.-.++++..|=|.++ ..-++..|...+.|+|+|+-.-...... .......|...+++.+--.
T Consensus 51 ~Adgyar~t---g~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGRIT---GKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHHHh---CCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 455555433 3345666677888886 2235777888899999998643322111 1111123555666666445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
..+++ +++++...+.+|+..+... .||+.|++-..
T Consensus 123 ~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 123 SAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 55665 8889999999999887776 48999998754
No 207
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=92.66 E-value=0.95 Score=43.79 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~ 140 (293)
.+.+++|++++ +.++++.+-=.++. ..+|.|.+|+-..+|+++++-|-..+. +..-.....|+. -.+..
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~~-~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDTI-SQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHHH-hcccc
Confidence 36678888776 33455554333333 467999999999999888875544332 322111112322 23445
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccC--CcEEEEEEeecCCCCCC
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIEALTYRVGHHTT 187 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~--gP~lIe~~t~R~~gHs~ 187 (293)
||-.+. ..|+.+++.....|++.+.+.+ -|+++-...+|. +|+.
T Consensus 131 g~~~~~--a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 131 GWMQFY--AENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred CeEEEe--CCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 665544 3689999999999998877433 799999999876 5653
No 208
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=92.62 E-value=1.1 Score=45.13 Aligned_cols=107 Identities=14% Similarity=-0.042 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-+-........ .+...|...+++.+-.
T Consensus 55 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~--~~Q~~d~~~l~~~itk 126 (574)
T PRK09124 55 FAAGAEAQLT---GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGSG--YFQETHPQELFRECSH 126 (574)
T ss_pred HHHHHHHHhh---CCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC--CccccChhhhccccee
Confidence 3466665543 2223333345777775 123467788889999999865333211111 1111244555665544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...+|+ +++++...+.+|+..+....||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP~ 161 (574)
T PRK09124 127 YCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLPG 161 (574)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 555565 78888888888888877778999999854
No 209
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=92.36 E-value=1.1 Score=45.78 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~~~~a~a 139 (293)
.++.|+|+|++ +.++|+.+ =+.|.+-.+.+-.+.++..++||++++...++.. ..++.. ...|++ --
T Consensus 364 ~vg~AaGlA~~------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~--~~~dia---~l 431 (617)
T TIGR00204 364 AVTFAAGMAIE------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQ--GAFDIS---YL 431 (617)
T ss_pred HHHHHHHHHHC------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCcccc--cchHHH---HH
Confidence 34556676642 23444444 5667654444444678889999999998777642 122222 223433 22
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
-.+|.++| .-.|+.++...++.|++. .++|++|...
T Consensus 432 r~iPgl~V~~Psd~~e~~~~l~~a~~~---~~~Pv~ir~~ 468 (617)
T TIGR00204 432 RCIPNMVIMAPSDENELRQMLYTGYHY---DDGPIAVRYP 468 (617)
T ss_pred hcCCCcEEEeeCCHHHHHHHHHHHHhC---CCCCEEEEEc
Confidence 34455543 345888999988888852 3489988543
No 210
>PRK06154 hypothetical protein; Provisional
Probab=92.31 E-value=1.4 Score=44.55 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=61.7
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHH
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 158 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a 158 (293)
.++++..|=|.++ ..-++..|...+.|+|+|.-........ .....+....++.+--...+|+ +++++.+.
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTD----VAPNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccccc----CCCCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 3444456888886 2245777888899999998543322110 1111233455666655566676 88899999
Q ss_pred HHHHHHHhhcc-CCcEEEEEEee
Q 022717 159 VHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 159 ~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
+.+|+..++.+ .||++|++-..
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHHhcCCCceEEEecchH
Confidence 99999888875 69999998754
No 211
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=92.12 E-value=1.3 Score=44.29 Aligned_cols=109 Identities=17% Similarity=0.049 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-.+........+ ...|...+++.+--
T Consensus 62 ~~Adgyar~t---g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk 134 (530)
T PRK07092 62 GMADGYAQAT---GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVK 134 (530)
T ss_pred HHHHHHHHHh---CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhccccc
Confidence 3566666543 3445555566888774 234577788889999988764333221100000 11244555666544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~-gP~lIe~~t~ 180 (293)
...+| .+++++.+.+.+|+..++... ||+.|++-..
T Consensus 135 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d 171 (530)
T PRK07092 135 WSIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD 171 (530)
T ss_pred ceeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence 45556 478899999999998887774 7999998753
No 212
>PLN02573 pyruvate decarboxylase
Probab=92.10 E-value=1.3 Score=44.79 Aligned_cols=109 Identities=17% Similarity=0.077 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cCccCcc---cHHHH
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFRSD---GAVVK 136 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~~~~~~---d~~~~ 136 (293)
-+|-|.|.+. + -.++++..|=|+++ ..-++..|...+.|||+|.-.-........ ....... +....
T Consensus 68 ~mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (578)
T PLN02573 68 YAADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 140 (578)
T ss_pred HHHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHH
Confidence 3455665543 3 45677777888886 223477788889999999865433211100 0000001 12244
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
++.+--...+|. +++++.+.+++|+..++...||+.|++-..
T Consensus 141 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 141 FQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred hhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 555555566675 788888888888888888889999998654
No 213
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=92.10 E-value=1.5 Score=37.22 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=55.8
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--------CCCEEEEEEeCCccccccccCccCccc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSDG 132 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--------~lpvi~vi~NN~~~~~~~~~~~~~~~d 132 (293)
.++.|.|+|+. +.++++.+.=+.|..-.+.+-.+-++.+ ++||++++..-+++...++ .+..+
T Consensus 56 ~vg~AaGlA~~------G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t---hs~~~ 126 (167)
T cd07036 56 IVGLAVGAAMN------GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ---HSQSL 126 (167)
T ss_pred HHHHHHHHHHc------CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh---hhhhH
Confidence 35556666653 3355554333444332233323444444 5899999976665533333 12223
Q ss_pred HHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 133 AVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 133 ~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
+ .+.+++ |.+.| .-.|+.+....++.+++ .++|+++-
T Consensus 127 ~-a~lr~i--Pg~~V~~Psd~~e~~~~l~~~~~----~~~P~~~~ 164 (167)
T cd07036 127 E-AWFAHI--PGLKVVAPSTPYDAKGLLKAAIR----DDDPVIFL 164 (167)
T ss_pred H-HHHhcC--CCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 2 344444 44442 34589999999888886 47898873
No 214
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=91.79 E-value=0.73 Score=44.88 Aligned_cols=108 Identities=18% Similarity=0.079 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|-..+.|+|+|.-.-....... ......|..++++.+--
T Consensus 52 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (432)
T TIGR00173 52 FFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHHhcc---CCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhccc
Confidence 3456665543 3445666667888876 23457778888899999975433211110 00111245556666655
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEEee
Q 022717 143 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEALTY 180 (293)
Q Consensus 143 ~~~~VdG~D~~~------v~~a~~~a~~~~r~~-~gP~lIe~~t~ 180 (293)
...+|. ++.+ +...+.+|+..+..+ .||+.|++-.+
T Consensus 124 ~~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (432)
T TIGR00173 124 WSLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR 166 (432)
T ss_pred eeeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence 555564 3333 666777777766664 48999999753
No 215
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=91.77 E-value=1.5 Score=44.50 Aligned_cols=107 Identities=18% Similarity=0.023 Sum_probs=65.8
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCce
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 143 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~ 143 (293)
+|-|.|.+. +.-.++++..|=|.++ ..-++-.|-..+.|+|+|.-.-........ .+...|...+++.+--.
T Consensus 56 mAdgyar~t---gk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~--~~Qe~d~~~l~~~~tk~ 127 (578)
T PRK06546 56 AAAAEAQLT---GKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGSG--FFQETHPDRLFVECSGY 127 (578)
T ss_pred HHHhHHHhh---CCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCC--CccccChhhhcccceee
Confidence 455555443 2334445556788776 123477788889999999753322111100 01112334555555445
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
..+|. +++++...+.+|+..+....||+.|++-..
T Consensus 128 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 128 CEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred EeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 56665 788888899999988887889999998653
No 216
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=91.26 E-value=3.6 Score=34.96 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccc---hHHHHHHH-HHhhcCCCEEEEEEeCCccccccccCccCcccHHHH
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSE---GDFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVK 136 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~---G~~~Eal~-~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~ 136 (293)
.++.|+|+|++-+ ...+++..++ .|.. -..++.+. ..+..++|+. |+..-+++.........+..++ ..
T Consensus 60 ~vg~a~GlA~~G~---~~~~~~~~f~--~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d~-~~ 132 (178)
T PF02779_consen 60 MVGMAAGLALAGG---LRPPVESTFA--DFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIEDE-AI 132 (178)
T ss_dssp HHHHHHHHHHHSS---SEEEEEEEEG--GGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSHH-HH
T ss_pred ccceeeeeeeccc---ccceeEeecc--ccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccccccccc-cc
Confidence 4566777776631 1233444444 3432 23445454 6788899988 6666665443222222223333 33
Q ss_pred Hhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 137 GRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 137 a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
.+++ |+.++. -.|+.++...++.+++. +.++|++|-..
T Consensus 133 ~~~iPg~~v~~--Psd~~e~~~~l~~a~~~--~~~~P~~ir~~ 171 (178)
T PF02779_consen 133 LRSIPGMKVVV--PSDPAEAKGLLRAAIRR--ESDGPVYIREP 171 (178)
T ss_dssp HHTSTTEEEEE---SSHHHHHHHHHHHHHS--SSSSEEEEEEE
T ss_pred ccccccccccc--CCCHHHHHHHHHHHHHh--CCCCeEEEEee
Confidence 3443 555554 34899999999998862 24789998664
No 217
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=91.17 E-value=1.6 Score=44.99 Aligned_cols=83 Identities=16% Similarity=0.130 Sum_probs=53.0
Q ss_pred cccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhh
Q 022717 89 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAI 167 (293)
Q Consensus 89 a~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r 167 (293)
.|.+ -.++++.+++..++||++|....+++.........+..|++- .++. |+.+++ --|..++..+++.+++
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedia~-lr~iPn~~v~~--PaD~~E~~~~~~~a~~--- 502 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQLAS-LRAIPNLSVWR--PCDGNETAAAWKYALE--- 502 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHHHH-HhcCCCCEEEe--eCCHHHHHHHHHHHHh---
Confidence 5554 556788899999999999998877764322211122333332 2332 444444 3488889998888884
Q ss_pred ccCCcEEEEEE
Q 022717 168 GEGRPILIEAL 178 (293)
Q Consensus 168 ~~~gP~lIe~~ 178 (293)
..++|++|-..
T Consensus 503 ~~~gP~~irl~ 513 (653)
T TIGR00232 503 SQDGPTALILS 513 (653)
T ss_pred cCCCcEEEEEc
Confidence 25789988553
No 218
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=90.52 E-value=2 Score=43.81 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=67.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--CCCEEEEEEeCCccccccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a 139 (293)
+.+|+|+++| +.++++.+-=.+++ ...|.|-.++.. .+|+|+++-|. -+-. +.+....|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~-~gp~---~~~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADD-PSMH---SSQNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccC-CCCc---cchhhHhHHH-HHHh
Confidence 4567787776 33455554434443 345666555544 45777766654 2211 1111122322 4555
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
.+|+++ +-.|+.+++....+|++.+.+..-|++|-..+ .-+|+.
T Consensus 126 ~~~~vl--~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~~ 169 (595)
T TIGR03336 126 AKIPCL--EPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHMR 169 (595)
T ss_pred cCCeEE--CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccce
Confidence 688855 44589999999999999999999999998875 345654
No 219
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=90.31 E-value=2.5 Score=41.75 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=62.4
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHh--------hcCCCEEEEEEeCCcccc
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAIS 121 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~--------~~~lpvi~vi~NN~~~~~ 121 (293)
+++...-.=...+++|+|+|++ .-++++.++.= .|.+=.+.+-.|.++ .+++||+|+..|.+++..
T Consensus 190 R~id~gIaEq~~vg~AaGlA~~-----G~rPiv~~~~~-~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~ 263 (464)
T PRK11892 190 RVIDTPITEHGFAGIGVGAAFA-----GLKPIVEFMTF-NFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARV 263 (464)
T ss_pred ceeecCccHHHHHHHHHHHHhC-----CCEEEEEEehH-HHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCC
Confidence 4444322223345567777664 23444444321 122223444556677 889999999888776543
Q ss_pred ccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 122 TPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 122 ~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
.. +.+..++ .+.+.+ |+.++. -.|+.+....++.|++ .++|++|-
T Consensus 264 G~---hhs~~d~-a~~~~iPgl~V~~--P~d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 264 AA---QHSQDYA-AWYSHIPGLKVVA--PYSAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred CC---ccccCHH-HHHhhCCCCEEEE--eCCHHHHHHHHHHHhh----CCCcEEEE
Confidence 32 2222333 344433 454443 3488888888888885 47898873
No 220
>PTZ00089 transketolase; Provisional
Probab=90.14 E-value=2.4 Score=43.79 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=66.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
+.+|.|+|+. +.-+++++.+. .|.+ -.++.+..++..+|||+||+...+++....-.... .+.+++---.
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq---~iedia~lR~ 485 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ---PVETLALLRA 485 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc---cHHHHHHHhc
Confidence 4456666651 22245555553 7765 66777999999999999999888876532222222 2344443334
Q ss_pred ceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 142 VRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 142 ~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
+|.+.| .--|..++..+++.|++ ..++|+.|-..
T Consensus 486 iPn~~V~~PaD~~E~~~~l~~al~---~~~gP~~irl~ 520 (661)
T PTZ00089 486 TPNLLVIRPADGTETSGAYALALA---NAKTPTILCLS 520 (661)
T ss_pred CCCcEEEecCCHHHHHHHHHHHHH---cCCCCEEEEec
Confidence 555543 34588889888888874 25789998763
No 221
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=90.00 E-value=2.2 Score=43.88 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHH-HHHhhcCCCEEEEEEeCCcc-ccccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal-~~A~~~~lpvi~vi~NN~~~-~~~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|++ .-+++++++ ..|.+ -.++.+ +.++..++|++|++...++. ..+++.. ...|++ --
T Consensus 374 vg~AaGlA~~-----G~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq--~~~dia---~l 440 (641)
T PRK12571 374 VTFAAGLAAA-----GLKPFCAVY--STFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHA--GAFDLA---FL 440 (641)
T ss_pred HHHHHHHHHC-----CCEEEEEeh--HHHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCcccc--ccHHHH---HH
Confidence 4556666652 234444444 35655 334444 66889999999999766653 1222222 223333 22
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
-.+|.+.| --.|+.++..+++.|++. .++|++|-..
T Consensus 441 r~iPnl~V~~Psd~~e~~~~l~~a~~~---~~~P~~ir~~ 477 (641)
T PRK12571 441 TNLPNMTVMAPRDEAELRHMLRTAAAH---DDGPIAVRFP 477 (641)
T ss_pred hcCCCCEEEeeCCHHHHHHHHHHHHhC---CCCcEEEEEe
Confidence 23444442 345888999999888852 3799998654
No 222
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=89.91 E-value=2.8 Score=42.57 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=59.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc-ccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~-~~~~~~~~~~d~~~~a~a~ 140 (293)
+++|.|+|+. +.++|+.+ =..|.+=.+.+-.+.++..++|++++....++... +++.. ...|++-+..-=
T Consensus 334 vg~A~GlA~~------G~~p~~~~-f~~F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~iP 404 (580)
T PRK05444 334 VTFAAGLATE------GLKPVVAI-YSTFLQRAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCIP 404 (580)
T ss_pred HHHHHHHHHC------CCeeEEEe-eHHHHHHHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcCC
Confidence 4456676663 23444444 44665433333556688899999999987775321 22221 223333222212
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
|+.++. -.|+.++..+++.|++. .++|++|..
T Consensus 405 ~l~V~~--Psd~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 405 NMVIMA--PSDENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCEEEe--eCCHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 444444 45899999999998862 378998855
No 223
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=89.22 E-value=4.9 Score=38.33 Aligned_cols=112 Identities=20% Similarity=0.140 Sum_probs=60.2
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcC--------CCEEEEEEeCCccc
Q 022717 49 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE--------APVIFICRNNGWAI 120 (293)
Q Consensus 49 ~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~--------lpvi~vi~NN~~~~ 120 (293)
.+++...-.=...++.|+|+|++ ..++++++.. ..|.+=.+.+-.+-++.++ +||+|+..+ +...
T Consensus 74 ~R~~d~GIAEq~~vg~AaGlA~~-----G~~P~v~~~~-~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~ 146 (356)
T PLN02683 74 DRVLDTPITEAGFTGIGVGAAYA-----GLKPVVEFMT-FNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAA 146 (356)
T ss_pred CcEEECchhHHHHHHHHHHHHHC-----CCEEEEEEeh-hhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCC
Confidence 34444333333445667776664 2244444431 1222223444456667666 999999877 4322
Q ss_pred -cccccCccCcccHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 121 -STPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 121 -~~~~~~~~~~~d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
..++.. ..+ ....+.. |+.++. -.|+.++...++.|++ .++|++|-.
T Consensus 147 g~G~tH~---~~~-~a~lr~iPnl~V~~--Pad~~e~~~~l~~a~~----~~gPv~ir~ 195 (356)
T PLN02683 147 GVGAQHS---QCF-AAWYSSVPGLKVLA--PYSSEDARGLLKAAIR----DPDPVVFLE 195 (356)
T ss_pred CCCCccc---cCH-HHHHhcCCCCEEEE--eCCHHHHHHHHHHHHh----CCCcEEEEE
Confidence 222221 112 2344443 455444 3488899998888875 478999853
No 224
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.99 E-value=2.9 Score=42.99 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=57.1
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~~~~a~a~ 140 (293)
+++|+|+|+. .-+++++++ +.|.+-.+.+-.+.++..++||+|++...++.. .+++.. ...|+ +-.-
T Consensus 412 Vg~AaGLA~~-----G~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~--~~~Di---a~lr 479 (641)
T PLN02234 412 VTFAAGLACE-----GLKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHC--GAFDV---TFMA 479 (641)
T ss_pred HHHHHHHHHC-----CCeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccc--ccHHH---HHHh
Confidence 4456666553 234444443 455543444444677889999999998777531 222221 12232 2222
Q ss_pred CceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 141 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 141 G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
.+|.+.| .-.|+.++..+++.|... .++|++|-
T Consensus 480 ~iPnl~V~~Psd~~E~~~~l~~a~~~---~~~Pv~ir 513 (641)
T PLN02234 480 CLPNMIVMAPSDEAELFNMVATAAAI---DDRPSCFR 513 (641)
T ss_pred cCCCCEEEeeCCHHHHHHHHHHHHhC---CCCCEEEE
Confidence 3454443 335888888888887652 46899883
No 225
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.84 E-value=3.4 Score=42.91 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=61.7
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~~~~a~a 139 (293)
.+..|.|+|.. .-++++++. ..|.+=.+.+-.+-++..++||+|++..-++.. .+++. ....|++ --
T Consensus 435 aVt~AAGLA~~-----G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH--~g~~Dia---~l 502 (701)
T PLN02225 435 AVTFSAGLSSG-----GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQ--CGAFDIA---FM 502 (701)
T ss_pred HHHHHHHHHHC-----CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCccc--cccHHHH---HH
Confidence 34556666643 345666777 467654455555568899999999998755432 12221 1223432 22
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
-.+|.++| .-.|+.++...++.|+. ..++|++|-..
T Consensus 503 r~IPnm~V~aPsD~~El~~mL~~A~~---~~~gPv~IR~p 539 (701)
T PLN02225 503 SSLPNMIAMAPADEDELVNMVATAAY---VTDRPVCFRFP 539 (701)
T ss_pred hcCCCCEEEeeCCHHHHHHHHHHHHh---cCCCCEEEEec
Confidence 23455543 34588899988888774 24689998653
No 226
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=88.72 E-value=7.1 Score=35.75 Aligned_cols=84 Identities=17% Similarity=0.032 Sum_probs=57.7
Q ss_pred eEEEEeCccc--ccchHHHHHHHHHhhcCCCEEEEEEeCC-c--ccccccc--CccCc-ccHHHHHhhcCceEEEEeCCC
Q 022717 80 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNG-W--AISTPIS--DQFRS-DGAVVKGRAYGVRSIRVDGND 151 (293)
Q Consensus 80 ~vv~~~GDGa--~~~G~~~Eal~~A~~~~lpvi~vi~NN~-~--~~~~~~~--~~~~~-~d~~~~a~a~G~~~~~VdG~D 151 (293)
.+++++.||. +.+|.....+.-|...++-++||+.+|. - +|....+ ..... ..+..+...|++|++.|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 7888877778888888887666666554 2 3321110 00111 156678899999998864 38
Q ss_pred HHHHHHHHHHHHH
Q 022717 152 ALAIYSAVHAARE 164 (293)
Q Consensus 152 ~~~v~~a~~~a~~ 164 (293)
+.++-+++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8888888877664
No 227
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.50 E-value=3.7 Score=42.52 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=59.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccc-cccccCccCcccHHHHHhhc
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 140 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~-~~~~~~~~~~~d~~~~a~a~ 140 (293)
++.|.|+|+. .-+++++++ ..|.+=.+.+-++-++..++||+|++...++.. .+++.. ...|+ +-.-
T Consensus 411 vg~AaGLA~~-----G~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~--~~~Di---a~lr 478 (677)
T PLN02582 411 VTFAAGLACE-----GLKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHC--GAFDV---TYMA 478 (677)
T ss_pred HHHHHHHHHC-----CCeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCccc--ccHHH---HHHh
Confidence 4456666552 234555554 456553444456777899999999999776632 222221 22233 2222
Q ss_pred CceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 141 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 141 G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+|.+.| .-.|..++..+++.|++. .++|++|..
T Consensus 479 ~iPnl~V~~Psd~~E~~~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 479 CLPNMVVMAPSDEAELFHMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred cCCCCEEEeeCCHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 3444443 345888899988888852 358999854
No 228
>PRK05899 transketolase; Reviewed
Probab=88.23 E-value=4.4 Score=41.52 Aligned_cols=101 Identities=18% Similarity=0.095 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc--ccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~--~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|+. +.-+++++.+ ..|. .-.++.+.+++..++|++++....+++.. +++. . .+.+++--
T Consensus 380 vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH--q---~~edia~~ 447 (624)
T PRK05899 380 AAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH--Q---PVEQLASL 447 (624)
T ss_pred HHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc--c---cHHHHHHH
Confidence 4556666543 2133333322 3554 46677888888899999999988887543 3333 1 23333333
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
-.+|.++| .-.|+.++..+++.+++. .++|++|-.
