BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022723
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5PQR5|IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus
norvegicus GN=Imp4 PE=2 SV=1
Length = 291
Score = 326 bits (835), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 157/281 (55%), Positives = 205/281 (72%), Gaps = 5/281 (1%)
Query: 12 YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
YLYRK+ E +R + EKK ++K AL+E + IPTELR E AL+ ++ +D SH+
Sbjct: 12 YLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHV 71
Query: 72 DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+
Sbjct: 72 DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131
Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLIT 188
Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH-RNVELTEV 247
Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q8VHZ7|IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus
GN=Imp4 PE=2 SV=1
Length = 291
Score = 326 bits (835), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 157/281 (55%), Positives = 205/281 (72%), Gaps = 5/281 (1%)
Query: 12 YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
YLYRK+ E +R + EKK ++K AL+E + IPTELR E AL+ ++ +D SH+
Sbjct: 12 YLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHV 71
Query: 72 DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+
Sbjct: 72 DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131
Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLIT 188
Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH-RNVELTEV 247
Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus
GN=IMP4 PE=2 SV=1
Length = 291
Score = 323 bits (828), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 155/281 (55%), Positives = 204/281 (72%), Gaps = 5/281 (1%)
Query: 12 YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
YLYRK+ E ER E+K K++ AL+E + IPTELR E AL+ ++ +D +H+
Sbjct: 12 YLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTNHV 71
Query: 72 DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+
Sbjct: 72 DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131
Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GT EA PHLI+
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTASEAKPHLIM 188
Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
F S+LG+R ++IL++LFPVPK D++R+ITFANQ DYISFRHH+Y+K +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKTNH-RNVELTEV 247
Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
GPRFEL+LY I+LGT++Q + A +EW PY NT+ KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288
>sp|Q5R947|IMP4_PONAB U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii
GN=IMP4 PE=2 SV=2
Length = 291
Score = 323 bits (827), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/281 (55%), Positives = 204/281 (72%), Gaps = 5/281 (1%)
Query: 12 YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
YLYRK+ E +R E+K +++ AL+E + IPTELR E AL+ ++ +D SH+
Sbjct: 12 YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHV 71
Query: 72 DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+
Sbjct: 72 DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131
Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLIT 188
Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH-RNVELTEV 247
Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q96G21|IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens
GN=IMP4 PE=1 SV=1
Length = 291
Score = 323 bits (827), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/281 (55%), Positives = 204/281 (72%), Gaps = 5/281 (1%)
Query: 12 YLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHI 71
YLYRK+ E +R E+K +++ AL+E + IPTELR E AL+ ++ +D SH+
Sbjct: 12 YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHV 71
Query: 72 DDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAH 131
DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+
Sbjct: 72 DDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKAN 131
Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLIL 191
TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI
Sbjct: 132 GVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLIT 188
Query: 192 DNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEI 251
F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+
Sbjct: 189 HGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDH-RNVELTEV 247
Query: 252 GPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 291
GPRFEL+LY I+LGT++Q + A +EW PY NT++KR FL
Sbjct: 248 GPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans
GN=ZK795.3 PE=4 SV=1
Length = 292
Score = 308 bits (789), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/293 (51%), Positives = 203/293 (69%), Gaps = 10/293 (3%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
M+RR RLRRE+++RKSLE K++ L EK+ KI+ AL+ I LR + L + D
Sbjct: 1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDWG 60
Query: 61 DENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV 120
+ + D EY A +DPKI++TTSRDPS+ L F KE+K +FPNAQR+NRG
