Query 022723
Match_columns 293
No_of_seqs 227 out of 723
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2781 U3 small nucleolar rib 100.0 4.2E-95 9E-100 645.5 28.9 289 1-293 1-289 (290)
2 KOG2780 Ribosome biogenesis pr 100.0 3.9E-73 8.5E-78 510.3 22.1 280 6-291 11-302 (302)
3 PF04427 Brix: Brix domain; I 100.0 2E-42 4.4E-47 303.3 10.3 173 87-262 1-191 (191)
4 smart00879 Brix Brix domain. T 100.0 5.7E-39 1.2E-43 277.6 19.9 172 86-257 1-180 (180)
5 COG2136 IMP4 Predicted exosome 100.0 1.9E-37 4.2E-42 272.7 18.7 181 83-268 2-190 (191)
6 KOG2963 RNA-binding protein re 100.0 8.4E-37 1.8E-41 283.7 17.5 194 81-278 24-312 (405)
7 KOG2971 RNA-binding protein re 100.0 7.4E-37 1.6E-41 273.8 13.7 200 82-290 49-259 (299)
8 COG5154 BRX1 RNA-binding prote 100.0 1E-33 2.2E-38 248.0 15.2 208 72-285 16-240 (283)
9 PRK03972 ribosomal biogenesis 100.0 5.8E-30 1.3E-34 226.9 20.9 173 85-266 2-194 (208)
10 PRK00933 ribosomal biogenesis 99.5 1.9E-13 4.1E-18 118.2 15.2 114 85-210 1-114 (165)
11 KOG3031 Protein required for b 99.5 2.5E-13 5.4E-18 124.3 9.9 171 92-265 37-229 (307)
12 COG5106 RPF2 Uncharacterized c 98.3 1.5E-06 3.3E-11 78.7 6.4 169 94-265 39-236 (316)
13 PRK03972 ribosomal biogenesis 95.8 0.081 1.8E-06 47.6 9.6 76 85-165 107-188 (208)
14 PF05508 Ran-binding: RanGTP-b 77.5 1.4 3E-05 41.9 1.8 39 249-287 187-227 (302)
15 cd00860 ThrRS_anticodon ThrRS 72.6 20 0.00042 26.5 6.8 75 84-159 3-78 (91)
16 cd00861 ProRS_anticodon_short 67.6 24 0.00051 26.4 6.4 67 96-163 19-85 (94)
17 PF03129 HGTP_anticodon: Antic 60.8 29 0.00062 26.1 5.7 82 85-166 2-86 (94)
18 cd00859 HisRS_anticodon HisRS 57.6 55 0.0012 23.5 6.7 76 83-159 2-78 (91)
19 cd00858 GlyRS_anticodon GlyRS 57.3 65 0.0014 25.8 7.6 78 81-161 25-106 (121)
20 COG0124 HisS Histidyl-tRNA syn 39.8 1.5E+02 0.0033 29.7 8.4 77 80-157 333-410 (429)
21 COG1783 XtmB Phage terminase l 38.1 1.1E+02 0.0023 30.5 6.8 87 73-166 16-112 (414)
22 PF08557 Lipid_DES: Sphingolip 37.4 14 0.00031 24.5 0.5 20 272-291 4-23 (39)
23 TIGR00985 3a0801s04tom mitocho 36.0 80 0.0017 27.0 5.0 9 3-11 38-46 (148)
24 PF04921 XAP5: XAP5, circadian 35.2 1.3E+02 0.0029 27.7 6.7 77 74-166 102-186 (239)
25 PF06258 Mito_fiss_Elm1: Mitoc 34.6 99 0.0021 29.4 6.0 55 83-143 183-238 (311)
26 TIGR00442 hisS histidyl-tRNA s 31.6 1.6E+02 0.0034 28.5 7.0 72 83-155 323-395 (397)
27 CHL00201 syh histidine-tRNA sy 31.1 1.3E+02 0.0029 29.7 6.4 83 83-166 326-409 (430)
28 PLN02530 histidine-tRNA ligase 30.9 2.1E+02 0.0046 28.9 7.9 80 84-164 403-483 (487)
29 PF12745 HGTP_anticodon2: Anti 30.8 3.3E+02 0.0071 25.5 8.7 74 83-158 6-89 (273)
30 PF06862 DUF1253: Protein of u 30.4 61 0.0013 32.6 3.9 40 70-111 25-64 (442)
31 cd02974 AhpF_NTD_N Alkyl hydro 27.4 3E+02 0.0064 21.4 6.8 67 79-158 16-84 (94)
32 cd00738 HGTP_anticodon HGTP an 24.2 2.9E+02 0.0062 20.1 8.4 75 84-159 3-81 (94)
33 PF05178 Kri1: KRI1-like famil 23.0 1.9E+02 0.0042 23.0 4.9 34 5-38 6-39 (101)
34 PRK00037 hisS histidyl-tRNA sy 23.0 3E+02 0.0065 26.6 7.2 83 82-165 318-401 (412)
35 PRK12420 histidyl-tRNA synthet 22.1 4.9E+02 0.011 25.5 8.6 77 83-161 339-416 (423)
36 KOG3112 Uncharacterized conser 20.8 86 0.0019 28.7 2.7 40 121-162 102-141 (262)
37 PF10673 DUF2487: Protein of u 20.4 1.5E+02 0.0033 25.1 4.0 37 107-143 54-95 (142)
No 1
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=4.2e-95 Score=645.50 Aligned_cols=289 Identities=61% Similarity=1.058 Sum_probs=282.3
Q ss_pred CchhhHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCCccchhhHHHhhhhhccCccCCcCCCCccchHHhhcCC
Q 022723 1 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATE 80 (293)
Q Consensus 1 m~r~~~r~rr~~l~~k~~~~k~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddE~~~~~~ 80 (293)
|+||++|+||||||+|++|+++++.+|+|+++++||++||+||+++++++..+.+++.++|+.+++...+.||||+++|.
T Consensus 1 MlRR~~R~RREylyrK~~E~~~k~~~ekk~~lr~ALe~nk~ip~elrkda~~l~d~~~~ed~~~~~~~~~vddEy~~ag~ 80 (290)
T KOG2781|consen 1 MLRRQARERREYLYRKALEEQDKSLQEKKRRLREALEENKKIPKELRKDALLLKDEIYYEDEGGEADDSHVDDEYRWAGE 80 (290)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHhHHHhhhhhhccccccccccccccHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999998777777899999999999
Q ss_pred CCCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeE
Q 022723 81 RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTA 160 (293)
Q Consensus 81 ~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~ 160 (293)
.+|||+|||||+||+++.+|+|+|+.||||++.+|||++.+.++++.|..+|+|++|||||++|.|++|+|||||.|||+
T Consensus 81 ~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfGPTa 160 (290)
T KOG2781|consen 81 EDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFGPTA 160 (290)
T ss_pred CCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCCCceEEEecCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCCCCCCCCeEEEEEecCCeEEEEEeeeeec
Q 022723 161 YFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQ 240 (293)
Q Consensus 161 ~F~I~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~p~~~~rRVv~F~n~~d~I~fRhy~y~~~ 240 (293)
+|+|.||++++||++. |++++.+||||||||+|++|++++.+|++|||.|+.+++|||||.|++|+|.||||.|...
T Consensus 161 ~Fsl~nvVmRhdip~~---G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP~pk~ds~Rvvtf~N~~DyIsFRhhvy~~~ 237 (290)
T KOG2781|consen 161 FFSLHNVVMRHDIPDI---GTMSEQKPHLIFDNFTTKLGKRVKTILKHLFPVPKDDSKRVVTFANRNDYISFRHHVYKKT 237 (290)
T ss_pred Eeeeeeeeeccccccc---ccccccCceEEeccccchHHHHHHHHHHHhCCCCcCCcccEEEEecCCceEEEEEEEEecC
Confidence 9999999999999998 9999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEeCCCCCccccccccCC
Q 022723 241 GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLGD 293 (293)
Q Consensus 241 ~~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~~~~~~t~r~r~~l~~ 293 (293)
+ .+.|.|.|+||||+|+||.|.+||++.+.|++||+++|||||+|||.+|+.
