BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022719
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 9/135 (6%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A +R+ Q+ ++ +P + PL NI EW + +RGP T +EGG YHG++ P E+P
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 72 FKPPSFMLLT--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGS 123
FKPPS ++T T++CLSI++ HP+ W P+WSV T L L++FM LGS
Sbjct: 75 FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM-VEKGPTLGS 133
Query: 124 LDYKKEERRALAIKS 138
++ +R LA++S
Sbjct: 134 IETSDFTKRQLAVQS 148
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 25/123 (20%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +L E+K +Q P + F ++L E +++ W+ AI GP +T +EGG + R++ P +YP+
Sbjct: 10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69
Query: 73 KPPSFMLLTT----------KICLSISNHHP------------EHWQPSWSVRTALVALI 110
PP+F LT +C+SI HP E W P+ +VRT L+++I
Sbjct: 70 SPPAFRFLTKMWHPNIYETGDVCISI--LHPPVDDPQSGELPSERWNPTQNVRTILLSVI 127
Query: 111 AFM 113
+ +
Sbjct: 128 SLL 130
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E++++Q +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 7 ALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYP 66
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ +V L+++ + + +PN
Sbjct: 67 FKPPKVAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 119
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 25/123 (20%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +L E+K +Q P + F ++L E +++ W+ AI GP +T +EGG + R++ P +YP+
Sbjct: 7 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 73 KPPSFMLLTT----------KICLSISNHHP------------EHWQPSWSVRTALVALI 110
PP+F LT +C+SI HP E W P+ +VRT L+++I
Sbjct: 67 SPPAFRFLTKMWHPNIYETGDVCISI--LHPPVDDPQSGELPSERWNPTQNVRTILLSVI 124
Query: 111 AFM 113
+ +
Sbjct: 125 SLL 127
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 20 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ +V L+++ + + +PN
Sbjct: 80 FKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 132
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 4 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ +V L+++ + + +PN
Sbjct: 64 FKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 116
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ +V L+++ + + +PN
Sbjct: 68 FKPPKIAFTTKIYHPNINSNGSICLDILR---SQWSPALTVSKVLLSICSLL-CDPN 120
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + + P+ +++F WQ I GP D+ + GG++ I P++YP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I + W P+ ++ L+++ + + T+PN
Sbjct: 82 FKPPKVNFTTKIYHPNINSQGAICLDILK---DQWSPALTISKVLLSISSLL-TDPN 134
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ + GG++ I P +YP
Sbjct: 2 ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I + W P+ ++ L+++ + + T+PN
Sbjct: 62 FKPPKVNFTTRIYHPNINSNGSICLDILR---DQWSPALTISKVLLSISSLL-TDPN 114
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 22/121 (18%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72 FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
FKPP + TTKI +HP W P+ +V L+++ + + +P
Sbjct: 68 FKPPK-IAFTTKI------YHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLL-CDP 119
Query: 118 N 118
N
Sbjct: 120 N 120
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 80 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 132
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A++RI +E++E+Q +P + + P+ ++IF W I GP D+ ++GG++ + P +YP
Sbjct: 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FK P +T ICL I + W P+ ++ L+++ + + T+PN
Sbjct: 65 FKAPRVTFMTKVYHPNINKNGVICLDILK---DQWSPALTLSRVLLSISSLL-TDPN 117
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 7 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 66
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 67 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 119
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 62 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 114
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 10 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 69
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 70 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 122
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 12 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 72 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 124
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 113
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 12 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 72 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 124
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWGPALTISKVLLSICSLL-CDPN 116
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI +E+ +++ +P + P+ ++++ WQ +I GP D+ + GG++ I P +YPFK
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMP-TNPNGAL 121
PP T ICL I + W P+ ++ L+++ + + NP+ L
Sbjct: 65 PPKISFTTKIYHPNINANGNICLDILK---DQWSPALTLSKVLLSICSLLTDANPDDPL 120
