Query 022719
Match_columns 293
No_of_seqs 200 out of 1596
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0428 Non-canonical ubiquiti 100.0 7.1E-50 1.5E-54 358.3 15.9 289 1-292 1-312 (314)
2 KOG0417 Ubiquitin-protein liga 100.0 6.8E-39 1.5E-43 269.8 13.5 133 12-147 2-147 (148)
3 COG5078 Ubiquitin-protein liga 100.0 2.1E-38 4.6E-43 271.1 15.3 136 9-147 3-152 (153)
4 PTZ00390 ubiquitin-conjugating 100.0 1.7E-35 3.7E-40 253.7 16.5 134 12-148 3-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 3.3E-35 7.1E-40 250.7 16.2 132 12-146 2-146 (147)
6 KOG0419 Ubiquitin-protein liga 100.0 3E-35 6.4E-40 242.3 13.3 134 8-144 1-147 (152)
7 KOG0894 Ubiquitin-protein liga 100.0 3.2E-32 7E-37 240.6 14.8 149 9-160 3-159 (244)
8 KOG0424 Ubiquitin-protein liga 100.0 4.6E-32 1E-36 226.4 14.3 139 8-147 1-157 (158)
9 KOG0418 Ubiquitin-protein liga 100.0 5.4E-32 1.2E-36 234.9 14.8 152 8-163 1-175 (200)
10 KOG0426 Ubiquitin-protein liga 100.0 7.5E-31 1.6E-35 216.5 13.4 137 8-145 1-162 (165)
11 KOG0425 Ubiquitin-protein liga 100.0 1.9E-30 4E-35 219.5 14.2 135 11-146 5-164 (171)
12 PF00179 UQ_con: Ubiquitin-con 100.0 1E-30 2.2E-35 219.8 11.5 126 15-142 1-140 (140)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 5.5E-30 1.2E-34 215.8 14.8 127 14-142 2-141 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 6.7E-29 1.4E-33 210.1 15.2 131 14-146 1-145 (145)
15 KOG0421 Ubiquitin-protein liga 100.0 3.5E-29 7.5E-34 209.2 11.7 132 9-144 27-171 (175)
16 KOG0423 Ubiquitin-protein liga 99.9 2.5E-27 5.3E-32 203.5 10.8 143 1-160 1-156 (223)
17 KOG0422 Ubiquitin-protein liga 99.9 1.9E-25 4.1E-30 185.9 12.6 134 12-148 3-150 (153)
18 KOG0416 Ubiquitin-protein liga 99.9 1.4E-24 3.1E-29 186.0 9.8 132 13-150 5-151 (189)
19 KOG0420 Ubiquitin-protein liga 99.9 1.8E-23 3.9E-28 179.6 10.8 134 7-146 24-174 (184)
20 KOG0427 Ubiquitin conjugating 99.9 1.7E-22 3.7E-27 166.8 10.2 107 5-115 9-126 (161)
21 KOG0429 Ubiquitin-conjugating 99.6 7.1E-15 1.5E-19 131.2 11.5 133 14-151 22-174 (258)
22 KOG0895 Ubiquitin-conjugating 99.6 1.5E-15 3.3E-20 159.0 6.1 105 13-117 853-974 (1101)
23 KOG0895 Ubiquitin-conjugating 99.4 2.6E-13 5.6E-18 142.5 10.1 106 11-116 282-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.0 6.4E-10 1.4E-14 92.7 7.4 96 14-113 8-121 (138)
25 KOG0897 Predicted ubiquitin-co 98.0 1.5E-05 3.2E-10 65.2 6.1 53 60-114 13-76 (122)
26 PF14461 Prok-E2_B: Prokaryoti 97.3 0.00046 1E-08 57.8 5.7 62 56-117 34-108 (133)
27 PF05743 UEV: UEV domain; Int 97.2 0.00036 7.7E-09 57.9 4.0 71 39-117 31-119 (121)
28 PF08694 UFC1: Ubiquitin-fold 96.8 0.00065 1.4E-08 57.8 1.9 90 10-106 23-135 (161)
29 KOG3357 Uncharacterized conser 95.6 0.016 3.4E-07 48.8 4.2 87 11-105 27-137 (167)
30 PF05773 RWD: RWD domain; Int 95.2 0.062 1.3E-06 42.3 6.2 66 14-80 4-71 (113)
31 KOG2391 Vacuolar sorting prote 94.9 0.13 2.8E-06 49.7 8.3 102 6-115 15-137 (365)
32 smart00591 RWD domain in RING 94.5 0.19 4.2E-06 39.2 7.3 45 57-113 40-84 (107)
33 PF14462 Prok-E2_E: Prokaryoti 90.2 3.1 6.8E-05 34.8 9.2 84 29-113 12-119 (122)
34 PF09765 WD-3: WD-repeat regio 75.7 2.9 6.2E-05 39.8 3.4 88 10-113 98-186 (291)
35 PF14457 Prok-E2_A: Prokaryoti 72.9 3.3 7.2E-05 36.1 2.9 55 57-113 49-124 (162)
36 KOG4018 Uncharacterized conser 71.4 12 0.00026 34.1 6.2 64 14-80 5-71 (215)
37 KOG0309 Conserved WD40 repeat- 71.2 11 0.00024 40.4 6.6 67 13-81 422-490 (1081)
38 PF04995 CcmD: Heme exporter p 65.7 7.7 0.00017 26.6 2.9 18 259-276 5-22 (46)
39 TIGR03141 cytochro_ccmD heme e 63.1 9.2 0.0002 26.1 2.9 18 259-276 6-23 (45)
40 PF07462 MSP1_C: Merozoite sur 61.5 18 0.00039 37.4 5.8 13 101-113 218-230 (574)
41 PF01307 Plant_vir_prot: Plant 61.0 7.4 0.00016 31.6 2.5 40 254-293 5-52 (104)
42 PF12669 P12: Virus attachment 60.3 6.9 0.00015 28.4 2.0 22 262-283 2-24 (58)
43 COG3765 WzzB Chain length dete 52.6 24 0.00052 34.5 4.9 43 241-283 299-344 (347)
44 PF06679 DUF1180: Protein of u 48.5 1.5E+02 0.0033 26.0 8.7 28 253-281 91-118 (163)
45 PF03908 Sec20: Sec20; InterP 48.0 21 0.00046 27.7 3.1 24 255-278 67-90 (92)
46 PF07438 DUF1514: Protein of u 47.6 24 0.00052 26.3 3.1 15 274-288 36-50 (66)
47 COG4499 Predicted membrane pro 40.8 20 0.00042 35.7 2.3 21 256-276 216-236 (434)
48 PF05763 DUF835: Protein of un 38.8 27 0.00059 29.4 2.6 23 270-292 61-83 (136)
49 PF13807 GNVR: G-rich domain o 37.3 44 0.00096 25.2 3.4 27 253-279 55-82 (82)
50 PRK10381 LPS O-antigen length 36.5 58 0.0013 32.1 4.8 39 245-283 325-366 (377)
51 PF13544 N_methyl_2: Type IV p 36.3 39 0.00085 21.2 2.4 24 252-275 8-31 (31)
52 PHA03326 nuclear egress membra 35.2 1.6E+02 0.0035 27.8 7.1 31 257-287 243-273 (275)
53 PF05808 Podoplanin: Podoplani 33.3 14 0.00031 32.3 0.0 17 263-279 140-156 (162)
54 cd00421 intradiol_dioxygenase 33.3 54 0.0012 27.7 3.6 25 57-81 65-90 (146)
55 COG4333 Uncharacterized protei 31.9 30 0.00066 29.9 1.8 16 276-291 61-76 (167)
56 COG3114 CcmD Heme exporter pro 31.9 56 0.0012 24.4 2.9 17 260-276 18-34 (67)
57 cd03457 intradiol_dioxygenase_ 30.9 60 0.0013 28.9 3.6 25 57-81 86-110 (188)
58 PRK13468 F0F1 ATP synthase sub 30.5 34 0.00073 26.6 1.7 19 262-280 63-81 (82)
59 PF15176 LRR19-TM: Leucine-ric 28.9 58 0.0013 26.4 2.8 12 275-286 42-53 (102)
60 PRK15471 chain length determin 28.8 86 0.0019 30.3 4.6 38 246-283 282-322 (325)
61 PF01618 MotA_ExbB: MotA/TolQ/ 28.7 78 0.0017 26.2 3.8 24 260-283 103-126 (139)
62 PF09472 MtrF: Tetrahydrometha 27.4 76 0.0017 23.6 3.0 19 263-281 45-63 (64)
63 COG4537 ComGC Competence prote 27.0 46 0.00099 27.1 1.9 21 256-276 10-33 (107)
64 TIGR02848 spore_III_AC stage I 27.0 74 0.0016 23.7 2.9 20 259-278 6-25 (64)
65 PF04964 Flp_Fap: Flp/Fap pili 26.4 71 0.0015 21.9 2.6 23 255-277 3-25 (46)
66 CHL00061 atpH ATP synthase CF0 26.3 40 0.00088 26.1 1.5 17 263-279 64-80 (81)
67 PRK00523 hypothetical protein; 25.8 95 0.0021 23.7 3.3 8 276-283 30-37 (72)
68 TIGR02929 anfG_nitrog Fe-only 25.7 3.4E+02 0.0074 22.3 6.7 72 92-163 18-93 (109)
69 PF07664 FeoB_C: Ferrous iron 24.6 94 0.002 21.7 3.0 31 260-290 3-34 (54)
70 PHA01735 hypothetical protein 24.4 49 0.0011 25.2 1.5 17 277-293 39-55 (76)
71 PF01333 Apocytochr_F_C: Apocy 24.3 94 0.002 25.8 3.3 30 249-278 76-105 (118)
72 COG3763 Uncharacterized protei 24.2 1.2E+02 0.0026 23.1 3.5 12 262-273 5-16 (71)
73 TIGR02930 vnfG_nitrog V-contai 24.2 3.7E+02 0.0081 22.1 6.7 72 92-163 18-93 (109)
74 PF10617 DUF2474: Protein of u 24.1 2.1E+02 0.0045 19.4 4.4 35 252-286 1-39 (40)
75 PF06686 SpoIIIAC: Stage III s 24.0 1E+02 0.0023 21.8 3.2 21 259-279 2-22 (58)
76 PRK11053 dihydropteridine redu 23.6 1.3E+02 0.0028 26.6 4.4 32 259-292 135-166 (217)
77 cd03459 3,4-PCD Protocatechuat 23.6 1E+02 0.0022 26.7 3.6 25 57-81 72-101 (158)
78 PF05371 Phage_Coat_Gp8: Phage 23.4 1.4E+02 0.003 21.4 3.5 22 259-280 26-49 (52)
79 PRK06654 fliL flagellar basal 22.8 91 0.002 27.8 3.2 18 257-274 31-48 (181)
80 PF06113 BRE: Brain and reprod 22.5 1.5E+02 0.0033 28.9 4.9 36 39-80 52-87 (333)
81 PF12652 CotJB: CotJB protein; 21.7 2.8E+02 0.0061 21.2 5.3 41 105-146 14-54 (78)
82 PF14975 DUF4512: Domain of un 21.5 78 0.0017 25.0 2.2 16 267-282 6-21 (88)
83 PF04971 Lysis_S: Lysis protei 21.5 75 0.0016 24.0 2.0 15 262-276 33-47 (68)
84 TIGR03322 alt_F1F0_F0_C altern 21.3 1.3E+02 0.0027 23.7 3.4 20 262-281 64-83 (86)
85 COG0811 TolQ Biopolymer transp 21.0 97 0.0021 28.0 3.1 26 257-282 164-189 (216)
86 PF03139 AnfG_VnfG: Vanadium/a 20.5 4.5E+02 0.0098 21.7 6.5 72 92-163 21-96 (112)
87 COG4298 Uncharacterized protei 20.5 1.1E+02 0.0023 24.3 2.8 17 258-274 17-33 (95)
No 1
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-50 Score=358.32 Aligned_cols=289 Identities=44% Similarity=0.672 Sum_probs=238.1
Q ss_pred CCCcCCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719 1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL 80 (293)
Q Consensus 1 ma~~~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~ 80 (293)
|++.+||..|++.|||+||.++|+ +|...+.+.|.++|+|+|+++|+||.||-||||+||.+|.||.|||++||.+.++
T Consensus 1 ~m~erYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLL 79 (314)
T KOG0428|consen 1 MMEERYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILL 79 (314)
T ss_pred CchhhhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEE
Confidence 777899999999999999999999 7888999999999999999999999999999999999999999999999999999
Q ss_pred c--------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCCCCCChHHHHHHHHHhHHHHHHHHHHHHhh-hCChhHH
Q 022719 81 T--------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPK-FGTPERQ 151 (293)
Q Consensus 81 T--------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~~P~~~l~A~~~~~~dre~f~~kare~~~k-ya~~~~~ 151 (293)
| .+|||+|.++||+.|.|+|+|++.|+.|+.+|...|+.++++++|-.++|+.+++++++|.+| |++.-++
T Consensus 80 TpNGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~GAlGSlDYpp~ERr~LAkkS~e~~ck~cGs~mk~ 159 (314)
T KOG0428|consen 80 TPNGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPEGALGSLDYPPEERRALAKKSQEFCCKGCGSAMKD 159 (314)
T ss_pred cCCCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCCCccccCcCCHHHHHHHHHhhcccCccccCChhhh
Confidence 9 689999999999999999999999999999999999999999999999999999999999988 8888888