Sbjct: 61 GQ-----QYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYD 115
Query: 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
+ ++++ +A + TD+++ E RG PDG+++CHLPFGPTA+F + NVV RHDI + G
Sbjct: 116 VKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPN---CG 172
Query: 181 TMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240
TM E YPHLI DN SKLG R ILKHLFPVPK D+KRIITF+N DYISFRHH+Y+ +
Sbjct: 173 TMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTE 232
Query: 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFLG 292
+ +EL E GPRFEL+ YQIKLGT++ + A+ EWV+R Y NT++KR FL
Sbjct: 233 NDGE-VELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFLS 284
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp4 PE=3 SV=1
Length = 289
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 142/285 (49%), Positives = 202/285 (70%), Gaps = 10/285 (3%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRR +R RR+++Y+++ E +E L EK+R +++AL+ K + +L+ E++ L+++
Sbjct: 1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQ-EDSQLQKDYKY- 58
Query: 61 DENTAI---PRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 117
DE+ A +++DDEY ER+PK+L+TTSR+PS+ L QF KE++ + PN+ R+NRG
Sbjct: 59 DESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRG 118
Query: 118 GQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRK 177
V+ ++E RA++ TD+V++HEHRG+PDGL+I HLP+GPT F L NVV RHDI +
Sbjct: 119 NIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPN-- 176
Query: 178 SIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHI 236
GTM EAYPHLI +N SKLG+R L LFP PK T R++TFAN DYISFRHHI
Sbjct: 177 -TGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHI 235
Query: 237 YEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY 281
Y K GPK + L E GPRFE++L++I LGTVD +A +EW ++PY
Sbjct: 236 YAKT-GPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPY 279
>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1
Length = 283
Score = 283 bits (724), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 200/293 (68%), Gaps = 12/293 (4%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
M+RR R RREYLYRKSL+ +E +K++++K AL GKP+P ++ ++E LR+ I
Sbjct: 1 MIRRQARERREYLYRKSLQLQEATKIQKRQQLKAALASGKPLPKDVADDEE-LRKTIAY- 58
Query: 61 DENTAIPRSHIDDEY-ANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQ 119
DE+ + IDDEY A + DPK+++TTSRDPS L+QF KE+K +FP + R+NRGG
Sbjct: 59 DESV---QDEIDDEYSAMSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNRGGT 115
Query: 120 VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSI 179
V+ ++ C+ +D++++HEHRGVP + + H P GPTAYF L NVV RHD+ D
Sbjct: 116 VLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPD---T 172
Query: 180 GTMPEAYPHLILDNFKSKLGERTANILKHLFPVP-KADTKRIITFANQSDYISFRHHIYE 238
G M E +PHLI DNF + LG+R ILKHLFP K D+ R+ITFAN+ D+IS R H+Y
Sbjct: 173 GNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQHVYV 232
Query: 239 KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
K + +EL E+GPRFE+RLY ++LGT++ +A +EW + +M T+ K+ +L
Sbjct: 233 KTR--EGVELAEVGPRFEMRLYDLRLGTLENKDADVEWRMHGFMRTANKKDYL 283
>sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1
SV=1
Length = 290
Score = 277 bits (709), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 140/296 (47%), Positives = 200/296 (67%), Gaps = 11/296 (3%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAA---LRQEI 57
MLRR R RREYLYRK+ E ++ L +K++ IK+AL +GKP+P EL +E+ R +
Sbjct: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60
Query: 58 DLEDENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNR 116
L++ A +DDEYA + DP+I++TTSRDPS L+QF KE+K +FPNA R+NR
Sbjct: 61 SLKESEEA-DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119
Query: 117 GGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDR 176
G V+ +++ C+ TD+V++HEHRGVP L I H P GPTA F L NVV RHDI +
Sbjct: 120 GNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIIN- 178
Query: 177 KSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHH 235
G E PHLI DNF + LG+R ILKHLF PK D++R+ITFAN+ D+IS R H
Sbjct: 179 --AGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236
Query: 236 IYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
+Y + + +E+ E+GPRFE+RL++++LGT++ +A +EW +R ++ T+ K+ +L
Sbjct: 237 VYVRTR--EGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>sp|Q6BYD9|IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=IMP4 PE=3 SV=2
Length = 284
Score = 274 bits (700), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 134/294 (45%), Positives = 199/294 (67%), Gaps = 12/294 (4%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
M+R+ R RREYLYRKSLE +E L EK++++K AL GKP+ EL ++ + I E
Sbjct: 1 MIRKQARERREYLYRKSLELQESSLTEKRQQLKAALASGKPLSKELAEDKELQKDFIYDE 60
Query: 61 DENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQ 119
E T IDDEY+ + +PK+L+TTSR+PS L QF KE+K +FPN+ ++NRG
Sbjct: 61 SEQT-----EIDDEYSALSGISEPKVLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRGNY 115
Query: 120 VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSI 179
VI++++ TC+ + +D++++HEHRG+P L I H P GP+ F L NV RHD+ + I