T Consensus 238 ~-~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR~~l~~ 289 (290)
T KOG2781|consen 238 D-GKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKRDFLSE 289 (290)
T ss_pred C-CceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhhhhhcc
Confidence 5 488999999999999999999999999999999999999999999999864
No 2
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=100.00 E-value=3.9e-73 Score=510.35 Aligned_cols=280 Identities=39% Similarity=0.648 Sum_probs=253.9
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHH-HHHHH-----HHHc---CCCCCccchhhHHHhhhhhccCccCCcCCCCccchHHh
Q 022723 6 IRLRREYLYRKSLEGKERLLYEKK-RKIKE-----ALQE---GKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYA 76 (293)
Q Consensus 6 ~r~rr~~l~~k~~~~k~~~~~~~~-~~~~~-----~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ddE~~ 76 (293)
++..|+..|.+.+++|.+++.+.+ ++.++ ++++ .+.+|++|++ .+..|+++++++++|.+.+..||||+
T Consensus 11 n~~~~~~~~~~~k~~k~~~~~~~rk~k~~~~~~~~el~~~~~~~~vp~TIe~--~R~yDeT~v~~~deEl~~d~~~deF~ 88 (302)
T KOG2780|consen 11 NKDKRQKSYMKNKHQKNLEKLKMRKEKAKEKRELPELGELRPQKNVPKTIES--TRVYDETIVEEEDEELQADLADDEFS 88 (302)
T ss_pred ccccchHHHhhhHHHhhhHHHHHHHHHHHHhhhchhhhhccCccCCcchhhh--hhhccccccCCCcHHHhhhhhhhhhH
Confidence 345567788888888888764422 22211 2222 5778888866 88889999999888888899999999
Q ss_pred h--cCCCCCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeC
Q 022723 77 N--ATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHL 154 (293)
Q Consensus 77 ~--~~~~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~l 154 (293)
. +....|||||||+.+|+.++..||.+|..|+|||....|++..++.++++|...++||++||+|+++.|++|.|+|+
T Consensus 89 ~~~~~~~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihl 168 (302)
T KOG2780|consen 89 PYFRREFSPKVLITTSKNPKRTTYKFASELLDIIPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHL 168 (302)
T ss_pred HHHhcccCccEEEEcCCCCcccHHHHHHHHHHhCCCceEEecCCchHHHHHHHHHHhcCCceEEEecCcCCccceEEEec
Confidence 9 55566999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCC-CCCCCCeEEEEEecCCeEEEE
Q 022723 155 PFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFR 233 (293)
Q Consensus 155 P~GPT~~F~I~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~-p~~~~rRVv~F~n~~d~I~fR 233 (293)
|+|||++|+++||++.+||... |.+++|.|+||+|||+|++|+.|++||++|||. |++.|||||+||||+||||||
T Consensus 169 P~GPT~~Fkls~~~~~kdi~k~---g~~t~h~PElIlNNFtTrlG~~v~r~f~sLfp~~p~f~gRrvvtFhnQrD~IfFR 245 (302)
T KOG2780|consen 169 PNGPTAYFKLSNVVLTKDIKKH---GRPTSHIPELILNNFTTRLGMTVGRLFASLFPHDPQFTGRRVVTFHNQRDYIFFR 245 (302)
T ss_pred CCCCceEEEeecccchhhhhhc---CCcccccchhhhhcccchhhHHHHHHHHHhCCCCccccceeEEEEEecCceEEEE
Confidence 9999999999999999999998 899999999999999999999999999999999 889999999999999999999
Q ss_pred EeeeeecCCCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEeCCCCCcccccccc
Q 022723 234 HHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 291 (293)
Q Consensus 234 hy~y~~~~~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~~~~~~t~r~r~~l 291 (293)
||+|.|.+...+|.|+||||||||+|+++|+|+||.++|+++|++++ |+|+|++|||
T Consensus 246 hhRY~Fkee~~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~~~~-~~tsrr~f~L 302 (302)
T KOG2780|consen 246 HHRYEFKEEEIKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWVHKK-METSRRKFFL 302 (302)
T ss_pred EEEEeecccccccchhhcCCceeeeehhhhhccccccceeeeeeecc-cccchhcccC
Confidence 99999976447899999999999999999999999999999999999 9999999997
No 3
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=2e-42 Score=303.26 Aligned_cols=173 Identities=38% Similarity=0.640 Sum_probs=80.7
Q ss_pred EEeCCCCChhHHHHHHHHHhcC-CCcEEeccCCc-cHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEEEE
Q 022723 87 LTTSRDPSAPLTQFVKELKFVF-PNAQRMNRGGQ-VISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGL 164 (293)
Q Consensus 87 ITtSr~ps~r~r~f~kdL~~l~-Pns~~~~R~~~-~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F~I 164 (293)
||||++||+++++|++||+.++ |||.+++|++. .+++++++|..++|+++++|++++++|++|||+++|+|||++|+|
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I 80 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI 80 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence 7999999999999999999999 99999999888 999999999999999999999999999999999999999999999
Q ss_pred eeeEeccccccccccCCCCCCCcEEEecCCCCch---hHHHHHHHHhcCCCCC------CCCCeEEEEEecCCe-EEEEE
Q 022723 165 LNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKL---GERTANILKHLFPVPK------ADTKRIITFANQSDY-ISFRH 234 (293)
Q Consensus 165 ~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~l---g~~i~~~l~~lFp~p~------~~~rRVv~F~n~~d~-I~fRh 234 (293)
.||++++|+++.. ....+++|+|||+||.++. +.+++++|++|||.+. ..++||++|++++|. |+|||
T Consensus 81 ~~~~~~~~~~~~~--~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~ 158 (191)
T PF04427_consen 81 ENYKLMKDIKSSS--KRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRH 158 (191)
T ss_dssp EEEE-HHHHT---------S---EEEEE----------------------------------------------------
T ss_pred EeEEEhhHhcccc--cCCCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999998652 2234778999999998766 9999999999999964 456999999999998 99999
Q ss_pred eeeeecC--CC----CcceeeeecceeEEEEEEe
Q 022723 235 HIYEKQG--GP----KSLELKEIGPRFELRLYQI 262 (293)
Q Consensus 235 y~y~~~~--~~----~~v~L~EiGPRftLkL~kI 262 (293)
| +...+ .. ..|+|+||||||||+|++|
T Consensus 159 Y-i~~~~~~~~~~~~~~v~L~EiGPr~~l~l~kI 191 (191)
T PF04427_consen 159 Y-IFKSGSKNPKKLLPRVELVEIGPRFTLKLRKI 191 (191)
T ss_dssp ----------------------------------
T ss_pred c-ccccccccccccccccccccccccccccccCC
Confidence 9 53222 01 3489999999999999987
No 4
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=5.7e-39 Score=277.61 Aligned_cols=172 Identities=40% Similarity=0.659 Sum_probs=153.7
Q ss_pred EEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEee--cCCCceEEEeeCCCCCeEEEE
Q 022723 86 LLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEH--RGVPDGLIICHLPFGPTAYFG 163 (293)
Q Consensus 86 lITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~--k~~p~~L~I~~lP~GPT~~F~ 163 (293)
|||||++||+++++|++||+.++|++.+.+|+++.+.+++++|...+.++.+++.|. +|+|++|||+++|+|||++|.