Q ss_pred HHH----H-HHHHHHhcCCCCCCCCCCCCC---CCCCCccccccccccccccccCCCCCCC--ccccccccccc-ccccc
Q 022719 152 KLI----D-EIHEYMLSKAPPVPQLSTCEE---QPGNREGEAQASSIDAMVTGAGEGLPAP--VGDRIIEEVQE-DLPAS 220 (293)
Q Consensus 152 ~l~----~-e~~~~~~~~~~~vp~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~ 220 (293)
.++ + ++|++...+...++-....|. ....+++..++++..++.....++.+++ ..+.-.++.+| ..+|+
T Consensus 160 ~llp~~~d~~~~Q~~eaK~la~q~~f~~E~~~~~k~vsea~~q~~p~et~~~~e~~s~~T~~~~~~~~~a~~~e~~~~Vn 239 (314)
T KOG0428|consen 160 VLLPLKSDSDSSQAQEAKELARQISFKAEVNSSGKTVSEADLQHSPSETDLQDEIASASTSYGLQNSSAASFHEPTQPVN 239 (314)
T ss_pred eeeeccCCchHHHHHHHHHHhhcCcchhhhccccchhhhhhccCCcccccchhhhhcccccccccchhhhhhcCCCcccc
Confidence 887 4 899998888888887777443 3346667778888877777766776653 22222223221 44556
Q ss_pred cCCCCCCCC---CCcccCCCCccccCCCCCccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccccC
Q 022719 221 MNPNPVVAG---TSREVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG 292 (293)
Q Consensus 221 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (293)
.|.+...++ .++.+...++..-+|+...+..+++-|+ +||+++||||||++|++|||.++|||-.-|||.
T Consensus 240 ~n~S~vP~~~aqpavq~~~~~sp~v~Q~hapR~a~t~~d~--~t~l~viltiAl~~lif~~~~lan~y~~dfmd~ 312 (314)
T KOG0428|consen 240 KNTSMVPQRRAQPAVQRRLSTSPDVIQGHAPRDAHTDHDG--STVLIVILTIALAALIFRRIYLANEYIFDFMDF 312 (314)
T ss_pred cccccCchhcccccccceecCCchhhhccCcccccCCCCC--ceehHHHHHHHHHHHHHHHHHHhccceeccccc
Confidence 655544422 1222223344334444444667778776 999999999999999999999999999999974
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-39 Score=269.76 Aligned_cols=133 Identities=32% Similarity=0.709 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------
Q 022719 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------- 81 (293)
Q Consensus 12 a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------- 81 (293)
+.+||.+|+++|++++++|+.+.+.++|+++|+++|.||.|||||||+|++.|.||++||++||+|+|+|
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719 82 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT 147 (293)
Q Consensus 82 G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~ 147 (293)
|+||+|||+ +.|+|+++|+.||.+|++||.+ ||++++. .+..|+.|+.+|.+.||+|+++|+.
T Consensus 82 G~IclDILk---~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 82 GRICLDILK---DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccchHHhhh---ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 999999998 7899999999999999999976 8888876 3677789999999999999999985
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-38 Score=271.10 Aligned_cols=136 Identities=33% Similarity=0.747 Sum_probs=127.0
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------ 81 (293)
Q Consensus 9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~-di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------ 81 (293)
+..+.+||++|++.|++++++++.+.|..+ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|+|
T Consensus 3 s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN 82 (153)
T COG5078 3 SPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN 82 (153)
T ss_pred chhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence 444999999999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred ----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719 82 ----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT 147 (293)
Q Consensus 82 ----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~ 147 (293)
|+|||+||+ ++|+|+++|++||++|++||.+ |++++++ |+.++.+|+++|.++||+++++|+.
T Consensus 83 V~~~G~vCLdIL~---~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 83 VDPSGNVCLDILK---DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred cCCCCCChhHHHh---CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999998 8999999999999999999976 6667665 5677789999999999999999864
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.7e-35 Score=253.74 Aligned_cols=134 Identities=30% Similarity=0.592 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------
Q 022719 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------- 81 (293)
Q Consensus 12 a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------- 81 (293)
+.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|+|
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719 82 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGTP 148 (293)
Q Consensus 82 G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~ 148 (293)
|.||+++|+ +.|+|++||++||.+|++||.+ +|+++++ ++.+|.+|++.|.++||+|+++|+..
T Consensus 83 G~iCl~iL~---~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILK---DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCc---ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 999999997 8899999999999999999965 7777776 57778899999999999999999863
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.3e-35 Score=250.66 Aligned_cols=132 Identities=33% Similarity=0.682 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------
Q 022719 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT---------- 81 (293)
Q Consensus 12 a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T---------- 81 (293)
+.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719 82 TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG 146 (293)
Q Consensus 82 G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya 146 (293)
|.||+++|+ +.|+|+++|++||.+|++||.+ +++++++ ++.++.+|+++|.++||+|+++|+
T Consensus 82 G~iCl~il~---~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 82 GSICLDILR---DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CEEEcccCc---CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 999999997 7899999999999999999965 6677766 468888999999999999999986
No 6
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-35 Score=242.29 Aligned_cols=134 Identities=31% Similarity=0.683 Sum_probs=125.9
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec------
Q 022719 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------ 81 (293)
Q Consensus 8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------ 81 (293)
||-+|.|||++|++.|+++++.||+..|.++|++.|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|++
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719 82 ----TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK 144 (293)
Q Consensus 82 ----G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k 144 (293)
|.+||+||. ..|+|.|++..||.+||+||.+ ||+++.| |+.++.+++++|.+++++.+.+
T Consensus 81 vya~G~iClDiLq---NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 81 VYADGSICLDILQ---NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred cCCCCcchHHHHh---cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence 999999998 7999999999999999999965 6666655 5788889999999999988654
No 7
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.2e-32 Score=240.63 Aligned_cols=149 Identities=39% Similarity=0.805 Sum_probs=130.1
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------- 81 (293)
Q Consensus 9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------- 81 (293)
+..++|||+|||+.|+++|+++|.++|..+||.+||.+|.||+||||+||.|+..|.||.+||++||.|+++|
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFkt 82 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFKT 82 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCceec
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCCCCCChHHHHHHHHHhHHHHHHHHHHHHhhhCChhHHHHHHHHHHH
Q 022719 82 -TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEY 160 (293)
Q Consensus 82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~~P~~~l~A~~~~~~dre~f~~kare~~~kya~~~~~~l~~e~~~~ 160 (293)
.++||+|.++||+.|+|.|++.+||.+|.++|.++ ....++..-...+++.|++.+..+- +....+.++..|+.+.
T Consensus 83 ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~-~pTtGSI~tS~~~kr~lA~~SlaFN--~kn~~F~~lFPE~Vee 159 (244)
T KOG0894|consen 83 NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED-SPTTGSIETSDQDKRMLAKSSLAFN--LKNPKFCELFPEVVEE 159 (244)
T ss_pred CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC-CCccCcccccHHHHHHHHHhhhhhc--cCChHHHHHhHHHHHH
Confidence 68999999999999999999999999999999653 2234444455678899999887766 4455566666665544
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.6e-32 Score=226.35 Aligned_cols=139 Identities=24% Similarity=0.533 Sum_probs=125.8
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-
Q 022719 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT- 81 (293)
Q Consensus 8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~~-----~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T- 81 (293)
||..++.||+.|-+.|.++.+.||++.|.. .|++.|+|.|.|++||+||||.|.+++.||++||++||+++|.+
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 567789999999999999999999999973 48999999999999999999999999999999999999999999
Q ss_pred ---------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719 82 ---------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT 147 (293)
Q Consensus 82 ---------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~ 147 (293)
|.|||+||+.. .+|+|+.||.+||++|+.||.+ |+.++-+ |...|.+||..|.++||.++++|+.