Sbjct: 116 VITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDLPE---I 172
Query: 180 GTMPEAYPHLILDNFKSKLGERTANILKHLFPVP-KADTKRIITFANQSDYISFRHHIYE 238
G E+YPHL+ +NF S+LG+R I+KHLFP K D+ R+ITF N D+IS RHH+Y
Sbjct: 173 GNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHHMYV 232
Query: 239 KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLG 292
K ++EL E+GPRFE+RLY+++LG +D ++++EW +R ++ T ++ +LG
Sbjct: 233 KTKD--TVELSEVGPRFEMRLYELRLGLLDNKDSEVEWQLRRFIRTGNRKNYLG 284
>sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1
Length = 288
Score = 270 bits (691), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 137/299 (45%), Positives = 201/299 (67%), Gaps = 19/299 (6%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALR------ 54
MLRR R RREYLYRK+ E +E L +K++ IK+AL +GKP+P EL +E +
Sbjct: 1 MLRRQARERREYLYRKAQELQETQLQQKRQIIKQALAQGKPLPKELAEDEQLQKDFRYDQ 60
Query: 55 QEIDLEDENTAIPRSHIDDEY-ANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQR 113
D EDE + +DDEY A++ + ++++TTSRDPS+ L QF KE+K +FPNA R
Sbjct: 61 SMADNEDE------AGVDDEYSASSGIVEARVIVTTSRDPSSRLAQFAKEIKLLFPNAVR 114
Query: 114 MNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDI 173
+NRG V+++++ C+ TD++++HEHRGVP L + H P+GPTA+F L NVV RHDI
Sbjct: 115 LNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDI 174
Query: 174 KDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLF-PVPKADTKRIITFANQSDYISF 232
+R G E PHLI DNF + LG R ILK+LF P PK D+ R+ITFAN+ D+IS
Sbjct: 175 LNR---GNQSEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISV 231
Query: 233 RHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
R H+Y + +E+ E+GPRFE+RL++++LGT++ +A +EW +R ++ T+ ++ +L
Sbjct: 232 RQHVYVRT--KDGVEMAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFVRTANRKDYL 288
>sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=IMP4 PE=3 SV=2
Length = 283
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 196/293 (66%), Gaps = 12/293 (4%)
Query: 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLE 60
MLRR R RREYLYRK+ E +E L +K+ IK+AL +GKP+P E+ ++ R D +
Sbjct: 1 MLRRQARERREYLYRKAQELQESQLQQKRDLIKQALAQGKPLPKEVADDTKLQR---DYQ 57
Query: 61 DENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQ 119
+ +A + IDDEY+ + DPK+++TTSRDPS L+QF KE+K +FP + R+NRG
Sbjct: 58 YDESA--QESIDDEYSALSGIVDPKVIVTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNY 115
Query: 120 VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSI 179
++ +++ C+ TD+V++HEHRGVP L I H P GPTA F L NVV RHDI +
Sbjct: 116 IMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVVLRHDILN---A 172
Query: 180 GTMPEAYPHLILDNFKSKLGERTANILKHLFPVP-KADTKRIITFANQSDYISFRHHIYE 238
G E +PHLI DNF + LG+R ILKH+FP K D+ R+ITFAN+ D+IS R H+Y
Sbjct: 173 GNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKKDSPRVITFANRGDFISVRQHVYV 232
Query: 239 KQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291
K +EL E+GPRFE++LY++ LGT++ +A +EW +R ++ T+ ++ +L
Sbjct: 233 KTR--DGVELAEVGPRFEMKLYELTLGTLENKDADVEWQLRRFVRTANRKDYL 283
>sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans
GN=F44G4.1 PE=4 SV=4
Length = 384
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 139/227 (61%), Gaps = 13/227 (5%)
Query: 72 DDEYANATERD--PKILLTTSRDPSAPLT--QFVKELKFVFPNAQRMNRGGQVISEIIET 127
+DE+A R+ PK+++T + P A +T +F EL+ PN++ R ++ IIE
Sbjct: 164 NDEFAPYFNRETSPKVMITMT--PKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQ 221
Query: 128 CRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYP 187
+ EFTD+++VHE R P+G+I CHLP GPTAYF + ++ D+ K G +P
Sbjct: 222 AKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDL---KKFGESTSHFP 278
Query: 188 HLILDNFKSKLGERTANILKHLFP-VPKADTKRIITFANQSDYISFRHHIYE-KQGGPKS 245
+IL+NF ++LG A +L LFP PK +R++TF NQ DYI FRHH YE K+ G K+
Sbjct: 279 EVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKA 338
Query: 246 LELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY-MNTSKKRKFL 291
L E+GPRF LRL ++ GT D + EWV++ + M TS++R FL
Sbjct: 339 A-LLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384
>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2
Length = 349
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 141/254 (55%), Gaps = 8/254 (3%)
Query: 40 KPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATER--DPKILLTTSRDPSAPL 97
KP+P + N+ +D DE A + DE+A+ R PKIL+TTS P
Sbjct: 99 KPVPKTIDNQRVYDETTVDPNDEEVAYDEA--TDEFASYFNRQTSPKILITTSDRPHGRT 156
Query: 98 TQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG 157
+ ++L V P++ R G + +II C A +FTD+++++E R P+GLI+ HLP G
Sbjct: 157 VRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNG 216
Query: 158 PTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKAD 216
PTA+F + +V R +IK R T E P +IL+NF ++LG + LFP P+
Sbjct: 217 PTAHFKMSSVRLRKEIKRRGKDPT--EHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFI 274
Query: 217 TKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEW 276
+++ TF NQ DYI FR H Y + K + ++E+GPRF L+L ++ GT D + EW
Sbjct: 275 GRQVATFHNQRDYIFFRFHRYIFK-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEW 333
Query: 277 VIRPYMNTSKKRKF 290
V +P + +RKF
Sbjct: 334 VHKPREMDTSRRKF 347
