Your job contains 1 sequence.
>022723
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE
DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV
ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG
TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ
GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022723
(293 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2026689 - symbol:IMP4 "AT1G63780" species:3702... 1273 9.3e-130 1
DICTYBASE|DDB_G0302418 - symbol:imp4 "U3 small nucleolar ... 916 6.3e-92 1
ZFIN|ZDB-GENE-040718-474 - symbol:imp4 "IMP4, U3 small nu... 889 4.6e-89 1
MGI|MGI:106572 - symbol:Imp4 "IMP4, U3 small nucleolar ri... 866 1.3e-86 1
RGD|1308463 - symbol:Imp4 "IMP4, U3 small nucleolar ribon... 866 1.3e-86 1
UNIPROTKB|Q0VD01 - symbol:IMP4 "U3 small nucleolar ribonu... 859 6.9e-86 1
UNIPROTKB|Q96G21 - symbol:IMP4 "U3 small nucleolar ribonu... 858 8.9e-86 1
WB|WBGene00014083 - symbol:ZK795.3 species:6239 "Caenorha... 776 4.3e-77 1
POMBASE|SPAC19A8.07c - symbol:SPAC19A8.07c "U3 snoRNP-ass... 742 1.7e-73 1
CGD|CAL0000877 - symbol:IMP4 species:5476 "Candida albica... 718 6.1e-71 1
SGD|S000005019 - symbol:IMP4 "Component of the SSU proces... 710 4.3e-70 1
FB|FBgn0039274 - symbol:CG11920 species:7227 "Drosophila ... 706 1.1e-69 1
UNIPROTKB|G4ND46 - symbol:MGG_00977 "U3 small nucleolar r... 624 5.5e-61 1
GENEDB_PFALCIPARUM|PF08_0055 - symbol:PF08_0055 "u3 small... 472 6.9e-59 2
UNIPROTKB|Q8IB23 - symbol:PF08_0055 "U3 small nucleolar r... 472 6.9e-59 2
UNIPROTKB|Q8AVP1 - symbol:rpf1 "Ribosome production facto... 451 1.2e-42 1
WB|WBGene00009711 - symbol:F44G4.1 species:6239 "Caenorha... 447 3.2e-42 1
UNIPROTKB|E2RLN4 - symbol:RPF1 "Uncharacterized protein" ... 439 2.2e-41 1
UNIPROTKB|F1NRK2 - symbol:RPF1 "Uncharacterized protein" ... 438 2.8e-41 1
UNIPROTKB|A4FUG9 - symbol:BXDC5 "Uncharacterized protein"... 438 2.8e-41 1
UNIPROTKB|Q9H9Y2 - symbol:RPF1 "Ribosome production facto... 437 3.6e-41 1
UNIPROTKB|I3LN44 - symbol:RPF1 "Uncharacterized protein" ... 437 3.6e-41 1
UNIPROTKB|Q5R631 - symbol:RPF1 "Ribosome production facto... 437 3.6e-41 1
MGI|MGI:1917535 - symbol:Rpf1 "ribosome production factor... 435 5.9e-41 1
RGD|1559755 - symbol:Rpf1 "ribosome production factor 1 h... 413 1.3e-38 1
ZFIN|ZDB-GENE-040625-177 - symbol:rpf1 "ribosome producti... 409 3.4e-38 1
TAIR|locus:2116992 - symbol:MEE49 "AT4G01560" species:370... 406 7.0e-38 1
FB|FBgn0032408 - symbol:CG6712 species:7227 "Drosophila m... 402 1.9e-37 1
ASPGD|ASPL0000059866 - symbol:AN0647 species:162425 "Emer... 340 6.9e-31 1
POMBASE|SPAC4F8.04 - symbol:SPAC4F8.04 "Brix domain prote... 331 6.2e-30 1
SGD|S000001130 - symbol:RPF1 "Protein involved in assembl... 317 1.9e-28 1
DICTYBASE|DDB_G0285829 - symbol:bxdc5 "brix domain-contai... 315 3.1e-28 1
CGD|CAL0003496 - symbol:RPF1 species:5476 "Candida albica... 311 8.2e-28 1
ASPGD|ASPL0000077745 - symbol:AN8834 species:162425 "Emer... 217 2.7e-24 3
DICTYBASE|DDB_G0287937 - symbol:bxdc2 "brix domain-contai... 147 6.9e-08 1
UNIPROTKB|Q8TDN6 - symbol:BRIX1 "Ribosome biogenesis prot... 114 0.00050 1
>TAIR|locus:2026689 [details] [associations]
symbol:IMP4 "AT1G63780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=TAS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=TAS] [GO:0006364 "rRNA processing" evidence=RCA;TAS]
[GO:0015030 "Cajal body" evidence=TAS] [GO:0016363 "nuclear matrix"
evidence=IDA] [GO:0000478 "endonucleolytic cleavage involved in
rRNA processing" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] InterPro:IPR004154 EMBL:CP002684 GO:GO:0005730
GO:GO:0003676 GO:GO:0015030 GO:GO:0016363 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 GO:GO:0005732 EMBL:AC011622 HOGENOM:HOG000172063
KO:K14561 OMA:SHFPHGP EMBL:AC010852 EMBL:AY093002 EMBL:AY114605
EMBL:AY088147 IPI:IPI00528532 PIR:H96662 RefSeq:NP_176564.1
UniGene:At.43038 ProteinModelPortal:Q9S826 SMR:Q9S826 STRING:Q9S826
PRIDE:Q9S826 EnsemblPlants:AT1G63780.1 GeneID:842682
KEGG:ath:AT1G63780 TAIR:At1g63780 InParanoid:Q9S826
PhylomeDB:Q9S826 ProtClustDB:CLSN2682600 ArrayExpress:Q9S826
Genevestigator:Q9S826 Uniprot:Q9S826
Length = 294
Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
Identities = 234/294 (79%), Positives = 270/294 (91%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
M RR +RL++EY+YRKSLEG ER +YE+KR I+EALQEGKPIPTELRN EA LRQEIDLE
Sbjct: 1 MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEIDLE 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
D+NTA+PRSHIDDEYANATE DPKILLTTSR+PSAPL +F KELKFVFPN+QR+NRG QV
Sbjct: 61 DQNTAVPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQV 120
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
ISEIIET R+H+FTDV+LVHEHRGVPDGLII HLPFGPTAYFGLLNVVTRHDI D+KSIG
Sbjct: 121 ISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIG 180
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEK- 239
MPE YPHLI +NF +++G+R NILKH+FP PK D KRI+TF+NQSDYISFR+H+Y+K
Sbjct: 181 KMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAKRIVTFSNQSDYISFRNHVYDKG 240
Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
+GGPKS+ELKEIGPRFELRLYQ+KLGTV+Q+EA+IEWVIRPYMNTSKKRKF+G+
Sbjct: 241 EGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFIGE 294
>DICTYBASE|DDB_G0302418 [details] [associations]
symbol:imp4 "U3 small nucleolar ribonucleoprotein
protein" species:44689 "Dictyostelium discoideum" [GO:0034457
"Mpp10 complex" evidence=ISS] [GO:0030515 "snoRNA binding"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004154
dictyBase:DDB_G0302418 GenomeReviews:CM000152_GR GO:GO:0030515
EMBL:AAFI02000042 GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0034457
KO:K14561 OMA:SHFPHGP RefSeq:XP_002649153.1
EnsemblProtists:DDB0302419 GeneID:8623193 KEGG:ddi:DDB_G0302418
ProtClustDB:CLSZ2735584 Uniprot:C7G018
Length = 286
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 176/292 (60%), Positives = 228/292 (78%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRRN RLR+EYLYRK+LEG ++ YEKKR+IK+AL EGKPIPTEL + E R E+ L+
Sbjct: 1 MLRRNARLRQEYLYRKNLEGADKEDYEKKRRIKKALDEGKPIPTELVDFEFKHRDEMKLD 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
+ P+S IDDEYA A +DPK+L+TTSR+PS+ L QF KEL+ +FPN+Q+MNRG V
Sbjct: 61 KLDGNRPKS-IDDEYARAGIQDPKVLVTTSREPSSRLIQFTKELRMLFPNSQKMNRGAHV 119
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ E+++ CRA++ TD+V+ HEHRG P GL+I HLP+GPTAYF + N V HDI +
Sbjct: 120 VKELVDACRANDVTDLVIAHEHRGEPVGLVISHLPYGPTAYFEIKNCVMIHDIDE----A 175
Query: 181 TMPE-AYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEK 239
T P A+PHLI NF + LGERT NILK+LFPVPK D++R++TF+N +D+ISFRHHIYEK
Sbjct: 176 TPPSLAFPHLIFHNFTTPLGERTENILKYLFPVPKDDSRRVVTFSNDNDFISFRHHIYEK 235
Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
G K++ LKEIGPRFEL+LY+I+LGT+DQ EA +EWV +PYMN++K R FL
Sbjct: 236 DGY-KNVILKEIGPRFELKLYKIQLGTLDQDEADLEWVYKPYMNSTKNRLFL 286
>ZFIN|ZDB-GENE-040718-474 [details] [associations]
symbol:imp4 "IMP4, U3 small nucleolar
ribonucleoprotein, homolog (yeast)" species:7955 "Danio rerio"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004154
ZFIN:ZDB-GENE-040718-474 GO:GO:0003676 GO:GO:0030529
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 CTD:92856 eggNOG:COG2136
GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4JHCG8
EMBL:CU041374 EMBL:BC075765 IPI:IPI00488146 RefSeq:NP_001002719.1
UniGene:Dr.19345 STRING:Q6DI25 Ensembl:ENSDART00000076742
GeneID:436992 KEGG:dre:436992 InParanoid:Q6DI25 NextBio:20831411
Uniprot:Q6DI25
Length = 291
Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
Identities = 166/292 (56%), Positives = 217/292 (74%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRR +RLR+EYLYRK+ E + R + EKK+K+K AL E + +PTE+R E +++ ++ +
Sbjct: 1 MLRREVRLRKEYLYRKAQEDRLRTIEEKKQKLKSALDENRLLPTEVRKEALEVQKLLEFD 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
DE SH+DDEY A DPKI++TTSRDPS+ L F KE+K +FP AQRMNRG
Sbjct: 61 DEGGEGVSSHMDDEYKWAGVEDPKIMVTTSRDPSSRLKMFAKEMKLMFPGAQRMNRGNHE 120
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ ++ C+++ TD+V+VHE RG PDGL++CHLPFGPTAYF + NVV RHD+ D IG