T Consensus 81 l~HPNVypsgtVcLsiL~e~-~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEE-KDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcCCCCcEehhhhccc-cCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999842 4599999999999999999955 5555544 5678889999999999999998874
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.4e-32 Score=234.92 Aligned_cols=152 Identities=31% Similarity=0.536 Sum_probs=136.1
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---
Q 022719 8 LKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--- 81 (293)
Q Consensus 8 ms~~a~kRL~kElk~L~~~p---~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--- 81 (293)
|++ +.+||.+|++++.+++ -.||.+....+|+.+..+.|.||+|||||||+|.+.|.+|++|||+||+|+|.|
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 677 8999999999999988 679999999999999999999999999999999999999999999999999999
Q ss_pred --------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHHH--HHHHHHhHHHHHHHHHHHHhhhCCh--
Q 022719 82 --------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS--LDYKKEERRALAIKSREAAPKFGTP-- 148 (293)
Q Consensus 82 --------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~A--~~~~~~dre~f~~kare~~~kya~~-- 148 (293)
|.|||+||+ +.|.+++|++++|++||++|.. +|.++..| +..|.++++.|.+.+|.|+..|++.
T Consensus 80 HPnVSs~tGaICLDilk---d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~~~ 156 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILK---DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGGRL 156 (200)
T ss_pred cCCCCcccccchhhhhh---cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCC
Confidence 999999998 8999999999999999999965 66666554 4555699999999999999999865
Q ss_pred ----hHHHHHHHHHHHHhc
Q 022719 149 ----ERQKLIDEIHEYMLS 163 (293)
Q Consensus 149 ----~~~~l~~e~~~~~~~ 163 (293)
.+++.++.+.+..-+
T Consensus 157 ~~~~~~~~~v~~l~~mGf~ 175 (200)
T KOG0418|consen 157 PDDPWDKKKVDSLIEMGFS 175 (200)
T ss_pred CCCchhHHHHHHHHHhccc
Confidence 356677777766543
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.5e-31 Score=216.45 Aligned_cols=137 Identities=31% Similarity=0.698 Sum_probs=123.1
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----
Q 022719 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----- 81 (293)
Q Consensus 8 ms~~a~kRL~kElk~L~~~p~~gi~~~p~-~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----- 81 (293)
|+..|+|||++||++|..++|+||.+.|. ++|+|+|.|.|.||++|+|+||+|..++.||.|||.+||+++|..
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 56789999999999999999999999997 679999999999999999999999999999999999999999987
Q ss_pred -----ccceeccCCCCC----------CCCCCcccHHHHHHHHHHcCCCCCCCh----HHHHHHHHHhHHHHHHHHHHHH
Q 022719 82 -----TKICLSISNHHP----------EHWQPSWSVRTALVALIAFMPTNPNGA----LGSLDYKKEERRALAIKSREAA 142 (293)
Q Consensus 82 -----G~ICLsiL~~~p----------e~W~P~~sI~~VL~~I~~lL~~~P~~~----l~A~~~~~~dre~f~~kare~~ 142 (293)
|+||++||.... +.|+|.++++.||+++.+|| ..|++. ..|..++.+||++|.+.+|..+
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SML-aEPNdESgANvdA~~mWRe~R~ef~~i~~~lv 159 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSML-AEPNDESGANVDACKMWREDREEFEKIAKRLV 159 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHH-cCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence 999999996431 68999999999999999999 444433 3367889999999999999888
Q ss_pred hhh
Q 022719 143 PKF 145 (293)
Q Consensus 143 ~ky 145 (293)
.|-
T Consensus 160 rKt 162 (165)
T KOG0426|consen 160 RKT 162 (165)
T ss_pred HHh
Confidence 763
No 11
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=219.52 Aligned_cols=135 Identities=30% Similarity=0.618 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCC-CCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------
Q 022719 11 PAVKRILQEVKEMQSNPSDDFMSLPLE-ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------- 81 (293)
Q Consensus 11 ~a~kRL~kElk~L~~~p~~gi~~~p~~-~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------- 81 (293)
.+..-|+++|++|+++|..|+.+...+ .|+++|.+.|.||++|+||||+|+.++.||.|||++||+++|+|
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy 84 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY 84 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence 367889999999999999999997775 49999999999999999999999999999999999999999999
Q ss_pred --ccceeccCCCCC----------CCCCCcccHHHHHHHHHHcCCC----CCCChHHHHHHHHHhHHHHHHHHHHHHhhh
Q 022719 82 --TKICLSISNHHP----------EHWQPSWSVRTALVALIAFMPT----NPNGALGSLDYKKEERRALAIKSREAAPKF 145 (293)
Q Consensus 82 --G~ICLsiL~~~p----------e~W~P~~sI~~VL~~I~~lL~~----~P~~~l~A~~~~~~dre~f~~kare~~~ky 145 (293)
|++|++||.... +.|.|.+|+++||++|++||.+ .|.|.+ |+..+.+++++|.+++++++.+.
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVD-Aa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVD-AAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchH-HHHHHhhCHHHHHHHHHHHHHHH
Confidence 999999996532 6899999999999999999943 233333 45556688999999999998765
Q ss_pred C
Q 022719 146 G 146 (293)
Q Consensus 146 a 146 (293)
.
T Consensus 164 ~ 164 (171)
T KOG0425|consen 164 Q 164 (171)
T ss_pred H
Confidence 3
No 12
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.97 E-value=1e-30 Score=219.81 Aligned_cols=126 Identities=40% Similarity=0.830 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------cc
Q 022719 15 RILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------TK 83 (293)
Q Consensus 15 RL~kElk~L~~~p~~gi~~~p~~~-di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G~ 83 (293)
||++|+++|+++++.|+.+.+.++ |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.| |.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999986 9999999999999999999999999999999999999999999 99
Q ss_pred ceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHH
Q 022719 84 ICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA 142 (293)
Q Consensus 84 ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~ 142 (293)
||+++|+ ++.|+|.++|.+||.+|++||.+ +++++.+ ++.++.+|+++|.++||+|.
T Consensus 81 icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILN--PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGT--TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhh--cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 9999997 24699999999999999999943 4444444 45777899999999999873
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.97 E-value=5.5e-30 Score=215.77 Aligned_cols=127 Identities=40% Similarity=0.806 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------cc
Q 022719 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------TK 83 (293)
Q Consensus 14 kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G~ 83 (293)
|||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||.|+|.+ |.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred ceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHH
Q 022719 84 ICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAA 142 (293)
Q Consensus 84 ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~ 142 (293)
||+++|.. +.|+|+++|.+||.+|+++|.+ +++++.+ |+.++.+|++.|.++|++|+
T Consensus 82 icl~~l~~--~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKT--HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCC--CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 99999982 3499999999999999999964 4444444 56777899999999999874
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.96 E-value=6.7e-29 Score=210.09 Aligned_cols=131 Identities=36% Similarity=0.756 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec----------c
Q 022719 14 KRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------T 82 (293)
Q Consensus 14 kRL~kElk~L~~~p~~gi~~~p~~~-di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------G 82 (293)
+||++|+++|++++++|+.+.+.++ |+++|+++|.||.+|||+||.|++.|.||++||++||+|+|.+ |
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998875 9999999999999999999999999999999999999999999 9
Q ss_pred cceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719 83 KICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG 146 (293)
Q Consensus 83 ~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya 146 (293)
.||+++|. ++.|+|.+++++||.+|+++|.+ +++++.+ |+.++.++++.|.++++++++||.
T Consensus 81 ~icl~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILK--QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcC--CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999996 26899999999999999999955 4455444 567778999999999999999874
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-29 Score=209.18 Aligned_cols=132 Identities=26% Similarity=0.538 Sum_probs=119.6
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-------
Q 022719 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT------- 81 (293)
Q Consensus 9 s~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T------- 81 (293)
.....|||++|+..|.....+||+++|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhh
Q 022719 82 ---TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPK 144 (293)
Q Consensus 82 ---G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~k 144 (293)
|.|||+||+ +.|+..|.+++||++||+||-+ |-..+++ |++++ .|.++|.+.+.++-++
T Consensus 107 D~~GnIcLDILk---dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW-~d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 107 DLSGNICLDILK---DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELW-SDQEEYKKYLEALYKE 171 (175)
T ss_pred cccccchHHHHH---HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHh-cCHHHHHHHHHHHhhc
Confidence 999999998 9999999999999999999944 3345666 47888 5999999888665443
No 16
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-27 Score=203.45 Aligned_cols=143 Identities=28% Similarity=0.527 Sum_probs=133.5
Q ss_pred CCCcCCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719 1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL 80 (293)
Q Consensus 1 ma~~~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~ 80 (293)
|+ ...|...-.+|.|.+|++.|..+||.||.+.++++|++...+.|.||.||||++|+|++.+.+..|||++||+-+|+
T Consensus 1 m~-snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFl 79 (223)
T KOG0423|consen 1 MA-SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFL 79 (223)
T ss_pred CC-cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceee
Confidence 66 45889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCC
Q 022719 81 T----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFGT 147 (293)
Q Consensus 81 T----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya~ 147 (293)
| |.||++.|+ .+|+|+++|+.||..|.+||.+ ||+++++ |..++.+++++|.+.+
T Consensus 80 TKIFHPNVaaNGEICVNtLK---kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rA--------- 147 (223)
T KOG0423|consen 80 TKIFHPNVAANGEICVNTLK---KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRA--------- 147 (223)
T ss_pred eeeccCCcccCceehhhhhh---cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHH---------
Confidence 9 999999998 8899999999999999999976 9998887 4566669999999998
Q ss_pred hhHHHHHHHHHHH
Q 022719 148 PERQKLIDEIHEY 160 (293)
Q Consensus 148 ~~~~~l~~e~~~~ 160 (293)
+++++||+.