>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1
Length = 349
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 141/254 (55%), Gaps = 8/254 (3%)
Query: 40 KPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYAN--ATERDPKILLTTSRDPSAPL 97
KP+P + N+ +D DE A + DE+A+ + PKIL+TTS P
Sbjct: 99 KPVPKTIDNQRVYDETTVDPNDEEVAYDEA--TDEFASYFNKQTSPKILITTSDRPHGRT 156
Query: 98 TQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG 157
+ ++L V PN+ R G + +II C A +FTD+++++E R P+GLI+ HLP G
Sbjct: 157 VRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNG 216
Query: 158 PTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKAD 216
PTA+F + +V R +IK R T E P +IL+NF ++LG + LFP P+
Sbjct: 217 PTAHFKMSSVRLRKEIKRRGKDPT--EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFI 274
Query: 217 TKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEW 276
+++ TF NQ DYI FR H Y + K + ++E+GPRF L+L ++ GT D + EW
Sbjct: 275 GRQVATFHNQRDYIFFRFHRYIFRSE-KKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEW 333
Query: 277 VIRPYMNTSKKRKF 290
V +P + +RKF
Sbjct: 334 VHKPREMDTSRRKF 347
>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2
Length = 349
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 141/254 (55%), Gaps = 8/254 (3%)
Query: 40 KPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYAN--ATERDPKILLTTSRDPSAPL 97
KP+P + N+ +D DE A + DE+A+ + PKIL+TTS P
Sbjct: 99 KPVPKTIDNQRVYDETTVDPNDEEVAYDEA--TDEFASYFNKQTSPKILITTSDRPHGRT 156
Query: 98 TQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG 157
+ ++L V PN+ R G + +II C A +FTD+++++E R P+GLI+ HLP G
Sbjct: 157 VRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNG 216
Query: 158 PTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKAD 216
PTA+F + +V R +IK R T E P +IL+NF ++LG + LFP P+
Sbjct: 217 PTAHFKMSSVRLRKEIKRRGKDPT--EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFI 274
Query: 217 TKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEW 276
+++ TF NQ DYI FR H Y + K + ++E+GPRF L+L ++ GT D + EW
Sbjct: 275 GRQVATFHNQRDYIFFRFHRYIFR-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEW 333
Query: 277 VIRPYMNTSKKRKF 290
V +P + +RKF
Sbjct: 334 VHKPREMDTSRRKF 347
>sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1
Length = 343
Score = 157 bits (398), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 144/255 (56%), Gaps = 10/255 (3%)
Query: 40 KPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERD--PKILLTTSRDPSAPL 97
KP+P + N+ +D DE A+ DE+A + PKIL+TTS P
Sbjct: 93 KPVPKTIENQRVYDETTVDPADEEVAL--DEATDEFAPYFNKQTTPKILITTSDRPRGRS 150
Query: 98 TQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG 157
+F ++L + PN+ R G + +II C + ++TD+++++E R VP+GL++CHLP G
Sbjct: 151 VRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDG 210
Query: 158 PTAYFGLLNVVTRHDIKDRKSIGTMP-EAYPHLILDNFKSKLGERTANILKHLFP-VPKA 215
PTA+F + NV R ++K + G P E P +IL+NF ++LG + L+P P
Sbjct: 211 PTAHFKISNVRLRKEMKRK---GKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHF 267
Query: 216 DTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIE 275
+++ TF NQ DYI FR+H Y + K + ++E+GPRF L+L ++ GT D + E
Sbjct: 268 VGRQVATFHNQRDYIFFRYHRYLFK-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYE 326
Query: 276 WVIRPYMNTSKKRKF 290
WV + + + +RKF
Sbjct: 327 WVHKRHEMDTSRRKF 341
>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2
Length = 345
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 137/250 (54%), Gaps = 8/250 (3%)
Query: 40 KPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATER--DPKILLTTSRDPSAPL 97
KP+P + N+ +D DE A + DE+A+ R PKIL+TTS P
Sbjct: 99 KPVPKTIDNQRVYDETTVDPNDEEVAYDEA--TDEFASYFNRQTSPKILITTSDRPHGRT 156
Query: 98 TQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG 157
+ ++L V P++ R G + +II C A +FTD+++++E R P+GLI+ HLP G
Sbjct: 157 VRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNG 216
Query: 158 PTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKAD 216
PTA+F + +V R +IK R T E P +IL+NF ++LG + LFP P+
Sbjct: 217 PTAHFKMSSVRLRKEIKRRGKDPT--EHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFI 274
Query: 217 TKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEW 276
+++ TF NQ DYI FR H Y + K + ++E+GPRF L+L ++ GT D + EW
Sbjct: 275 GRQVATFHNQRDYIFFRFHRYIFK-SEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEW 333
Query: 277 VIRPYMNTSK 286
V + SK
Sbjct: 334 VHKVCAYCSK 343
>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster
GN=CG6712 PE=2 SV=1
Length = 394
Score = 150 bits (379), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 140/248 (56%), Gaps = 20/248 (8%)
Query: 48 NEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFV 107
NEE L++E+ L+D ++ RS+ +PK+L+T + +P +F EL +
Sbjct: 163 NEE--LQKELQLDDFSSYFERSY-----------EPKVLITFADNPVTKTRKFGLELSRI 209
Query: 108 FPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNV 167
FPNA R + +I ++ EFTDVV+V+E R P+GL++ HLP GPTA+F L NV
Sbjct: 210 FPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNV 269
Query: 168 VTRHDIK-DRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLF-PVPKADTKRIITFAN 225