Sbjct: 121 VKTLVHACKSNNVTDLVIVHETRGQPDGLVVCHLPFGPTAYFTMYNVVMRHDVPD---IG 177
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
TM EAYPHLI NF S+LG R +NILK+LFPVPK D++R+ITFAN DYISFRHH Y+K
Sbjct: 178 TMSEAYPHLIFHNFTSRLGRRVSNILKYLFPVPKEDSRRVITFANTDDYISFRHHTYKKT 237
Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVD-QSEAQIEWVIRPYMNTSKKRKFL 291
K++EL E+GPRFE++LY IKLGT++ +S A +EW PY T+KKRKFL
Sbjct: 238 DH-KNVELTEVGPRFEMKLYMIKLGTLENESTADVEWRHHPYTRTAKKRKFL 288
>MGI|MGI:106572 [details] [associations]
symbol:Imp4 "IMP4, U3 small nucleolar ribonucleoprotein,
homolog (yeast)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;ISA] [GO:0006364 "rRNA
processing" evidence=TAS] [GO:0030519 "snoRNP binding"
evidence=ISA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR004154
MGI:MGI:106572 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
GO:GO:0030519 GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 CTD:92856
eggNOG:COG2136 GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4JHCG8
EMBL:AF334609 EMBL:AK010504 EMBL:AK013334 EMBL:AK084933
EMBL:AK151176 EMBL:AK152214 EMBL:AK166903 EMBL:BC037602
EMBL:BC069930 IPI:IPI00395166 RefSeq:NP_848716.2 UniGene:Mm.289667
ProteinModelPortal:Q8VHZ7 SMR:Q8VHZ7 STRING:Q8VHZ7
PhosphoSite:Q8VHZ7 PaxDb:Q8VHZ7 PRIDE:Q8VHZ7
Ensembl:ENSMUST00000027303 GeneID:27993 KEGG:mmu:27993
UCSC:uc007aor.2 InParanoid:Q8VHZ7 NextBio:306486 Bgee:Q8VHZ7
Genevestigator:Q8VHZ7 GermOnline:ENSMUSG00000026127 Uniprot:Q8VHZ7
Length = 291
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 166/292 (56%), Positives = 214/292 (73%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRR RLRREYLYRK+ E +R + EKK ++K AL+E + IPTELR E AL+ ++ +
Sbjct: 1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG
Sbjct: 61 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +G
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
TM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K
Sbjct: 178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT 237
Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
+++EL E+GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL
Sbjct: 238 DH-RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>RGD|1308463 [details] [associations]
symbol:Imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog
(yeast)" species:10116 "Rattus norvegicus" [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004154 RGD:1308463 GO:GO:0005730 GO:GO:0030529
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 CTD:92856 eggNOG:COG2136
GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 EMBL:BC087066 IPI:IPI00952233
RefSeq:NP_001009700.1 UniGene:Rn.6698 ProteinModelPortal:Q5PQR5
SMR:Q5PQR5 STRING:Q5PQR5 PRIDE:Q5PQR5 Ensembl:ENSRNOT00000066913
GeneID:316317 KEGG:rno:316317 UCSC:RGD:1308463 InParanoid:Q5PQR5
NextBio:670696 ArrayExpress:Q5PQR5 Genevestigator:Q5PQR5
Uniprot:Q5PQR5
Length = 291
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 166/292 (56%), Positives = 214/292 (73%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRR RLRREYLYRK+ E +R + EKK ++K AL+E + IPTELR E AL+ ++ +
Sbjct: 1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG
Sbjct: 61 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +G
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
TM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K
Sbjct: 178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT 237
Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
+++EL E+GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL
Sbjct: 238 DH-RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>UNIPROTKB|Q0VD01 [details] [associations]
symbol:IMP4 "U3 small nucleolar ribonucleoprotein protein
IMP4" species:9913 "Bos taurus" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] InterPro:IPR004154
GO:GO:0005730 GO:GO:0030529 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EMBL:BC119909 IPI:IPI00703914 RefSeq:NP_001069085.1 UniGene:Bt.5241
ProteinModelPortal:Q0VD01 STRING:Q0VD01 PRIDE:Q0VD01
Ensembl:ENSBTAT00000004184 GeneID:513405 KEGG:bta:513405 CTD:92856
eggNOG:COG2136 GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 InParanoid:Q0VD01 KO:K14561 OMA:SHFPHGP
OrthoDB:EOG4JHCG8 NextBio:20870839 Uniprot:Q0VD01
Length = 291
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 164/292 (56%), Positives = 213/292 (72%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRR RLRREYLYRK+ E ER E+K K++ AL+E + IPTELR E AL+ ++ +
Sbjct: 1 MLRREARLRREYLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFD 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
D +H+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG
Sbjct: 61 DAGGEGVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +G
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
T EA PHLI+ F S+LG+R ++IL++LFPVPK D++R+ITFANQ DYISFRHH+Y+K
Sbjct: 178 TASEAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKT 237
Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
+++EL E+GPRFEL+LY I+LGT++Q + A +EW PY NT+ KR FL
Sbjct: 238 NH-RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288
>UNIPROTKB|Q96G21 [details] [associations]
symbol:IMP4 "U3 small nucleolar ribonucleoprotein protein
IMP4" species:9606 "Homo sapiens" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006364 "rRNA processing" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004154 GO:GO:0005730 GO:GO:0030529
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AC132479 CTD:92856
eggNOG:COG2136 HOGENOM:HOG000172063 HOVERGEN:HBG056795 KO:K14561
OMA:SHFPHGP OrthoDB:EOG4JHCG8 EMBL:BC010042 IPI:IPI00181116
RefSeq:NP_219484.1 UniGene:Hs.91579 ProteinModelPortal:Q96G21
SMR:Q96G21 STRING:Q96G21 PhosphoSite:Q96G21 DMDM:73621060
PaxDb:Q96G21 PeptideAtlas:Q96G21 PRIDE:Q96G21 DNASU:92856
Ensembl:ENST00000259239 GeneID:92856 KEGG:hsa:92856 UCSC:uc002tra.1
GeneCards:GC02P131099 HGNC:HGNC:30856 MIM:612981 neXtProt:NX_Q96G21
PharmGKB:PA142671656 InParanoid:Q96G21 ChiTaRS:IMP4
GenomeRNAi:92856 NextBio:77904 ArrayExpress:Q96G21 Bgee:Q96G21
CleanEx:HS_IMP4 Genevestigator:Q96G21 GermOnline:ENSG00000136718
Uniprot:Q96G21
Length = 291
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 164/292 (56%), Positives = 213/292 (72%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRR RLRREYLYRK+ E +R E+K +++ AL+E + IPTELR E AL+ ++ +
Sbjct: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG
Sbjct: 61 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +G
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
TM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K
Sbjct: 178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT 237
Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
+++EL E+GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL
Sbjct: 238 DH-RNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>WB|WBGene00014083 [details] [associations]
symbol:ZK795.3 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR004154 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 GeneTree:ENSGT00550000074987
HOGENOM:HOG000172063 KO:K14561 OMA:SHFPHGP EMBL:Z83246 PIR:T27998
RefSeq:NP_502404.1 ProteinModelPortal:O62518 SMR:O62518
IntAct:O62518 STRING:O62518 PaxDb:O62518 EnsemblMetazoa:ZK795.3.1
EnsemblMetazoa:ZK795.3.2 GeneID:178207 KEGG:cel:CELE_ZK795.3
UCSC:ZK795.3 CTD:178207 WormBase:ZK795.3 InParanoid:O62518
NextBio:900162 Uniprot:O62518
Length = 292
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 152/292 (52%), Positives = 203/292 (69%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
M+RR RLRRE+++RKSLE K++ L EK+ KI+ AL+ I LR + L + D
Sbjct: 1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDWG 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
+ + D EY A +DPKI++TTSRDPS+ L F KE+K +FPNAQR+NRG
Sbjct: 61 GQ-----QYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYD 115
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ ++++ +A + TD+++ E RG PDG+++CHLPFGPTA+F + NVV RHDI + G