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 25/133 (18%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ + P +Y
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 71 PFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVAL 109
P PP ++C+SI H P E W P SV L+++
Sbjct: 64 PLSPPKMRFTCEMFHPNIYPDGRVCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSV 122
Query: 110 IAFM--PTNPNGA 120
++ + P + +GA
Sbjct: 123 VSMLAEPNDESGA 135
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 25/138 (18%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
++ A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ +
Sbjct: 3 HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 66 LPAEYPFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRT 104
P +YP PP ++C+SI H P E W P SV
Sbjct: 63 FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL-HAPGDDPMGYESSAERWSPVQSVEK 121
Query: 105 ALVALIAFM--PTNPNGA 120
L+++++ + P + +GA
Sbjct: 122 ILLSVVSMLAEPNDESGA 139
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 25/138 (18%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
++ A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ +
Sbjct: 2 HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 66 LPAEYPFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRT 104
P +YP PP ++C+SI H P E W P SV
Sbjct: 62 FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISIL-HAPGDDPMGYESSAERWSPVQSVEK 120
Query: 105 ALVALIAFM--PTNPNGA 120
L+++++ + P + +GA
Sbjct: 121 ILLSVVSMLAEPNDESGA 138
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 25/133 (18%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ + P +Y
Sbjct: 10 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 71 PFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVAL 109
P PP ++C+SI H P E W P SV L+++
Sbjct: 70 PLSPPKMRFTCEMFHPNIYPDGRVCISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSV 128
Query: 110 IAFM--PTNPNGA 120
++ + P + +GA
Sbjct: 129 VSMLAEPNDESGA 141
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDALR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 116
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E++++ +P + P+ +++F WQ I GP ++ ++GG++ I P +YP
Sbjct: 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
FKPP T ICL I W P+ ++ L+++ + + +PN
Sbjct: 65 FKPPKVAFTTRIYHPNINSNGSICLDILR---SQWSPALTISKVLLSICSLL-CDPN 117
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72 FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
FKPP + TT+I +HP W P+ ++ L+++ + + +P
Sbjct: 80 FKPPK-VAFTTRI------YHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLL-CDP 131
Query: 118 N 118
N
Sbjct: 132 N 132
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 5 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 72 FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
FKPP + TT+I +HP W P+ ++ L+++ + + +P
Sbjct: 65 FKPPK-VAFTTRI------YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLL-CDP 116
Query: 118 N 118
N
Sbjct: 117 N 117
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ P+ +R++++ K++Q +P P E+NI W+ I GP +T FE G + ++
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 68 AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM---- 113
EYP KPP+ ++ ICL I + W P++ V L ++ + +
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQN---RWSPTYDVAAILTSIQSLLDEPN 117
Query: 114 PTNPNGALGSLDYKKEER 131
P +P +L + Y++ R
Sbjct: 118 PNSPANSLAAQLYQENRR 135
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 2 ALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLTTKICLSISNHHP--------------EHWQPSWSVRTALVALIAFMPTNP 117
FKPP + TT+I +HP W P+ ++ L+++ + + +P
Sbjct: 62 FKPPK-VAFTTRI------YHPAINSNGSISLDILRSQWSPALTISKVLLSICSLL-CDP 113
Query: 118 N 118
N
Sbjct: 114 N 114
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 17/139 (12%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
++ P+ +R++++ K++Q +P P E+NI W+ I GP +T FE G + ++
Sbjct: 3 HMTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF 62
Query: 67 PAEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM--- 113
EYP KPP+ ++ ICL I + W P++ V L ++ + +
Sbjct: 63 TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQN---RWSPTYDVAAILTSIQSLLDEP 119
Query: 114 -PTNPNGALGSLDYKKEER 131
P +P +L + Y++ R
Sbjct: 120 NPNSPANSLAAQLYQENRR 138
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
FKPP + TT+I +HP W P+ ++ L+++ + + +P
Sbjct: 62 FKPPK-VAFTTRI------YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLL-CDP 113
Query: 118 N 118
N
Sbjct: 114 N 114
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI +E + + + P M++P+ EN + I GP T +EGG Y + LP +YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
PP LT +ICL I + W P+ +RT L+++ A +
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 110
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
P LT +ICL + +W P+ +RT L+++ A + + NPN L
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 124
Query: 123 ---SLDYKKEERRALAIKSRE 140