T Consensus 448 r~iP~~~V~~P~d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 448 RAIPNLTVIRPADANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred HhCCCcEEEeCCCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 34455543 445888999999988851 278998866
No 229
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=87.11 E-value=2.7 Score=47.91 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCc
Q 022717 63 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 142 (293)
Q Consensus 63 p~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (293)
-+|.|.|.+. +.-.+++|..|=|.++ ..-++..|..-+.|+|+|.-+-..........| ..|...+++.+--
T Consensus 353 fmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q--~iDq~~lf~pvtK 424 (1655)
T PLN02980 353 FHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQ--AINQVNHFGSFVR 424 (1655)
T ss_pred HHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCc--ccchhhHHHhhhh
Confidence 3566776654 3455666777888775 445677888889999999876553221111111 1245556666655
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 022717 143 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 178 (293)
Q Consensus 143 ~~~~VdG~D~~~------v~~a~~~a~~~~r~~-~gP~lIe~~ 178 (293)
...+|. ++++ +..++++|+..++.+ .||+.|++-
T Consensus 425 ~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 425 FFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred eeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 556663 3333 346777787777776 499999997
No 230
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=86.96 E-value=5.7 Score=38.02 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=75.5
Q ss_pred CccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccc-ccCccCcccHHHHHh
Q 022717 60 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISDQFRSDGAVVKGR 138 (293)
Q Consensus 60 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~-~~~~~~~~d~~~~a~ 138 (293)
+.+++++|++++- .+..-...|.|-. -.+|.|.+|+-..+|+++++.+........ +.. ...|+.. ++
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~-~r 126 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMA-AR 126 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHH-HH
Confidence 3477788888773 3445555566655 367899999999999988888776544322 211 1224432 22
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
.-||+.+... |+.+.+...-.|++.+-+..-|+++-..-++. .|.
T Consensus 127 ~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~-~h~ 171 (365)
T COG0674 127 DTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLA-SHE 171 (365)
T ss_pred ccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchh-cCc
Confidence 2278877766 78787777778888877778899988777654 344
No 231
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=86.88 E-value=4.4 Score=39.55 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhc-Cc
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GV 142 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~-G~ 142 (293)
+|-|.|.+. ++..+|++..|-|+++ . -.-|.-|-.-+.|++++- .+..-+.-..+.+...|+..+-+++ -|
T Consensus 144 aAegYaR~s---gKPGvvlvTSGPGATN--v-vtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKw 215 (675)
T KOG4166|consen 144 AAEGYARSS---GKPGVVLVTSGPGATN--V-VTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKW 215 (675)
T ss_pred hhhhhhhhc---CCCcEEEEecCCCccc--c-cchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeecccee
Confidence 355666554 4677899999999997 2 223666666778866542 2321111111222223444444444 34
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEE
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 177 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~-~gP~lIe~ 177 (293)
+++. . |++++-+-+.+|++.+-.+ .||+||++
T Consensus 216 NvmV-k--dVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 216 NVMV-K--DVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred heee-e--cHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 4443 2 7899999999999877665 68899877
No 232
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=86.72 E-value=3.8 Score=34.01 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=67.7
Q ss_pred cCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccC-cccHHHHH
Q 022717 59 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKG 137 (293)
Q Consensus 59 G~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~-~~d~~~~a 137 (293)
.-+++++.|+.+|-+ ...+ ++-..+.+. ++..--.+-..+++|++.++..-++-... .+.|.+ ..-+-++-
T Consensus 52 Eeg~GIcAGa~lAGk-----k~ai-lmQnsGlGN-siNal~SL~~ty~iPl~ml~ShRG~~~E~-i~AQVpmGr~~~kiL 123 (172)
T COG4032 52 EEGVGICAGAYLAGK-----KPAI-LMQNSGLGN-SINALASLYVTYKIPLLMLASHRGVLKEG-IEAQVPMGRALPKIL 123 (172)
T ss_pred hcceeeehhhhhcCC-----CcEE-EEeccCcch-HHHHHHHHHHHhccchhhhhhccchhhcC-CccccccchhhHHHH
Confidence 445677889988842 3333 333333321 22222223456889999998887763221 111211 12345778
Q ss_pred hhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 138 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 138 ~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+..++|.++.. .+++-+..+..+...+-+.+.|+.+-+
T Consensus 124 e~~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 124 EGLELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhcCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 88999999987 477777888888877777888987655
No 233
>PLN02790 transketolase
Probab=86.63 E-value=5.3 Score=41.26 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCc
Q 022717 94 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRP 172 (293)
Q Consensus 94 ~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP 172 (293)
...+++..++..++||+||+...+.+........ ..+.+++---.+|.+.| .--|..++..+++.|++ ..++|
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~TH---q~iedla~lR~iPnl~V~~PaD~~E~~~~l~~al~---~~~gP 504 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTH---QPIEHLASLRAMPNILMLRPADGNETAGAYKVAVT---NRKRP 504 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCc---ccHHHHHHhcCCCCcEEEeCCCHHHHHHHHHHHHH---cCCCC
Confidence 4566788899999999999988887643221111 22444444445555553 44588888888888875 24689
Q ss_pred EEEEEE
Q 022717 173 ILIEAL 178 (293)
Q Consensus 173 ~lIe~~ 178 (293)
+.|-..
T Consensus 505 ~~irl~ 510 (654)
T PLN02790 505 TVLALS 510 (654)
T ss_pred EEEEec
Confidence 888653
No 234
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=86.55 E-value=6 Score=40.27 Aligned_cols=101 Identities=9% Similarity=0.009 Sum_probs=59.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
++.|.|+|+. + -+++++.+. .|.+-.+.+-.+-++..++||+|++...++.-.+++.. ...|+ +---.
T Consensus 333 v~~AaGlA~~----G-~~Pvv~~fs--~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~--~~~Di---a~lr~ 400 (581)
T PRK12315 333 VAFASGIAAN----G-ARPVIFVNS--TFLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHL--GIFDI---PMISN 400 (581)
T ss_pred HHHHHHHHHC----c-CeEEEEeeH--HHHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCcccc--ccHHH---HHHhc
Confidence 4556666542 2 344444443 35443343445557889999999998766654333322 22333 22224
Q ss_pred ceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 142 VRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 142 ~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+|.+.| --.|+.++..+++.|++ ..++|++|-.
T Consensus 401 iPnl~V~~P~d~~e~~~~l~~a~~---~~~gP~~ir~ 434 (581)
T PRK12315 401 IPNLVYLAPTTKEELIAMLEWALT---QHEHPVAIRV 434 (581)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHh---CCCCcEEEEE
Confidence 455543 44588899999988885 2368999866
No 235
>PRK12753 transketolase; Reviewed
Probab=86.34 E-value=5.5 Score=41.25 Aligned_cols=104 Identities=13% Similarity=-0.033 Sum_probs=65.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
+++|.|+|+- +.-.++++.+ +.|.+ -.++.+.+++..++||+||....+++......... .+.+++---.
T Consensus 415 v~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq---~iedla~lR~ 484 (663)
T PRK12753 415 TAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQ---PVEQLASLRL 484 (663)
T ss_pred HHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccc---cHHHHHHHhc
Confidence 4556666651 1223444444 36655 67788999999999999999999887643222222 2344443334
Q ss_pred ceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 142 VRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 142 ~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
+|.+.| .--|..++..+++.|++. .++|+.|-..
T Consensus 485 iPn~~v~~PaD~~E~~~~~~~al~~---~~gP~~irl~ 519 (663)
T PRK12753 485 TPNFSTWRPCDQVEAAVAWKLAIER---HNGPTALILS 519 (663)
T ss_pred CCCCEEEccCCHHHHHHHHHHHHhc---CCCCEEEEec
Confidence 554443 334788888888888852 4789888664
No 236
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=84.98 E-value=3.6 Score=41.92 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 022717 94 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 173 (293)
Q Consensus 94 ~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~ 173 (293)
...-++.+|++.++|++||..-..++.........+.+.++.+=.--++.++|-- |..+...+.+.|+++ .++|+
T Consensus 440 Y~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~gPt 514 (663)
T COG0021 440 YARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDGPT 514 (663)
T ss_pred hhhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCCCe
Confidence 3455799999999999999999998775333222233444443333466677632 556777888888874 58999
Q ss_pred EEEEE
Q 022717 174 LIEAL 178 (293)
Q Consensus 174 lIe~~ 178 (293)
+|...
T Consensus 515 ~Lilt 519 (663)
T COG0021 515 ALILT 519 (663)
T ss_pred EEEEe
Confidence 98664
No 237
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=84.39 E-value=7.8 Score=38.82 Aligned_cols=109 Identities=20% Similarity=0.130 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccc-c--cccCccCc---ccHH
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-T--PISDQFRS---DGAV 134 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~-~--~~~~~~~~---~d~~ 134 (293)
..-+|-|.|.+. + ..++++..|=|+++. + -++..|-..+.|+|+|.-.-..... . ........ .++.
T Consensus 51 A~~mAdgyar~t---g-~gv~~~t~GPG~~n~--~-~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~ 123 (539)
T TIGR03393 51 AAYAADGYARCK---G-AAALLTTFGVGELSA--I-NGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFY 123 (539)
T ss_pred HHHHhhhhhhhc---C-ceEEEEecCccHHHH--h-hHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHH
Confidence 344566666554 3 245666779998862 2 3466788889999999854332100 0 00000001 1223
Q ss_pred HHHhhcCceEEEEeCCC-HHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 135 VKGRAYGVRSIRVDGND-ALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 135 ~~a~a~G~~~~~VdG~D-~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
+.++..-.....++-.+ +..+.++++.|+. ..+|++|++-..
T Consensus 124 ~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~----~~gPv~l~iP~D 166 (539)
T TIGR03393 124 RMAAEVTVAQAVLTEQNATAEIDRVITTALR----ERRPGYLMLPVD 166 (539)
T ss_pred HHhhceEEEEEEeChhhhHHHHHHHHHHHHh----cCCCEEEEeccc
Confidence 33443322233343334 5666666666664 578999999764
No 238
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=83.80 E-value=13 Score=35.00 Aligned_cols=104 Identities=19% Similarity=0.115 Sum_probs=55.2
Q ss_pred CccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--------CCCEEEEEEeCCccccccccCccCcc
Q 022717 60 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 131 (293)
Q Consensus 60 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--------~lpvi~vi~NN~~~~~~~~~~~~~~~ 131 (293)
..++.|+|+|++ ..++++++.. ..|.+=.+.+-.+-++.. ++|+++...+..++...++..+
T Consensus 62 ~~vg~AaGlA~~-----G~~Piv~~~~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~---- 131 (327)
T PRK09212 62 GFAGLAVGAAFA-----GLRPIVEFMT-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQ---- 131 (327)
T ss_pred HHHHHHHHHHHc-----CCeeEEEeeh-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCccccc----
Confidence 345566676653 2344545443 122221233333444554 4678877665444443333222
Q ss_pred cHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 132 GAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 132 d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.+..+.+ .+|.++| .-.|+.++..+++.|++ .++|++|-..-
T Consensus 132 ~~ea~~r--~iP~l~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~ 174 (327)
T PRK09212 132 CYAAWYS--HIPGLKVVAPYFAADCKGLLKTAIR----DPNPVIFLENE 174 (327)
T ss_pred CHHHHHh--cCCCCEEEeeCCHHHHHHHHHHHHh----CCCcEEEEEch
Confidence 2323333 3455543 44588999999988885 47899985443
No 239
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=83.59 E-value=13 Score=35.55 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=52.5
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEE-eCcccccchHHHHHHHHHhhc--------CCCEEEEEEeCCccccccccCccCcc
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 131 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~-~GDGa~~~G~~~Eal~~A~~~--------~lpvi~vi~NN~~~~~~~~~~~~~~~ 131 (293)
.++.|.|+|++ + .++++++ +. .|.+-.+.+-.+-++.+ ++|++++.....++..+++..+
T Consensus 94 ~vg~AaGlA~~----G-~~Pvv~~~fa--~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~---- 162 (355)
T PTZ00182 94 FAGFAIGAAMN----G-LRPIAEFMFA--DFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQ---- 162 (355)
T ss_pred HHHHHHHHHhC----C-CEEEEEechh--hHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccc----
Confidence 35556666653 2 2334433 33 33333344434445553 5677766544445444444322
Q ss_pred cHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 132 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 132 d~~~~a~a~-G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
.+..+.+.+ |+.++. -.|+.++..+++.+++ .++|++|-
T Consensus 163 ~~ea~lr~iPn~~V~~--Psd~~e~~~~l~~a~~----~~~P~~i~ 202 (355)
T PTZ00182 163 SFEAYFAHVPGLKVVA--PSDPEDAKGLLKAAIR----DPNPVVFF 202 (355)
T ss_pred hHHHHHhcCCCCEEEe--eCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 222333333 444443 3488899998888886 47899773
No 240
>PRK12754 transketolase; Reviewed
Probab=82.75 E-value=9.4 Score=39.54 Aligned_cols=104 Identities=11% Similarity=-0.027 Sum_probs=65.0
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.++|.|+|+- +.-.+.++.+ ..|.+ -..+.+.+++..++||++|....+++....-.... .+.+++---.
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq---~iEdla~lR~ 484 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQ---PVEQVASLRV 484 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcc---cHHHHHHHhc
Confidence 3556666652 1123333333 25654 67788999999999999999998887643222222 3444444444
Q ss_pred ceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 142 VRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 142 ~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
+|.+.| .--|..++..+++.+++. .++|+.|-..
T Consensus 485 iPn~~V~~PaD~~E~~~~~~~a~~~---~~gP~yirl~ 519 (663)
T PRK12754 485 TPNMSTWRPCDQVESAVAWKYGVER---QDGPTALILS 519 (663)
T ss_pred CCCcEEecCCCHHHHHHHHHHHHhC---CCCCEEEEeC
Confidence 555553 445888888888888862 3689977553
No 241
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=78.88 E-value=4 Score=24.57 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 022717 208 DPVTRFRKWIESNGWWNGDIESELRSSVR 236 (293)
Q Consensus 208 dPi~~~~~~L~~~g~~~~~~~~~i~~~~~ 236 (293)
+++..++. |.++|++|++|..+.++++.
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHHh
Confidence 34555555 67899999999999887763
No 242
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=77.66 E-value=29 Score=28.84 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=54.4
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcC-CCEEEEEEe-CCccccccccCccCcccHHHHHhh
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRN-NGWAISTPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~-lpvi~vi~N-N~~~~~~~~~~~~~~~d~~~~a~a 139 (293)
+++|.|+|+. +. ++++++... |.. ...+.+.+...++ +|+|+.... ..++...++.. +..++ +--
T Consensus 62 vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~--~~~~~---~~~ 128 (168)
T smart00861 62 VGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHH--SQEDE---ALL 128 (168)
T ss_pred HHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCcccc--chhHH---HHH
Confidence 3445555554 33 455555533 322 3556677777777 555555533 33333333221 12222 222
Q ss_pred cCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 140 YGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
-++|.+. +.-.|+.++...++.+++ ..++|++|-.
T Consensus 129 ~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~ 164 (168)
T smart00861 129 RAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRL 164 (168)
T ss_pred hcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 3455444 355689999999999884 2468977654
No 243
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=77.13 E-value=19 Score=33.48 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=62.0
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHH-HHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~-~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a 139 (293)
.++.|+|.|++- ..+.++ +=+.|..+-.||=+. ..+..+|||-+|+.+-+++.....+.. .-+.++|--
T Consensus 61 mvg~AAGLA~~G-----k~Pfv~--tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sH---q~~EDiaim 130 (312)
T COG3958 61 MVGTAAGLALAG-----KKPFVS--TFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSH---QALEDIAIM 130 (312)
T ss_pred HHHHHHHHHhcC-----CCceee--chHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccc---hhHHHHHHH
Confidence 356677777763 233443 345777666666554 456678999999999987653222111 123444544
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 140 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 140 ~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
-|+|-..| .-.|..+..+++..+.+ .+||+.+-.
T Consensus 131 R~lpn~~V~~P~D~v~~~~i~~~~~~----~~GP~Y~Rl 165 (312)
T COG3958 131 RGLPNMTVIAPADAVETRAILDQIAD----YKGPVYMRL 165 (312)
T ss_pred hcCCCceEEccCcHHHHHHHHHHHHh----cCCCEEEEe
Confidence 45555543 44566666666666555 699998755
No 244
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=77.07 E-value=28 Score=32.70 Aligned_cols=111 Identities=11% Similarity=0.016 Sum_probs=54.0
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhc--------CCCEEEEEEeCCcccc
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAIS 121 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~--------~lpvi~vi~NN~~~~~ 121 (293)
+++...-.=...++.|+|+|++ ..+++++.+.---++ =.+.+-.+-++.+ ++|++++.-.-.++..
T Consensus 52 R~~n~gIaEq~~vg~AaGlA~~-----G~~pvv~~~~~~f~~-ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~ 125 (327)
T CHL00144 52 RVLDTPIAENSFTGMAIGAAMT-----GLRPIVEGMNMGFLL-LAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQL 125 (327)
T ss_pred cEeeccccHHHHHHHHHHHHHC-----CCEEEEEeehhhHHH-HHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCC
Confidence 4554333333345667777664 234444434311111 1223323444444 5677776332112122
Q ss_pred ccccCccCcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 022717 122 TPISDQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIE 176 (293)
Q Consensus 122 ~~~~~~~~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe 176 (293)
+++.. ..+..+.+ .+|+++| .-.|+.+.+..++.|++ .++|++|-
T Consensus 126 G~tHs----~~~ea~~~--~iPgl~V~~Psd~~d~~~~l~~a~~----~~~Pv~ir 171 (327)
T CHL00144 126 GAEHS----QRLESYFQ--SVPGLQIVACSTPYNAKGLLKSAIR----SNNPVIFF 171 (327)
T ss_pred Ccccc----ccHHHHHh--cCCCCEEEEeCCHHHHHHHHHHHHh----CCCcEEEE
Confidence 22211 12333333 4455543 33588899998888875 57899874
No 245
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=76.02 E-value=11 Score=29.78 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=28.0
Q ss_pred ccHHHHHhhcCceEEE--EeCCCH-HHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 131 DGAVVKGRAYGVRSIR--VDGNDA-LAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~--VdG~D~-~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.++.+.++++|+.+++ |.+.++ .+-..++.++++ +..+|+++.|.+
T Consensus 47 ~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~s 95 (110)
T PF04273_consen 47 AEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRS 95 (110)
T ss_dssp HCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SC
T ss_pred HHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCC
Confidence 4567889999998887 555443 234444555554 467899999965
No 246
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=72.72 E-value=23 Score=36.15 Aligned_cols=113 Identities=14% Similarity=0.173 Sum_probs=65.9
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-cccccccCcc
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQF 128 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~~~~ 128 (293)
+++...-.=...+..|.|+|.+ .-++|+++-- .|-|=..-+-+-=.+..||||+|+|+-.+. +.+.++...
T Consensus 359 R~fDVGIAEQHAVT~AAGlA~~-----G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G- 430 (627)
T COG1154 359 RFFDVGIAEQHAVTFAAGLAAE-----GMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQG- 430 (627)
T ss_pred hheehhhhHHHHHHHHHHHHhC-----CCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCcccc-
Confidence 4444322333344445555443 3456666652 343333444444578899999999996664 444444322
Q ss_pred CcccHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 129 RSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 129 ~~~d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+.+++----+|.+.+ --.|..++...+..|+.+ .++|+.|..
T Consensus 431 ----~fDls~l~~iPnmvi~aP~de~el~~ml~ta~~~---~~gP~AiRy 473 (627)
T COG1154 431 ----LFDLSFLRCIPNMVIMAPRDEEELRQMLYTALAQ---DDGPVAIRY 473 (627)
T ss_pred ----HHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhc---CCCCeEEEe
Confidence 223222224666664 446888999988888874 558999865
No 247
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=69.93 E-value=40 Score=30.74 Aligned_cols=98 Identities=17% Similarity=0.110 Sum_probs=61.9
Q ss_pred cccCccHHHHHHHHHhhh------cCC-CceEEEEeCccccc----chHHHHHHHHHhhcCC-CEEEEEEeCCccccccc
Q 022717 57 TIATQLPHAVGAAYALKM------DRK-DACAVTYFGDGGTS----EGDFHAALNFSAVTEA-PVIFICRNNGWAISTPI 124 (293)
Q Consensus 57 ~lG~~lp~A~G~A~a~k~------~~~-~~~vv~~~GDGa~~----~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~ 124 (293)
+.|...|++-|...|... +++ ...+++++-||=.+ .|...|++..|....+ ++.+++.|-.-+
T Consensus 149 ~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~----- 223 (261)
T COG1240 149 PTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGS----- 223 (261)
T ss_pred CCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCc-----
Confidence 566777777766655432 233 46788889999763 4456788888877765 544444431111
Q ss_pred cCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 125 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 125 ~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
. ....-..++|..+|.++++.+......+..+.+.
T Consensus 224 -~-~~~g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 224 -E-VRLGLAEEIARASGGEYYHLDDLSDDSIVSAVRQ 258 (261)
T ss_pred -c-ccccHHHHHHHHhCCeEEecccccchHHHHHHHh
Confidence 1 1111235789999999999997776677666554
No 248
>PRK13683 hypothetical protein; Provisional
Probab=68.60 E-value=5.5 Score=29.92 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=30.7
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
+-+.+.+=+-.|.+++|.-++.|++ .+.|.+||..|.+..
T Consensus 13 ~P~SVQRKe~edA~alYq~I~~am~----sg~P~llELtCek~~ 52 (87)
T PRK13683 13 MPISVQRKEAEDAEALYQQIRQAMR----SGNPRLLELTCEKVE 52 (87)
T ss_pred cceEEEeccHHHHHHHHHHHHHHHh----cCCCcEEEEEecCcC
Confidence 3344555555688899999999986 588999999998743
No 249
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=67.73 E-value=8.2 Score=39.06 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcC--CCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 94 DFHAALNFSAVTE--APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 94 ~~~Eal~~A~~~~--lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
....+|.-+.+++ +|++++++|..-.-++ .-.+.++.||++.+.||+|.|.+..