Sbjct: 116 VKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPN---CG 172
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
TM E YPHLI DN SKLG R ILKHLFPVPK D+KRIITF+N DYISFRHH+Y+ +
Sbjct: 173 TMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTE 232
Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
+ +EL E GPRFEL+ YQIKLGT++ + A+ EWV+R Y NT++KR FL
Sbjct: 233 NDGE-VELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>POMBASE|SPAC19A8.07c [details] [associations]
symbol:SPAC19A8.07c "U3 snoRNP-associated protein Imp4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0032040 "small-subunit processome" evidence=ISO]
InterPro:IPR004154 PomBase:SPAC19A8.07c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 GO:GO:0032040 eggNOG:COG2136 HOGENOM:HOG000172063
KO:K14561 OMA:SHFPHGP PIR:T37954 RefSeq:NP_593785.1 STRING:O13823
EnsemblFungi:SPAC19A8.07c.1 GeneID:2542446 KEGG:spo:SPAC19A8.07c
OrthoDB:EOG4897WM NextBio:20803502 Uniprot:O13823
Length = 289
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 145/297 (48%), Positives = 206/297 (69%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRR +R RR+++Y+++ E +E L EK+R +++AL+ K + +L+ E++ L+++
Sbjct: 1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQ-EDSQLQKDYKY- 58
Query: 61 DENTAIPR---SHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 117
DE+ A +++DDEY ER+PK+L+TTSR+PS+ L QF KE++ + PN+ R+NRG
Sbjct: 59 DESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRG 118
Query: 118 GQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRK 177
V+ ++E RA++ TD+V++HEHRG+PDGL+I HLP+GPT F L NVV RHDI +
Sbjct: 119 NIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNT- 177
Query: 178 SIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHI 236
GTM EAYPHLI +N SKLG+R L LFP PK T R++TFAN DYISFRHHI
Sbjct: 178 --GTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHI 235
Query: 237 YEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
Y K G PK + L E GPRFE++L++I LGTVD +A +EW ++PY KR L +
Sbjct: 236 YAKTG-PKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPYQR--HKRDVLAE 289
>CGD|CAL0000877 [details] [associations]
symbol:IMP4 species:5476 "Candida albicans" [GO:0032040
"small-subunit processome" evidence=IEA] [GO:0034457 "Mpp10
complex" evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
[GO:0042134 "rRNA primary transcript binding" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
InterPro:IPR004154 CGD:CAL0000877 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACQ01000109
EMBL:AACQ01000108 eggNOG:COG2136 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_714190.1 RefSeq:XP_714230.1 STRING:Q59X74 GeneID:3644138
GeneID:3644172 KEGG:cal:CaO19.603 KEGG:cal:CaO19.8236
Uniprot:Q59X74
Length = 283
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 141/293 (48%), Positives = 198/293 (67%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
M+R+ R RREYLYRK+L+ +E L EK++++K AL GK + EL +E R I
Sbjct: 1 MIRKQARERREYLYRKALQLQESSLTEKRQQLKAALASGKSLSKELAEDEKLQRDFI--Y 58
Query: 61 DENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQ 119
DE+ I IDDEY+ + DPK+++TTSRDPS L QF KE+K +FPN+ ++NRG
Sbjct: 59 DESEQI---EIDDEYSRLSGISDPKVVITTSRDPSVKLLQFSKEIKLMFPNSLKLNRGNY 115
Query: 120 VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSI 179
+IS+++ TC + +D++L+HEHRGVP L + H P GPTA F L NV RHD+ + +
Sbjct: 116 IISDLVSTCNRVQVSDMILLHEHRGVPSSLTVSHFPHGPTAIFTLHNVKLRHDLPN---L 172
Query: 180 GTMPEAYPHLILDNFKSKLGERTANILKHLFPVP-KADTKRIITFANQSDYISFRHHIYE 238
G + E+YPHLI +NF+S LG+R IL+HLFP K D+ R+ITF N DYIS RHH+Y
Sbjct: 173 GNVSESYPHLIFENFQSDLGKRVVKILQHLFPPGVKKDSSRVITFVNNDDYISVRHHVYV 232
Query: 239 KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
K S+EL EIGPRFE+RLY+I+LG D +A +EW +R ++ T+ ++ +L
Sbjct: 233 KT--KDSVELSEIGPRFEMRLYEIRLGLPDNKDADVEWQMRRFIRTANRKNYL 283
>SGD|S000005019 [details] [associations]
symbol:IMP4 "Component of the SSU processome" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0032040 "small-subunit processome" evidence=IDA]
[GO:0034457 "Mpp10 complex" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;TAS] [GO:0042134 "rRNA primary transcript
binding" evidence=IPI] [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IDA] [GO:0030515 "snoRNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] SGD:S000005019
InterPro:IPR004154 GO:GO:0030515 EMBL:BK006947 EMBL:X86470
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0042134 GO:GO:0032040
GO:GO:0043047 RefSeq:NP_014331.3 GeneID:855656 KEGG:sce:YNL068C
GO:GO:0034457 eggNOG:COG2136 GeneTree:ENSGT00550000074987
HOGENOM:HOG000172063 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4897WM
EMBL:Z71351 PIR:S53904 RefSeq:NP_014324.3 ProteinModelPortal:P53941
SMR:P53941 DIP:DIP-4362N IntAct:P53941 MINT:MINT-497481
STRING:P53941 PaxDb:P53941 PeptideAtlas:P53941 EnsemblFungi:YNL075W
GeneID:855649 KEGG:sce:YNL075W CYGD:YNL075w NextBio:979893
Genevestigator:P53941 GermOnline:YNL075W Uniprot:P53941
Length = 290
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 142/297 (47%), Positives = 201/297 (67%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAA---LRQEI 57
MLRR R RREYLYRK+ E ++ L +K++ IK+AL +GKP+P EL +E+ R +
Sbjct: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
Query: 58 DLEDENTAIPRSHIDDEYANATE--RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMN 115
L++ A +DDEYA AT DP+I++TTSRDPS L+QF KE+K +FPNA R+N
Sbjct: 61 SLKESEEA-DDLQVDDEYA-ATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLN 118
Query: 116 RGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKD 175
RG V+ +++ C+ TD+V++HEHRGVP L I H P GPTA F L NVV RHDI +
Sbjct: 119 RGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIIN 178
Query: 176 RKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRH 234
G E PHLI DNF + LG+R ILKHLF PK D++R+ITFAN+ D+IS R
Sbjct: 179 A---GNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQ 235
Query: 235 HIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
H+Y + + +E+ E+GPRFE+RL++++LGT++ +A +EW +R ++ T+ K+ +L
Sbjct: 236 HVYVRTR--EGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>FB|FBgn0039274 [details] [associations]
symbol:CG11920 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
InterPro:IPR004154 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 eggNOG:COG2136 EMBL:AY060848
ProteinModelPortal:Q95SD3 SMR:Q95SD3 IntAct:Q95SD3 STRING:Q95SD3
PaxDb:Q95SD3 PRIDE:Q95SD3 FlyBase:FBgn0039274 InParanoid:Q95SD3
OrthoDB:EOG4WM39C ArrayExpress:Q95SD3 Bgee:Q95SD3 Uniprot:Q95SD3
Length = 298
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 145/293 (49%), Positives = 200/293 (68%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKE----ALQEGKPIPTELRNEEAALRQE 56
MLR+ R RREYLY K+L ERL + K+KI+E ++ E K I + +N + +L
Sbjct: 1 MLRKQARQRREYLYNKALT--ERL--KSKQKIQETVVKSINENKAIGS--KNVKKSLTAY 54
Query: 57 IDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNR 116
L+ + + ++DEY A DPKI+LTTS +PS+ L F+KEL+ + PNAQ+MNR
Sbjct: 55 KSLKYADEGVDDRTVNDEYHYAGCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNR 114
Query: 117 GGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDR 176
G ++ ++ CRA+ TD ++VHEHRG+ D L++CHLP+GPTA+F + +VV RHDI D
Sbjct: 115 GNYQLTTLMHACRANNVTDFLIVHEHRGILDSLVVCHLPYGPTAFFNISDVVMRHDIPD- 173
Query: 177 KSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHI 236
IG M E PHLI +NFK+ +G RT ILKHLFPVPK +++R+++F N +D I FRHH
Sbjct: 174 --IGHMSEQKPHLIFNNFKTPIGLRTVKILKHLFPVPKENSQRVMSFLNHNDSIIFRHHQ 231
Query: 237 YEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEA-QIEWVIRPYMNTSKKR 288
Y+ K LEL E+GPRF L+LYQIKLGT++ +A EW+ RPYMNTS+KR
Sbjct: 232 YKYVN--KELELTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>UNIPROTKB|G4ND46 [details] [associations]
symbol:MGG_00977 "U3 small nucleolar ribonucleoprotein
IMP4" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004154 EMBL:CM001235 GO:GO:0003676
GO:GO:0030529 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 KO:K14561 RefSeq:XP_003717972.1
ProteinModelPortal:G4ND46 EnsemblFungi:MGG_00977T0 GeneID:2674209
KEGG:mgr:MGG_00977 Uniprot:G4ND46