+ D+ K E+ A A K+RE
Sbjct: 125 NDVAEDWIKNEQGAKA-KARE 144
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI +E + + + P M++P+ EN + I GP T +EGG Y + LP +YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
PP LT +ICL I + W P+ +RT L+++ A +
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILK---DKWSPALQIRTVLLSIQALL 110
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 22/121 (18%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
FKPP + TT+I +HP W P+ ++ L+++ + + +P
Sbjct: 64 FKPPK-VAFTTRI------YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLL-CDP 115
Query: 118 N 118
N
Sbjct: 116 N 116
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
P LT +ICL + +W P+ +RT L+++ A + + NPN L
Sbjct: 66 APKVRFLTKIYHPNIDRLGRICLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 122
Query: 123 ---SLDYKKEERRALAIKSRE 140
+ D+ K E+ A A K+RE
Sbjct: 123 NDVAEDWIKNEQGAKA-KARE 142
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ PA +R++++ K +Q +P P E NI +W I GP T FE G + I+
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 68 AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM---- 113
EYP KPP+ L+ ICL I + W P++ V + L ++ + +
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNVYADGSICLDILQN---RWSPTYDVSSILTSIQSLLDEPN 117
Query: 114 ---PTNPNGALGSLDYKKE-ERRALAI 136
P N A + K+E E+R AI
Sbjct: 118 PNSPANSQAAQLYQENKREYEKRVSAI 144
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 22/121 (18%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72 FKPPSFMLLTTKICLSISNHHPE--------------HWQPSWSVRTALVALIAFMPTNP 117
FKPP + TT+I +HP W P+ + L+++ + + +P
Sbjct: 61 FKPPK-VAFTTRI------YHPNINSNGSISLDILRSQWSPALKISKVLLSICSLL-CDP 112
Query: 118 N 118
N
Sbjct: 113 N 113
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 25/182 (13%)
Query: 3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
E+ Y + + R+ +E+K++++ + + + N FEW I+GP T +EGG +
Sbjct: 15 ENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL 74
Query: 63 RIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIA 111
I +P +YP+ PP +T ICL + + W P+ ++RTAL+++ A
Sbjct: 75 AITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKN---EWSPALTIRTALLSIQA 131
Query: 112 FM----PTNPNGALGSLDYKKEERRALAIKSREAAPK-FGT-PE---RQKLIDEIHEYML 162
+ P +P A + YK E AL +K+ K F T P+ R+ +I +I E
Sbjct: 132 LLSDPQPDDPQDAEVAKMYK--ENHALFVKTASVWTKTFATGPKEEPREVIIKKITEMGF 189
Query: 163 SK 164
S+
Sbjct: 190 SE 191
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 18 QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
+++ E+ NP + F + +++N ++ W+ I GP DT +EGG++ + P +YP +PP
Sbjct: 24 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 77 FMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVALIAFMPT 115
+T +C+SI H P E W P +V T ++++I+ +
Sbjct: 84 MKFITEIWHPNVDKNGDVCISIL-HEPGEDKYGYEKPEERWLPIHTVETIMISVISML-A 141
Query: 116 NPNG-ALGSLDYKKEER 131
+PNG + ++D KE R
Sbjct: 142 DPNGDSPANVDAAKEWR 158
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ PA KR++++ K +Q +P P + NI W I GP DT ++GG + +Q
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 68 AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-N 116
+YP KPP+ ++ ICL I + W P + V L ++ + + N
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQN---QWSPIYDVAAILTSIQSLLCDPN 117
Query: 117 PNGALGS 123
PN S
Sbjct: 118 PNSPANS 124
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
L + + KRI +E+ ++ +P + + P +NI+EW+ I GP + +EGG++ I
Sbjct: 45 LLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFT 104
Query: 68 AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMP-TN 116
EYPFKPP T ICL I ++W P+ ++ L+++ + + N
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCN 161
Query: 117 PNGAL-GSLDYKKEERRA 133
P L GS+ + RA
Sbjct: 162 PADPLVGSIATQYMTNRA 179
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 15/134 (11%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
+ KRI +E+ E+ +P + + P +NI+EW+ I GP + +EGG++ I +YP
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 72 FKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMP-TNPNGA 120
FKPP T ICL I ++W P+ ++ L+++ + + NP
Sbjct: 64 FKPPKVTFRTRIYHCNINSQGVICLDILK---DNWSPALTISKVLLSICSLLTDCNPADP 120
Query: 121 L-GSLDYKKEERRA 133
L GS+ + RA
Sbjct: 121 LVGSIATQYMTNRA 134
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
++ KR+ QE++ + + + P +N+F+W + GP DT +E Y ++ P+
Sbjct: 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66
Query: 69 EYPFKPPSFMLLT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
+YP+KPP T ICL I E+W S+ VRT L++L + + PN
Sbjct: 67 DYPYKPPVVKFTTPCWHPNVDQSGNICLDILK---ENWTASYDVRTILLSLQSLL-GEPN 122
Query: 119 GA 120
A
Sbjct: 123 NA 124
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 18/141 (12%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
P LT +I L + +W P+ +RT L+++ A + + NPN L
Sbjct: 66 APKVRFLTKIYHPAIDRLGRISLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 122
Query: 123 ---SLDYKKEERRALAIKSRE 140
+ D+ K E+ A A K+RE
Sbjct: 123 NDVAEDWIKNEQGAKA-KARE 142