T Consensus 403 Dl~~aLED~~RhGqKlPL~VlvDnGsTeEDi---------pA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 403 DLNFALEDAHRHGQKLPLLVLVDNGSTEEDI---------PAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred hHHHHHHHHHhcCCccceEEEEcCCCccccc---------HHHHHHHhcCCCEEEEcCCCCcchh
Confidence 4556677788874 7999998875432221 2356789999999999999887643
No 250
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=66.90 E-value=28 Score=35.06 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=55.8
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|.-.-...... .......|....++.+-
T Consensus 60 ~~aAdgyar~t---g~~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~IsG~~~~~~~~--~~~~q~~d~~~~~~~~t 131 (568)
T PRK07449 60 GFLALGLAKAS---KRPVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVLTADRPPELRD--CGANQAIDQLGLFGSYP 131 (568)
T ss_pred HHHHHHHHHhh---CCCEEEEECCccHHHh---hhHHHHHHhhcCCcEEEEECCCCHHHhc--CCCCceecHhhHhhhhh
Confidence 34566666553 3344667777888886 2345778888899999996543221111 01111224444555544
Q ss_pred ceEEEEeCC---CHHH-HHHHHHHHHHHhhc-cCCcEEEEEEee
Q 022717 142 VRSIRVDGN---DALA-IYSAVHAAREMAIG-EGRPILIEALTY 180 (293)
Q Consensus 142 ~~~~~VdG~---D~~~-v~~a~~~a~~~~r~-~~gP~lIe~~t~ 180 (293)
...++.... .... +..+++.+.. +.. ..||+.|++-..
T Consensus 132 ~~~v~~~~~~~~~~~~~~~~~~~a~~~-a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 132 FTSLALPEPTQDILAYWLVTTIDAALA-AQTLQAGPVHINCPFR 174 (568)
T ss_pred hhccCCCCCCchhHHHHHHHHHHHHHH-hcCCCCCCEEEeCCCC
Confidence 222222111 1111 2333333332 322 479999999753
No 251
>PRK11032 hypothetical protein; Provisional
Probab=66.89 E-value=21 Score=30.12 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc
Q 022717 210 VTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLF 258 (293)
Q Consensus 210 i~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~ 258 (293)
|...++++.+.|-+|++|++.+.+-++..+.+..+..+....+-.+++|
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~ 78 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVF 78 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccccHH
Confidence 6778999999999999999999999999999988876665544333444
No 252
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=64.92 E-value=32 Score=27.64 Aligned_cols=91 Identities=16% Similarity=0.028 Sum_probs=50.0
Q ss_pred CccHHHHHHHHHhhhc-C--CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHH
Q 022717 60 TQLPHAVGAAYALKMD-R--KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVK 136 (293)
Q Consensus 60 ~~lp~A~G~A~a~k~~-~--~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~ 136 (293)
.+-++.-|+..|.++- . ..++.++++.||.-. +...+.+..+...+.++.+|........ ...+..+
T Consensus 78 ~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~l 147 (172)
T PF13519_consen 78 GGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRL 147 (172)
T ss_dssp SS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHH
Confidence 3344444444444432 2 257889999999876 3444566666655656544433222111 1245677
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
++.-|..++.++ .+..++.+++++
T Consensus 148 a~~tgG~~~~~~-~~~~~l~~~~~~ 171 (172)
T PF13519_consen 148 AEATGGRYFHVD-NDPEDLDDAFQQ 171 (172)
T ss_dssp HHHTEEEEEEE--SSSHHHHHHHHH
T ss_pred HHhcCCEEEEec-CCHHHHHHHHhc
Confidence 888888888884 245677666653
No 253
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=64.86 E-value=30 Score=36.59 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=48.6
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCCEEEE-EEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v-i~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
+++.||+-|+.... ..+-.+-.+|...+.|...| |++-.. ...+..+.........+|+.+|....++.|.|+..
T Consensus 249 e~ilvcI~~~~~~e-~liR~a~RlA~~~~a~~~av~v~~~~~-~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~~ 324 (890)
T COG2205 249 ERILVCISGSPGSE-KLIRRAARLASRLHAKWTAVYVETPEL-HRLSEKEARRLHENLRLAEELGAEIVTLYGGDVAK 324 (890)
T ss_pred ceEEEEECCCCchH-HHHHHHHHHHHHhCCCeEEEEEecccc-ccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHHH
Confidence 67888888877664 37888899999999995444 333221 11111111112234578999999999999888643
No 254
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.54 E-value=20 Score=30.24 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=36.8
Q ss_pred ccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 131 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 131 ~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
...+--|++||..++-++|.+-+.+.+.++..+++ -+||..|+..+
T Consensus 21 THV~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~~ 66 (179)
T COG1303 21 THVALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFGV 66 (179)
T ss_pred hhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHh---cCCCEEEEEcc
Confidence 34566799999999999998767788888887764 79998887753
No 255
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=64.42 E-value=25 Score=30.85 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=53.4
Q ss_pred cCCCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEe
Q 022717 75 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 75 ~~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
..|+.+.....=||++ ..|....++.+|..-++ |.-+||+ +..+.....+.+++.++|+-+|++.+++.
T Consensus 121 ~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicE-----i~~~dG~mar~~~~~~fa~~h~l~~iti~ 192 (203)
T COG0108 121 RRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICE-----IMNDDGTMARLPELEEFAKEHGLPVITIE 192 (203)
T ss_pred CCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEE-----EeCCCccccChHHHHHHHHHcCCcEEEHH
Confidence 4578888888889887 57888889999999999 7777766 33332333456788899999999999875
No 256
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=63.02 E-value=81 Score=26.31 Aligned_cols=72 Identities=26% Similarity=0.182 Sum_probs=42.3
Q ss_pred ceEEEEeCcccccchH--H----HHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCH
Q 022717 79 ACAVTYFGDGGTSEGD--F----HAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 152 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~--~----~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~ 152 (293)
+.+++++.||..+.|. . .+....+...+.+++.|-.. . . .....-+.++|+.-|..++.++.-+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~-~-----~---~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTE-G-----R---PVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCC-C-----C---ccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5789999999876542 1 23334445556666544211 0 0 01112356788999999999876666
Q ss_pred HHHHHHH
Q 022717 153 LAIYSAV 159 (293)
Q Consensus 153 ~~v~~a~ 159 (293)
.++..++
T Consensus 170 ~~~~~~~ 176 (178)
T cd01451 170 DAIASAV 176 (178)
T ss_pred HHHHHHh
Confidence 5555443
No 257
>PRK10490 sensor protein KdpD; Provisional
Probab=61.30 E-value=34 Score=36.71 Aligned_cols=75 Identities=11% Similarity=-0.050 Sum_probs=45.8
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCCEE-EEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHH
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 154 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~ 154 (293)
+++.||+.|. ..++-.+.-+..+|.+.+.|++ +.|+........... .....+..++|+.+|.....+.|.|+.+
T Consensus 251 eriLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~-~~~l~~~~~lA~~lGa~~~~~~~~dva~ 326 (895)
T PRK10490 251 DAILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKK-RRAILSALRLAQELGAETATLSDPAEEK 326 (895)
T ss_pred CeEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHH-HHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 4566666666 4445577888899999999833 334433221111111 1011223468999999999999988753
No 258
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=59.77 E-value=84 Score=34.93 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=66.5
Q ss_pred cHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC
Q 022717 62 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 141 (293)
Q Consensus 62 lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G 141 (293)
+.+++|++.+ +.++..++--.++. -.+|.|-.++-..+|+|+++.+-.+.... ..-.....|+ -.++.-|
T Consensus 64 ~~av~GA~~a------Gara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~~-~~i~~dh~Dv-~~~R~~G 133 (1165)
T TIGR02176 64 AGAVHGALQT------GALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAHA-LSIFGDHQDV-MAARQTG 133 (1165)
T ss_pred HHHHHhHhhc------CCCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCCC-CccCCCchHH-HHhhcCC
Confidence 4556665543 23444444323332 34677765665688988888875543211 1111111233 2346667
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
|..+ -..++.+++.....|...+.+...|+++-..-+|. +|.
T Consensus 134 ~ivl--~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 134 FAML--ASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred eEEE--eCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 7444 34588888888888888777788899988887665 454
No 259
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=59.67 E-value=94 Score=26.35 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=44.9
Q ss_pred CceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 78 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 78 ~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
.+.++++++||+.. .+...+....++..++.|.+|-..+. ..-+.++|++-|-.++.+. |..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 35578888888754 33344556666666766544433211 1236778999998888885 777777
Q ss_pred HHHHHH
Q 022717 157 SAVHAA 162 (293)
Q Consensus 157 ~a~~~a 162 (293)
.++.++
T Consensus 173 ~~~~~~ 178 (183)
T cd01453 173 ELLLEH 178 (183)
T ss_pred HHHHhc
Confidence 766654
No 260
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=55.86 E-value=87 Score=28.97 Aligned_cols=54 Identities=6% Similarity=-0.116 Sum_probs=37.5
Q ss_pred CCceEEEEeCcccccchHHHHHHHHHhhcC-CC--EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeC
Q 022717 77 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 149 (293)
Q Consensus 77 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~-lp--vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG 149 (293)
+.+++|.+.|.|+..+ +|-.+...+ +| ++.|+.||. +..++|+.+|+|.+.++-
T Consensus 93 ~~kiavl~Sg~g~nl~-----al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 93 RPKVVIMVSKFDHCLN-----DLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CeEEEEEEeCCCccHH-----HHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 4577888888877653 454554433 55 777887763 345889999999998753
No 261
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=55.72 E-value=37 Score=32.32 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=56.6
Q ss_pred CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHH
Q 022717 77 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 156 (293)
Q Consensus 77 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~ 156 (293)
.+.+-+|+---|-....+. ..|-.|+.-.+|++.| -.+---..-..+.+...|+..+++..---.++|- .|..|-
T Consensus 66 ~gnigvcigtsgpagtdmi-tglysa~adsipilci--tgqaprarl~kedfqavdi~~ia~pv~kwavtv~--epalvp 140 (592)
T COG3960 66 AGNIGVCIGTSGPAGTDMI-TGLYSASADSIPILCI--TGQAPRARLHKEDFQAVDIEAIAKPVSKWAVTVR--EPALVP 140 (592)
T ss_pred CCceEEEecCCCCCccchh-hhhhhcccccccEEEe--cCCCchhhhchhhhhhhhHHHhhhhhhhhhhhhc--chhhhH
Confidence 4566666655554443232 3466677777786644 2222111111122234466666655432333443 677889
Q ss_pred HHHHHHHHHhhcc-CCcEEEEEEe
Q 022717 157 SAVHAAREMAIGE-GRPILIEALT 179 (293)
Q Consensus 157 ~a~~~a~~~~r~~-~gP~lIe~~t 179 (293)
.++++|+.-+|++ .||++|+...
T Consensus 141 ~v~qkafhlmrs~rpgpvlidlp~ 164 (592)
T COG3960 141 RVLQQAFHLMRSGRPGPVLIDLPF 164 (592)
T ss_pred HHHHHHHHHHhcCCCCCeEEeccc
Confidence 9999999999986 7899998754
No 262
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=55.20 E-value=78 Score=27.77 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=34.6
Q ss_pred eEEEEeCcccccchHHHHHHHHHhh-cCCC--EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeC
Q 022717 80 CAVTYFGDGGTSEGDFHAALNFSAV-TEAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 149 (293)
Q Consensus 80 ~vv~~~GDGa~~~G~~~Eal~~A~~-~~lp--vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG 149 (293)
++|.+.|-|+..+ ++--+.. ..++ +++||.||... ...++|+.+|+|++..+-
T Consensus 2 i~vl~Sg~Gsn~~-----al~~~~~~~~l~~~i~~visn~~~~------------~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSNFR-----AIHDACLDGRVNGDVVVVVTNKPGC------------GGAEYARENGIPVLVYPK 57 (207)
T ss_pred EEEEEeCCChhHH-----HHHHHHHcCCCCeEEEEEEEeCCCC------------hHHHHHHHhCCCEEEecc
Confidence 6778888887653 3433333 3354 77888887522 235678889999987654
No 263
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=52.67 E-value=38 Score=26.25 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=10.4
Q ss_pred cccCccHHHHHHHHHhhh
Q 022717 57 TIATQLPHAVGAAYALKM 74 (293)
Q Consensus 57 ~lG~~lp~A~G~A~a~k~ 74 (293)
.+|.|.+..++..++.++
T Consensus 10 i~G~G~s~~~A~~~~~~l 27 (131)
T PF01380_consen 10 IYGSGSSYGVAQYAALKL 27 (131)
T ss_dssp EEESTHHHHHHHHHHHHH
T ss_pred EEEcchHHHHHHHHHHHH
Confidence 355666666665555555
No 264
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=50.39 E-value=48 Score=29.03 Aligned_cols=68 Identities=16% Similarity=0.264 Sum_probs=48.6
Q ss_pred CCCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEe
Q 022717 76 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
.|+.+.....-+|+. ..|....++.++..-++ |+-++|+ +........+.++..++|+.+|++.+.++
T Consensus 123 ~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicE-----il~~dG~m~~~~~~~~fA~~~~l~~isi~ 193 (199)
T TIGR00506 123 RPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICE-----MMNDDGTMARKPELMEYAKKHNLKLISIE 193 (199)
T ss_pred CCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEE-----EeCCCCCccCHHHHHHHHHHcCCcEEEHH
Confidence 467777777777776 57888889999999998 7666665 21111223345678899999999998764
No 265
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=50.35 E-value=1.7e+02 Score=31.64 Aligned_cols=117 Identities=11% Similarity=0.006 Sum_probs=71.1
Q ss_pred ccccCccH---HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-cccccccCccCcc
Q 022717 56 STIATQLP---HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSD 131 (293)
Q Consensus 56 g~lG~~lp---~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~~~~~~~~~~ 131 (293)
|+-.+++- +|+|.|++.. +..-+++ ++.=+.|...-.+|-+..++..++++.+|...-+. ...... ....
T Consensus 566 GIAEqnmv~~~iAAGlA~a~~--G~g~iPf-~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG---~tHq 639 (889)
T TIGR03186 566 GISEAGAISSWIAAATSYSVH--DLPMLPF-YIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEG---LQHQ 639 (889)
T ss_pred chhhHHHHHHHHHHHHhhhhc--CCCceEE-EEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCc---cccc
Confidence 44444443 4777777642 2221233 23334554445678888888888999998887776 333211 1223
Q ss_pred cHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhcc--CCcEEEEEE
Q 022717 132 GAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGE--GRPILIEAL 178 (293)
Q Consensus 132 d~~~~a~a~G~~~~~V-dG~D~~~v~~a~~~a~~~~r~~--~gP~lIe~~ 178 (293)
++.+.+-.-.+|.+.| +--|..++..+++.+++++-.. ++|+.|-+.
T Consensus 640 ~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~ 689 (889)
T TIGR03186 640 DGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVT 689 (889)
T ss_pred chHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 4455555556666664 6678899999999888855554 478877654
No 266
>PRK13685 hypothetical protein; Provisional
Probab=50.28 E-value=2e+02 Score=26.73 Aligned_cols=82 Identities=7% Similarity=0.027 Sum_probs=47.3
Q ss_pred ceEEEEeCcccccchH-------HHHHHHHHhhcCCCEEEEEEeCCcc-ccccccC---ccCcccHHHHHhhcCceEEEE
Q 022717 79 ACAVTYFGDGGTSEGD-------FHAALNFSAVTEAPVIFICRNNGWA-ISTPISD---QFRSDGAVVKGRAYGVRSIRV 147 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~-------~~Eal~~A~~~~lpvi~vi~NN~~~-~~~~~~~---~~~~~d~~~~a~a~G~~~~~V 147 (293)
..+|+++-||.-..|. ..++.+.+...+.+|-.|-.-+..+ +....+. ......+.++|+.-|...+.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4678899999876442 2356677777788755543332221 1100000 012234677888888888887
Q ss_pred eCCCHHHHHHHHHHH
Q 022717 148 DGNDALAIYSAVHAA 162 (293)
Q Consensus 148 dG~D~~~v~~a~~~a 162 (293)
+ |..++.+++++.
T Consensus 274 ~--~~~~L~~if~~I 286 (326)
T PRK13685 274 A--SLEELRAVYATL 286 (326)
T ss_pred C--CHHHHHHHHHHH
Confidence 5 666666655553
No 267
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=49.92 E-value=1.3e+02 Score=27.22 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=55.8
Q ss_pred HHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhh-cCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEE
Q 022717 69 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV-TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV 147 (293)
Q Consensus 69 A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~-~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V 147 (293)
.+|..+...+...+.+..|-.+..|.+ +-+..+.. -++||+. -| | .++ +.-...+..+|...+.+
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~~-~~l~~v~~~v~iPvl~--kd--f--i~~-------~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGSL-EYLRAARAAVSLPVLR--KD--F--IID-------PYQIYEARAAGADAILL 139 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCCH-HHHHHHHHhcCCCEEe--ee--e--cCC-------HHHHHHHHHcCCCEEEE
Confidence 455555556677888888888766653 33555443 4789873 21 2 111 11244567778888888
Q ss_pred eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 148 DGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 148 dG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
++.+... ..+++.+++++..+.-+++|+.+.
T Consensus 140 i~~~l~~--~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 140 IVAALDD--EQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred EeccCCH--HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 7655211 234444444445567777787664
No 268
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=49.29 E-value=1.6e+02 Score=27.04 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=36.2
Q ss_pred CCCceEEEEeCcccccchHHHHHHHHHh-hcCCC--EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeC
Q 022717 76 RKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 149 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~~~G~~~Eal~~A~-~~~lp--vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG 149 (293)
.+.+++|+..|.|+..+ +|--+. ...+| |+.|+.|+. +...+|+.+|+|++.++-
T Consensus 88 ~~~ri~vl~Sg~gsnl~-----al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 88 ERKRVVILVSKEDHCLG-----DLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVPV 145 (286)
T ss_pred cCcEEEEEEcCCCCCHH-----HHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEecc
Confidence 35677888888877643 344333 33344 777777753 455679999999998753
No 269
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=49.08 E-value=61 Score=28.73 Aligned_cols=68 Identities=18% Similarity=0.287 Sum_probs=48.4
Q ss_pred CCCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEe
Q 022717 76 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
.|+.+..+..-+|++ ..|....++.++..-++ |+-++|+ +........+.+++.++|+.+|++.+.++
T Consensus 133 ~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicE-----il~~dG~ma~~~~~~~fA~~~~l~~isi~ 203 (214)
T PRK01792 133 RPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICE-----ITNDDGTMARTPEIVEFAKKFGYAVVTIE 203 (214)
T ss_pred CCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEE-----EecCCCCccCHHHHHHHHHHcCCcEEEHH
Confidence 466777777778876 57888889999999998 7666655 11111223345678899999999997654
No 270
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=48.95 E-value=1.5e+02 Score=25.73 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=35.5
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCC--EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCC
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 150 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lp--vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~ 150 (293)
+++|.+.|+|+..+ .+.+++ ....++ |++||.|+.- ....++|+..|+|++.++-.
T Consensus 3 ki~vl~sg~gs~~~-~ll~~~---~~~~~~~~I~~vvs~~~~------------~~~~~~a~~~gIp~~~~~~~ 60 (200)
T PRK05647 3 RIVVLASGNGSNLQ-AIIDAC---AAGQLPAEIVAVISDRPD------------AYGLERAEAAGIPTFVLDHK 60 (200)
T ss_pred eEEEEEcCCChhHH-HHHHHH---HcCCCCcEEEEEEecCcc------------chHHHHHHHcCCCEEEECcc
Confidence 47889999999865 233332 222344 6666666531 12467889999999987643
No 271
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=48.80 E-value=66 Score=22.42 Aligned_cols=30 Identities=3% Similarity=-0.003 Sum_probs=24.7
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 022717 213 FRKWIESNGWWNGDIESELRSSVRKQILHA 242 (293)
Q Consensus 213 ~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a 242 (293)
+-...++.|.+|.++-+.|++.+.+..+..
T Consensus 23 ~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 23 IIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999988886654
No 272
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=48.74 E-value=67 Score=28.63 Aligned_cols=70 Identities=7% Similarity=0.011 Sum_probs=44.4
Q ss_pred CEEEEEEeCCccccccccC-ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 108 PVIFICRNNGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 108 pvi~vi~NN~~~~~~~~~~-~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+.+||+|..|.-..+... ......+.+..+.+|+.+....--+..++.+++++..++....+..+++-+
T Consensus 9 g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 9 GLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred cEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 3788888888853111110 001235677788899999888767888899988887553222345566655
No 273
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=47.61 E-value=39 Score=29.48 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=55.8
Q ss_pred ccCccHHHHHHHHHhhhc----------CCCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEEeCCccccccc
Q 022717 58 IATQLPHAVGAAYALKMD----------RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPI 124 (293)
Q Consensus 58 lG~~lp~A~G~A~a~k~~----------~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~ 124 (293)
.+.|++..-=+.-.+.+. .|+.+..+...+|++ ..|...-++.++..-++ |+-++|+ +....
T Consensus 90 ~~TGISa~DRa~Tir~La~~~~~~~df~~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~e-----il~~d 164 (194)
T PF00926_consen 90 TTTGISAADRARTIRALADPDAFPEDFVRPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICE-----ILDDD 164 (194)
T ss_dssp -SSSSSHHHHHHHHHHHHSTTGHGGGEEEEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEE-----BBETT
T ss_pred CCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEE-----EeCCC
Confidence 667777654433333332 255667777778776 56888889999999999 7666655 22222
Q ss_pred cCccCcccHHHHHhhcCceEEEEe
Q 022717 125 SDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 125 ~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
....+..+..++|+.+|++.+.++
T Consensus 165 G~~~~~~~~~~fA~~~~l~~vsi~ 188 (194)
T PF00926_consen 165 GDMARRDELEEFAKKHGLPIVSIE 188 (194)
T ss_dssp SSBHCHHHHHHHHHHTT-EEEEHH
T ss_pred CCcCCHHHHHHHHHHcCCcEEEHH
Confidence 233345678899999999999865
No 274
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=47.16 E-value=66 Score=32.28 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=50.3
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc-cccc--cccCccCcccHH---HHHhhcCceEEEEeCCCH
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AIST--PISDQFRSDGAV---VKGRAYGVRSIRVDGNDA 152 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~-~~~~--~~~~~~~~~d~~---~~a~a~G~~~~~VdG~D~ 152 (293)
...|..+|=|+++ .+. .+.-|=..++|||+|+--=.. ...+ -....+...||. +.++..-+....++ |.