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~ 80 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK 80 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence 689999999999999999999999999999999999999999999866666666777 899999999999999999999
Q ss_pred EeeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCCCCC------CCCeEEEEEecCCeEEEEEeee
Q 022723 164 LLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKA------DTKRIITFANQSDYISFRHHIY 237 (293)
Q Consensus 164 I~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~p~~------~~rRVv~F~n~~d~I~fRhy~y 237 (293)
+.+|.+.+|+......+....++|+|||+||.+..|++++.+|+.|||.+.. ..+|||+|++++|.|+||||.|
T Consensus 81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i 160 (180)
T smart00879 81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI 160 (180)
T ss_pred EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEE
Confidence 9999999999874322335678999999999999999999999999999553 3699999999999999999999
Q ss_pred eecCCCCcceeeeecceeEE
Q 022723 238 EKQGGPKSLELKEIGPRFEL 257 (293)
Q Consensus 238 ~~~~~~~~v~L~EiGPRftL 257 (293)
.+..+.++++|+||||||+|
T Consensus 161 ~~~~~~~~v~l~eiGPr~~l 180 (180)
T smart00879 161 KFGKKKPRVELQEIGPRFTL 180 (180)
T ss_pred EccCCCCceEEEEecCCccC
Confidence 86223588999999999986
No 5
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=100.00 E-value=1.9e-37 Score=272.70 Aligned_cols=181 Identities=38% Similarity=0.540 Sum_probs=172.4
Q ss_pred CeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeC-CCCCeEE
Q 022723 83 PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHL-PFGPTAY 161 (293)
Q Consensus 83 pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~l-P~GPT~~ 161 (293)
||+|||||++||+++++|++||..+|||+.+..||+.++.++.+.|...|+++++|++|++|+|..|.++|+ |.||++.
T Consensus 2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~ 81 (191)
T COG2136 2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFS 81 (191)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEeeeEeccccccccccCC-CCCCCcEEEecCCCCchh-HHHHHHHHhc----CCC-CCCCCCeEEEEEecCCeEEEEE
Q 022723 162 FGLLNVVTRHDIKDRKSIGT-MPEAYPHLILDNFKSKLG-ERTANILKHL----FPV-PKADTKRIITFANQSDYISFRH 234 (293)
Q Consensus 162 F~I~n~~l~~di~~~~~~g~-~s~~~P~LI~nnF~t~lg-~~i~~~l~~l----Fp~-p~~~~rRVv~F~n~~d~I~fRh 234 (293)
|+|+|+++++++... ++ ...+.|++|+|||++.+| ..+.++|+.+ |++ +......|+++++++++++||+
T Consensus 82 f~l~~v~l~re~~~~---~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~ 158 (191)
T COG2136 82 FKLSGVKLRREIPVL---GPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRR 158 (191)
T ss_pred EEEecceEEEecccc---CCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEe
Confidence 999999999999988 66 567899999999999998 8999999999 887 6677899999999999999999
Q ss_pred eeeeecCCCCcceeeeecceeEEEEEEeecccCC
Q 022723 235 HIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVD 268 (293)
Q Consensus 235 y~y~~~~~~~~v~L~EiGPRftLkL~kI~~Gt~~ 268 (293)
|.|.+.+ ..+.++|+||+|+|++..++.|+.+
T Consensus 159 ~~~~~~~--~~~~~~~vgp~~~~r~~~~~~g~~~ 190 (191)
T COG2136 159 HRRVFEE--DGIGLEEVGPRLTLRLWRMEDGRGE 190 (191)
T ss_pred eeeEeee--eeeeEEEeCceeeeehhhhhhcccc
Confidence 9999986 8899999999999999999999653
No 6
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-37 Score=283.70 Aligned_cols=194 Identities=20% Similarity=0.345 Sum_probs=169.9
Q ss_pred CCCeEEEEeCCCCChhHHHHHHHHHhcC-CCcEEe--ccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCC
Q 022723 81 RDPKILLTTSRDPSAPLTQFVKELKFVF-PNAQRM--NRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG 157 (293)
Q Consensus 81 ~~pkvlITtSr~ps~r~r~f~kdL~~l~-Pns~~~--~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~G 157 (293)
..|.++|.+++-.+..+++|..||+++| ||++.. .|+.|+|||++.+|+.+|+||++|++.+.. ..+|+|.++|.|
T Consensus 24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~-nlslki~R~PqG 102 (405)
T KOG2963|consen 24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQG 102 (405)
T ss_pred cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccC-ceeEEEEecCCC
Confidence 4689999999999999999999999999 998754 468999999999999999999999999885 589999999999
Q ss_pred CeEEEEEeeeEeccccccccccCC----CCCCCcEEEecCCCC---chhHHHHHHHHhcCCCCC------CCCCeEEEEE
Q 022723 158 PTAYFGLLNVVTRHDIKDRKSIGT----MPEAYPHLILDNFKS---KLGERTANILKHLFPVPK------ADTKRIITFA 224 (293)
Q Consensus 158 PT~~F~I~n~~l~~di~~~~~~g~----~s~~~P~LI~nnF~t---~lg~~i~~~l~~lFp~p~------~~~rRVv~F~ 224 (293)
||++|+|..|+|.+|+...+++.. ...++|+||+|||++ ++.+++..|||+|||..+ .+.+||+.++
T Consensus 103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllin 182 (405)
T KOG2963|consen 103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLIN 182 (405)
T ss_pred CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEe
Confidence 999999999999999998876543 346899999999985 467899999999999954 4569999999
Q ss_pred ec--CCeEEEEEeeeeec-------------------------------------C------------------------
Q 022723 225 NQ--SDYISFRHHIYEKQ-------------------------------------G------------------------ 241 (293)
Q Consensus 225 n~--~d~I~fRhy~y~~~-------------------------------------~------------------------ 241 (293)
+. .+.|.||||.|... |
T Consensus 183 yn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~~~ 262 (405)
T KOG2963|consen 183 YNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDVKE 262 (405)
T ss_pred cCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccchh
Confidence 74 56999999998630 0
Q ss_pred ----------------CCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEe
Q 022723 242 ----------------GPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVI 278 (293)
Q Consensus 242 ----------------~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~ 278 (293)
.++.|+|+|||||+||+|++|++|.++ |++.|..
T Consensus 263 eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~---GkVlyH~ 312 (405)
T KOG2963|consen 263 EVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICE---GKVLYHE 312 (405)
T ss_pred hhhccccccccCCCcccccceeeEeecccceEEEEEeeccccc---cceEEee
Confidence 135699999999999999999999997 8887743
No 7
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-37 Score=273.81 Aligned_cols=200 Identities=21% Similarity=0.328 Sum_probs=180.8
Q ss_pred CCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEecc--CCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCe
Q 022723 82 DPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNR--GGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPT 159 (293)
Q Consensus 82 ~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R--~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT 159 (293)
..+|||++||+.|-++|+||+||..++|++....+ .+..+..|.++|..++|+.+++|..++....|||++..|+|||
T Consensus 49 K~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpS 128 (299)
T KOG2971|consen 49 KERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPS 128 (299)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCc
Confidence 46999999999999999999999999999987665 5777889999999999999999999999999999999999999
Q ss_pred EEEEEeeeEeccccccccccCCC-CCCCcEEEec-CCCC-chhHHHHHHHHhcCCCCCC------CCCeEEEEEecCCeE
Q 022723 160 AYFGLLNVVTRHDIKDRKSIGTM-PEAYPHLILD-NFKS-KLGERTANILKHLFPVPKA------DTKRIITFANQSDYI 230 (293)
Q Consensus 160 ~~F~I~n~~l~~di~~~~~~g~~-s~~~P~LI~n-nF~t-~lg~~i~~~l~~lFp~p~~------~~rRVv~F~n~~d~I 230 (293)
+.|.|.|++++.|++.+ ||+ .+++|+|.|+ +|++ ++.++++++|.+.|..|.. --++|++|+..+|.|
T Consensus 129 vkFlv~n~hTM~Elkmt---gN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~I 205 (299)
T KOG2971|consen 129 VKFLVHNVHTMAELKMT---GNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKI 205 (299)
T ss_pred eEEehhhhhhHHHhCCc---cccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeE
Confidence 99999999999999998 885 6799999998 5986 7789999999999977652 239999999999999
Q ss_pred EEEEeeeeecCCCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEeCCCCCccccccc
Q 022723 231 SFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKF 290 (293)
Q Consensus 231 ~fRhy~y~~~~~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~~~~~~t~r~r~~ 290 (293)
|||.|+|... +++.|.||||||+|.+++|.+|+|+ |.+.|.+..|...++.|..