T Consensus 148 ----Rl~TeIHa~ 156 (223)
T KOG0423|consen 148 ----RLYTEIHAK 156 (223)
T ss_pred ----HHHHHhhcC
Confidence 688899977
No 17
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.9e-25 Score=185.90 Aligned_cols=134 Identities=27% Similarity=0.521 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhhCCCCCeEE-ecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719 12 AVKRILQEVKEMQSNPSDDFMS-LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------- 81 (293)
Q Consensus 12 a~kRL~kElk~L~~~p~~gi~~-~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------- 81 (293)
+.+||++|+.+|++++...+.- ..++.|++.|++.|. |.+-||..|.|+++|.||.+|||+||+|.|.|
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 6799999999999998775543 445789999999999 89999999999999999999999999999999
Q ss_pred -ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHHH--HHHHHHhHHHHHHHHHHHHhhhCCh
Q 022719 82 -TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS--LDYKKEERRALAIKSREAAPKFGTP 148 (293)
Q Consensus 82 -G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~A--~~~~~~dre~f~~kare~~~kya~~ 148 (293)
|.+|+.|+.. |.|+|...+++||..|..++.+ +|.+++.+ +..|.+|+.+|.+++.+|++||+.+
T Consensus 82 ~gqvClPiis~--EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 82 KGQVCLPIISA--ENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred CCceeeeeeec--ccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 9999999985 8999999999999999999965 66777663 5666799999999999999999865
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=186.04 Aligned_cols=132 Identities=26% Similarity=0.568 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----------
Q 022719 13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------- 81 (293)
Q Consensus 13 ~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------- 81 (293)
-|||..|+..|... ++.+....+++.++++.+.||.+|||+||+|++++.+|++|||+.|+|.|++
T Consensus 5 ~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~S 81 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEAS 81 (189)
T ss_pred ccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhcc
Confidence 48999999999884 4577778888999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCCCCCCCcccHHHHHHHHHHcCC--CCCCChHH--HHHHHHHhHHHHHHHHHHHHhhhCChhH
Q 022719 82 TKICLSISNHHPEHWQPSWSVRTALVALIAFMP--TNPNGALG--SLDYKKEERRALAIKSREAAPKFGTPER 150 (293)
Q Consensus 82 G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~--~~P~~~l~--A~~~~~~dre~f~~kare~~~kya~~~~ 150 (293)
|.|||++++ ..|+|.+.+..|+..+.-.|. .||.+++| |+.++..+++.|.+++|++++||+.+..
T Consensus 82 GsVCLDViN---QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~~~ 151 (189)
T KOG0416|consen 82 GSVCLDVIN---QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATPEA 151 (189)
T ss_pred CccHHHHHh---hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcChhh
Confidence 999999999 789999999999987665443 37788877 4666679999999999999999998774
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-23 Score=179.57 Aligned_cols=134 Identities=23% Similarity=0.451 Sum_probs=114.0
Q ss_pred CCChHHHHHHHHHHHHHhhCCCCCeEE----ecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-
Q 022719 7 NLKNPAVKRILQEVKEMQSNPSDDFMS----LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT- 81 (293)
Q Consensus 7 ~ms~~a~kRL~kElk~L~~~p~~gi~~----~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T- 81 (293)
...+.+.-||.+|+.++.- |+++.. .+.+-+..+++++|. |.++.|+||.|.|.+.+|+.||++||+|+|+|
T Consensus 24 ~~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk 100 (184)
T KOG0420|consen 24 KKVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK 100 (184)
T ss_pred ccccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence 3456678888888888854 555542 233333336999999 99999999999999999999999999999999
Q ss_pred ---------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC-CCCChHH--HHHHHHHhHHHHHHHHHHHHhhhC
Q 022719 82 ---------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEERRALAIKSREAAPKFG 146 (293)
Q Consensus 82 ---------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~--A~~~~~~dre~f~~kare~~~kya 146 (293)
|.|||+||+ ++|+|+.+|.+|+.+|+.||.+ +|+|++| |++.+.+|++.|..+||+....++
T Consensus 101 V~HPNId~~GnVCLnILR---edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 101 VYHPNIDLDGNVCLNILR---EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred cccCCcCCcchHHHHHHH---hcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 999999999 8899999999999999999977 8889887 678888999999999999876654
No 20
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.7e-22 Score=166.79 Aligned_cols=107 Identities=26% Similarity=0.622 Sum_probs=100.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---
Q 022719 5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--- 81 (293)
Q Consensus 5 ~~~ms~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--- 81 (293)
+--|+..+.+||+||+.+|+.+||.|+... ..+|+..|.+-+.|.+||.|+|..|.+.+.||+.||+..|.|.|..
T Consensus 9 rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P 87 (161)
T KOG0427|consen 9 RKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP 87 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence 345778899999999999999999999877 7789999999999999999999999999999999999999999998
Q ss_pred --------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCC
Q 022719 82 --------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 115 (293)
Q Consensus 82 --------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~ 115 (293)
|.|||+||. ++|+|++++.+|.++|.+||.+
T Consensus 88 ~HPHiYSNGHICL~iL~---d~WsPAmsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 88 LHPHIYSNGHICLDILY---DSWSPAMSVQSVCLSILSMLSS 126 (161)
T ss_pred CCCceecCCeEEEEeec---ccCCcchhhHHHHHHHHHHHcc
Confidence 999999998 9999999999999999999954
No 21
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7.1e-15 Score=131.18 Aligned_cols=133 Identities=18% Similarity=0.262 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCC--CCCCeeeeec----------
Q 022719 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP--FKPPSFMLLT---------- 81 (293)
Q Consensus 14 kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP--~~PP~v~F~T---------- 81 (293)
-.|+.|+..+.+.+.+||++.|+..|-+.|.++|++ +.+.|.||+|+|.|.+|++|| ..-|+|.|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 357778888888999999999999999999999996 556999999999999999999 3689999999
Q ss_pred -ccceeccCCCCCCCCCC-cccHHHHHHHHHHcCCCCCCCh------HHHHHHHHHhHHHHHHHHHHHHhhhCChhHH
Q 022719 82 -TKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNPNGA------LGSLDYKKEERRALAIKSREAAPKFGTPERQ 151 (293)
Q Consensus 82 -G~ICLsiL~~~pe~W~P-~~sI~~VL~~I~~lL~~~P~~~------l~A~~~~~~dre~f~~kare~~~kya~~~~~ 151 (293)
+..|++- .+++ |+. ..+|++||++|+.+|.+ |+.. -+|+.+|.+++++|.++++++++.+-+..|+
T Consensus 101 skeLdl~r--af~e-WRk~ehhiwqvL~ylqriF~d-pd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~~iyD 174 (258)
T KOG0429|consen 101 SKELDLNR--AFPE-WRKEEHHIWQVLVYLQRIFYD-PDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRSMIYD 174 (258)
T ss_pred ccceeHhh--hhhh-hhccccHHHHHHHHHHHHhcC-cccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 5555543 3455 755 78999999999999943 3321 2366778899999999999999876655544
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.5e-15 Score=158.96 Aligned_cols=105 Identities=26% Similarity=0.472 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec-----------
Q 022719 13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT----------- 81 (293)
Q Consensus 13 ~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T----------- 81 (293)
.+..+.|++-|..+-|.||+++..++.+....+.|.||.+|||.+|.|.|.|.||++||..||.|...+
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~ 932 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE 932 (1101)
T ss_pred HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc
Confidence 445566777788888999999999999999999999999999999999999999999999999999988
Q ss_pred -ccceeccCCCC----CCCCCCcccHHHHHHHHHHcCCC-CC
Q 022719 82 -TKICLSISNHH----PEHWQPSWSVRTALVALIAFMPT-NP 117 (293)
Q Consensus 82 -G~ICLsiL~~~----pe~W~P~~sI~~VL~~I~~lL~~-~P 117 (293)
|+|||++|++| -+-|+|+.+|.+||++||.|+.. .|
T Consensus 933 ~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~p 974 (1101)
T KOG0895|consen 933 DGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEP 974 (1101)
T ss_pred ccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccc
Confidence 99999999986 37899999999999999999743 44
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.6e-13 Score=142.52 Aligned_cols=106 Identities=26% Similarity=0.466 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec---------
Q 022719 11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------- 81 (293)
Q Consensus 11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------- 81 (293)
-..+|+++|++.|.++.+.|+++.|.+.++...++.|.||.||||++|+|.|+|.||..||..||.+.++|
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----ccceeccCCCCC----CCCCCc-ccHHHHHHHHHHcCCCC
Q 022719 82 ----TKICLSISNHHP----EHWQPS-WSVRTALVALIAFMPTN 116 (293)
Q Consensus 82 ----G~ICLsiL~~~p----e~W~P~-~sI~~VL~~I~~lL~~~ 116 (293)
|+||+++|..|- +.|+|. .+|.++|..|+.++.++
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 999999998762 689997 89999999999998554
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.4e-10 Score=92.74 Aligned_cols=96 Identities=28% Similarity=0.455 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEec--CCCC--ceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------
Q 022719 14 KRILQEVKEMQSNPSDDFMSLP--LEEN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT-------- 81 (293)
Q Consensus 14 kRL~kElk~L~~~p~~gi~~~p--~~~d--i~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T-------- 81 (293)
-||++|+..=++--.+|....- +.+| +..|...|.||+.|+||+-+|.++|.+..+||..||.|+|.+
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 4788888877654444443322 2334 568999999999999999999999999999999999999999
Q ss_pred ---ccc---eeccCCCCCCCCCCcccHHHHHHHHHHcC
Q 022719 82 ---TKI---CLSISNHHPEHWQPSWSVRTALVALIAFM 113 (293)
Q Consensus 82 ---G~I---CLsiL~~~pe~W~P~~sI~~VL~~I~~lL 113 (293)
|.| -+..| ..|+-.+++..+|..++.+|
T Consensus 88 ~~~g~Vd~~~i~~L----~~W~~~y~~~~vl~~lr~~m 121 (138)
T KOG0896|consen 88 SSNGVVDPRDITVL----ARWQRSYSIKMVLGQLRKEM 121 (138)
T ss_pred cCCCccCccccchh----hcccccchhhHHHHhhhHHH
Confidence 222 13334 58999999999999998765
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.5e-05 Score=65.15 Aligned_cols=53 Identities=17% Similarity=0.411 Sum_probs=48.1
Q ss_pred EEEEeeCCCCCCCCCCeeeeec-----------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCC
Q 022719 60 YHGRIQLPAEYPFKPPSFMLLT-----------TKICLSISNHHPEHWQPSWSVRTALVALIAFMP 114 (293)
Q Consensus 60 F~~~I~fP~dYP~~PP~v~F~T-----------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~ 114 (293)
.-+.+.|++|||+.||.++... |.||+.+|. +++|+..++|+.++++|-..+.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt--~qgwssay~Ve~vi~qiaatlV 76 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT--KQGWSSAYEVERVIMQIAATLV 76 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc--cccccchhhHHHHHHHHHHHhh
Confidence 3567889999999999999888 899999998 5899999999999999999884
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.31 E-value=0.00046 Score=57.84 Aligned_cols=62 Identities=24% Similarity=0.519 Sum_probs=51.3
Q ss_pred CCCeEEEEeeCCCCCCCCCCeeeeec-------------ccceeccCCCCCCCCCCcccHHHHHHHHHHcCCCCC
Q 022719 56 EGGIYHGRIQLPAEYPFKPPSFMLLT-------------TKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNP 117 (293)
Q Consensus 56 eGG~F~~~I~fP~dYP~~PP~v~F~T-------------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL~~~P 117 (293)
.|+.|.+.|.||++||..||.|.... |.+|+.--....+.|.|...+.++|...+.+|.+.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~~~ 108 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLEDGL 108 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999997775 999993222223899999999999999999995433
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.22 E-value=0.00036 Score=57.92 Aligned_cols=71 Identities=24% Similarity=0.473 Sum_probs=50.3
Q ss_pred CceEEEEEEeCCCCCCCCCCeEE--EEeeCCCCCCCCCCeeeeec---------------ccceeccCCCCCCCCCC-cc
Q 022719 39 NIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLLT---------------TKICLSISNHHPEHWQP-SW 100 (293)
Q Consensus 39 di~~W~~~I~GP~~TpYeGG~F~--~~I~fP~dYP~~PP~v~F~T---------------G~ICLsiL~~~pe~W~P-~~ 100 (293)
.+....++|. -.|+|..|. +.|.||.+||..||.|...- |+|.+..|. .|++ ..
