Query 022724
Match_columns 293
No_of_seqs 178 out of 1802
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 3.5E-51 7.5E-56 329.0 19.9 283 10-292 4-286 (400)
2 KOG0330 ATP-dependent RNA heli 100.0 9.6E-50 2.1E-54 333.3 21.2 263 29-292 57-320 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 7.1E-49 1.5E-53 346.7 23.5 258 34-292 92-361 (519)
4 COG0513 SrmB Superfamily II DN 100.0 3.8E-47 8.2E-52 347.3 30.7 260 33-292 29-293 (513)
5 PTZ00110 helicase; Provisional 100.0 5.3E-46 1.1E-50 342.7 31.0 268 24-292 121-397 (545)
6 PRK04837 ATP-dependent RNA hel 100.0 2E-45 4.3E-50 331.5 31.4 261 31-292 6-275 (423)
7 PRK11776 ATP-dependent RNA hel 100.0 2.4E-45 5.2E-50 334.3 30.9 259 32-292 3-262 (460)
8 PLN00206 DEAD-box ATP-dependen 100.0 5.5E-45 1.2E-49 334.9 31.4 269 22-292 110-387 (518)
9 PRK10590 ATP-dependent RNA hel 100.0 5.6E-45 1.2E-49 330.8 30.1 258 34-292 2-265 (456)
10 PRK11634 ATP-dependent RNA hel 100.0 6.4E-45 1.4E-49 338.6 30.7 260 32-292 5-265 (629)
11 PRK04537 ATP-dependent RNA hel 100.0 1.1E-44 2.4E-49 335.0 30.0 259 33-292 9-277 (572)
12 PRK11192 ATP-dependent RNA hel 100.0 8.8E-44 1.9E-48 322.1 31.9 259 34-292 2-265 (434)
13 KOG0338 ATP-dependent RNA heli 100.0 3.7E-45 8.1E-50 315.0 19.0 259 32-290 180-444 (691)
14 KOG0326 ATP-dependent RNA heli 100.0 3.9E-45 8.5E-50 298.7 13.3 258 32-291 84-341 (459)
15 KOG0346 RNA helicase [RNA proc 100.0 5.5E-44 1.2E-48 302.9 20.7 259 33-292 19-288 (569)
16 KOG0345 ATP-dependent RNA heli 100.0 3.4E-43 7.3E-48 300.4 24.6 260 33-293 4-276 (567)
17 PRK01297 ATP-dependent RNA hel 100.0 2.3E-42 5E-47 315.6 31.9 261 31-292 85-355 (475)
18 PTZ00424 helicase 45; Provisio 100.0 2.6E-42 5.6E-47 309.9 31.6 263 30-292 25-287 (401)
19 KOG0343 RNA Helicase [RNA proc 100.0 4.9E-43 1.1E-47 304.4 20.6 261 30-292 66-333 (758)
20 KOG0333 U5 snRNP-like RNA heli 100.0 2.3E-42 5.1E-47 298.6 23.1 280 13-293 225-538 (673)
21 KOG0340 ATP-dependent RNA heli 100.0 1E-42 2.2E-47 288.2 19.8 261 31-292 5-274 (442)
22 KOG0335 ATP-dependent RNA heli 100.0 1.6E-42 3.5E-47 301.7 20.1 280 12-292 53-357 (482)
23 KOG0339 ATP-dependent RNA heli 100.0 1.2E-41 2.6E-46 293.2 23.0 271 22-292 212-488 (731)
24 KOG0342 ATP-dependent RNA heli 100.0 2.5E-41 5.5E-46 290.5 23.3 262 30-292 79-350 (543)
25 KOG0336 ATP-dependent RNA heli 100.0 1.6E-41 3.4E-46 285.9 20.0 263 28-292 214-485 (629)
26 KOG0332 ATP-dependent RNA heli 100.0 3.7E-41 8E-46 280.5 16.0 283 3-292 64-350 (477)
27 KOG0327 Translation initiation 100.0 2.6E-40 5.6E-45 277.0 17.2 261 29-292 22-283 (397)
28 KOG0348 ATP-dependent RNA heli 100.0 1.2E-39 2.7E-44 282.3 19.4 270 22-292 125-445 (708)
29 KOG0334 RNA helicase [RNA proc 100.0 1.2E-39 2.5E-44 302.4 19.6 272 21-292 353-633 (997)
30 KOG0341 DEAD-box protein abstr 100.0 4E-41 8.6E-46 281.8 7.9 270 21-292 158-441 (610)
31 KOG0337 ATP-dependent RNA heli 100.0 3E-39 6.6E-44 272.8 16.9 260 32-292 20-281 (529)
32 KOG0347 RNA helicase [RNA proc 100.0 5.8E-39 1.3E-43 279.0 12.0 265 26-292 174-483 (731)
33 KOG4284 DEAD box protein [Tran 100.0 4.4E-38 9.6E-43 277.9 15.4 263 30-293 22-293 (980)
34 cd00268 DEADc DEAD-box helicas 100.0 5.6E-36 1.2E-40 244.4 24.6 200 35-234 1-202 (203)
35 TIGR03817 DECH_helic helicase/ 100.0 6.2E-36 1.3E-40 283.6 28.6 244 40-292 21-291 (742)
36 KOG0329 ATP-dependent RNA heli 100.0 4.6E-37 1E-41 244.5 14.0 252 32-284 41-295 (387)
37 PRK02362 ski2-like helicase; P 100.0 3.7E-35 7.9E-40 280.5 23.8 248 34-292 2-263 (737)
38 PRK00254 ski2-like helicase; P 100.0 1.1E-34 2.5E-39 276.4 24.1 245 34-292 2-258 (720)
39 KOG0350 DEAD-box ATP-dependent 100.0 2.7E-34 5.8E-39 247.5 18.9 260 32-292 126-449 (620)
40 COG1201 Lhr Lhr-like helicases 100.0 1E-33 2.2E-38 263.7 21.7 246 40-292 8-273 (814)
41 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.6E-32 5.6E-37 255.6 25.3 237 46-292 6-292 (844)
42 PRK13767 ATP-dependent helicas 100.0 2.3E-32 5E-37 263.9 24.5 248 40-292 18-304 (876)
43 PRK01172 ski2-like helicase; P 100.0 1.9E-32 4E-37 260.1 21.9 245 34-292 2-256 (674)
44 KOG0344 ATP-dependent RNA heli 100.0 8.7E-33 1.9E-37 242.9 15.7 272 21-292 120-407 (593)
45 PRK09401 reverse gyrase; Revie 100.0 2.2E-30 4.7E-35 253.9 26.6 235 45-292 70-351 (1176)
46 PF00270 DEAD: DEAD/DEAH box h 100.0 1.3E-30 2.9E-35 206.4 19.3 165 57-222 1-168 (169)
47 TIGR00614 recQ_fam ATP-depende 100.0 3.2E-30 7E-35 235.0 23.8 227 50-292 6-246 (470)
48 PLN03137 ATP-dependent DNA hel 100.0 9E-30 2E-34 242.3 26.3 244 34-292 436-700 (1195)
49 PRK11057 ATP-dependent DNA hel 100.0 3.2E-29 6.9E-34 234.4 25.5 236 40-292 9-256 (607)
50 COG1204 Superfamily II helicas 100.0 6.5E-30 1.4E-34 240.7 19.1 247 39-292 15-273 (766)
51 TIGR01389 recQ ATP-dependent D 100.0 4E-29 8.7E-34 234.0 24.1 229 47-292 4-244 (591)
52 PRK14701 reverse gyrase; Provi 100.0 6.6E-29 1.4E-33 248.4 25.4 239 43-292 67-353 (1638)
53 COG1205 Distinct helicase fami 100.0 1.8E-28 3.9E-33 233.9 25.1 245 41-289 56-323 (851)
54 TIGR00580 mfd transcription-re 100.0 6.7E-28 1.5E-32 231.4 26.8 234 40-292 436-680 (926)
55 COG1202 Superfamily II helicas 100.0 7.5E-29 1.6E-33 217.4 18.3 251 33-292 194-460 (830)
56 PRK10689 transcription-repair 100.0 6.6E-28 1.4E-32 236.0 26.7 231 43-292 589-829 (1147)
57 TIGR01054 rgy reverse gyrase. 100.0 5E-28 1.1E-32 237.6 25.7 238 42-292 65-349 (1171)
58 PRK09751 putative ATP-dependen 100.0 2E-27 4.4E-32 234.3 23.0 215 75-292 1-264 (1490)
59 TIGR03158 cas3_cyano CRISPR-as 99.9 6.7E-26 1.5E-30 199.4 24.0 226 59-292 1-292 (357)
60 KOG0952 DNA/RNA helicase MER3/ 99.9 4.3E-27 9.3E-32 218.2 17.1 238 50-292 105-369 (1230)
61 PRK10917 ATP-dependent DNA hel 99.9 9.4E-26 2E-30 213.3 26.3 225 42-284 248-483 (681)
62 PHA02653 RNA helicase NPH-II; 99.9 1.7E-25 3.7E-30 208.3 21.5 223 57-292 166-415 (675)
63 TIGR00643 recG ATP-dependent D 99.9 6.1E-25 1.3E-29 206.5 25.3 223 44-284 225-460 (630)
64 TIGR01587 cas3_core CRISPR-ass 99.9 2.1E-25 4.7E-30 197.4 17.3 215 72-292 1-242 (358)
65 PRK11664 ATP-dependent RNA hel 99.9 1.1E-23 2.4E-28 200.9 23.2 216 59-292 9-232 (812)
66 TIGR01970 DEAH_box_HrpB ATP-de 99.9 3.7E-23 8E-28 197.0 24.5 217 59-292 6-229 (819)
67 KOG0349 Putative DEAD-box RNA 99.9 1.2E-24 2.6E-29 185.4 11.3 193 100-292 285-525 (725)
68 COG0514 RecQ Superfamily II DN 99.9 6.7E-24 1.5E-28 191.7 16.6 232 46-292 7-250 (590)
69 PHA02558 uvsW UvsW helicase; P 99.9 1.3E-23 2.7E-28 192.9 18.4 151 53-219 112-262 (501)
70 smart00487 DEXDc DEAD-like hel 99.9 2.5E-22 5.5E-27 162.4 22.1 187 51-238 4-192 (201)
71 PRK13766 Hef nuclease; Provisi 99.9 2.7E-22 5.8E-27 193.9 23.0 162 52-217 12-173 (773)
72 PRK12898 secA preprotein trans 99.9 4.1E-22 8.9E-27 183.4 19.0 231 51-292 100-493 (656)
73 KOG0951 RNA helicase BRR2, DEA 99.9 3.1E-22 6.8E-27 188.6 16.4 247 39-292 295-566 (1674)
74 COG4581 Superfamily II RNA hel 99.9 1.4E-21 3.1E-26 185.5 20.1 178 47-236 112-292 (1041)
75 COG1111 MPH1 ERCC4-like helica 99.9 5.2E-21 1.1E-25 166.7 21.5 167 53-223 13-179 (542)
76 PRK12899 secA preprotein trans 99.9 7.4E-22 1.6E-26 185.2 15.4 148 36-188 65-228 (970)
77 PRK09694 helicase Cas3; Provis 99.9 9.5E-21 2.1E-25 180.8 21.4 238 53-292 284-580 (878)
78 TIGR03714 secA2 accessory Sec 99.9 1.7E-20 3.8E-25 174.8 20.7 132 51-188 67-208 (762)
79 PRK05580 primosome assembly pr 99.9 7.2E-20 1.6E-24 172.9 23.8 156 55-224 144-312 (679)
80 PRK09200 preprotein translocas 99.9 3.6E-20 7.9E-25 174.1 20.6 131 51-188 75-212 (790)
81 KOG0353 ATP-dependent DNA heli 99.9 1.9E-20 4.2E-25 157.7 15.9 249 33-292 71-337 (695)
82 TIGR00963 secA preprotein tran 99.9 5.6E-20 1.2E-24 170.5 20.0 130 51-188 53-189 (745)
83 KOG0354 DEAD-box like helicase 99.8 1.9E-20 4E-25 171.8 14.5 167 52-222 59-227 (746)
84 KOG0351 ATP-dependent DNA heli 99.8 4.9E-20 1.1E-24 175.7 17.5 235 44-292 252-505 (941)
85 KOG0947 Cytoplasmic exosomal R 99.8 9.8E-20 2.1E-24 168.2 17.4 161 51-227 294-454 (1248)
86 KOG0352 ATP-dependent DNA heli 99.8 3.1E-20 6.6E-25 158.4 12.9 237 43-292 6-275 (641)
87 PRK11131 ATP-dependent RNA hel 99.8 8.8E-19 1.9E-23 171.1 21.4 215 57-292 76-306 (1294)
88 cd00046 DEXDc DEAD-like helica 99.8 1.4E-18 3.1E-23 132.5 17.0 144 71-216 1-144 (144)
89 TIGR00603 rad25 DNA repair hel 99.8 7E-19 1.5E-23 164.0 17.9 221 55-292 255-516 (732)
90 KOG0948 Nuclear exosomal RNA h 99.8 3.7E-19 7.9E-24 160.9 13.8 168 55-236 129-298 (1041)
91 PRK13104 secA preprotein trans 99.8 2.8E-18 6E-23 161.5 19.3 127 55-188 82-215 (896)
92 COG1061 SSL2 DNA or RNA helica 99.8 1.9E-18 4E-23 156.0 15.8 147 54-218 35-185 (442)
93 PRK12904 preprotein translocas 99.8 7.6E-18 1.6E-22 158.3 19.5 129 51-188 78-214 (830)
94 TIGR00595 priA primosomal prot 99.8 2E-17 4.2E-22 151.3 20.3 136 74-223 1-146 (505)
95 COG1200 RecG RecG-like helicas 99.8 1.1E-16 2.4E-21 145.3 20.4 231 39-287 246-488 (677)
96 PF04851 ResIII: Type III rest 99.7 1.8E-17 3.9E-22 132.7 12.2 152 55-217 3-183 (184)
97 KOG0950 DNA polymerase theta/e 99.7 1.3E-17 2.8E-22 154.9 12.4 174 40-219 207-390 (1008)
98 TIGR01967 DEAH_box_HrpA ATP-de 99.7 4.8E-16 1E-20 152.6 23.4 226 51-292 60-299 (1283)
99 PRK11448 hsdR type I restricti 99.7 3.8E-17 8.3E-22 160.4 14.8 159 55-218 413-596 (1123)
100 COG1197 Mfd Transcription-repa 99.7 7E-16 1.5E-20 147.4 21.4 235 39-292 578-823 (1139)
101 COG1110 Reverse gyrase [DNA re 99.7 4.3E-16 9.4E-21 145.7 17.9 232 46-292 73-358 (1187)
102 COG4098 comFA Superfamily II D 99.7 3E-15 6.5E-20 125.0 19.0 216 55-292 97-325 (441)
103 COG1203 CRISPR-associated heli 99.7 9.6E-16 2.1E-20 146.4 15.5 237 55-292 195-460 (733)
104 PRK13107 preprotein translocas 99.6 6.2E-15 1.3E-19 138.8 15.9 127 55-188 82-215 (908)
105 COG1198 PriA Primosomal protei 99.6 3.1E-14 6.8E-19 133.0 18.1 216 54-285 197-433 (730)
106 COG4096 HsdR Type I site-speci 99.6 2E-14 4.4E-19 132.6 15.4 149 55-219 165-323 (875)
107 TIGR00348 hsdR type I site-spe 99.6 6.2E-14 1.3E-18 132.7 16.9 152 55-217 238-403 (667)
108 COG1643 HrpA HrpA-like helicas 99.6 3.9E-13 8.4E-18 127.5 21.1 221 57-292 52-279 (845)
109 TIGR01407 dinG_rel DnaQ family 99.5 2.1E-13 4.5E-18 132.9 16.6 94 40-137 231-331 (850)
110 KOG0951 RNA helicase BRR2, DEA 99.5 1.4E-13 3E-18 131.1 13.9 224 53-292 1141-1379(1674)
111 KOG0949 Predicted helicase, DE 99.5 9.7E-14 2.1E-18 129.4 10.4 160 55-219 511-674 (1330)
112 PRK12906 secA preprotein trans 99.5 2.9E-12 6.4E-17 120.6 16.6 130 51-188 77-213 (796)
113 TIGR03117 cas_csf4 CRISPR-asso 99.4 2.8E-12 6.1E-17 119.0 14.8 61 64-125 10-70 (636)
114 PRK07246 bifunctional ATP-depe 99.4 3.2E-12 7E-17 123.3 15.4 83 51-138 242-329 (820)
115 KOG0920 ATP-dependent RNA heli 99.4 2.5E-11 5.4E-16 115.3 20.7 226 56-292 174-433 (924)
116 KOG0922 DEAH-box RNA helicase 99.4 3.5E-11 7.6E-16 109.0 20.5 220 57-292 53-278 (674)
117 PRK04914 ATP-dependent helicas 99.4 2.6E-11 5.7E-16 117.4 19.3 158 55-217 152-316 (956)
118 PF07652 Flavi_DEAD: Flaviviru 99.4 9.2E-13 2E-17 98.2 6.3 136 69-220 3-140 (148)
119 PRK12326 preprotein translocas 99.3 1.2E-10 2.6E-15 108.0 19.3 130 51-188 75-211 (764)
120 smart00488 DEXDc2 DEAD-like he 99.3 4.4E-11 9.5E-16 102.3 13.4 70 55-124 8-84 (289)
121 smart00489 DEXDc3 DEAD-like he 99.3 4.4E-11 9.5E-16 102.3 13.4 70 55-124 8-84 (289)
122 PF00176 SNF2_N: SNF2 family N 99.3 6.6E-11 1.4E-15 102.1 14.4 143 70-216 25-172 (299)
123 PRK08074 bifunctional ATP-depe 99.2 2.1E-10 4.5E-15 112.7 15.5 65 52-119 255-323 (928)
124 KOG0925 mRNA splicing factor A 99.2 2.2E-09 4.8E-14 94.1 19.1 237 32-292 24-273 (699)
125 PLN03142 Probable chromatin-re 99.2 6.9E-10 1.5E-14 108.2 16.8 153 55-216 169-329 (1033)
126 KOG0926 DEAH-box RNA helicase 99.2 2.7E-10 5.9E-15 105.0 12.7 217 61-292 262-501 (1172)
127 KOG0952 DNA/RNA helicase MER3/ 99.2 2.7E-12 5.9E-17 120.8 -0.6 228 53-288 925-1169(1230)
128 PRK14873 primosome assembly pr 99.1 1.5E-09 3.3E-14 102.1 14.8 138 74-224 164-311 (665)
129 TIGR02562 cas3_yersinia CRISPR 99.1 1.8E-09 3.9E-14 103.6 13.7 168 55-224 408-642 (1110)
130 KOG1123 RNA polymerase II tran 99.1 1.9E-10 4E-15 101.1 6.5 147 55-217 302-459 (776)
131 CHL00122 secA preprotein trans 99.1 4.6E-09 1E-13 99.4 15.2 130 51-188 73-209 (870)
132 PRK13103 secA preprotein trans 99.1 8.7E-10 1.9E-14 104.7 10.2 130 51-188 79-215 (913)
133 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.2E-08 2.5E-13 85.5 15.3 130 51-188 74-210 (266)
134 KOG0923 mRNA splicing factor A 99.0 1.9E-08 4.1E-13 91.4 16.7 220 56-291 266-492 (902)
135 PRK11747 dinG ATP-dependent DN 99.0 7.5E-09 1.6E-13 98.8 13.3 64 52-118 23-95 (697)
136 KOG0924 mRNA splicing factor A 99.0 4.1E-08 8.9E-13 89.5 17.1 218 56-290 357-581 (1042)
137 COG4889 Predicted helicase [Ge 98.9 7.3E-10 1.6E-14 103.1 4.9 149 33-188 140-317 (1518)
138 PF02399 Herpes_ori_bp: Origin 98.9 7.8E-08 1.7E-12 90.3 17.8 148 71-230 50-204 (824)
139 PRK12903 secA preprotein trans 98.9 9E-08 2E-12 90.6 17.3 130 51-188 75-211 (925)
140 COG1199 DinG Rad3-related DNA 98.8 3.1E-08 6.7E-13 94.7 11.6 73 49-123 9-85 (654)
141 PF02562 PhoH: PhoH-like prote 98.8 3.7E-08 8E-13 79.2 9.7 141 54-214 3-154 (205)
142 KOG0385 Chromatin remodeling c 98.8 1.3E-07 2.9E-12 87.3 13.7 152 55-216 167-327 (971)
143 PF13086 AAA_11: AAA domain; P 98.7 6.5E-08 1.4E-12 80.1 9.4 67 56-123 2-75 (236)
144 COG0610 Type I site-specific r 98.7 1.5E-07 3.2E-12 92.6 13.0 137 71-216 274-413 (962)
145 PRK15483 type III restriction- 98.7 3E-07 6.5E-12 88.7 14.5 143 71-218 60-240 (986)
146 PF13604 AAA_30: AAA domain; P 98.6 2.9E-07 6.3E-12 74.3 10.4 123 55-215 1-130 (196)
147 PRK12902 secA preprotein trans 98.6 2E-07 4.4E-12 88.5 10.3 130 51-188 82-218 (939)
148 KOG0389 SNF2 family DNA-depend 98.6 2.7E-07 5.9E-12 85.5 10.5 162 56-224 400-571 (941)
149 KOG4150 Predicted ATP-dependen 98.6 4.5E-07 9.8E-12 81.4 11.4 240 48-290 279-543 (1034)
150 KOG0387 Transcription-coupled 98.6 9E-07 2E-11 82.2 12.7 158 55-223 205-383 (923)
151 PRK10536 hypothetical protein; 98.6 2.7E-06 5.9E-11 70.5 13.7 142 51-212 55-209 (262)
152 KOG0390 DNA repair protein, SN 98.5 2.6E-06 5.5E-11 80.4 14.8 164 55-224 238-423 (776)
153 TIGR01447 recD exodeoxyribonuc 98.4 4.2E-06 9.2E-11 78.3 13.6 141 57-215 147-295 (586)
154 PF06862 DUF1253: Protein of u 98.4 3.9E-05 8.4E-10 68.7 18.0 192 100-292 36-320 (442)
155 PF13872 AAA_34: P-loop contai 98.4 4.1E-06 8.8E-11 70.7 11.2 173 37-223 25-227 (303)
156 PF12340 DUF3638: Protein of u 98.3 1.3E-05 2.8E-10 65.3 12.5 128 33-165 3-144 (229)
157 PRK10875 recD exonuclease V su 98.3 7.8E-06 1.7E-10 76.7 12.9 140 57-215 154-301 (615)
158 TIGR00604 rad3 DNA repair heli 98.3 2.7E-06 5.9E-11 81.9 9.5 74 52-125 7-84 (705)
159 TIGR01448 recD_rel helicase, p 98.3 1.6E-05 3.5E-10 76.4 14.1 126 54-215 322-452 (720)
160 PF09848 DUF2075: Uncharacteri 98.3 6.1E-06 1.3E-10 73.0 10.3 108 72-202 3-117 (352)
161 KOG0392 SNF2 family DNA-depend 98.3 6E-06 1.3E-10 80.2 10.4 168 55-230 975-1156(1549)
162 PF13245 AAA_19: Part of AAA d 98.2 8.7E-06 1.9E-10 54.9 7.1 51 70-121 10-62 (76)
163 KOG0384 Chromodomain-helicase 98.2 6.8E-06 1.5E-10 79.8 8.9 159 54-224 369-544 (1373)
164 KOG1802 RNA helicase nonsense 98.2 1.3E-05 2.8E-10 73.5 10.2 76 47-124 402-477 (935)
165 TIGR00376 DNA helicase, putati 98.2 2.3E-05 5.1E-10 74.3 12.4 66 55-123 157-223 (637)
166 KOG1000 Chromatin remodeling p 98.2 1.3E-05 2.9E-10 71.1 9.9 152 53-216 196-348 (689)
167 KOG1002 Nucleotide excision re 98.2 3E-05 6.6E-10 68.9 11.4 151 55-216 184-354 (791)
168 COG1875 NYN ribonuclease and A 98.1 3.8E-05 8.1E-10 66.1 10.4 144 50-213 223-385 (436)
169 TIGR02768 TraA_Ti Ti-type conj 98.0 0.00011 2.4E-09 71.0 14.2 121 55-213 352-474 (744)
170 COG3587 Restriction endonuclea 98.0 1.7E-05 3.7E-10 74.6 8.2 145 71-221 75-247 (985)
171 PRK13889 conjugal transfer rel 98.0 0.00011 2.4E-09 72.3 14.2 123 55-215 346-470 (988)
172 KOG4439 RNA polymerase II tran 98.0 1.7E-05 3.7E-10 73.1 7.8 132 55-188 325-476 (901)
173 PRK12900 secA preprotein trans 98.0 1.5E-05 3.3E-10 76.9 6.4 127 55-188 138-271 (1025)
174 KOG1803 DNA helicase [Replicat 98.0 2.9E-05 6.3E-10 70.6 7.7 64 55-121 185-249 (649)
175 KOG0391 SNF2 family DNA-depend 97.9 8.5E-05 1.9E-09 72.2 10.7 158 55-222 615-782 (1958)
176 PRK12723 flagellar biosynthesi 97.9 0.00044 9.6E-09 61.5 14.4 129 71-227 175-309 (388)
177 PF00580 UvrD-helicase: UvrD/R 97.9 4.4E-05 9.6E-10 66.1 7.9 122 56-185 1-125 (315)
178 KOG2340 Uncharacterized conser 97.8 0.0003 6.4E-09 63.3 12.0 176 54-230 215-493 (698)
179 PRK13826 Dtr system oriT relax 97.8 0.00052 1.1E-08 68.3 14.1 137 40-215 367-505 (1102)
180 PRK12901 secA preprotein trans 97.8 4.9E-05 1.1E-09 73.7 6.4 126 56-188 170-303 (1112)
181 PRK04296 thymidine kinase; Pro 97.7 0.00034 7.3E-09 56.3 9.9 110 70-215 2-114 (190)
182 PF14617 CMS1: U3-containing 9 97.7 0.00013 2.8E-09 60.6 7.1 87 99-186 124-212 (252)
183 cd00009 AAA The AAA+ (ATPases 97.7 0.00079 1.7E-08 50.9 11.1 17 70-86 19-35 (151)
184 KOG0989 Replication factor C, 97.7 0.0002 4.4E-09 60.3 8.2 55 172-227 126-183 (346)
185 PF13401 AAA_22: AAA domain; P 97.7 0.0003 6.4E-09 52.6 8.0 20 69-88 3-22 (131)
186 KOG1132 Helicase of the DEAD s 97.6 0.00053 1.1E-08 65.2 10.8 70 55-124 21-133 (945)
187 COG0556 UvrB Helicase subunit 97.6 0.00015 3.2E-09 65.3 6.7 73 55-133 12-89 (663)
188 smart00382 AAA ATPases associa 97.6 0.00028 6E-09 52.9 7.5 41 70-113 2-42 (148)
189 PRK08181 transposase; Validate 97.6 0.0008 1.7E-08 57.0 10.7 58 57-118 89-150 (269)
190 PRK06526 transposase; Provisio 97.5 0.00051 1.1E-08 57.7 8.5 21 68-88 96-116 (254)
191 PRK11889 flhF flagellar biosyn 97.4 0.0032 7E-08 55.7 12.2 128 71-227 242-374 (436)