Length = 295
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 124/298 (41%), Positives = 188/298 (63%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
M+R+ R RR+YLYRK K+ + EKK K++ +L +G+P+ ++ N+E LR + +
Sbjct: 1 MIRKQARERRDYLYRKVAILKDAEINEKKAKMRASLAQGRPLEKDIANDEK-LRADYHYD 59
Query: 61 DENTAIPRSHIDDEYANATER-DPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQ 119
+ +DDEYA + DP++++TTSRDPSA L F KE++ + P A R+NRG
Sbjct: 60 ESRIDREDLDLDDEYAQLSGLVDPRVMVTTSRDPSARLAAFAKEIRLLLPTAIRLNRGNL 119
Query: 120 VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSI 179
++ E++ + +A +D+VL+HE RG P L I H+P GPT F L NV+ RHDI
Sbjct: 120 ILPELVRSVQAAGLSDIVLLHERRGTPTALTISHMPHGPTVSFSLHNVLLRHDIPGSVR- 178
Query: 180 GTMPEAYPHLILDNFKSKLGERTANILKHLFPV--P---KAD-TKRIITFANQSDYISFR 233
GT+ EAYPHL+ D F SKLG+R +LKHLFP P KA + R+ITF N D I R
Sbjct: 179 GTVSEAYPHLVFDGFTSKLGQRIVKVLKHLFPPREPITNKAKMSNRVITFKNIDDVIEVR 238
Query: 234 HHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
HH++ + G +S+EL E+GPR +++++I+ GT++ + +EW + Y TS+K+ +L
Sbjct: 239 HHVFVRTGH-ESVELAEVGPRMSMKVFEIRGGTLENKDGDVEWHLSQYTRTSRKKNYL 295
>GENEDB_PFALCIPARUM|PF08_0055 [details] [associations]
symbol:PF08_0055 "u3 small nucleolar
ribonucleoprotein protein" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR004154 GO:GO:0003676 GO:GO:0006396 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0005732 EMBL:AL844507 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_001349337.1 ProteinModelPortal:Q8IB23 IntAct:Q8IB23
MINT:MINT-1550495 EnsemblProtists:PF08_0055:mRNA GeneID:2655255
KEGG:pfa:PF08_0055 EuPathDB:PlasmoDB:PF3D7_0818800 OMA:KRIMNIF
ProtClustDB:CLSZ2433740 Uniprot:Q8IB23
Length = 362
Score = 472 (171.2 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 96/220 (43%), Positives = 142/220 (64%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRRNIRLR+EYLY K +E +++ EK + IKE+ + K I +L++EE+ LR+ ++L
Sbjct: 1 MLRRNIRLRKEYLYLKKVEDEKKKYAEKIKSIKESYDKNKKIRGDLKDEESELRKNMNLY 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
DE + R +DDEY +P++L+TTSR+PS+ L F KELK + PN++++NRG
Sbjct: 61 DEKS-FDRK-VDDEYFFCGLENPRVLITTSRNPSSTLENFAKELKLIIPNSEKINRGSYF 118
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
I +I+ R + TDV+++HE++G+P LIICHLPFGPT + + + R + ++ I
Sbjct: 119 IKDILNFARKNNITDVIILHEYKGIPRNLIICHLPFGPTLFCTIKDCKMRCEFNEK--ID 176
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKR 219
+ PHLI NF S LG+R NI K+LFP V KR
Sbjct: 177 NISLCTPHLIFHNFHSDLGKRIMNIFKYLFPPVTMRTNKR 216
Score = 150 (57.9 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 214 KADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQ 273
K + R+I F N++D I FRH+ +EK + LKEIGPRF +Y+I T+D
Sbjct: 287 KYENNRVIVFFNKNDIIYFRHYNWEKNQ-TNEIVLKEIGPRFSFVVYKINKETLDSLNED 345
Query: 274 IEWVIRPYMNTSK 286
E++ RP+MN+ K
Sbjct: 346 YEYIYRPFMNSRK 358
>UNIPROTKB|Q8IB23 [details] [associations]
symbol:PF08_0055 "U3 small nucleolar ribonucleoprotein
protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR004154 GO:GO:0003676 GO:GO:0006396 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0005732 EMBL:AL844507 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_001349337.1 ProteinModelPortal:Q8IB23 IntAct:Q8IB23
MINT:MINT-1550495 EnsemblProtists:PF08_0055:mRNA GeneID:2655255
KEGG:pfa:PF08_0055 EuPathDB:PlasmoDB:PF3D7_0818800 OMA:KRIMNIF
ProtClustDB:CLSZ2433740 Uniprot:Q8IB23
Length = 362
Score = 472 (171.2 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 96/220 (43%), Positives = 142/220 (64%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRRNIRLR+EYLY K +E +++ EK + IKE+ + K I +L++EE+ LR+ ++L
Sbjct: 1 MLRRNIRLRKEYLYLKKVEDEKKKYAEKIKSIKESYDKNKKIRGDLKDEESELRKNMNLY 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
DE + R +DDEY +P++L+TTSR+PS+ L F KELK + PN++++NRG
Sbjct: 61 DEKS-FDRK-VDDEYFFCGLENPRVLITTSRNPSSTLENFAKELKLIIPNSEKINRGSYF 118
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
I +I+ R + TDV+++HE++G+P LIICHLPFGPT + + + R + ++ I
Sbjct: 119 IKDILNFARKNNITDVIILHEYKGIPRNLIICHLPFGPTLFCTIKDCKMRCEFNEK--ID 176
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKR 219
+ PHLI NF S LG+R NI K+LFP V KR
Sbjct: 177 NISLCTPHLIFHNFHSDLGKRIMNIFKYLFPPVTMRTNKR 216
Score = 150 (57.9 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 214 KADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQ 273
K + R+I F N++D I FRH+ +EK + LKEIGPRF +Y+I T+D
Sbjct: 287 KYENNRVIVFFNKNDIIYFRHYNWEKNQ-TNEIVLKEIGPRFSFVVYKINKETLDSLNED 345
Query: 274 IEWVIRPYMNTSK 286
E++ RP+MN+ K
Sbjct: 346 YEYIYRPFMNSRK 358
>UNIPROTKB|Q8AVP1 [details] [associations]
symbol:rpf1 "Ribosome production factor 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] InterPro:IPR004154
GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 KO:K14846 HOVERGEN:HBG083559 EMBL:BC041557
RefSeq:NP_001080272.1 UniGene:Xl.1785 ProteinModelPortal:Q8AVP1
GeneID:379964 KEGG:xla:379964 CTD:379964 Uniprot:Q8AVP1
Length = 343
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 108/293 (36%), Positives = 171/293 (58%)
Query: 9 RREYLY--RKSLEGKERLLYEKKRKI-KEALQEG---KPIPTELRNEEAALRQEIDLEDE 62
RR++++ K + KE+L+ KKRK +EAL + KP+P + N+ +D DE
Sbjct: 56 RRQFMFIKLKQEKRKEKLILRKKRKKEREALGDKAPPKPVPKTIENQRVYDETTVDPADE 115
Query: 63 NTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
A+ + DE+A + PKIL+TTS P +F ++L + PN+ R G
Sbjct: 116 EVALDEA--TDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLA 173
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ +II C + ++TD+++++E R VP+GL++CHLP GPTA+F + NV R ++K RK G
Sbjct: 174 LKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMK-RK--G 230
Query: 181 TMP-EAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYE 238
P E P +IL+NF ++LG + L+P P +++ TF NQ DYI FR+H Y
Sbjct: 231 KEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFRYHRYL 290
Query: 239 KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKF 290
+ K + ++E+GPRF L+L ++ GT D + EWV + + M+TS+ RKF
Sbjct: 291 FKS-EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSR-RKF 341
>WB|WBGene00009711 [details] [associations]
symbol:F44G4.1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR004154 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
eggNOG:COG2136 EMBL:Z49910 GeneTree:ENSGT00550000074691 KO:K14846
HOGENOM:HOG000172062 PIR:B88252 PIR:T19409 RefSeq:NP_495918.1
ProteinModelPortal:P54073 STRING:P54073 PaxDb:P54073
EnsemblMetazoa:F44G4.1 GeneID:174434 KEGG:cel:CELE_F44G4.1
UCSC:F44G4.1 CTD:174434 WormBase:F44G4.1 InParanoid:P54073
OMA:RDEDATM NextBio:884024 Uniprot:P54073
Length = 384
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 106/287 (36%), Positives = 166/287 (57%)
Query: 15 RKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEID---LEDENTAIPRSHI 71
+++L +R ++ +I++ L E P E+ ++R E D + +E+ +
Sbjct: 106 KRALRKDKRARQGERAQIRDELGESAP-QKEVPKTIESMR-EYDATMVNEEDDEVEHDEA 163
Query: 72 DDEYANATERD--PKILLTTSRDPSAPLT--QFVKELKFVFPNAQRMNRGGQVISEIIET 127
+DE+A R+ PK+++T + P A +T +F EL+ PN++ R ++ IIE
Sbjct: 164 NDEFAPYFNRETSPKVMITMT--PKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQ 221
Query: 128 CRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYP 187
+ EFTD+++VHE R P+G+I CHLP GPTAYF + ++ D+K G +P
Sbjct: 222 AKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLK---KFGESTSHFP 278
Query: 188 HLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYE-KQGGPKS 245
+IL+NF ++LG A +L LFP PK +R++TF NQ DYI FRHH YE K+ G K+
Sbjct: 279 EVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKA 338
Query: 246 LELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKFL 291
L E+GPRF LRL ++ GT D + EWV++ + M TS++R FL
Sbjct: 339 A-LLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384
>UNIPROTKB|E2RLN4 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
KO:K14846 CTD:80135 OMA:IENQRVY EMBL:AAEX03004866
RefSeq:XP_537096.1 ProteinModelPortal:E2RLN4
Ensembl:ENSCAFT00000032351 GeneID:479972 KEGG:cfa:479972
NextBio:20855075 Uniprot:E2RLN4
Length = 349
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 108/292 (36%), Positives = 165/292 (56%)