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 18/141 (12%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
P LT +I L + +W P+ +RT L+++ A + + NPN L
Sbjct: 66 APKVRFLTKIYHPNIDRLGRISLDVLK---TNWSPALQIRTVLLSIQALLASPNPNDPLA 122
Query: 123 ---SLDYKKEERRALAIKSRE 140
+ D+ K E+ A A K+RE
Sbjct: 123 NDVAEDWIKNEQGAKA-KARE 142
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ PA +R++++ K M+ + + PL +N+ W I GP DT +E G + ++
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 68 AEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 117
EYP KPP L+ +ICL I + W P++ V + L ++ + +P
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQN---RWTPTYDVASILTSIQSLF-NDP 116
Query: 118 NGA 120
N A
Sbjct: 117 NPA 119
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
P +T +ICL I + W P+ +RT L+++ A + NP+ L
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 124
Query: 123 S 123
+
Sbjct: 125 N 125
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
P +T +ICL I + W P+ +RT L+++ A + NP+ L
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 122
Query: 123 S 123
+
Sbjct: 123 N 123
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
P +T +ICL I + W P+ +RT L+++ A + NP+ L
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 127
Query: 123 S 123
+
Sbjct: 128 N 128
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
P +T +ICL I + W P+ +RT L+++ A + NP+ L
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 120
Query: 123 S 123
+
Sbjct: 121 N 121
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 74 PPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 122
P +T +ICL I + W P+ +RT L+++ A + NP+ L
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPNPDDPLA 125
Query: 123 S 123
+
Sbjct: 126 N 126
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 25/148 (16%)
Query: 18 QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
+++ +M+ P D F + +++N I++W+ + GP DT +EGG + + P +YP KPP
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 77 FMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVALIAFMPT 115
++ +C+SI H P E W P +V T L+++I+ M T
Sbjct: 70 MKFISEIWHPNIDKEGNVCISIL-HDPGDDKWGYERPEERWLPVHTVETILLSVIS-MLT 127
Query: 116 NPN-GALGSLDYKKEERRALAIKSREAA 142
+PN + ++D K +R A ++ A
Sbjct: 128 DPNFESPANVDAAKMQRENYAEFKKKVA 155
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A +R+++E++E++ +F ++ ++E N+ WQ I P + ++ G + I PAEY
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61
Query: 71 PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM----PTN 116
PFKPP T ++CL + + E+W+P+ + +LIA + P +
Sbjct: 62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISA--ENWKPATKTDQVIQSLIALVNDPQPEH 119
Query: 117 PNGALGSLDYKKEERRALAIKSREAAPKFG 146
P A + +Y K +R+ + E K+G
Sbjct: 120 PLRADLAEEYSK-DRKKFCKNAEEFTKKYG 148
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A +R+++E++E++ +F ++ ++E N+ WQ I P + ++ G + I PAEY
Sbjct: 5 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 63
Query: 71 PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALIAFM----PTN 116
PFKPP T ++CL + + E+W+P+ + +LIA + P +
Sbjct: 64 PFKPPKITFKTKIYHPNIDEKGQVCLPVISA--ENWKPATKTDQVIQSLIALVNDPQPEH 121
Query: 117 PNGALGSLDYKKEERRALAIKSREAAPKFG 146
P A + +Y K +R+ + E K+G
Sbjct: 122 PLRADLAEEYSK-DRKKFCKNAEEFTKKYG 150
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 21/141 (14%)
Query: 6 YNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHG 62
+++ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y
Sbjct: 52 FDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 111
Query: 63 RIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIA 111
I++P YPF PP +T ICL I + W + ++RT L++L A
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQA 168
Query: 112 FM----PTNPNGALGSLDYKK 128
+ P +P A+ + YK+
Sbjct: 169 LLAAAEPDDPQDAVVANQYKQ 189
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 24/134 (17%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A KR+L+E++++ + ++ P E NIF W I+GP DT + G+++ +++ P +Y
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 71 PFKPPSFMLLTT----------KICLSISNHHP-----------EHWQPSWSVRTALVAL 109
P PP + ++C+SI H P E W P SV L+++
Sbjct: 65 PLSPPKLTFTPSILHPNIYPNGEVCISIL-HSPGDDPNMYELAEERWSPVQSVEKILLSV 123
Query: 110 IAFMPTNPNGALGS 123
++ + + PN G+
Sbjct: 124 MSML-SEPNIESGA 136
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
KRI++E++ ++ +P+ + E +I + GP T +EGG + I++P EYPF
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 73 KPPSFML-----------LTTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PTNP 117
KPP +T ICL I + W P ++++AL++L A + P +P
Sbjct: 65 KPPKMQFDTKVYHPNISSVTGAICLDILRN---AWSPVITLKSALISLQALLQSPEPNDP 121
Query: 118 NGA 120
A
Sbjct: 122 QDA 124
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 19/132 (14%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
KRI++E++ ++ +P+ + E +I + GP T +EGG + I++P EYPF
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 73 KPPSFML-----------LTTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PTNP 117