T Consensus 68 ~a~VtTfgVGeLS--AlN-GIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~--~~ 142 (561)
T KOG1184|consen 68 GACVTTFGVGELS--ALN-GIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMIN--DI 142 (561)
T ss_pred eEEEEEeccchhh--hhc-ccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhc--CH
Confidence 4567778888886 111 122333458999998742100 0000 001123445664 33444444444454 44
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 153 LAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 153 ~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
++..+-+.+|++.+-...+|+-|.+.+.
T Consensus 143 e~A~~~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 143 EDAPEQIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeecc
Confidence 4444444444444445689999999873
No 275
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=46.63 E-value=2e+02 Score=29.40 Aligned_cols=95 Identities=22% Similarity=0.176 Sum_probs=59.9
Q ss_pred cccCccHHHHHHHHHhhhc-----CCCceEEEEeCcccccchH---------HHHHHHHHhhc---CCCEEEEEEeCCcc
Q 022717 57 TIATQLPHAVGAAYALKMD-----RKDACAVTYFGDGGTSEGD---------FHAALNFSAVT---EAPVIFICRNNGWA 119 (293)
Q Consensus 57 ~lG~~lp~A~G~A~a~k~~-----~~~~~vv~~~GDGa~~~G~---------~~Eal~~A~~~---~lpvi~vi~NN~~~ 119 (293)
.-|.+.|++-|+..|.++. +...++++++-||-.+.|. ..+++..|... ++++++|-.-+.
T Consensus 471 ~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~-- 548 (584)
T PRK13406 471 PGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR-- 548 (584)
T ss_pred CCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC--
Confidence 4667788888887776531 2236788899999987532 24455555443 345443321111
Q ss_pred ccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHH
Q 022717 120 ISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 162 (293)
Q Consensus 120 ~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a 162 (293)
......++|+..|..++.++--|...+..+++.+
T Consensus 549 ---------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 ---------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred ---------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1123567899999999999877777777766654
No 276
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=45.62 E-value=2.1e+02 Score=25.15 Aligned_cols=96 Identities=18% Similarity=0.045 Sum_probs=50.9
Q ss_pred CccHHHHHHHHHhhhcC---CCceEEEEeCcccccch-HHH-HHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHH
Q 022717 60 TQLPHAVGAAYALKMDR---KDACAVTYFGDGGTSEG-DFH-AALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV 134 (293)
Q Consensus 60 ~~lp~A~G~A~a~k~~~---~~~~vv~~~GDGa~~~G-~~~-Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~ 134 (293)
++++.|++.+...--.. -.++||-+.|||--++| ... .+-..+...+. + =|+..|....... ..++.
T Consensus 95 Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi--t----INgL~I~~~~~~~--~~~L~ 166 (205)
T PF06707_consen 95 TAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI--T----INGLAILDDDPFG--GADLD 166 (205)
T ss_pred chHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHCCe--E----EeeeEecCCCCCc--cccHH
Confidence 45555555554432222 35899999999999998 333 22223333332 1 1444443322111 11454
Q ss_pred HHHhhc--CceE-EEEeCCCHHHHHHHHHHHH
Q 022717 135 VKGRAY--GVRS-IRVDGNDALAIYSAVHAAR 163 (293)
Q Consensus 135 ~~a~a~--G~~~-~~VdG~D~~~v~~a~~~a~ 163 (293)
.+.+.. |-|+ +.+-..+..+..+|+++-+
T Consensus 167 ~yy~~~VIgGpgAFV~~a~~~~df~~AirrKL 198 (205)
T PF06707_consen 167 AYYRRCVIGGPGAFVETARGFEDFAEAIRRKL 198 (205)
T ss_pred HHHhhhcccCCCceEEEcCCHHHHHHHHHHHH
Confidence 444433 4454 4445667888888887654
No 277
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=45.21 E-value=93 Score=30.10 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=7.9
Q ss_pred ceEEEEeCccccc
Q 022717 79 ACAVTYFGDGGTS 91 (293)
Q Consensus 79 ~~vv~~~GDGa~~ 91 (293)
..++.+.|-|+..
T Consensus 56 ~~~~ll~gsGt~a 68 (383)
T COG0075 56 GDVVLLSGSGTLA 68 (383)
T ss_pred CcEEEEcCCcHHH
Confidence 4566666666653
No 278
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=44.35 E-value=1.1e+02 Score=23.70 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=11.1
Q ss_pred cHHHHHhhcCceEEEEeC
Q 022717 132 GAVVKGRAYGVRSIRVDG 149 (293)
Q Consensus 132 d~~~~a~a~G~~~~~VdG 149 (293)
+..+.++..|++++.+-+
T Consensus 65 ~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 65 NLLPHLKRRGAPIIAITG 82 (128)
T ss_pred HHHHHHHHCCCeEEEEeC
Confidence 345666666777766543
No 279
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.70 E-value=2.8e+02 Score=25.94 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcC-c
Q 022717 64 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG-V 142 (293)
Q Consensus 64 ~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G-~ 142 (293)
..++.-+..+.+.-.+.++.++|-|+-- |- .=++++|.+.. .+.+++=|.-+.. ...+..+..| +
T Consensus 23 s~~~~~l~~~~k~v~g~~vLITGgg~Gl-Gr-~ialefa~rg~--~~vl~Din~~~~~----------etv~~~~~~g~~ 88 (300)
T KOG1201|consen 23 SLIKLLLPKPLKSVSGEIVLITGGGSGL-GR-LIALEFAKRGA--KLVLWDINKQGNE----------ETVKEIRKIGEA 88 (300)
T ss_pred HHHHHhcccchhhccCCEEEEeCCCchH-HH-HHHHHHHHhCC--eEEEEeccccchH----------HHHHHHHhcCce
Confidence 3344444444444456788888876642 32 22577777766 5555554443321 1222233224 6
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 143 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 143 ~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
..+.||=.|.+++++..++..+ .-||+-|-+
T Consensus 89 ~~y~cdis~~eei~~~a~~Vk~----e~G~V~ILV 119 (300)
T KOG1201|consen 89 KAYTCDISDREEIYRLAKKVKK----EVGDVDILV 119 (300)
T ss_pred eEEEecCCCHHHHHHHHHHHHH----hcCCceEEE
Confidence 7888999999999988777665 345554444
No 280
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=42.73 E-value=91 Score=27.71 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=44.1
Q ss_pred CEEEEEEeCCccccccccC--ccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 108 PVIFICRNNGWAISTPISD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 108 pvi~vi~NN~~~~~~~~~~--~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.+.+||.|..|.-..+... ......+.+..+.+|+.+....--+..++.+++++..+ ....+..+++-+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~-~~~~~~d~~v~~ 80 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFAS-PDHSDSDSFVCV 80 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHh-ccCCCCCeeEEE
Confidence 4788888888854111111 01123567788899999988877788889999988765 122344555544
No 281
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=42.54 E-value=2.1e+02 Score=31.14 Aligned_cols=107 Identities=12% Similarity=0.157 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHhhhcCCCceEE--EEeCcccc-cchHHHHHHHH-HhhcCC--CEEEEEEeCCccccccccCccCcccHH
Q 022717 61 QLPHAVGAAYALKMDRKDACAV--TYFGDGGT-SEGDFHAALNF-SAVTEA--PVIFICRNNGWAISTPISDQFRSDGAV 134 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv--~~~GDGa~-~~G~~~Eal~~-A~~~~l--pvi~vi~NN~~~~~~~~~~~~~~~d~~ 134 (293)
.++.++|+|+. +++.++| +-+||=+. .|-.+.+=++. ++.|+. ++|+.+-. +|....+-....+...+.
T Consensus 659 ~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~-G~~g~g~~hsS~~~E~~l 733 (929)
T TIGR00239 659 VLGFEYGYATT----SPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPH-GYEGQGPEHSSGRLERFL 733 (929)
T ss_pred HHHHHHhHHhc----CCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecC-cCCCCCchhhccCHHHHH
Confidence 34455555554 5666544 44555443 12235555666 567764 66655544 455433322221222333
Q ss_pred HHHhhcCceEEEEeCCCHHHHHHHHH-HHHHHhhccCCcEEEEE
Q 022717 135 VKGRAYGVRSIRVDGNDALAIYSAVH-AAREMAIGEGRPILIEA 177 (293)
Q Consensus 135 ~~a~a~G~~~~~VdG~D~~~v~~a~~-~a~~~~r~~~gP~lIe~ 177 (293)
.++.--|+.++.. ..+.+.+-.++ .|+. ..+.|+++--
T Consensus 734 ql~~~~gl~Vv~p--stpad~~~lLrrqa~r---~~~~Pvi~~~ 772 (929)
T TIGR00239 734 QLAAEQNMQVCVP--TTPAQVFHILRRQALR---GMRRPLVVMS 772 (929)
T ss_pred HHhCCCCCEEEec--CCHHHHHHHHHHHHHh---CCCCCEEEec
Confidence 3333345555544 47888888888 4663 4478988744
No 282
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=41.19 E-value=74 Score=21.03 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 211 TRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 211 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
..|+..|.++|+ +++++++--+..++.+.+
T Consensus 14 ~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 14 LELRDELEEQGY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 458899999997 998888887877777654
No 283
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=41.18 E-value=1.9e+02 Score=26.34 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=37.0
Q ss_pred HHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 022717 133 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 180 (293)
Q Consensus 133 ~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~ 180 (293)
+...++.+|+........|+++..+.++++++ .+.|++|-+.+|
T Consensus 55 ~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l~----~g~pv~~~~D~~ 98 (317)
T PF14399_consen 55 EENLLERLGIKYEWREFSSPDEAWEELKEALD----AGRPVIVWVDMY 98 (317)
T ss_pred HHHHHHHCCceEEEEecCCHHHHHHHHHHHHh----CCCceEEEeccc
Confidence 35678889999998888899999999999987 467999999884
No 284
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=39.85 E-value=2.9e+02 Score=25.40 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=36.1
Q ss_pred CCceEEEEeCcccccchHHHHHHHHHhhcC-CC--EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeC
Q 022717 77 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 149 (293)
Q Consensus 77 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~-lp--vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG 149 (293)
+.+++|...|-|+..+ +|--+...+ +| ++.|+.||. +...+|+.+|+|++.++-
T Consensus 84 ~~ki~vl~Sg~g~nl~-----~l~~~~~~g~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 84 LKRVAILVSKEDHCLG-----DLLWRWYSGELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred CcEEEEEEcCCChhHH-----HHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCC
Confidence 4567888888877643 344444333 44 777877753 345578999999998874
No 285
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=39.50 E-value=1.8e+02 Score=24.82 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.1
Q ss_pred EEEEeecCCCCCCCCC
Q 022717 175 IEALTYRVGHHTTSDD 190 (293)
Q Consensus 175 Ie~~t~R~~gHs~~Dd 190 (293)
+++.+|...+|....+
T Consensus 178 ~~~~~y~ga~HgF~~~ 193 (218)
T PF01738_consen 178 VEVHVYPGAGHGFANP 193 (218)
T ss_dssp EEEEEETT--TTTTST
T ss_pred EEEEECCCCcccccCC
Confidence 6888999899987654
No 286
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=39.32 E-value=71 Score=29.77 Aligned_cols=37 Identities=24% Similarity=0.147 Sum_probs=24.6
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCCEEEE---EEeCCccc
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNGWAI 120 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v---i~NN~~~~ 120 (293)
...+++-|||++.. +..++..+++|+|-| |+||-.+.
T Consensus 93 d~Li~IGGdgs~~~-----a~~L~e~~~i~vigiPkTIDNDl~~t 132 (301)
T TIGR02482 93 EGLVVIGGDGSYTG-----AQKLYEEGGIPVIGLPGTIDNDIPGT 132 (301)
T ss_pred CEEEEeCCchHHHH-----HHHHHHhhCCCEEeecccccCCCcCc
Confidence 45778888988752 233444478898876 77776543
No 287
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=38.55 E-value=3.2e+02 Score=27.11 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=70.1
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccc-
Q 022717 12 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT- 90 (293)
Q Consensus 12 ~~l~~G~~~~~~~~~~~g~~~~~~~G~~~~~h~~~~~~~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~- 90 (293)
.++..|++++.+..-+..-. +..||.-..+... ...+--.++ .|.++=.++..-..-.+.+++|++|=|+=
T Consensus 300 ~~~~lG~~~e~i~~~l~~~~--~v~GRmE~v~~~~--~~v~VDyAH----nPd~le~~L~~~~~~~~g~li~VfG~gGDr 371 (475)
T COG0769 300 AALALGVDLEDILAGLETLK--PVPGRMELVNIGG--KLVIVDYAH----NPDGLEKALRAVRLHAAGRLIVVFGCGGDR 371 (475)
T ss_pred HHHHcCCCHHHHHHHHHhcC--CCCCcceEecCCC--CeEEEEecc----ChHHHHHHHHHHHhhcCCcEEEEECccCCC
Confidence 45559999999988774322 2346643333331 122111222 23333333322111122336666654443
Q ss_pred cchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceE-EEEeCCCHHHHHHHHHHHHHHhhcc
Q 022717 91 SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGE 169 (293)
Q Consensus 91 ~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~-~~VdG~D~~~v~~a~~~a~~~~r~~ 169 (293)
-.+-.+. |...+....++++|..+|--.-. +..-+.++..++.-+. +.+ ..+-.+|++.|++.+.
T Consensus 372 D~~kr~~-mg~ia~~~ad~vivt~dnpR~ed-------p~~i~~~i~~g~~~~~~~~~----~~dr~~AI~~ai~~a~-- 437 (475)
T COG0769 372 DKSKRPD-MGAIAEQLADIVIVTSDNPRSED-------PAVILADILAGIEAPEKYEI----IEDREEAIRKALDLAK-- 437 (475)
T ss_pred Ccccccc-hHHHHHhcCCcEEEcCCCCCCcC-------HHHHHHHHHhccCCccceec----chhHHHHHHHHHHhhc--
Confidence 2222222 45555555578888776643211 0011223333332221 121 2345778888888765
Q ss_pred CCcEEEEEEeecCCCCC
Q 022717 170 GRPILIEALTYRVGHHT 186 (293)
Q Consensus 170 ~gP~lIe~~t~R~~gHs 186 (293)
.+++++.+ ..||.
T Consensus 438 ~~D~vlia----gkGhe 450 (475)
T COG0769 438 EGDVVLIA----GKGHE 450 (475)
T ss_pred cCCEEEEe----eccch
Confidence 56666655 56764
No 288
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=38.37 E-value=38 Score=25.49 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHH
Q 022717 210 VTRFRKWIESNGWWNGDIESELRSSV 235 (293)
Q Consensus 210 i~~~~~~L~~~g~~~~~~~~~i~~~~ 235 (293)
+..+-.+|+++|++|+++.+.|+++-
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~ 41 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKA 41 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCC
Confidence 44577999999999999999998754
No 289
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=38.32 E-value=38 Score=23.17 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.2
Q ss_pred HHHHHHHCCCCCHHHHHHH
Q 022717 213 FRKWIESNGWWNGDIESEL 231 (293)
Q Consensus 213 ~~~~L~~~g~~~~~~~~~i 231 (293)
+++-++++|++|+++++++
T Consensus 28 vre~v~~~g~lt~ee~d~l 46 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDEL 46 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 5677889999999999876
No 290
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=37.89 E-value=53 Score=24.36 Aligned_cols=38 Identities=5% Similarity=-0.011 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q 022717 206 TQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 243 (293)
Q Consensus 206 ~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~ 243 (293)
.++-|..+-..|++.++++++|.+.|+++-....++|-
T Consensus 14 ~~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar 51 (83)
T cd08325 14 GKGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKAR 51 (83)
T ss_pred hHhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHH
Confidence 35677788899999999999999999886443444443
No 291
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=37.47 E-value=2.1e+02 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=22.8
Q ss_pred EEEeCcccc--cchHHHHHHHHHhhc---CCCEEEEEEeC
Q 022717 82 VTYFGDGGT--SEGDFHAALNFSAVT---EAPVIFICRNN 116 (293)
Q Consensus 82 v~~~GDGa~--~~G~~~Eal~~A~~~---~lpvi~vi~NN 116 (293)
|.|--||+. +.|.++-++.+|..+ +..++|++.+.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~ 41 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPL 41 (279)
T ss_pred EEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 345556665 567777778877765 23577777764
No 292
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=36.95 E-value=1.6e+02 Score=28.70 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=47.9
Q ss_pred HHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceE
Q 022717 65 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 144 (293)
Q Consensus 65 A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~ 144 (293)
.+.+.++....+ ..++.+..||-+.+ .-.++++.++.+++++-+++.+-. -...+..+|...
T Consensus 115 ~~~~~~~~~~g~-~~I~~ASSGnTgAs------~aaya~rag~~v~Vl~P~g~vs~~-----------k~~q~~~~ga~~ 176 (411)
T COG0498 115 TVLVSLAKELGA-KTILCASSGNTGAS------AAAYAARAGLKVFVLYPKGKVSPG-----------KLAQMLTLGAHV 176 (411)
T ss_pred HHHHHHHHHhcC-CEEEEeCCchHHHH------HHHHhccCCCeEEEEecCCCCCHH-----------HHHHHHhcCCEE
Confidence 344444443322 55666666765522 245788899998888877665321 122345567777
Q ss_pred EEEeCCCHHHHHHHHHHHHH
Q 022717 145 IRVDGNDALAIYSAVHAARE 164 (293)
Q Consensus 145 ~~VdG~D~~~v~~a~~~a~~ 164 (293)
+.|+| +.++..+.++++.+
T Consensus 177 i~v~G-~fDda~~~vk~~~~ 195 (411)
T COG0498 177 IAVDG-NFDDAQELVKEAAN 195 (411)
T ss_pred EEEcC-cHHHHHHHHHHHHh
Confidence 77877 45566666666654
No 293
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=36.59 E-value=56 Score=20.30 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 022717 208 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 241 (293)
Q Consensus 208 dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 241 (293)
||+..|-+.+-.--++|.+|..++-.++++-.+.
T Consensus 2 D~l~~Yl~ei~~~~LLt~eeE~~LA~~i~~g~~~ 35 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTAEEEIELARRIRKGDEA 35 (37)
T ss_dssp HHHHHHHHHHHHS-EETTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHh
Confidence 6788888888888999999988888888776443
No 294
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=36.43 E-value=94 Score=24.72 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=23.6
Q ss_pred CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC
Q 022717 77 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 116 (293)
Q Consensus 77 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN 116 (293)
++..++.+.++|...+ ...+.+..+...+.+++.|..+.
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 4556777777775432 24455666666677777665543
No 295
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=36.26 E-value=83 Score=27.99 Aligned_cols=68 Identities=12% Similarity=0.280 Sum_probs=46.8
Q ss_pred CCCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEe
Q 022717 76 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
.|+.+.....=+|+. ..|....++.++..-++ |+-++|+ +........+.+++.++|+.+|++.+.++
T Consensus 134 rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicE-----il~~dG~ma~~~~l~~fA~~h~l~~isi~ 204 (218)
T PRK00910 134 RPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCE-----LTNPDGTMAKTPEIIAFGKLHNMPVLTIE 204 (218)
T ss_pred CCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEEEEE-----EecCCCCcCCHHHHHHHHHHcCCcEEEHH
Confidence 356655556556665 57888888999999998 7666665 21111223345678899999999998765
No 296
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=36.25 E-value=1.7e+02 Score=27.50 Aligned_cols=109 Identities=20% Similarity=0.250 Sum_probs=63.1
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEe-CCCHHHHH
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD-GNDALAIY 156 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd-G~D~~~v~ 156 (293)
+.-+++.+| +.+...+...-..|++.++-.+++++|-- . .-..+.+ ..+.+-+|....-|| |+|+. +.
T Consensus 63 g~dTlvT~G--giQSNh~r~tAavA~~lGl~~v~ile~~~-~------~y~~ngn-~Ll~~l~G~~~~~~~~~~d~~-~~ 131 (323)
T COG2515 63 GADTLVTYG--GIQSNHVRQTAAVAAKLGLKCVLILENIE-A------NYLLNGN-LLLSKLMGAEVRAVDAGTDIG-IN 131 (323)
T ss_pred CCcEEEEec--ccchhHHHHHHHHHHhcCCcEEEEEeccc-c------ccccccc-hhhhhhcCceEEEecCCCChh-hc
Confidence 444666664 66666777777788889999999999743 0 0011122 234566888888886 56662 33
Q ss_pred HHHHHHHHHhh-ccCCcEEEEEEeecCCC-CCCCCCCCCC-CChHHHHHHH
Q 022717 157 SAVHAAREMAI-GEGRPILIEALTYRVGH-HTTSDDSTKY-RPVDEIEWWR 204 (293)
Q Consensus 157 ~a~~~a~~~~r-~~~gP~lIe~~t~R~~g-Hs~~Dd~~~Y-r~~~e~~~~~ 204 (293)
.-.+...+.++ ++++|.+|-. +| |+.+ .-.| +-..|+..|.
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp~-----GG~~~~g--~lGyv~~a~Ei~~Q~ 175 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIPE-----GGSSPLG--ALGYVRLALEIAEQA 175 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEecc-----CCcCccc--cccHHHHHHHHHHHH
Confidence 33333333333 4788888744 34 3322 1234 3446777765
No 297
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=36.16 E-value=3.1e+02 Score=24.65 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=23.6
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhh--------cCCCEEEEEEeC
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNN 116 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~--------~~lpvi~vi~NN 116 (293)
+...++++||-.-.+=.+.|++.+|.. .|-|||+||+.-
T Consensus 28 ~~~~iaVvg~~~~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~ 74 (234)
T PF06833_consen 28 DGRFIAVVGDANHGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVP 74 (234)
T ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 445666666655432235566666633 356999999853
No 298
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=35.13 E-value=99 Score=19.87 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022717 227 IESELRSSVRKQILHALQEAE 247 (293)
Q Consensus 227 ~~~~i~~~~~~~v~~a~~~a~ 247 (293)
+++.+++++-+++.+.+..++
T Consensus 4 dle~~KqEIL~EvrkEl~K~K 24 (40)
T PF08776_consen 4 DLERLKQEILEEVRKELQKVK 24 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444443
No 299
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=35.09 E-value=2e+02 Score=21.79 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHhhcCCCEEE--EEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHH
Q 022717 90 TSEGDFHAALNFSAVTEAPVIF--ICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 153 (293)
Q Consensus 90 ~~~G~~~Eal~~A~~~~lpvi~--vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~ 153 (293)
.+.-.+..+.++|..++.++.+ |+........... +.....+.+.++..+.+...+.+.|+.