Query: 9 RREYLYR--KSLEGKERLLYEKK-RKIKEALQEG---KPIPTELRNEEAALRQEIDLEDE 62
RR ++ K + KE+L +KK +K +EAL + KP+P + N+ +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAIKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETIVDPNDE 121
Query: 63 NTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
A + DE+A+ R PKIL+TTS P + ++L V PN+ R G
Sbjct: 122 EVAYDEA--TDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLA 179
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ +II C + +FTD+++++E R +P+GLI+ HLP GPTA+F + +V R +IK R
Sbjct: 180 LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPSGPTAHFKMSSVRLRKEIKRRGKDP 239
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEK 239
T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y
Sbjct: 240 T--EHIPEVILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIF 297
Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKF 290
+ K + ++E+GPRF L+L ++ GT D + EWV +P M+TS+ RKF
Sbjct: 298 KS-EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSR-RKF 347
>UNIPROTKB|F1NRK2 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
OMA:IENQRVY EMBL:AADN02012801 IPI:IPI00584227
Ensembl:ENSGALT00000014300 Uniprot:F1NRK2
Length = 347
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 111/293 (37%), Positives = 166/293 (56%)
Query: 9 RREYLYR--KSLEGKERL-LYEKKRKIKEALQEGKP---IPTELRNEEAALRQEIDLEDE 62
RR +++ K + KE+L L +K+RK +EAL + P IP + N+ +D DE
Sbjct: 60 RRHFMFLRWKQQQRKEKLALKKKRRKEREALGDKAPPKAIPKTIENQRIYDETTVDPNDE 119
Query: 63 NTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
A + DE+A R PKIL+TTS P +F ++L V PN+ R G
Sbjct: 120 EVAFDIA--TDEFAPYFNRQTVPKILITTSDRPRGRTVRFCEQLSTVIPNSHVYYRRGLA 177
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ II C A +FTD+++++E R +P+GL++ HLP GPTA+F + +V R +IK RK G
Sbjct: 178 LKRIIPQCIARDFTDLIVINEDRKIPNGLVLSHLPDGPTAHFRMSSVRLRKEIK-RK--G 234
Query: 181 TMP-EAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYE 238
P E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y
Sbjct: 235 KEPTEHVPEVILNNFTTRLGHSIGRMFASLFPHDPQFIGRQVATFHNQRDYIFFRFHRYI 294
Query: 239 KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVI-RPYMNTSKKRKF 290
+ K + ++E+GPRF L+L ++ GT D + EW+ R M+TS+ RKF
Sbjct: 295 FKS-EKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEWIHKRREMDTSR-RKF 345
>UNIPROTKB|A4FUG9 [details] [associations]
symbol:BXDC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 eggNOG:COG2136
GeneTree:ENSGT00550000074691 KO:K14846 CTD:80135
HOGENOM:HOG000172062 HOVERGEN:HBG083559 OMA:IENQRVY
OrthoDB:EOG40VVQ0 EMBL:DAAA02008080 EMBL:BC114877 IPI:IPI00706366
RefSeq:NP_001076886.1 UniGene:Bt.18412 STRING:A4FUG9
Ensembl:ENSBTAT00000010676 GeneID:513081 KEGG:bta:513081
InParanoid:A4FUG9 NextBio:20870694 Uniprot:A4FUG9
Length = 349
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 108/292 (36%), Positives = 165/292 (56%)
Query: 9 RREYLYR--KSLEGKERLLYEKK-RKIKEALQEG---KPIPTELRNEEAALRQEIDLEDE 62
RR ++ K + KE+L +KK +K +EAL + KP+P + N+ +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETIVDPNDE 121
Query: 63 NTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
A + DE+A+ R PKIL+TTS P + ++L V PN+ R G
Sbjct: 122 EVAYDEA--TDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLA 179
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ +II C + +FTD+++++E R +P+GLI+ HLP GPTA+F + +V R +IK R
Sbjct: 180 LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDP 239
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEK 239
T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y
Sbjct: 240 T--EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIF 297
Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKF 290
+ K + ++E+GPRF L+L ++ GT D + EWV +P M+TS+ RKF
Sbjct: 298 KS-EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSR-RKF 347
>UNIPROTKB|Q9H9Y2 [details] [associations]
symbol:RPF1 "Ribosome production factor 1" species:9606
"Homo sapiens" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR004154 GO:GO:0005730 GO:GO:0003723 GO:GO:0019843
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AL359762 eggNOG:COG2136
KO:K14846 EMBL:AF322053 EMBL:AK022537 EMBL:AL844170 EMBL:BC016051
EMBL:CR627468 EMBL:AL359584 IPI:IPI00292221 PIR:T50616
RefSeq:NP_079341.2 UniGene:Hs.481202 ProteinModelPortal:Q9H9Y2
STRING:Q9H9Y2 PhosphoSite:Q9H9Y2 DMDM:71153718 SWISS-2DPAGE:Q9H9Y2
PaxDb:Q9H9Y2 PRIDE:Q9H9Y2 DNASU:80135 Ensembl:ENST00000370654
Ensembl:ENST00000370656 GeneID:80135 KEGG:hsa:80135 UCSC:uc001djv.4
CTD:80135 GeneCards:GC01P084945 HGNC:HGNC:30350 HPA:HPA024642
neXtProt:NX_Q9H9Y2 PharmGKB:PA165752348 HOGENOM:HOG000172062
HOVERGEN:HBG083559 InParanoid:Q9H9Y2 OMA:IENQRVY OrthoDB:EOG40VVQ0
ChiTaRS:RPF1 GenomeRNAi:80135 NextBio:70391 Bgee:Q9H9Y2
CleanEx:HS_BXDC5 Genevestigator:Q9H9Y2 GermOnline:ENSG00000117133
Uniprot:Q9H9Y2
Length = 349
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 108/292 (36%), Positives = 164/292 (56%)
Query: 9 RREYLYR--KSLEGKERLLYEKK-RKIKEALQEG---KPIPTELRNEEAALRQEIDLEDE 62
RR ++ K + KE+L +KK +K +EAL + KP+P + N+ +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
Query: 63 NTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
A + DE+A+ + PKIL+TTS P + ++L V PN+ R G
Sbjct: 122 EVAYDEA--TDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLA 179
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ +II C A +FTD+++++E R P+GLI+ HLP GPTA+F + +V R +IK R
Sbjct: 180 LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDP 239
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEK 239
T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y
Sbjct: 240 T--EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIF 297
Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKF 290
+ K + ++E+GPRF L+L ++ GT D + EWV +P M+TS+ RKF
Sbjct: 298 RS-EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSR-RKF 347
>UNIPROTKB|I3LN44 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
OMA:IENQRVY Ensembl:ENSSSCT00000032078 Uniprot:I3LN44
Length = 339
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 108/292 (36%), Positives = 165/292 (56%)
Query: 9 RREYLYR--KSLEGKERLLYEKK-RKIKEALQEG---KPIPTELRNEEAALRQEIDLEDE 62
RR ++ K + KE+L +KK +K +EAL + KP+P + N+ +D DE
Sbjct: 52 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETIVDPNDE 111
Query: 63 NTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
A + DE+A+ R PKIL+TTS P + ++L V PN+ R G
Sbjct: 112 EVAYDEA--TDEFASYFNRQTCPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLA 169
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ +II C + +FTD+++++E R +P+GLI+ HLP GPTA+F + +V R +IK R
Sbjct: 170 LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDP 229
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEK 239
T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y
Sbjct: 230 T--EHTPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIF 287
Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKF 290
+ K + ++E+GPRF L+L ++ GT D + EWV +P M+TS+ RKF
Sbjct: 288 KS-EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSR-RKF 337
>UNIPROTKB|Q5R631 [details] [associations]
symbol:RPF1 "Ribosome production factor 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 GO:GO:0019843 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
KO:K14846 CTD:80135 HOVERGEN:HBG083559 EMBL:CR860667
RefSeq:NP_001126626.1 UniGene:Pab.1862 ProteinModelPortal:Q5R631
GeneID:100173623 KEGG:pon:100173623 InParanoid:Q5R631
Uniprot:Q5R631
Length = 349
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 108/292 (36%), Positives = 164/292 (56%)
Query: 9 RREYLYR--KSLEGKERLLYEKK-RKIKEALQEG---KPIPTELRNEEAALRQEIDLEDE 62
RR ++ K + KE+L +KK +K +EAL + KP+P + N+ +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
Query: 63 NTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
A + DE+A+ + PKIL+TTS P + ++L V PN+ R G
Sbjct: 122 EVAYDEA--TDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLA 179
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ +II C A +FTD+++++E R P+GLI+ HLP GPTA+F + +V R +IK R