DIK D K I + P +IL+NF ++LG +L LF P+ +R +TF N
Sbjct: 270 KLTSDIKRDHKEIT---KHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHN 326
Query: 226 QSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVI--RPYMN 283
Q DYI FRHH YE K ++L+E+GPRF L+L ++ GT D W+I + +
Sbjct: 327 QRDYIFFRHHRYEFTKEGKRVKLRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAM 386
Query: 284 TSKKRKFL 291
S++R FL
Sbjct: 387 ESRRRFFL 394
>sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1
Length = 330
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 140/254 (55%), Gaps = 8/254 (3%)
Query: 40 KPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATER--DPKILLTTSRDPSAPL 97
K +P + N+ ++ EDE A DE++ R +PK+L+TTS P
Sbjct: 80 KEVPKTIENQRIYDETTVNPEDEEVAFDEG--TDEFSAYFNRLTNPKVLITTSDRPRGRT 137
Query: 98 TQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG 157
+F +L V P+A R G + ++I C + FT +++++E R VP+G+++CHLP G
Sbjct: 138 VRFCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDG 197
Query: 158 PTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFP-VPKAD 216
PTA+F + +V R ++K R T E P +IL+NF ++LG + LFP P+
Sbjct: 198 PTAHFKVSSVRLRKEMKRRGKNPT--EHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFV 255
Query: 217 TKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEW 276
+++ TF NQ D+I FR H Y + K + ++E+GPRF L+L ++ GT D + EW
Sbjct: 256 GRQVATFHNQRDFIFFRFHRYIFK-NEKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEW 314
Query: 277 VIRPYMNTSKKRKF 290
V + + S +RKF
Sbjct: 315 VHKRHEMDSSRRKF 328
>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1
Length = 306
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 119/214 (55%), Gaps = 15/214 (7%)
Query: 72 DDEYAN--ATERD-PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQV-ISEIIET 127
DDE++ + ER PK+L+TTS+ S F EL FPNA+ R G + + EI E
Sbjct: 80 DDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEA 139
Query: 128 CRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDR-KSIGTMPEAY 186
+TD+++++E R + L + HLP GP+ YF L N+ T +I + +S G +PE
Sbjct: 140 AAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPE-- 197
Query: 187 PHLILDNFKSKLGERTANILKHLF-PVPKADTKRIITFANQSDYISFRHHIY---EKQGG 242
LI++NF ++LG A + LF P+ ++++T Q D++ FR H Y EK
Sbjct: 198 --LIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFREKSNM 255
Query: 243 PKSL--ELKEIGPRFELRLYQIKLGTVDQSEAQI 274
P + L+E+GPRF +RL ++ G D+ E ++
Sbjct: 256 PDGIGTGLQELGPRFTMRLRMVQKGVWDRKEGEV 289
>sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1
Length = 295
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 23/260 (8%)
Query: 45 ELRNEEAALRQEIDLEDENTAIPRSHIDDE----------YANATERDP-KILLTTSRDP 93
ELR E L++ + ENT + I+ E Y N+ +P KI LTT+ +
Sbjct: 46 ELR--EQRLKENVTQTIENTRVYDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNA 103
Query: 94 SAPLTQFVKELKFVFPNAQRMNRG-GQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIIC 152
+F L + PN + R G + EI + C FTD+V+++E + GL
Sbjct: 104 KKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFI 163
Query: 153 HLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV 212
HLP GPT YF L + V ++K G P LIL+NF+++LG+ + + + P
Sbjct: 164 HLPEGPTFYFKLSSFV---EVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQ 220
Query: 213 -PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSE 271
P + +++IT NQ DYI FR H Y + + + L+E+GP+F L+L +++ G +++
Sbjct: 221 NPDIEGRQVITLHNQRDYIFFRRHRYVFKDNER-VGLQELGPQFTLKLKRLQRGIKEET- 278
Query: 272 AQIEWVIRPYMNTSKKRKFL 291
EW +P M+ KK+ +L
Sbjct: 279 ---EWEHKPEMDKEKKKFYL 295
>sp|Q54JN0|BRX1_DICDI Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium
discoideum GN=bxdc2 PE=3 SV=1
Length = 326
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Query: 84 KILLTTSRDPSAPLTQFVKELKFVFPNAQRMNR--GGQVISEIIETCRAHEFTDVVLVHE 141
++L T++R + + +L + P++++ ++ + +S I ETC +L
Sbjct: 76 RVLFTSTRGIGSKYRHLMADLISLIPHSKKEDKIDDRKTLSLINETCEMKSCNYAILFDV 135
Query: 142 HRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG-TMPEAYPHLILD-NFKSKLG 199
+G L + P GPT F + NV H + + + G + + P L D +F S++
Sbjct: 136 RKGTDCFLWMAKTPLGPTVKFHITNV---HTLDELQMTGNCLKGSRPFLHFDKSFDSEVH 192
Query: 200 -ERTANILKHLFPVPKADTK------RIITFANQSDYISFRHHIYEKQGGPKSLELKEIG 252
+ ++ ++ PK K + +F Q I FR++ Q K L EIG
Sbjct: 193 LQLIKELITQIYSTPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQISDQEFKKDSLLTEIG 252
Query: 253 PRFELRLYQI 262
PR + + +I
Sbjct: 253 PRMIMHIDKI 262
>sp|Q975H1|BRIX_SULTO Probable brix domain-containing ribosomal biogenesis protein
OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 /
NBRC 100140 / 7) GN=STK_04410 PE=3 SV=2
Length = 176
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRG 144
I+ T+SRD + F+ EL +VFPN+ ++NRG Q + +II +V++ +G
Sbjct: 8 IVFTSSRDAPLRVRTFLNELTYVFPNSIKINRGRQSLKDIIAKSIYLNSKYLVIIDVIKG 67
Query: 145 VP 146
P
Sbjct: 68 NP 69
>sp|Q3SZZ0|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1
PE=2 SV=1
Length = 353
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 34/251 (13%)
Query: 30 RKIKEALQEGK-PIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLT 88