T Consensus 11 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 74 (124)
T cd01987 11 NAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAE--RRRLAEALRLAEELGAEVVTLPGDDVA 74 (124)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHH--HHHHHHHHHHHHHcCCEEEEEeCCcHH
Confidence 3444566677778877777444 4332211110000 001123456677788888777666653
No 300
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=34.93 E-value=3.1e+02 Score=23.94 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=26.2
Q ss_pred HHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCC
Q 022717 101 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 150 (293)
Q Consensus 101 ~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~ 150 (293)
.|...++|+++++.++. ...-.+..+.+|..++.+++.
T Consensus 68 ~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 68 AAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC
Confidence 45567889888877653 112345678899999999875
No 301
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=34.52 E-value=81 Score=24.29 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=27.7
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 118 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~ 118 (293)
..+|+++.+-....|..+| +.+|...+.||+.+..+...
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 3555555543466677777 89999999999999887765
No 302
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=34.34 E-value=64 Score=31.02 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=47.9
Q ss_pred CCCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEe
Q 022717 76 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
.|+.+..+..=+|++ ..|....++.++..-++ |..+||+ +..+.....+.++...+|+.+|++.+.++
T Consensus 123 ~PGHvfpl~a~~ggvl~R~GhtEaavdL~~lAgl~p~avi~e-----i~~~dg~m~~~~~~~~fA~~h~l~~i~i~ 193 (369)
T PRK12485 123 QPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVE-----VMNDDGTMARRPDLEVFAAKHGIKIGTIA 193 (369)
T ss_pred CCCeeCeEEecCCCCCCCCChHHHHHHHHHHcCCCceEEEEE-----EecCCCCccChHHHHHHHHHcCCcEEEHH
Confidence 356666666667776 57888889999999998 8777776 21111222345678899999999997654
No 303
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=34.29 E-value=63 Score=27.33 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=30.0
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEE
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 114 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~ 114 (293)
.+++++++|-|+...+...+...+|...++|++.-..
T Consensus 27 AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 27 AKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred CCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 4578899999998767788888899999999775443
No 304
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=34.21 E-value=1.9e+02 Score=25.90 Aligned_cols=68 Identities=13% Similarity=0.233 Sum_probs=47.0
Q ss_pred CCCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEe
Q 022717 76 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
.|+.+.....=+|+. ..|....++.++..-++ |+-++|+ +........+.+++.++|+-+|++.+.++
T Consensus 138 rPGHVfPL~a~~gGvl~R~GHTEAavdLa~lAGl~P~~vicE-----il~~dG~ma~~~~l~~fA~~~~l~iisi~ 208 (230)
T PRK00014 138 SPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCE-----LMNADGTMMRGASLERYAAKEGLVALAID 208 (230)
T ss_pred CCCccceEEecCCCEecCCCccHHHHHHHHHcCCCceEEEEE-----EeCCCCCccCHHHHHHHHHHcCCcEEEHH
Confidence 356666666666766 57888888999999998 7666655 21111223445678899999999998654
No 305
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=34.13 E-value=61 Score=27.85 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=21.9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH
Q 022717 211 TRFRKWIESNGWWNGDIESELRSSVRK 237 (293)
Q Consensus 211 ~~~~~~L~~~g~~~~~~~~~i~~~~~~ 237 (293)
..++..|+++|+++.++++.+.+....
T Consensus 4 ~Ale~ll~eKGli~~~~id~~i~~~~~ 30 (185)
T TIGR01323 4 KALEQVLKSKGLIPEGAVDQLTSLYEN 30 (185)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 457889999999999998888765443
No 306
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=33.35 E-value=1.7e+02 Score=25.40 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=14.4
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEE
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 113 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi 113 (293)
+.+++++.+.|... .+.+++..|...+.|+|.|.
T Consensus 110 gDvli~iS~SG~s~--~v~~a~~~Ak~~G~~vI~IT 143 (196)
T PRK10886 110 GDVLLAISTRGNSR--DIVKAVEAAVTRDMTIVALT 143 (196)
T ss_pred CCEEEEEeCCCCCH--HHHHHHHHHHHCCCEEEEEe
Confidence 33444444444433 23344444444444444443
No 307
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=33.33 E-value=1e+02 Score=24.00 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=24.6
Q ss_pred CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC
Q 022717 77 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 116 (293)
Q Consensus 77 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN 116 (293)
++..++++.--|... ...+++..|...+.|+|.|..+.
T Consensus 47 ~~dl~I~iS~SG~t~--~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 47 EKSVVILASHSGNTK--ETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred CCcEEEEEeCCCCCh--HHHHHHHHHHHcCCeEEEEECCC
Confidence 455666666666665 45667777777777776666543
No 308
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=33.20 E-value=1.9e+02 Score=28.32 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=58.1
Q ss_pred EEEEeCccc--ccchHHHHHHHHHhhcCCCEEEEEEeCCc----cc-cccccCc---cC---------cccHHHHHhhcC
Q 022717 81 AVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNGW----AI-STPISDQ---FR---------SDGAVVKGRAYG 141 (293)
Q Consensus 81 vv~~~GDGa--~~~G~~~Eal~~A~~~~lpvi~vi~NN~~----~~-~~~~~~~---~~---------~~d~~~~a~a~G 141 (293)
+++|.+|+. .....+.+++..+...+.+++|-++|+.. .+ .+..... .. ......+|+.+|
T Consensus 144 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g 223 (430)
T COG0044 144 FKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATG 223 (430)
T ss_pred eEEEecCCcCcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhC
Confidence 477888885 56778899999999999999999999953 11 1111100 00 123346688888
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 142 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 142 ~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
.+...+.=...+++ +.++.|. ..+.++-.|+.-
T Consensus 224 ~~vhi~HiSt~~sv-~li~~ak----~~g~~vt~Evtp 256 (430)
T COG0044 224 ARVHICHISTKESV-ELIRAAK----AEGIRVTAEVTP 256 (430)
T ss_pred CcEEEEEcCCHHHH-HHHHHHh----hcCCceEEeecc
Confidence 65554433334333 3444444 356788888864
No 309
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.75 E-value=51 Score=24.59 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.6
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHH
Q 022717 211 TRFRKWIESNGWWNGDIESELRSS 234 (293)
Q Consensus 211 ~~~~~~L~~~g~~~~~~~~~i~~~ 234 (293)
..+..+|+++|++|.++.+.|+..
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~ 42 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAA 42 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcC
Confidence 447799999999999999998863
No 310
>PRK07328 histidinol-phosphatase; Provisional
Probab=32.29 E-value=2.4e+02 Score=25.30 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=37.7
Q ss_pred CccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 022717 126 DQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPIL 174 (293)
Q Consensus 126 ~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~gP~l 174 (293)
...++..+.++++.+|++... -|.|++.+|-..+.+|.+.+++.+=+.+
T Consensus 206 ~~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l~~~G~~~~ 255 (269)
T PRK07328 206 EIYPSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALALLKEVGYTET 255 (269)
T ss_pred CCCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHHHHHHcCCcEE
Confidence 345567889999999998543 4899999998888889888887664433
No 311
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=31.88 E-value=1.2e+02 Score=25.26 Aligned_cols=41 Identities=5% Similarity=0.153 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 022717 208 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK 248 (293)
Q Consensus 208 dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~ 248 (293)
+-+...++++.+.|-+|++|++.+.+-++..+.+..+....
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999988777665
No 312
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=31.60 E-value=1.8e+02 Score=30.02 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=37.7
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 022717 136 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 187 (293)
Q Consensus 136 ~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~ 187 (293)
++....+|++ |-.|+.++++.++.|++.-+..+-|+++-+.|. -.|+.
T Consensus 134 y~~~a~iPvL--eP~d~Qea~d~~~~afelSe~~~~pVilr~ttr--~~h~~ 181 (640)
T COG4231 134 YGKFALIPVL--EPSDPQEAYDYVKYAFELSEKSGLPVILRTTTR--VSHSR 181 (640)
T ss_pred HHHhcCceee--cCCChHHHHHHHHHHHHHHHHhCCCEEEEEEee--eeccc
Confidence 3555567766 445899999999999999999999999999883 34554
No 313
>PLN02522 ATP citrate (pro-S)-lyase
Probab=31.47 E-value=3.2e+02 Score=28.16 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=51.0
Q ss_pred CCceEEEEeCc-ccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCc------cCccc------HHHHHhhcCce
Q 022717 77 KDACAVTYFGD-GGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ------FRSDG------AVVKGRAYGVR 143 (293)
Q Consensus 77 ~~~~vv~~~GD-Ga~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~------~~~~d------~~~~a~a~G~~ 143 (293)
++-.+|++.|+ |...+-.|.|++.-+. .+-|||.++---.-... +.... ....+ .....+.+|+.
T Consensus 221 p~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~-~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~ 298 (608)
T PLN02522 221 PQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLF-KSEVQFGHAGAKSGGDMESAQAKNKALKDAGAI 298 (608)
T ss_pred CCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccC-ccccccccccccccCCCccHHHHHHHHHHCCCe
Confidence 56679999999 8887666666554444 56798877653211000 00000 11112 33445666664
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhc
Q 022717 144 SIRVDGNDALAIYSAVHAAREMAIG 168 (293)
Q Consensus 144 ~~~VdG~D~~~v~~a~~~a~~~~r~ 168 (293)
.. + +++++.++++++++...+
T Consensus 299 vv--~--s~~El~~~~~~~~~~~~~ 319 (608)
T PLN02522 299 VP--T--SFEALEAAIKETFEKLVE 319 (608)
T ss_pred Ee--C--CHHHHHHHHHHHHHHHHh
Confidence 44 4 899999999988876653
No 314
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=31.46 E-value=2.8e+02 Score=26.65 Aligned_cols=110 Identities=15% Similarity=0.032 Sum_probs=53.2
Q ss_pred CccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHh
Q 022717 60 TQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 138 (293)
Q Consensus 60 ~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~ 138 (293)
.+.+-|+|.-+..+..+..-.|++ -+.-- .||.-.-+ .-....++|+.+|++|--..+. +... .|. -
T Consensus 183 ~g~gtal~~i~~a~~~gk~f~V~v--~EsRP~~qG~rlta-~eL~~~GIpvtlI~Dsa~~~~m-~~~~----Vd~----V 250 (363)
T PRK05772 183 TGLGTALAPVKLAKALGMSVSVIA--PETRPWLQGSRLTV-YELMEEGIKVTLITDTAVGLVM-YKDM----VNN----V 250 (363)
T ss_pred cccccHHHHHHHHHHCCCeEEEEE--CCCCccchhHHHHH-HHHHHCCCCEEEEehhHHHHHH-hhcC----CCE----E
Confidence 345566776555554444434443 34332 45631111 1233468999988776543221 1100 111 1
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 022717 139 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 183 (293)
Q Consensus 139 a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~ 183 (293)
-.|...+..||. +..=.-+..-|+ -++..+.|+++-+-++.+.
T Consensus 251 ivGAD~I~~NG~-v~NKiGTy~lA~-~Ak~~~vPfyV~ap~~k~d 293 (363)
T PRK05772 251 MVGADRILRDGH-VFNKIGTFKEAV-IAHELGIPFYALAPTSTFD 293 (363)
T ss_pred EECccEEecCCC-EeehhhhHHHHH-HHHHhCCCEEEEccccccC
Confidence 246677777772 211111222222 1234689999988777653
No 315
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=30.87 E-value=1.1e+02 Score=26.51 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022717 207 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 245 (293)
Q Consensus 207 ~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~ 245 (293)
+|=+..++++|.+.| .++++.+++-.|+..++-++.+.
T Consensus 7 ~~y~~~l~~~L~~~~-~~e~~~e~~L~eil~~LleaQk~ 44 (206)
T PF06570_consen 7 QEYIFDLRKYLRSSG-VSEEEIEELLEEILPHLLEAQKK 44 (206)
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHhC
Confidence 344567899997777 69999999999999998887653
No 316
>PRK06988 putative formyltransferase; Provisional
Probab=30.77 E-value=2.5e+02 Score=26.05 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=35.0
Q ss_pred EEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEe
Q 022717 81 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 81 vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
-|+|+|.+.++. .+|..-...+..++.|+.+..-. .. ......+.++|+.+|++++..+
T Consensus 4 kIvf~Gs~~~a~----~~L~~L~~~~~~i~~Vvt~~d~~----~~-~~~~~~v~~~A~~~gip~~~~~ 62 (312)
T PRK06988 4 RAVVFAYHNVGV----RCLQVLLARGVDVALVVTHEDNP----TE-NIWFGSVAAVAAEHGIPVITPA 62 (312)
T ss_pred EEEEEeCcHHHH----HHHHHHHhCCCCEEEEEcCCCCC----cc-CcCCCHHHHHHHHcCCcEEccc
Confidence 478889888763 22333333456677666653211 01 1122467889999999998754
No 317
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.69 E-value=4.5e+02 Score=26.23 Aligned_cols=118 Identities=12% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCCEEEEEEeCCccccccccCccCcccHHHH-----HhhcCceEEEEeCCCHHHHHHHHHHHHHHhh-ccCCcEEEEEEe
Q 022717 106 EAPVIFICRNNGWAISTPISDQFRSDGAVVK-----GRAYGVRSIRVDGNDALAIYSAVHAAREMAI-GEGRPILIEALT 179 (293)
Q Consensus 106 ~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~-----a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r-~~~gP~lIe~~t 179 (293)
++|+++|=.+.+|...+ .|++.+ -+-..|..+.||.-...-+.-.++.|....- .-.-|.+-++
T Consensus 366 ~IPLtvVKSDGGftYdt--------sDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld~~~~RV~Hv-- 435 (656)
T KOG4426|consen 366 DIPLTVVKSDGGFTYDT--------SDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLDPTYPRVEHV-- 435 (656)
T ss_pred CcceEEEecCCCccccc--------chHHHHHHHHHHhhcCeEEEEeeCchhHHHHHHHHHHHHcCccCCCccceeee--
Confidence 45666666666655432 244332 2344688888875333333333333322100 0011222111
Q ss_pred ecCCCCCCCCCCCCCCCh--HHHHHHHhCCCcHHHHHHHHHHCC---CCCHHHHHHHHHHH
Q 022717 180 YRVGHHTTSDDSTKYRPV--DEIEWWRTTQDPVTRFRKWIESNG---WWNGDIESELRSSV 235 (293)
Q Consensus 180 ~R~~gHs~~Dd~~~Yr~~--~e~~~~~~~~dPi~~~~~~L~~~g---~~~~~~~~~i~~~~ 235 (293)
..|---+||...+|+. +-++....-..-++|-...|+++| .||++|+++..+.+
T Consensus 436 --gFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eav 494 (656)
T KOG4426|consen 436 --GFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAV 494 (656)
T ss_pred --eeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 1233345676666554 333322111234567778888887 79999888766543
No 318
>PRK07668 hypothetical protein; Validated
Probab=30.53 E-value=1.6e+02 Score=26.81 Aligned_cols=37 Identities=5% Similarity=0.133 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022717 208 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 245 (293)
Q Consensus 208 dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~ 245 (293)
|=+..++++|..+| .+++|.+++-.++..++.++.+.
T Consensus 8 efl~~L~~yL~~~g-lseeeieeiL~Ei~~hLlEgQk~ 44 (254)
T PRK07668 8 KFLDDTRVYLIAKG-IKEEDIESFLEDAELHLIEGEKD 44 (254)
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHc
Confidence 45677999999888 68999999999998888777654
No 319
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=30.44 E-value=1.7e+02 Score=23.01 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 022717 210 VTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK 248 (293)
Q Consensus 210 i~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~ 248 (293)
+..+-+.|+++|=+|.+|-+..-+++.+++..+-...++
T Consensus 26 ~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~ 64 (108)
T COG3937 26 VQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEE 64 (108)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455778899999999998888877777777666555444
No 320
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.05 E-value=1e+02 Score=25.85 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=51.4
Q ss_pred CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccC----c----cCcccHHHHHhhcCceEEEEe
Q 022717 77 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD----Q----FRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 77 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~----~----~~~~d~~~~a~a~G~~~~~Vd 148 (293)
....-+.++|-.....+ .-.+....++++.+...+|...+..-... . .......+.|+.+|++++.+.
T Consensus 75 ~~~~~Iavv~~~~~~~~----~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~ 150 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIPG----LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIE 150 (176)
T ss_dssp CCTSEEEEEEESS-SCC----HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS
T ss_pred hcCCcEEEEecccccHH----HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEE
Confidence 33455666666666543 23355667888777777765433211110 0 112234688999999999987
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 022717 149 GNDALAIYSAVHAAREMAI 167 (293)
Q Consensus 149 G~D~~~v~~a~~~a~~~~r 167 (293)
. ..++++.|+.+|+.-++
T Consensus 151 s-g~esi~~Al~eA~~i~~ 168 (176)
T PF06506_consen 151 S-GEESIRRALEEALRIAR 168 (176)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred e-cHHHHHHHHHHHHHHHH
Confidence 4 57889999999887554
No 321
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=30.04 E-value=25 Score=28.11 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=27.2
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCCEE
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI 110 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi 110 (293)
.+++++++|.|+...+...|...+|.++++|++
T Consensus 11 A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~ 43 (137)
T PF00205_consen 11 AKRPVILAGRGARRSGAAEELRELAEKLGIPVA 43 (137)
T ss_dssp -SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEE
T ss_pred CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEE
Confidence 456899999999977788888999999999984
No 322
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=29.66 E-value=2.5e+02 Score=21.97 Aligned_cols=82 Identities=9% Similarity=0.053 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHhhcCCCEE-EEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc
Q 022717 91 SEGDFHAALNFSAVTEAPVI-FICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 169 (293)
Q Consensus 91 ~~G~~~Eal~~A~~~~lpvi-~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~ 169 (293)
-+|.+.||++.|....-+++ ++-.++.-.-...-...+..+++.++... .+-.+.+|..+.+. + ++....+..
T Consensus 2 f~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~-~fv~w~~dv~~~eg-~----~la~~l~~~ 75 (116)
T cd02991 2 YQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT-RMLFWACSVAKPEG-Y----RVSQALRER 75 (116)
T ss_pred CcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc-CEEEEEEecCChHH-H----HHHHHhCCC
Confidence 36788899999987776644 44444321111111234455666666543 45555667666654 1 222233345
Q ss_pred CCcEEEEEE
Q 022717 170 GRPILIEAL 178 (293)
Q Consensus 170 ~gP~lIe~~ 178 (293)
.=|.++-+.
T Consensus 76 ~~P~~~~l~ 84 (116)
T cd02991 76 TYPFLAMIM 84 (116)
T ss_pred CCCEEEEEE
Confidence 779887764
No 323
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=29.64 E-value=62 Score=24.75 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHH
Q 022717 211 TRFRKWIESNGWWNGDIESELRSS 234 (293)
Q Consensus 211 ~~~~~~L~~~g~~~~~~~~~i~~~ 234 (293)
..+..+|+++|++|+++.+.|+.+
T Consensus 24 ~~v~~~L~~~gIlT~~~~e~I~a~ 47 (94)
T cd08327 24 GLVIQYLYQEGILTESHVEEIESQ 47 (94)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHcc
Confidence 346689999999999999999864
No 324
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=29.58 E-value=3.9e+02 Score=23.45 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=48.8
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcC-CC--EEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCC---H
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND---A 152 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~-lp--vi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D---~ 152 (293)
+++|.+.|-||-.| ++--|..-+ +| +..|+.|+.=+ .-.++|+.+|++...++-.+ -
T Consensus 2 ki~VlaSG~GSNlq-----aiida~~~~~~~a~i~~Visd~~~A------------~~lerA~~~gIpt~~~~~k~~~~r 64 (200)
T COG0299 2 KIAVLASGNGSNLQ-----AIIDAIKGGKLDAEIVAVISDKADA------------YALERAAKAGIPTVVLDRKEFPSR 64 (200)
T ss_pred eEEEEEeCCcccHH-----HHHHHHhcCCCCcEEEEEEeCCCCC------------HHHHHHHHcCCCEEEeccccCCCH
Confidence 46788888888754 344444432 34 67777765311 23468899999998876433 3
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEe
Q 022717 153 LAIYSAVHAAREMAIGEGRPILIEALT 179 (293)
Q Consensus 153 ~~v~~a~~~a~~~~r~~~gP~lIe~~t 179 (293)
++...++.++++ ..+|=+|.+--
T Consensus 65 ~~~d~~l~~~l~----~~~~dlvvLAG 87 (200)
T COG0299 65 EAFDRALVEALD----EYGPDLVVLAG 87 (200)
T ss_pred HHHHHHHHHHHH----hcCCCEEEEcc
Confidence 456666666665 45665655533
No 325
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=28.93 E-value=85 Score=27.97 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHCCCCCHHHHHHH
Q 022717 200 IEWWRTTQDPVTRFRKWIESNGWWNGDIESEL 231 (293)
Q Consensus 200 ~~~~~~~~dPi~~~~~~L~~~g~~~~~~~~~i 231 (293)
++.|- ..+.+.|+++|++|++|+++.
T Consensus 69 Ye~Wl------~ale~lLvekG~it~~EL~ar 94 (222)
T PF02211_consen 69 YERWL------AALEKLLVEKGVITAEELDAR 94 (222)
T ss_dssp HHHHH------HHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHH
Confidence 66775 568999999999999999886
No 326
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.78 E-value=1.2e+02 Score=23.46 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=20.4
Q ss_pred CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEE
Q 022717 77 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 113 (293)
Q Consensus 77 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi 113 (293)
++..++++.-.|... ...+++..|...+.|+|.|.