192 PF05970 PIF1: PIF1-like helic 97.4 0.00062 1.3E-08 60.5 7.9 59 56-117 2-66 (364)
193 PRK10919 ATP-dependent DNA hel 97.4 0.00088 1.9E-08 64.3 9.2 69 55-125 2-71 (672)
194 KOG1805 DNA replication helica 97.4 0.0014 3E-08 63.0 10.2 135 39-188 657-809 (1100)
195 KOG0953 Mitochondrial RNA heli 97.4 0.00021 4.5E-09 64.5 4.5 102 70-192 191-292 (700)
196 COG1419 FlhF Flagellar GTP-bin 97.4 0.008 1.7E-07 53.1 14.0 130 70-228 203-336 (407)
197 PRK06921 hypothetical protein; 97.4 0.003 6.5E-08 53.5 11.2 45 70-117 117-161 (266)
198 KOG0388 SNF2 family DNA-depend 97.3 0.00076 1.6E-08 62.8 7.8 154 56-222 568-740 (1185)
199 PRK00149 dnaA chromosomal repl 97.3 0.0016 3.6E-08 59.6 10.2 46 71-118 149-194 (450)
200 PRK14722 flhF flagellar biosyn 97.3 0.0016 3.5E-08 57.5 9.6 129 70-227 137-269 (374)
201 cd01120 RecA-like_NTPases RecA 97.3 0.0041 8.9E-08 48.0 10.8 38 73-113 2-39 (165)
202 TIGR01075 uvrD DNA helicase II 97.3 0.0014 3E-08 63.7 9.4 71 54-126 3-74 (715)
203 KOG0921 Dosage compensation co 97.3 0.0017 3.6E-08 62.1 9.2 144 61-218 384-537 (1282)
204 PF00308 Bac_DnaA: Bacterial d 97.2 0.0012 2.6E-08 54.3 7.4 107 72-220 36-144 (219)
205 COG0553 HepA Superfamily II DN 97.2 0.0024 5.3E-08 63.3 10.9 158 54-216 337-510 (866)
206 PRK05642 DNA replication initi 97.2 0.0011 2.4E-08 55.1 7.2 44 175-218 97-141 (234)
207 PRK14974 cell division protein 97.2 0.009 1.9E-07 52.2 13.0 129 72-227 142-275 (336)
208 KOG0386 Chromatin remodeling c 97.2 0.001 2.2E-08 64.1 7.5 155 54-216 393-554 (1157)
209 TIGR02760 TraI_TIGR conjugativ 97.2 0.033 7.1E-07 59.6 19.2 206 55-291 429-645 (1960)
210 TIGR00362 DnaA chromosomal rep 97.2 0.0029 6.3E-08 57.1 10.2 37 71-108 137-173 (405)
211 PF00448 SRP54: SRP54-type pro 97.2 0.0025 5.3E-08 51.4 8.6 127 72-224 3-133 (196)
212 PF03354 Terminase_1: Phage Te 97.2 0.0018 3.9E-08 59.7 8.6 149 58-214 1-161 (477)
213 PRK11773 uvrD DNA-dependent he 97.1 0.0022 4.8E-08 62.2 9.2 70 55-126 9-79 (721)
214 PHA02533 17 large terminase pr 97.1 0.005 1.1E-07 57.3 11.0 148 55-216 59-210 (534)
215 PRK14088 dnaA chromosomal repl 97.1 0.0058 1.3E-07 55.7 11.2 38 71-109 131-168 (440)
216 PRK07952 DNA replication prote 97.1 0.0076 1.6E-07 50.3 11.0 104 71-217 100-205 (244)
217 PRK13709 conjugal transfer nic 97.1 0.0061 1.3E-07 63.6 12.2 63 55-118 967-1033(1747)
218 KOG1131 RNA polymerase II tran 97.1 0.0027 5.9E-08 57.2 8.4 71 52-122 13-88 (755)
219 PRK00411 cdc6 cell division co 97.1 0.0046 1E-07 55.6 10.3 36 71-107 56-91 (394)
220 PRK14087 dnaA chromosomal repl 97.1 0.0021 4.6E-08 58.7 8.0 49 71-121 142-190 (450)
221 PRK14712 conjugal transfer nic 97.1 0.0045 9.8E-08 63.8 11.0 64 55-119 835-902 (1623)
222 TIGR02785 addA_Gpos recombinat 97.1 0.0039 8.5E-08 63.9 10.6 122 56-186 2-126 (1232)
223 PRK11054 helD DNA helicase IV; 97.1 0.0032 6.9E-08 60.4 9.3 70 54-125 195-265 (684)
224 cd01124 KaiC KaiC is a circadi 97.1 0.0091 2E-07 47.5 10.7 48 73-124 2-49 (187)
225 COG1484 DnaC DNA replication p 97.1 0.0034 7.4E-08 52.8 8.4 67 52-122 80-153 (254)
226 PRK05703 flhF flagellar biosyn 97.1 0.021 4.5E-07 51.8 13.9 128 70-227 221-354 (424)
227 PRK05707 DNA polymerase III su 97.0 0.0067 1.4E-07 53.0 10.3 33 56-88 4-40 (328)
228 COG0653 SecA Preprotein transl 97.0 0.0032 6.9E-08 60.4 8.7 126 56-188 81-213 (822)
229 TIGR01547 phage_term_2 phage t 97.0 0.0028 6.1E-08 57.1 8.0 135 72-218 3-142 (396)
230 PRK06893 DNA replication initi 97.0 0.0027 5.9E-08 52.6 7.1 46 174-219 90-137 (229)
231 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0054 1.2E-07 50.5 8.9 20 69-88 37-56 (226)
232 PRK08116 hypothetical protein; 97.0 0.013 2.7E-07 49.8 11.2 44 72-119 116-159 (268)
233 PRK08727 hypothetical protein; 97.0 0.0047 1E-07 51.3 8.5 35 71-108 42-76 (233)
234 PRK12377 putative replication 97.0 0.013 2.9E-07 49.0 11.1 46 70-119 101-146 (248)
235 TIGR02881 spore_V_K stage V sp 97.0 0.011 2.3E-07 50.1 10.7 18 71-88 43-60 (261)
236 TIGR00631 uvrb excinuclease AB 97.0 0.0099 2.2E-07 56.8 11.6 67 55-127 9-80 (655)
237 TIGR01074 rep ATP-dependent DN 97.0 0.0057 1.2E-07 58.9 10.1 69 56-126 2-71 (664)
238 PRK13833 conjugal transfer pro 97.0 0.0039 8.5E-08 54.1 8.0 64 47-113 122-186 (323)
239 PF05621 TniB: Bacterial TniB 96.9 0.0039 8.6E-08 53.0 7.8 132 56-212 38-186 (302)
240 CHL00181 cbbX CbbX; Provisiona 96.9 0.017 3.6E-07 49.6 11.8 19 70-88 59-77 (287)
241 PRK06835 DNA replication prote 96.9 0.012 2.6E-07 51.4 10.8 46 69-118 182-227 (329)
242 TIGR01073 pcrA ATP-dependent D 96.9 0.0038 8.3E-08 60.7 8.5 70 54-125 3-73 (726)
243 PF05127 Helicase_RecD: Helica 96.9 0.0011 2.3E-08 52.3 3.8 124 74-217 1-124 (177)
244 PF13173 AAA_14: AAA domain 96.9 0.024 5.2E-07 42.3 10.9 38 175-215 61-98 (128)
245 PRK08084 DNA replication initi 96.9 0.0045 9.8E-08 51.5 7.4 37 70-109 45-81 (235)
246 TIGR02782 TrbB_P P-type conjug 96.9 0.0066 1.4E-07 52.4 8.6 66 45-113 108-174 (299)
247 cd01122 GP4d_helicase GP4d_hel 96.8 0.0091 2E-07 50.7 9.3 143 43-189 3-154 (271)
248 PRK11331 5-methylcytosine-spec 96.8 0.0055 1.2E-07 55.2 8.1 33 56-88 180-212 (459)
249 PRK14960 DNA polymerase III su 96.8 0.016 3.5E-07 54.7 11.4 39 174-213 117-155 (702)
250 PRK13894 conjugal transfer ATP 96.8 0.0053 1.2E-07 53.3 7.7 66 45-113 124-190 (319)
251 PRK12422 chromosomal replicati 96.8 0.013 2.9E-07 53.4 10.5 108 71-222 142-251 (445)
252 KOG0738 AAA+-type ATPase [Post 96.8 0.01 2.3E-07 51.9 9.1 56 31-86 181-261 (491)
253 PRK12402 replication factor C 96.8 0.023 4.9E-07 49.8 11.6 40 174-214 124-163 (337)
254 PRK14956 DNA polymerase III su 96.8 0.0063 1.4E-07 55.4 8.0 17 73-89 43-59 (484)
255 PF00004 AAA: ATPase family as 96.7 0.037 8.1E-07 41.0 11.1 17 175-191 58-74 (132)
256 PLN03025 replication factor C 96.7 0.024 5.2E-07 49.5 11.4 39 174-213 98-136 (319)
257 PRK06995 flhF flagellar biosyn 96.7 0.05 1.1E-06 49.9 13.6 21 70-90 256-276 (484)
258 PRK14086 dnaA chromosomal repl 96.7 0.016 3.5E-07 54.4 10.5 107 71-219 315-423 (617)
259 PRK14949 DNA polymerase III su 96.7 0.013 2.7E-07 57.2 10.0 38 174-212 118-155 (944)
260 COG1435 Tdk Thymidine kinase [ 96.7 0.023 5.1E-07 45.1 9.7 106 70-203 4-109 (201)
261 COG4626 Phage terminase-like p 96.7 0.019 4.1E-07 52.6 10.4 147 55-214 61-223 (546)
262 PF13177 DNA_pol3_delta2: DNA 96.7 0.014 3.1E-07 45.5 8.6 43 174-217 101-143 (162)
263 COG1444 Predicted P-loop ATPas 96.7 0.024 5.1E-07 54.2 11.3 157 40-218 199-358 (758)
264 TIGR02760 TraI_TIGR conjugativ 96.7 0.016 3.4E-07 62.0 11.2 63 54-118 1018-1085(1960)
265 TIGR02880 cbbX_cfxQ probable R 96.6 0.015 3.3E-07 49.8 9.3 18 70-87 58-75 (284)
266 KOG0741 AAA+-type ATPase [Post 96.6 0.02 4.4E-07 52.1 10.2 61 171-236 320-394 (744)
267 PHA03333 putative ATPase subun 96.6 0.059 1.3E-06 51.0 13.6 144 55-216 169-332 (752)
268 PRK08903 DnaA regulatory inact 96.6 0.014 3.1E-07 48.1 8.8 43 175-218 90-133 (227)
269 PRK14723 flhF flagellar biosyn 96.6 0.045 9.7E-07 52.8 13.0 128 71-227 186-317 (767)
270 TIGR00596 rad1 DNA repair prot 96.6 0.012 2.6E-07 57.3 9.3 87 152-238 8-100 (814)
271 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.014 3E-07 48.6 8.6 53 69-125 20-72 (237)
272 PHA03368 DNA packaging termina 96.6 0.023 5E-07 53.4 10.6 136 68-218 252-392 (738)
273 PRK14721 flhF flagellar biosyn 96.6 0.026 5.5E-07 50.9 10.6 130 70-227 191-323 (420)
274 PRK07003 DNA polymerase III su 96.6 0.014 3E-07 55.9 9.1 40 174-214 118-157 (830)
275 PRK14958 DNA polymerase III su 96.6 0.021 4.5E-07 53.1 10.1 39 174-213 118-156 (509)
276 PRK00771 signal recognition pa 96.6 0.038 8.3E-07 50.1 11.6 128 71-226 96-227 (437)
277 PRK05973 replicative DNA helic 96.5 0.031 6.8E-07 46.3 10.1 82 38-124 23-114 (237)
278 PLN03187 meiotic recombination 96.5 0.046 9.9E-07 48.0 11.6 51 5-55 4-54 (344)
279 PRK14964 DNA polymerase III su 96.5 0.014 3.1E-07 53.5 8.9 40 173-213 114-153 (491)
280 PHA02544 44 clamp loader, smal 96.5 0.021 4.5E-07 49.7 9.7 39 175-213 100-138 (316)
281 PRK07764 DNA polymerase III su 96.5 0.016 3.5E-07 56.7 9.5 39 174-213 119-157 (824)
282 PF05876 Terminase_GpA: Phage 96.5 0.0098 2.1E-07 55.8 7.7 68 55-124 16-86 (557)
283 PRK08533 flagellar accessory p 96.5 0.045 9.7E-07 45.4 10.8 54 67-124 21-74 (230)
284 COG0470 HolB ATPase involved i 96.5 0.035 7.5E-07 48.3 10.7 40 173-213 107-146 (325)
285 PF05729 NACHT: NACHT domain 96.4 0.021 4.6E-07 44.2 8.3 38 178-215 84-129 (166)
286 PTZ00293 thymidine kinase; Pro 96.4 0.029 6.3E-07 45.5 9.1 39 70-111 4-42 (211)
287 TIGR00678 holB DNA polymerase 96.4 0.072 1.6E-06 42.5 11.4 40 173-213 94-133 (188)
288 PRK06731 flhF flagellar biosyn 96.4 0.098 2.1E-06 44.4 12.6 129 70-227 75-208 (270)
289 PRK08769 DNA polymerase III su 96.4 0.056 1.2E-06 47.0 11.4 36 53-88 2-44 (319)
290 TIGR02928 orc1/cdc6 family rep 96.4 0.029 6.3E-07 49.8 9.9 24 71-95 41-64 (365)
291 PRK05298 excinuclease ABC subu 96.4 0.043 9.2E-07 52.7 11.3 67 55-127 12-83 (652)
292 PRK12323 DNA polymerase III su 96.3 0.041 9E-07 52.0 10.7 41 174-215 123-163 (700)
293 KOG1015 Transcription regulato 96.3 0.037 8.1E-07 53.7 10.4 144 72-221 698-865 (1567)
294 KOG0298 DEAD box-containing he 96.3 0.02 4.4E-07 56.9 8.9 143 70-217 374-551 (1394)
295 COG1474 CDC6 Cdc6-related prot 96.3 0.15 3.3E-06 45.3 13.7 27 71-98 43-69 (366)
296 PRK08691 DNA polymerase III su 96.3 0.031 6.7E-07 53.2 9.8 39 174-213 118-156 (709)
297 PTZ00112 origin recognition co 96.3 0.097 2.1E-06 51.1 13.0 38 174-212 868-906 (1164)
298 PRK14965 DNA polymerase III su 96.3 0.035 7.6E-07 52.4 10.2 40 173-213 117-156 (576)
299 TIGR03499 FlhF flagellar biosy 96.3 0.011 2.4E-07 50.6 6.2 19 70-88 194-212 (282)
300 PRK09183 transposase/IS protei 96.3 0.035 7.5E-07 46.9 9.1 21 67-87 99-119 (259)
301 KOG0991 Replication factor C, 96.2 0.012 2.6E-07 48.0 5.8 37 174-211 112-148 (333)
302 PRK12726 flagellar biosynthesi 96.2 0.1 2.2E-06 46.3 11.9 22 70-91 206-227 (407)
303 PRK06871 DNA polymerase III su 96.2 0.061 1.3E-06 46.9 10.6 33 56-88 3-42 (325)
304 PRK12727 flagellar biosynthesi 96.2 0.066 1.4E-06 49.5 11.1 129 69-227 349-481 (559)
305 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.069 1.5E-06 44.1 10.4 52 69-124 19-70 (229)
306 PRK08699 DNA polymerase III su 96.2 0.06 1.3E-06 47.0 10.4 33 56-88 2-39 (325)
307 PRK14962 DNA polymerase III su 96.2 0.059 1.3E-06 49.5 10.7 18 72-89 38-55 (472)
308 TIGR02525 plasmid_TraJ plasmid 96.2 0.017 3.6E-07 51.3 6.8 39 69-108 148-186 (372)
309 PHA00729 NTP-binding motif con 96.1 0.051 1.1E-06 44.6 9.1 74 153-226 60-138 (226)
310 COG2256 MGS1 ATPase related to 96.1 0.025 5.3E-07 49.8 7.4 18 71-88 49-66 (436)
311 PRK14959 DNA polymerase III su 96.1 0.037 7.9E-07 52.2 9.1 20 72-91 40-59 (624)
312 PRK14961 DNA polymerase III su 96.1 0.045 9.8E-07 48.7 9.4 39 174-213 118-156 (363)
313 COG3973 Superfamily I DNA and 96.1 0.04 8.7E-07 51.0 8.9 90 37-126 186-285 (747)
314 PRK07994 DNA polymerase III su 96.1 0.037 8E-07 52.6 9.1 38 174-212 118-155 (647)
315 PHA03372 DNA packaging termina 96.1 0.084 1.8E-06 49.2 11.0 126 70-216 202-337 (668)
316 PRK00440 rfc replication facto 96.1 0.061 1.3E-06 46.7 10.0 38 175-213 102-139 (319)
317 PRK06964 DNA polymerase III su 96.1 0.067 1.4E-06 47.0 10.0 33 56-88 2-39 (342)
318 PF03237 Terminase_6: Terminas 96.0 0.21 4.6E-06 44.0 13.6 144 74-231 1-154 (384)
319 COG3421 Uncharacterized protei 96.0 0.02 4.3E-07 52.8 6.8 142 75-227 2-175 (812)
320 PRK14957 DNA polymerase III su 96.0 0.065 1.4E-06 50.0 10.3 39 174-213 118-156 (546)
321 TIGR01425 SRP54_euk signal rec 96.0 0.24 5.3E-06 44.7 13.6 59 72-136 102-162 (429)
322 PRK07993 DNA polymerase III su 96.0 0.058 1.3E-06 47.3 9.5 33 56-88 3-42 (334)
323 PRK13851 type IV secretion sys 96.0 0.015 3.2E-07 51.1 5.7 44 66-113 158-201 (344)
324 TIGR03015 pepcterm_ATPase puta 96.0 0.25 5.4E-06 41.8 13.1 34 55-88 23-61 (269)
325 PRK08451 DNA polymerase III su 96.0 0.04 8.6E-07 51.2 8.7 40 173-213 115-154 (535)
326 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.093 2E-06 40.7 9.4 53 173-225 93-147 (159)
327 PRK13342 recombination factor 96.0 0.055 1.2E-06 49.0 9.5 18 71-88 37-54 (413)
328 cd00984 DnaB_C DnaB helicase C 96.0 0.1 2.2E-06 43.4 10.5 40 68-109 11-50 (242)
329 PRK14955 DNA polymerase III su 96.0 0.1 2.3E-06 47.0 11.2 18 72-89 40-57 (397)
330 PRK11823 DNA repair protein Ra 95.9 0.062 1.3E-06 49.1 9.7 95 63-189 68-170 (446)
331 PRK14952 DNA polymerase III su 95.9 0.061 1.3E-06 50.7 9.8 39 174-213 117-155 (584)
332 TIGR00064 ftsY signal recognit 95.9 0.19 4.2E-06 42.7 12.1 35 71-108 73-107 (272)
333 PRK14963 DNA polymerase III su 95.9 0.037 7.9E-07 51.3 8.2 16 73-88 39-54 (504)
334 PRK09112 DNA polymerase III su 95.9 0.13 2.9E-06 45.4 11.4 39 174-213 140-178 (351)
335 PRK04195 replication factor C 95.9 0.067 1.5E-06 49.5 10.0 18 70-87 39-56 (482)
336 COG2909 MalT ATP-dependent tra 95.9 0.021 4.6E-07 54.8 6.5 45 174-218 128-172 (894)
337 PRK09111 DNA polymerase III su 95.9 0.071 1.5E-06 50.5 10.0 40 173-213 130-169 (598)
338 PRK08939 primosomal protein Dn 95.9 0.071 1.5E-06 46.1 9.3 46 70-119 156-201 (306)
339 KOG1001 Helicase-like transcri 95.9 0.066 1.4E-06 51.2 9.8 124 58-190 135-269 (674)
340 PRK06645 DNA polymerase III su 95.9 0.12 2.6E-06 48.0 11.2 18 72-89 45-62 (507)
341 PRK13900 type IV secretion sys 95.8 0.039 8.4E-07 48.3 7.6 43 67-113 157-199 (332)
342 PRK06904 replicative DNA helic 95.8 0.21 4.5E-06 46.0 12.6 149 67-220 218-387 (472)
343 PRK14969 DNA polymerase III su 95.8 0.079 1.7E-06 49.5 9.9 40 173-213 117-156 (527)
344 COG3972 Superfamily I DNA and 95.8 0.059 1.3E-06 48.7 8.5 80 43-125 151-230 (660)
345 PF01695 IstB_IS21: IstB-like 95.8 0.022 4.7E-07 45.2 5.4 46 69-118 46-91 (178)
346 PRK13341 recombination factor 95.7 0.054 1.2E-06 52.4 8.8 40 175-219 109-148 (725)
347 PRK14951 DNA polymerase III su 95.7 0.037 8.1E-07 52.3 7.3 39 174-213 123-161 (618)
348 PF05496 RuvB_N: Holliday junc 95.7 0.016 3.4E-07 47.3 4.2 16 72-87 52-67 (233)
349 COG2805 PilT Tfp pilus assembl 95.7 0.031 6.7E-07 47.4 6.0 29 71-100 126-154 (353)
350 PRK05896 DNA polymerase III su 95.7 0.06 1.3E-06 50.6 8.5 18 72-89 40-57 (605)
351 COG0593 DnaA ATPase involved i 95.6 0.077 1.7E-06 47.4 8.7 47 175-221 175-223 (408)
352 COG4962 CpaF Flp pilus assembl 95.6 0.05 1.1E-06 47.1 7.2 58 52-113 154-212 (355)
353 cd01121 Sms Sms (bacterial rad 95.6 0.13 2.8E-06 45.8 10.1 97 63-188 70-171 (372)
354 TIGR02524 dot_icm_DotB Dot/Icm 95.6 0.034 7.4E-07 49.2 6.4 28 69-97 133-160 (358)
355 PRK12724 flagellar biosynthesi 95.5 0.33 7.2E-06 43.7 12.4 126 71-227 224-356 (432)
356 PRK06620 hypothetical protein; 95.5 0.035 7.5E-07 45.5 5.9 16 71-86 45-60 (214)
357 PRK05986 cob(I)alamin adenolsy 95.5 0.083 1.8E-06 42.1 7.7 144 69-225 21-167 (191)
358 PRK07471 DNA polymerase III su 95.5 0.13 2.8E-06 45.7 9.7 42 173-215 139-180 (365)
359 PRK04328 hypothetical protein; 95.5 0.14 3.1E-06 43.0 9.5 53 69-125 22-74 (249)
360 PRK06090 DNA polymerase III su 95.4 0.14 3.1E-06 44.5 9.5 34 55-88 3-43 (319)
361 TIGR00767 rho transcription te 95.4 0.11 2.5E-06 46.3 9.0 31 67-98 165-195 (415)
362 PRK04841 transcriptional regul 95.4 0.13 2.8E-06 51.5 10.6 45 174-218 120-164 (903)
363 PF06745 KaiC: KaiC; InterPro 95.4 0.032 7E-07 46.0 5.4 132 69-216 18-160 (226)
364 PRK05563 DNA polymerase III su 95.4 0.074 1.6E-06 50.1 8.1 19 72-90 40-58 (559)
365 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.11 2.5E-06 43.8 8.5 38 69-109 35-72 (259)
366 TIGR00708 cobA cob(I)alamin ad 95.3 0.16 3.4E-06 39.9 8.6 52 174-225 96-149 (173)
367 KOG0733 Nuclear AAA ATPase (VC 95.3 0.12 2.5E-06 48.2 8.8 65 154-219 584-658 (802)
368 PF02572 CobA_CobO_BtuR: ATP:c 95.3 0.56 1.2E-05 36.8 11.6 141 73-225 6-148 (172)
369 TIGR03600 phage_DnaB phage rep 95.3 0.21 4.6E-06 45.4 10.6 120 64-189 188-319 (421)
370 PF00437 T2SE: Type II/IV secr 95.3 0.033 7.2E-07 47.3 5.1 44 67-113 124-167 (270)
371 PRK06067 flagellar accessory p 95.3 0.38 8.2E-06 39.9 11.3 51 70-124 25-75 (234)
372 PF03796 DnaB_C: DnaB-like hel 95.2 0.15 3.2E-06 43.1 9.0 141 69-215 18-179 (259)
373 COG0466 Lon ATP-dependent Lon 95.2 0.14 3E-06 48.6 9.2 48 153-204 397-446 (782)
374 PRK13764 ATPase; Provisional 95.2 0.045 9.8E-07 51.5 6.2 28 69-97 256-283 (602)
375 TIGR02868 CydC thiol reductant 95.2 0.035 7.6E-07 52.0 5.4 40 173-212 486-525 (529)
376 PF01637 Arch_ATPase: Archaeal 95.2 0.04 8.7E-07 45.2 5.2 55 158-216 105-165 (234)
377 KOG0058 Peptide exporter, ABC 95.1 0.073 1.6E-06 50.4 7.1 41 173-214 620-660 (716)
378 PF03969 AFG1_ATPase: AFG1-lik 95.1 0.52 1.1E-05 41.8 12.2 109 70-219 62-171 (362)
379 PRK14950 DNA polymerase III su 95.1 0.13 2.9E-06 48.7 9.1 18 72-89 40-57 (585)
380 KOG1133 Helicase of the DEAD s 95.1 0.034 7.4E-07 52.0 4.8 41 55-95 15-59 (821)
381 cd03115 SRP The signal recogni 95.1 1.1 2.4E-05 35.0 13.0 54 174-227 81-135 (173)
382 COG2804 PulE Type II secretory 95.1 0.061 1.3E-06 48.9 6.3 42 56-98 242-285 (500)
383 TIGR02688 conserved hypothetic 95.0 0.22 4.7E-06 44.8 9.5 48 41-88 173-227 (449)
384 PRK09354 recA recombinase A; P 95.0 0.072 1.6E-06 46.7 6.4 43 70-115 60-102 (349)
385 PRK05748 replicative DNA helic 95.0 0.26 5.6E-06 45.2 10.3 114 69-188 202-327 (448)
386 TIGR02397 dnaX_nterm DNA polym 95.0 0.1 2.3E-06 46.0 7.6 16 72-87 38-53 (355)
387 PRK14954 DNA polymerase III su 94.9 0.24 5.3E-06 47.1 10.3 18 72-89 40-57 (620)
388 PRK06647 DNA polymerase III su 94.9 0.24 5.3E-06 46.6 10.1 18 72-89 40-57 (563)
389 TIGR02237 recomb_radB DNA repa 94.9 0.22 4.8E-06 40.4 8.7 39 69-110 11-49 (209)
390 TIGR00763 lon ATP-dependent pr 94.8 0.19 4.1E-06 49.4 9.5 18 70-87 347-364 (775)
391 KOG2228 Origin recognition com 94.8 1.6 3.4E-05 38.1 13.6 58 160-217 122-182 (408)