Sbjct: 180 LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDP 239
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEK 239
T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y
Sbjct: 240 T--EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIF 297
Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKF 290
+ K + ++E+GPRF L+L ++ GT D + EWV +P M+TS+ RKF
Sbjct: 298 RS-EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSR-RKF 347
>MGI|MGI:1917535 [details] [associations]
symbol:Rpf1 "ribosome production factor 1 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR004154 MGI:MGI:1917535
GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 GeneTree:ENSGT00550000074691
KO:K14846 CTD:80135 HOGENOM:HOG000172062 HOVERGEN:HBG083559
OMA:IENQRVY OrthoDB:EOG40VVQ0 EMBL:AK171079 EMBL:BC028802
EMBL:BC056165 EMBL:BC089369 IPI:IPI00380313 RefSeq:NP_081608.1
RefSeq:NP_081647.2 UniGene:Mm.28128 ProteinModelPortal:Q7TND5
STRING:Q7TND5 PhosphoSite:Q7TND5 PaxDb:Q7TND5 PRIDE:Q7TND5
Ensembl:ENSMUST00000029838 GeneID:70285 KEGG:mmu:70285
UCSC:uc008rrl.2 InParanoid:Q7TND5 NextBio:331302 Bgee:Q7TND5
CleanEx:MM_BXDC5 Genevestigator:Q7TND5
GermOnline:ENSMUSG00000028187 Uniprot:Q7TND5
Length = 349
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 108/292 (36%), Positives = 164/292 (56%)
Query: 9 RREYLYR--KSLEGKERLLYEKK-RKIKEALQEG---KPIPTELRNEEAALRQEIDLEDE 62
RR ++ K + KE+L +KK +K +EAL + KP+P + N+ +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
Query: 63 NTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
A + DE+A+ R PKIL+TTS P + ++L V P++ R G
Sbjct: 122 EVAYDEA--TDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLA 179
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ +II C A +FTD+++++E R P+GLI+ HLP GPTA+F + +V R +IK R
Sbjct: 180 LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDP 239
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEK 239
T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y
Sbjct: 240 T--EHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIF 297
Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKF 290
+ K + ++E+GPRF L+L ++ GT D + EWV +P M+TS+ RKF
Sbjct: 298 KS-EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSR-RKF 347
>RGD|1559755 [details] [associations]
symbol:Rpf1 "ribosome production factor 1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003723 "RNA
binding" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
evidence=IEA;ISO;ISS] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] InterPro:IPR004154
RGD:1559755 GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 HOVERGEN:HBG083559 OrthoDB:EOG40VVQ0
EMBL:RNOR03268045 EMBL:BC086515 IPI:IPI00915544 UniGene:Rn.63896
ProteinModelPortal:Q5RJS9 STRING:Q5RJS9 InParanoid:Q5RJS9
ArrayExpress:Q5RJS9 Genevestigator:Q5RJS9 Uniprot:Q5RJS9
Length = 345
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 100/278 (35%), Positives = 154/278 (55%)
Query: 9 RREYLYR--KSLEGKERLLYEKK-RKIKEALQEG---KPIPTELRNEEAALRQEIDLEDE 62
RR ++ K + KE+L +KK ++ +EAL + KP+P + N+ +D DE
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKREREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
Query: 63 NTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
A + DE+A+ R PKIL+TTS P + ++L V P++ R G
Sbjct: 122 EVAYDEA--TDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLA 179
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ +II C A +FTD+++++E R P+GLI+ HLP GPTA+F + +V R +IK R
Sbjct: 180 LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDP 239
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEK 239
T E P +IL+NF ++LG + LFP P+ +++ TF NQ DYI FR H Y
Sbjct: 240 T--EHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIF 297
Query: 240 QGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWV 277
+ K + ++E+GPRF L+L ++ GT D + EWV
Sbjct: 298 KS-EKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWV 334
>ZFIN|ZDB-GENE-040625-177 [details] [associations]
symbol:rpf1 "ribosome production factor 1 homolog
(S. cerevisiae)" species:7955 "Danio rerio" [GO:0005730 "nucleolus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] InterPro:IPR004154
ZFIN:ZDB-GENE-040625-177 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GeneTree:ENSGT00550000074691 EMBL:CR854846 EMBL:CR848761
IPI:IPI00488496 Ensembl:ENSDART00000143436 Bgee:F1QQ11
Uniprot:F1QQ11
Length = 352
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 98/289 (33%), Positives = 158/289 (54%)
Query: 9 RREYLYRKSLEGKERLLYEKKRKIKEALQEGKP---IPTELRNEEAALRQEIDLEDENTA 65
RR ++ K E K + E K+K ++AL + P +P + N+ ++ EDE A
Sbjct: 68 RRHTMFLKLKEEKRKKRMELKKKERKALGDKAPPKEVPKTIENQRIYDETTVNPEDEEVA 127
Query: 66 IPRSHIDDEYANATER--DPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISE 123
DE++ R +PK+L+TTS P +F +L V P+A R G + +
Sbjct: 128 FDEG--TDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKK 185
Query: 124 IIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMP 183
+I C + FT +++++E R VP+G+++CHLP GPTA+F + +V R ++K R G P
Sbjct: 186 VIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRR---GKNP 242
Query: 184 -EAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQG 241
E P +IL+NF ++LG + LFP P+ +++ TF NQ D+I FR H Y +
Sbjct: 243 TEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFKN 302
Query: 242 GPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 290
K + ++E+GPRF L+L ++ GT D + EWV + + S +RKF
Sbjct: 303 -EKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKF 350
>TAIR|locus:2116992 [details] [associations]
symbol:MEE49 "AT4G01560" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA;IMP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0009845 "seed germination" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0009933
"meristem structural organization" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0019915
"lipid storage" evidence=RCA] [GO:0048366 "leaf development"
evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
[GO:0050826 "response to freezing" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR004154 GO:GO:0005829
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009793 EMBL:AL161492
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 KO:K14846 HOGENOM:HOG000172062 OMA:IENQRVY
EMBL:AY050341 EMBL:AY086463 EMBL:BT020609 IPI:IPI00523270
PIR:C85020 RefSeq:NP_567213.1 UniGene:At.3828
ProteinModelPortal:Q9M125 STRING:Q9M125 PRIDE:Q9M125
EnsemblPlants:AT4G01560.1 GeneID:828136 KEGG:ath:AT4G01560
TAIR:At4g01560 InParanoid:Q9M125 PhylomeDB:Q9M125
ProtClustDB:CLSN2689273 ArrayExpress:Q9M125 Genevestigator:Q9M125
Uniprot:Q9M125
Length = 343
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 107/297 (36%), Positives = 158/297 (53%)
Query: 14 YRKSLEGKERLLYEKKRKIKEALQEG-----KPIPTELRNEEAALRQEIDLEDENTAIPR 68
+ K LE K++ + + K AL+ G K IP + N + +DE
Sbjct: 54 HEKKLE-KQKKIRARDAAEKRALELGEEPPQKMIPKTIENTRESDETVCRPDDEELF--- 109
Query: 69 SHID-DEYANATERD--PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEII 125
+ ID DE+ R+ PK+LLTT R S + EL V PN+ RG + +I+
Sbjct: 110 ADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALISELLSVIPNSHYQKRGTYDLKKIV 169
Query: 126 ETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEA 185
E +FT +++VH +R PD L+I LP GPTA+F L N+V R DIK+ G
Sbjct: 170 EYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAHFKLSNLVLRKDIKNH---GNPTSH 226
Query: 186 YPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHH--IYEKQ-- 240
P L+L+NF ++LG R + LFP P +R++TF NQ D+I FRHH I+E +
Sbjct: 227 QPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTFHNQRDFIFFRHHRYIFETKES 286
Query: 241 ----GGPKSLE--LKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
G ++++ L+E GPRF L+L ++ GT D + EWV +P M+TS++R FL
Sbjct: 287 KSDKGKEETIKPRLQECGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343
>FB|FBgn0032408 [details] [associations]
symbol:CG6712 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR004154 GO:GO:0005730 EMBL:AE014134
GO:GO:0003723 GO:GO:0019843 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