T Consensus 43 ~~dl~I~iS~SG~t~--e~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 43 RKTLVIAVSYSGNTE--ETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CCCEEEEEECCCCCH--HHHHHHHHHHHCCCEEEEEe
Confidence 445566666666654 35556666666666665555
No 327
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=28.70 E-value=1.7e+02 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=24.7
Q ss_pred CCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC
Q 022717 76 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 116 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN 116 (293)
.++.+++++..-|... .+.+++..|...+.|+|.|..++
T Consensus 110 ~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 110 REGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCC
Confidence 4556666666666654 45566777777777766666553
No 328
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=28.51 E-value=70 Score=23.65 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 022717 209 PVTRFRKWIESNGWWNGDIESELRSSV 235 (293)
Q Consensus 209 Pi~~~~~~L~~~g~~~~~~~~~i~~~~ 235 (293)
.+..+-..|.++|++|+++.+.|+++-
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~ 42 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEK 42 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 445566899999999999999998753
No 329
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=28.38 E-value=4.5e+02 Score=25.02 Aligned_cols=111 Identities=16% Similarity=0.074 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHhhhcCCCceEEEEeCcccc-cchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhh
Q 022717 61 QLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 139 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~-~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a 139 (293)
+.+-|+|.-.+.+..+..-.|++. +.-- .||.-. ...-....++|+.+|++|--..+.. ... .|. --
T Consensus 163 ~~gTal~~i~~A~~~gk~~~V~v~--EsRP~~qG~~l-ta~eL~~~GI~vtlI~Dsa~~~~M~-~~~----vd~----Vi 230 (344)
T PRK05720 163 GYGTALAPIYAAKEKGIDIHVYAD--ETRPRLQGARL-TAWELYQAGIDVTVITDNMAAHLMQ-TGK----IDA----VI 230 (344)
T ss_pred chhHHHHHHHHHHHcCCceEEEEc--CCCChhhhHHH-HHHHHHHCCCCEEEEcccHHHHHhc-ccC----CCE----EE
Confidence 445577776666555555445444 3332 455311 1122345689999888765332221 000 111 11
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCC
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 185 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gH 185 (293)
.|...+.-||. +..=.-+..-|+ -++..+.|+++-+-+|.+...
T Consensus 231 vGAd~I~~nG~-v~NkiGT~~lAl-~Ak~~~vPfyV~a~~~kfd~~ 274 (344)
T PRK05720 231 VGADRIAANGD-VANKIGTYQLAI-AAKYHGVPFYVAAPSSTIDLT 274 (344)
T ss_pred EcccEEecCCC-EeehhhHHHHHH-HHHHhCCCEEEeccccccCcC
Confidence 46667766762 211112222222 123468999999988877543
No 330
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=28.24 E-value=73 Score=27.58 Aligned_cols=26 Identities=4% Similarity=0.035 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH
Q 022717 211 TRFRKWIESNGWWNGDIESELRSSVR 236 (293)
Q Consensus 211 ~~~~~~L~~~g~~~~~~~~~i~~~~~ 236 (293)
..++..|+++|++|.++++.+.+.+.
T Consensus 10 ~al~~ll~ekg~~~~~~~~~~~~~~~ 35 (188)
T PF02979_consen 10 RALESLLIEKGLITPAEVDRIIETYE 35 (188)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 56889999999999999998876544
No 331
>PRK13938 phosphoheptose isomerase; Provisional
Probab=28.18 E-value=1.7e+02 Score=25.37 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=27.3
Q ss_pred cCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCC
Q 022717 75 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 117 (293)
Q Consensus 75 ~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~ 117 (293)
..++..++++..-|.+. .+.+++..|...+.|+|.|..|.+
T Consensus 111 ~~~~DllI~iS~SG~t~--~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 111 ARPGDTLFAISTSGNSM--SVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34566677777777665 466677777777777777766543
No 332
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=28.06 E-value=1.3e+02 Score=28.98 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=45.2
Q ss_pred CCCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEe
Q 022717 76 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
.|..+.....-+|+. ..|...-++.++..-+| |..++|+ +........+.++..++|+.+|++.+.++
T Consensus 123 ~PGHv~PL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~e-----i~~~~g~~~~~~~~~~fA~~h~L~~v~i~ 193 (367)
T PRK14019 123 QPGHIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICE-----IMKDDGTMARLPDLEEFAKEHGLKIGTIA 193 (367)
T ss_pred CCCCccceeecccCcccCCCchHHHHHHHHHcCCCceEEEEE-----EecCCCcccchHHHHHHHHHcCCcEEEHH
Confidence 345555555556666 35777778999999998 8777776 21111223345677889999999997654
No 333
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=27.95 E-value=1.6e+02 Score=23.74 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 151 DALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 151 D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
+++++...+++.++.+|+.+ +.+|-+
T Consensus 82 ~~~~~~~~l~~li~~~~~~~-~~vil~ 107 (177)
T cd01822 82 PPDQTRANLRQMIETAQARG-APVLLV 107 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCC-CeEEEE
Confidence 35677788888888887764 444433
No 334
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=27.76 E-value=1.1e+02 Score=27.51 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=24.8
Q ss_pred CCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC
Q 022717 76 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 116 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN 116 (293)
+++.+++.+...|.+. .+.+++..|...+.|+|.|..|.
T Consensus 117 ~~~DvvI~IS~SG~T~--~vi~al~~Ak~~Ga~~I~It~~~ 155 (257)
T cd05007 117 TERDVVIGIAASGRTP--YVLGALRYARARGALTIGIACNP 155 (257)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEECCC
Confidence 3555666666666665 46666777777777766666543
No 335
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=27.74 E-value=88 Score=25.43 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 022717 208 DPVTRFRKWIESNGWWNGDIESELRSSVRKQI 239 (293)
Q Consensus 208 dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v 239 (293)
-|+.+=..+|..+| +|++|+++.-+++....
T Consensus 21 sp~~~k~~FL~sKG-Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 21 SPLEKKIAFLESKG-LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp S-HHHHHHHHHHCT---HHHHHHHHHHHT--S
T ss_pred CCHHHHHHHHHcCC-CCHHHHHHHHHhcCCcc
Confidence 46667778999999 78988887776665553
No 336
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=27.72 E-value=1.9e+02 Score=25.65 Aligned_cols=66 Identities=14% Similarity=0.282 Sum_probs=45.4
Q ss_pred CCCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEE--eCCccccccccCccCcccHHHHHhhcCceEEEEe
Q 022717 76 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 148 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~--NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vd 148 (293)
.|..+.....=+|+. ..|...-++.++..-+| |+-++|+ |.. ....+.++..++|+.+|++.+.++
T Consensus 133 ~PGHv~pL~a~~ggvl~R~GhtEaavdLa~lAgl~P~avi~ei~~~~-------G~~~~~~~~~~fA~~~~l~~v~i~ 203 (217)
T PRK03353 133 RPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDD-------GTMARAPECIAFAKQHNMPVLTIE 203 (217)
T ss_pred CCCCccceeeccCCcccCCCchHHHHHHHHHcCCCceEEEEEeecCC-------CCcccHHHHHHHHHHcCCcEEEHH
Confidence 355555555556665 46777788999999998 8777765 321 122344678899999999997654
No 337
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=27.54 E-value=2.4e+02 Score=29.09 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=20.8
Q ss_pred ccCccHHHHHHHHHhhhcC-------CCceEEEEeCcccccc
Q 022717 58 IATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSE 92 (293)
Q Consensus 58 lG~~lp~A~G~A~a~k~~~-------~~~~vv~~~GDGa~~~ 92 (293)
.|++.|++.|+..|.++.. ..+.+|+++.||..+.
T Consensus 537 ~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~ 578 (633)
T TIGR02442 537 TGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANV 578 (633)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCC
Confidence 3555666666555544321 3456788888887754
No 338
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=27.54 E-value=1.2e+02 Score=24.83 Aligned_cols=39 Identities=10% Similarity=0.132 Sum_probs=25.3
Q ss_pred CCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeC
Q 022717 76 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 116 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN 116 (293)
+++..++++..-|.+. ...+++..|...+.|+|.|..|.
T Consensus 78 ~~~D~~i~iS~sG~t~--~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 78 QKGDVLLGISTSGNSK--NVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCC
Confidence 4556666666666665 45666777777777777666543
No 339
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=27.05 E-value=1.5e+02 Score=22.71 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=15.6
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEe
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 115 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~N 115 (293)
+..++++.-.|... ...+++..|...+.++|.|..|
T Consensus 47 ~d~~I~iS~sG~t~--e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 47 DTLVIAISQSGETA--DTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CcEEEEEeCCcCCH--HHHHHHHHHHHcCCeEEEEECC
Confidence 33444444444443 2334444444444444444443
No 340
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=26.98 E-value=92 Score=23.64 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=34.0
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhc--cCCcEEEEEEe
Q 022717 137 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIG--EGRPILIEALT 179 (293)
Q Consensus 137 a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~--~~gP~lIe~~t 179 (293)
+..+++..+.++..|+.++.+++.+-++.+-+ .+.|++|++.-
T Consensus 10 g~~~~l~vl~l~~~d~~~l~~~L~~ki~~ap~FF~~~pvvldl~~ 54 (99)
T PF05209_consen 10 GSNFTLLVLRLRSADLDELLQALDEKIAQAPDFFKNAPVVLDLSN 54 (99)
T ss_dssp EETTEEEEEEECSS-HHHHHHHHHHHHHHTHHHCTTTEEEEEEEE
T ss_pred cCceeEEEEEeCCCCHHHHHHHHHHHHHhChHhHcCCCeEEehhh
Confidence 34578889999999999999999887776665 37799999863
No 341
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=26.83 E-value=5.1e+02 Score=28.20 Aligned_cols=106 Identities=8% Similarity=0.029 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHhhhcCCCc--eEEEEeCcccc-cchHHHHHHHHH-hhcCC--CEEEEEEeCCccccccccCccCcccHH
Q 022717 61 QLPHAVGAAYALKMDRKDA--CAVTYFGDGGT-SEGDFHAALNFS-AVTEA--PVIFICRNNGWAISTPISDQFRSDGAV 134 (293)
Q Consensus 61 ~lp~A~G~A~a~k~~~~~~--~vv~~~GDGa~-~~G~~~Eal~~A-~~~~l--pvi~vi~NN~~~~~~~~~~~~~~~d~~ 134 (293)
.++.++|+|+. ++.. ++=.-+||=+. .|-.+.+-++.+ +.|+. ++++.+-.. |....+-. ++..+.
T Consensus 657 ~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G-~~g~g~~h---sS~~~E 728 (924)
T PRK09404 657 VLGFEYGYSTA----EPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHG-YEGQGPEH---SSARLE 728 (924)
T ss_pred HHHHHHHHHhc----CCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCCCChhh---hccCHH
Confidence 34456666554 4554 44456676554 223365656775 67764 766555544 54333321 122344
Q ss_pred HHHhhc---CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 135 VKGRAY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 135 ~~a~a~---G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
.+..-+ |+.++.. ..|.+.+-.|+.++- |....|+++--.
T Consensus 729 ~~l~~~~~~gl~Vv~p--stpad~~~lLr~q~~--r~~r~Pvv~~~p 771 (924)
T PRK09404 729 RFLQLCAEDNMQVCNP--TTPAQYFHLLRRQAL--RPFRKPLVVMTP 771 (924)
T ss_pred HHHHhCCCCCCEEEec--CCHHHHHHHHHHHHh--hCCCCCEEEecc
Confidence 444333 5655554 478888888887542 344589887443
No 342
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=26.58 E-value=1.5e+02 Score=27.89 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=23.9
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCCEEEE---EEeCCcccc
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNGWAIS 121 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v---i~NN~~~~~ 121 (293)
...+++-|||++.. +..+ +.+++|+|.| |+|+-++.+
T Consensus 94 d~Li~IGGdgs~~~-----a~~L-~e~~i~vigiPkTIDNDi~gtd 133 (317)
T cd00763 94 DALVVIGGDGSYMG-----AMRL-TEHGFPCVGLPGTIDNDIPGTD 133 (317)
T ss_pred CEEEEECCchHHHH-----HHHH-HHcCCCEEEecccccCCCCCCc
Confidence 45788889998852 1222 2247898876 788776543
No 343
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=26.57 E-value=89 Score=23.51 Aligned_cols=25 Identities=0% Similarity=0.056 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH
Q 022717 210 VTRFRKWIESNGWWNGDIESELRSS 234 (293)
Q Consensus 210 i~~~~~~L~~~g~~~~~~~~~i~~~ 234 (293)
+..+..+|+++|++|+++.+.|+..
T Consensus 22 ~~~v~~~L~~~gvlt~~~~~~I~~~ 46 (90)
T cd08332 22 LDELLIHLLQKDILTDSMAESIMAK 46 (90)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 3447799999999999999998764
No 344
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=26.53 E-value=4e+02 Score=23.77 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=66.4
Q ss_pred CcccccccccC-ccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCcccccccc---
Q 022717 50 NYFTVSSTIAT-QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS--- 125 (293)
Q Consensus 50 ~~~~~~g~lG~-~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~--- 125 (293)
+++..+..++. .+--.+|-.++.++.+.+.-+|+....|++-- +..+|...+.|++++=..+..+.....+
T Consensus 82 gy~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~l-----A~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~ 156 (238)
T PRK08558 82 GYVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPL-----AVAIASYFGADLVYAKKSKETGVEKFYEEYQ 156 (238)
T ss_pred CEEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHH-----HHHHHHHHCcCEEEEEecCCCCCcceEEEee
Confidence 44455555544 35557788899888765434555555555532 2557888899988765544333211111
Q ss_pred -CccC---cccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 022717 126 -DQFR---SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 177 (293)
Q Consensus 126 -~~~~---~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~ 177 (293)
.... .-.+.+.+-.-|-.++-|| |+.+--.++..+++.+++.+ ..++.+
T Consensus 157 s~s~~~~~~~~l~~~~l~~G~rVLIVD--Dvi~TG~Tl~~~~~ll~~~g-a~vvgv 209 (238)
T PRK08558 157 RLASGIEVTLYLPASALKKGDRVLIVD--DIIRSGETQRALLDLARQAG-ADVVGV 209 (238)
T ss_pred ccCCCceeEEEecHHHcCCcCEEEEEe--cccccCHHHHHHHHHHHHcC-CEEEEE
Confidence 0000 0001122223477888999 77776667777777666654 344433
No 345
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=26.48 E-value=4.1e+02 Score=24.90 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=32.8
Q ss_pred ccHHHHHHHH-HhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCc
Q 022717 61 QLPHAVGAAY-ALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 118 (293)
Q Consensus 61 ~lp~A~G~A~-a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~ 118 (293)
.=|+++|... +........-+++++|.|.... + ++.+|...+.-.|++++-+..
T Consensus 150 ~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGL--l--a~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 150 TEPLATAYHGHAERAAVRPGGTVVVVGAGPIGL--L--AIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred cChhhhhhhhhhhccCCCCCCEEEEECCCHHHH--H--HHHHHHHcCCceEEEeCCCHH
Confidence 3456666333 3332222222999999999963 2 266777788777777765543
No 346
>PRK13936 phosphoheptose isomerase; Provisional
Probab=26.35 E-value=1.3e+02 Score=25.76 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=16.8
Q ss_pred CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEE
Q 022717 77 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 114 (293)
Q Consensus 77 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~ 114 (293)
++.+++++...|... .+.+++..|...+.|+|.|..
T Consensus 111 ~~Dv~i~iS~sG~t~--~~~~~~~~ak~~g~~iI~IT~ 146 (197)
T PRK13936 111 PGDVLLAISTSGNSA--NVIQAIQAAHEREMHVVALTG 146 (197)
T ss_pred CCCEEEEEeCCCCcH--HHHHHHHHHHHCCCeEEEEEC
Confidence 344444444444443 244444455555555444444
No 347
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=26.13 E-value=74 Score=24.22 Aligned_cols=29 Identities=7% Similarity=-0.036 Sum_probs=23.0
Q ss_pred CcHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 022717 208 DPVTRFRKWIESNGWWNGDIESELRSSVR 236 (293)
Q Consensus 208 dPi~~~~~~L~~~g~~~~~~~~~i~~~~~ 236 (293)
.++..+-..|.++|++|+++.+.|+.+..
T Consensus 23 ~~v~~ilD~Ll~~~Vlt~ee~e~I~~~~t 51 (94)
T cd08329 23 TSVLPILDSLLSANVITEQEYDVIKQKTQ 51 (94)
T ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHcCCC
Confidence 34455668999999999999999986543
No 348
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=26.11 E-value=1.9e+02 Score=30.35 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=24.2
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCCEEEE
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 112 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v 112 (293)
.+.++=--||-.. ..+|++.|+..|++||||=
T Consensus 159 gVpvVPGTpgPit--t~~EA~eF~k~yG~PvI~K 190 (1176)
T KOG0369|consen 159 GVPVVPGTPGPIT--TVEEALEFVKEYGLPVIIK 190 (1176)
T ss_pred CCCccCCCCCCcc--cHHHHHHHHHhcCCcEEEe
Confidence 3445555577776 5889999999999998864
No 349
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=25.93 E-value=1.1e+02 Score=28.36 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=37.1
Q ss_pred cccccCccHHHHHHHHHhhhc---CCCceEEEEeCcccc--cchHHHHHHHHHhh---------cCCCEEEEEEeCC
Q 022717 55 SSTIATQLPHAVGAAYALKMD---RKDACAVTYFGDGGT--SEGDFHAALNFSAV---------TEAPVIFICRNNG 117 (293)
Q Consensus 55 ~g~lG~~lp~A~G~A~a~k~~---~~~~~vv~~~GDGa~--~~G~~~Eal~~A~~---------~~lpvi~vi~NN~ 117 (293)
..-+|++++.++|..+..... ..+-+.|||.--|+. ++|.+ .-|++|.. .+||.|.|+.|=-
T Consensus 131 f~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~l-SLMQMaktsaAl~~l~ea~lpyIsVLt~PT 206 (294)
T COG0777 131 FAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGIL-SLMQMAKTSAALKRLSEAGLPYISVLTDPT 206 (294)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHH-HHHHHHHHHHHHHHHHhcCCceEEEecCCC
Confidence 356778888888876654432 234456666655554 55543 33555433 3689888887743
No 350
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=25.86 E-value=1.7e+02 Score=24.43 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=38.7
Q ss_pred CceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCH
Q 022717 78 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 152 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~ 152 (293)
+.-+++.+-|+..-+-..+ -+......++|+|++++= + +.-.... -..|..++.+.+|+|++.+.+.+-
T Consensus 78 ~~D~ii~VvDa~~l~r~l~-l~~ql~e~g~P~vvvlN~--~--D~a~~~g-~~id~~~Ls~~Lg~pvi~~sa~~~ 146 (156)
T PF02421_consen 78 KPDLIIVVVDATNLERNLY-LTLQLLELGIPVVVVLNK--M--DEAERKG-IEIDAEKLSERLGVPVIPVSARTG 146 (156)
T ss_dssp SSSEEEEEEEGGGHHHHHH-HHHHHHHTTSSEEEEEET--H--HHHHHTT-EEE-HHHHHHHHTS-EEEEBTTTT
T ss_pred CCCEEEEECCCCCHHHHHH-HHHHHHHcCCCEEEEEeC--H--HHHHHcC-CEECHHHHHHHhCCCEEEEEeCCC
Confidence 3446777778876432222 222334567898888762 1 1111111 124677888999999999876443
No 351
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=25.80 E-value=1.4e+02 Score=20.06 Aligned_cols=27 Identities=7% Similarity=-0.103 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022717 221 GWWNGDIESELRSSVRKQILHALQEAE 247 (293)
Q Consensus 221 g~~~~~~~~~i~~~~~~~v~~a~~~a~ 247 (293)
+-.|+||++..++++...|..++..|-
T Consensus 7 ~qpS~eE~k~~e~~A~~Tvk~a~~~a~ 33 (49)
T PF10642_consen 7 PQPSEEEIKAAEAQANFTVKNAAAAAA 33 (49)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999988876553
No 352
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=25.77 E-value=8e+02 Score=25.81 Aligned_cols=196 Identities=18% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEE---EEEEeCCccccccccCccCcccHHHHHhhcCceE
Q 022717 68 AAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI---FICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 144 (293)
Q Consensus 68 ~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi---~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~ 144 (293)
..+|..+...+...+.+.-|.-+-.|.+.---.....-++||+ |||+ +.-...++.+|...
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~PvLrKDFIid----------------~~QI~ea~~~GADa 136 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPVLRKDFIVT----------------DYQIWEARAHGADL 136 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCEEeccccCC----------------HHHHHHHHHcCCCE
Q ss_pred EE--EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe-----------ecCCCCCCCCCCCCCCChHHHHHHHhCCCcHH
Q 022717 145 IR--VDGNDALAIYSAVHAAREMAIGEGRPILIEALT-----------YRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVT 211 (293)
Q Consensus 145 ~~--VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t-----------~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi~ 211 (293)
+- +.--+..++.+-++.|.. -+--+|||+.+ -+.-|-+.=|=.+.-.+.+-.+... ..=|
T Consensus 137 vLLI~~~L~~~~l~~l~~~a~~----lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~-~~ip-- 209 (695)
T PRK13802 137 VLLIVAALDDAQLKHLLDLAHE----LGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELA-ADLP-- 209 (695)
T ss_pred eehhHhhcCHHHHHHHHHHHHH----cCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHH-hhCC--
Q ss_pred HHHHHHHHCCCCCHHHHHHHHH-------------------HHHHHHHHHHHHHHhCCCCCcccccccccCC-----CCc
Q 022717 212 RFRKWIESNGWWNGDIESELRS-------------------SVRKQILHALQEAEKAEKPPISDLFTDVYDV-----SPS 267 (293)
Q Consensus 212 ~~~~~L~~~g~~~~~~~~~i~~-------------------~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~-----~~~ 267 (293)
.=.-.+-+.|+-|.+++..+.+ +.-+++..+-..++++..||+.+--..-|.. .|.
T Consensus 210 ~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~pe 289 (695)
T PRK13802 210 DDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKAGARVKASETTPLSEHQGPYWGQFGGRYVPE 289 (695)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhccccccccCCCCcccCCCCCcCCcCCEeCCH
Q ss_pred cHHHHHHHHHHHHHhCCCC
Q 022717 268 NLREQEHSLRETIKKHPQD 286 (293)
Q Consensus 268 ~~~~~~~~~~~~~~~~p~~ 286 (293)
.+...+++|.+.+.+..+|
T Consensus 290 ~l~~~~~~l~~~~~~~~~~ 308 (695)
T PRK13802 290 ALITALDELERVYTQAKAD 308 (695)
T ss_pred HHHHHHHHHHHHHHHHhcC
No 353
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=25.74 E-value=1.1e+02 Score=23.67 Aligned_cols=55 Identities=13% Similarity=0.229 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccccccccCCCCccHHHHHHHHHHHHHhCCCCCC
Q 022717 229 SELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 288 (293)
Q Consensus 229 ~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~~~~ 288 (293)
....+++++.+.+++. ..|....-+..+.....-...++.+++.++...+|.+++
T Consensus 46 ~~~~~~~~~~~~~vi~-----~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~ 100 (113)
T PF02520_consen 46 QAQKEEVRKNVTAVIS-----NLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEEVD 100 (113)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHHHH
Confidence 3344444444444432 223344455666777777788999999999999998843
No 354
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=25.42 E-value=3e+02 Score=20.92 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=45.1
Q ss_pred chHHHHHHHHHhhcCCCEEEEEEeCCccccccc-cCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccC
Q 022717 92 EGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEG 170 (293)
Q Consensus 92 ~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~-~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~ 170 (293)
+|.+.|+++.|...+-|+++.+.++...-.... ...+..+++.+.... .+-.+.+|-++++.. .+.... ...+
T Consensus 3 ~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~--~~~~~~---~~~~ 76 (114)
T cd02958 3 QGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQ--RFLQSY---KVDK 76 (114)
T ss_pred cCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHH--HHHHHh---CccC
Confidence 467889999999999997766665554222111 223445556555543 344555665554321 122222 2346
Q ss_pred CcEEEEEE
Q 022717 171 RPILIEAL 178 (293)
Q Consensus 171 gP~lIe~~ 178 (293)
-|+++-+.