392 COG1132 MdlB ABC-type multidru 94.8 0.084 1.8E-06 49.9 6.9 39 174-212 482-520 (567)
393 PRK09376 rho transcription ter 94.8 0.19 4.1E-06 44.7 8.5 68 56-125 152-222 (416)
394 PF00265 TK: Thymidine kinase; 94.7 0.07 1.5E-06 42.2 5.2 38 72-112 3-40 (176)
395 COG0630 VirB11 Type IV secreto 94.7 0.14 2.9E-06 44.6 7.4 72 33-113 110-182 (312)
396 TIGR02012 tigrfam_recA protein 94.7 0.11 2.4E-06 45.1 6.7 44 69-115 54-97 (321)
397 cd00983 recA RecA is a bacter 94.7 0.076 1.6E-06 46.2 5.7 43 70-115 55-97 (325)
398 PRK07940 DNA polymerase III su 94.7 0.3 6.4E-06 43.9 9.6 18 71-88 37-54 (394)
399 TIGR00959 ffh signal recogniti 94.6 0.68 1.5E-05 42.1 11.8 86 72-162 101-194 (428)
400 PRK14948 DNA polymerase III su 94.6 0.17 3.7E-06 48.2 8.3 18 71-88 39-56 (620)
401 KOG0734 AAA+-type ATPase conta 94.6 0.37 8E-06 44.3 9.8 49 174-222 395-454 (752)
402 TIGR00580 mfd transcription-re 94.5 0.38 8.3E-06 48.0 10.9 79 101-187 660-742 (926)
403 PRK10867 signal recognition pa 94.5 0.7 1.5E-05 42.0 11.7 58 72-134 102-161 (433)
404 TIGR03346 chaperone_ClpB ATP-d 94.5 0.36 7.9E-06 48.0 10.7 17 71-87 195-211 (852)
405 PRK11034 clpA ATP-dependent Cl 94.5 0.18 4E-06 49.1 8.4 27 61-87 196-224 (758)
406 PF12846 AAA_10: AAA-like doma 94.5 0.054 1.2E-06 46.4 4.4 41 70-113 1-41 (304)
407 TIGR01243 CDC48 AAA family ATP 94.4 0.19 4.2E-06 49.1 8.5 52 32-86 174-228 (733)
408 TIGR03880 KaiC_arch_3 KaiC dom 94.4 0.46 9.9E-06 39.1 9.7 53 69-125 15-67 (224)
409 PRK09087 hypothetical protein; 94.4 0.15 3.2E-06 42.2 6.6 16 70-85 44-59 (226)
410 KOG0744 AAA+-type ATPase [Post 94.4 0.23 5.1E-06 42.7 7.8 67 70-137 177-257 (423)
411 COG3267 ExeA Type II secretory 94.3 0.57 1.2E-05 39.0 9.6 31 65-96 45-76 (269)
412 cd01129 PulE-GspE PulE/GspE Th 94.3 0.14 2.9E-06 43.4 6.3 60 47-112 58-119 (264)
413 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.2 0.39 8.5E-06 36.5 8.2 31 173-203 86-116 (144)
414 COG2109 BtuR ATP:corrinoid ade 94.2 0.66 1.4E-05 36.8 9.3 143 72-226 30-175 (198)
415 PRK08058 DNA polymerase III su 94.2 0.65 1.4E-05 40.7 10.6 41 173-214 108-148 (329)
416 TIGR01243 CDC48 AAA family ATP 94.1 0.17 3.7E-06 49.5 7.5 53 33-87 450-504 (733)
417 TIGR02655 circ_KaiC circadian 94.1 0.51 1.1E-05 43.7 10.3 60 62-125 250-314 (484)
418 PRK08506 replicative DNA helic 94.1 0.59 1.3E-05 43.1 10.6 113 69-188 191-315 (472)
419 PRK08840 replicative DNA helic 94.1 0.86 1.9E-05 42.0 11.6 148 66-219 213-381 (464)
420 PRK10865 protein disaggregatio 94.1 0.45 9.6E-06 47.3 10.3 17 71-87 200-216 (857)
421 KOG0741 AAA+-type ATPase [Post 94.1 0.49 1.1E-05 43.5 9.5 67 38-109 494-572 (744)
422 PRK08006 replicative DNA helic 94.0 1.2 2.7E-05 41.0 12.3 147 67-219 221-388 (471)
423 cd01130 VirB11-like_ATPase Typ 94.0 0.11 2.4E-06 41.5 4.9 40 55-95 9-49 (186)
424 COG1219 ClpX ATP-dependent pro 94.0 0.037 7.9E-07 47.4 2.2 57 32-88 43-115 (408)
425 PF05707 Zot: Zonular occluden 94.0 0.41 9E-06 38.4 8.3 51 175-226 79-135 (193)
426 cd01393 recA_like RecA is a b 93.9 0.19 4.2E-06 41.2 6.6 43 69-111 18-63 (226)
427 TIGR00416 sms DNA repair prote 93.9 0.65 1.4E-05 42.6 10.4 98 62-188 81-183 (454)
428 TIGR03819 heli_sec_ATPase heli 93.9 0.22 4.7E-06 43.9 7.1 63 45-113 154-217 (340)
429 PRK07004 replicative DNA helic 93.9 0.56 1.2E-05 43.1 10.0 141 68-214 211-372 (460)
430 cd01128 rho_factor Transcripti 93.9 0.35 7.6E-06 40.5 8.0 30 67-97 13-42 (249)
431 TIGR02858 spore_III_AA stage I 93.9 1.5 3.3E-05 37.2 11.9 22 64-85 102-126 (270)
432 PRK14971 DNA polymerase III su 93.9 0.32 6.8E-06 46.4 8.5 40 173-213 119-158 (614)
433 KOG1016 Predicted DNA helicase 93.9 0.76 1.6E-05 44.2 10.6 180 40-223 247-480 (1387)
434 cd01131 PilT Pilus retraction 93.9 0.11 2.3E-06 42.1 4.7 39 72-112 3-41 (198)
435 COG0552 FtsY Signal recognitio 93.8 1.4 3E-05 38.2 11.4 129 72-227 141-280 (340)
436 PRK12608 transcription termina 93.8 0.97 2.1E-05 40.1 10.7 39 58-97 118-159 (380)
437 PRK08760 replicative DNA helic 93.8 0.77 1.7E-05 42.4 10.6 114 69-188 228-352 (476)
438 cd01126 TraG_VirD4 The TraG/Tr 93.8 0.041 9E-07 49.3 2.4 47 72-123 1-47 (384)
439 COG1197 Mfd Transcription-repa 93.8 2 4.4E-05 43.3 13.8 162 25-205 704-899 (1139)
440 TIGR02788 VirB11 P-type DNA tr 93.7 0.15 3.2E-06 44.3 5.6 20 67-86 141-160 (308)
441 PRK10436 hypothetical protein; 93.7 0.17 3.6E-06 46.4 6.2 46 48-97 197-244 (462)
442 PRK06321 replicative DNA helic 93.7 0.89 1.9E-05 41.9 10.9 119 63-188 215-349 (472)
443 TIGR02533 type_II_gspE general 93.7 0.17 3.6E-06 46.8 6.2 47 47-97 220-268 (486)
444 TIGR01420 pilT_fam pilus retra 93.7 0.14 2.9E-06 45.3 5.4 43 69-113 121-163 (343)
445 PLN00020 ribulose bisphosphate 93.7 0.12 2.6E-06 45.5 4.9 35 155-189 188-226 (413)
446 PRK07414 cob(I)yrinic acid a,c 93.7 1.1 2.4E-05 35.3 9.8 52 173-224 113-166 (178)
447 PRK14953 DNA polymerase III su 93.7 0.42 9.2E-06 44.2 8.7 17 73-89 41-57 (486)
448 TIGR00665 DnaB replicative DNA 93.6 1.1 2.5E-05 40.8 11.4 140 69-214 194-353 (434)
449 TIGR00635 ruvB Holliday juncti 93.6 0.093 2E-06 45.4 4.2 16 71-86 31-46 (305)
450 KOG2028 ATPase related to the 93.6 0.51 1.1E-05 41.4 8.4 50 71-123 163-212 (554)
451 PRK06305 DNA polymerase III su 93.6 0.39 8.6E-06 44.0 8.3 18 72-89 41-58 (451)
452 KOG2543 Origin recognition com 93.4 1.2 2.7E-05 39.3 10.5 64 174-238 114-179 (438)
453 PRK13695 putative NTPase; Prov 93.3 1.3 2.9E-05 34.7 10.1 17 72-88 2-18 (174)
454 TIGR02639 ClpA ATP-dependent C 93.3 0.75 1.6E-05 45.0 10.2 17 71-87 204-220 (731)
455 PF02534 T4SS-DNA_transf: Type 93.2 0.086 1.9E-06 48.6 3.6 49 71-124 45-93 (469)
456 COG1702 PhoH Phosphate starvat 93.2 0.6 1.3E-05 40.5 8.3 56 53-109 126-181 (348)
457 PRK09165 replicative DNA helic 93.2 0.61 1.3E-05 43.4 9.0 115 69-188 216-354 (497)
458 PF01443 Viral_helicase1: Vira 93.1 0.055 1.2E-06 44.7 2.0 14 73-86 1-14 (234)
459 TIGR02538 type_IV_pilB type IV 93.1 0.24 5.1E-06 46.8 6.3 45 48-96 295-341 (564)
460 TIGR02640 gas_vesic_GvpN gas v 93.1 0.11 2.3E-06 44.1 3.6 26 63-88 14-39 (262)
461 KOG0732 AAA+-type ATPase conta 93.0 0.28 6.1E-06 48.7 6.8 143 31-216 260-414 (1080)
462 KOG0730 AAA+-type ATPase [Post 93.0 0.36 7.9E-06 45.3 7.1 55 30-87 428-485 (693)
463 COG1074 RecB ATP-dependent exo 93.0 0.19 4.2E-06 51.4 5.9 55 69-123 15-71 (1139)
464 PRK10689 transcription-repair 93.0 0.56 1.2E-05 48.0 9.0 79 101-187 809-891 (1147)
465 PF04665 Pox_A32: Poxvirus A32 92.9 0.17 3.7E-06 42.0 4.5 36 71-109 14-49 (241)
466 TIGR03345 VI_ClpV1 type VI sec 92.9 1.6 3.6E-05 43.4 12.0 17 71-87 209-225 (852)
467 KOG0331 ATP-dependent RNA heli 92.9 0.71 1.5E-05 42.6 8.7 83 88-181 329-415 (519)
468 KOG2170 ATPase of the AAA+ sup 92.9 0.41 8.9E-06 40.8 6.7 51 176-227 179-236 (344)
469 TIGR03375 type_I_sec_LssB type 92.8 0.073 1.6E-06 51.6 2.6 41 173-213 617-657 (694)
470 COG1221 PspF Transcriptional r 92.8 0.58 1.3E-05 41.9 7.8 39 69-109 100-139 (403)
471 PF13481 AAA_25: AAA domain; P 92.7 0.38 8.2E-06 38.4 6.3 58 69-127 31-95 (193)
472 TIGR03743 SXT_TraD conjugative 92.7 0.28 6.1E-06 46.9 6.2 53 70-125 176-230 (634)
473 PRK12900 secA preprotein trans 92.7 0.18 3.9E-06 49.8 4.9 83 207-292 534-618 (1025)
474 KOG1806 DEAD box containing he 92.7 0.22 4.8E-06 48.9 5.4 72 52-124 735-806 (1320)
475 TIGR02203 MsbA_lipidA lipid A 92.6 0.18 3.9E-06 47.7 4.9 41 173-213 485-525 (571)
476 PRK07399 DNA polymerase III su 92.6 1.5 3.3E-05 38.1 10.2 58 154-214 104-161 (314)
477 cd03239 ABC_SMC_head The struc 92.6 0.18 3.8E-06 40.0 4.1 41 174-214 115-156 (178)
478 KOG2004 Mitochondrial ATP-depe 92.6 0.86 1.9E-05 43.5 8.9 110 56-204 416-534 (906)
479 PRK14970 DNA polymerase III su 92.6 1.2 2.6E-05 39.6 9.9 18 71-88 40-57 (367)
480 PRK05595 replicative DNA helic 92.6 1.3 2.8E-05 40.6 10.2 114 69-188 200-324 (444)
481 COG0542 clpA ATP-binding subun 92.6 1.1 2.4E-05 43.5 9.9 16 72-87 523-538 (786)
482 PF12775 AAA_7: P-loop contain 92.5 0.091 2E-06 44.7 2.5 20 67-86 30-49 (272)
483 KOG1513 Nuclear helicase MOP-3 92.5 0.2 4.4E-06 47.9 4.9 155 55-216 264-454 (1300)
484 TIGR02204 MsbA_rel ABC transpo 92.5 0.16 3.5E-06 48.1 4.5 41 174-214 493-533 (576)
485 PF13555 AAA_29: P-loop contai 92.5 0.12 2.7E-06 33.0 2.5 19 69-87 22-40 (62)
486 cd03228 ABCC_MRP_Like The MRP 92.5 0.76 1.6E-05 36.0 7.6 41 173-214 112-152 (171)
487 cd01125 repA Hexameric Replica 92.4 1.7 3.7E-05 36.1 10.0 55 72-127 3-66 (239)
488 PHA02535 P terminase ATPase su 92.4 1.8 3.8E-05 40.7 10.8 86 40-127 123-208 (581)
489 KOG0742 AAA+-type ATPase [Post 92.4 0.6 1.3E-05 41.6 7.3 16 71-86 385-400 (630)
490 cd03247 ABCC_cytochrome_bd The 92.3 1.5 3.3E-05 34.5 9.2 39 173-212 114-152 (178)
491 PRK10416 signal recognition pa 92.3 0.84 1.8E-05 39.8 8.3 54 174-227 195-255 (318)
492 PF14516 AAA_35: AAA-like doma 92.3 1.5 3.2E-05 38.5 9.9 49 57-108 17-66 (331)
493 PF06733 DEAD_2: DEAD_2; Inte 92.3 0.097 2.1E-06 41.3 2.2 45 146-190 114-160 (174)
494 PRK13897 type IV secretion sys 92.3 0.14 3.1E-06 48.4 3.6 49 71-124 159-207 (606)
495 cd03289 ABCC_CFTR2 The CFTR su 92.2 0.48 1E-05 40.4 6.5 42 173-214 154-195 (275)
496 PRK11176 lipid transporter ATP 92.2 0.23 4.9E-06 47.2 5.0 42 174-215 497-538 (582)
497 PF10412 TrwB_AAD_bind: Type I 92.2 0.19 4E-06 45.2 4.2 48 67-117 12-59 (386)
498 PRK07133 DNA polymerase III su 92.2 0.32 7E-06 46.8 5.9 18 72-89 42-59 (725)
499 TIGR03345 VI_ClpV1 type VI sec 92.1 0.7 1.5E-05 45.9 8.4 16 72-87 598-613 (852)
500 PF03266 NTPase_1: NTPase; In 92.1 0.15 3.4E-06 39.9 3.2 40 174-219 94-135 (168)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-51 Score=329.04 Aligned_cols=283 Identities=74% Similarity=1.131 Sum_probs=271.9
Q ss_pred hCCCCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHH
Q 022724 10 RGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~ 89 (293)
+..+....++...+++++...++++|++++++++++++++..||+.|+.+|+.|++.+++|+|++..+.+|+|||.+|.+
T Consensus 4 r~~~~~~~~~~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si 83 (400)
T KOG0328|consen 4 RELFTMEDMDTVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSI 83 (400)
T ss_pred hhhcccccccceeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEe
Confidence 44556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC
Q 022724 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK 169 (293)
Q Consensus 90 ~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~ 169 (293)
.+++.+.-..+..+++|+.|||+|+.|+.+.+..++...++++..+.||.+..++++++..+.+++.+||++++.+++++
T Consensus 84 ~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~ 163 (400)
T KOG0328|consen 84 SVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR 163 (400)
T ss_pred eeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc
Confidence 99999888878889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEE
Q 022724 170 TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQF 249 (293)
Q Consensus 170 ~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (293)
.+.-+.++++|+||+|.|++.+|..++-.+.+++++..|++++|||+|.++.++..+++.+|..+.+.+.+.+.+++.|+
T Consensus 164 ~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf 243 (400)
T KOG0328|consen 164 SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQF 243 (400)
T ss_pred cccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 250 FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 250 ~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
++.++.++||...|.++++.....+++|||||+..+.++.+.+
T Consensus 244 ~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm 286 (400)
T KOG0328|consen 244 FVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM 286 (400)
T ss_pred eeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHH
Confidence 9999999999999999999999999999999999999988754
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-50 Score=333.29 Aligned_cols=263 Identities=31% Similarity=0.512 Sum_probs=251.5
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 29 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
.+...+|.++++.+++.+++++.||..||++|++++|..+.|+|++..|.||||||.+|++|+++++...+..++++|++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLt 136 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLT 136 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEec
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHh-cCCCCCCCccEEEecchhhh
Q 022724 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK-RKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~-~~~~~~~~l~~iViDE~h~~ 187 (293)
|+|||+.|+.+.++.++..+|+++..+.||.+...+...+.+.++|+|+||++|...+. .+.+.+..++++|+||||.+
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888 57899999999999999999
Q ss_pred hccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHH
Q 022724 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 267 (293)
++..|...+..+++.++...|.+++|||++..+.++....+.+|..+.+.........+.|.|.+++... |...|.+++
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~-K~~yLV~ll 295 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-KDTYLVYLL 295 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc-cchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 999999999
Q ss_pred hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 268 DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 268 ~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+...++++||||++...++.++-.|
T Consensus 296 ~e~~g~s~iVF~~t~~tt~~la~~L 320 (476)
T KOG0330|consen 296 NELAGNSVIVFCNTCNTTRFLALLL 320 (476)
T ss_pred HhhcCCcEEEEEeccchHHHHHHHH
Confidence 9999999999999999999887554
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-49 Score=346.75 Aligned_cols=258 Identities=31% Similarity=0.568 Sum_probs=239.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhcc------CCCceeEEEE
Q 022724 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALIL 107 (293)
Q Consensus 34 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~------~~~~~~~lil 107 (293)
.|++++++++...+++..||+.|+|+|.+.||.+++|+|++..+.||||||++|++|++.++.. ...+|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 6888999999999999999999999999999999999999999999999999999999999875 4567999999
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
+||||||.|+...+.++.....++..+++||.+...|.+.+.++++|+|+||+++.+++..+..+++++.++|+||||.|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHhhC-CCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCc--ccCCCceEEEEEecCcccHHHHHH
Q 022724 188 LSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE--LTLEGIKQFFVAVEREEWKFDTLC 264 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l-~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~k~~~l~ 264 (293)
++.+|..+++.++..+ ++..|++++|||||..++.++..++.+|..+.+...+ ....++.|....++... |...+.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~-K~~~l~ 330 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETA-KLRKLG 330 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHH-HHHHHH
Confidence 9999999999999999 5566899999999999999999999999999988653 45678999999999555 888888
Q ss_pred HHHhhC---CCCcEEEEcccchhHHHHHhhC
Q 022724 265 DLYDTL---TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 265 ~l~~~~---~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.++... +.+|+||||+|++.|++++..|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l 361 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNL 361 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHH
Confidence 888765 3569999999999999998875
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-47 Score=347.28 Aligned_cols=260 Identities=40% Similarity=0.652 Sum_probs=243.2
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhcc--CCCceeEEEEcCC
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT--SSREVQALILSPT 110 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~--~~~~~~~lil~P~ 110 (293)
..|+++++++++++++.+.||..|||+|.+++|.++.|+|+++.++||+|||++|++|+++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 78999999999999999999999999999999999999999999999999999999999999874 3222229999999
Q ss_pred HHHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc
Q 022724 111 RELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
||||.|+++.+..+.... ++++..++||.+...+...+..+++|+|+||+++++++.++.++++++.++|+||||.|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999988 7999999999999999988888899999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcc--cCCCceEEEEEecCcccHHHHHHHHH
Q 022724 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWKFDTLCDLY 267 (293)
Q Consensus 190 ~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~k~~~l~~l~ 267 (293)
.||.+.+..+++.++...|++++|||+|+.+..+.+.++.+|..+.+..... ....+.|+++.++....|...|..++
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888885555 77899999999998767999999999
Q ss_pred hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 268 DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 268 ~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+.....++||||+|++.|+.++..|
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l 293 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESL 293 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHH
Confidence 9888889999999999999998765
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.3e-46 Score=342.67 Aligned_cols=268 Identities=29% Similarity=0.440 Sum_probs=238.2
Q ss_pred ecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC-----
Q 022724 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----- 98 (293)
Q Consensus 24 ~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~----- 98 (293)
+....|.++.+|+++++++++++++.++||..|||+|.++||.+++|+|+++++|||||||++|++|++..+...