KPP +T ICL I + W P ++++AL++L A + P +P
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKN---AWSPVITLKSALISLQALLQSPEPNDP 120
Query: 118 NGALGSLDYKKE 129
A + Y ++
Sbjct: 121 QDAEVAQHYLRD 132
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 21/142 (14%)
Query: 5 RYNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYH 61
R ++ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y
Sbjct: 15 RGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 74
Query: 62 GRIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALI 110
I++P YPF PP +T ICL I + W + ++RT L++L
Sbjct: 75 LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQ 131
Query: 111 AFM----PTNPNGALGSLDYKK 128
A + P +P A+ + YK+
Sbjct: 132 ALLAAAEPDDPQDAVVANQYKQ 153
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 21/139 (15%)
Query: 8 LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
+ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y I
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 65 QLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
++P YPF PP +T ICL I + W + ++RT L++L A +
Sbjct: 65 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALL 121
Query: 114 ----PTNPNGALGSLDYKK 128
P +P A+ + YK+
Sbjct: 122 AAAEPDDPQDAVVANQYKQ 140
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 21/140 (15%)
Query: 7 NLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGR 63
++ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y
Sbjct: 2 SMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 61
Query: 64 IQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAF 112
I++P YPF PP +T ICL I + W + ++RT L++L A
Sbjct: 62 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQAL 118
Query: 113 M----PTNPNGALGSLDYKK 128
+ P +P A+ + YK+
Sbjct: 119 LAAAEPDDPQDAVVANQYKQ 138
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 39 NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTT-----------KICLS 87
+I W+ I GP T +EGG + I +P +YP+ PP +T ICL
Sbjct: 73 DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLD 132
Query: 88 ISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGA 120
I H W P+ ++RTAL+++ A + PT+P A
Sbjct: 133 ILKH---EWSPALTIRTALLSIQAMLADPVPTDPQDA 166
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 21/139 (15%)
Query: 8 LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
+ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y I
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 65 QLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIAFM 113
++P YPF PP +T ICL I + W + ++RT L++L A +
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK---DQWAAAMTLRTVLLSLQALL 118
Query: 114 ----PTNPNGALGSLDYKK 128
P +P A+ + YK+
Sbjct: 119 AAAEPDDPQDAVVANQYKQ 137
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
M + NL ++ + +EV + ++P D P EE++ + Q I GP T + GG++
Sbjct: 3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF 62
Query: 61 HGRIQLPAEYPFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVALI 110
++ L ++P PP LT +IC+++ W +R L+ +
Sbjct: 63 RMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK---RDWTAELGIRHVLLTIK 119
Query: 111 AFMPT-NPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIH 158
+ NP AL +E R L E A R +L+ EIH
Sbjct: 120 CLLIHPNPESAL-----NEEAGRLLLENYEEYA------ARARLLTEIH 157
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 8 LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
+ + + RI++E K +++ SDD ++ P E ++ +W+ I GP DT +
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56 EGGIYHGRIQLPAEYPFKPPSFMLL------------TTKICLSISNHHPEHWQPSWSVR 103
E + I++P+ YP PP + T +ICL+I PE W P W +
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK--PEEWTPVWDLL 120
Query: 104 TALVAL 109
+ A+
Sbjct: 121 HCVHAV 126
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 8 LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
+ + + RI++E K +++ SDD ++ P E ++ +W+ I GP DT +
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56 EGGIYHGRIQLPAEYPFKPPSFMLL------------TTKICLSISNHHPEHWQPSWSVR 103
E + I++P+ YP PP + T +ICL+I PE W P W +
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILK--PEEWTPVWDLL 120
Query: 104 TALVAL 109
+ A+
Sbjct: 121 HCVHAV 126
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 8 LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
+ + + RI++E K +++ SDD ++ P E ++ +W+ I GP DT +
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56 EGGIYHGRIQLPAEYPFKPPSFMLL------------TTKICLSISNHHPEHWQPSWSVR 103
E + I++P+ YP PP + T +ICL+I PE W P W +
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK--PEEWTPVWDLL 120
Query: 104 TALVAL 109
+ A+
Sbjct: 121 HCVHAV 126
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
+ P KR+ QE+ + + + P +N+F+W I G T +E Y ++ P+
Sbjct: 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87
Query: 69 EYPFKPPSFMLLT----------TKICLSISNHHPEHWQPSWSVRTALVALIAFM 113
YP+ P+ LT I L I E W + VRT L+++ + +