T Consensus 77 ~P~~~~i~ 84 (114)
T cd02958 77 YPHIAIID 84 (114)
T ss_pred CCeEEEEe
Confidence 78887774
No 355
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=25.41 E-value=2.7e+02 Score=20.47 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=27.7
Q ss_pred EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 146 RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 146 ~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
++.| |..+|.+++++++.++.+...=+++++..-+.
T Consensus 42 ~l~G-~~~~Vf~~l~~~~~~a~~~~~H~v~~~T~S~~ 77 (81)
T PF07615_consen 42 QLRG-DEEDVFDALEAAFERAAEEGPHVVMVVTISNG 77 (81)
T ss_dssp EEEC-BHHHHHHHHHHHHHHHHCCSSSEEEEEEEEES
T ss_pred EEEC-CHHHHHHHHHHHHHHHhccCCeEEEEEEEECC
Confidence 3567 78999999999999988765448888776543
No 356
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=25.20 E-value=1.2e+02 Score=22.65 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc
Q 022717 215 KWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDV 261 (293)
Q Consensus 215 ~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v 261 (293)
..|...|++|.+|+.+|-++-+. ++.......+.+++.+.++
T Consensus 9 e~l~~~~lFt~~EI~~IvkkR~~-----fEy~L~rr~~~~~Dfl~YI 50 (83)
T PF08640_consen 9 EDLERKGLFTKEEIREIVKKRRD-----FEYKLQRRGKKKSDFLRYI 50 (83)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH-----HHHHHHcCCCCHHHHHHHH
Confidence 34788999999999888776443 4566667777777777665
No 357
>PLN02569 threonine synthase
Probab=25.09 E-value=3.3e+02 Score=27.13 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=27.3
Q ss_pred HHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 022717 101 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 161 (293)
Q Consensus 101 ~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~ 161 (293)
.|+..++++++++-.+.... .-....++||..++.|+| +.++..+.+++
T Consensus 205 yaa~~Gl~~~I~vP~~~~~~-----------~k~~qi~a~GA~Vi~v~g-~~d~a~~~a~e 253 (484)
T PLN02569 205 YCAAAGIPSIVFLPADKISI-----------AQLVQPIANGALVLSIDT-DFDGCMRLIRE 253 (484)
T ss_pred HHHhcCCeEEEEEcCCCCCH-----------HHHHHHHhcCCEEEEECC-CHHHHHHHHHH
Confidence 46778999777776543221 122335567777777776 34444333333
No 358
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=24.92 E-value=67 Score=23.07 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=12.6
Q ss_pred HHHHHhhccCCcEEEEEE
Q 022717 161 AAREMAIGEGRPILIEAL 178 (293)
Q Consensus 161 ~a~~~~r~~~gP~lIe~~ 178 (293)
+|++.+++.++|++|.+.
T Consensus 8 ~al~~A~~~~kpvlv~f~ 25 (82)
T PF13899_consen 8 EALAEAKKEGKPVLVDFG 25 (82)
T ss_dssp HHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEE
Confidence 344444557999999993
No 359
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=24.71 E-value=2.3e+02 Score=21.67 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=20.0
Q ss_pred CceEEEEeCcccccch--HHHHHHHHHhhcCCCEEEE
Q 022717 78 DACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFI 112 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G--~~~Eal~~A~~~~lpvi~v 112 (293)
....+++++||....+ ...+.+..+...+..+.+|
T Consensus 101 ~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v 137 (161)
T cd00198 101 ARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTI 137 (161)
T ss_pred CceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEE
Confidence 4566777777776544 3455555555555554433
No 360
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=24.60 E-value=2e+02 Score=28.10 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=23.0
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhc--CCCEEEE---EEeCCccc
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFI---CRNNGWAI 120 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~--~lpvi~v---i~NN~~~~ 120 (293)
...+++-|||++.. .+.--..+... ++|||-| |+|+-++.
T Consensus 114 d~Li~IGGdgS~~~--a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~t 158 (403)
T PRK06555 114 DILHTIGGDDTNTT--AADLAAYLAENGYDLTVVGLPKTIDNDVVPI 158 (403)
T ss_pred CEEEEECChhHHHH--HHHHHHHHHHhCCCceEEEeeeeeeCCCCCc
Confidence 45788889999852 12111122223 5787776 77776543
No 361
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=24.58 E-value=5.2e+02 Score=23.26 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=44.9
Q ss_pred CceEEEEeCcccccch--HHHHHHHHHhhcCCCEEEEEEeCCc--cccccc-cCccCcccHHHHHhhcCceEEEEeCCCH
Q 022717 78 DACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFICRNNGW--AISTPI-SDQFRSDGAVVKGRAYGVRSIRVDGNDA 152 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G--~~~Eal~~A~~~~lpvi~vi~NN~~--~~~~~~-~~~~~~~d~~~~a~a~G~~~~~VdG~D~ 152 (293)
.+++++++.||.-..+ ...+.+..+...+++|..|-.-... ...... ........+.++|+.-|...+.++.++.
T Consensus 164 ~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~~~~~l 243 (296)
T TIGR03436 164 GRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYVNSNDL 243 (296)
T ss_pred CCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecccCccH
Confidence 5788999999976432 3555566665655554433221100 000000 0001123467788888888776655555
Q ss_pred HHHHHHHHHHHHHh
Q 022717 153 LAIYSAVHAAREMA 166 (293)
Q Consensus 153 ~~v~~a~~~a~~~~ 166 (293)
. .+++++.+.+
T Consensus 244 ~---~~f~~i~~~~ 254 (296)
T TIGR03436 244 D---GAFAQIAEEL 254 (296)
T ss_pred H---HHHHHHHHHH
Confidence 4 4455555443
No 362
>PLN03013 cysteine synthase
Probab=24.56 E-value=4.5e+02 Score=25.83 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=25.3
Q ss_pred HHhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCC
Q 022717 101 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 150 (293)
Q Consensus 101 ~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~ 150 (293)
.|...++++++|+-++- ...-.+..++||..++.|++.
T Consensus 193 ~a~~~G~~~~VvvP~~~------------s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 193 IAASRGYRLILTMPASM------------SMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred HHHHcCCCEEEEECCCC------------cHHHHHHHHHcCCEEEEECCC
Confidence 45668899888877532 112345667888888888754
No 363
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=24.50 E-value=2.8e+02 Score=25.11 Aligned_cols=76 Identities=24% Similarity=0.245 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhcC-CC-EEE-EEEeCCccccc-c---cc-CccCcccHHHHHhhcCceEEEEeCC-CHHHHHHHHHHHHH
Q 022717 94 DFHAALNFSAVTE-AP-VIF-ICRNNGWAIST-P---IS-DQFRSDGAVVKGRAYGVRSIRVDGN-DALAIYSAVHAARE 164 (293)
Q Consensus 94 ~~~Eal~~A~~~~-lp-vi~-vi~NN~~~~~~-~---~~-~~~~~~d~~~~a~a~G~~~~~VdG~-D~~~v~~a~~~a~~ 164 (293)
.+.|||.+|..-- .| ||- +|..+.-..+| . .. .-.+.+.+.+.+...|..++.|++. |+++ .++
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~-------~i~ 229 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEE-------LIS 229 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHH-------HHH
Confidence 6889999997654 57 664 55544322221 1 11 1223456667777889999999985 4433 444
Q ss_pred HhhccCCcEEEEEE
Q 022717 165 MAIGEGRPILIEAL 178 (293)
Q Consensus 165 ~~r~~~gP~lIe~~ 178 (293)
++. +.|+||...
T Consensus 230 yLE--~~pVLI~~~ 241 (242)
T PRK01322 230 YLE--NKPVLIVYE 241 (242)
T ss_pred HHh--cCcEEEEec
Confidence 433 689999763
No 364
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=24.46 E-value=2.7e+02 Score=24.49 Aligned_cols=76 Identities=28% Similarity=0.293 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCC-C-EEE-EEEeCCcccc-cccc----CccCcccHHHHHhhcCceEEEEeCC-CHHHHHHHHHHHHHH
Q 022717 95 FHAALNFSAVTEA-P-VIF-ICRNNGWAIS-TPIS----DQFRSDGAVVKGRAYGVRSIRVDGN-DALAIYSAVHAAREM 165 (293)
Q Consensus 95 ~~Eal~~A~~~~l-p-vi~-vi~NN~~~~~-~~~~----~~~~~~d~~~~a~a~G~~~~~VdG~-D~~~v~~a~~~a~~~ 165 (293)
.-+||..|+.-++ | |+- +|..+.-... +... ...+..++.....-+|..++.||+. |+..... .+
T Consensus 154 ~~dAlAiaskv~~hp~VvaELC~SDd~dY~TGYvagkkiGY~Rit~lKe~gt~~GgRVfFVd~~~dln~yI~----~L-- 227 (239)
T COG1424 154 TVDALAIASKVNAHPGVVAELCWSDDPDYTTGYVAGKKIGYHRITDLKEVGTRYGGRVFFVDDCIDLNHYIS----FL-- 227 (239)
T ss_pred HHHHHHHHHhhccCcceeEEEeecCCCcceeeeeecceeeeEEeecccccCCccCcEEEEEcCcccHHHHHH----HH--
Confidence 4578888888876 6 553 5554442221 1111 1123346677788899999999864 6555433 23
Q ss_pred hhccCCcEEEEEEe
Q 022717 166 AIGEGRPILIEALT 179 (293)
Q Consensus 166 ~r~~~gP~lIe~~t 179 (293)
.++|.+|+..|
T Consensus 228 ---e~kp~lIe~e~ 238 (239)
T COG1424 228 ---ESKPKLIEYET 238 (239)
T ss_pred ---hcCCEEEEEec
Confidence 36899998754
No 365
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.46 E-value=1.1e+02 Score=21.78 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 022717 208 DPVTRFRKWIESNGWWNGDIESELRSSV 235 (293)
Q Consensus 208 dPi~~~~~~L~~~g~~~~~~~~~i~~~~ 235 (293)
.++..+-.+|.++|++|.++.+.|....
T Consensus 13 ~~~~~il~~L~~~~vlt~~e~~~i~~~~ 40 (80)
T cd01671 13 LDVEDVLDHLLSDGVLTEEEYEKIRSES 40 (80)
T ss_pred ccHHHHHHHHHHcCCCCHHHHHHHHcCC
Confidence 3556677899999999999999887653
No 366
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=24.42 E-value=2.9e+02 Score=24.20 Aligned_cols=45 Identities=22% Similarity=0.202 Sum_probs=32.7
Q ss_pred HHHHHhhcCceEEEEe-----CCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 022717 133 AVVKGRAYGVRSIRVD-----GNDALAIYSAVHAAREMAIGEGRPILIEAL 178 (293)
Q Consensus 133 ~~~~a~a~G~~~~~Vd-----G~D~~~v~~a~~~a~~~~r~~~gP~lIe~~ 178 (293)
..+.|+.+|+|..+.| ..|..++.+.++++...+|+ +|.++....
T Consensus 133 a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~-~G~aI~Igh 182 (213)
T PF04748_consen 133 APQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARK-QGSAIAIGH 182 (213)
T ss_dssp HHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhh-cCcEEEEEc
Confidence 4577999999988754 47888999999999999997 666766554
No 367
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=24.20 E-value=2.9e+02 Score=20.21 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=21.0
Q ss_pred HHHHHhhhcC--CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEE
Q 022717 67 GAAYALKMDR--KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 113 (293)
Q Consensus 67 G~A~a~k~~~--~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi 113 (293)
-++++.++.. ....+++..|+. +. ....+-.+|+..+.||+++=
T Consensus 12 s~~va~~~~~~~~~~~v~ia~g~~-~~--Dalsa~~~a~~~~~PIll~~ 57 (92)
T PF04122_consen 12 SAKVAKKFYPDNKSDKVYIASGDN-FA--DALSASPLAAKNNAPILLVN 57 (92)
T ss_pred HHHHHHHhcccCCCCEEEEEeCcc-hh--hhhhhHHHHHhcCCeEEEEC
Confidence 3444444322 334455555654 21 22233455666666766654
No 368
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=24.13 E-value=1e+02 Score=26.25 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=28.8
Q ss_pred CceEEEEeCccccc-chHHHHHHHHHhhcCCCEEEEEE
Q 022717 78 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICR 114 (293)
Q Consensus 78 ~~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lpvi~vi~ 114 (293)
-++.++++|.|... .....+...+|..+++|++.=..
T Consensus 34 AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 34 AKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 45688999999987 65677788899999999775443
No 369
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=24.13 E-value=3.2e+02 Score=23.84 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHHHHHHhh-cCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHH
Q 022717 95 FHAALNFSAV-TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREM 165 (293)
Q Consensus 95 ~~Eal~~A~~-~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~~v~~a~~~a~~~ 165 (293)
..|++-.+.. ...|+|.++.++ .+...+.+...|+.++-|+|-|+.-|...+.-|..+
T Consensus 65 ~~e~~~~~~~~~~~piv~lt~~s-------------~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~sr 123 (194)
T COG3707 65 IIEALLLASENVARPIVALTAYS-------------DPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSR 123 (194)
T ss_pred HHHHHHHhhcCCCCCEEEEEccC-------------ChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHH
Confidence 4455555544 234677666642 345678899999999999999999999998888753
No 370
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=23.89 E-value=85 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH
Q 022717 211 TRFRKWIESNGWWNGDIESELRSSVR 236 (293)
Q Consensus 211 ~~~~~~L~~~g~~~~~~~~~i~~~~~ 236 (293)
.++-.+|.++|++|+++.++|..+..
T Consensus 19 ~~l~d~L~q~~VLt~~d~EeI~~~~t 44 (86)
T cd08785 19 SRLTPYLRQCKVLDEQDEEEVLSSPR 44 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCCCc
Confidence 45789999999999999999987544
No 371
>PRK06740 histidinol-phosphatase; Validated
Probab=23.77 E-value=4.2e+02 Score=24.89 Aligned_cols=45 Identities=11% Similarity=-0.107 Sum_probs=36.6
Q ss_pred CccCcccHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccC
Q 022717 126 DQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEG 170 (293)
Q Consensus 126 ~~~~~~d~~~~a~a~G~~~~~-VdG~D~~~v~~a~~~a~~~~r~~~ 170 (293)
...++..+.++++.+|++... -|.|++..|-..+.+|.+.+++.+
T Consensus 269 e~yP~~~il~~~~e~Gv~~tlgSDAH~p~~VG~~~~~a~~~l~~~G 314 (331)
T PRK06740 269 EMCPSPLFLQVLAKHEVPITLSSDAHYPNDLGKYVEENVKTLRNHG 314 (331)
T ss_pred CCCcCHHHHHHHHHCCCeEEEeeCCCCHHHHHhHHHHHHHHHHHcC
Confidence 344566788999999998654 589999999888888998888765
No 372
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=23.60 E-value=1.8e+02 Score=28.36 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=46.8
Q ss_pred CCceEEEEeCcccc--cchHHHHHHHHHhhcCC-CEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCCHH
Q 022717 77 KDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 153 (293)
Q Consensus 77 ~~~~vv~~~GDGa~--~~G~~~Eal~~A~~~~l-pvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~ 153 (293)
|..+.-...-+|+. ..|....++.++..-++ |.-+||+ +........+.++..++|+.+|++.+.++ |..
T Consensus 125 PGHv~Pl~a~~ggvl~R~GhtEaavdL~~lAgl~Paavi~e-----i~~~~G~~~~~~~~~~fA~~~~l~~v~i~--dli 197 (402)
T PRK09311 125 PGHVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVICE-----IVNEDGTMARVPELRVFADEHDLALITIA--DLI 197 (402)
T ss_pred CCcccceeeccCCCccCCChHHHHHHHHHHcCCCceEEEEE-----EecCCCcccchHHHHHHHHHcCCeEEEee--chH
Confidence 44444455556555 46777778999999998 8777766 21111223345678889999999998776 554
Q ss_pred H
Q 022717 154 A 154 (293)
Q Consensus 154 ~ 154 (293)
+
T Consensus 198 ~ 198 (402)
T PRK09311 198 A 198 (402)
T ss_pred H
Confidence 3
No 373
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=23.43 E-value=97 Score=31.13 Aligned_cols=12 Identities=17% Similarity=-0.061 Sum_probs=6.1
Q ss_pred CCEEEEEEeCCc
Q 022717 107 APVIFICRNNGW 118 (293)
Q Consensus 107 lpvi~vi~NN~~ 118 (293)
+|.|.+|.+..+
T Consensus 155 iP~Isvv~G~~~ 166 (512)
T TIGR01117 155 VPQISAIMGPCA 166 (512)
T ss_pred CcEEEEEecCCC
Confidence 455555555444
No 374
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=23.42 E-value=2.8e+02 Score=21.69 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=22.1
Q ss_pred CceEEEEeCcccccch-HHHHHHHHHhhcCCCEEEEEE
Q 022717 78 DACAVTYFGDGGTSEG-DFHAALNFSAVTEAPVIFICR 114 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G-~~~Eal~~A~~~~lpvi~vi~ 114 (293)
.+.+++++.||....+ ...+.+......+++++.|-.
T Consensus 103 ~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~ 140 (161)
T cd01450 103 VPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGV 140 (161)
T ss_pred CCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEec
Confidence 4567888888876543 245555555555666555533
No 375
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=23.34 E-value=4.1e+02 Score=21.64 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=39.5
Q ss_pred cCCCceEEEEeCcccccchHHH---HHHHHHh-hcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCC
Q 022717 75 DRKDACAVTYFGDGGTSEGDFH---AALNFSA-VTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 150 (293)
Q Consensus 75 ~~~~~~vv~~~GDGa~~~G~~~---Eal~~A~-~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~ 150 (293)
.+.+..++++-.+-..+..... +.+.... ..+.|+++|.+ ..-.. ...........++++.++++.+.+...
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgN--K~Dl~--~~~~v~~~~~~~~a~~~~~~~~e~Sa~ 147 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGN--KVDLE--SQRQVTTEEGRNLAREFNCPFFETSAA 147 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE--Chhhh--hcCccCHHHHHHHHHHhCCEEEEEecC
Confidence 3456666666554333211221 2222221 23568777663 32211 111112223456677889999887643
Q ss_pred CHHHHHHHHHHHH
Q 022717 151 DALAIYSAVHAAR 163 (293)
Q Consensus 151 D~~~v~~a~~~a~ 163 (293)
+-..|.+++...+
T Consensus 148 ~~~~v~~~f~~l~ 160 (172)
T cd04141 148 LRHYIDDAFHGLV 160 (172)
T ss_pred CCCCHHHHHHHHH
Confidence 3333444444444
No 376
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=23.33 E-value=2e+02 Score=27.49 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=24.3
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcCCCEEEE---EEeCCc
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNGW 118 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~v---i~NN~~ 118 (293)
.-.|++-||||.. -+.-++..+++|+|-| |+|+-.
T Consensus 96 d~LvvIGGDgS~~-----gA~~Lae~~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 96 DALVVIGGDGSYT-----GAALLAEEGGIPVVGVPKTIDNDIS 133 (347)
T ss_pred CEEEEECCCChHH-----HHHHHHHhcCCcEEecCCCccCCCc
Confidence 3467788999985 2466777888887766 555443
No 377
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=22.90 E-value=4.2e+02 Score=21.54 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=22.0
Q ss_pred CceEEEEeCcccccchH--HHHHHHHHhhcCCCEEEEEE
Q 022717 78 DACAVTYFGDGGTSEGD--FHAALNFSAVTEAPVIFICR 114 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~--~~Eal~~A~~~~lpvi~vi~ 114 (293)
.+.+|+++.||....|. ..+....+...+++|..|-.
T Consensus 102 ~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~i 140 (180)
T cd01467 102 KERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGV 140 (180)
T ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 34688888888766553 23445555556666554433
No 378
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=22.56 E-value=92 Score=24.52 Aligned_cols=36 Identities=8% Similarity=0.237 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022717 209 PVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 245 (293)
Q Consensus 209 Pi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~ 245 (293)
=+.-+.+. .++|++++++.++.+.|++..+-+..+.
T Consensus 44 qL~ELe~d-~~~G~l~~~e~~~~~~El~rrLL~d~~~ 79 (117)
T TIGR03142 44 RLAELERD-LAEGLLDEAEAEAARAELQRRLLADIPA 79 (117)
T ss_pred HHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHCccc
Confidence 33444444 4679999999999999999998776544
No 379
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=22.32 E-value=2.3e+02 Score=23.59 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=26.3
Q ss_pred cCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEE
Q 022717 75 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 114 (293)
Q Consensus 75 ~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~ 114 (293)
...|..++++-++-+.+ ....+.+..+..+++|+|++++
T Consensus 92 ~~~D~ailvVda~~g~~-~~~~~~l~~~~~~~~p~ivvlN 130 (188)
T PF00009_consen 92 RQADIAILVVDANDGIQ-PQTEEHLKILRELGIPIIVVLN 130 (188)
T ss_dssp TTSSEEEEEEETTTBST-HHHHHHHHHHHHTT-SEEEEEE
T ss_pred cccccceeeeecccccc-cccccccccccccccceEEeee
Confidence 34677777777764444 3577889999999999555544
No 380
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=22.28 E-value=1.2e+02 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=29.1
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCC
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 185 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gH 185 (293)
||++.-..+ |++.+.+++.+|.+. .+-++++...+++.++
T Consensus 15 ygc~~~~L~--d~~~l~~~l~~aa~~----~g~tiv~~~~h~F~p~ 54 (123)
T PRK01706 15 WGVDFSLLD--DMYFLEHHLVEAADL----SGAHVLNVSTKEFDPQ 54 (123)
T ss_pred eCCChHHcC--CHHHHHHHHHHHHHH----cCCeEEEEEEEEcCCC
Confidence 444333333 888999999998874 5678899999888654
No 381
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=22.27 E-value=5.7e+02 Score=23.72 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=25.0
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 140 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 140 ~G~~~~~VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
.|...+.-||. +..-.-+..-|+ .++..+.|+++-+-+|++....