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~ 200 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRY 200 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccC
Confidence 456678889999999999999999999999999999999999999999999999999999999999998876542
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccE
Q 022724 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (293)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~ 178 (293)
..++++|||+||++||.|+.+.++++....++++..++|+.+...+...+.++++|+|+||++|.+++..+...++++++
T Consensus 201 ~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 201 GDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 24678999999999999999999999988899999999999888888888889999999999999999998888999999
Q ss_pred EEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCC-CCEEEEecCCc-ccCCCceEEEEEecCc
Q 022724 179 LVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRDE-LTLEGIKQFFVAVERE 256 (293)
Q Consensus 179 iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 256 (293)
|||||||++++.+|...+..++..+++..|++++|||++..+..+...++. ++..+.+...+ ....++.+.+..++..
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~ 360 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH 360 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech
Confidence 999999999999999999999999999999999999999999999888875 57777765544 2345677777777665
Q ss_pred ccHHHHHHHHHhhC--CCCcEEEEcccchhHHHHHhhC
Q 022724 257 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 257 ~~k~~~l~~l~~~~--~~~~~iIF~~s~~~a~~l~~~L 292 (293)
. |...+..+++.. ...++||||++++.|+.++..|
T Consensus 361 ~-k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L 397 (545)
T PTZ00110 361 E-KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKEL 397 (545)
T ss_pred h-HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHH
Confidence 5 888888887654 4569999999999999998876
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-45 Score=331.51 Aligned_cols=261 Identities=30% Similarity=0.425 Sum_probs=234.0
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC-------CCcee
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQ 103 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-------~~~~~ 103 (293)
...+|+++++++++++++.++||..|+|+|+++||.+++|+|++++||||||||++|++|+++.+... ..+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 34689999999999999999999999999999999999999999999999999999999999887542 23578
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecc
Q 022724 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (293)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE 183 (293)
+|||+|+++||.|+.+.+..+....++++..++|+.+...+...+.++++|+|+||+++.+++.++.+.+++++++||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999999999999999999988888888888899999999999999999889999999999999
Q ss_pred hhhhhccccHHHHHHHHhhCCC--CccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHH
Q 022724 184 SDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD 261 (293)
Q Consensus 184 ~h~~~~~~~~~~~~~i~~~l~~--~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 261 (293)
||++++.+|...+..++..++. ..+.+++|||++..+..+....+.+|..+.+.........+.+.+....... |..
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~-k~~ 244 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEE-KMR 244 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHH-HHH
Confidence 9999999999999999999874 4668999999999999999889999988887766655666777766655444 888
Q ss_pred HHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 262 TLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 262 ~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+..+++.....++||||++++.|+.+++.|
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L 275 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHL 275 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHH
Confidence 8888888777789999999999999998876
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.4e-45 Score=334.33 Aligned_cols=259 Identities=38% Similarity=0.616 Sum_probs=238.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
..+|+++++++.+.+++.++||..|+|+|.++||.+++|+|++++||||+|||++|++|+++.+......++++|++||+
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 35899999999999999999999999999999999999999999999999999999999999997766667999999999
Q ss_pred HHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
+|+.|+.+.++.+.... ++++..++|+.+...+...+..+++|+|+||+++..++.++.+.++++++||+||+|.+++.
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~ 162 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM 162 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc
Confidence 99999999999887654 78899999999998888888889999999999999999998888999999999999999999
Q ss_pred ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhC
Q 022724 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (293)
Q Consensus 191 ~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~ 270 (293)
+|...+..++..++...|++++|||+++.+..+...++.+|..+.+.... ....+.+.+..++... |...+..++...
T Consensus 163 g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~~l~~ll~~~ 240 (460)
T PRK11776 163 GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLPALQRLLLHH 240 (460)
T ss_pred CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988876544 3455888888888776 999999999888
Q ss_pred CCCcEEEEcccchhHHHHHhhC
Q 022724 271 TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 271 ~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+.++||||++++.|+.+++.|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L 262 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADAL 262 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHH
Confidence 8889999999999999999876
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.5e-45 Score=334.86 Aligned_cols=269 Identities=29% Similarity=0.488 Sum_probs=238.5
Q ss_pred eeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhcc----
Q 022724 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT---- 97 (293)
Q Consensus 22 ~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~---- 97 (293)
.+.+...|.++.+|+++++++.++++|.+.||..|||+|.++||.+++|+|+++++|||||||++|++|++..+..
T Consensus 110 ~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~ 189 (518)
T PLN00206 110 HVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSG 189 (518)
T ss_pred EecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccc
Confidence 3456667889999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred ---CCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCC
Q 022724 98 ---SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTR 174 (293)
Q Consensus 98 ---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~ 174 (293)
...++++||++||++|+.|+.+.++.+....++++..+.||.....+...+..+++|+|+||+++.+++..+...++
T Consensus 190 ~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~ 269 (518)
T PLN00206 190 HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELD 269 (518)
T ss_pred cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccch
Confidence 22567999999999999999999999998888999999999988888888888899999999999999998888999
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEec
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 254 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 254 (293)
++++|||||||.|++++|...+..++..++ ..|++++|||+++.+..+...++.++..+.+.........+.+.+..+.
T Consensus 270 ~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~ 348 (518)
T PLN00206 270 NVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVE 348 (518)
T ss_pred heeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEecc
Confidence 999999999999999999999999998885 6899999999999999999999999988888766655566788888777
Q ss_pred CcccHHHHHHHHHhhCC--CCcEEEEcccchhHHHHHhhC
Q 022724 255 REEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 255 ~~~~k~~~l~~l~~~~~--~~~~iIF~~s~~~a~~l~~~L 292 (293)
... |...+..++.... ..++||||+++..|+.+++.|
T Consensus 349 ~~~-k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L 387 (518)
T PLN00206 349 TKQ-KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAI 387 (518)
T ss_pred chh-HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHH
Confidence 666 6677777776433 358999999999999998765
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.6e-45 Score=330.83 Aligned_cols=258 Identities=35% Similarity=0.573 Sum_probs=235.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC------CceeEEEE
Q 022724 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS------REVQALIL 107 (293)
Q Consensus 34 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~------~~~~~lil 107 (293)
+|++++|++++.+++.++||..||++|.++||.+++|+|+++++|||+|||++|++|+++.+.... ..+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 699999999999999999999999999999999999999999999999999999999999885432 23589999
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
+||++|+.|+.+.++.+....++++..++|+.+...+...+..+++|+|+||++|.+++....+.++++++|||||+|++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999999999999999999988888888888999999999999999888888999999999999999
Q ss_pred hccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHH
Q 022724 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 267 (293)
++++|...+..++..++...|++++|||+++.+..+...++.+|..+.+.........+.+.+..++... +...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR-KRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988887766666677888888777665 778888888
Q ss_pred hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 268 DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 268 ~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
......++||||++++.|+.+++.|
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L 265 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQL 265 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHH
Confidence 8777789999999999999998875
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.4e-45 Score=338.59 Aligned_cols=260 Identities=33% Similarity=0.546 Sum_probs=238.9
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
..+|++++|++.++++|.++||..|+|+|.++||.+++|+|+++.||||+|||++|.+|+++.+.....++++||++||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 45799999999999999999999999999999999999999999999999999999999999987766678999999999
Q ss_pred HHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
+|+.|+.+.+..+.... ++.+..++|+.+...+.+.+..+++|+|+||+++.+++.++.+.++++++||+||||.+++.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 99999999999887665 78999999999988888888888999999999999999998899999999999999999999
Q ss_pred ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhC
Q 022724 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (293)
Q Consensus 191 ~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~ 270 (293)
+|...+..++..++...|++++|||+|+.+..+...++.+|..+.+.........+.+.+..+.... |...+..++...
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~-k~~~L~~~L~~~ 243 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLEAE 243 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhh-HHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998888766666677888888777665 888898988887
Q ss_pred CCCcEEEEcccchhHHHHHhhC
Q 022724 271 TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 271 ~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...++||||+|+..|+.++..|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L 265 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEAL 265 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHH
Confidence 7789999999999999998876
No 11
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-44 Score=335.00 Aligned_cols=259 Identities=32% Similarity=0.465 Sum_probs=232.4
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC-------CCceeEE
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQAL 105 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-------~~~~~~l 105 (293)
.+|+++++++.++++|.++||..|||+|.++||.+++|+|+++++|||+|||++|++|+++.+... ..++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 479999999999999999999999999999999999999999999999999999999999987542 1247999
Q ss_pred EEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEecch
Q 022724 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDES 184 (293)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~-~~~~~~l~~iViDE~ 184 (293)
||+|+++|+.|+++.+..+....++++..++|+.....+...+.++++|+|+||++|.+++.+. .+.+..+++|||||+
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999988888878888999999999999988774 567889999999999
Q ss_pred hhhhccccHHHHHHHHhhCCC--CccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHH
Q 022724 185 DEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262 (293)
Q Consensus 185 h~~~~~~~~~~~~~i~~~l~~--~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 262 (293)
|++++.+|...+..+++.++. ..|++++|||+++.+..+...++.+|..+.+.........+.+.+..+.... |...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEE-KQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHH-HHHH
Confidence 999999999999999999986 6899999999999999999999988888777665555667788877766555 8888
Q ss_pred HHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 263 LCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 263 l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+..++....+.++||||||++.|+.+++.|
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L 277 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTL 277 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHH
Confidence 888888877789999999999999999876
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.8e-44 Score=322.05 Aligned_cols=259 Identities=29% Similarity=0.473 Sum_probs=235.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC----CCceeEEEEcC
Q 022724 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALILSP 109 (293)
Q Consensus 34 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~----~~~~~~lil~P 109 (293)
+|+++++++.+++.+.++||..|+++|.++|+.+++|+|+++++|||+|||++|++|+++.+... ...+++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999887532 23468999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc
Q 022724 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
+++|+.|+.+.+..+....++++..++|+.....+...+.++++|+|+||++|.+++..+.+++.++++|||||+|.+++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999999999999999999988888777888899999999999999999889999999999999999999
Q ss_pred cccHHHHHHHHhhCCCCccEEEEEeecCh-hHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHh
Q 022724 190 RGFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (293)
Q Consensus 190 ~~~~~~~~~i~~~l~~~~q~v~~SAt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 268 (293)
++|...+..+...++...|++++|||++. .+..+...++.+|..+...........+.+.+..++....|...+..+++
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999989999999999985 57888888888999888877666667788888888776668888999998
Q ss_pred hCCCCcEEEEcccchhHHHHHhhC
Q 022724 269 TLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 269 ~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.....++||||+++++|+.++..|
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L 265 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWL 265 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHH
Confidence 767789999999999999999876
No 13
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-45 Score=314.96 Aligned_cols=259 Identities=30% Similarity=0.496 Sum_probs=239.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCc---eeEEEEc
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILS 108 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~---~~~lil~ 108 (293)
..+|.+++|+..+++++..+||..|||+|..+||..+-|+|++.||.||+|||.+|++|+++++.-.+.+ .|+|||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 4589999999999999999999999999999999999999999999999999999999999998766543 5999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEecchhhh
Q 022724 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-~~~~~~~l~~iViDE~h~~ 187 (293)
|||+|+.|+..+.+++..+.++.++++.||-+...|...+...|||+|+||++|...+++ ..+.++++..+|+||||.|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999877 6789999999999999999
Q ss_pred hccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEec--CcccHHHHHHH
Q 022724 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE--REEWKFDTLCD 265 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~k~~~l~~ 265 (293)
++.+|...+..+++.++++.|.++||||+++.+++++...+..|+.+.+++....+..+.|.++.+. .+.++..++..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888888888777554 34457777888
Q ss_pred HHhhCCCCcEEEEcccchhHHHHHh
Q 022724 266 LYDTLTITQAVIFCNTKRKVLLLVL 290 (293)
Q Consensus 266 l~~~~~~~~~iIF~~s~~~a~~l~~ 290 (293)
++...-..+++||+.|++.|..+.-
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~I 444 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRI 444 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHH
Confidence 8876656799999999999998764
No 14
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-45 Score=298.74 Aligned_cols=258 Identities=37% Similarity=0.646 Sum_probs=247.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
...|+++.|..+++..+.+.||++|+|+|.+++|..+.|+|++..|..|+|||-+|.+|.++++.......+++|++|++
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtr 163 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTR 163 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecc
Confidence 34699999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc
Q 022724 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~ 191 (293)
+||.|+...++.+.+..++.+....||++..+++-.+.+..+++|+||++++++.+.+.-+++++.++|+||||.+++..
T Consensus 164 elALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 164 ELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred hhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchh
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCC
Q 022724 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 271 (293)
Q Consensus 192 ~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~ 271 (293)
|...+..++..+|+..|++++|||+|-.+..+...++.+|..+..- .+.++.++.|+|.++.+.. |..-|..++.+..
T Consensus 244 F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~q-KvhCLntLfskLq 321 (459)
T KOG0326|consen 244 FQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQ-KVHCLNTLFSKLQ 321 (459)
T ss_pred hhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhh-hhhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999876 4577889999999999988 9999999999999
Q ss_pred CCcEEEEcccchhHHHHHhh
Q 022724 272 ITQAVIFCNTKRKVLLLVLQ 291 (293)
Q Consensus 272 ~~~~iIF~~s~~~a~~l~~~ 291 (293)
..+.||||||.+.++.+|..
T Consensus 322 INQsIIFCNS~~rVELLAkK 341 (459)
T KOG0326|consen 322 INQSIIFCNSTNRVELLAKK 341 (459)
T ss_pred ccceEEEeccchHhHHHHHH
Confidence 99999999999999999874
No 15
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-44 Score=302.88 Aligned_cols=259 Identities=29% Similarity=0.449 Sum_probs=227.4
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC------CCceeEEE
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALI 106 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~------~~~~~~li 106 (293)
..|++++|++++++++.+.||..||-+|+.+||.++.|+|++..|.||||||.+|++|+++.+... ..++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999988543 35789999
Q ss_pred EcCCHHHHHHHHHHHHHhhccCC--ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC-CCCCCccEEEecc
Q 022724 107 LSPTRELATQTEKVILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDE 183 (293)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~-~~~~~l~~iViDE 183 (293)
++||+||+.|++..+.++..... +++.-+.++.+.....-.+.+.++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999998865553 45555555554444445667889999999999999998876 6789999999999
Q ss_pred hhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCccc-CCCceEEEEEecCcccHHHH
Q 022724 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT-LEGIKQFFVAVEREEWKFDT 262 (293)
Q Consensus 184 ~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~k~~~ 262 (293)
||.++..||.+++..+.+.+|+..|-++||||+++++..+...++.+|..+.....+.. +..+.|+++.|..++ |...
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~D-Kfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEED-KFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccch-hHHH
Confidence 99999999999999999999999999999999999999999999999999988776654 466999999999555 9988
Q ss_pred HHHHHhh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 263 LCDLYDT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 263 l~~l~~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+..+++- .-.++.|||+||++.|.++.-.|
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfL 288 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFL 288 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHH
Confidence 8888873 34579999999999999886543
No 16
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-43 Score=300.36 Aligned_cols=260 Identities=31% Similarity=0.516 Sum_probs=235.0
Q ss_pred cCcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC-----CceeEE
Q 022724 33 TSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-----REVQAL 105 (293)
Q Consensus 33 ~~f~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-----~~~~~l 105 (293)
.+|++++ |+++++.++.++||...||+|..++|.+++++|+++.++||||||+||++|+++.+.... ...-++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4677775 569999999999999999999999999999999999999999999999999999983321 123689
Q ss_pred EEcCCHHHHHHHHHHHHHhhcc-CCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcC--CCCCCCccEEEe
Q 022724 106 ILSPTRELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLVL 181 (293)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~--~~~~~~l~~iVi 181 (293)
|++|||||+.|+.+++..+... .++++.++.||.+..+++..+. ++++|+||||++|.+++.+. .+++++++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988766 6889999999999998888764 67899999999999999873 455679999999
Q ss_pred cchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcc--cCCCceEEEEEecCcccH
Q 022724 182 DESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWK 259 (293)
Q Consensus 182 DE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~k 259 (293)
||||.+++.||...++.|++++|+.++.=++|||.+.++.++....+++|..+.+..... ++.++..+|..|+... |
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e-K 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE-K 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH-H
Confidence 999999999999999999999999999999999999999999999999999999987765 7888999999999888 9
Q ss_pred HHHHHHHHhhCCCCcEEEEcccchhHHHHHhhCC
Q 022724 260 FDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQFP 293 (293)
Q Consensus 260 ~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L~ 293 (293)
...+.+++.....+++|||..|...++..+..|+
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~ 276 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFS 276 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHH
Confidence 9999999999988999999999999999887653
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-42 Score=315.64 Aligned_cols=261 Identities=27% Similarity=0.483 Sum_probs=230.9
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC-------Ccee
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-------REVQ 103 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-------~~~~ 103 (293)
....|.++++++.+.++|.++||..|+++|.++|+.+.+|+|+++.+|||||||++|++|+++.+...+ .+++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 345788999999999999999999999999999999999999999999999999999999999886543 1468
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEec
Q 022724 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLD 182 (293)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViD 182 (293)
+|||+||++|+.|+.+.++.+.+..++++..++|+.+...+.+.+. +.++|+|+||++|..++..+...++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999999889999999999988777766664 568999999999999988888889999999999
Q ss_pred chhhhhccccHHHHHHHHhhCCC--CccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHH
Q 022724 183 ESDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (293)
Q Consensus 183 E~h~~~~~~~~~~~~~i~~~l~~--~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 260 (293)
|+|.+.+.++...+..+++.++. ..|++++|||++..+..+...++.++..+.+.........+.+.+..+.... |.
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-k~ 323 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD-KY 323 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh-HH
Confidence 99999999999999999988864 5799999999999999999999999988877766555566777777666655 88
Q ss_pred HHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 261 DTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 261 ~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+..++......++||||+++++|+.+++.|
T Consensus 324 ~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L 355 (475)
T PRK01297 324 KLLYNLVTQNPWERVMVFANRKDEVRRIEERL 355 (475)
T ss_pred HHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Confidence 88888888777789999999999999998765
No 18
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.6e-42 Score=309.94 Aligned_cols=263 Identities=65% Similarity=1.069 Sum_probs=237.1
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
+...+|+++++++.+.+++.++||..|+|+|.++|+.+.+|+|+++++|||+|||++|++|++..+.....+.++||++|
T Consensus 25 ~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 25 EIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999998876556779999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc
Q 022724 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
+++|+.|+.+.+..+....+..+..+.|+.....+...+.++++|+|+||+++.+++..+...++++++|||||+|++.+
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~ 184 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS 184 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh
Confidence 99999999999999988888888889999888777777878889999999999999988888899999999999999999
Q ss_pred cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhh
Q 022724 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (293)
Q Consensus 190 ~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~ 269 (293)
.++...+..+++.+++..|++++|||+++....+...++.++..+.+...+....++.+++..++....+...+..++..
T Consensus 185 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 264 (401)
T PTZ00424 185 RGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYET 264 (401)
T ss_pred cchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHh
Confidence 89988899999999999999999999999999998889988888877766666677888888777766677778888877
Q ss_pred CCCCcEEEEcccchhHHHHHhhC
Q 022724 270 LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 270 ~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
....++||||+++++|+.+++.|
T Consensus 265 ~~~~~~ivF~~t~~~~~~l~~~l 287 (401)
T PTZ00424 265 LTITQAIIYCNTRRKVDYLTKKM 287 (401)
T ss_pred cCCCeEEEEecCcHHHHHHHHHH
Confidence 77789999999999999998765
No 19
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-43 Score=304.45 Aligned_cols=261 Identities=29% Similarity=0.471 Sum_probs=239.9
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC----CceeEE
Q 022724 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQAL 105 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~----~~~~~l 105 (293)
..+..|.++||+....++|++.+|..+|.+|+.+||..+.|+|++..|.||||||+||++|+++.+...+ .|.-+|
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 3455899999999999999999999999999999999999999999999999999999999999986543 456799
Q ss_pred EEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEecch
Q 022724 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDES 184 (293)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-~~~~~~~l~~iViDE~ 184 (293)
|+.|||+||.|+++++.++++.++++...+.||.........+ ++++|+||||++|++.+.. ..++..++.++|+|||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 9999999999999999999999999999999999877766655 4679999999999998876 5678899999999999
Q ss_pred hhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecC--CcccCCCceEEEEEecCcccHHHH
Q 022724 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR--DELTLEGIKQFFVAVEREEWKFDT 262 (293)
Q Consensus 185 h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~k~~~ 262 (293)
|.+++.||...+..+++.+++..|.++||||.+..+.++++..+.+|..+.+.. ....|.++.|+|+.++... |+.+
T Consensus 225 DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~-Ki~~ 303 (758)
T KOG0343|consen 225 DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED-KIDM 303 (758)
T ss_pred HHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh-HHHH
Confidence 999999999999999999999999999999999999999999999999887763 3467888999999999888 9999
Q ss_pred HHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 263 LCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 263 l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
|-.+++.+...++|||+.|.+++..+++.+
T Consensus 304 L~sFI~shlk~K~iVF~SscKqvkf~~e~F 333 (758)
T KOG0343|consen 304 LWSFIKSHLKKKSIVFLSSCKQVKFLYEAF 333 (758)
T ss_pred HHHHHHhccccceEEEEehhhHHHHHHHHH
Confidence 999999999899999999999999998764
No 20
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.3e-42 Score=298.61 Aligned_cols=280 Identities=25% Similarity=0.384 Sum_probs=256.5
Q ss_pred CCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHH
Q 022724 13 GGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC 92 (293)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~ 92 (293)
..-..+-....++..-+.|+.+|++.+++.++++.+.+.||..|+|+|.+++|..++++|+|.++.||||||.+|++|++
T Consensus 225 ri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl 304 (673)
T KOG0333|consen 225 RIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLL 304 (673)
T ss_pred eeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHH
Confidence 33334445666788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC---------CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHH
Q 022724 93 QTVDTS---------SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC 163 (293)
Q Consensus 93 ~~l~~~---------~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~ 163 (293)
..+... ..||++++++||++|+.|+.+.-.++++.+++++..+.||.+.+++--.+..+|+|+|+||++|.