+K+K ++GK P +EEAA E+E IP ++ N +IL+
Sbjct: 17 KKLKRDAKDGKLPAKANDVSEEAA-------EEEKDRIPGPVCKGKWKNKE----RILIF 65
Query: 89 TSRDPSAPLTQFVKELKFVFPNAQ---RMNRGGQVISEIIETCRAHEFTDVVLVHEHRGV 145
+SR + +++L+ + P+++ +M+R ++ I E C + +
Sbjct: 66 SSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNCNKCIYFEAKKKQ 124
Query: 146 PDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG-TMPEAYPHLILDNFKSKLGERT-- 202
+ + + P GP+A F + N+ H + + K G + + P L D +L
Sbjct: 125 DLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALL 181
Query: 203 ANILKHLFPVPKADTK------RIITFANQSDYISFRH-HIYEKQGGPKSLELKEIGPRF 255
+L +F P+ K + TF + I FR+ I E+ L EIGPRF
Sbjct: 182 KELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAA-----LVEIGPRF 236
Query: 256 ELRLYQIKLGT 266
L L +I G+
Sbjct: 237 VLNLIKIFQGS 247
>sp|Q9YC08|BRIX_AERPE Probable brix domain-containing ribosomal biogenesis protein
OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 /
JCM 9820 / NBRC 100138 / K1) GN=APE_1443.1 PE=1 SV=2
Length = 180
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 87 LTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVP 146
+TTSR PS + FVK+L P A R RG + E+ +V+V E RG P
Sbjct: 1 MTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP 60
Query: 147 DGLIICHLPFGP 158
G+I + GP
Sbjct: 61 -GIIRVYAVEGP 71
>sp|Q9V200|BRIX_PYRAB Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB02740
PE=3 SV=1
Length = 224
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRG 144
+L+TTS P+ F +L+ VFPN+ M RG + I E++ + +++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 145 VPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
P + + Y G L + H +K ++ +G
Sbjct: 62 NPLKMTFIKVHPDDWGYLGYLYL---HGVKLQREMG 94
>sp|Q8TDN6|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1
PE=1 SV=2
Length = 353
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 29/256 (11%)
Query: 27 EKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTA---IPRSHIDDEYANATERDP 83
++KR+ A+Q KP E+ E A R E E IP ++ N
Sbjct: 5 KRKRRGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKE---- 60
Query: 84 KILLTTSRDPSAPLTQFVKELKFVFPNAQ---RMNRGGQVISEIIETCRAHEFTDVVLVH 140
+IL+ +SR + +++L+ + P+++ +M+R ++ I E C +
Sbjct: 61 RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNCNKCIYFE 119
Query: 141 EHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG-TMPEAYPHLILDNFKSKLG 199
+ + + + P GP+A F + N+ H + + K G + + P L D +L
Sbjct: 120 AKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFDPAFDELP 176
Query: 200 ERT--ANILKHLFPVPKADTK------RIITFANQSDYISFRH-HIYEKQGGPKSLELKE 250
+L +F P+ K + TF + I FR+ I E+ L E
Sbjct: 177 HYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAA-----LVE 231
Query: 251 IGPRFELRLYQIKLGT 266
IGPRF L L +I G+
Sbjct: 232 IGPRFVLNLIKIFQGS 247
>sp|Q8TZI2|BRIX_PYRFU Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=PF2010 PE=3 SV=1
Length = 223
Score = 38.5 bits (88), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRG 144
+L+TTS P+ F +L+ VFPN+ + RG + I E++ + +++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQELLMEAYDRGYERLLILNVWKG 61
Query: 145 VPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
P L + + P + G L + H IK ++ +G
Sbjct: 62 NP--LKMTFIKVHPEDW-GYLGYLYLHGIKLQREMG 94
>sp|Q8ZVN2|BRIX_PYRAE Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM
7523 / JCM 9630 / NBRC 100827) GN=PAE2201 PE=3 SV=1
Length = 181
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 80 ERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLV 139
E K+++TTSR+PS + V +L P ++ RG + ++E A + +
Sbjct: 2 EGGCKVIITTSREPSKKTLELVNDLVNSLPGTSKIVRGKKSFITLLEEAVACGARYIAFI 61
Query: 140 HEHRGVPDGLI 150
E RG+P L+
Sbjct: 62 WERRGMPFALL 72
>sp|Q4QQT6|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus
GN=Brix1 PE=2 SV=1
Length = 352
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 30/255 (11%)
Query: 29 KRKIKEALQEGKPIPTELRNEEAALRQEIDL----EDENTAIPRSHIDDEYANATERDPK 84
KRK + L+ P + R + ++ D+ E+E IP ++ N +
Sbjct: 5 KRKRRGDLEVQAKKPKKNRKDAGQPAKQADVAKEAEEEKDRIPGPVCKGKWKNKE----R 60
Query: 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQ---RMNRGGQVISEIIETCRAHEFTDVVLVHE 141
IL+ +SR + +++L+ + P+++ +M+R ++ I E C +
Sbjct: 61 ILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNCNKCIYFEA 119
Query: 142 HRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG-TMPEAYPHLILDNFKSKLGE 200
+ + + + P GP+A F + N+ H + + K G + + P L D L
Sbjct: 120 KKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFDPAFDDLPH 176
Query: 201 RT--ANILKHLFPVPKADTK------RIITFANQSDYISFRH-HIYEKQGGPKSLELKEI 251
L +F P+ K + TF + I FR+ I E+ L EI
Sbjct: 177 YALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAA-----LVEI 231
Query: 252 GPRFELRLYQIKLGT 266
GPRF L L +I G+
Sbjct: 232 GPRFVLNLIKIFQGS 246
>sp|Q5JDM5|BRIX_PYRKO Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=TK0617 PE=3 SV=1
Length = 208
Score = 38.1 bits (87), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRG 144
+L+TTS P+ F +L+ VFPN+ + RG + I +++ + +++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLEKVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKG 61