eggNOG:COG2136 EMBL:AY051683 RefSeq:NP_477479.1 UniGene:Dm.8705
ProteinModelPortal:Q9VKB4 STRING:Q9VKB4 PaxDb:Q9VKB4 PRIDE:Q9VKB4
EnsemblMetazoa:FBtr0080364 GeneID:34631 KEGG:dme:Dmel_CG6712
UCSC:CG6712-RA FlyBase:FBgn0032408 GeneTree:ENSGT00550000074691
InParanoid:Q9VKB4 KO:K14846 OMA:IFFRHYR OrthoDB:EOG4MPG5T
PhylomeDB:Q9VKB4 GenomeRNAi:34631 NextBio:789413 Bgee:Q9VKB4
GermOnline:CG6712 Uniprot:Q9VKB4
Length = 394
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 106/297 (35%), Positives = 164/297 (55%)
Query: 4 RNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLED-E 62
RN + +R LY+K + K + +++R ++A P T E + +L D +
Sbjct: 104 RN-KEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREKDQTEVANLNDSD 162
Query: 63 NTAIPRSHIDDEYANATER--DPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
N + + D++++ ER +PK+L+T + +P +F EL +FPNA R
Sbjct: 163 NEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSS 222
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIK-DRKSI 179
+ +I ++ EFTDVV+V+E R P+GL++ HLP GPTA+F L NV DIK D K I
Sbjct: 223 VKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEI 282
Query: 180 GTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYE 238
+ P +IL+NF ++LG +L LF P+ +R +TF NQ DYI FRHH YE
Sbjct: 283 ---TKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYE 339
Query: 239 --KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVI--RPYMNTSKKRKFL 291
K+G K ++L+E+GPRF L+L ++ GT D W+I + + S++R FL
Sbjct: 340 FTKEG--KRVKLRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394
>ASPGD|ASPL0000059866 [details] [associations]
symbol:AN0647 species:162425 "Emericella nidulans"
[GO:0032040 "small-subunit processome" evidence=IEA] [GO:0034457
"Mpp10 complex" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0004812 "aminoacyl-tRNA ligase
activity" evidence=IEA] InterPro:IPR004154 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EnsemblFungi:CADANIAT00002029 OMA:NESAADI Uniprot:C8VS07
Length = 144
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 68/146 (46%), Positives = 95/146 (65%)
Query: 149 LIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKH 208
+ I HLP GPTA F L NVV R DI + GT+ E+YPHLI + FK+KLG+R ILKH
Sbjct: 1 MTISHLPHGPTASFSLHNVVLRADIPNAAR-GTVSESYPHLIFEGFKTKLGKRVVQILKH 59
Query: 209 LFPVPKADT--KRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGT 266
LFP +A R++TF N+ D I RHH++ K G K EL E+GPR +RL++I+ G+
Sbjct: 60 LFPPREAGKVGNRVVTFVNKEDSIEVRHHVFVKTGY-KDAELAEVGPRMTMRLFEIRGGS 118
Query: 267 VDQ-SEAQIEWVIRPYMNTSKKRKFL 291
+++ S +EW + Y TS+K+ +L
Sbjct: 119 LEKGSSGDVEWALTQYTRTSRKKDYL 144
>POMBASE|SPAC4F8.04 [details] [associations]
symbol:SPAC4F8.04 "Brix domain protein Rpf1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000027 "ribosomal
large subunit assembly" evidence=ISO] [GO:0000463 "maturation of
LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0042134 "rRNA primary transcript binding"
evidence=ISO] [GO:0042254 "ribosome biogenesis" evidence=ISO]
InterPro:IPR004154 PomBase:SPAC4F8.04 EMBL:CU329670 GO:GO:0005730
GO:GO:0000463 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0042134 GO:GO:0000027
GO:GO:0000466 GO:GO:0005732 eggNOG:COG2136 KO:K14846
HOGENOM:HOG000172062 OMA:IENQRVY OrthoDB:EOG4JT3FB PIR:T38834
RefSeq:NP_593868.1 ProteinModelPortal:O14180 STRING:O14180
EnsemblFungi:SPAC4F8.04.1 GeneID:2543503 KEGG:spo:SPAC4F8.04
NextBio:20804513 Uniprot:O14180
Length = 306
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 92/282 (32%), Positives = 149/282 (52%)
Query: 21 KERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI-DDEYAN-- 77
KER E+K K+ L+ + IP + E + E +ED+ ++ + DDE++
Sbjct: 30 KERAKEEEKDPEKKRLRLSENIPATI--ESKRVYDETIIEDKPDEELQAELKDDEFSAYF 87
Query: 78 ATERD-PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV-ISEIIETCRAHEFTD 135
+ ER PK+L+TTS+ S F EL FPNA+ R G + + EI E +TD
Sbjct: 88 SEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTD 147
Query: 136 VVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDR-KSIGTMPEAYPHLILDNF 194
+++++E R + L + HLP GP+ YF L N+ T +I + +S G +PE LI++NF
Sbjct: 148 LLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPE----LIINNF 203
Query: 195 KSKLGERTANILKHLF-PVPKADTKRIITFANQSDYISFRHHIY---EKQGGPKSLE--L 248
++LG A + LF P+ ++++T Q D++ FR H Y EK P + L
Sbjct: 204 STRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGL 263
Query: 249 KEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 290
+E+GPRF +RL ++ G D+ E ++ + S +RKF
Sbjct: 264 QELGPRFTMRLRMVQKGVWDRKEGEVFFESNAG-EESDRRKF 304
>SGD|S000001130 [details] [associations]
symbol:RPF1 "Protein involved in assembly and export of the
large ribosomal subunit" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA;IPI] [GO:0000055 "ribosomal large subunit export
from nucleus" evidence=IMP] [GO:0000027 "ribosomal large subunit
assembly" evidence=IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042134 "rRNA primary
transcript binding" evidence=IPI] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR004154 SGD:S000001130 GO:GO:0005730 EMBL:BK006934
GO:GO:0030687 GO:GO:0000055 GO:GO:0000463 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 GO:GO:0000466 EMBL:U00060
eggNOG:COG2136 GeneTree:ENSGT00550000074691 KO:K14846
HOGENOM:HOG000172062 OMA:IENQRVY PIR:S46718 RefSeq:NP_011956.1
ProteinModelPortal:P38805 DIP:DIP-6511N IntAct:P38805
MINT:MINT-634203 STRING:P38805 PaxDb:P38805 EnsemblFungi:YHR088W
GeneID:856488 KEGG:sce:YHR088W CYGD:YHR088w OrthoDB:EOG4JT3FB
NextBio:982188 Genevestigator:P38805 GermOnline:YHR088W
Uniprot:P38805
Length = 295
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 93/300 (31%), Positives = 152/300 (50%)
Query: 7 RLRREYLYR--KSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENT 64
+L+R+ ++ K + KER +KR KE + P ELR E L++ + ENT
Sbjct: 12 KLKRQEIFADIKHEKNKERHTMRRKRA-KE--ERENP---ELR--EQRLKENVTQTIENT 63
Query: 65 AIPRSHIDDE----------YANATERDP-KILLTTSRDPSAPLTQFVKELKFVFPNAQR 113
+ I+ E Y N+ +P KI LTT+ + +F L + PN
Sbjct: 64 RVYDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPNVTF 123
Query: 114 MNRG-GQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHD 172
+ R G + EI + C FTD+V+++E + GL HLP GPT YF L + V +
Sbjct: 124 VKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV---E 180
Query: 173 IKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYIS 231
+K G P LIL+NF+++LG+ + + + P P + +++IT NQ DYI
Sbjct: 181 VKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIF 240
Query: 232 FRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
FR H Y + + + L+E+GP+F L+L +++ G +++E W +P M+ KK+ +L
Sbjct: 241 FRRHRYVFKDNER-VGLQELGPQFTLKLKRLQRGIKEETE----WEHKPEMDKEKKKFYL 295
>DICTYBASE|DDB_G0285829 [details] [associations]
symbol:bxdc5 "brix domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0042134 "rRNA primary
transcript binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0000027 "ribosomal large subunit assembly"
evidence=ISS] InterPro:IPR004154 dictyBase:DDB_G0285829
GO:GO:0005730 GenomeReviews:CM000153_GR InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 EMBL:AAFI02000080 eggNOG:COG2136
KO:K14846 OMA:IENQRVY RefSeq:XP_638044.1 ProteinModelPortal:Q54MN3
STRING:Q54MN3 EnsemblProtists:DDB0232092 GeneID:8625308
KEGG:ddi:DDB_G0285829 InParanoid:Q54MN3 Uniprot:Q54MN3
Length = 317
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 80/290 (27%), Positives = 146/290 (50%)
Query: 3 RRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDE 62
+R + +++ +K+ K R +K+R+I K +P + + A +D E++
Sbjct: 32 KRVLLVQKLQAAKKTAREKARKQRKKEREILGDAAPAKEVPRTIESMRRADETIVDTEND 91
Query: 63 NTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVIS 122
+ D+ + R PKI++TT++ + +F + + PN + +R +
Sbjct: 92 KEFEEEINKDEFESYFDGRVPKIVVTTNQRSTKEAVEFAQVFTKLLPNCEFFHRRKYHLK 151
Query: 123 EIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTM 182
EI++ C ++TD+++V+E +G+ D L I HLP GPTA F L N+V DI G M
Sbjct: 152 EIVQFCNNRDYTDIIVVNETKGIIDELTISHLPNGPTAVFRLTNLVMPEDIPGG---GEM 208
Query: 183 PEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQG 241