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~----~W~~~~s 102 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ----NWNPPSS 102 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH----T--TTTS
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc----cCCCCCC
Confidence 4556666664 247888885 67889999999999997655 888888884 7887 88
Q ss_pred cHHHHHHHHHHcCCCCC
Q 022719 101 SVRTALVALIAFMPTNP 117 (293)
Q Consensus 101 sI~~VL~~I~~lL~~~P 117 (293)
++.+++..+...|.++|
T Consensus 103 ~L~~lv~~l~~~F~~~p 119 (121)
T PF05743_consen 103 NLVDLVQELQAVFSEEP 119 (121)
T ss_dssp -HHHHHHHHHHCCCHS-
T ss_pred CHHHHHHHHHHHHhHcC
Confidence 99999999998885543
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.79 E-value=0.00065 Score=57.76 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHhh-------CCCCCeEEecCCCCceEEEEEEeCCCCCCCCC--CeEEEEeeCCCCCCCCCCeeeee
Q 022719 10 NPAVKRILQEVKEMQS-------NPSDDFMSLPLEENIFEWQFAIRGPGDTEFEG--GIYHGRIQLPAEYPFKPPSFMLL 80 (293)
Q Consensus 10 ~~a~kRL~kElk~L~~-------~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeG--G~F~~~I~fP~dYP~~PP~v~F~ 80 (293)
..-..||..||..|-+ +-...|.+. +..+=+.|.+..-= .|+- --|.+++.+|..||..||.+..-
T Consensus 23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcceecc
Confidence 4567899999998754 112233333 22223444433210 0112 23556677899999999999876
Q ss_pred c-----------ccceeccCCCCCCCC---CCcccHHHHH
Q 022719 81 T-----------TKICLSISNHHPEHW---QPSWSVRTAL 106 (293)
Q Consensus 81 T-----------G~ICLsiL~~~pe~W---~P~~sI~~VL 106 (293)
. |+|||++= +..-| .|.++|...|
T Consensus 98 eLdGKTaKMYRGGkIClt~H--FkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDH--FKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GGTTT-SSBCCCCBB---TT--HHHHHHCTTTT--HHHHH
T ss_pred ccCCchhhhhcCceEeeecc--cchhhhhcCCchhHHHHH
Confidence 6 99999842 12234 3566666654
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.016 Score=48.80 Aligned_cols=87 Identities=23% Similarity=0.404 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCC----------eEEEEeeCCCCCCCCCCeeeee
Q 022719 11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFMLL 80 (293)
Q Consensus 11 ~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG----------~F~~~I~fP~dYP~~PP~v~F~ 80 (293)
.-++||..||+.|-. ++.-+.++-..|.-.=.-++||-|-|. .|.+++.+|-.||-..|.+..-
T Consensus 27 ~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp 100 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP 100 (167)
T ss_pred HHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence 457899999998854 222233333344433344677777663 3556677899999999888665
Q ss_pred c-----------ccceeccCCCCCCCCC---CcccHHHH
Q 022719 81 T-----------TKICLSISNHHPEHWQ---PSWSVRTA 105 (293)
Q Consensus 81 T-----------G~ICLsiL~~~pe~W~---P~~sI~~V 105 (293)
. |+|||.- +++.-|. |..+|...
T Consensus 101 eldgktakmyrggkiclt~--hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 101 ELDGKTAKMYRGGKICLTD--HFKPLWARNVPKFGIAHA 137 (167)
T ss_pred ccCchhhhhhcCceEeecc--ccchhhhhcCcchhHHHH
Confidence 4 9999862 2234452 44555543
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.18 E-value=0.062 Score=42.28 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeC--CCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL 80 (293)
Q Consensus 14 kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~G--P~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~ 80 (293)
.+...|+..|+.--+..+ ......+...+.+.+.+ ...+.-....+++.|.||++||..+|.|.+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~ 71 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLE 71 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEE
Confidence 567788888887554444 23334455566666632 2333444668999999999999999999765
No 31
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.13 Score=49.70 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHHHHhhC-CCCCeEEecCC--CCceEEEEEEeCCCCCCCCCCeEE--EEeeCCCCCCCCCCeeeee
Q 022719 6 YNLKNPAVKRILQEVKEMQSN-PSDDFMSLPLE--ENIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLL 80 (293)
Q Consensus 6 ~~ms~~a~kRL~kElk~L~~~-p~~gi~~~p~~--~di~~W~~~I~GP~~TpYeGG~F~--~~I~fP~dYP~~PP~v~F~ 80 (293)
+|-...+.+.+...+.....- |....+.+.+. .+++...++|. .+|.|..|. +.|.+.+.||+.||.|...
T Consensus 15 ~~~~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~Vn 90 (365)
T KOG2391|consen 15 YNYKDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVN 90 (365)
T ss_pred ccchhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEec
Confidence 344444555555555555443 22234445443 35666666664 467787776 6788999999999999655
Q ss_pred c---------------ccceeccCCCCCCCCCC-cccHHHHHHHHHHcCCC
Q 022719 81 T---------------TKICLSISNHHPEHWQP-SWSVRTALVALIAFMPT 115 (293)
Q Consensus 81 T---------------G~ICLsiL~~~pe~W~P-~~sI~~VL~~I~~lL~~ 115 (293)
- |.|.|..|. .|.+ +.++..++..+...|.+
T Consensus 91 PT~~M~ik~~~hVd~nG~V~LPYLh----~W~~pssdLv~Liq~l~a~f~~ 137 (365)
T KOG2391|consen 91 PTSTMIIKVHEHVDPNGKVYLPYLH----NWDPPSSDLVGLIQELIAAFSE 137 (365)
T ss_pred CCchhhhHHhhccCCCCeEechhhc----cCCCccchHHHHHHHHHHHhcC
Confidence 4 999999995 5875 77888888888888744
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.47 E-value=0.19 Score=39.18 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=31.2
Q ss_pred CCeEEEEeeCCCCCCCCCCeeeeecccceeccCCCCCCCCCCcccHHHHHHHHHHcC
Q 022719 57 GGIYHGRIQLPAEYPFKPPSFMLLTTKICLSISNHHPEHWQPSWSVRTALVALIAFM 113 (293)
Q Consensus 57 GG~F~~~I~fP~dYP~~PP~v~F~TG~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL 113 (293)
.-.+.+.+.||.+||..+|.+.+.+ ..|-+...+..+...|....
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~------------~~~l~~~~~~~l~~~l~~~~ 84 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN------------SEGLSDEQLAELLKKLEEIA 84 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC------------CCCCCHHHHHHHHHHHHHHH
Confidence 4558899999999999999997652 12544455555555555555
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=90.15 E-value=3.1 Score=34.76 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=55.3
Q ss_pred CCeEEecCCCCceEEEEEEeC--CCCCCCCCCeEEEEeeCCCCCCCCCCeeeeec--------ccc--eeccCCCC----
Q 022719 29 DDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT--------TKI--CLSISNHH---- 92 (293)
Q Consensus 29 ~gi~~~p~~~di~~W~~~I~G--P~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~T--------G~I--CLsiL~~~---- 92 (293)
.|+......+.-..|.+ |.| -+.+.|....-.+-|.+|..||..+|.+.+.. |.| |-+....+
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~ 90 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRT 90 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCee
Confidence 35555555455556765 655 45667999999999999999999988776666 444 54333221
Q ss_pred -------CCCCCC-cccHHHHHHHHHHcC
Q 022719 93 -------PEHWQP-SWSVRTALVALIAFM 113 (293)
Q Consensus 93 -------pe~W~P-~~sI~~VL~~I~~lL 113 (293)
...|.| .-+|.+.|..|...|
T Consensus 91 wQrWSRH~~~W~P~~D~l~T~l~~v~~~L 119 (122)
T PF14462_consen 91 WQRWSRHNNPWRPGVDDLWTHLARVEHAL 119 (122)
T ss_pred eeeecCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 245777 346777777776655
No 34
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=75.67 E-value=2.9 Score=39.85 Aligned_cols=88 Identities=19% Similarity=0.394 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeeecccceeccC
Q 022719 10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTTKICLSIS 89 (293)
Q Consensus 10 ~~a~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~TG~ICLsiL 89 (293)
.....+|.+|+..|..+.... .-.++++...++.+. |+ .....++|.+|.+||+++|.+..- .|..+.
T Consensus 98 ~~~ys~ll~EIe~IGW~kl~~---i~~d~~ls~i~l~~~---D~---~R~H~l~l~l~~~yp~~~p~~~~~---~P~~~~ 165 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKLVQ---IQFDDDLSTIKLKIF---DS---SRQHYLELKLPSNYPFEPPSCSLD---LPIPFS 165 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCCEE---EEE-CCCSEEEEEEE---TT---CEEEEEEEETTTTTTTSEEEECS----TTS-HH
T ss_pred cHHHHHHHHHHHHhccccceE---EecCCCccEEEEEEE---cC---CceEEEEEEECCCCCCCCceeeCC---CCcchh
Confidence 345678899999987765322 223677888999998 33 245678899999999999986422 122111
Q ss_pred CCCCCCCCC-cccHHHHHHHHHHcC
Q 022719 90 NHHPEHWQP-SWSVRTALVALIAFM 113 (293)
Q Consensus 90 ~~~pe~W~P-~~sI~~VL~~I~~lL 113 (293)
..|.+ ..++.+++...+..|
T Consensus 166 ----~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 166 ----LSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ----HHHHCHT-SHHHHHHHHHHHH
T ss_pred ----hhhcccccCHHHHHHHHHHHH
Confidence 36888 778888888777666
No 35
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=72.95 E-value=3.3 Score=36.10 Aligned_cols=55 Identities=27% Similarity=0.567 Sum_probs=42.8
Q ss_pred CCeEE---EEeeCCCCCCCCCCeeeeec------------------ccceeccCCCCCCCCCCcccHHHHHHHHHHcC
Q 022719 57 GGIYH---GRIQLPAEYPFKPPSFMLLT------------------TKICLSISNHHPEHWQPSWSVRTALVALIAFM 113 (293)
Q Consensus 57 GG~F~---~~I~fP~dYP~~PP~v~F~T------------------G~ICLsiL~~~pe~W~P~~sI~~VL~~I~~lL 113 (293)
+|+.. +.|.|+.+||+.+|.+.++- ...|+.--.. ..|.+.+++..+|..|..-|
T Consensus 49 ~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~--~e~~~~~g~~~~l~rl~~Wl 124 (162)
T PF14457_consen 49 VGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW--SEWRPSWGPEGFLDRLFDWL 124 (162)
T ss_pred CCccccceEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH--HHhhhccCHHHHHHHHHHHH
Confidence 45544 56899999999999765554 4678876553 57999999999999999887
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=71.42 E-value=12 Score=34.14 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCC---CCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTE---FEGGIYHGRIQLPAEYPFKPPSFMLL 80 (293)
Q Consensus 14 kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~Tp---YeGG~F~~~I~fP~dYP~~PP~v~F~ 80 (293)
.-...|+.-|..--+..+.. ....+...+.+.|. +..+- |.| .|.+.+.++.+||..+|-+.+.