Query: 145 VPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
P + + Y G L + H IK ++ IG
Sbjct: 62 NPLKMTFIKVDPEDWGYIGYLYL---HGIKLQREIG 94
>sp|Q9DCA5|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1
PE=2 SV=3
Length = 353
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 108/265 (40%), Gaps = 36/265 (13%)
Query: 15 RKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDE 74
RK G E + KR K+A Q K +A + +E + E+ + IP +
Sbjct: 6 RKRRGGLEVQAKKPKRSSKDAGQPAK---------QADVAKEAEEENRDR-IPGPVCKGK 55
Query: 75 YANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQ---RMNRGGQVISEIIETCRAH 131
+ N +IL+ +SR + +++L+ + P+++ +M+R ++ I E C
Sbjct: 56 WKNKE----RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMK 110
Query: 132 EFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG-TMPEAYPHLI 190
+ + + + + P GP+A F + N+ H + + K G + + P L
Sbjct: 111 NCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLS 167
Query: 191 LDNFKSKLGERT--ANILKHLFPVPKADTK------RIITFANQSDYISFRH-HIYEKQG 241
D L L +F P+ K + TF + I FR+ I E+
Sbjct: 168 FDPAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDA 227
Query: 242 GPKSLELKEIGPRFELRLYQIKLGT 266
L EIGPRF L L +I G+
Sbjct: 228 A-----LVEIGPRFVLNLIKIFQGS 247
>sp|Q9UXB9|BRIX_SULSO Probable brix domain-containing ribosomal biogenesis protein
OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617
/ JCM 11322 / P2) GN=SSO0731 PE=3 SV=1
Length = 170
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 84 KILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHR 143
+I++T+SRDPS F+ L FV P++ ++ RG + EI E ++ V
Sbjct: 7 RIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKIEIFERAINLGALYLLFVLAKN 66
Query: 144 GVPDGLIICHLPFGPTAYF 162
G P +I+ L YF
Sbjct: 67 GNPLRIIVYDLESLSIKYF 85
>sp|Q8UVY2|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1
PE=2 SV=1
Length = 339
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 29/242 (11%)
Query: 42 IPTELRNEEAALRQEIDLEDENTA-----IPRSHIDDEYANATERDPKILLTTSRDPSAP 96
+P N + A +Q E E TA +P + ++ N ++L+ +SR +
Sbjct: 11 LPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGKWKNKE----RVLIFSSRGINFR 66
Query: 97 LTQFVKELKFVFPNAQ---RMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICH 153
+++L+ + P+++ +M+R ++ + E C + + + + +
Sbjct: 67 TRHLMQDLRSLMPHSRAETKMDRKDKLFV-VNEVCEMKNCNKCIYFEAKKKQDLYMWLSN 125
Query: 154 LPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERT--ANILKHLFP 211
P GP+A F + N+ T ++K S + + P L D + + +L +F
Sbjct: 126 SPEGPSAKFLVQNIHTLAELK--MSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFG 183
Query: 212 VPKADTKR------IITFANQSDYISFRHH-IYEKQGGPKSLELKEIGPRFELRLYQIKL 264
P+ + I TF+ + I FR++ I E+ L EIGPRF L L +I
Sbjct: 184 TPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAA-----LVEIGPRFVLNLIKIFK 238
Query: 265 GT 266
G+
Sbjct: 239 GS 240
>sp|Q6M0M3|BRIX_METMP Probable brix domain-containing ribosomal biogenesis protein
OS=Methanococcus maripaludis (strain S2 / LL) GN=MMP0247
PE=3 SV=1
Length = 164
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRG 144
+++TTSR PS V +L VF N + +NRG +SE+IE D+++V E +G
Sbjct: 1 MIITTSRKPSQRTRSLVNDLARVF-NFKILNRGKIPLSELIENK-----DDMIIVEELKG 54
Query: 145 VPDGLIICHL 154
P L I +
Sbjct: 55 NPGRLKIFNF 64
>sp|P34524|BRX1_CAEEL Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans
GN=K12H4.3 PE=3 SV=1
Length = 352
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 27/201 (13%)
Query: 84 KILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQ-----VISEIIETCRAHEFTDVVL 138
++L+ SR +K++K + P+A+ ++ Q V++EI E + V+
Sbjct: 64 RVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLNVLNEIAEMKNCTK----VM 119
Query: 139 VHEHRGVPDG-LIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAY-PHLILDNF-- 194
E R D L + ++ GP+ F + NV H +K+ K G A P L D+
Sbjct: 120 YFESRKRKDTYLWMSNVEKGPSIKFLVHNV---HTMKELKMSGNCLRASRPVLSFDDAFD 176
Query: 195 -KSKLGERTANILK-----HLFPVPKADTKRIITFA-NQSDYISFRHHIYEKQGGPKSLE 247
K +L A +++ H P + + F+ + D I FR+ Q +SL+
Sbjct: 177 KKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNF----QIVDESLQ 232
Query: 248 LKEIGPRFELRLYQIKLGTVD 268
L+E+GPRF L + ++ G+ +
Sbjct: 233 LQEVGPRFVLEMVRLFAGSFE 253
>sp|Q5RAN2|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1
PE=2 SV=1
Length = 353
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 28/199 (14%)
Query: 84 KILLTTSRDPSAPLTQFVKELKFVFPNAQ---RMNRGGQVISEIIETCRAHEFTDVVLVH 140
+IL+ +SR + +++L+ + P+++ +M+R ++ I E C +
Sbjct: 61 RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNCNKCIYFE 119
Query: 141 EHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSI--GTMP--------EAYPHLI 190
+ + + + P GP+A F + N+ T ++K + G+ P + PH
Sbjct: 120 AKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYA 179
Query: 191 LDNFKSKLGERTANILKHLFPVPKAD--TKRIITFANQSDYISFRH-HIYEKQGGPKSLE 247
L L E IL PK+ + TF + I FR+ I E+
Sbjct: 180 L------LKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAA----- 228
Query: 248 LKEIGPRFELRLYQIKLGT 266
L EIGPRF L L +I G+
Sbjct: 229 LVEIGPRFVLNLIKIFQGS 247