T Consensus 305 ~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLi 384 (673)
T KOG0333|consen 305 IWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLI 384 (673)
T ss_pred HHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHH
Confidence 877443 34789999999999999999999999999999999999999999888888899999999999999
Q ss_pred HHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCC-------------------------CccEEEEEeecCh
Q 022724 164 DMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-------------------------DLQVVLISATLPH 218 (293)
Q Consensus 164 ~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~-------------------------~~q~v~~SAt~~~ 218 (293)
..|.+..+.++++.++|+||||.|+|.+|..++..++..++. -.|.+.||||+|+
T Consensus 385 d~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p 464 (673)
T KOG0333|consen 385 DSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPP 464 (673)
T ss_pred HHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCCh
Confidence 999999999999999999999999999999999999999863 1689999999999
Q ss_pred hHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhCC
Q 022724 219 EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQFP 293 (293)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L~ 293 (293)
.+..+++.|+.+|..+.+.......+.+.|.+..+.... |...|..+++.....++|||+|+++.|+.+|+.|+
T Consensus 465 ~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~-k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~Le 538 (673)
T KOG0333|consen 465 AVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDE-KRKKLIEILESNFDPPIIIFVNTKKGADALAKILE 538 (673)
T ss_pred HHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchH-HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHh
Confidence 999999999999999999988888888999999888777 89999999998877899999999999999998763
No 21
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=288.16 Aligned_cols=261 Identities=31% Similarity=0.460 Sum_probs=237.2
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
...+|+.+|+++|+.+.++++|+..|||+|+.++|.|+.|+|.+-+|.||||||.+|.+|+++++..++.|..++|++||
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPT 84 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPT 84 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecch
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC----CCCCCCccEEEecchhh
Q 022724 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDE 186 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~----~~~~~~l~~iViDE~h~ 186 (293)
++|+-|+.+++..+++..++++..++||++.-.+...+..+++++|+||+++...+.++ ...+++++++|+||||.
T Consensus 85 rELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADr 164 (442)
T KOG0340|consen 85 RELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADR 164 (442)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999988775 34579999999999999
Q ss_pred hhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCC--CEEEEecCCcccCCCceEEEEEecCcccHHHHHH
Q 022724 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (293)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 264 (293)
+++.+|.+.+..+.+.+|...|.+++|||+++.+.++....... .......+....+..+.+.|+.++... |...+.
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-kdaYLv 243 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-KDAYLV 243 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh-hHHHHH
Confidence 99999999999999999999999999999999988887766665 344455555667778899999998877 888888
Q ss_pred HHHhhCC---CCcEEEEcccchhHHHHHhhC
Q 022724 265 DLYDTLT---ITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 265 ~l~~~~~---~~~~iIF~~s~~~a~~l~~~L 292 (293)
++++... .+.++||+|+..+|+.++..|
T Consensus 244 ~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l 274 (442)
T KOG0340|consen 244 HLLRDFENKENGSIMIFVNTTRECQLLSMTL 274 (442)
T ss_pred HHHhhhhhccCceEEEEeehhHHHHHHHHHH
Confidence 8887554 458999999999999998654
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-42 Score=301.68 Aligned_cols=280 Identities=30% Similarity=0.417 Sum_probs=250.0
Q ss_pred CCCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHH
Q 022724 12 GGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV 91 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~ 91 (293)
...+..+-........-|.++..|++-.+.+.+..+++..+|..|+|+|+.++|.+..|++++.||+||+|||.+|++|+
T Consensus 53 nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPi 132 (482)
T KOG0335|consen 53 NFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPI 132 (482)
T ss_pred ccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHH
Confidence 34445455556667777888889998899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCC----------CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHH
Q 022724 92 CQTVDTSS----------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGR 161 (293)
Q Consensus 92 ~~~l~~~~----------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~ 161 (293)
+..+.... ..|+++|++||++||.|++++.+++.-..+++....+|+.+...+.+.+.++|+|+|+||++
T Consensus 133 i~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGr 212 (482)
T KOG0335|consen 133 ISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGR 212 (482)
T ss_pred HHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCch
Confidence 99885542 35899999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCccEEEecchhhhhc-cccHHHHHHHHhhCCC----CccEEEEEeecChhHHHHHHhcCCC-CEEEE
Q 022724 162 VCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPP----DLQVVLISATLPHEILEMTTKFMTD-PVKIL 235 (293)
Q Consensus 162 l~~~l~~~~~~~~~l~~iViDE~h~~~~-~~~~~~~~~i~~~l~~----~~q~v~~SAt~~~~~~~~~~~~~~~-~~~~~ 235 (293)
|.+++..+.+.++++.++|+||||.|+| .+|..+++.++..... ..|.++||||+|..+..++..++.+ ...+.
T Consensus 213 L~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~la 292 (482)
T KOG0335|consen 213 LKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLA 292 (482)
T ss_pred hhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEE
Confidence 9999999999999999999999999999 8999999999998864 7899999999999999988888776 77788
Q ss_pred ecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCC----CC-----cEEEEcccchhHHHHHhhC
Q 022724 236 VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT----IT-----QAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 236 ~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~----~~-----~~iIF~~s~~~a~~l~~~L 292 (293)
+........++.|...++.+.. |...|.+++.... .+ +++|||.|++.|..++..|
T Consensus 293 V~rvg~~~~ni~q~i~~V~~~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l 357 (482)
T KOG0335|consen 293 VGRVGSTSENITQKILFVNEME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFL 357 (482)
T ss_pred EeeeccccccceeEeeeecchh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHH
Confidence 8888888999999999999888 7677766665322 23 8999999999999998876
No 23
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=293.18 Aligned_cols=271 Identities=30% Similarity=0.439 Sum_probs=253.3
Q ss_pred eeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC---
Q 022724 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--- 98 (293)
Q Consensus 22 ~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~--- 98 (293)
.+....++.++.+|+.++++..+..+..+..|++|||+|.+++|..++|++++-.|-||||||-+|++|++.++...
T Consensus 212 rv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL 291 (731)
T KOG0339|consen 212 RVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL 291 (731)
T ss_pred eeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred --CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 99 --SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 99 --~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
..+|..||++||++|+.|++..++++++..|++++.+|||.+..+|.+.+..++.|+|+||++|.++++-+..++.++
T Consensus 292 ~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 292 KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceee
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCc
Q 022724 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE 256 (293)
Q Consensus 177 ~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 256 (293)
.++|+||+|.|.+.||..+++.|...+++..|.++||||++..++.+++..+.+|+.+...........|.|.+..|...
T Consensus 372 S~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~ 451 (731)
T KOG0339|consen 372 SYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE 451 (731)
T ss_pred eEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999998887778888999999999999
Q ss_pred ccHHHHHH-HHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 257 EWKFDTLC-DLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 257 ~~k~~~l~-~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..|++-+. +|......+++|||+.....++.++..|
T Consensus 452 ~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~L 488 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANL 488 (731)
T ss_pred HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHh
Confidence 88888754 4555566679999999999999998876
No 24
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.5e-41 Score=290.46 Aligned_cols=262 Identities=27% Similarity=0.443 Sum_probs=235.1
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC----CCceeEE
Q 022724 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQAL 105 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~----~~~~~~l 105 (293)
.....|++..|++..+++++++||...|++|+..++.++.|+|+++.|-||+|||+||++|+++.+... +.+..++
T Consensus 79 ~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vl 158 (543)
T KOG0342|consen 79 TTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVL 158 (543)
T ss_pred hhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEE
Confidence 345578889999999999999999999999999999999999999999999999999999999988654 3456799
Q ss_pred EEcCCHHHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEecc
Q 022724 106 ILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDE 183 (293)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-~~~~~~~l~~iViDE 183 (293)
|+||||+|+.|++...+++.+.+ ++.+..+.||.......+.+..+++|+|+||++|...+.+ ..+-+++++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999999888 8999999999999988888888999999999999999988 446678889999999
Q ss_pred hhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCC-CCEEEEecCCc--ccCCCceEEEEEecCcccHH
Q 022724 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRDE--LTLEGIKQFFVAVEREEWKF 260 (293)
Q Consensus 184 ~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~k~ 260 (293)
||++++.+|...+..++..+++..|.+++|||.++.++++.+..+. +|..+.+.... .+..++.|.|+.++... ++
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f 317 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RF 317 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hH
Confidence 9999999999999999999999999999999999999999987766 47777776543 35677999899888777 68
Q ss_pred HHHHHHHhhCCC-CcEEEEcccchhHHHHHhhC
Q 022724 261 DTLCDLYDTLTI-TQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 261 ~~l~~l~~~~~~-~~~iIF~~s~~~a~~l~~~L 292 (293)
-.+..+++++.. .++||||.|...+..+++.|
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL 350 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELL 350 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHH
Confidence 888888888776 79999999999999988765
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=285.93 Aligned_cols=263 Identities=29% Similarity=0.466 Sum_probs=235.9
Q ss_pred CCccccCccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC------CC
Q 022724 28 GVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SR 100 (293)
Q Consensus 28 ~~~~~~~f~~-~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~------~~ 100 (293)
.|.|.-+|++ +.-.+++..++++.||.+|+|+|+++||.+++|.|++.++.||+|||++|++|.+.++... ..
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 5777888887 5788999999999999999999999999999999999999999999999999988777443 45
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEE
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iV 180 (293)
++.+|++.|+++|+.|+.-.+.++. .-|+...+++|+.+...+.+.+..+.+|+++||++|..+...+.+++..+.|+|
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlV 372 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLV 372 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEE
Confidence 7899999999999999998887764 457888899999999999999999999999999999999999999999999999
Q ss_pred ecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCccc-CCCceEEEEEecCcccH
Q 022724 181 LDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT-LEGIKQFFVAVEREEWK 259 (293)
Q Consensus 181 iDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~k 259 (293)
+||||.|++.+|..++..++-.+++..|.++.|||||+.+..+...|+.+|..+.+...+.. ...+.|++ .+..+..|
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k 451 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEK 451 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHH
Confidence 99999999999999999999999999999999999999999999999999999998877654 46677777 56666669
Q ss_pred HHHHHHHHhhCCC-CcEEEEcccchhHHHHHhhC
Q 022724 260 FDTLCDLYDTLTI-TQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 260 ~~~l~~l~~~~~~-~~~iIF~~s~~~a~~l~~~L 292 (293)
...+..+++.... .++||||.++..|+.+...|
T Consensus 452 ~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~ 485 (629)
T KOG0336|consen 452 LEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDF 485 (629)
T ss_pred HHHHHHHHHhcCCCceEEEEEechhhhhhccchh
Confidence 9999998887654 59999999999998887654
No 26
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-41 Score=280.50 Aligned_cols=283 Identities=35% Similarity=0.565 Sum_probs=250.5
Q ss_pred hhhhhHHhCCCCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC--CcEEEEcCCC
Q 022724 3 AATAMRRRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSG 80 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~Tg 80 (293)
+.+++.+.-.+.+.... +.+++..+..+|++|+|.|+++++++.|+|.+|+.+|..++|.++.. +|++.++.+|
T Consensus 64 ~~~~ll~~~~~~~vk~~----dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsG 139 (477)
T KOG0332|consen 64 ADSSLLNKFIESNVKLA----DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSG 139 (477)
T ss_pred chhhhhcchhhhceeec----CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCC
Confidence 34455554444444333 37788889999999999999999999999999999999999999865 7999999999
Q ss_pred ChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChH
Q 022724 81 TGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPG 160 (293)
Q Consensus 81 ~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~ 160 (293)
+|||.||.+.++.++...-..|+++.|+|+++||.|+.+.+.++++..++...+...+....+... + ..+|+|+||+
T Consensus 140 tGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~-i--~eqIviGTPG 216 (477)
T KOG0332|consen 140 TGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNK-L--TEQIVIGTPG 216 (477)
T ss_pred CchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCc-c--hhheeeCCCc
Confidence 999999999999999988888999999999999999999999999999888877776652222111 1 1379999999
Q ss_pred HHHHHHhc-CCCCCCCccEEEecchhhhhcc-ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecC
Q 022724 161 RVCDMIKR-KTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (293)
Q Consensus 161 ~l~~~l~~-~~~~~~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~ 238 (293)
.+.+++.. ..+++..++.+|+||||.|++. ||.++-..+.+.+++++|++++|||+.+.+..+.....+++-.+....
T Consensus 217 tv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~ 296 (477)
T KOG0332|consen 217 TVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKR 296 (477)
T ss_pred cHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeeh
Confidence 99998877 8889999999999999999765 799999999999999999999999999999999999999999999999
Q ss_pred CcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 239 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+....+|.|+|..|..+++|++.+..++.....++.||||.|++.|.+++..|
T Consensus 297 eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m 350 (477)
T KOG0332|consen 297 EELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEM 350 (477)
T ss_pred hhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHH
Confidence 999999999999999999999999999998888899999999999999999865
No 27
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-40 Score=277.01 Aligned_cols=261 Identities=62% Similarity=1.008 Sum_probs=243.9
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 29 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
.+.+.+|++++|++.+++.++..||++|+.+|+.|+..+.+|.|+.+.+++|+|||.+|.+++++.+.......++++++
T Consensus 22 ~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalila 101 (397)
T KOG0327|consen 22 NEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILA 101 (397)
T ss_pred HHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhc
Confidence 45577999999999999999999999999999999999999999999999999999999999999998887888999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
|+++|+.|+..+...++...+.++..+.|+.....+...+ ...++|+|+||+++.+++..+.+..+.++++|+||+|.+
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEm 181 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEM 181 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhh
Confidence 9999999999999999999999999999998877555444 456899999999999999999888889999999999999
Q ss_pred hccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHH
Q 022724 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 267 (293)
+..++.+++..++..++++.|++++|||.|.++....+.++.+|..+.+...+.+...+.|+++.+..++ |+..+..++
T Consensus 182 Ls~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~dl~ 260 (397)
T KOG0327|consen 182 LSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCDLY 260 (397)
T ss_pred hccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999889999999999999888 999999999
Q ss_pred hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 268 DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 268 ~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+ .-.+.+||||+++.+..+...|
T Consensus 261 ~--~~~q~~if~nt~r~v~~l~~~L 283 (397)
T KOG0327|consen 261 R--RVTQAVIFCNTRRKVDNLTDKL 283 (397)
T ss_pred H--hhhcceEEecchhhHHHHHHHH
Confidence 8 5569999999999999887664
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=282.34 Aligned_cols=270 Identities=26% Similarity=0.429 Sum_probs=223.4
Q ss_pred eeecccCCccccCcccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhcc---
Q 022724 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT--- 97 (293)
Q Consensus 22 ~~~~~~~~~~~~~f~~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~--- 97 (293)
..+..+.+-....|.++++++.+.+.|+. +++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+..
T Consensus 125 vk~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ 204 (708)
T KOG0348|consen 125 VKQVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP 204 (708)
T ss_pred hccccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCc
Confidence 33444455567789999999999999974 79999999999999999999999999999999999999999998843
Q ss_pred ---CCCceeEEEEcCCHHHHHHHHHHHHHhhccCC-ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCC
Q 022724 98 ---SSREVQALILSPTRELATQTEKVILAIGDFIN-IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLR 172 (293)
Q Consensus 98 ---~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-~~~~ 172 (293)
...|+.++|++||||||.|+++.++++.+.+. +-.+.+.||.....+...+.++++|+|+||++|++.+.+ ..+.
T Consensus 205 ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~ 284 (708)
T KOG0348|consen 205 KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIK 284 (708)
T ss_pred cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchhe
Confidence 34678999999999999999999999887654 334567888888888888999999999999999998877 6688
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCC-------------CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCC
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-------------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~-------------~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~ 239 (293)
++++.++|+||+|.+++.||...+..|++.+. ...|-+++|||+++.+..+....+.||..+..+..
T Consensus 285 ~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s 364 (708)
T KOG0348|consen 285 FSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKS 364 (708)
T ss_pred eeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccch
Confidence 99999999999999999999999999888872 13688999999999999999999999998872210
Q ss_pred -------------------------cccCCCceEEEEEecCcccHHHHHHHHHh----hCCCCcEEEEcccchhHHHHHh
Q 022724 240 -------------------------ELTLEGIKQFFVAVEREEWKFDTLCDLYD----TLTITQAVIFCNTKRKVLLLVL 290 (293)
Q Consensus 240 -------------------------~~~~~~i~~~~~~~~~~~~k~~~l~~l~~----~~~~~~~iIF~~s~~~a~~l~~ 290 (293)
...+.++.|.|..++..- .+..|..++. .....++|||..+.+.++.=+.
T Consensus 365 ~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL-RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~ 443 (708)
T KOG0348|consen 365 HSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL-RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYS 443 (708)
T ss_pred hhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCch-hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHH
Confidence 123445667777777666 5555555553 3344599999999999887665
Q ss_pred hC
Q 022724 291 QF 292 (293)
Q Consensus 291 ~L 292 (293)
.|
T Consensus 444 lf 445 (708)
T KOG0348|consen 444 LF 445 (708)
T ss_pred HH
Confidence 54
No 29
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=302.42 Aligned_cols=272 Identities=31% Similarity=0.508 Sum_probs=249.5
Q ss_pred ceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC--
Q 022724 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-- 98 (293)
Q Consensus 21 ~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-- 98 (293)
..+.+..-+.|+.+|...|++..++..++++||..|+|+|.+|||+|++|+++|.+|-||||||++|++|++.++...
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 677888889999999999999999999999999999999999999999999999999999999999999999776432
Q ss_pred ---CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC---CC
Q 022724 99 ---SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LR 172 (293)
Q Consensus 99 ---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~---~~ 172 (293)
..||-+||++||++|+.|+.+.++.+.+.+++++++++|+....+++..+++++.|+||||++...++-.+. ..
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 358999999999999999999999999999999999999999999999999999999999999999775543 34
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (293)
+.++.++|+||+|.|.+.+|..++..|+..+++..|.+++|||+|..+..+....+..|..+.+.........+.|.+..
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V 592 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRV 592 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEE
Confidence 56667999999999999999999999999999999999999999999999999999999999998777777889999999
Q ss_pred ecCcccHHHHHHHHHhhC-CCCcEEEEcccchhHHHHHhhC
Q 022724 253 VEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 253 ~~~~~~k~~~l~~l~~~~-~~~~~iIF~~s~~~a~~l~~~L 292 (293)
++.+..|+..|.+++... ...++||||.+.+.|..+.+.|
T Consensus 593 ~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L 633 (997)
T KOG0334|consen 593 CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDL 633 (997)
T ss_pred ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHH
Confidence 997777999999999754 4569999999999999998766
No 30
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4e-41 Score=281.80 Aligned_cols=270 Identities=30% Similarity=0.474 Sum_probs=245.1
Q ss_pred ceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhc----
Q 022724 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD---- 96 (293)
Q Consensus 21 ~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~---- 96 (293)
..+++...|.|+.+|.++.++..+++.|++.|+.+|||+|.+-+|.+++|+|.+-.|-||||||+.|.+|++....
T Consensus 158 I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~ 237 (610)
T KOG0341|consen 158 ILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM 237 (610)
T ss_pred EEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh
Confidence 3457888899999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ----cCCCceeEEEEcCCHHHHHHHHHHHHHhhccC------CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHH
Q 022724 97 ----TSSREVQALILSPTRELATQTEKVILAIGDFI------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI 166 (293)
Q Consensus 97 ----~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l 166 (293)
....||..+|+||+|+|+.|+++.+..+...+ .++...+.||.+..++...+..+.+|+|+||++|.++|
T Consensus 238 ~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL 317 (610)
T KOG0341|consen 238 MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDML 317 (610)
T ss_pred cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHH
Confidence 23468899999999999999999988765333 46888999999999999999999999999999999999
Q ss_pred hcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCc
Q 022724 167 KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGI 246 (293)
Q Consensus 167 ~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (293)
.....++.-+.++++||||+|.+.+|..+++.++..+...+|.++||||+|..+..+++..+-.|..+++.+.....-++
T Consensus 318 ~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldV 397 (610)
T KOG0341|consen 318 AKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDV 397 (610)
T ss_pred HHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777778
Q ss_pred eEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 247 KQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 247 ~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.|.+.++..+. |+..+.+.+++.+ .+++|||..+.+++.++++|
T Consensus 398 iQevEyVkqEa-KiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYL 441 (610)
T KOG0341|consen 398 IQEVEYVKQEA-KIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYL 441 (610)
T ss_pred HHHHHHHHhhh-hhhhHHHHhccCC-CceEEEeccccChHHHHHHH
Confidence 88887787777 8888888776654 59999999999999998875
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-39 Score=272.79 Aligned_cols=260 Identities=31% Similarity=0.498 Sum_probs=237.8
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC-CceeEEEEcCC
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPT 110 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-~~~~~lil~P~ 110 (293)
..+|..++|+..+.+++.+.||..|+|+|+..+|.++++++++-.+-||||||.||++|+++++.... .|.|++++.|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999987653 56799999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
++|+.|+.+..+.+++.++++..+++|+.+..++...+..++|||++||+++.++.-.-.+.++.+.|+|+||+|.+.+.
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999988999999999999988777788999999999999999999
Q ss_pred ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhC
Q 022724 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (293)
Q Consensus 191 ~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~ 270 (293)
||.+++..++++++...|.++||||+|..+.++.+..+.+|..+..+-...........+..+...+ |...|..++...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~-K~aaLl~il~~~ 258 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE-KEAALLSILGGR 258 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH-HHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999987765555556666677677666 999999998765
Q ss_pred C-CCcEEEEcccchhHHHHHhhC
Q 022724 271 T-ITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 271 ~-~~~~iIF~~s~~~a~~l~~~L 292 (293)
. ..+++|||.|...++.+...|
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll 281 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLL 281 (529)
T ss_pred ccccceeEEecccchHHHHHHHH
Confidence 4 459999999999999887643
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-39 Score=279.00 Aligned_cols=265 Identities=26% Similarity=0.423 Sum_probs=222.3
Q ss_pred ccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC-CcEEEEcCCCChhHHHHHHHHHhhhccC------
Q 022724 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTS------ 98 (293)
Q Consensus 26 ~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~------ 98 (293)
+.....++-|..|+++.+++++|..+||..||++|...+|+...| .|++.-|.||||||+||-+|+++.+...
T Consensus 174 ~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e 253 (731)
T KOG0347|consen 174 DSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQE 253 (731)
T ss_pred cccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhh
Confidence 334455778999999999999999999999999999999999988 6999999999999999999999965432
Q ss_pred -----CCcee--EEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC-
Q 022724 99 -----SREVQ--ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT- 170 (293)
Q Consensus 99 -----~~~~~--~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~- 170 (293)
..+++ ++|++|||+||.|+...+..+....++++..+.||.....|.+.+...++|+|+||++|+.++..+.
T Consensus 254 ~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~ 333 (731)
T KOG0347|consen 254 LSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT 333 (731)
T ss_pred hhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh
Confidence 12344 9999999999999999999999999999999999999999999999999999999999999997743
Q ss_pred --CCCCCccEEEecchhhhhccccHHHHHHHHhhCC-----CCccEEEEEeecChh---------------------HHH
Q 022724 171 --LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-----PDLQVVLISATLPHE---------------------ILE 222 (293)
Q Consensus 171 --~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~-----~~~q~v~~SAt~~~~---------------------~~~ 222 (293)
-.++++.++|+||+|+|.+.|+...+..++..+. ...|.+.+|||++-. +..