T Consensus 206 WfRnyqI~~~---ed~~L~EiGPRfvl~~ikif~gsFg---G~~lYenp~yvspn~~r~~ 259 (299)
T KOG2971|consen 206 WFRNYQISEE---EDKTLIEIGPRFVLNVIKIFEGSFG---GPTLYENPKYVSPNMIRAV 259 (299)
T ss_pred EEEEeEeccc---cCcceeeeccHHHHhHHHHHhccCC---CceeecCccccCHHHHHHH
Confidence 9999999633 6699999999999999999999997 8899999889887776654
No 8
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-33 Score=248.02 Aligned_cols=208 Identities=21% Similarity=0.367 Sum_probs=181.2
Q ss_pred chHHhh---cC-CCCCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEecc--CCccHHHHHHHhhhCCCceEEEEEeecCC
Q 022723 72 DDEYAN---AT-ERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNR--GGQVISEIIETCRAHEFTDVVLVHEHRGV 145 (293)
Q Consensus 72 ddE~~~---~~-~~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R--~~~~lkdlv~~a~~~~~t~lii~~e~k~~ 145 (293)
|.||-. +| ...+++||++||++|.+.+++++||..++|++....+ -+..+.++.++|...+|+++++|..++..
T Consensus 16 ~~e~~qgn~~~f~~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~ 95 (283)
T COG5154 16 DEEYVQGNSAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRS 95 (283)
T ss_pred hhHHhccchhcccccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccc
Confidence 456665 22 3357999999999999999999999999999987766 46779999999999999999999999999
Q ss_pred CceEEEeeCCCCCeEEEEEeeeEeccccccccccCC-CCCCCcEEEecC-CCC-chhHHHHHHHHhcCCCCC------CC
Q 022723 146 PDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGT-MPEAYPHLILDN-FKS-KLGERTANILKHLFPVPK------AD 216 (293)
Q Consensus 146 p~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~g~-~s~~~P~LI~nn-F~t-~lg~~i~~~l~~lFp~p~------~~ 216 (293)
..+||+++.|+|||+.|.+.|.++++|+... |+ +.++.|.|.|+. |.+ ++.+.++++|++.|..|. ..
T Consensus 96 Dlyl~~ar~pnGptvkF~~~NlhTMdelNft---gN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpf 172 (283)
T COG5154 96 DLYLMGARIPNGPTVKFRMHNLHTMDELNFT---GNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPF 172 (283)
T ss_pred cceeeeccCCCCCeEEEEEeccchHhhcCCc---cccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccc
Confidence 9999999999999999999999999999887 77 567999999986 875 778899999999998764 22
Q ss_pred CCeEEEEEecCCeEEEEEeeeeec--CCCCcceeeeecceeEEEEEEeecccCCCCCCcEEEEeCCCCCcc
Q 022723 217 TKRIITFANQSDYISFRHHIYEKQ--GGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTS 285 (293)
Q Consensus 217 ~rRVv~F~n~~d~I~fRhy~y~~~--~~~~~v~L~EiGPRftLkL~kI~~Gt~~~~~g~~ew~~~~~~~t~ 285 (293)
.++|++|...+|.||||.|.|..+ ++.++|+|.||||||.|.+++|.+|+|+ |...|....|..+.
T Consensus 173 iD~v~~f~i~DgkIWvR~YeI~re~ed~~~dv~L~EIGPRfVmtvi~iLEgsFg---Gp~iYkn~~~vs~~ 240 (283)
T COG5154 173 IDKVLCFFILDGKIWVRCYEIGRENEDKSKDVKLEEIGPRFVMTVIKILEGSFG---GPAIYKNETFVSST 240 (283)
T ss_pred hhheEEEEEecCeEEEEEEeeccccccccccceeeeeccHHHHHHHHHHHhccC---CceeeecccccchH
Confidence 389999999999999999998643 2346799999999999999999999997 77888777776543
No 9
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.97 E-value=5.8e-30 Score=226.86 Aligned_cols=173 Identities=16% Similarity=0.292 Sum_probs=139.0
Q ss_pred EEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCC---CeEE
Q 022723 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG---PTAY 161 (293)
Q Consensus 85 vlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~G---PT~~ 161 (293)
||||||++||+++++|++||..+||||.+++||++++++|++.|..+|+|++|||+|++|+|++|.|+|||.| ||++
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~ 81 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY 81 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999855 5999
Q ss_pred EEEeeeEeccccc--cccccCCCCCCCcEEEecCCCCchhH-HHHHHHHhcCCCC---C-CCC----------CeEEEEE
Q 022723 162 FGLLNVVTRHDIK--DRKSIGTMPEAYPHLILDNFKSKLGE-RTANILKHLFPVP---K-ADT----------KRIITFA 224 (293)
Q Consensus 162 F~I~n~~l~~di~--~~~~~g~~s~~~P~LI~nnF~t~lg~-~i~~~l~~lFp~p---~-~~~----------rRVv~F~ 224 (293)
|+|+|+++++||. +. +++++|+|++|.+||.+.+|. ..+..++..+..| . ..| +-|+...
T Consensus 82 FkLsnV~l~~ei~~~~~---~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vLVV~ 158 (208)
T PRK03972 82 LYLHGIKLQREMGFRNL---RPIREDMPLVITTAKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLGVIE 158 (208)
T ss_pred EEEccEEEHHHcccCCC---CCccccccEEEEcCCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEEEEe
Confidence 9999999999994 45 789999999999999999976 6667777777652 1 111 1122222
Q ss_pred ecCCeEEEEEeeeeecCCCCcceeeeecceeEEEEEEeeccc
Q 022723 225 NQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGT 266 (293)
Q Consensus 225 n~~d~I~fRhy~y~~~~~~~~v~L~EiGPRftLkL~kI~~Gt 266 (293)
..---.-+-.|++.... -.-+||-+..+.+...+|-
T Consensus 159 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 194 (208)
T PRK03972 159 RHPRGMAVNFYRLDVTK------ERPVGPLIFVKIWIMEDGR 194 (208)
T ss_pred cCCCceEEEEEEecccc------ccccCCcEEEEEEEeccCc
Confidence 22111233344443321 2457999999988888775
No 10
>PRK00933 ribosomal biogenesis protein; Validated
Probab=99.54 E-value=1.9e-13 Score=118.22 Aligned_cols=114 Identities=25% Similarity=0.440 Sum_probs=88.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEEEE
Q 022723 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGL 164 (293)
Q Consensus 85 vlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F~I 164 (293)
++||||++||.++++|+++|...+ |+.+++||+.+++++++.|.. .+++||+|++|+|++|.|+..-..+.+.+.+
T Consensus 1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~ 76 (165)
T PRK00933 1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL 76 (165)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence 489999999999999999999999 999999999999999887654 4999999999999999999998777766654
Q ss_pred eeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcC
Q 022723 165 LNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLF 210 (293)
Q Consensus 165 ~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lF 210 (293)
++.+..+.... .+....|.+ +++... +..++++|....