T Consensus 5 EeQe~E~EaLeSIY~de~~~-i~~~~~~~f~v~iq-~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 5 EEQEEELEALESIYPDEFKH-INSEDPPIFEVTIQ-YEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHHHhccchhhh-hhccCCccceeeee-cccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 33556777777655444421 12333334666775 23222 223 7889999999999999999543
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.16 E-value=11 Score=40.39 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCeE-EEEeeCCCCCCC-CCCeeeeec
Q 022719 13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY-HGRIQLPAEYPF-KPPSFMLLT 81 (293)
Q Consensus 13 ~kRL~kElk~L~~~p~~gi~~~p~~~di~~W~~~I~GP~~TpYeGG~F-~~~I~fP~dYP~-~PP~v~F~T 81 (293)
.+-|.+|+.-|-..- +.+...-.+---..-.+.+.||-.-- .|-+| ++.|.||.+||. .+|+++|..
T Consensus 422 pQnLgeE~S~Ig~k~-~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVKI-RNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhhHHhHHhHhhccc-cccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence 345566666554322 22222211111234455566654322 34444 788999999997 589999987
No 38
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=65.73 E-value=7.7 Score=26.60 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 022719 259 LFTWAAVGLTIAILVLLL 276 (293)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~ 276 (293)
.+-|++||+++.+++.++
T Consensus 5 ~yVW~sYg~t~~~l~~l~ 22 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLI 22 (46)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357999999988777664
No 39
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=63.15 E-value=9.2 Score=26.14 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 022719 259 LFTWAAVGLTIAILVLLL 276 (293)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~ 276 (293)
.+-|.+||+++..++.|+
T Consensus 6 ~yVW~sYg~t~l~l~~li 23 (45)
T TIGR03141 6 FYVWLAYGITALVLAGLI 23 (45)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467999999988876654
No 40
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=61.46 E-value=18 Score=37.35 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHcC
Q 022719 101 SVRTALVALIAFM 113 (293)
Q Consensus 101 sI~~VL~~I~~lL 113 (293)
++.+||..|..++
T Consensus 218 gLhHv~tElKeii 230 (574)
T PF07462_consen 218 GLHHVFTELKEII 230 (574)
T ss_pred hHHHHHHHHHHHH
Confidence 4566666666666
No 41
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=61.04 E-value=7.4 Score=31.59 Aligned_cols=40 Identities=28% Similarity=0.572 Sum_probs=29.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHH--------HHhcCCccccccCC
Q 022719 254 PADDRLFTWAAVGLTIAILVLLLKKF--------MKSNGHGTVFMDGS 293 (293)
Q Consensus 254 ~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~~~ 293 (293)
|..-+.+..+|+|+.+|+++.++.+- +-+--|||.|-||.
T Consensus 5 pd~sk~~l~~aiG~~lal~i~~ltr~tlPhvGDniH~LPhGG~YrDGT 52 (104)
T PF01307_consen 5 PDYSKSYLAAAIGVSLALIIFTLTRSTLPHVGDNIHSLPHGGRYRDGT 52 (104)
T ss_pred CCCccchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCC
Confidence 55566777899999999998887762 22335899999983
No 42
>PF12669 P12: Virus attachment protein p12 family
Probab=60.29 E-value=6.9 Score=28.36 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhc
Q 022719 262 WAAVGLTIAILVLL-LKKFMKSN 283 (293)
Q Consensus 262 ~~~~~~~~a~~~~~-~~~~~~~~ 283 (293)
|...+|++++++++ +++|+|..
T Consensus 2 iII~~Ii~~~~~~v~~r~~~k~~ 24 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRKFIKDK 24 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566666654 59999764
No 43
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=52.57 E-value=24 Score=34.48 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=32.7
Q ss_pred ccCCCCCccccCCCcchhhH---HHHHHHHHHHHHHHHHHHHHHhc
Q 022719 241 VQLQPKPETRVQKPADDRLF---TWAAVGLTIAILVLLLKKFMKSN 283 (293)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~ 283 (293)
...++.|..++++=.--|-+ -|+.||+.++-.+.|++.|+|++
T Consensus 299 yRYl~~P~~Pvkrd~PrrA~ilil~~LiGgm~g~g~vL~R~~lk~~ 344 (347)
T COG3765 299 YRYLQKPTLPVKRDSPRRAIILILGALIGGMLGAGVVLLRNALKKY 344 (347)
T ss_pred EEecCCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555777777664444554 45999999999999999999986
No 44
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=48.50 E-value=1.5e+02 Score=25.99 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=17.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 022719 253 KPADDRLFTWAAVGLTIAILVLLLKKFMK 281 (293)
Q Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 281 (293)
+|..-|.| ..++|++++|+++++=|.+|
T Consensus 91 ~~~l~R~~-~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 91 SPMLKRAL-YVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred ccchhhhH-HHHHHHHHHHHHHHHHHHHh
Confidence 35566888 45667776666665555554
No 45
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=47.99 E-value=21 Score=27.71 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 022719 255 ADDRLFTWAAVGLTIAILVLLLKK 278 (293)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~~~~~~~ 278 (293)
..||.+-|+++++.++.++.+++|
T Consensus 67 ~~D~~li~~~~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 67 KTDRILIFFAFLFFLLVVLYILWR 90 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhh
Confidence 368999999999999988888876
No 46
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=47.65 E-value=24 Score=26.34 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCccc
Q 022719 274 LLLKKFMKSNGHGTV 288 (293)
Q Consensus 274 ~~~~~~~~~~~~~~~ 288 (293)
+|.++|.|-+||.|+
T Consensus 36 yL~~~~v~~~g~~gl 50 (66)
T PF07438_consen 36 YLFDQFVRDNGYEGL 50 (66)
T ss_pred HHHHHHhhccCcchH
Confidence 467889999988773
No 47
>COG4499 Predicted membrane protein [Function unknown]
Probab=40.80 E-value=20 Score=35.72 Aligned_cols=21 Identities=29% Similarity=0.679 Sum_probs=17.8
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 022719 256 DDRLFTWAAVGLTIAILVLLL 276 (293)
Q Consensus 256 ~~~~~~~~~~~~~~a~~~~~~ 276 (293)
-=+.|.|+++||+|++|.+++
T Consensus 216 k~~ifk~~giGliillvl~li 236 (434)
T COG4499 216 KYTIFKYFGIGLIILLVLLLI 236 (434)
T ss_pred cceehhhHHHhHHHHHHHHHH
Confidence 568899999999998887765
No 48
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=38.79 E-value=27 Score=29.45 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCccccccC
Q 022719 270 AILVLLLKKFMKSNGHGTVFMDG 292 (293)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~ 292 (293)
.++.-.+.+||+++|++.|++||
T Consensus 61 ~~l~~~i~~fl~~~~~~vViiD~ 83 (136)
T PF05763_consen 61 HKLLDTIVRFLKENGNGVVIIDG 83 (136)
T ss_pred HHHHHHHHHHHHhCCCcEEEEec
Confidence 45666788999999999999997
No 49
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=37.34 E-value=44 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=18.6
Q ss_pred CCcchhhHH-HHHHHHHHHHHHHHHHHH
Q 022719 253 KPADDRLFT-WAAVGLTIAILVLLLKKF 279 (293)
Q Consensus 253 ~~~~~~~~~-~~~~~~~~a~~~~~~~~~ 279 (293)
+|+--..+. .+.+||.++|.+.++|.|
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~~re~ 82 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAFLREM 82 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 353444443 367899999999998864
No 50
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=36.51 E-value=58 Score=32.07 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=27.7
Q ss_pred CCCccccCCCcchhhH---HHHHHHHHHHHHHHHHHHHHHhc
Q 022719 245 PKPETRVQKPADDRLF---TWAAVGLTIAILVLLLKKFMKSN 283 (293)
Q Consensus 245 ~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~ 283 (293)
+.|..++++=.--|.| -|+.+|+.+++.+.|+|.|+++.
T Consensus 325 ~~p~~P~~rd~Pkr~lIlvl~~llG~~lg~~~vL~r~~~r~~ 366 (377)
T PRK10381 325 LSPSLPVKKDGPGKALIVILAALIGGMLACGFVLLRHAMRSR 366 (377)
T ss_pred CCCcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454555443334555 55999999999999999999875
No 51
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=36.28 E-value=39 Score=21.22 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=8.9
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHH
Q 022719 252 QKPADDRLFTWAAVGLTIAILVLL 275 (293)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~a~~~~~ 275 (293)
.++...|+||+.=+=++++|+.++
T Consensus 8 ~~~~~~~GFTLiEllVa~~I~~il 31 (31)
T PF13544_consen 8 RRRRRQRGFTLIELLVAMAILAIL 31 (31)
T ss_dssp ----------HHHHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHHHHHHC
Confidence 345678999996666666666553
No 52
>PHA03326 nuclear egress membrane protein; Provisional
Probab=35.24 E-value=1.6e+02 Score=27.80 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 022719 257 DRLFTWAAVGLTIAILVLLLKKFMKSNGHGT 287 (293)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (293)
-|....++++|++.++..|+-|-.-..++|.
T Consensus 243 ~~~~l~g~~~l~~llv~~v~~~~~~~~~~~~ 273 (275)
T PHA03326 243 IRVALVGAVVLALLLVCYVLWKAAPRAASGP 273 (275)
T ss_pred hhhHHHHHHHHHHHHHHHHHccccccCCCCC
Confidence 3666667777776666655544444444443
No 53
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=33.34 E-value=14 Score=32.34 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022719 263 AAVGLTIAILVLLLKKF 279 (293)
Q Consensus 263 ~~~~~~~a~~~~~~~~~ 279 (293)
.|||+..+|+++++||.