T Consensus 334 ~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~ 413 (731)
T KOG0347|consen 334 HLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQH 413 (731)
T ss_pred hhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHH
Confidence 4678899999999999999998888888888775 457999999998432 122
Q ss_pred HHHh--cCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 223 MTTK--FMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 223 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
++.. +...|..+...+.......+....+.|+..+ |.-.+.+++..++ +++|||||+++.+.+++..|
T Consensus 414 Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e-KD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L 483 (731)
T KOG0347|consen 414 LMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLE-KDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLL 483 (731)
T ss_pred HHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccc-cceeEEEEEeecC-CceEEEechHHHHHHHHHHH
Confidence 2222 2345677777777667777777788886665 7767777776665 79999999999999998765
No 33
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.4e-38 Score=277.90 Aligned_cols=263 Identities=29% Similarity=0.526 Sum_probs=242.8
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
.....|+++.+...++..|+..+|..|+++|..|||+++.+.|+||.+-.|+|||++|...+++.+......++++|++|
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 34578999999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred CHHHHHHHHHHHHHhhcc-CCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 110 TRELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
||+++-|+.+.+.+++.. .|+++..+.||+........++ .++|+||||+++.+++..+.++.++++++|+||||.++
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~ 180 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLM 180 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhh
Confidence 999999999999998864 5899999999998877766664 46899999999999999999999999999999999998
Q ss_pred c-cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcc-------cHH
Q 022724 189 S-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE-------WKF 260 (293)
Q Consensus 189 ~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~k~ 260 (293)
+ ..|..++..++..++...|++++|||.|..+.+.+.++|.+|..+..+..+...-++.|++......+ .|.
T Consensus 181 ~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 181 DTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred chhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHH
Confidence 8 57999999999999999999999999999999999999999999999999888999999998877653 377
Q ss_pred HHHHHHHhhCCCCcEEEEcccchhHHHHHhhCC
Q 022724 261 DTLCDLYDTLTITQAVIFCNTKRKVLLLVLQFP 293 (293)
Q Consensus 261 ~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L~ 293 (293)
+.|.+++...+-.++||||+....|+.++..|.
T Consensus 261 q~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ 293 (980)
T KOG4284|consen 261 QKLTHVFKSIPYVQALVFCDQISRAEPIATHLK 293 (980)
T ss_pred HHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhh
Confidence 788889999888899999999999999998773
No 34
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=5.6e-36 Score=244.42 Aligned_cols=200 Identities=47% Similarity=0.812 Sum_probs=184.7
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC--CCceeEEEEcCCHH
Q 022724 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRE 112 (293)
Q Consensus 35 f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~--~~~~~~lil~P~~~ 112 (293)
|+++++++.+.+.+.++|++.|+++|+++++.+.+|+|+++++|||+|||++|++|+++.+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 7899999999999999999999999999999999999999999999999999999999998876 56789999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc
Q 022724 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (293)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~ 192 (293)
|+.|+...++.+....++.+..++|+.+.......+.++++|+|+||+++..++.++...+.+++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999988888899999999887777666766889999999999999988888889999999999999988888
Q ss_pred HHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEE
Q 022724 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 234 (293)
Q Consensus 193 ~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~ 234 (293)
...+..+.+.++..+|++++|||+++....++..++.+|..+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999899999999999999999998888887665
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.2e-36 Score=283.56 Aligned_cols=244 Identities=20% Similarity=0.243 Sum_probs=185.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 119 (293)
+++++.++|++.||..|+++|.++++.+.+|+|+++++|||||||+||++|+++.+... .+.++|||+|+++|+.|+.+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLR 99 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999998764 35799999999999999999
Q ss_pred HHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHH-hcC---CCCCCCccEEEecchhhhhccccHHH
Q 022724 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI-KRK---TLRTRAIKLLVLDESDEMLSRGFKDQ 195 (293)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l-~~~---~~~~~~l~~iViDE~h~~~~~~~~~~ 195 (293)
.++.+. ..++++..+.|+.+.. +.+.+.++++|+|+||+.+...+ ... ...++++++|||||+|.+.+ .|+..
T Consensus 100 ~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~ 176 (742)
T TIGR03817 100 AVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSH 176 (742)
T ss_pred HHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHH
Confidence 999987 4578888888877654 44556667899999999997533 221 12378999999999999865 35555
Q ss_pred HHHHHhh-------CCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecC-------------
Q 022724 196 IYDVYRY-------LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER------------- 255 (293)
Q Consensus 196 ~~~i~~~-------l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------- 255 (293)
+..++++ .+...|++++|||+++... .+..++..+..+. ... ..+....+.....+.
T Consensus 177 ~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~r 253 (742)
T TIGR03817 177 VALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TED-GSPRGARTVALWEPPLTELTGENGAPVR 253 (742)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCC-CCCcCceEEEEecCCccccccccccccc
Confidence 4444333 4567899999999998754 5677777775543 222 222222223222221
Q ss_pred ---cccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 256 ---EEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 256 ---~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...+...+..+++. +.++||||||++.|+.++..|
T Consensus 254 ~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l 291 (742)
T TIGR03817 254 RSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIA 291 (742)
T ss_pred cchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHH
Confidence 01244456666653 569999999999999998764
No 36
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-37 Score=244.47 Aligned_cols=252 Identities=35% Similarity=0.615 Sum_probs=233.5
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
.+.|.++-|.+++++++-++||..|+..|.+++|...-|.|++..|.+|.|||..|.++-++.+...+....++++|++|
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtr 120 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTR 120 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccH
Confidence 45799999999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
+|+-|+.....++.+.. ++++...+||.+.......+.+.++|+|+||++++.+.+++.+++++++.+|+||+|.|++.
T Consensus 121 elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~ 200 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQ 200 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHH
Confidence 99999999998887776 68999999999999888889899999999999999999999999999999999999998865
Q ss_pred -ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCc-ccCCCceEEEEEecCcccHHHHHHHHHh
Q 022724 191 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (293)
Q Consensus 191 -~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 268 (293)
..+.++..+.+..+...|++.+|||++.++...++++|.+|..+.++... ....++.|+|....+.+ |...+.++++
T Consensus 201 lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd 279 (387)
T KOG0329|consen 201 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLD 279 (387)
T ss_pred HHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhh
Confidence 67889999999999999999999999999999999999999999887653 46788999999998887 8888888888
Q ss_pred hCCCCcEEEEcccchh
Q 022724 269 TLTITQAVIFCNTKRK 284 (293)
Q Consensus 269 ~~~~~~~iIF~~s~~~ 284 (293)
....++++||+.++..
T Consensus 280 ~LeFNQVvIFvKsv~R 295 (387)
T KOG0329|consen 280 VLEFNQVVIFVKSVQR 295 (387)
T ss_pred hhhhcceeEeeehhhh
Confidence 8888899999999876
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.7e-35 Score=280.46 Aligned_cols=248 Identities=18% Similarity=0.248 Sum_probs=183.8
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 34 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
.|+++++++++.+.+++.||..|+|+|.++++. +.+|+|+++++|||+|||++|.+|++..+.. +.++||++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 588999999999999999999999999999998 7789999999999999999999999998863 568999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc
Q 022724 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (293)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~ 192 (293)
|+.|+++.++++.. .++++..++|+...... ....++|+|+||+++..+++++...+++++++|+||+|++.+.++
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999998653 58899889888754432 224579999999999999987666688999999999999988888
Q ss_pred HHHHHHHHhhC---CCCccEEEEEeecChhHHHHHHhcCCC-------CEEE--EecCCcc-cCCCceEEEEEecCcccH
Q 022724 193 KDQIYDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTD-------PVKI--LVKRDEL-TLEGIKQFFVAVEREEWK 259 (293)
Q Consensus 193 ~~~~~~i~~~l---~~~~q~v~~SAt~~~~~~~~~~~~~~~-------~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~k 259 (293)
+..++.++.++ .+..|+|++|||+++. .++..+.... |..+ .+..... .... .+...........
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 232 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDDT 232 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchHH
Confidence 87777766554 4678999999999763 3344333211 1111 0000000 0000 0111111111112
Q ss_pred HHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 260 FDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 260 ~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...+...+. .++++||||+|+++|+.++..|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L 263 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRA 263 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHH
Confidence 333333333 4579999999999999988765
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-34 Score=276.45 Aligned_cols=245 Identities=16% Similarity=0.201 Sum_probs=188.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 34 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
+|+++++++.+.+.+++.||..|+|+|.++++. +.+|+|+++++|||+|||++|.+|++..+... +.++||++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 578999999999999999999999999999996 78999999999999999999999999887653 458999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc
Q 022724 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (293)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~ 192 (293)
|+.|+++.++.+. ..++++..++|+.+.... ....++|+|+||+++..+++.+...++++++||+||+|.+.+.++
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998864 468899999988764432 234579999999999999887766789999999999999988888
Q ss_pred HHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCce-----EEEEEecCcc-c-----HHH
Q 022724 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIK-----QFFVAVEREE-W-----KFD 261 (293)
Q Consensus 193 ~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~-~-----k~~ 261 (293)
+..+..+++.+....|+|++|||+++. .++..++.... +... ..+..+. +.+....... . ...
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n~-~~la~wl~~~~--~~~~---~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGNA-EELAEWLNAEL--VVSD---WRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHHhCCcc--ccCC---CCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 999999999998899999999999863 55555432221 1111 1111111 1111111111 0 112
Q ss_pred HHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 262 TLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 262 ~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+.+.++ .++++||||+|++.|+.++..|
T Consensus 230 ~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l 258 (720)
T PRK00254 230 LVYDAVK--KGKGALVFVNTRRSAEKEALEL 258 (720)
T ss_pred HHHHHHH--hCCCEEEEEcChHHHHHHHHHH
Confidence 2333343 3579999999999999887554
No 39
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=247.52 Aligned_cols=260 Identities=20% Similarity=0.329 Sum_probs=209.9
Q ss_pred ccCcccCCCCHHHH----------HHHHHCCCCCCcHHHHHHHHhhh---------cCCcEEEEcCCCChhHHHHHHHHH
Q 022724 32 ITSFDAMGIKDDLL----------RGIYQYGFEKPSAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMIALTVC 92 (293)
Q Consensus 32 ~~~f~~~~l~~~i~----------~~l~~~~~~~~~~~Q~~~~~~i~---------~~~~~li~~~Tg~GKT~~~~~~~~ 92 (293)
...|+.++++.... +++.++++....|+|..++|.++ .++|+.|.||||||||+||.+|++
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 34567776665443 44888999999999999999885 257999999999999999999999
Q ss_pred hhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcC-----CcEEEeChHHHHHHH
Q 022724 93 QTVDTSS-REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-----VHVVSGTPGRVCDMI 166 (293)
Q Consensus 93 ~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ilV~Tp~~l~~~l 166 (293)
+.+...+ +..|+||++|+++|+.|+++.+.++....|+.|+.+.|..+..++.+.+.+. .||+|+||++|.+.+
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 9987763 3479999999999999999999999999999999999999988888877532 389999999999999
Q ss_pred hc-CCCCCCCccEEEecchhhhhccccHHHHHHHHhhC----------------------------------CCCccEEE
Q 022724 167 KR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL----------------------------------PPDLQVVL 211 (293)
Q Consensus 167 ~~-~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l----------------------------------~~~~q~v~ 211 (293)
++ ..++++++.|+||||||++++..|..-+..+...+ .+..+.++
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 85 78999999999999999998765443332222221 12346888
Q ss_pred EEeecChhHHHHHHhcCCCCEEEEec----CCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHH
Q 022724 212 ISATLPHEILEMTTKFMTDPVKILVK----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLL 287 (293)
Q Consensus 212 ~SAt~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~ 287 (293)
+|||++.+-..+...-+..|..+.+. .....+..+.++++.++... |.-.+..++......++|+|+|+.+.+.+
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~-kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKF-KPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccccc-chHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 99999777666666666677555554 23455667888888887766 78888899999999999999999999999
Q ss_pred HHhhC
Q 022724 288 LVLQF 292 (293)
Q Consensus 288 l~~~L 292 (293)
++..|
T Consensus 445 l~~~L 449 (620)
T KOG0350|consen 445 LAHVL 449 (620)
T ss_pred HHHHH
Confidence 98765
No 40
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1e-33 Score=263.66 Aligned_cols=246 Identities=18% Similarity=0.220 Sum_probs=192.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC-----CCceeEEEEcCCHHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SREVQALILSPTRELA 114 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-----~~~~~~lil~P~~~l~ 114 (293)
+++.+.+.+++. |..||+.|.+|||.+.+|+|++++||||||||+++.+|++..+... ..+..+||++|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 689999999987 9999999999999999999999999999999999999999998766 3457899999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC--CCCCCccEEEecchhhhhcccc
Q 022724 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGF 192 (293)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~--~~~~~l~~iViDE~h~~~~~~~ 192 (293)
+++.+.++.+....|+.+...+|+++..+..+...+++||+|+||+.|.-++.... -.+.++.++||||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999999999999888888889999999999999998886632 3479999999999999987766
Q ss_pred HHHHHHHHhhCC---CCccEEEEEeecChhHHHHHHhcCCC--CEEEEecCCcccCCCceEEEEEecCc--------ccH
Q 022724 193 KDQIYDVYRYLP---PDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVAVERE--------EWK 259 (293)
Q Consensus 193 ~~~~~~i~~~l~---~~~q~v~~SAt~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~k 259 (293)
+.++...+.++. ...|.|++|||+.+. ....+++.+. +..+..... .....+ .+...... ..-
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~-~k~~~i--~v~~p~~~~~~~~~~~~~~ 242 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSA-AKKLEI--KVISPVEDLIYDEELWAAL 242 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEccc-CCcceE--EEEecCCccccccchhHHH
Confidence 665544333332 389999999999743 5555555544 333333222 222222 22222111 112
Q ss_pred HHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 260 FDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 260 ~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+..+.++++++. .++||+||+..|+.++..|
T Consensus 243 ~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L 273 (814)
T COG1201 243 YERIAELVKKHR--TTLIFTNTRSGAERLAFRL 273 (814)
T ss_pred HHHHHHHHhhcC--cEEEEEeChHHHHHHHHHH
Confidence 444555666654 9999999999999998765
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.6e-32 Score=255.55 Aligned_cols=237 Identities=20% Similarity=0.245 Sum_probs=179.5
Q ss_pred HHHHH-CCCCCCcHHHHHHHHhhhcCC-cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEE-EcCCHHHHHHHHHHHH
Q 022724 46 RGIYQ-YGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI-LSPTRELATQTEKVIL 122 (293)
Q Consensus 46 ~~l~~-~~~~~~~~~Q~~~~~~i~~~~-~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~li-l~P~~~l~~q~~~~~~ 122 (293)
+.+++ .||+ |+|+|.++++.++.|+ ++++.+|||||||.++.++++.. ......++.+| ++|+++|+.|+++.++
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHH
Confidence 34443 5888 9999999999999998 67788999999998766555432 22233455555 7799999999999999
Q ss_pred HhhccC-----------------------CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC--------
Q 022724 123 AIGDFI-----------------------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-------- 171 (293)
Q Consensus 123 ~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~-------- 171 (293)
++.+.+ ++++..++||.+...+...+..+++|+|+|++.+. ++.+
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~----sr~L~~gYg~~~ 159 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG----SRLLFSGYGCGF 159 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc----CCcccccccccc
Confidence 988755 47889999999999999999999999999975443 3333
Q ss_pred --------CCCCccEEEecchhhhhccccHHHHHHHHhhC--CC---CccEEEEEeecChhHHHHHHhcCCCCEEEEecC
Q 022724 172 --------RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PP---DLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (293)
Q Consensus 172 --------~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l--~~---~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~ 238 (293)
.+.++++||+|||| ++.+|...+..+++.+ ++ ..|+++||||++.++......++.++..+.+..
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~ 237 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK 237 (844)
T ss_pred ccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc
Confidence 26889999999999 5788999999999975 33 269999999999988888777777777666655
Q ss_pred CcccCCCceEEEEEecCcccHHHHHHHHH---hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 239 DELTLEGIKQFFVAVEREEWKFDTLCDLY---DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~k~~~l~~l~---~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
......++.++ ..++.+. |...+...+ ....++++||||||+++|+.+++.|
T Consensus 238 ~~l~a~ki~q~-v~v~~e~-Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L 292 (844)
T TIGR02621 238 KRLAAKKIVKL-VPPSDEK-FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKL 292 (844)
T ss_pred ccccccceEEE-EecChHH-HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHH
Confidence 55555566664 3333332 443322221 1234579999999999999999876
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.3e-32 Score=263.94 Aligned_cols=248 Identities=19% Similarity=0.243 Sum_probs=174.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC------CCceeEEEEcCCHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTREL 113 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~------~~~~~~lil~P~~~l 113 (293)
+++.+.+.+.+ +|..|+|+|.++|+.+.+|+|+++++|||||||++|.+|+++.+... ..+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 57778887776 78999999999999999999999999999999999999999887532 245789999999999
Q ss_pred HHHHHHHHHH-------hh----ccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC--CCCCccEE
Q 022724 114 ATQTEKVILA-------IG----DFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLL 179 (293)
Q Consensus 114 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~--~~~~l~~i 179 (293)
+.|+.+.+.. +. ... ++++...+|+.+.....+.+.++++|+|+||+++..++.+..+ .++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886652 21 222 6788889999988877777778899999999999888766443 47899999
Q ss_pred EecchhhhhccccHHHHHHH----HhhCCCCccEEEEEeecChhHHHHHHhcCC-------CCEEEEecCCcccCCCceE
Q 022724 180 VLDESDEMLSRGFKDQIYDV----YRYLPPDLQVVLISATLPHEILEMTTKFMT-------DPVKILVKRDELTLEGIKQ 248 (293)
Q Consensus 180 ViDE~h~~~~~~~~~~~~~i----~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~ 248 (293)
||||+|.+.+..++..+... ....+...|++++|||+++. .....+... .+..+. .........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEEE
Confidence 99999999877666554443 33334678999999999762 333332221 122221 111111111110
Q ss_pred E-----EEEecCcc---cHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 249 F-----FVAVEREE---WKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 249 ~-----~~~~~~~~---~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
. ........ .....+..+++ .++++||||||++.|+.++..|
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L 304 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNL 304 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHH
Confidence 0 00011111 11222333333 2469999999999999998765
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-32 Score=260.06 Aligned_cols=245 Identities=17% Similarity=0.210 Sum_probs=181.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 34 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
.|+++++++.+.+.+.+.+|. ++++|.++++.+.+|+|+++++|||+|||+++.++++..+.. +.++||++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHH
Confidence 578899999999999998887 999999999999999999999999999999999999988765 4589999999999
Q ss_pred HHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccH
Q 022724 114 ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (293)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~ 193 (293)
+.|+++.++++. ..|.++....|+...... ....++|+|+||+++..++++....+++++++|+||+|++.+.+++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998864 467888888887654322 2245799999999999988877666899999999999999887777
Q ss_pred HHHHHHHhh---CCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEE-----EecCcccHHHHHHH
Q 022724 194 DQIYDVYRY---LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV-----AVEREEWKFDTLCD 265 (293)
Q Consensus 194 ~~~~~i~~~---l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~k~~~l~~ 265 (293)
..++.++.. +++..|+|++|||+++. .++..++.... +... ..+..+..... ..+........+..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~~~--~~~~---~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNASL--IKSN---FRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCCCc--cCCC---CCCCCeEEEEEecCeeeecccccccccHHH
Confidence 777666544 45688999999999764 45554432211 1100 11111111110 11111101111223
Q ss_pred HHhh--CCCCcEEEEcccchhHHHHHhhC
Q 022724 266 LYDT--LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 266 l~~~--~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
++.. ..++++||||+++++|+.++..|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L 256 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEML 256 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHH
Confidence 3332 24579999999999999998765
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-33 Score=242.91 Aligned_cols=272 Identities=25% Similarity=0.341 Sum_probs=234.1
Q ss_pred ceeecccCCccccCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhc
Q 022724 21 MVFETTEGVEAITSFDAM----GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (293)
Q Consensus 21 ~~~~~~~~~~~~~~f~~~----~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~ 96 (293)
..+.+...+.++.+|.++ ..++.+++++...+|..|+|+|.+++|.++.+++++.|+|||+|||++|.+|++.++.
T Consensus 120 ~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~ 199 (593)
T KOG0344|consen 120 INVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLK 199 (593)
T ss_pred eeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHH
Confidence 344566778889999984 5788999999999999999999999999999999999999999999999999999885
Q ss_pred cC-----CCceeEEEEcCCHHHHHHHHHHHHHhh--ccCCceEEEEECCcchHH-HHHHHhcCCcEEEeChHHHHHHHhc
Q 022724 97 TS-----SREVQALILSPTRELATQTEKVILAIG--DFINIQAHACVGGKSVGE-DIRKLEHGVHVVSGTPGRVCDMIKR 168 (293)
Q Consensus 97 ~~-----~~~~~~lil~P~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ilV~Tp~~l~~~l~~ 168 (293)
.. ..|.+++|+.|+++|+.|++..+.++. ...+.++..........+ ........++++|+||.++...+..
T Consensus 200 ~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~ 279 (593)
T KOG0344|consen 200 DLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGL 279 (593)
T ss_pred HhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcC
Confidence 43 457899999999999999999999998 555555554443322111 1112223468999999999999888
Q ss_pred CC--CCCCCccEEEecchhhhhcc-ccHHHHHHHHhhCC-CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCC
Q 022724 169 KT--LRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLE 244 (293)
Q Consensus 169 ~~--~~~~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~-~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (293)
+. +++..+.++|+||+|++.+. .|..++..+++.+. +...+=+||||++..++++++..+.++..+.+...+....
T Consensus 280 ~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~ 359 (593)
T KOG0344|consen 280 GKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANE 359 (593)
T ss_pred CCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhh
Confidence 65 78999999999999999988 89999999988876 5677889999999999999999999999999998888888
Q ss_pred CceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 245 GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 245 ~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+.|...+|-.+..|.-++.++++..-..+++||+.+.++|.+|+..|
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L 407 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEEL 407 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHh
Confidence 899999999999989999999999877779999999999999999887
No 45
>PRK09401 reverse gyrase; Reviewed
Probab=99.98 E-value=2.2e-30 Score=253.88 Aligned_cols=235 Identities=19% Similarity=0.235 Sum_probs=179.7
Q ss_pred HHHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 45 LRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 45 ~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
.+.+++ .|+ .|+++|+.+++.+++|+|++++||||+|||. |.+++...+.. .+.+++|++||++|+.|+.+.++.
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHH
Confidence 334433 466 7999999999999999999999999999996 55555444433 367999999999999999999999
Q ss_pred hhccCCceEEEEECCcch-----HHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc--------
Q 022724 124 IGDFINIQAHACVGGKSV-----GEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-------- 189 (293)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~-------- 189 (293)
+....++.+..+.++... .+....+. .+++|+|+||+++.+.+. .+...+++++||||||.+++
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~ 223 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKL 223 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhH
Confidence 998888888777766532 22333444 458999999999998776 45566799999999999986
Q ss_pred ---cccH-HHHHHHHhhCCC------------------------CccEEEEEeecChh-HHHHHHhcCCCCEEEEecCCc
Q 022724 190 ---RGFK-DQIYDVYRYLPP------------------------DLQVVLISATLPHE-ILEMTTKFMTDPVKILVKRDE 240 (293)
Q Consensus 190 ---~~~~-~~~~~i~~~l~~------------------------~~q~v~~SAt~~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (293)
.||. ..+..++..++. ..|++++|||+++. +.. .++.++..+.+....