Sbjct: 88 GYPYNAPTVKFLTPCYHPNVDTQGNISLDILK---EKWSALYDVRTILLSIQSLL 139
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 12 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 71
Query: 64 IQLPAEYPFKPPSFMLLTTKICLSISNHHP----------EHWQPSWSVRTALVALIAFM 113
++ +YP PPS +T I+N WQ S+S++ L L M
Sbjct: 72 VECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 131
Query: 114 PTNPNGAL 121
+ N L
Sbjct: 132 MSKENMKL 139
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 7 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 66
Query: 64 IQLPAEYPFKPPSFMLLTTKICLSISNHHP----------EHWQPSWSVRTALVALIAFM 113
++ +YP PPS +T I+N WQ S+S++ L L M
Sbjct: 67 VECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 126
Query: 114 PTNPNGAL 121
+ N L
Sbjct: 127 MSKENMKL 134
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 2 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 61
Query: 64 IQLPAEYPFKPPSFMLLTTKICLSISNHHP----------EHWQPSWSVRTALVALIAFM 113
++ +YP PPS +T I+N WQ S+S++ L L M
Sbjct: 62 VECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 121
Query: 114 PTNPNGAL 121
+ N L
Sbjct: 122 MSKENMKL 129
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 16/118 (13%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYH 61
N+ A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++
Sbjct: 2 NMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 62 GRIQLPAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
R+ +YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 62 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 118
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 1 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 60
Query: 64 IQLPAEYPFKPPSFMLLTTKICLSISNHHP----------EHWQPSWSVRTALVALIAFM 113
++ +YP PPS +T I+N WQ S+S++ L L M
Sbjct: 61 VECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLM 120
Query: 114 PTNPNGAL 121
+ N L
Sbjct: 121 MSKENMKL 128
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 27/153 (17%)
Query: 15 RILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
R+ +E K+ + + F + P + ++ W+ I G T +EGG+Y + P E
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 70 YPFKPPSFMLL----------TTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG 119
YP +PP + +CLSI N E W+P+ +++ L+ + + +PN
Sbjct: 74 YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEE-EGWKPAITIKQILLGIQDLL-DDPNI 131
Query: 120 A---------LGSLDYKKEERRALAIKSREAAP 143
A + D + E+R A ++RE AP
Sbjct: 132 ASPAQTEAYTMFKKDKVEYEKRVRA-QARENAP 163
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 4 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLK 63
Query: 64 IQLPAEYPFKPPSFMLLTTKICLSISNHHP-----------EHWQPSWSVRTALVALIAF 112
I+ +YP PP F+ TKI ++ N WQ S+S++ L L
Sbjct: 64 IECGPKYPEAPP-FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 122
Query: 113 MPTNPNGAL 121
M + N L
Sbjct: 123 MMSKENMKL 131
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91
Query: 64 IQLPAEYPFKPPSFMLLTTKICLSISNHHP-----------EHWQPSWSVRTALVALIAF 112
I+ +YP PP F+ TKI ++ N WQ S+S++ L L
Sbjct: 92 IECGPKYPEAPP-FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 150
Query: 113 MPTNPNGAL 121
M + N L
Sbjct: 151 MMSKENMKL 159
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 81
Query: 64 IQLPAEYPFKPPSFMLLTTKICLSISNHHP-----------EHWQPSWSVRTALVALIAF 112
I+ +YP PP F+ TKI ++ N WQ S+S++ L L
Sbjct: 82 IECGPKYPEAPP-FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 140
Query: 113 MPTNPNGAL 121
M + N L
Sbjct: 141 MMSKENMKL 149
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 10 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 69
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 70 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 121
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 7 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 67 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 118
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 116
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 6 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 65
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 66 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 117
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + +CLSI + W+P+ +++ L+ +
Sbjct: 68 KDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEED-KDWRPAITIKQILLGI 119
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
++R+ +E K+ + + F + P+++ ++ +W+ I G T + GG+Y ++
Sbjct: 7 CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 66
Query: 67 PAEYPFKPPSF----------MLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT- 115
P EYP KPP + + ICLSI N + W+P+ +++ ++ + + +
Sbjct: 67 PNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLDSP 125
Query: 116 NPN 118
NPN
Sbjct: 126 NPN 128
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
++R+ +E K+ + + F + P+++ ++ +W+ I G T + GG+Y ++
Sbjct: 5 CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEY 64
