Query 022723
Match_columns 293
No_of_seqs 227 out of 723
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 100.0 2.1E-36 7E-41 270.4 18.8 173 69-258 21-205 (217)
2 1w94_A MIL, probable BRIX-doma 99.9 4.8E-24 1.6E-28 181.6 14.6 152 84-260 1-152 (156)
3 4g85_A Histidine-tRNA ligase, 20.1 1.7E+02 0.0057 28.1 6.3 83 83-165 420-503 (517)
4 4g84_A Histidine--tRNA ligase, 18.6 1.1E+02 0.0039 28.5 4.7 83 83-165 367-450 (464)
5 1h4v_B Histidyl-tRNA synthetas 15.6 3.2E+02 0.011 25.0 7.0 74 84-159 330-404 (421)
6 3f6c_A Positive transcription 13.7 3.6E+02 0.012 19.1 5.7 57 82-138 46-102 (134)
7 3lc0_A Histidyl-tRNA synthetas 13.1 2.1E+02 0.0072 27.1 5.0 80 83-163 362-442 (456)
8 3fio_A A cystathionine beta-sy 13.0 2E+02 0.0067 18.5 3.6 25 117-141 7-31 (70)
9 1wu7_A Histidyl-tRNA synthetas 12.2 5E+02 0.017 23.9 7.3 82 84-166 334-416 (434)
10 2yxb_A Coenzyme B12-dependent 11.8 5.6E+02 0.019 20.3 8.1 69 73-142 9-78 (161)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=100.00 E-value=2.1e-36 Score=270.37 Aligned_cols=173 Identities=19% Similarity=0.200 Sum_probs=140.4
Q ss_pred CccchHHhhcCCCCCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCce
Q 022723 69 SHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDG 148 (293)
Q Consensus 69 ~~~ddE~~~~~~~~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~ 148 (293)
++.+|||. +|..+||||||||++||+++++|++||+.+|||+.+++|++.+|++|++.|..++||++|||+|++++|++
T Consensus 21 ~~g~~~~~-~~~~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~Rgk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~ 99 (217)
T 2cxh_A 21 MLGGKGRP-SGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNPGI 99 (217)
T ss_dssp -------------CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEEETTEEEE
T ss_pred cccCcccc-cCCCCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeecCCcCHHHHHHHHHhCCCCEEEEEEecCCCCcE
Confidence 45568888 57889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCC---C-eEEEEEeeeEeccccccccccCC-CCCCCcEEEecCCCCchhHHHHHHHHhcCCCCCCCCC-----
Q 022723 149 LIICHLPFG---P-TAYFGLLNVVTRHDIKDRKSIGT-MPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTK----- 218 (293)
Q Consensus 149 L~I~~lP~G---P-T~~F~I~n~~l~~di~~~~~~g~-~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~p~~~~r----- 218 (293)
|||+|+|+| | |++|+|+|+++++||+++ |+ ...++|+|+ +||++++|.++++||++|||.|.++..
T Consensus 100 L~~~hlP~G~~~P~Ta~F~I~nv~l~~ei~~~---g~~~~~~rP~L~-~nF~t~~g~~i~~~f~~lFp~P~~~~~~~~~~ 175 (217)
T 2cxh_A 100 IRVYAVEGPERPDNIVSFIVKGVSLSRERRWG---LPSLRGGEVLVA-RPLDSGVAVEFADAFVIAFHARLKPPEAAGYV 175 (217)
T ss_dssp EEEEECCSSSCCEEEEEEEEEEEECHHHHTCC---CCCCCSCCEEEE-EESSSSTHHHHHHHHHHHHCCBSSCCSSSCEE
T ss_pred EEEEECCCCCCCCcEEEEEEeeEEehhhhccC---CCccCCCCceEE-eeecCchHHHHHHHHHHHcCCCCCChhhhccc
Confidence 999999999 9 999999999999999988 75 467999999 999999999999999999999875543
Q ss_pred --eEEEEEecCCeEEEEEeeeeecCCCCcceeeeecceeEEE
Q 022723 219 --RIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELR 258 (293)
Q Consensus 219 --RVv~F~n~~d~I~fRhy~y~~~~~~~~v~L~EiGPRftLk 258 (293)
-++.+ ..+...+.-| .. ...+||.+-.+
T Consensus 176 ~d~~~~i--~~~~~~v~f~---~~-------~~~~Gp~i~i~ 205 (217)
T 2cxh_A 176 EAVIESL--DARTVAVTFR---YG-------GAPVGPMLRLG 205 (217)
T ss_dssp EEEEEEE--ETTEEEEEEE---CS-------SSEEEEEEEEE
T ss_pred ccEEEEE--cCCcEEEEEe---cC-------CCccCcEEEEc
Confidence 23344 3443333332 22 25789876555
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=99.91 E-value=4.8e-24 Score=181.65 Aligned_cols=152 Identities=19% Similarity=0.287 Sum_probs=119.9
Q ss_pred eEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEEE
Q 022723 84 KILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFG 163 (293)
Q Consensus 84 kvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F~ 163 (293)
|++||||++||+++++|+++|..++ |+.+++||+.+++++++.|... ++||+|++|+|++|.|+|+|+|||++|+
T Consensus 1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~~f~ 75 (156)