T Consensus 224 l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~ 300 (1176)
T PRK09401 224 LYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV 300 (1176)
T ss_pred HHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc
Confidence 4564 567777666653 68999999999864 332 233455556666655
Q ss_pred ccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchh---HHHHHhhC
Q 022724 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---VLLLVLQF 292 (293)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~---a~~l~~~L 292 (293)
....++.+.++.++ ++...+..+++... .++||||++++. |+.+++.|
T Consensus 301 ~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L 351 (1176)
T PRK09401 301 FYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYL 351 (1176)
T ss_pred cccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHH
Confidence 66678888888765 37777888887654 589999999887 99998775
No 46
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.97 E-value=1.3e-30 Score=206.42 Aligned_cols=165 Identities=27% Similarity=0.474 Sum_probs=144.0
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEE
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (293)
||+|.++|+.+.+|+++++.+|||+|||++|+++++..+... ...++++++|+++|++|+.+.+..+....++++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999998876 4459999999999999999999999988888999999
Q ss_pred CCcchH-HHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC--CCccEEEEE
Q 022724 137 GGKSVG-EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDLQVVLIS 213 (293)
Q Consensus 137 ~~~~~~-~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~--~~~q~v~~S 213 (293)
++.... .....+.++++|+|+||+++.+++..+..++.++++|||||+|.+.++.+...+..+...+. .+.|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 988755 34444556799999999999999988656777899999999999988778888888888873 368999999
Q ss_pred eecChhHHH
Q 022724 214 ATLPHEILE 222 (293)
Q Consensus 214 At~~~~~~~ 222 (293)
||+++.+++
T Consensus 160 AT~~~~~~~ 168 (169)
T PF00270_consen 160 ATLPSNVEK 168 (169)
T ss_dssp SSSTHHHHH
T ss_pred eCCChhHhh
Confidence 999966554
No 47
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=3.2e-30 Score=235.03 Aligned_cols=227 Identities=16% Similarity=0.256 Sum_probs=162.2
Q ss_pred HCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.+||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. +..+||++|+++|+.|+.+.+.. .+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~----~g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKA----SG 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHH----cC
Confidence 469999999999999999999999999999999999999998753 34799999999999999888765 35
Q ss_pred ceEEEEECCcchHHHHH---HH-hcCCcEEEeChHHHHHHH-hcCCC-CCCCccEEEecchhhhhccc--cHHHHHH---
Q 022724 130 IQAHACVGGKSVGEDIR---KL-EHGVHVVSGTPGRVCDMI-KRKTL-RTRAIKLLVLDESDEMLSRG--FKDQIYD--- 198 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~---~~-~~~~~ilV~Tp~~l~~~l-~~~~~-~~~~l~~iViDE~h~~~~~~--~~~~~~~--- 198 (293)
+.+..+.++....+... .+ ...++|+++||+++.... ....+ ...++++|||||||++.+|+ |...+..
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 67777777765543322 22 345799999999976422 11111 46789999999999998876 4555443
Q ss_pred HHhhCCCCccEEEEEeecChhHHHHHHhcC--CCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHh-hCCCCcE
Q 022724 199 VYRYLPPDLQVVLISATLPHEILEMTTKFM--TDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-TLTITQA 275 (293)
Q Consensus 199 i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~-~~~~~~~ 275 (293)
+...+ +..+++++|||+++.+...+...+ .+|..+.... ...++...+ ..........+..++. ...+.++
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---~r~nl~~~v--~~~~~~~~~~l~~~l~~~~~~~~~ 229 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---DRPNLYYEV--RRKTPKILEDLLRFIRKEFKGKSG 229 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---CCCCcEEEE--EeCCccHHHHHHHHHHHhcCCCce
Confidence 33444 578999999999998766554443 3454443322 122222221 2222124555666665 4555677
Q ss_pred EEEcccchhHHHHHhhC
Q 022724 276 VIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 276 iIF~~s~~~a~~l~~~L 292 (293)
||||+|+++|+.++..|
T Consensus 230 IIF~~s~~~~e~la~~L 246 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASL 246 (470)
T ss_pred EEEECcHHHHHHHHHHH
Confidence 99999999999999876
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.97 E-value=9e-30 Score=242.30 Aligned_cols=244 Identities=16% Similarity=0.220 Sum_probs=174.1
Q ss_pred Ccc--cCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 34 SFD--AMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 34 ~f~--~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
.|. .+++...+...+++ +||..|+|.|.++|+.++.|+|+++++|||+|||+||++|++.. +..+|||+|+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPL 509 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPL 509 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCH
Confidence 455 46777777777765 79999999999999999999999999999999999999999864 3479999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh------cCCcEEEeChHHHHH---HHhc--CCCCCCCccEE
Q 022724 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE------HGVHVVSGTPGRVCD---MIKR--KTLRTRAIKLL 179 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ilV~Tp~~l~~---~l~~--~~~~~~~l~~i 179 (293)
++|+.++...+.. .++....+.++....++...+. ..++|+++||+++.. ++.. .......+.+|
T Consensus 510 iSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 510 VSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9999866555543 4788888898887766654432 457999999999863 2221 11123558999
Q ss_pred Eecchhhhhccc--cHHHHHHH--HhhCCCCccEEEEEeecChhHHHHHHhcCC--CCEEEEecCCcccCCCceEEEEEe
Q 022724 180 VLDESDEMLSRG--FKDQIYDV--YRYLPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAV 253 (293)
Q Consensus 180 ViDE~h~~~~~~--~~~~~~~i--~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~ 253 (293)
||||||++.+|| |+..+..+ +...-+..+++++|||+++.+...+...+. ++..+.. .....++. +...
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---Sf~RpNL~--y~Vv 660 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---SFNRPNLW--YSVV 660 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---ccCccceE--EEEe
Confidence 999999999987 66655542 333335789999999999988875555443 2322221 12223332 2222
Q ss_pred cCcccHHHHHHHHHhhC-CCCcEEEEcccchhHHHHHhhC
Q 022724 254 EREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 254 ~~~~~k~~~l~~l~~~~-~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.........+..++... ...+.||||+|+++|+.++..|
T Consensus 661 ~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L 700 (1195)
T PLN03137 661 PKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERL 700 (1195)
T ss_pred ccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHH
Confidence 32221234566666543 3568999999999999999876
No 49
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=3.2e-29 Score=234.38 Aligned_cols=236 Identities=17% Similarity=0.263 Sum_probs=168.0
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 40 IKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 40 l~~~i~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
.+....+.|++ +||..|+|+|+++++.++.|+|+++++|||+|||++|++|++.. +..+||++|+++|+.|+.
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHH
Confidence 33344445544 69999999999999999999999999999999999999999854 247999999999999999
Q ss_pred HHHHHhhccCCceEEEEECCcchHHHHHH---H-hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc--c
Q 022724 119 KVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--F 192 (293)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~--~ 192 (293)
+.++.+ ++.+..+.++......... + ....+++++||+++........+...++++|||||||++.+++ |
T Consensus 83 ~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 83 DQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred HHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcc
Confidence 888754 5667677776655443322 2 2456899999999874222222334678999999999998876 4
Q ss_pred HHHH---HHHHhhCCCCccEEEEEeecChhHHHHHHhc--CCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHH
Q 022724 193 KDQI---YDVYRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (293)
Q Consensus 193 ~~~~---~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 267 (293)
...+ ..+...+ +..+++++|||+++.....+... +.+|....... ...++. +....... +...+..++
T Consensus 159 r~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl~--~~v~~~~~-~~~~l~~~l 231 (607)
T PRK11057 159 RPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNIR--YTLVEKFK-PLDQLMRYV 231 (607)
T ss_pred cHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcce--eeeeeccc-hHHHHHHHH
Confidence 4443 3334444 57899999999998876544333 34554433221 122332 22222222 556677777
Q ss_pred hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 268 DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 268 ~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
....+.++||||+|+++|+.++..|
T Consensus 232 ~~~~~~~~IIFc~tr~~~e~la~~L 256 (607)
T PRK11057 232 QEQRGKSGIIYCNSRAKVEDTAARL 256 (607)
T ss_pred HhcCCCCEEEEECcHHHHHHHHHHH
Confidence 7777789999999999999999876
No 50
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=6.5e-30 Score=240.68 Aligned_cols=247 Identities=17% Similarity=0.189 Sum_probs=186.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHhhh-cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 022724 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (293)
Q Consensus 39 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~-~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~ 117 (293)
.+++.+..-+...++....+.|+.++.... +++|+++++|||+|||+.++++++..+... +.++||+||+++|+.++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek 92 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEK 92 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHH
Confidence 467788888888899889899998888754 569999999999999999999999999876 45899999999999999
Q ss_pred HHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHH
Q 022724 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (293)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~ 197 (293)
++.+++ ...+|+++...+|+.+.... ...+++|+|+|||++-.++++.......++++||||+|.+.+...+..++
T Consensus 93 ~~~~~~-~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 93 YEEFSR-LEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred HHHhhh-HHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceeh
Confidence 999994 45789999999999875542 12457999999999999999877788999999999999998887777777
Q ss_pred HHHhhCC---CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccC-CCceEEEEEecCccc-----H-HHHHHHHH
Q 022724 198 DVYRYLP---PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTL-EGIKQFFVAVEREEW-----K-FDTLCDLY 267 (293)
Q Consensus 198 ~i~~~l~---~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~-----k-~~~l~~l~ 267 (293)
.+..++. ...|++++|||+|+. .+++.+.-.++......+..... ....+.+........ . ...+...+
T Consensus 169 ~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~ 247 (766)
T COG1204 169 SIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVL 247 (766)
T ss_pred hHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHH
Confidence 7776665 347999999999985 66666665554432222222211 112233333332220 1 22233333
Q ss_pred hh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 268 DT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 268 ~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.. ..+++++|||+|++.+...++.|
T Consensus 248 ~~~~~~~qvLvFv~sR~~a~~~A~~l 273 (766)
T COG1204 248 ESLAEGGQVLVFVHSRKEAEKTAKKL 273 (766)
T ss_pred HHHhcCCeEEEEEecCchHHHHHHHH
Confidence 33 24579999999999999988764
No 51
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=4e-29 Score=234.03 Aligned_cols=229 Identities=17% Similarity=0.251 Sum_probs=169.1
Q ss_pred HHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 47 GIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 47 ~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
.|++ +||..|+|.|.++++.++.|+|+++++|||+|||++|++|++.. +..++|++|+++|+.|+.+.++.+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 3443 79999999999999999999999999999999999999998753 346899999999999999988764
Q ss_pred ccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc--cHHHHHH-
Q 022724 126 DFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYD- 198 (293)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~--~~~~~~~- 198 (293)
++.+..++++.+..+....+ ....+|+++||+++........+...++++|||||+|++.+|+ |...+..
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 57787888877655443322 3567999999999875333334456789999999999998875 5544443
Q ss_pred --HHhhCCCCccEEEEEeecChhHHHHHHhcCC--CCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCc
Q 022724 199 --VYRYLPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 274 (293)
Q Consensus 199 --i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~ 274 (293)
+...++ ..+++++|||.++.+...+...+. ++..+... ....++. +...... .+...+..++....+.+
T Consensus 154 ~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl~--~~v~~~~-~~~~~l~~~l~~~~~~~ 226 (591)
T TIGR01389 154 GSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITS---FDRPNLR--FSVVKKN-NKQKFLLDYLKKHRGQS 226 (591)
T ss_pred HHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCCCcE--EEEEeCC-CHHHHHHHHHHhcCCCC
Confidence 344443 456999999999988776655543 33333211 1222222 2222223 36677778887777789
Q ss_pred EEEEcccchhHHHHHhhC
Q 022724 275 AVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 275 ~iIF~~s~~~a~~l~~~L 292 (293)
+||||+|+++|+.+++.|
T Consensus 227 ~IIf~~sr~~~e~la~~L 244 (591)
T TIGR01389 227 GIIYASSRKKVEELAERL 244 (591)
T ss_pred EEEEECcHHHHHHHHHHH
Confidence 999999999999999876
No 52
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=6.6e-29 Score=248.41 Aligned_cols=239 Identities=17% Similarity=0.204 Sum_probs=177.4
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 43 DLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 43 ~i~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
++.+.+++ +|| .|+++|+++++.+++|+|++++||||+|||++++++++.... .+.+++|++||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHH
Confidence 45555665 799 599999999999999999999999999999976666554422 3568999999999999999999
Q ss_pred HHhhccC--CceEEEEECCcchHHHHH---HHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc------
Q 022724 122 LAIGDFI--NIQAHACVGGKSVGEDIR---KLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS------ 189 (293)
Q Consensus 122 ~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~-~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~------ 189 (293)
+.+.... ++++..++|+.+..++.. .+.+ .++|+|+||+.+...+... . ..++++|||||||+|++
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccc
Confidence 9988765 456777888887766533 3333 5899999999998765542 2 27799999999999986
Q ss_pred -----cccHHHHHH----HHh----------------------hCCCCcc-EEEEEeecChhHHHHHHhcCCCCEEEEec
Q 022724 190 -----RGFKDQIYD----VYR----------------------YLPPDLQ-VVLISATLPHEILEMTTKFMTDPVKILVK 237 (293)
Q Consensus 190 -----~~~~~~~~~----i~~----------------------~l~~~~q-~v~~SAt~~~~~~~~~~~~~~~~~~~~~~ 237 (293)
.+|..++.. +++ .+++..| ++++|||.++. .....++.++..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEec
Confidence 366666543 321 2334455 67799999863 1112334567777777
Q ss_pred CCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchh---HHHHHhhC
Q 022724 238 RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---VLLLVLQF 292 (293)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~---a~~l~~~L 292 (293)
.......++.+.++.++... + ..+..+++.. +.++||||+|++. |+.+++.|
T Consensus 299 ~~~~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L 353 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKII-K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYL 353 (1638)
T ss_pred CCCCCCCCcEEEEEECCHHH-H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHH
Confidence 76666778888888765443 4 4677777766 4689999999876 47877765
No 53
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=233.91 Aligned_cols=245 Identities=20% Similarity=0.273 Sum_probs=187.1
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHH
Q 022724 41 KDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (293)
Q Consensus 41 ~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~ 120 (293)
...+..++.+.|...++++|.+|+..+.+|+|++|+.|||||||++|++|+++.+...+.. ++|+|.||++|++++.++
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 4456888888899999999999999999999999999999999999999999999887665 899999999999999999
Q ss_pred HHHhhccCC--ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC----CCCCCCccEEEecchhhhhccccHH
Q 022724 121 ILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDEMLSRGFKD 194 (293)
Q Consensus 121 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~----~~~~~~l~~iViDE~h~~~~~~~~~ 194 (293)
++++....+ +.+..+.|+....+....+.++++|++|||+++..++... .+.++++++||+||+|.+- ..++.
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr-Gv~GS 213 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR-GVQGS 213 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc-ccchh
Confidence 999987777 7777888888777766777899999999999999955432 2345889999999999873 23444
Q ss_pred HHHHHHhh-------CCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecC--------cccH
Q 022724 195 QIYDVYRY-------LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER--------EEWK 259 (293)
Q Consensus 195 ~~~~i~~~-------l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~k 259 (293)
++..++++ .+.+.|+|+.|||+.+. .++...+........+. .+..+.....++..-+. ...+
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 44443333 34578999999999776 55666666655555333 33334444444443330 1124
Q ss_pred HHHHHHHHhhC--CCCcEEEEcccchhHHHHH
Q 022724 260 FDTLCDLYDTL--TITQAVIFCNTKRKVLLLV 289 (293)
Q Consensus 260 ~~~l~~l~~~~--~~~~~iIF~~s~~~a~~l~ 289 (293)
...+..+.... .+-++|+||.+++.++.++
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~ 323 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLY 323 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhh
Confidence 55555555432 4559999999999999886
No 54
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=6.7e-28 Score=231.44 Aligned_cols=234 Identities=19% Similarity=0.178 Sum_probs=171.8
Q ss_pred CCHHHHHHHH-HCCCCCCcHHHHHHHHhhhcC------CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 40 IKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 40 l~~~i~~~l~-~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
.+....+.+. .++|. ||+.|.++++.+.++ +|.+++||||+|||.+|+++++..+.. +.+++|++||++
T Consensus 436 ~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHH
Confidence 4455666654 46785 999999999999875 799999999999999999999988765 468999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
||.|+++.++++....++++..++++.+..+.. +.+.+ .++|+||||.. + +....+++++++||||+|++.
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrfg 586 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRFG 586 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccccc
Confidence 999999999998888889998888877654433 33333 58999999942 2 345678999999999999863
Q ss_pred ccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHh
Q 022724 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (293)
Q Consensus 189 ~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 268 (293)
......++.++...|+++||||+.+....+......++..+...+.+ ...+..++...+... -...+...+
T Consensus 587 -----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~~~-i~~~i~~el- 657 (926)
T TIGR00580 587 -----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDPEL-VREAIRREL- 657 (926)
T ss_pred -----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCHHH-HHHHHHHHH-
Confidence 22344556667789999999998777666665566677666654432 223444444222111 111222222
Q ss_pred hCCCCcEEEEcccchhHHHHHhhC
Q 022724 269 TLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 269 ~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+++++||||++++++.+++.|
T Consensus 658 -~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 658 -LRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred -HcCCeEEEEECCcHHHHHHHHHH
Confidence 24579999999999999988765
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=7.5e-29 Score=217.44 Aligned_cols=251 Identities=19% Similarity=0.234 Sum_probs=199.5
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
...+++++++++.+-|+..|++.+.|+|.-++.. ++.|.|.+|+++|+||||++..++.+..+... +.+.+|++|..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~KmlfLvPLV 271 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVPLV 271 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeEEEEehhH
Confidence 4678899999999999999999999999999998 88999999999999999999999999988775 45899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEECCcchHHHH----HHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDI----RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
+||+|-++.++.-...+++.+..-.|..-..... -....+.||||+|.+-+-++++.+ .++.++..+||||+|.+
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTL 350 (830)
T ss_pred HhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeec
Confidence 9999999999876677888887766653222211 111235699999999999999988 66899999999999999
Q ss_pred hccccHHHHHHHH---hhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHH
Q 022724 188 LSRGFKDQIYDVY---RYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (293)
Q Consensus 188 ~~~~~~~~~~~i~---~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 264 (293)
.+...+..+.-++ +++-+..|+|++|||+.+. ..+++.+...+... +..|-.+....+++..+..|...+.
T Consensus 351 ~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y-----~~RPVplErHlvf~~~e~eK~~ii~ 424 (830)
T COG1202 351 EDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLY-----DERPVPLERHLVFARNESEKWDIIA 424 (830)
T ss_pred cchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEee-----cCCCCChhHeeeeecCchHHHHHHH
Confidence 7765555554444 4444689999999999775 56666654443333 2334456666777887777999988
Q ss_pred HHHhhC-----C---CCcEEEEcccchhHHHHHhhC
Q 022724 265 DLYDTL-----T---ITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 265 ~l~~~~-----~---~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+.+.. + .++||||.+|++.|..++..|
T Consensus 425 ~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L 460 (830)
T COG1202 425 RLVKREFSTESSKGYRGQTIVFTYSRRRCHELADAL 460 (830)
T ss_pred HHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHh
Confidence 887531 1 359999999999999999886
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=6.6e-28 Score=236.02 Aligned_cols=231 Identities=16% Similarity=0.159 Sum_probs=174.7
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHhhhcC------CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHH
Q 022724 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (293)
Q Consensus 43 ~i~~~l~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q 116 (293)
+..+....+.| .||+.|.++|+.+..+ +|++++|+||+|||.+|+.+++..+.. +.+++|++||++|+.|
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHH
Confidence 44444567777 5999999999999886 799999999999999999888776643 6799999999999999
Q ss_pred HHHHHHHhhccCCceEEEEECCcchHHHHHHHh----cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc
Q 022724 117 TEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (293)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~ 192 (293)
+++.+++.....++++..++++.+..++.+.+. ..++|+|+||+.+ . ....+.+++++||||+|++. +
T Consensus 665 ~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrfG---~ 736 (1147)
T PRK10689 665 HYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRFG---V 736 (1147)
T ss_pred HHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhcc---h
Confidence 999999877777888888888877666554432 4689999999633 2 34567899999999999972 2
Q ss_pred HHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCC
Q 022724 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 272 (293)
Q Consensus 193 ~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~ 272 (293)
. ....++.++.++|++++|||+.+....+....+.++..+...... ...+.+++........+...+.++. .+
T Consensus 737 ~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~---r~ 809 (1147)
T PRK10689 737 R--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREIL---RG 809 (1147)
T ss_pred h--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHh---cC
Confidence 2 234456677889999999999888788777778888877665433 2235555544332222333333333 35
Q ss_pred CcEEEEcccchhHHHHHhhC
Q 022724 273 TQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 273 ~~~iIF~~s~~~a~~l~~~L 292 (293)
++++||||+++.++.+++.|
T Consensus 810 gqv~vf~n~i~~ie~la~~L 829 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERL 829 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHH
Confidence 79999999999988888765
No 57
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=5e-28 Score=237.62 Aligned_cols=238 Identities=18% Similarity=0.240 Sum_probs=173.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 42 ~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
.++.+.+.+.....|+++|+.+++.++.|+|++++||||+|||. |.+++...+... +++++|++||++|+.|+.+.+
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~--g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK--GKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc--CCeEEEEeCHHHHHHHHHHHH
Confidence 34555555544457999999999999999999999999999996 666666555432 679999999999999999999
Q ss_pred HHhhccCCceEE---EEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc-----
Q 022724 122 LAIGDFINIQAH---ACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS----- 189 (293)
Q Consensus 122 ~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~----- 189 (293)
+.+....++.+. .++|+.+..++. ..+. ++++|+|+||+++...+..- .. +++++|+||||.|++
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhccccH
Confidence 999887776543 467877665542 2333 35899999999998876542 12 899999999999987
Q ss_pred ------cccHHH-HHHHH----------------------hhCCCCcc--EEEEEee-cChhHHHHHHhcCCCCEEEEec
Q 022724 190 ------RGFKDQ-IYDVY----------------------RYLPPDLQ--VVLISAT-LPHEILEMTTKFMTDPVKILVK 237 (293)
Q Consensus 190 ------~~~~~~-~~~i~----------------------~~l~~~~q--~v~~SAt-~~~~~~~~~~~~~~~~~~~~~~ 237 (293)
.||..+ +..++ +.+++..| ++++||| .|..+.. .++.++..+.+.
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~ 295 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVG 295 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEec
Confidence 456543 34332 23344444 6778999 5655432 234555666666
Q ss_pred CCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccc---hhHHHHHhhC
Q 022724 238 RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK---RKVLLLVLQF 292 (293)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~---~~a~~l~~~L 292 (293)
.......++.+.+...+. +...+.++++.. +.++||||+++ +.|+.+++.|
T Consensus 296 ~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L 349 (1171)
T TIGR01054 296 GGSDTLRNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFL 349 (1171)
T ss_pred CccccccceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHH
Confidence 655666778888775543 234566777665 36899999999 9999999876
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=2e-27 Score=234.34 Aligned_cols=215 Identities=16% Similarity=0.212 Sum_probs=152.3
Q ss_pred EEcCCCChhHHHHHHHHHhhhccC----------CCceeEEEEcCCHHHHHHHHHHHHHhh------------ccCCceE
Q 022724 75 AQAQSGTGKTSMIALTVCQTVDTS----------SREVQALILSPTRELATQTEKVILAIG------------DFINIQA 132 (293)
Q Consensus 75 i~~~Tg~GKT~~~~~~~~~~l~~~----------~~~~~~lil~P~~~l~~q~~~~~~~~~------------~~~~~~~ 132 (293)
|++|||||||++|.+|+++.+... ..+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999988643 235799999999999999999887521 1347889
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEecchhhhhccccHH----HHHHHHhhCCCCc
Q 022724 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGFKD----QIYDVYRYLPPDL 207 (293)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~-~~~~~~l~~iViDE~h~~~~~~~~~----~~~~i~~~l~~~~ 207 (293)
...+|+++..++.+.+.++++|+|+||+++..++.++ ...++++++|||||+|.+.+..++. .+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887777788999999999999987653 3468999999999999998765443 4555556666789
Q ss_pred cEEEEEeecChhHHHHHHhcCC-CCEEEEecCCcccCCCceEEEEEecCcc-------------------cHHHH-HHHH
Q 022724 208 QVVLISATLPHEILEMTTKFMT-DPVKILVKRDELTLEGIKQFFVAVEREE-------------------WKFDT-LCDL 266 (293)
Q Consensus 208 q~v~~SAt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------~k~~~-l~~l 266 (293)
|+|++|||+++. ++..+++.. ++..+.. ........+. .++...+.. ..... ...+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999873 555555443 3544432 2222222232 222211100 00011 1123
Q ss_pred Hhh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 267 YDT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 267 ~~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+.. ....++||||||++.|+.++..|
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L 264 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARL 264 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence 322 23569999999999999998765
No 59
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=6.7e-26 Score=199.37 Aligned_cols=226 Identities=13% Similarity=0.098 Sum_probs=151.3
Q ss_pred HHHHHHHhhhcCCc--EEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc----CCceE
Q 022724 59 IQQRAVMPIIKGRD--VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF----INIQA 132 (293)
Q Consensus 59 ~Q~~~~~~i~~~~~--~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~----~~~~~ 132 (293)
+|.++|+.+.++++ +++++|||+|||++|++|++.. +.+++|++|+++|++|+++.++.+... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999998864 8899999999999999998852 346899999999999999999887633 24556
Q ss_pred EEEECCcchH--HHH------------------HHHhcCCcEEEeChHHHHHHHhcC----C-C---CCCCccEEEecch
Q 022724 133 HACVGGKSVG--EDI------------------RKLEHGVHVVSGTPGRVCDMIKRK----T-L---RTRAIKLLVLDES 184 (293)
Q Consensus 133 ~~~~~~~~~~--~~~------------------~~~~~~~~ilV~Tp~~l~~~l~~~----~-~---~~~~l~~iViDE~ 184 (293)
..+.|....+ ... ....+.+.|+++||+.+..+++.. . . .+.++++|||||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666652221 000 011246789999999998776542 1 1 2478999999999
Q ss_pred hhhhcccc-----HHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhc--CCCCEEEEecCCc----------c------
Q 022724 185 DEMLSRGF-----KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKRDE----------L------ 241 (293)
Q Consensus 185 h~~~~~~~-----~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~--~~~~~~~~~~~~~----------~------ 241 (293)
|.+..+.. .-....+++......+++++|||+++.+...+... +..+......... .