T Consensus 77 -~v~~~~~~~~~----~~~~~~p~~--~~~~~~-~~~~~e~f~~~l 114 (165)
T PRK00933 77 -SVKLQREISGP----VFKNRRPIK--SAFDVG-GDELAELFDYFL 114 (165)
T ss_pred -EeeeecccCcc----eeecCCCcc--cchhhH-HHHHHHHHHHHH
Confidence 57777777542 233444533 333322 455666555533
No 11
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.5e-13 Score=124.32 Aligned_cols=171 Identities=22% Similarity=0.293 Sum_probs=134.3
Q ss_pred CCChhHHHHHHHHHhcC-CCcEEeccCCcc-----HHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCC---eEEE
Q 022723 92 DPSAPLTQFVKELKFVF-PNAQRMNRGGQV-----ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGP---TAYF 162 (293)
Q Consensus 92 ~ps~r~r~f~kdL~~l~-Pns~~~~R~~~~-----lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GP---T~~F 162 (293)
..+..+.+-+.||..+- |-+..++|+++. -..+..+...+.|+-+++-+-+++.|++|+|++.-++- .+.+
T Consensus 37 ~~~~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiEl 116 (307)
T KOG3031|consen 37 KTNKTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIEL 116 (307)
T ss_pred hhchHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHH
Confidence 44578899999999996 999999997642 12344455555555555555558899999999999986 5889
Q ss_pred EEeeeEeccccccccccCCCCCCCcEEEecC--CC-CchhHHHHHHHHhcCCCCC-----CCC-CeEEEEEecCCe-EEE
Q 022723 163 GLLNVVTRHDIKDRKSIGTMPEAYPHLILDN--FK-SKLGERTANILKHLFPVPK-----ADT-KRIITFANQSDY-ISF 232 (293)
Q Consensus 163 ~I~n~~l~~di~~~~~~g~~s~~~P~LI~nn--F~-t~lg~~i~~~l~~lFp~p~-----~~~-rRVv~F~n~~d~-I~f 232 (293)
.|.||+..+|+... +-..+..|.|+|+| |. ++..++++.+|...|..+. ..| ++|+.|+..++. |+|
T Consensus 117 gI~~ykslsdF~~~---k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~ 193 (307)
T KOG3031|consen 117 GIENYKSLSDFKAA---KITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLF 193 (307)
T ss_pred hhhhhhhhhhhhcc---CCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeee
Confidence 99999999999876 43456789999998 54 4667899999999998854 234 899999998775 999
Q ss_pred EEeeeeec--C-CCCcceeeeecceeEEEEEEeecc
Q 022723 233 RHHIYEKQ--G-GPKSLELKEIGPRFELRLYQIKLG 265 (293)
Q Consensus 233 Rhy~y~~~--~-~~~~v~L~EiGPRftLkL~kI~~G 265 (293)
|||+.... + ..++++|.|+||+++|.+.+...-
T Consensus 194 r~Y~lklkKs~~~~PRiELeE~GPsldf~irR~~~a 229 (307)
T KOG3031|consen 194 RVYRLKLKKSGTRTPRIELEEMGPSLDFEIRRTKLA 229 (307)
T ss_pred eeeeeeeeeccCCCCceehhhcCCceeEEEEeccCC
Confidence 99997632 2 246799999999999999988753
No 12
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=1.5e-06 Score=78.73 Aligned_cols=169 Identities=14% Similarity=0.157 Sum_probs=122.4
Q ss_pred ChhHHHHHHHHHhcC-CCcEEeccCCcc--HH---HHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCC---eEEEEE
Q 022723 94 SAPLTQFVKELKFVF-PNAQRMNRGGQV--IS---EIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGP---TAYFGL 164 (293)
Q Consensus 94 s~r~r~f~kdL~~l~-Pns~~~~R~~~~--lk---dlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GP---T~~F~I 164 (293)
++.+...+=|+..+- |-...+.|++.. .. -+--+...+.+.-.+++...++.+.+|.+.+.-+-- .+.|.|
T Consensus 39 ~k~lldvi~d~~alkkp~~i~f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i 118 (316)
T COG5106 39 RKTLLDVICDTEALKKPKEIGFIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKI 118 (316)
T ss_pred chhhhhhhcchhhhccchhhccccCCcccccccCCHHHHHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhh
Confidence 345566666776664 888888886542 11 123345566677777788888899999999887653 478899
Q ss_pred eeeEeccccccccccCCCCCCCcEEEecC--CCC-chhHHHHHHHHhcCCC-CC--CCC---CeEEEEEecCC-------
Q 022723 165 LNVVTRHDIKDRKSIGTMPEAYPHLILDN--FKS-KLGERTANILKHLFPV-PK--ADT---KRIITFANQSD------- 228 (293)
Q Consensus 165 ~n~~l~~di~~~~~~g~~s~~~P~LI~nn--F~t-~lg~~i~~~l~~lFp~-p~--~~~---rRVv~F~n~~d------- 228 (293)
.+|++..|+... |...+-.|.++|.| |++ |.-++|+.+|-..|.. +. .++ ..|+.-..+++
T Consensus 119 ~~yksvsdF~~~---~~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~pl 195 (316)
T COG5106 119 NRYKSVSDFECA---GPELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPL 195 (316)
T ss_pred hhhhehhhhhcc---CCccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccc
Confidence 999999999876 65567789999997 875 5678999999999987 32 222 56777765432
Q ss_pred -eEEEEEeeee---ecCCCCcceeeeecceeEEEEEEeecc
Q 022723 229 -YISFRHHIYE---KQGGPKSLELKEIGPRFELRLYQIKLG 265 (293)
Q Consensus 229 -~I~fRhy~y~---~~~~~~~v~L~EiGPRftLkL~kI~~G 265 (293)
.+.||-|.-. ...+..++.|.|+|||+++++.++.--
T Consensus 196 p~v~fRVyk~k~~kt~~~lpr~elee~GPrldf~i~R~~~~ 236 (316)
T COG5106 196 PLVVFRVYKTKLLKTKTNLPRLELEECGPRLDFEIVRSYHC 236 (316)
T ss_pred cceeeeeeecccccccCCCCceehhhcccceeeEEEeecCC
Confidence 2578987643 122367899999999999999998743
No 13
>PRK03972 ribosomal biogenesis protein; Validated
Probab=95.77 E-value=0.081 Score=47.65 Aligned_cols=76 Identities=14% Similarity=0.274 Sum_probs=58.3
Q ss_pred EEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEee------CCCCC
Q 022723 85 ILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICH------LPFGP 158 (293)
Q Consensus 85 vlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~------lP~GP 158 (293)
.+|||+.+++..+...++.+...+ +..+++|++.++.+|. ...+..+++||.-+-. ...+.+++ -|-||
T Consensus 107 ~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~-~~~~~~~~~~~~~~~~~~~ 181 (208)
T PRK03972 107 LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPR-GMAVNFYRLDVTKERPVGP 181 (208)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCC-ceEEEEEEeccccccccCC
Confidence 589999999999999999999999 8999999999999875 4445678888865521 13445555 36688
Q ss_pred eEEEEEe
Q 022723 159 TAYFGLL 165 (293)
Q Consensus 159 T~~F~I~ 165 (293)
.+.+++-
T Consensus 182 ~~~~~~~ 188 (208)
T PRK03972 182 LIFVKIW 188 (208)
T ss_pred cEEEEEE
Confidence 8777654
No 14
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=77.51 E-value=1.4 Score=41.90 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=31.1
Q ss_pred eeecceeEEEEEEeecccCCCC--CCcEEEEeCCCCCcccc
Q 022723 249 KEIGPRFELRLYQIKLGTVDQS--EAQIEWVIRPYMNTSKK 287 (293)
Q Consensus 249 ~EiGPRftLkL~kI~~Gt~~~~--~g~~ew~~~~~~~t~r~ 287 (293)
.-|||-|+|.+|.|..|--..+ +|...+.|+-.|..+|=
T Consensus 187 ~qvGP~F~lslY~lF~~~sr~~~~~~~~~~tWKE~~~ka~v 227 (302)
T PF05508_consen 187 VQVGPTFTLSLYMLFYGHSRPKYEEGLRKITWKEVMHKARV 227 (302)
T ss_pred cccCCcEEEEeeheecccccccccccccCcceeeeccceEE
Confidence 5689999999999999987765 47777778887776653
No 15
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=72.59 E-value=20 Score=26.51 Aligned_cols=75 Identities=9% Similarity=0.057 Sum_probs=52.2
Q ss_pred eEEEEeCCC-CChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCe
Q 022723 84 KILLTTSRD-PSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPT 159 (293)
Q Consensus 84 kvlITtSr~-ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT 159 (293)
.++|+.... .-.....++..|+..==.+....+ +.+++.-...|...|+..+|++++..-..+.+.+..+..|-.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~-~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~ 78 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR-NEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDL 78 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcc
Confidence 456665533 334677788888875213333345 468999999999999999999998754456777777776644
No 16
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=67.59 E-value=24 Score=26.41 Aligned_cols=67 Identities=9% Similarity=-0.046 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEEE
Q 022723 96 PLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFG 163 (293)
Q Consensus 96 r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F~ 163 (293)
....++..|+.-==.+....++ .+++.-+..|...|+..++++++..-....+.|..+-.|-.....