>sp|O74104|BRIX_PYRHO Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=PH1900 PE=3 SV=1
Length = 224
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRG 144
+L+TTS P+ F +L+ V PN+ + RG + I E++ + +++++ +G
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVIPNSLYLTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 145 VPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIG 180
P L + + P + G L + H +K ++ +G
Sbjct: 62 NP--LKMTFIKVHPEDW-GYLGYLYLHGVKLQREMG 94
>sp|B9L1H2|ATPD_THERP ATP synthase subunit delta OS=Thermomicrobium roseum (strain ATCC
27502 / DSM 5159 / P-2) GN=atpH PE=3 SV=1
Length = 180
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 91 RDPSAPLTQFVKELKFVFP-NAQRMNRGGQVISEIIETCRAHEFTDVV-----LVHEHRG 144
++P+ PL V+ + +FP + R R V+ ++E R H+ DVV L+ EHRG
Sbjct: 48 QNPAIPLEAKVQVIDRLFPGDENRYVRNLLVL--LLERGRWHQLRDVVVAFRELLREHRG 105
Query: 145 VPDGLIICHLPFGPT 159
V D ++ +P P+
Sbjct: 106 VIDVELVTAVPLEPS 120
>sp|A8GMP7|MURB_RICAH UDP-N-acetylenolpyruvoylglucosamine reductase OS=Rickettsia akari
(strain Hartford) GN=murB PE=3 SV=1
Length = 295
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 205 ILKHLFPVPKADTKRIITFANQ-SDYISFRHHIYEKQGG-----PKSLELKEIGPRFELR 258
ILK +F V K D++ I+ N+ ++ S I E+ GG P+ L+ E+ + LR
Sbjct: 178 ILKAVFKVNKGDSENILLRMNEINNTRSLTQPIKERTGGSTFANPEGLKSWELIDKAGLR 237
Query: 259 LYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
Y+I G SE ++I TSK + LGD
Sbjct: 238 GYRI--GGASMSELHCNFMINNGDATSKDLEDLGD 270
>sp|Q3UHI4|TMED8_MOUSE Protein TMED8 OS=Mus musculus GN=Tmed8 PE=1 SV=1
Length = 326
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 46 LRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELK 105
+ +AA ++ DLE N + P + D A ++ P+++ S+D + L +
Sbjct: 31 VEESQAAASEKEDLESTNVSSPLASASDPAAESSPYRPQMVSPASKDTTEDLQNVAGASE 90
Query: 106 FVFPNAQRMNRGG--QVISEIIETCRAHEFTDVVLVH-EHRGVPDGL 149
P Q G QV+SE+ + D V++ EH G D L
Sbjct: 91 GQAPGEQAALPAGQTQVLSEMAKYQAPQRPEDTVMIQSEHTGAIDVL 137
>sp|Q96FS4|SIPA1_HUMAN Signal-induced proliferation-associated protein 1 OS=Homo sapiens
GN=SIPA1 PE=1 SV=1
Length = 1042
Score = 33.1 bits (74), Expect = 2.2, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 24 LLYEKKRKIKEALQEG--KPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATER 81
LL K+ + LQ+G P P +L E L +N+ PRS + DE
Sbjct: 800 LLPTTKQLLHLCLQDGGSPPGPGDLAEERTEF-----LHSQNSLSPRSSLSDEAPVLPNT 854
Query: 82 DPKILLTTSRDPSAP 96
P +LL T+ PS P
Sbjct: 855 TPDLLLATTAKPSVP 869
>sp|Q54DJ0|RPF2_DICDI Ribosome production factor 2 homolog OS=Dictyostelium discoideum
GN=bxdc1 PE=3 SV=1
Length = 307
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 17/86 (19%)
Query: 188 HLILDNFKSKLGERTANI-LKHLFPVPKADTKRIITFANQSDYISFRHH--IYEKQGG-- 242
+L LD F+ +L E + L H+ + D D I FRH+ I+ G
Sbjct: 166 NLFLDMFRGRLVEYINLVGLDHVVIMTAVD-----------DKILFRHYTTIFSPSGSKI 214
Query: 243 PKSLELKEIGPRFELRLYQIKLGTVD 268
PK ++LKE+GP F++ + + KL + D
Sbjct: 215 PK-VDLKEVGPSFDITIRRTKLASAD 239
>sp|P52593|NU188_YEAST Nucleoporin NUP188 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP188 PE=1 SV=1
Length = 1655
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 195 KSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKS------LEL 248
K KL R I I+ F NQ D HH ++ G K+ L+
Sbjct: 1071 KYKLISRIVEIFALCIYNSTDSNSEILNFLNQEDLFELVHHFFQIDGFNKTFHDELNLKF 1130
Query: 249 KEIGPRFELRLYQ-IKLGTVDQSE 271
KE P EL+ +Q I L ++++E
Sbjct: 1131 KEKWPSLELQSFQKIPLSRINENE 1154
>sp|A6KXF7|MNMA1_BACV8 tRNA-specific 2-thiouridylase MnmA 1 OS=Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=mnmA1 PE=3
SV=1
Length = 354
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 75 YANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCR 129
YA+ E+D KI L T++DP T F+ ++ ++ + GG + +E+ + R
Sbjct: 122 YASILEKDGKIWLGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKNEVRDIAR 176
>sp|Q4UKP0|MURB_RICFE UDP-N-acetylenolpyruvoylglucosamine reductase OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=murB PE=3 SV=1
Length = 295
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 205 ILKHLFPVPKADTKRIITFANQ-SDYISFRHHIYEKQGG-----PKSLELKEIGPRFELR 258
ILK +F V K D++ I+ N+ ++ S I E+ GG P+ L+ E+ + LR
Sbjct: 178 ILKAVFKVNKGDSENILLRMNEINNARSATQPIKERTGGSTFANPEGLKSWELIDKAGLR 237
Query: 259 LYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293
Y+I G SE ++I T+K + LGD
Sbjct: 238 GYRI--GGASMSELHCNFMINNGDATAKDLEDLGD 270
>sp|A5GB52|SPEA_GEOUR Biosynthetic arginine decarboxylase OS=Geobacter uraniireducens
(strain Rf4) GN=speA PE=3 SV=1
Length = 635
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Query: 2 LRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQ 55
L N R E+LY K + RKI +++ KPIP EL+N + +LRQ
Sbjct: 415 LTLNDRAMAEWLYGKII-----------RKINSIVEKIKPIPEELQNFQLSLRQ 457
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,366,271
Number of Sequences: 539616
Number of extensions: 4989363
Number of successful extensions: 13805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 13669
Number of HSP's gapped (non-prelim): 96
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)