T Consensus 140 laIG~igGIIivvvRKm 156 (162)
T PF05808_consen 140 LAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp -----------------
T ss_pred HHHHHHhheeeEEeehh
Confidence 78888889999999985
No 54
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=33.30 E-value=54 Score=27.69 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=23.2
Q ss_pred CCeEEEEeeCCCCCC-CCCCeeeeec
Q 022719 57 GGIYHGRIQLPAEYP-FKPPSFMLLT 81 (293)
Q Consensus 57 GG~F~~~I~fP~dYP-~~PP~v~F~T 81 (293)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 599999999999999 9999999886
No 55
>COG4333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.90 E-value=30 Score=29.89 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=13.5
Q ss_pred HHHHHHhcCCcccccc
Q 022719 276 LKKFMKSNGHGTVFMD 291 (293)
Q Consensus 276 ~~~~~~~~~~~~~~~~ 291 (293)
+--|.||-|||||||.
T Consensus 61 ci~fA~swgyGgvy~~ 76 (167)
T COG4333 61 CISFAKSWGYGGVYMA 76 (167)
T ss_pred HHHHHhhcccCcEEee
Confidence 3468999999999984
No 56
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=31.86 E-value=56 Score=24.44 Aligned_cols=17 Identities=41% Similarity=0.911 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022719 260 FTWAAVGLTIAILVLLL 276 (293)
Q Consensus 260 ~~~~~~~~~~a~~~~~~ 276 (293)
+-|.|||+++.-+++|+
T Consensus 18 yVWlA~~~tll~l~~l~ 34 (67)
T COG3114 18 YVWLAVGMTLLPLAVLV 34 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57999999987766665
No 57
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=30.90 E-value=60 Score=28.93 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCeEEEEeeCCCCCCCCCCeeeeec
Q 022719 57 GGIYHGRIQLPAEYPFKPPSFMLLT 81 (293)
Q Consensus 57 GG~F~~~I~fP~dYP~~PP~v~F~T 81 (293)
.|.|.|+=.||--||..+|.|.|+-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 5899999999999999999999884
No 58
>PRK13468 F0F1 ATP synthase subunit C; Provisional
Probab=30.51 E-value=34 Score=26.61 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022719 262 WAAVGLTIAILVLLLKKFM 280 (293)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~ 280 (293)
.+.|+|++|++++....|+
T Consensus 63 ~ai~alviallllfa~p~~ 81 (82)
T PRK13468 63 MAIYCFVVAMILLFANPFW 81 (82)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 4788999999888776664
No 59
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.90 E-value=58 Score=26.42 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCc
Q 022719 275 LLKKFMKSNGHG 286 (293)
Q Consensus 275 ~~~~~~~~~~~~ 286 (293)
++.||+-||.|-
T Consensus 42 ~~~k~~~SY~H~ 53 (102)
T PF15176_consen 42 VWYKYLASYRHH 53 (102)
T ss_pred HHHHHHhccccc
Confidence 678999999874
No 60
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=28.81 E-value=86 Score=30.29 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=26.0
Q ss_pred CCccccCCCcchhhH---HHHHHHHHHHHHHHHHHHHHHhc
Q 022719 246 KPETRVQKPADDRLF---TWAAVGLTIAILVLLLKKFMKSN 283 (293)
Q Consensus 246 ~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~ 283 (293)
.|..++++-+--|.| .|+.+|+.+++++.|+|.|+++.
T Consensus 282 ~p~~Pv~~d~Pkr~lIlil~~~lG~~lg~~~vL~r~~~r~~ 322 (325)
T PRK15471 282 KPTLPVRRDSPKKAITLVLAVLLGGMIGAGIVLGRNALRNY 322 (325)
T ss_pred CCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444332334544 66899999999999999998764
No 61
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=28.75 E-value=78 Score=26.24 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 022719 260 FTWAAVGLTIAILVLLLKKFMKSN 283 (293)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~ 283 (293)
|.--++||++||+++++-.+|++.
T Consensus 103 l~tT~~GL~vai~~~~~~~~l~~~ 126 (139)
T PF01618_consen 103 LITTAYGLVVAIPALPFYNYLKRR 126 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334789999999999999888763
No 62
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=27.44 E-value=76 Score=23.61 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022719 263 AAVGLTIAILVLLLKKFMK 281 (293)
Q Consensus 263 ~~~~~~~a~~~~~~~~~~~ 281 (293)
+|+|+.+|+++.++.=+|+
T Consensus 45 faiG~~~AlvLv~ip~~l~ 63 (64)
T PF09472_consen 45 FAIGFLFALVLVGIPILLM 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8999999999888876553
No 63
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=27.01 E-value=46 Score=27.09 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=15.6
Q ss_pred chhhHHH---HHHHHHHHHHHHHH
Q 022719 256 DDRLFTW---AAVGLTIAILVLLL 276 (293)
Q Consensus 256 ~~~~~~~---~~~~~~~a~~~~~~ 276 (293)
++++||+ .+|=|+|.|++||.
T Consensus 10 ~~kgFTLvEMLiVLlIISiLlLl~ 33 (107)
T COG4537 10 HKKGFTLVEMLIVLLIISILLLLF 33 (107)
T ss_pred hcccccHHHHHHHHHHHHHHHHHH
Confidence 5699999 67777777777664
No 64
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=26.99 E-value=74 Score=23.71 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 022719 259 LFTWAAVGLTIAILVLLLKK 278 (293)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~ 278 (293)
.|..|++|+.+|++--+||+
T Consensus 6 IFkIAgVGIlvavl~~vLk~ 25 (64)
T TIGR02848 6 IFKIAGVGILVAVIHTILKQ 25 (64)
T ss_pred hhhHhhHHHHHHHHHHHHHH
Confidence 46779999998887766664
No 65
>PF04964 Flp_Fap: Flp/Fap pilin component; InterPro: IPR007047 This entry is for the fimbriae associated protein Flp/Fap pilin component.
Probab=26.41 E-value=71 Score=21.87 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=18.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 022719 255 ADDRLFTWAAVGLTIAILVLLLK 277 (293)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~~~~~~ 277 (293)
.|+|+-|..=|||.+|++.+++=
T Consensus 3 ~de~GaTaiEYali~alia~~ii 25 (46)
T PF04964_consen 3 RDERGATAIEYALIAALIAVAII 25 (46)
T ss_pred cccccchHHHHHHHHHHHHHHHH
Confidence 48899999888888888776664
No 66
>CHL00061 atpH ATP synthase CF0 C subunit
Probab=26.32 E-value=40 Score=26.10 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022719 263 AAVGLTIAILVLLLKKF 279 (293)
Q Consensus 263 ~~~~~~~a~~~~~~~~~ 279 (293)
+.|||++|++++..+-|
T Consensus 64 aiy~lvvalillf~~p~ 80 (81)
T CHL00061 64 TIYGLVVALALLFANPF 80 (81)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 78889999888876544
No 67
>PRK00523 hypothetical protein; Provisional
Probab=25.84 E-value=95 Score=23.67 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=3.7
Q ss_pred HHHHHHhc
Q 022719 276 LKKFMKSN 283 (293)
Q Consensus 276 ~~~~~~~~ 283 (293)
.+|+||.|
T Consensus 30 ~~k~l~~N 37 (72)
T PRK00523 30 FKKQIREN 37 (72)
T ss_pred HHHHHHHC
Confidence 34555543
No 68
>TIGR02929 anfG_nitrog Fe-only nitrogenase, delta subunit. Nitrogenase, also called dinitrogenase, is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfG, represents the delta subunit of the Fe-only alternative nitrogenase. It is homologous to VnfG, the delta subunit of the V-containing (vanadium) nitrogenase.
Probab=25.73 E-value=3.4e+02 Score=22.29 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=47.1
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCC-CCCChHHHHHHHHHhHHHHHHHHHH---HHhhhCChhHHHHHHHHHHHHhc
Q 022719 92 HPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYKKEERRALAIKSRE---AAPKFGTPERQKLIDEIHEYMLS 163 (293)
Q Consensus 92 ~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~A~~~~~~dre~f~~kare---~~~kya~~~~~~l~~e~~~~~~~ 163 (293)
|...|...-+++.||.....+|.- .|....++..+|--|.-.+....++ |...........+++.+|+.+..
T Consensus 18 ~SRsWDRe~q~egIl~kt~~lL~GE~~~~~Tp~Dr~y~~DAv~la~~~k~rfpW~~~~~kdei~~l~~~lk~rl~~ 93 (109)
T TIGR02929 18 NSRGWDREIQNEGILMKTRQILCGENAREDTSADRCYWVDAVTLAGAYKRRFPWLEDMTKDEIKTLMQALHEKMDH 93 (109)
T ss_pred cccchhHHHhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999975 4444333422222444444444443 45555566677788888887643
No 69
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=24.64 E-value=94 Score=21.74 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcCCccccc
Q 022719 260 FTWAAVGLTIAI-LVLLLKKFMKSNGHGTVFM 290 (293)
Q Consensus 260 ~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~ 290 (293)
|.+-.+|+++|+ +.+++||++....-..+.|
T Consensus 3 ~~~y~~~~~~~l~~~~il~~~~~~~~~~~fim 34 (54)
T PF07664_consen 3 FSLYLLGILVALLVGLILKKTILKGESSPFIM 34 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCeEE
Confidence 556667776665 4577775554444444333
No 70
>PHA01735 hypothetical protein
Probab=24.41 E-value=49 Score=25.15 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.7
Q ss_pred HHHHHhcCCccccccCC
Q 022719 277 KKFMKSNGHGTVFMDGS 293 (293)
Q Consensus 277 ~~~~~~~~~~~~~~~~~ 293 (293)
.+|||+|+.-||-.+||
T Consensus 39 ~d~Lk~NdItgv~~~gs 55 (76)
T PHA01735 39 CDWLKSNDITGVAVDGS 55 (76)
T ss_pred HHHHHHCCCceeeCCCC
Confidence 48999999999888875
No 71
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=24.33 E-value=94 Score=25.84 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=19.1
Q ss_pred cccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 022719 249 TRVQKPADDRLFTWAAVGLTIAILVLLLKK 278 (293)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 278 (293)
..-|.|.-=.+|-.+-+++++|=++|+|||
T Consensus 76 IVLQ~p~Ri~gll~F~~~v~laQi~LVLKK 105 (118)
T PF01333_consen 76 IVLQNPNRIQGLLAFFAAVMLAQIFLVLKK 105 (118)
T ss_dssp EEE--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccHhHhHHHHHHHHHHHHheeeeeh
Confidence 344556333344557778888989999988
No 72
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.17 E-value=1.2e+02 Score=23.09 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q 022719 262 WAAVGLTIAILV 273 (293)
Q Consensus 262 ~~~~~~~~a~~~ 273 (293)
+|++++++|+++
T Consensus 5 lail~ivl~ll~ 16 (71)
T COG3763 5 LAILLIVLALLA 16 (71)
T ss_pred HHHHHHHHHHHH
Confidence 355666666554
No 73
>TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfG, represents the delta subunit of the V-containing (vanadium) alternative nitrogenase. It is homologous to AnfG, the delta subunit of the Fe-only nitrogenase.