T Consensus 19 ~a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~~~~~~ 85 (94)
T cd00861 19 LAEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGEKEEIS 85 (94)
T ss_pred HHHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCcceEEe
Confidence 4455566665531122333443 488888899999999999999987544567888888777654433
No 17
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=60.80 E-value=29 Score=26.09 Aligned_cols=82 Identities=7% Similarity=0.146 Sum_probs=57.6
Q ss_pred EEEEeCCCCChhHHHHHHHHHhcCCC-c--EEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEE
Q 022723 85 ILLTTSRDPSAPLTQFVKELKFVFPN-A--QRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAY 161 (293)
Q Consensus 85 vlITtSr~ps~r~r~f~kdL~~l~Pn-s--~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~ 161 (293)
|.|+.-..-+.....++.++...+.+ . ..+.-...++..=+..|...|+..+|++++..-..+.+.|-.+-.|...+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~ 81 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQET 81 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEEE
Confidence 44554443355677788888877732 2 23333788888889999999999999999885434678888888886655
Q ss_pred EEEee
Q 022723 162 FGLLN 166 (293)
Q Consensus 162 F~I~n 166 (293)
..+.+
T Consensus 82 v~~~e 86 (94)
T PF03129_consen 82 VSLEE 86 (94)
T ss_dssp EECCH
T ss_pred EEHHH
Confidence 55443
No 18
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=57.57 E-value=55 Score=23.49 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=49.6
Q ss_pred CeEEEEeCCCC-ChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCe
Q 022723 83 PKILLTTSRDP-SAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPT 159 (293)
Q Consensus 83 pkvlITtSr~p-s~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT 159 (293)
+.++|...... -.....++..|+.--=.+..... ..++++....|...|+..++++.+.......+.+..+..|..
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~-~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~ 78 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYG-GRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQ 78 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecC-CCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCc
Confidence 35777765543 23567788888874112222222 236889999999999999999986533334577777766654
No 19
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=57.34 E-value=65 Score=25.75 Aligned_cols=78 Identities=10% Similarity=-0.111 Sum_probs=52.9
Q ss_pred CCCeEEEEeCC--CC-ChhHHHHHHHHHhcCCCcE-EeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCC
Q 022723 81 RDPKILLTTSR--DP-SAPLTQFVKELKFVFPNAQ-RMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPF 156 (293)
Q Consensus 81 ~~pkvlITtSr--~p-s~r~r~f~kdL~~l~Pns~-~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~ 156 (293)
..+.++|+... .. ......++..|+.- .-+. ...+ .+++.-+..|...|+..++++++..-....+.+..+..
T Consensus 25 ap~~v~Ii~~~~~~~~~~~a~~la~~LR~~-gi~v~~d~~--~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~ 101 (121)
T cd00858 25 APIKVAVLPLVKRDELVEIAKEISEELREL-GFSVKYDDS--GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERDS 101 (121)
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHHHHHC-CCEEEEeCC--CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECCC
Confidence 34577777755 22 23556677777653 1222 2234 68999999999999999999998865556788888877
Q ss_pred CCeEE
Q 022723 157 GPTAY 161 (293)
Q Consensus 157 GPT~~ 161 (293)
|-...
T Consensus 102 ~~~~~ 106 (121)
T cd00858 102 MRQVR 106 (121)
T ss_pred CceEE
Confidence 75433
No 20
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.78 E-value=1.5e+02 Score=29.65 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=61.9
Q ss_pred CCCCeEEEEeCCCCC-hhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCC
Q 022723 80 ERDPKILLTTSRDPS-APLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFG 157 (293)
Q Consensus 80 ~~~pkvlITtSr~ps-~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~G 157 (293)
...+.|+|.....-. .....++..||.--+++....-++. ++.-...|...|+..+++++++.-.-..+.|-++-.|
T Consensus 333 ~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~-~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~ 410 (429)
T COG0124 333 ETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRK-LKKQFKYADKLGARFAVILGEDELANGVVTVKDLATG 410 (429)
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEecccc-HHHHHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCC
Confidence 345789999887765 7889999999998777765544333 9999999999999999999999755567888888777
No 21
>COG1783 XtmB Phage terminase large subunit [General function prediction only]
Probab=38.06 E-value=1.1e+02 Score=30.53 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=57.4
Q ss_pred hHHhhcCCCCCe-EEEEeCCCCChhHHHHHHHHHhcC--CCc-EEecc-CC-----ccHHHHHHHhhhCCCceEEEEEee
Q 022723 73 DEYANATERDPK-ILLTTSRDPSAPLTQFVKELKFVF--PNA-QRMNR-GG-----QVISEIIETCRAHEFTDVVLVHEH 142 (293)
Q Consensus 73 dE~~~~~~~~pk-vlITtSr~ps~r~r~f~kdL~~l~--Pns-~~~~R-~~-----~~lkdlv~~a~~~~~t~lii~~e~ 142 (293)
++|...- .+| .++..+++.++.--...+-+.++| |.+ ...-| .. .+-.+|.+.+..+|+++.+++...
T Consensus 16 ~~y~f~w--~qk~~i~~G~rGS~KSy~~alk~i~kl~~~~~~d~lvIR~v~nt~k~St~~~~~e~l~e~gv~~~f~~~~s 93 (414)
T COG1783 16 EAYVFFW--NQKYFIAKGGRGSSKSYATALKNIEKLLSEPGIDVLVIREVENTHKQSTYALFKEALSELGVTKFFKISKS 93 (414)
T ss_pred hhhhccc--hheEEEEEccCCCchhHHHHHHHHHHHHcCCCCcEEEEEEeccccchhHHHHHHHHHHHhCccceeEEecC
Confidence 4555422 234 445556665555555666666776 777 33334 22 336678999999999999999865
Q ss_pred cCCCceEEEeeCCCCCeEEEEEee
Q 022723 143 RGVPDGLIICHLPFGPTAYFGLLN 166 (293)
Q Consensus 143 k~~p~~L~I~~lP~GPT~~F~I~n 166 (293)
. +-+.+.+.|--+.|+...