LI++NF ++LG + +F P +R+ T NQ D+I FR H Y +
Sbjct: 209 TSHKAELIVNNFTTRLGHSIGRMFASMFAQDPNFKGRRVCTLHNQRDFIFFRQHRYIFES 268
Query: 242 GPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
+ ++E+GPRF L+L ++ G+ + S + + + M+ +K KF+
Sbjct: 269 -KEDANVQELGPRFTLKLKSLQKGSFNTSTGEYIHLHQHNMDVDRK-KFV 316
>CGD|CAL0003496 [details] [associations]
symbol:RPF1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0042134 "rRNA primary transcript
binding" evidence=IEA] [GO:0000055 "ribosomal large subunit export
from nucleus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR004154 CGD:CAL0003496 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACQ01000023
EMBL:AACQ01000025 eggNOG:COG2136 KO:K14846 HOGENOM:HOG000172062
RefSeq:XP_720192.1 RefSeq:XP_720420.1 ProteinModelPortal:Q5AFD8
STRING:Q5AFD8 GeneID:3637890 GeneID:3638097 KEGG:cal:CaO19.10184
KEGG:cal:CaO19.2667 Uniprot:Q5AFD8
Length = 296
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 90/301 (29%), Positives = 155/301 (51%)
Query: 4 RNIR--LRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAA--LRQEID- 58
+NI+ RR+ ++ + K + ++ ++ E +E + P ELR E A + ID
Sbjct: 10 KNIKNKQRRQKVFAEIKHEKNK---QRHKQRAERAKEERENP-ELREERIAANIPDTIDS 65
Query: 59 --LEDENTAIPRSHIDDEY----ANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQ 112
+ DE A DDE+ N E +PKILLTTS + P +F + PN
Sbjct: 66 KRIYDETIAAEVEG-DDEFQSYFTNLLE-EPKILLTTSANAKKPAYEFADMIMDFLPNVT 123
Query: 113 RMNRGGQ-VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRH 171
+ R + + ++ + C +FT +++++E + +G+ + +LP GPT YF + ++V
Sbjct: 124 FIKRKKEYTMQDMAKYCSNRDFTALLVINEDKKKVNGITLINLPEGPTFYFSITSIV--- 180
Query: 172 DIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYI 230
D K K G + P ++L+NF S+LG+ + + +FP P+ +++IT NQ DYI
Sbjct: 181 DGKRIKGHGKAGDYLPEIVLNNFNSRLGKTVGRLFQSIFPHKPELQGRQVITLHNQRDYI 240
Query: 231 SFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 290
FR H Y + K + L+E+GP+F L+L +++ G + W RP M KK+ +
Sbjct: 241 FFRRHRYIFRNEEK-VGLQELGPQFTLKLRRMQKGV----RGDVVWEHRPDMERDKKKFY 295
Query: 291 L 291
L
Sbjct: 296 L 296
>ASPGD|ASPL0000077745 [details] [associations]
symbol:AN8834 species:162425 "Emericella nidulans"
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0042134 "rRNA primary transcript binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030687 "preribosome,
large subunit precursor" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0004812
"aminoacyl-tRNA ligase activity" evidence=IEA] InterPro:IPR004154
EMBL:BN001303 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACD01000162 eggNOG:COG2136
KO:K14846 HOGENOM:HOG000172062 OrthoDB:EOG4JT3FB RefSeq:XP_682103.1
ProteinModelPortal:Q5AS96 STRING:Q5AS96
EnsemblFungi:CADANIAT00006223 GeneID:2868340 KEGG:ani:AN8834.2
OMA:SGQEWEW Uniprot:Q5AS96
Length = 435
Score = 217 (81.4 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 58/166 (34%), Positives = 87/166 (52%)
Query: 79 TERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV------ISEIIETCRAHE 132
++R PKIL+TTS + + L + L +FPN+ + R I EI + E
Sbjct: 204 SQRPPKILITTSLNST--LHHEAEILTQLFPNSVYIRRTAHAHAHKFSIREIAKFASNRE 261
Query: 133 FTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILD 192
+T ++++ E P GL I HLP GP +F + N V I G E +P LIL+
Sbjct: 262 YTTLIILQEDSKKPAGLDIVHLPKGPMFHFSISNWVEGKKIPGH---GKPTEHWPELILN 318
Query: 193 NFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIY 237
NF++ LG TA++ + LFP P + ++++T NQ DYI R H Y
Sbjct: 319 NFRTPLGLLTAHLFRTLFPPQPDIEGRQVVTLHNQRDYIFVRRHRY 364
Score = 60 (26.2 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 248 LKEIGPRFELRLYQIKLGTVDQSEAQIEW 276
L+E+GPRF L+L ++ G S + EW
Sbjct: 394 LQELGPRFTLKLRRVDKGIQRASGQEWEW 422
Score = 42 (19.8 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 21 KERLLYEKKRKIKEALQEGKPIPTELRNEEA 51
K +LL+ K+++ K+A + + T + EEA
Sbjct: 25 KRQLLHIKRKRAKDAARRAQRFST--KKEEA 53
>DICTYBASE|DDB_G0287937 [details] [associations]
symbol:bxdc2 "brix domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0042134 "rRNA primary
transcript binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IEA;ISS] [GO:0000027 "ribosomal large subunit assembly"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004154
dictyBase:DDB_G0287937 GO:GO:0005730 GenomeReviews:CM000154_GR
eggNOG:COG5154 KO:K14820 InterPro:IPR007109 InterPro:IPR026532
PANTHER:PTHR13634 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 OMA:SEVGPRY EMBL:AAFI02000105 RefSeq:XP_636982.1
STRING:Q54JN0 EnsemblProtists:DDB0238376 GeneID:8626376
KEGG:ddi:DDB_G0287937 ProtClustDB:CLSZ2846657 GO:GO:0042134
GO:GO:0000027 Uniprot:Q54JN0
Length = 326
Score = 147 (56.8 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 57/237 (24%), Positives = 106/237 (44%)
Query: 37 QEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAP 96
QEG E+ EE+ +E ++E+EN I + D T++ ++L T++R +
Sbjct: 34 QEGSEEEEEIVEEESEEEEE-EVEEENKNIEENKKDQSIY--TKK--RVLFTSTRGIGSK 88
Query: 97 LTQFVKELKFVFPNAQRMNR--GGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHL 154
+ +L + P++++ ++ + +S I ETC +L +G L +
Sbjct: 89 YRHLMADLISLIPHSKKEDKIDDRKTLSLINETCEMKSCNYAILFDVRKGTDCFLWMAKT 148
Query: 155 PFGPTAYFGLLNVVTRHDIKDRKSIGT-MPEAYPHLILD-NFKSKLG-ERTANILKHLFP 211
P GPT F + NV H + + + G + + P L D +F S++ + ++ ++
Sbjct: 149 PLGPTVKFHITNV---HTLDELQMTGNCLKGSRPFLHFDKSFDSEVHLQLIKELITQIYS 205
Query: 212 VPKADTK------RIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQI 262
PK K + +F Q I FR++ Q K L EIGPR + + +I
Sbjct: 206 TPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQISDQEFKKDSLLTEIGPRMIMHIDKI 262
>UNIPROTKB|Q8TDN6 [details] [associations]
symbol:BRIX1 "Ribosome biogenesis protein BRX1 homolog"
species:9606 "Homo sapiens" [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004154 GO:GO:0005730 GO:GO:0042254
CTD:55299 eggNOG:COG5154 HOGENOM:HOG000212937 HOVERGEN:HBG039185
KO:K14820 OMA:PNMHRRV OrthoDB:EOG4STS4T InterPro:IPR007109
InterPro:IPR026532 PANTHER:PTHR13634 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AF347667 EMBL:AY364244
EMBL:AK289610 EMBL:CH471119 EMBL:BC001546 EMBL:BC036741
IPI:IPI00181728 RefSeq:NP_060791.3 UniGene:Hs.718510
ProteinModelPortal:Q8TDN6 IntAct:Q8TDN6 MINT:MINT-1373627
STRING:Q8TDN6 PhosphoSite:Q8TDN6 DMDM:30580352 PaxDb:Q8TDN6
PeptideAtlas:Q8TDN6 PRIDE:Q8TDN6 DNASU:55299
Ensembl:ENST00000336767 GeneID:55299 KEGG:hsa:55299 UCSC:uc003jja.3
GeneCards:GC05P034953 HGNC:HGNC:24170 HPA:HPA039614
neXtProt:NX_Q8TDN6 PharmGKB:PA165660166 InParanoid:Q8TDN6
PhylomeDB:Q8TDN6 ChiTaRS:BRIX1 GenomeRNAi:55299 NextBio:59516
ArrayExpress:Q8TDN6 Bgee:Q8TDN6 CleanEx:HS_BXDC2
Genevestigator:Q8TDN6 GermOnline:ENSG00000113460 Uniprot:Q8TDN6
Length = 353
Score = 114 (45.2 bits), Expect = 0.00050, P = 0.00050
Identities = 64/257 (24%), Positives = 112/257 (43%)
Query: 27 EKKRKIKEALQEGKPIPTELRNEEAALR----QEIDLEDENTAIPRSHIDDEYANATERD 82
++KR+ A+Q KP E+ E A R +E++ E+E IP ++ N ER
Sbjct: 5 KRKRRGGFAVQAKKPKRNEIDAEPPAKRHATAEEVE-EEERDRIPGPVCKGKWKNK-ER- 61
Query: 83 PKILLTTSRDPSAPLTQFVKELKFVFPNAQ---RMNRGGQVISEIIETCRAHEFTDVVLV 139
IL+ +SR + +++L+ + P+++ +M+R ++ I E C +
Sbjct: 62 --ILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNCNKCIYF 118
Query: 140 HEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGT-MPEAYPHLILDNFKSKL 198
+ + + + P GP+A F + N+ H + + K G + + P L D +L
Sbjct: 119 EAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFDPAFDEL 175
Query: 199 GERTA--NILKHLFPVPKADTK------RIITFANQSDYISFRH-HIYEKQGGPKSLELK 249
+L +F P+ K + TF + I FR+ I E+ L
Sbjct: 176 PHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAA-----LV 230
Query: 250 EIGPRFELRLYQIKLGT 266
EIGPRF L L +I G+
Sbjct: 231 EIGPRFVLNLIKIFQGS 247
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 293 293 0.00091 115 3 11 22 0.38 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 602 (64 KB)
Total size of DFA: 197 KB (2112 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.63u 0.10s 27.73t Elapsed: 00:00:05
Total cpu time: 27.64u 0.10s 27.74t Elapsed: 00:00:05
Start: Fri May 10 14:49:52 2013 End: Fri May 10 14:49:57 2013