Probab=24.17 E-value=3.7e+02 Score=22.09 Aligned_cols=72 Identities=8% Similarity=0.126 Sum_probs=47.1
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCC-CCCChHHHHHHHHHhHHHHHHHHHH---HHhhhCChhHHHHHHHHHHHHhc
Q 022719 92 HPEHWQPSWSVRTALVALIAFMPT-NPNGALGSLDYKKEERRALAIKSRE---AAPKFGTPERQKLIDEIHEYMLS 163 (293)
Q Consensus 92 ~pe~W~P~~sI~~VL~~I~~lL~~-~P~~~l~A~~~~~~dre~f~~kare---~~~kya~~~~~~l~~e~~~~~~~ 163 (293)
|...|...-+++.||.....+|.- .|....++..+|--|.-.+....++ |...........+++.+|+.+..
T Consensus 18 ~SRsWDRe~q~egIl~~t~~ll~GE~~~~~Tp~Dr~yy~DAv~la~~~k~rfpW~~~~~kdei~~l~~~lk~rl~~ 93 (109)
T TIGR02930 18 FSRTWDREENIEGVMTMAGKLLNGEKINLETPMDKLFYADAKNLASDIKERFPWISELDKDQILELVESVKKRLVE 93 (109)
T ss_pred cccchhHHHhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999965 4444334422222444444444443 45555566667788888887643
No 74
>PF10617 DUF2474: Protein of unknown function (DUF2474); InterPro: IPR018895 This family of short proteins has no known function.
Probab=24.08 E-value=2.1e+02 Score=19.39 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=24.8
Q ss_pred CCCcchhhHHHHHHH----HHHHHHHHHHHHHHHhcCCc
Q 022719 252 QKPADDRLFTWAAVG----LTIAILVLLLKKFMKSNGHG 286 (293)
Q Consensus 252 ~~~~~~~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~ 286 (293)
|||.-.|++-+++|+ ++++++.+++|=+++.-|+.
T Consensus 1 ~~~~wkRl~W~v~iW~~SV~aL~~va~~~Rllm~aAGl~ 39 (40)
T PF10617_consen 1 KKPLWKRLGWFVLIWAASVLALGVVAMLFRLLMTAAGLK 39 (40)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 356565665444444 57889999999999988764
No 75
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=24.03 E-value=1e+02 Score=21.78 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 022719 259 LFTWAAVGLTIAILVLLLKKF 279 (293)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~ 279 (293)
.|..+++|++.+++..++|+.
T Consensus 2 I~ki~gigii~~~l~~vlk~~ 22 (58)
T PF06686_consen 2 ILKIVGIGIIAAFLALVLKQA 22 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 356788999999999998864
No 76
>PRK11053 dihydropteridine reductase; Provisional
Probab=23.57 E-value=1.3e+02 Score=26.59 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCccccccC
Q 022719 259 LFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG 292 (293)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 292 (293)
...|+..+..+|+.-|+|. +++-|+|+++|.|
T Consensus 135 ~~~~~~~~~~ia~~~lmLa--A~~~Glgs~~i~g 166 (217)
T PRK11053 135 LQHWMEKQVYLALGNLLLG--AAALGIDATPIEG 166 (217)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHcCCCCCCcCC
Confidence 3467777777888777774 7899999999987
No 77
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=23.55 E-value=1e+02 Score=26.70 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.9
Q ss_pred CCeEEEEeeCCCCCC-----CCCCeeeeec
Q 022719 57 GGIYHGRIQLPAEYP-----FKPPSFMLLT 81 (293)
Q Consensus 57 GG~F~~~I~fP~dYP-----~~PP~v~F~T 81 (293)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 489999999999999 8999999886
No 78
>PF05371 Phage_Coat_Gp8: Phage major coat protein, Gp8; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1IFK_A 2C0W_A 2HI5_A 1FDM_A 1IFJ_A 2C0X_A 1IFI_A 1IFD_A 1MZT_A 1IFL_A ....
Probab=23.44 E-value=1.4e+02 Score=21.39 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=9.9
Q ss_pred hHHHH-HHHHHHHHHH-HHHHHHH
Q 022719 259 LFTWA-AVGLTIAILV-LLLKKFM 280 (293)
Q Consensus 259 ~~~~~-~~~~~~a~~~-~~~~~~~ 280 (293)
.++|. ++-+++|.++ -|.|||.
T Consensus 26 ~~aw~vvv~v~gafigirlFKKf~ 49 (52)
T PF05371_consen 26 GYAWPVVVLVTGAFIGIRLFKKFA 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34663 3333333322 3556664
No 79
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.76 E-value=91 Score=27.84 Aligned_cols=18 Identities=28% Similarity=0.779 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 022719 257 DRLFTWAAVGLTIAILVL 274 (293)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~ 274 (293)
=++|-|.|+||++.|...
T Consensus 31 ~k~l~~~~i~~~a~i~i~ 48 (181)
T PRK06654 31 IKILQWVAIGLFAVIFIV 48 (181)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 468899999998877543
No 80
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=22.51 E-value=1.5e+02 Score=28.89 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=30.2
Q ss_pred CceEEEEEEeCCCCCCCCCCeEEEEeeCCCCCCCCCCeeeee
Q 022719 39 NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL 80 (293)
Q Consensus 39 di~~W~~~I~GP~~TpYeGG~F~~~I~fP~dYP~~PP~v~F~ 80 (293)
....+.+.| ||.|-..+-+|.|...||..||-+.|-
T Consensus 52 ~~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~ 87 (333)
T PF06113_consen 52 NCDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFG 87 (333)
T ss_pred ccceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeC
Confidence 344666666 588999999999999999999999885
No 81
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.65 E-value=2.8e+02 Score=21.24 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=25.1
Q ss_pred HHHHHHHcCCCCCCChHHHHHHHHHhHHHHHHHHHHHHhhhC
Q 022719 105 ALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFG 146 (293)
Q Consensus 105 VL~~I~~lL~~~P~~~l~A~~~~~~dre~f~~kare~~~kya 146 (293)
+++.+.-+|.+.|+|.. |+.+|.+-.++..+..+++.++|+
T Consensus 14 a~~dl~LyLDTHP~d~~-Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 14 AVVDLNLYLDTHPDDQE-ALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred HHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35556666777887754 445555555566666666666665
No 82
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=21.46 E-value=78 Score=25.04 Aligned_cols=16 Identities=31% Similarity=0.754 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 022719 267 LTIAILVLLLKKFMKS 282 (293)
Q Consensus 267 ~~~a~~~~~~~~~~~~ 282 (293)
++|=|+++++||||.=
T Consensus 6 ivIPvLLwIykkFlqP 21 (88)
T PF14975_consen 6 IVIPVLLWIYKKFLQP 21 (88)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5678899999999963
No 83
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=21.46 E-value=75 Score=23.97 Aligned_cols=15 Identities=47% Similarity=0.791 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 022719 262 WAAVGLTIAILVLLL 276 (293)
Q Consensus 262 ~~~~~~~~a~~~~~~ 276 (293)
|+|||+...|++-|+
T Consensus 33 W~aIGvi~gi~~~~l 47 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLL 47 (68)
T ss_pred chhHHHHHHHHHHHH
Confidence 888888776665544
No 84
>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.
Probab=21.27 E-value=1.3e+02 Score=23.67 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022719 262 WAAVGLTIAILVLLLKKFMK 281 (293)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~~~ 281 (293)
.+.|+|++|++.+....|+.
T Consensus 64 ~ai~alvia~lllf~~p~~~ 83 (86)
T TIGR03322 64 TAIYCFVVSMILIFANPFWN 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999888777754
No 85
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=21.03 E-value=97 Score=27.97 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 022719 257 DRLFTWAAVGLTIAILVLLLKKFMKS 282 (293)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~~~~~~~ 282 (293)
.--|---|+||.+||..+++-.+++.
T Consensus 164 seAL~aTA~GL~vAIPAvi~yn~l~r 189 (216)
T COG0811 164 SEALIATAIGLFVAIPAVVAYNVLRR 189 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444578999999999999888764
No 86
>PF03139 AnfG_VnfG: Vanadium/alternative nitrogenase delta subunit; InterPro: IPR004349 The nitrogenase complex 1.18.6.1 from EC catalyses the conversion of molecular nitrogen to ammonia (nitrogen fixation). The complex is hexameric, consisting of 2 alpha, 2 beta, and 2 delta subunits. This family represents the delta subunit of a group of nitrogenases that do not utilise molybdenum (Mo) as a cofactor, but instead use either vanadium (V nitrogenases), or iron (alternative nitrogenases). ; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0055114 oxidation-reduction process
Probab=20.55 E-value=4.5e+02 Score=21.71 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=45.6
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCCCC-CChHHHHHHHHHhHHHHHHHHHH---HHhhhCChhHHHHHHHHHHHHhc
Q 022719 92 HPEHWQPSWSVRTALVALIAFMPTNP-NGALGSLDYKKEERRALAIKSRE---AAPKFGTPERQKLIDEIHEYMLS 163 (293)
Q Consensus 92 ~pe~W~P~~sI~~VL~~I~~lL~~~P-~~~l~A~~~~~~dre~f~~kare---~~~kya~~~~~~l~~e~~~~~~~ 163 (293)
|...|...-.++.||.....||...| ....++..+|=-|...+....|+ |...........++..+|+.+.-
T Consensus 21 ~SR~WDRe~qnegIL~kt~qlL~gE~v~~eTp~Drcyw~DAv~la~~~k~rfpW~~~~~k~ei~~lm~~lk~rld~ 96 (112)
T PF03139_consen 21 HSRSWDREEQNEGILNKTTQLLCGEPVDLETPADRCYWVDAVCLAEAFKERFPWINEMSKDEIKSLMQGLKERLDY 96 (112)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHcCcHHHHCCHHHHHHHHHHHHHHHhH
Confidence 56889999999999999999997544 33333322222344344333333 44555566677788888887643
No 87
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.51 E-value=1.1e+02 Score=24.25 Aligned_cols=17 Identities=41% Similarity=0.747 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 022719 258 RLFTWAAVGLTIAILVL 274 (293)
Q Consensus 258 ~~~~~~~~~~~~a~~~~ 274 (293)
=.|+|||+|+.+-.+.+
T Consensus 17 i~f~waafg~s~~m~~~ 33 (95)
T COG4298 17 IMFNWAAFGASYFMLGL 33 (95)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 35799999988766544
Done!