T Consensus 94 ~-----pe~i~~~~G~ri~F~G~d 112 (414)
T COG1783 94 S-----PEIILKDTGQRIIFKGLD 112 (414)
T ss_pred C-----hhheecccCcEEEEecCC
Confidence 3 446778999988888664
No 22
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=37.40 E-value=14 Score=24.52 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=18.4
Q ss_pred CcEEEEeCCCCCcccccccc
Q 022723 272 AQIEWVIRPYMNTSKKRKFL 291 (293)
Q Consensus 272 g~~ew~~~~~~~t~r~r~~l 291 (293)
.+++|++...-..+||+.+|
T Consensus 4 ~DF~W~~~~ePH~~RRk~IL 23 (39)
T PF08557_consen 4 NDFEWVYTDEPHASRRKEIL 23 (39)
T ss_pred cccEEeCCCCccHHHHHHHH
Confidence 78999999999999999888
No 23
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=35.95 E-value=80 Score=27.05 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=5.6
Q ss_pred hhhHhHHHH
Q 022723 3 RRNIRLRRE 11 (293)
Q Consensus 3 r~~~r~rr~ 11 (293)
||+.|.||.
T Consensus 38 RkkLr~rr~ 46 (148)
T TIGR00985 38 RKKLRRRRK 46 (148)
T ss_pred HHHHHHHHH
Confidence 566666665
No 24
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=35.16 E-value=1.3e+02 Score=27.72 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=49.6
Q ss_pred HHhh-cCCCCCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEE-
Q 022723 74 EYAN-ATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLII- 151 (293)
Q Consensus 74 E~~~-~~~~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I- 151 (293)
-|+. .|..-|+.+-+.-+ ..+-+|+.-.+..+. +++-+++.. ++.+||+|-++-=.|....+
T Consensus 102 ~fsywDGs~hrr~v~vKKG---dtI~~FL~~~r~~l~------------~~f~el~~v-svd~LM~VkedlIiPHhy~FY 165 (239)
T PF04921_consen 102 PFSYWDGSGHRRTVRVKKG---DTIWQFLEKCRKQLA------------KEFRELRRV-SVDDLMYVKEDLIIPHHYTFY 165 (239)
T ss_pred EEEEECCCCCcceEEEcCC---CCHHHHHHHHHHHHH------------HHhHHHHhc-CHhheeeeccceeccCCceee
Confidence 5666 67777884444333 367888888888774 445555544 78999999876444544444
Q ss_pred ------eeCCCCCeEEEEEee
Q 022723 152 ------CHLPFGPTAYFGLLN 166 (293)
Q Consensus 152 ------~~lP~GPT~~F~I~n 166 (293)
+.-+.||-+.|.+..
T Consensus 166 ~fI~nka~GksGpLF~fd~~~ 186 (239)
T PF04921_consen 166 DFIVNKARGKSGPLFDFDVHD 186 (239)
T ss_pred eeeeccccCCCCCeeeccCCc
Confidence 333667777777665
No 25
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=34.58 E-value=99 Score=29.41 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=38.2
Q ss_pred CeEEEEeCCCCChhHHHHHHHHHhcCCCcEEecc-CCccHHHHHHHhhhCCCceEEEEEeec
Q 022723 83 PKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNR-GGQVISEIIETCRAHEFTDVVLVHEHR 143 (293)
Q Consensus 83 pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R-~~~~lkdlv~~a~~~~~t~lii~~e~k 143 (293)
=.++|||||+....+...++++..-.|....... +.+.+-+++.. .+.|+|+++.
T Consensus 183 ~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~------ad~i~VT~DS 238 (311)
T PF06258_consen 183 GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAA------ADAIVVTEDS 238 (311)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHh------CCEEEEcCcc
Confidence 3899999999888888887777765666544433 56666555544 4677777764
No 26
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=31.58 E-value=1.6e+02 Score=28.47 Aligned_cols=72 Identities=10% Similarity=0.106 Sum_probs=46.5
Q ss_pred CeEEEEeCC-CCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCC
Q 022723 83 PKILLTTSR-DPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLP 155 (293)
Q Consensus 83 pkvlITtSr-~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP 155 (293)
+.|+|.+-. ..-....+.+..|+..-=.+.... ...++++-+..|...|+..++++.+.......+.|-.+-
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~-~~~~l~k~~~~a~~~g~~~~i~ig~~e~~~~~v~vrnl~ 395 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDL-GGRKLKKQLKYADKLGARFAVILGEDELANGTVTLKDLE 395 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeC-CCCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEeCC
Confidence 577777632 222345677777777531222222 345688899999999999999999865444556665543
No 27
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=31.11 E-value=1.3e+02 Score=29.72 Aligned_cols=83 Identities=7% Similarity=-0.026 Sum_probs=56.8
Q ss_pred CeEEEEeCC-CCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEE
Q 022723 83 PKILLTTSR-DPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAY 161 (293)
Q Consensus 83 pkvlITtSr-~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~ 161 (293)
+.|+|+... ........+++.|+.-=-.+....+ ..++++.+..|...|+..++++.+..-..+.+.|-++-.|-...
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~-~~~l~k~~k~A~~~~~~~viiiG~~E~~~~~vtvk~l~~~~q~~ 404 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLS-SSNFHKQIKQAGKKRAKACIILGDNEIMDNCITIKWLDEQVQEN 404 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeC-CCCHHHHHHHHHHcCCCEEEEEechHHhCCcEEEEECCCCCcEE
Confidence 347777632 2334566777888764223333333 35689999999999999999999876556778888888886655
Q ss_pred EEEee
Q 022723 162 FGLLN 166 (293)
Q Consensus 162 F~I~n 166 (293)
..+.+
T Consensus 405 i~~~~ 409 (430)
T CHL00201 405 AQYSN 409 (430)
T ss_pred EcHHH
Confidence 54443
No 28
>PLN02530 histidine-tRNA ligase
Probab=30.94 E-value=2.1e+02 Score=28.85 Aligned_cols=80 Identities=10% Similarity=-0.002 Sum_probs=53.7
Q ss_pred eEEEEeCC-CCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEE
Q 022723 84 KILLTTSR-DPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYF 162 (293)
Q Consensus 84 kvlITtSr-~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F 162 (293)
.++|+.-. ..-......++.|+.-==.+..... ..++++.+..|...++..++++++..-..+.+.|-++-.|-...+
T Consensus 403 dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~-~~~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v 481 (487)
T PLN02530 403 DDVVFALDEDLQGAAAGVASRLREKGRSVDLVLE-PKKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEV 481 (487)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecC-CCCHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEe
Confidence 57777632 2223566777777774112222233 356899999999999999999998754456788888877766554
Q ss_pred EE
Q 022723 163 GL 164 (293)
Q Consensus 163 ~I 164 (293)
.+
T Consensus 482 ~~ 483 (487)
T PLN02530 482 KL 483 (487)
T ss_pred ch
Confidence 43
No 29
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=30.78 E-value=3.3e+02 Score=25.52 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=47.4
Q ss_pred CeEEEEeCCCCChhHHHHHHHHHhcC----CCcEEeccCCccHHHHHHHhhhCCCceEEEEEeec-----C-CCceEEEe
Q 022723 83 PKILLTTSRDPSAPLTQFVKELKFVF----PNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHR-----G-VPDGLIIC 152 (293)
Q Consensus 83 pkvlITtSr~ps~r~r~f~kdL~~l~----Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k-----~-~p~~L~I~ 152 (293)
..|||+.-+. +. ++...-++..-| =.+........++.|+++.|...|++.+|++.+.. + .-..|+|-
T Consensus 6 CDVLV~S~~~-~~-L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK 83 (273)
T PF12745_consen 6 CDVLVCSFGP-SS-LRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVK 83 (273)
T ss_pred ceEEEEeCCh-hH-HHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEe
Confidence 5688855444 33 333333333333 13445456677999999999999999999999853 1 11237777
Q ss_pred eCCCCC
Q 022723 153 HLPFGP 158 (293)
Q Consensus 153 ~lP~GP 158 (293)
++-.+-
T Consensus 84 ~l~~~~ 89 (273)
T PF12745_consen 84 SLEKKK 89 (273)
T ss_pred ccCCCc
Confidence 777664
No 30
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=30.45 E-value=61 Score=32.62 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=33.9
Q ss_pred ccchHHhhcCCCCCeEEEEeCCCCChhHHHHHHHHHhcCCCc
Q 022723 70 HIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNA 111 (293)
Q Consensus 70 ~~ddE~~~~~~~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns 111 (293)
+.++||...|-..|||||+..-+ .....+++-|..++|..