Query: 67 PAEYPFKPPSF----------MLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT- 115
P EYP KPP + + ICLSI N + W+P+ +++ ++ + + +
Sbjct: 65 PNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED-QDWRPAITLKQIVLGVQDLLDSP 123
Query: 116 NPN 118
NPN
Sbjct: 124 NPN 126
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
R+ +E+ + + P ++ + + + I G +T +E G++ + +P YPF+P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 75 PSFMLLTT----------KICLSISNHHPE-HWQPSWSVRTALVALIAFMPT-NPNGAL 121
P LT +ICL + P+ W+PS ++ T L ++ M NP+ L
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPL 126
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A R+++E++++Q P +L ++ N+ W A+ P + ++ RI P EY
Sbjct: 2 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 60
Query: 71 PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVAL 109
PFKPP T +ICL I + E+W+P L AL
Sbjct: 61 PFKPPMIKFTTKIYHPNVDENGQICLPIISS--ENWKPCTKTCQVLEAL 107
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A R+++E++++Q P +L ++ N+ W A+ P + ++ RI P EY
Sbjct: 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 63
Query: 71 PFKPPSFMLLTT----------KICLSISNHHPEHWQPSWSVRTALVAL 109
PFKPP T +ICL I + E+W+P L AL
Sbjct: 64 PFKPPMIKFTTKIYHPNVDENGQICLPIISS--ENWKPCTKTCQVLEAL 110
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 18 QEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSF 77
++ +++ N + P+ E++ EW+ I G ++ ++G ++ I +EY + PP
Sbjct: 30 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 89
Query: 78 MLLTTKICLSISNH----------HPEHWQPSWSVRTALVALIAFMPTNP 117
+T ++ H +PE W ++++ + L+AL M +NP
Sbjct: 90 KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLAL-QVMLSNP 138
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 42 EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL-----------TTKICLSISN 90
++ GP T +EGGI+ + LP +YPF PS + + +CL + N
Sbjct: 30 DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN 89
Query: 91 HHPEHWQPSWSVRTALVALIAFMPTNPN 118
+ W P +S+ + + T PN
Sbjct: 90 ---QTWTPLYSLVNVFEVFLPQLLTYPN 114
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + + LSI + W+P+ +++ L+ +
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEED-KDWRPAITIKQILLGI 116
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
+ +YNL N A RI +E+ NP + NI W G +T + +Y
Sbjct: 13 KTKYNLGN-ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKI 71
Query: 63 RIQLPAEYPFKPPSFMLLTT-----------KICLSISNHHPEHWQPSWSVRTALVALIA 111
+I P YP KPP L ICLS+ + + PS S+ ++++I+
Sbjct: 72 KIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG---DDYNPSLSISGLILSIIS 128
Query: 112 FM 113
+
Sbjct: 129 ML 130
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67 PAEYP-------FKPPSF---MLLTTKICLSISNHHPEHWQPSWSVRTALVAL 109
+YP F+PP F + + + LSI + W+P+ +++ L+ +
Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEED-KDWRPAITIKQILLGI 116
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
+YN+ N A RI +E+ +NP + NI W G +T + +Y +I
Sbjct: 1 KYNMGN-ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 65 QLPAEYPFKPPSFMLL-----------TTKICLSISNHHPEHWQPSWSVRTALVALIAFM 113
P +YP KPP L ICLS+ + + PS S+ ++++I+ +
Sbjct: 60 IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG---DDYNPSLSISGLVLSIISML 116
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 42 EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL-----------TTKICLSISN 90
E+ GP T +EGG++ R+ LP +YPFK PS + + +CL + N
Sbjct: 52 EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN 111
Query: 91 HHPEHWQPSWSV----RTALVALIAF-MPTNP-NGALGSLDYKKEERRALAIKSREAAPK 144
+ W + + + L L+A+ P +P NG ++ + E IK E K
Sbjct: 112 ---QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK--EYIQK 166
Query: 145 FGTPERQK 152
+ T E K
Sbjct: 167 YATEEALK 174
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 14 KRILQEVKEMQSNPSDDFMSL---PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
KR+ +E+ +Q++P M+L ++ +I +W + G T +EG + + + Y
Sbjct: 25 KRLQKELLALQNDPPPG-MTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 83
Query: 71 PFKPPSFMLL------------TTKICLSISNHHPEHWQPSWSVRTALVALIAFM 113
PF P M ICLSI E W P+ SV++ +++I+ +
Sbjct: 84 PFDSPQVMFTGENIPVHPHVYSNGHICLSILT---EDWSPALSVQSVCLSIISML 135
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 38 ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL-----------TTKICL 86
+ + E+ +GP T +E G + +QLP++YPFK PS + +CL
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 87 SISNHHPEHWQPSWSVRTALVALIAFMPTNPN 118
+ N + W P + + + + PN
Sbjct: 95 DVIN---QTWTPMYQLENIFDVFLPQLLRYPN 123
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 11 PAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
P R+L E++ Q + +S LE + W I G T FE IY I
Sbjct: 25 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFC 84
Query: 67 PAEYPFKPPSFMLLTTKICLSISN----------HHPEHWQPSWSVRTALVALIAFMPTN 116
YP PP+ + TKI +S + H ++W ++++ T L++L M ++
Sbjct: 85 DDNYPDSPPT-VKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSS 143
Query: 117 PNGAL 121
N L