T 1w94_A 1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERGYIL 75 (156)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHHH-TCEECCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-CCEEEeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEEEEE
Confidence 6899999999999999999999999 9999999999999999998543 9999999999999999999999999999
Q ss_pred EeeeEeccccccccccCCCCCCCcEEEecCCCCchhHHHHHHHHhcCCCCCCCCCeEEEEEecCCeEEEEEeeeeecCCC
Q 022723 164 LLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGP 243 (293)
Q Consensus 164 I~n~~l~~di~~~~~~g~~s~~~P~LI~nnF~t~lg~~i~~~l~~lFp~p~~~~rRVv~F~n~~d~I~fRhy~y~~~~~~ 243 (293)
+ |+++++|++.. . |..|...+.++.+..+.++|. ||..+..+++|++|..++++++.=.+ |...|
T Consensus 76 ~-nv~l~~~~~~~------~---~~~v~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~i~f-~~~~~-- 140 (156)
T 1w94_A 76 F-NPSFEMKKPEL------A---DKAVRVSSCPPGSEGLCNLMG--LEVDESSSRDAWSIRTDEEYAWVMEL-MDARG-- 140 (156)
T ss_dssp E-EEEECSSCCCC------S---SCCCEESCCCTTCHHHHHHHT--CEECCSCCTTEEEEECCSSSSEEEEE-ECTTS--
T ss_pred E-ceEEcccCccc------C---CceEEEecCChhHHHHHHHHC--CCccCCCCceEEEEEeCCCcEEEEEE-EcCCC--
Confidence 8 99999999643 1 333555567777766766665 34445566789999866666432221 22223
Q ss_pred CcceeeeecceeEEEEE
Q 022723 244 KSLELKEIGPRFELRLY 260 (293)
Q Consensus 244 ~~v~L~EiGPRftLkL~ 260 (293)
..+||++-.+=+
T Consensus 141 -----~~~Gp~i~ik~~ 152 (156)
T 1w94_A 141 -----TPAGFKLLIRDF 152 (156)
T ss_dssp -----SEEEEEEEEEEE
T ss_pred -----CccCCEEEEEEe
Confidence 478988766533
No 3
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=20.11 E-value=1.7e+02 Score=28.10 Aligned_cols=83 Identities=10% Similarity=0.056 Sum_probs=58.7
Q ss_pred CeEEEEeCCC-CChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEE
Q 022723 83 PKILLTTSRD-PSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAY 161 (293)
Q Consensus 83 pkvlITtSr~-ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~ 161 (293)
+.|+|+.... .-.....++.+|+.-=-.+.....++.+++.-+..|...|+..+||+++..-....+.|-++-.|-...
T Consensus 420 ~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~ 499 (517)
T 4g85_A 420 TQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVD 499 (517)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEE
Confidence 4577776543 334567889999986435555445566788889999999999999999874334567787888886554
Q ss_pred EEEe
Q 022723 162 FGLL 165 (293)
Q Consensus 162 F~I~ 165 (293)
..+.
T Consensus 500 v~~~ 503 (517)
T 4g85_A 500 VRRE 503 (517)
T ss_dssp EEHH
T ss_pred eeHH
Confidence 4443
No 4
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=18.64 E-value=1.1e+02 Score=28.48 Aligned_cols=83 Identities=10% Similarity=0.056 Sum_probs=57.6
Q ss_pred CeEEEEeCCC-CChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEE
Q 022723 83 PKILLTTSRD-PSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAY 161 (293)
Q Consensus 83 pkvlITtSr~-ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~ 161 (293)
+.|+|+.... .-.....++.+|+.-=-.+.....++.+++.-+..|...|+..+||+.+..-....+.|-++-.|=...
T Consensus 367 ~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~ 446 (464)
T 4g84_A 367 TQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVD 446 (464)
T ss_dssp CCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEE
Confidence 3577776543 334567889999886334444445566788888999999999999999874334567787888886554
Q ss_pred EEEe
Q 022723 162 FGLL 165 (293)
Q Consensus 162 F~I~ 165 (293)
..+.
T Consensus 447 v~~~ 450 (464)
T 4g84_A 447 VRRE 450 (464)
T ss_dssp EEGG
T ss_pred eeHH
Confidence 4443
No 5
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=15.56 E-value=3.2e+02 Score=24.97 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=48.6
Q ss_pred eEEEEeCC-CCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCe
Q 022723 84 KILLTTSR-DPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPT 159 (293)
Q Consensus 84 kvlITtSr-~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT 159 (293)
.|+|+... ........++..|+.- -.+....+ ..+++.-...|...|+..+|++++..-....+.|-.+-.|-.