T Consensus 194 vGAd~v~~nG~-v~nkiGT~~~A~-~Ak~~~vPv~V~a~~~K~~~~~ 238 (310)
T PRK08535 194 VGADAITANGA-VINKIGTSQIAL-AAHEARVPFMVAAETYKFSPKT 238 (310)
T ss_pred ECccEEecCCC-EEeHHhHHHHHH-HHHHhCCCEEEecccceecCCC
Confidence 36666666762 111111222222 2234689999999999886543
No 382
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=22.09 E-value=2.1e+02 Score=24.63 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=45.8
Q ss_pred EEEEEeCCccccccccCc-cCcccHHHHHhhcCceEEE--EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 022717 110 IFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIR--VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 186 (293)
Q Consensus 110 i~vi~NN~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~--VdG~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs 186 (293)
-+||-||.|+-..+.... .....+.+..+.+|++... .+--...++..++++...... ...+++-. +.||.
T Consensus 3 AliIg~~~y~~~~~L~~~~~D~~~~~~~L~~~gf~~~~~l~~~~t~~~i~~~l~~l~~~~~--~~D~~~~y----fsGHG 76 (248)
T PF00656_consen 3 ALIIGVNYYQNPPPLPGAVNDAEAMAEALEKLGFDVENILIDNATRANILKALRELLQRAQ--PGDSVVFY----FSGHG 76 (248)
T ss_dssp EEEEEESSTSSTCHCTTHHHHHHHHHHHHHHTTEEEEEEEEESSSHHHHHHHHHHHHTSGG--TCSEEEEE----EESEE
T ss_pred EEEEEeeCCCCCCCCCCHHHHHHHHHHHHHHcCCceeeccccchHHHHHHHHHhhhhccCC--CCCeeEEE----Eeccc
Confidence 468888998765222111 1123455666888998888 666677888888888876544 33454443 45776
Q ss_pred CC
Q 022717 187 TS 188 (293)
Q Consensus 187 ~~ 188 (293)
..
T Consensus 77 ~~ 78 (248)
T PF00656_consen 77 IQ 78 (248)
T ss_dssp ET
T ss_pred cc
Confidence 54
No 383
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=22.03 E-value=94 Score=31.17 Aligned_cols=124 Identities=16% Similarity=0.190 Sum_probs=70.2
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccC---
Q 022717 50 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD--- 126 (293)
Q Consensus 50 ~~~~~~g~lG~~lp~A~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~--- 126 (293)
-|+..+||-+...-=|=|+++ .|-.++++-.|-+++. ...||++.|...+.|+|+.++- |..+...
T Consensus 58 tFiDTPGHeAFt~mRaRGa~v------tDIaILVVa~dDGv~p-QTiEAI~hak~a~vP~iVAiNK----iDk~~~np~~ 126 (509)
T COG0532 58 TFIDTPGHEAFTAMRARGASV------TDIAILVVAADDGVMP-QTIEAINHAKAAGVPIVVAINK----IDKPEANPDK 126 (509)
T ss_pred EEEcCCcHHHHHHHHhcCCcc------ccEEEEEEEccCCcch-hHHHHHHHHHHCCCCEEEEEec----ccCCCCCHHH
Confidence 355566776654444444332 3667888889888875 6789999999999998876652 2222100
Q ss_pred ---ccCcccHHHHHhhcCceEEEE-----eCCCHHHHHHHHHH---HHHHhhccCC---cEEEEEEeecCCCCC
Q 022717 127 ---QFRSDGAVVKGRAYGVRSIRV-----DGNDALAIYSAVHA---AREMAIGEGR---PILIEALTYRVGHHT 186 (293)
Q Consensus 127 ---~~~~~d~~~~a~a~G~~~~~V-----dG~D~~~v~~a~~~---a~~~~r~~~g---P~lIe~~t~R~~gHs 186 (293)
+.....+ .++.||-.+..| .|..+.++...+.. ..+.-..-++ -++||+...+..|+.
T Consensus 127 v~~el~~~gl--~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~v 198 (509)
T COG0532 127 VKQELQEYGL--VPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPV 198 (509)
T ss_pred HHHHHHHcCC--CHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCce
Confidence 0000011 144555444443 35666666665542 2221111122 378999988877764
No 384
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=22.03 E-value=2.4e+02 Score=28.90 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=59.8
Q ss_pred CCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc---cC---ccCcccHHHHHhhcCce--EEEE
Q 022717 76 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SD---QFRSDGAVVKGRAYGVR--SIRV 147 (293)
Q Consensus 76 ~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~---~~---~~~~~d~~~~a~a~G~~--~~~V 147 (293)
..|-+|+++.+|-+.+. ...|++..|..-+.|+|+-|+- ++.|. +. ++...++. .+.+|-. ++.+
T Consensus 224 vtDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinK----iDkp~a~pekv~~eL~~~gi~--~E~~GGdVQvipi 296 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINK----IDKPGANPEKVKRELLSQGIV--VEDLGGDVQVIPI 296 (683)
T ss_pred cccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEec----cCCCCCCHHHHHHHHHHcCcc--HHHcCCceeEEEe
Confidence 36788999999999875 6789999999999998876653 22221 00 01111111 3445533 3333
Q ss_pred ---eCCCHHHHHHHHHHH---HHHhhccCCc---EEEEEEeecCCC
Q 022717 148 ---DGNDALAIYSAVHAA---REMAIGEGRP---ILIEALTYRVGH 184 (293)
Q Consensus 148 ---dG~D~~~v~~a~~~a---~~~~r~~~gP---~lIe~~t~R~~g 184 (293)
.|.+...+.+++-.- ++--..-++| ++||..+....|
T Consensus 297 SAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G 342 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRG 342 (683)
T ss_pred ecccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCcc
Confidence 478888888876432 2211112444 677777755433
No 385
>PLN02880 tyrosine decarboxylase
Probab=21.99 E-value=5.1e+02 Score=25.70 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=42.9
Q ss_pred HHHHHhhcCce-----EEEEe--C---CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHH
Q 022717 133 AVVKGRAYGVR-----SIRVD--G---NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEW 202 (293)
Q Consensus 133 ~~~~a~a~G~~-----~~~Vd--G---~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~ 202 (293)
+.+-+.-+|+. .+.+| + .|++++.+++++..+ ++..|.+|.+.. |-+. .
T Consensus 194 v~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~---~g~~p~~vvata----GTT~-------~------- 252 (490)
T PLN02880 194 LQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLS---SGLIPFFLCATV----GTTS-------S------- 252 (490)
T ss_pred HHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHH---CCCccEEEEEec----CCCc-------C-------
Confidence 44555666763 44554 2 588888888877654 466788877753 2111 0
Q ss_pred HHhCCCcHHHHHHHHHHCCCCC
Q 022717 203 WRTTQDPVTRFRKWIESNGWWN 224 (293)
Q Consensus 203 ~~~~~dPi~~~~~~L~~~g~~~ 224 (293)
-..||+..+.+...+.|+|-
T Consensus 253 --GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 253 --TAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred --cccCcHHHHHHHHHHcCCEE
Confidence 14678877777777777764
No 386
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=21.87 E-value=1.4e+02 Score=21.49 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHH
Q 022717 210 VTRFRKWIESNGWWNGDIESELRS 233 (293)
Q Consensus 210 i~~~~~~L~~~g~~~~~~~~~i~~ 233 (293)
+..+-.+|+++|++|+++.+.|..
T Consensus 18 ~~~ild~L~~~~vlt~~e~e~I~~ 41 (85)
T PF00619_consen 18 LDDILDHLLSRGVLTEEEYEEIRS 41 (85)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHc
Confidence 556778999999999999999986
No 387
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=21.73 E-value=94 Score=22.88 Aligned_cols=24 Identities=0% Similarity=0.073 Sum_probs=20.4
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHH
Q 022717 212 RFRKWIESNGWWNGDIESELRSSV 235 (293)
Q Consensus 212 ~~~~~L~~~g~~~~~~~~~i~~~~ 235 (293)
.+-.+|+++|++|+++.+.|+..-
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~~~ 47 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKAAT 47 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHccC
Confidence 466899999999999999988743
No 388
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.64 E-value=3.7e+02 Score=23.10 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=22.7
Q ss_pred ceEEEEeCcc-cccchHHHHHHHHHhhcCCCEEEE
Q 022717 79 ACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFI 112 (293)
Q Consensus 79 ~~vv~~~GDG-a~~~G~~~Eal~~A~~~~lpvi~v 112 (293)
.++++|+|++ ...+|..+++...++..++.+-+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI 142 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDII 142 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3667777777 567788777777666666654444
No 389
>PRK14072 6-phosphofructokinase; Provisional
Probab=21.49 E-value=1.6e+02 Score=28.78 Aligned_cols=40 Identities=10% Similarity=-0.095 Sum_probs=23.6
Q ss_pred ceEEEEeCcccccchHHHHHHHHHhhcC--CCEEEE---EEeCCccc
Q 022717 79 ACAVTYFGDGGTSEGDFHAALNFSAVTE--APVIFI---CRNNGWAI 120 (293)
Q Consensus 79 ~~vv~~~GDGa~~~G~~~Eal~~A~~~~--lpvi~v---i~NN~~~~ 120 (293)
...|++-|||++.. .+.--..+...+ +|+|-| |+|+-++.
T Consensus 105 d~LivIGGdgS~~~--a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gt 149 (416)
T PRK14072 105 GYFFYNGGNDSMDT--ALKVSQLAKKMGYPIRCIGIPKTIDNDLPGT 149 (416)
T ss_pred CEEEEECChHHHHH--HHHHHHHHHHhCCCceEEEeeecccCCCCCC
Confidence 45788889999862 222112233345 787776 67766544
No 390
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=21.41 E-value=4e+02 Score=20.77 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=34.1
Q ss_pred HHHHHHhhhcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEE
Q 022717 66 VGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 114 (293)
Q Consensus 66 ~G~A~a~k~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~ 114 (293)
+...+...........+.+-+|.....+.+...|+.+...++.-|-++.
T Consensus 72 L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l~t 120 (122)
T TIGR02803 72 LGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLKIGLVG 120 (122)
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 3334433333334567889999999988999999999998887444444
No 391
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=21.37 E-value=2e+02 Score=19.14 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.4
Q ss_pred CCChHHHHHHHhCCCcH
Q 022717 194 YRPVDEIEWWRTTQDPV 210 (293)
Q Consensus 194 Yr~~~e~~~~~~~~dPi 210 (293)
||+.+|+..|. ..++-
T Consensus 21 ~RT~dEI~~W~-~~s~~ 36 (51)
T PF06945_consen 21 GRTLDEIRDWK-SMSDD 36 (51)
T ss_pred CCcHHHHHHHh-hCCHH
Confidence 79999999997 34443
No 392
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=21.36 E-value=1e+03 Score=26.67 Aligned_cols=88 Identities=22% Similarity=0.346 Sum_probs=49.9
Q ss_pred HHHHHhhcCceEEEE-eC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChHHHHHHHhCCCcH
Q 022717 133 AVVKGRAYGVRSIRV-DG-NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPV 210 (293)
Q Consensus 133 ~~~~a~a~G~~~~~V-dG-~D~~~v~~a~~~a~~~~r~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~dPi 210 (293)
|.+.+..-|+.++++ |. ||+..+..+++.+.+ .++ .+--+.||= +.. .| |. |++-.++.+.
T Consensus 630 f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~----~g~-~~~~~i~yt-~~~--~d-~~--~~~~~l~y~~------ 692 (1143)
T TIGR01235 630 FVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAE----AGK-VVEAAICYT-GDI--LD-PA--RPKYDLKYYT------ 692 (1143)
T ss_pred HHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHH----cCC-EEEEEEEEe-ccC--CC-cC--CCCCCHHHHH------
Confidence 466778889999997 65 788777777666654 343 444455542 111 11 11 2211122111
Q ss_pred HHHHHHHHH-----------CCCCCHHHHHHHHHHHHHH
Q 022717 211 TRFRKWIES-----------NGWWNGDIESELRSSVRKQ 238 (293)
Q Consensus 211 ~~~~~~L~~-----------~g~~~~~~~~~i~~~~~~~ 238 (293)
.+.+.|.+ .|+++..+..++-+.++++
T Consensus 693 -~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~ 730 (1143)
T TIGR01235 693 -NLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREK 730 (1143)
T ss_pred -HHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 12223332 4788888888888888766
No 393
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=21.18 E-value=7.7e+02 Score=23.99 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=27.1
Q ss_pred HHHH-HhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCCC
Q 022717 98 ALNF-SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 151 (293)
Q Consensus 98 al~~-A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D 151 (293)
++.+ |+..++++++++-...+... +.-....+.||..++.+++..
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k---------~~k~~~m~~~GA~Vi~~~~~~ 177 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQK---------PYRKYLMELYGAEVIPSPSEF 177 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccC---------HHHHHHHHHcCCEEEEECCch
Confidence 3554 56678996666553322111 111356789999999998753
No 394
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=21.03 E-value=80 Score=21.86 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCccccccc
Q 022717 231 LRSSVRKQILHALQEAEKAEKPPISDLFTD 260 (293)
Q Consensus 231 i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~ 260 (293)
-++-++++-++|-+.|++...|+|.++..+
T Consensus 5 fDeyW~~Ra~eA~~~a~~aY~pdP~~Vt~~ 34 (56)
T PF04431_consen 5 FDEYWQKRAEEARKAALAAYVPDPENVTNE 34 (56)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 345567777888889999999988876443
No 395
>PRK06381 threonine synthase; Validated
Probab=20.66 E-value=6.6e+02 Score=23.00 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=27.3
Q ss_pred HHHH-HhhcCCCEEEEEEeCCccccccccCccCcccHHHHHhhcCceEEEEeCC
Q 022717 98 ALNF-SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 150 (293)
Q Consensus 98 al~~-A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~ 150 (293)
++.+ |+..++|+++++..+- ...-.+..+.||..++.+++.
T Consensus 77 alA~~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~ 118 (319)
T PRK06381 77 SIAYFARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK 118 (319)
T ss_pred HHHHHHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC
Confidence 3444 5667899777776431 112345688999999999874
No 396
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=20.56 E-value=6.5e+02 Score=22.86 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=47.3
Q ss_pred HHHHHHHhh--hcCCCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccccCccCcccHHHH-HhhcC
Q 022717 65 AVGAAYALK--MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVK-GRAYG 141 (293)
Q Consensus 65 A~G~A~a~k--~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~~~~~~~~d~~~~-a~a~G 141 (293)
|+.+|.|.. .-.-+..+-..++|-++.++...|.+..=...+.. |-|+-|=.--.+.+.... +..+.++- ++.++
T Consensus 95 alaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~-v~ilaDV~~kh~~~l~~~-~~~~~~~~a~~~~~ 172 (254)
T PF03437_consen 95 ALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGAD-VKILADVHVKHSSPLATR-DLEEAAKDAVERGG 172 (254)
T ss_pred HHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCC-eEEEeeechhhcccCCCC-CHHHHHHHHHHhcC
Confidence 455555432 22235667788899999889999988887777777 333333222222222111 11122222 25567
Q ss_pred ceEEEEeCC
Q 022717 142 VRSIRVDGN 150 (293)
Q Consensus 142 ~~~~~VdG~ 150 (293)
..++-|.|.
T Consensus 173 aDaviVtG~ 181 (254)
T PF03437_consen 173 ADAVIVTGK 181 (254)
T ss_pred CCEEEECCc
Confidence 788888764
No 397
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=20.51 E-value=1.4e+02 Score=27.63 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=29.1
Q ss_pred CceEEEEeCcccccchH--------HHHHHHHHhhcCCCEEEEEEeCCccc
Q 022717 78 DACAVTYFGDGGTSEGD--------FHAALNFSAVTEAPVIFICRNNGWAI 120 (293)
Q Consensus 78 ~~~vv~~~GDGa~~~G~--------~~Eal~~A~~~~lpvi~vi~NN~~~~ 120 (293)
++.|+++.=|..+.-|. +..++.+|...++|+|++++..+..+
T Consensus 119 G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~lPlV~l~dSgGaRm 169 (285)
T TIGR00515 119 GMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDNCPLIIFSASGGARM 169 (285)
T ss_pred CEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCccc
Confidence 45667777774443332 23456778889999999999888743
No 398
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=20.43 E-value=6.2e+02 Score=22.63 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=61.2
Q ss_pred CCceEEEEeCcccccchHHHHHHHHHhhcCCCEEEEEEeCCccccccc-cC----------------cc----------C
Q 022717 77 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SD----------------QF----------R 129 (293)
Q Consensus 77 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vi~NN~~~~~~~~-~~----------------~~----------~ 129 (293)
.+..++++-||-+...|.+.. ++..++-|+-+|..+...-+.++. +. .. +
T Consensus 79 ~g~~pi~lGGdhsis~~~~~~---l~~~~~~~i~vI~~DAH~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~iG~r 155 (277)
T PF00491_consen 79 AGAFPIVLGGDHSISYGTIAA---LARAYGGPIGVIWFDAHPDLRTPETSGSGNSHGMPLRRALEEPLLDPENVVQIGIR 155 (277)
T ss_dssp TTEEEEEEESSGGGHHHHHHH---HHHHHTTTEEEEEESSS----STTTTTSSSGTTSHHHHHHHTTSSEGGGEEEEEE-
T ss_pred CCCEEEecCCCchhHHHhHHH---HHhhcCCCeeEEEecCccCCCcccccCCCCCCCChhhhhcccCCcCcCcEEEEecc
Confidence 477899999999998775532 444556678888877765443222 00 00 0
Q ss_pred --ccc-HHHHHhhcCceEEEEeCCCHHH--HHHHHHHHHHHhhccCCcEEEEEEeecC
Q 022717 130 --SDG-AVVKGRAYGVRSIRVDGNDALA--IYSAVHAAREMAIGEGRPILIEALTYRV 182 (293)
Q Consensus 130 --~~d-~~~~a~a~G~~~~~VdG~D~~~--v~~a~~~a~~~~r~~~gP~lIe~~t~R~ 182 (293)
... -.++.+..|+..+..+ ++.. +.+.++++.+.+++...|+.|.+...=+
T Consensus 156 ~~~~~~e~~~~~~~~i~~~~~~--~i~~~g~~~~~~~~~~~~~~~~~~vylsiDiDvl 211 (277)
T PF00491_consen 156 SFDNESEYEYLKELGIKIFSAD--EIREDGIDAVLEEILEALGSGTDPVYLSIDIDVL 211 (277)
T ss_dssp STTHHHHHHHHHHTTSEEEEHH--HHHHHHHHHHHHHHHHHHTTSTSEEEEEEEGGGB
T ss_pred cccchHHHHHHHHcCCEEEehh--HhhhhhhhhHHHHHHHHHhcCCCeEEEEEehhhc
Confidence 111 1234577888888765 3332 4456777887776567899999987644
No 399
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=20.35 E-value=3.2e+02 Score=24.52 Aligned_cols=74 Identities=26% Similarity=0.255 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhc-CCC-EEE-EEEeCCccccc-c---cc-CccCcccHHHHHhhcCceEEEEeC-CCHHHHHHHHHHHHH
Q 022717 94 DFHAALNFSAVT-EAP-VIF-ICRNNGWAIST-P---IS-DQFRSDGAVVKGRAYGVRSIRVDG-NDALAIYSAVHAARE 164 (293)
Q Consensus 94 ~~~Eal~~A~~~-~lp-vi~-vi~NN~~~~~~-~---~~-~~~~~~d~~~~a~a~G~~~~~VdG-~D~~~v~~a~~~a~~ 164 (293)
.+.|||.+|..- ..| ||- +|..+.-..+| . .. .-.+.+.+...+...|..++.|++ .|+.++. +
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i-------~ 222 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYI-------H 222 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHH-------H
Confidence 688999998664 567 664 55544432221 1 11 122345566667778999999998 4555443 3
Q ss_pred HhhccCCcEEEE
Q 022717 165 MAIGEGRPILIE 176 (293)
Q Consensus 165 ~~r~~~gP~lIe 176 (293)
++ .+.|+||+
T Consensus 223 yL--E~~pvLI~ 232 (232)
T TIGR01204 223 CL--EQKPILIE 232 (232)
T ss_pred HH--hcCcEEeC
Confidence 33 25799884
No 400
>COG3462 Predicted membrane protein [Function unknown]
Probab=20.13 E-value=1.8e+02 Score=22.95 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=17.6
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHH
Q 022717 213 FRKWIESNGWWNGDIESELRSSVR 236 (293)
Q Consensus 213 ~~~~L~~~g~~~~~~~~~i~~~~~ 236 (293)
++++ .++|-+||||...+.++++
T Consensus 94 lkER-~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 94 LKER-YAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred HHHH-HhcCCCCHHHHHHHHHHhc
Confidence 4455 4678999999998888765
No 401
>PRK09932 glycerate kinase II; Provisional
Probab=20.13 E-value=4e+02 Score=25.76 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=22.5
Q ss_pred EEEEeCccccc----chH-HHHHHHHHhhcCCCEEEEEE
Q 022717 81 AVTYFGDGGTS----EGD-FHAALNFSAVTEAPVIFICR 114 (293)
Q Consensus 81 vv~~~GDGa~~----~G~-~~Eal~~A~~~~lpvi~vi~ 114 (293)
=++++|.|.+- .|- ...-...|..++.|+|.||-
T Consensus 286 DlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G 324 (381)
T PRK09932 286 ALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAG 324 (381)
T ss_pred CEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEec
Confidence 47888988773 222 34445567778888887765
No 402
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=20.13 E-value=3.2e+02 Score=19.81 Aligned_cols=34 Identities=6% Similarity=0.007 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022717 210 VTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 244 (293)
Q Consensus 210 i~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~ 244 (293)
|..+.+.|++.| ++.++++.+..=-.+-...+++
T Consensus 34 I~~~Eq~Li~eG-~~~eeiq~LCdvH~~lf~~~i~ 67 (71)
T PF04282_consen 34 ISAAEQELIQEG-MPVEEIQKLCDVHAALFKGSIE 67 (71)
T ss_pred HHHHHHHHHHcC-CCHHHHHHHhHHHHHHHHHHHH
Confidence 355789999999 8999988887655444444443
Done!