T Consensus 25 ~~~~~~RDQGftRPkVLIL~P~R--~~A~~~V~~Li~l~~~~ 64 (442)
T PF06862_consen 25 DDEDEFRDQGFTRPKVLILLPFR--NSALRIVETLISLLPPG 64 (442)
T ss_pred cccchhhccCCCCceEEEEcccH--HHHHHHHHHHHHHcCcc
Confidence 34578988999999999998765 57899999999999873
No 31
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=27.41 E-value=3e+02 Score=21.40 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=40.9
Q ss_pred CCCCCeEE-EEeC-CCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCC
Q 022723 79 TERDPKIL-LTTS-RDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPF 156 (293)
Q Consensus 79 ~~~~pkvl-ITtS-r~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~ 156 (293)
....|=.| +.+. ...|..+++|++|+..+=|.-......... ....+.+.... +..++++.-+|.
T Consensus 16 ~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~--~~~gIrF~GiP~ 82 (94)
T cd02974 16 RLENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPG--EDTGIRFAGIPM 82 (94)
T ss_pred hCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCC--CcccEEEEecCC
Confidence 34556444 3443 367789999999999988754433221111 23445554322 456899999998
Q ss_pred CC
Q 022723 157 GP 158 (293)
Q Consensus 157 GP 158 (293)
|-
T Consensus 83 Gh 84 (94)
T cd02974 83 GH 84 (94)
T ss_pred ch
Confidence 84
No 32
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=24.16 E-value=2.9e+02 Score=20.08 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=44.7
Q ss_pred eEEEEeCCCCCh----hHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCe
Q 022723 84 KILLTTSRDPSA----PLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPT 159 (293)
Q Consensus 84 kvlITtSr~ps~----r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT 159 (293)
.|+|......+. ....++..|+.- .-...+.=.+.+++.-+..|...|+..++++++..-....+.+..+-.|..
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~-g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~~ 81 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLAN-GIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGES 81 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHC-CCEEEecCCCcCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEECCCCce
Confidence 456665433122 334455555542 112222113458888999999999999999997643345677777766644
No 33
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=23.05 E-value=1.9e+02 Score=22.99 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=29.1
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc
Q 022723 5 NIRLRREYLYRKSLEGKERLLYEKKRKIKEALQE 38 (293)
Q Consensus 5 ~~r~rr~~l~~k~~~~k~~~~~~~~~~~~~~~~~ 38 (293)
..+++|+.-.++++..|.+++.++-++++++.+.
T Consensus 6 ~Ek~~k~eElkrlK~lK~~Ei~~kl~kik~~~G~ 39 (101)
T PF05178_consen 6 EEKQEKEEELKRLKNLKRKEIEEKLEKIKEVAGL 39 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888999999999999999999988775
No 34
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=22.96 E-value=3e+02 Score=26.65 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=54.5
Q ss_pred CCeEEEEeCC-CCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeE
Q 022723 82 DPKILLTTSR-DPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTA 160 (293)
Q Consensus 82 ~pkvlITtSr-~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~ 160 (293)
...|+|+... ..-......++.|+.-=-.+.... ...++++-...|...|+..++++.+..-..+.+.|..+..|...
T Consensus 318 ~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~-~~~~~~~~~~~a~~~gi~~~viig~~e~~~~~v~vr~~~~~~~~ 396 (412)
T PRK00037 318 PVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDY-GGRKLKKQFKYADKSGARFVLILGEDELANGTVTVKDLRTGEQQ 396 (412)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeC-CCCCHHHHHHHHHHcCCCEEEEEChhHHhCCeEEEEECCCCceE
Confidence 3578887633 222345667777776321222222 34578889999999999999999986544567888888888654
Q ss_pred EEEEe
Q 022723 161 YFGLL 165 (293)
Q Consensus 161 ~F~I~ 165 (293)
...+.
T Consensus 397 ~v~~~ 401 (412)
T PRK00037 397 TVPLD 401 (412)
T ss_pred EeeHH
Confidence 44433
No 35
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=22.05 E-value=4.9e+02 Score=25.46 Aligned_cols=77 Identities=8% Similarity=0.133 Sum_probs=50.6
Q ss_pred CeEEEEeCCCCChhHHHHHHHHHh-cCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEE
Q 022723 83 PKILLTTSRDPSAPLTQFVKELKF-VFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAY 161 (293)
Q Consensus 83 pkvlITtSr~ps~r~r~f~kdL~~-l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~ 161 (293)
+.|+|.+-. ........+++|+. .==.+.... ...++++-++.|...|+..++++++....-..+.|-.+-.|-...
T Consensus 339 ~dvlI~~~~-~~~~a~~ia~~Lr~~~Gi~ve~~~-~~~~l~~~i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~~ 416 (423)
T PRK12420 339 ADVFIIPLG-TELQCLQIAQQLRSTTGLKVELEL-AGRKLKKALNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVK 416 (423)
T ss_pred ceEEEEEcC-CHHHHHHHHHHHHhhcCCeEEEec-CCcCHHHHHHHHHHcCCCEEEEEChhHHhcCeEEEEECCCCceee
Confidence 467887743 33457778888876 311222222 345788999999999999999999864333456666666664433
No 36
>KOG3112 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.81 E-value=86 Score=28.68 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEE
Q 022723 121 ISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYF 162 (293)
Q Consensus 121 lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F 162 (293)
-++|++++...|+.++||++...+ .......+..||-+|.
T Consensus 102 ~e~l~~~~kSSG~~~VIVLSss~~--~~~~~L~~srgP~~Y~ 141 (262)
T KOG3112|consen 102 QEELVELLKSSGARRVIVLSSSFG--FEKRVLEESRGPWAYR 141 (262)
T ss_pred HHHHHHHHHhcCCceEEEEecchH--HHhhhhhhccCCeeEE
Confidence 357899999999999999998764 3455666778887554
No 37
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=20.42 E-value=1.5e+02 Score=25.11 Aligned_cols=37 Identities=14% Similarity=0.318 Sum_probs=28.7
Q ss_pred cCCCcEEeccCCc-----cHHHHHHHhhhCCCceEEEEEeec
Q 022723 107 VFPNAQRMNRGGQ-----VISEIIETCRAHEFTDVVLVHEHR 143 (293)
Q Consensus 107 l~Pns~~~~R~~~-----~lkdlv~~a~~~~~t~lii~~e~k 143 (293)
++|...|..-... .|.+.++.....||.|+++++.+.
T Consensus 54 l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~ 95 (142)
T PF10673_consen 54 LFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDS 95 (142)
T ss_pred ecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCc
Confidence 3588888765322 367778888999999999999875
Done!