T Consensus 330 ~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~-~~~~~~~~~~a~~~g~p~~iivG~~e~~~~~v~vk~~~~~~~ 404 (421)
T 1h4v_B 330 DLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALA-PRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQ 404 (421)
T ss_pred eEEEEECChHHHHHHHHHHHHHHhc-CEEEEecC-CCCHHHHHHHHHhCCCCEEEEECchHhhcCcEEEEECCCCCc
Confidence 67776543 3334556777888775 23333344 357888899999999999999987643334555656655543
No 6
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=13.73 E-value=3.6e+02 Score=19.12 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=33.6
Q ss_pred CCeEEEEeCCCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEE
Q 022723 82 DPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVL 138 (293)
Q Consensus 82 ~pkvlITtSr~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii 138 (293)
.|-++|+--.-|......+++.|+...|+...+-=....-.+....|...|+.+++.
T Consensus 46 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVS 102 (134)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEE
T ss_pred CCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEe
Confidence 478888877777777888888888877765433211111222334455566665543
No 7
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=13.09 E-value=2.1e+02 Score=27.13 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=49.4
Q ss_pred CeEEEEeCC-CCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEE
Q 022723 83 PKILLTTSR-DPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAY 161 (293)
Q Consensus 83 pkvlITtSr-~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~ 161 (293)
+.++|+... ........++..|+.-=-.+..... ..+++.-...|...|+..++++.++.-....+.|-++-.|-...
T Consensus 362 ~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~-~~slkkq~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~ 440 (456)
T 3lc0_A 362 VDDVVIPFDESMRPHALAVLRRLRDAGRSADIILD-KKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKE 440 (456)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCS-CCCHHHHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC------
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecC-CCCHHHHHHHHHHcCCCEEEEECCchhcCCeEEEEECCCCCeEE
Confidence 446666543 3335778899999986323333332 34599999999999999999999874223457777777775433
Q ss_pred EE
Q 022723 162 FG 163 (293)
Q Consensus 162 F~ 163 (293)
..
T Consensus 441 ~~ 442 (456)
T 3lc0_A 441 EG 442 (456)
T ss_dssp --
T ss_pred ec
Confidence 33
No 8
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=13.00 E-value=2e+02 Score=18.48 Aligned_cols=25 Identities=4% Similarity=0.119 Sum_probs=20.9
Q ss_pred CCccHHHHHHHhhhCCCceEEEEEe
Q 022723 117 GGQVISEIIETCRAHEFTDVVLVHE 141 (293)
Q Consensus 117 ~~~~lkdlv~~a~~~~~t~lii~~e 141 (293)
...++.+.++.....+++.+.|+.+
T Consensus 7 ~~~~~~~a~~~m~~~~~~~~pV~d~ 31 (70)
T 3fio_A 7 PKDTVDRVAKILSRNKAGSAVVMEG 31 (70)
T ss_dssp TTCBHHHHHHHHHHTTCSEEEEEET
T ss_pred CCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 4567889999999999999988875
No 9
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=12.15 E-value=5e+02 Score=23.88 Aligned_cols=82 Identities=13% Similarity=0.057 Sum_probs=54.3
Q ss_pred eEEEEeC-CCCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEeecCCCceEEEeeCCCCCeEEE
Q 022723 84 KILLTTS-RDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYF 162 (293)
Q Consensus 84 kvlITtS-r~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~k~~p~~L~I~~lP~GPT~~F 162 (293)
.|+|+.- .........++..|+.-=-.+....+ ..+++.-+..|...|+..+|++++..-.-..+.|-.+-.|-....
T Consensus 334 ~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~-~~~~~~~~~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v 412 (434)
T 1wu7_A 334 SVYICRVGKINSSIMNEYSRKLRERGMNVTVEIM-ERGLSAQLKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENV 412 (434)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCS-CCCHHHHHHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEE
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecC-CCCHHHHHHHHHHCCCCEEEEECchhhhcCeEEEEECCCCCeEEE
Confidence 6776653 33445667888888864213333334 357888999999999999999997632234677777877865554
Q ss_pred EEee
Q 022723 163 GLLN 166 (293)
Q Consensus 163 ~I~n 166 (293)
.+.+
T Consensus 413 ~~~e 416 (434)
T 1wu7_A 413 GLDS 416 (434)
T ss_dssp EGGG
T ss_pred cHHH
Confidence 4443
No 10
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=11.83 E-value=5.6e+02 Score=20.27 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=40.4
Q ss_pred hHHhhcCCCCCeEEEEeCC-CCChhHHHHHHHHHhcCCCcEEeccCCccHHHHHHHhhhCCCceEEEEEee
Q 022723 73 DEYANATERDPKILLTTSR-DPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEH 142 (293)
Q Consensus 73 dE~~~~~~~~pkvlITtSr-~ps~r~r~f~kdL~~l~Pns~~~~R~~~~lkdlv~~a~~~~~t~lii~~e~ 142 (293)
+-|.......|+|++.|-. ..+..-..++..+...--.-....=...+..++++.+...+.. +|.++..
T Consensus 9 ~~~~~~~~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~d-iV~lS~~ 78 (161)
T 2yxb_A 9 ERVLGTPRRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVD-VIGVSIL 78 (161)
T ss_dssp -------CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCS-EEEEEES
T ss_pred HHHHhhcCCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCC-EEEEEee
Confidence 3444443467999998854 4555667777777665422223333467899999999988754 4444443
Done!