Sbjct: 144 ANKRL 148
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 11 PAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
P R+L E++ Q + +S LE + W I G T FE IY I
Sbjct: 21 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFC 80
Query: 67 PAEYPFKPPSFMLLTTKICLSISN----------HHPEHWQPSWSVRTALVALIAFMPTN 116
YP PP+ + TKI +S + H ++W ++++ T L++L M ++
Sbjct: 81 DDNYPDSPPT-VKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSS 139
Query: 117 PNGAL 121
N L
Sbjct: 140 ANKRL 144
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 19/74 (25%)
Query: 47 IRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTT---------------KICLSISN- 90
I GP DT + G + + P +YP PP L TT K+CLSI N
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 91 ---HHPEHWQPSWS 101
E W P S
Sbjct: 176 WHGRPEEKWNPQTS 189
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 23/143 (16%)
Query: 14 KRILQEVKEMQSN-PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +++EV E+++N P + P + +Q + P + ++GG + ++P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNM 75
Query: 73 KPPSFMLLTT----------KICLSISNHHP---EHWQPS-------WSVRTALVALIAF 112
PP LT +ICLS+ H W P+ W + + L+ F
Sbjct: 76 VPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNF 135
Query: 113 -MPTNPNGALGSLDYKKEERRAL 134
P N A L K++ R +
Sbjct: 136 DDPLNIEAAEHHLRDKEDFRNKV 158
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 23/143 (16%)
Query: 14 KRILQEVKEMQSN-PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +++EV E+++N P + P + +Q + P + ++GG + ++P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNM 75
Query: 73 KPPSFMLLTT----------KICLSISNHHP---EHWQPS-------WSVRTALVALIAF 112
PP LT +ICLS+ H W P+ W + + L+ F
Sbjct: 76 VPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNF 135
Query: 113 -MPTNPNGALGSLDYKKEERRAL 134
P N A L K++ R +
Sbjct: 136 DDPLNIEAAEHHLRDKEDFRNKV 158
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGRI 64
K P R+L+E+++ + + S L ++ + +W I GP + E IY I
Sbjct: 3 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 62
Query: 65 QLPAEYPFKPPSFMLLTTKICLSISN----------HHPEHWQPSWSVRTALVALIAFMP 114
YP PP + +KI L N H W+ ++++ T L+ L M
Sbjct: 63 DCGPNYPDSPPKVTFI-SKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMA 121
Query: 115 TNPNGAL 121
T N L
Sbjct: 122 TPANKKL 128
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGRI 64
K P R+L+E+++ + + S L ++ + +W I GP + E IY I
Sbjct: 4 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSI 63
Query: 65 QLPAEYPFKPPSFMLLTTKICLSISN----------HHPEHWQPSWSVRTALVALIAFMP 114
YP PP + +KI L N H W+ ++++ T L+ L M
Sbjct: 64 DCGPNYPDSPPKVTFI-SKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMA 122
Query: 115 TNPNGAL 121
T N L
Sbjct: 123 TPANKKL 129
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 87 SISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLD 125
S++N+ SW+ TA VA +++ P N A GSLD
Sbjct: 519 SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 557
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 125 DYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP--PVPQLSTCEEQPGN-- 180
D ++++RAL + + +FG+ Q++I+ + +L P PV + +Q GN
Sbjct: 280 DXSEKQKRALXVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVL 339
Query: 181 ------REGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSR 232
++G + T G+G + R V ED N + +R
Sbjct: 340 PHVFLXKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVTR 397
>pdb|3HVZ|A Chain A, Crystal Structure Of The Tgs Domain Of The Clolep_03100
Protein From Clostridium Leptum, Northeast Structural
Genomics Consortium Target Qlr13a
pdb|3HVZ|B Chain B, Crystal Structure Of The Tgs Domain Of The Clolep_03100
Protein From Clostridium Leptum, Northeast Structural
Genomics Consortium Target Qlr13a
pdb|3HVZ|C Chain C, Crystal Structure Of The Tgs Domain Of The Clolep_03100
Protein From Clostridium Leptum, Northeast Structural
Genomics Consortium Target Qlr13a
pdb|3HVZ|D Chain D, Crystal Structure Of The Tgs Domain Of The Clolep_03100
Protein From Clostridium Leptum, Northeast Structural
Genomics Consortium Target Qlr13a
pdb|3HVZ|E Chain E, Crystal Structure Of The Tgs Domain Of The Clolep_03100
Protein From Clostridium Leptum, Northeast Structural
Genomics Consortium Target Qlr13a
pdb|3HVZ|F Chain F, Crystal Structure Of The Tgs Domain Of The Clolep_03100
Protein From Clostridium Leptum, Northeast Structural
Genomics Consortium Target Qlr13a
Length = 78
Score = 27.7 bits (60), Expect = 7.0, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 27 PSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFM-LLTTK 83
P D +SLP+ + ++ +AI G GRI +P +Y K + +LTTK
Sbjct: 13 PKGDVISLPIGSTVIDFAYAIHSAVGNRXIGAKVDGRI-VPIDYKVKTGEIIDVLTTK 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,662,997
Number of Sequences: 62578
Number of extensions: 412346
Number of successful extensions: 843
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 121
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)