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 99864321 11233444444446799999999999888877765 4444433222200 0
Q ss_pred --cCCCceEEEEEecCcccHHHHHHHHH-------hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 242 --TLEGIKQFFVAVEREEWKFDTLCDLY-------DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 242 --~~~~i~~~~~~~~~~~~k~~~l~~l~-------~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+.+.+.+.. . ...|...+..++ +..+++++||||||++.|+.++..|
T Consensus 235 ~~~~~~i~~~~~~-~-~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L 292 (357)
T TIGR03158 235 RPVLPPVELELIP-A-PDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLL 292 (357)
T ss_pred ceeccceEEEEEe-C-CchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHH
Confidence 01245554443 2 222444333322 2235679999999999999999876
No 60
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=4.3e-27 Score=218.16 Aligned_cols=238 Identities=13% Similarity=0.222 Sum_probs=175.4
Q ss_pred HCCCCCCcHHHHHHHHhhh-cCCcEEEEcCCCChhHHHHHHHHHhhhcc-------CCCceeEEEEcCCHHHHHHHHHHH
Q 022724 50 QYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDT-------SSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~-~~~~~li~~~Tg~GKT~~~~~~~~~~l~~-------~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
-++|..++.+|++++|... ++.|.+||||||+|||-.|++.+++.+.. ...+.++||++|+++||.++.+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 3578899999999999876 56799999999999999999999998864 234679999999999999999999
Q ss_pred HHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC---CCCCCccEEEecchhhhhccccHHHHHH
Q 022724 122 LAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (293)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~---~~~~~l~~iViDE~h~~~~~~~~~~~~~ 198 (293)
.+-....|+++..+.|+++...-. -..++|+|+|||++--.-+... ..++.+.++||||+|++.+. .+..++.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 887778899999999998765432 2357999999999864433322 22577899999999988644 5666666
Q ss_pred HHhhC-------CCCccEEEEEeecChhHHHHHHhcCCCC-EEEEecCCcccCCCceEEEEEecCcc--cHHHHH-----
Q 022724 199 VYRYL-------PPDLQVVLISATLPHEILEMTTKFMTDP-VKILVKRDELTLEGIKQFFVAVEREE--WKFDTL----- 263 (293)
Q Consensus 199 i~~~l-------~~~~q~v~~SAt~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~--~k~~~l----- 263 (293)
+..++ ....++|++|||+|+- .+.+.++--+| ..+..-.....+-.+.+.++-+.... .+...+
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 65554 3568999999999985 66666555443 33333333345556777777666551 122222
Q ss_pred HHHHhh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 264 CDLYDT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 264 ~~l~~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
....+. ..+.+++|||++++++.+.|+.|
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l 369 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKL 369 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHH
Confidence 122222 23569999999999999988765
No 61
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.95 E-value=9.4e-26 Score=213.30 Aligned_cols=225 Identities=20% Similarity=0.226 Sum_probs=156.2
Q ss_pred HHHHHHH-HHCCCCCCcHHHHHHHHhhhcC------CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHH
Q 022724 42 DDLLRGI-YQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (293)
Q Consensus 42 ~~i~~~l-~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~ 114 (293)
..+.+.+ ..++|. ||+.|+++++.+.++ ++.+++||||||||++|++|++..+.. +.+++|++||++|+
T Consensus 248 ~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 3444444 456775 999999999999876 489999999999999999999988754 67899999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
.|+++.++++....++++..++|+.+..+.. ..+.+ .++|+||||+.+.. ...+.+++++||||+|++...
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~ 398 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE 398 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH
Confidence 9999999999988899999999998754433 33433 58999999976643 345789999999999997422
Q ss_pred ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhC
Q 022724 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (293)
Q Consensus 191 ~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~ 270 (293)
....+.......++++||||+.+....+......++..+.... .....+...+............+...+ .
T Consensus 399 -----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p--~~r~~i~~~~~~~~~~~~~~~~i~~~~--~ 469 (681)
T PRK10917 399 -----QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP--PGRKPITTVVIPDSRRDEVYERIREEI--A 469 (681)
T ss_pred -----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC--CCCCCcEEEEeCcccHHHHHHHHHHHH--H
Confidence 2222333455689999999987765554432222333222211 112234444433222221122233322 3
Q ss_pred CCCcEEEEcccchh
Q 022724 271 TITQAVIFCNTKRK 284 (293)
Q Consensus 271 ~~~~~iIF~~s~~~ 284 (293)
.+.+++|||+++++
T Consensus 470 ~g~q~~v~~~~ie~ 483 (681)
T PRK10917 470 KGRQAYVVCPLIEE 483 (681)
T ss_pred cCCcEEEEEccccc
Confidence 45799999997654
No 62
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=1.7e-25 Score=208.30 Aligned_cols=223 Identities=19% Similarity=0.143 Sum_probs=158.0
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhHHH---------HHHHHHhhhc---cCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSM---------IALTVCQTVD---TSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~---------~~~~~~~~l~---~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
-.+|.++++.+.+|++++++|+||+|||.+ |++|.+..+. ....+.++++++|+++|+.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999987 5555555543 2334568999999999999999988765
Q ss_pred hcc---CCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHh
Q 022724 125 GDF---INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (293)
Q Consensus 125 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~ 201 (293)
... .+..+...+|+.+. ..........+|+|+|++. ....++++++||+||||.+...+ +.+..+++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHHH
Confidence 433 35677888888763 2222222356899999742 12347889999999999986554 44555555
Q ss_pred hCC-CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecC---------cccHHHHHHHHHhh--
Q 022724 202 YLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER---------EEWKFDTLCDLYDT-- 269 (293)
Q Consensus 202 ~l~-~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~k~~~l~~l~~~-- 269 (293)
.+. ...|+++||||+++++..+ ..++.++..+.+.. .....+.+.+..... ...+...+..+...
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~ 392 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTP 392 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhc
Confidence 443 3459999999999887776 57888888887752 234567777764331 11122223333322
Q ss_pred CCCCcEEEEcccchhHHHHHhhC
Q 022724 270 LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 270 ~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..++++||||+++++++.+++.|
T Consensus 393 ~~~g~iLVFlpg~~ei~~l~~~L 415 (675)
T PHA02653 393 PKGSSGIVFVASVSQCEEYKKYL 415 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHH
Confidence 23468999999999999998876
No 63
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.94 E-value=6.1e-25 Score=206.47 Aligned_cols=223 Identities=19% Similarity=0.170 Sum_probs=151.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHhhhcC------CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 022724 44 LLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (293)
Q Consensus 44 i~~~l~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~ 117 (293)
+.+.+..++| .||+.|+++++.+.++ .+.+++||||||||.+|++|++..+.. +.+++|++||++|+.|+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHH
Confidence 4455667788 5999999999999865 368999999999999999999988764 56899999999999999
Q ss_pred HHHHHHhhccCCceEEEEECCcchHHHH---HHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccH
Q 022724 118 EKVILAIGDFINIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (293)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~ 193 (293)
++.++++....++++..++|+....+.. ..+. ..++|+|+||+.+.. ...+.+++++||||+|.+....
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q-- 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ-- 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH--
Confidence 9999999988899999999998765532 3333 357999999987653 3567899999999999864321
Q ss_pred HHHHHHHhhCC--CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhh-C
Q 022724 194 DQIYDVYRYLP--PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT-L 270 (293)
Q Consensus 194 ~~~~~i~~~l~--~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~-~ 270 (293)
...+..... ...++++||||+.+....+......+...+.. .......+...+.. ... +...+..+.+. .
T Consensus 374 --r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~--~p~~r~~i~~~~~~--~~~-~~~~~~~i~~~l~ 446 (630)
T TIGR00643 374 --RKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDE--LPPGRKPITTVLIK--HDE-KDIVYEFIEEEIA 446 (630)
T ss_pred --HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeecc--CCCCCCceEEEEeC--cch-HHHHHHHHHHHHH
Confidence 122222222 26899999999866544433221112111111 11111223333332 222 32223222222 2
Q ss_pred CCCcEEEEcccchh
Q 022724 271 TITQAVIFCNTKRK 284 (293)
Q Consensus 271 ~~~~~iIF~~s~~~ 284 (293)
.+.+++|||+++++
T Consensus 447 ~g~q~~v~~~~i~~ 460 (630)
T TIGR00643 447 KGRQAYVVYPLIEE 460 (630)
T ss_pred hCCcEEEEEccccc
Confidence 46799999998743
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.93 E-value=2.1e-25 Score=197.36 Aligned_cols=215 Identities=18% Similarity=0.121 Sum_probs=139.1
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchH---------
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVG--------- 142 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 142 (293)
++++++|||+|||++|++++++.+... .+.+++|++|+++|+.|+.+++..+... .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 589999999999999999999887543 3568999999999999999999987432 333444432210
Q ss_pred ---HHHHHH-h-----cCCcEEEeChHHHHHHHhcCC----CCC--CCccEEEecchhhhhccccHHHHHHHHhhCC-CC
Q 022724 143 ---EDIRKL-E-----HGVHVVSGTPGRVCDMIKRKT----LRT--RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PD 206 (293)
Q Consensus 143 ---~~~~~~-~-----~~~~ilV~Tp~~l~~~l~~~~----~~~--~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~-~~ 206 (293)
...... . ...+|+|+||+++.+.+..+. ..+ -..+++|+||+|.+.+.++.. +..+++.+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 000000 0 235799999999988765521 111 123789999999998765443 555554443 47
Q ss_pred ccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEE-ecCcccHHHHHHHHHhhC-CCCcEEEEcccchh
Q 022724 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA-VEREEWKFDTLCDLYDTL-TITQAVIFCNTKRK 284 (293)
Q Consensus 207 ~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~k~~~l~~l~~~~-~~~~~iIF~~s~~~ 284 (293)
.|+++||||+|+.+.++.......+.....+..... ....+.+.. ......+...+..+++.. .++++||||||+++
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 899999999998877777655433211111111000 011222222 222223566666666543 46799999999999
Q ss_pred HHHHHhhC
Q 022724 285 VLLLVLQF 292 (293)
Q Consensus 285 a~~l~~~L 292 (293)
|+.+++.|
T Consensus 235 ~~~~~~~L 242 (358)
T TIGR01587 235 AQEFYQQL 242 (358)
T ss_pred HHHHHHHH
Confidence 99998776
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.92 E-value=1.1e-23 Score=200.90 Aligned_cols=216 Identities=19% Similarity=0.261 Sum_probs=156.5
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-HhhccCCceEEEEEC
Q 022724 59 IQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHACVG 137 (293)
Q Consensus 59 ~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~~ 137 (293)
+-.+.+..+.++++++++||||||||.+|.+++++.... ..+++++.|++++|.|+.+++. .+....|..+....+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 334566777788999999999999999999999976432 2489999999999999999985 455556777776666
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh-hccc-cHHHHHHHHhhCCCCccEEEEEee
Q 022724 138 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRG-FKDQIYDVYRYLPPDLQVVLISAT 215 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~-~~~~-~~~~~~~i~~~l~~~~q~v~~SAt 215 (293)
+.+.. ....+|+|+||+.+.+++... ..++++++|||||+|.. ++.. ....+..+.+.++++.|+++||||
T Consensus 86 ~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 86 AESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred Ccccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecC
Confidence 54321 234589999999999988763 57899999999999973 3322 223345566777788999999999
Q ss_pred cChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHH-----HHHHHHhhCCCCcEEEEcccchhHHHHHh
Q 022724 216 LPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD-----TLCDLYDTLTITQAVIFCNTKRKVLLLVL 290 (293)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~-----~l~~l~~~~~~~~~iIF~~s~~~a~~l~~ 290 (293)
++... ...++.++..+..... ...+.++|..++... +.. .+..++.. ..+++||||+++++++.+++
T Consensus 159 l~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~-~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 159 LDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQ-RFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred CCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhh-hHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHH
Confidence 98652 3456665555544322 234677776655443 332 24444443 35799999999999999988
Q ss_pred hC
Q 022724 291 QF 292 (293)
Q Consensus 291 ~L 292 (293)
.|
T Consensus 231 ~L 232 (812)
T PRK11664 231 QL 232 (812)
T ss_pred HH
Confidence 76
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.92 E-value=3.7e-23 Score=196.99 Aligned_cols=217 Identities=17% Similarity=0.217 Sum_probs=155.9
Q ss_pred HHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-HhhccCCceEEEEEC
Q 022724 59 IQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHACVG 137 (293)
Q Consensus 59 ~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~~ 137 (293)
+-.+.+..+.++++++++|+||||||.+|.+++++... .+.+++++.|++++|.|+.+++. .+....|..+....+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 34456677778899999999999999999999998763 24589999999999999999885 455555666655544
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhh-hhccccHH-HHHHHHhhCCCCccEEEEEee
Q 022724 138 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLPPDLQVVLISAT 215 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~-~~~~~~~~-~~~~i~~~l~~~~q~v~~SAt 215 (293)
+.. ......+|+|+||+.|.+++.. ...++++++|||||+|. .++.++.- .+..+.+.+++..|+|+||||
T Consensus 83 ~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 83 GEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred ccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 432 2234568999999999998876 35789999999999995 55544432 344566667788999999999
Q ss_pred cChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHH----HHHHHHHhhCCCCcEEEEcccchhHHHHHhh
Q 022724 216 LPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF----DTLCDLYDTLTITQAVIFCNTKRKVLLLVLQ 291 (293)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~----~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~ 291 (293)
++... ...++.++..+..... ...+.++|.......... ..+..+++. ..+++||||+++++++.+++.
T Consensus 156 l~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 156 LDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred CCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHH
Confidence 98753 3456655555544322 234666766554433111 234444443 357899999999999999876
Q ss_pred C
Q 022724 292 F 292 (293)
Q Consensus 292 L 292 (293)
|
T Consensus 229 L 229 (819)
T TIGR01970 229 L 229 (819)
T ss_pred H
Confidence 5
No 67
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.92 E-value=1.2e-24 Score=185.45 Aligned_cols=193 Identities=28% Similarity=0.393 Sum_probs=146.0
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhh---ccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 100 REVQALILSPTRELATQTEKVILAIG---DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++++|+-|+++|++|+.+.++++. .+..++...+.||.-...+.+.+.++.+|+|+||+++.+++..+...+.++
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 34789999999999999999777665 344566667888888888999999999999999999999999999999999
Q ss_pred cEEEecchhhhhccccHHHHHHHHhhCC------CCccEEEEEeecCh-hHHHHHHhcCCCCEEEEecCCcccCCCceEE
Q 022724 177 KLLVLDESDEMLSRGFKDQIYDVYRYLP------PDLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQF 249 (293)
Q Consensus 177 ~~iViDE~h~~~~~~~~~~~~~i~~~l~------~~~q~v~~SAt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (293)
.++|+||+|.++..+|.+.+.++...++ .+.|.++.|||+.. +++.+.+..|.=|..+.....+..+..+++.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 9999999999999999999988888776 36899999999853 3455666666656666555554455555444
Q ss_pred EEEecCcc-----------------------------cHHHH---------HHHHHhhCCCCcEEEEcccchhHHHHHhh
Q 022724 250 FVAVEREE-----------------------------WKFDT---------LCDLYDTLTITQAVIFCNTKRKVLLLVLQ 291 (293)
Q Consensus 250 ~~~~~~~~-----------------------------~k~~~---------l~~l~~~~~~~~~iIF~~s~~~a~~l~~~ 291 (293)
+..+...- ..... -...++++...++||||.|+.+|+.+.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 33322110 01111 11223455667999999999999988776
Q ss_pred C
Q 022724 292 F 292 (293)
Q Consensus 292 L 292 (293)
+
T Consensus 525 ~ 525 (725)
T KOG0349|consen 525 M 525 (725)
T ss_pred H
Confidence 4
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=6.7e-24 Score=191.75 Aligned_cols=232 Identities=18% Similarity=0.207 Sum_probs=165.3
Q ss_pred HHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 46 RGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 46 ~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
..|++ +||..+++-|.++|..+++|+|+++..|||+||++||.+|++-. .| -+|||+|..+|..++.+.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~G-~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----EG-LTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----CC-CEEEECchHHHHHHHHHHHHHc
Confidence 34543 69999999999999999999999999999999999999999765 23 6999999999999999988764
Q ss_pred hccCCceEEEEECCcchHHHHHHH---h-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc--cHHHHHH
Q 022724 125 GDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYD 198 (293)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~--~~~~~~~ 198 (293)
|+.+..+++.-+.++....+ . ...+++.-+||++..--....+.-..+.++||||||++.+|| |+..+..
T Consensus 81 ----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 81 ----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred ----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 57777888776655543332 2 346899999999975222222335678999999999999997 7766655
Q ss_pred H---HhhCCCCccEEEEEeecChhHHHHHHhcCC--CCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCC
Q 022724 199 V---YRYLPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 273 (293)
Q Consensus 199 i---~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~ 273 (293)
+ ...++ +..++++|||.++.+..-+...+. .+..+... ...+++...+........+...+.. ......+
T Consensus 157 lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~ 231 (590)
T COG0514 157 LGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSK 231 (590)
T ss_pred HHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CCCchhhhhhhhcccHHHHHHHHHh-hccccCC
Confidence 4 44454 789999999999988886665443 33333332 2223333222222211223332222 1144456
Q ss_pred cEEEEcccchhHHHHHhhC
Q 022724 274 QAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 274 ~~iIF~~s~~~a~~l~~~L 292 (293)
+.||||.|++.|+.+++.|
T Consensus 232 ~GIIYc~sRk~~E~ia~~L 250 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWL 250 (590)
T ss_pred CeEEEEeeHHhHHHHHHHH
Confidence 8999999999999999876
No 69
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.91 E-value=1.3e-23 Score=192.90 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=114.8
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q 022724 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (293)
Q Consensus 53 ~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (293)
...|+++|+++++.++.+++.++++|||+|||+++...+...+.. ...+++|++|+++|+.|+.+.++++.......+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~ 189 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAM 189 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhccccccce
Confidence 357999999999999999999999999999998765432222222 234899999999999999999998765444445
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
..+.+|.... .+.+|+|+||+++.+... ..++++++||+||+|++.... +..++..+++..+++++
T Consensus 190 ~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGL 255 (501)
T PHA02558 190 HKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGL 255 (501)
T ss_pred eEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh----HHHHHHhhhccceEEEE
Confidence 4555554322 246899999999876432 246789999999999986543 45666666667889999
Q ss_pred EeecChh
Q 022724 213 SATLPHE 219 (293)
Q Consensus 213 SAt~~~~ 219 (293)
|||+.+.
T Consensus 256 TATp~~~ 262 (501)
T PHA02558 256 TGSLRDG 262 (501)
T ss_pred eccCCCc
Confidence 9999654
No 70
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.91 E-value=2.5e-22 Score=162.35 Aligned_cols=187 Identities=35% Similarity=0.591 Sum_probs=153.7
Q ss_pred CCCCCCcHHHHHHHHhhhcC-CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 51 YGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.++..|+++|.++++.+..+ +++++.+|||+|||.++..+++..+.... ..++++++|+..++.|+...+..+.....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 46788999999999999988 99999999999999999999988877653 34799999999999999999988776554
Q ss_pred ceEEEEECCcchHHHHHHHhcCC-cEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCcc
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGV-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~-~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q 208 (293)
.......++.........+.++. +++++|++.+.+.+........+++++|+||+|.+....+...+..++..+++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 162 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQ 162 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccce
Confidence 33344444444344555555555 99999999999988887777888999999999999765778888888888888899
Q ss_pred EEEEEeecChhHHHHHHhcCCCCEEEEecC
Q 022724 209 VVLISATLPHEILEMTTKFMTDPVKILVKR 238 (293)
Q Consensus 209 ~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~ 238 (293)
++++|||+++........++.+...+....
T Consensus 163 ~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 163 LLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred EEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 999999999998888888887666665543
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.90 E-value=2.7e-22 Score=193.93 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=128.6
Q ss_pred CCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q 022724 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (293)
+.-.|+++|++++...+.+ |+++++|||+|||+++++++...+.. .+.++||++|+++|+.|+.+.++.+....+.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 4457999999999988776 99999999999999999988887742 34689999999999999999999876554557
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEE
Q 022724 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (293)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~ 211 (293)
+..++|+.+..... .+..+.+|+|+||+.+...+..+.+.+.++++|||||||++........+........+..++++
T Consensus 89 v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~ 167 (773)
T PRK13766 89 IVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLG 167 (773)
T ss_pred EEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEE
Confidence 77788877665443 33345799999999999887777888899999999999998655333334444444445678999
Q ss_pred EEeecC
Q 022724 212 ISATLP 217 (293)
Q Consensus 212 ~SAt~~ 217 (293)
+|||+.
T Consensus 168 lTaTP~ 173 (773)
T PRK13766 168 LTASPG 173 (773)
T ss_pred EEcCCC
Confidence 999974
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=4.1e-22 Score=183.42 Aligned_cols=231 Identities=17% Similarity=0.210 Sum_probs=171.3
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|. .|+++|..+++.+..|+ +..+.||+|||++|.+|++..... |++++|++||++||.|.++.+..+...+|+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 454 49999999999999999 999999999999999999987654 568999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC-------------------------CCCCCccEEEecch
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT-------------------------LRTRAIKLLVLDES 184 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~~-------------------------~~~~~l~~iViDE~ 184 (293)
++..++|+.+.. .+....+++|+++|...+ .++|+.+. ...+.+.+.||||+
T Consensus 174 sv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 999999997643 344456789999999887 44554431 11366899999999
Q ss_pred hhhh-ccc-----------------cHHHHHHHHhhC--------------------------------CC---------
Q 022724 185 DEML-SRG-----------------FKDQIYDVYRYL--------------------------------PP--------- 205 (293)
Q Consensus 185 h~~~-~~~-----------------~~~~~~~i~~~l--------------------------------~~--------- 205 (293)
|.++ |.. .......+...+ +.
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 9974 110 000011110000 00
Q ss_pred ----------------------------------------------------------------------------CccE
Q 022724 206 ----------------------------------------------------------------------------DLQV 209 (293)
Q Consensus 206 ----------------------------------------------------------------------------~~q~ 209 (293)
-.++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 1368
Q ss_pred EEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhC--CCCcEEEEcccchhHHH
Q 022724 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVLL 287 (293)
Q Consensus 210 v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~--~~~~~iIF~~s~~~a~~ 287 (293)
.+||||.+....++...|..++..+...... .....+.++.++... |...+.+++... .+.++||||+|++.++.
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~-K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAA-KWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHH-HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 8999999988888888887776665544332 222344455565544 888888888753 35689999999999999
Q ss_pred HHhhC
Q 022724 288 LVLQF 292 (293)
Q Consensus 288 l~~~L 292 (293)
++..|
T Consensus 489 L~~~L 493 (656)
T PRK12898 489 LSALL 493 (656)
T ss_pred HHHHH
Confidence 98876
No 73
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=3.1e-22 Score=188.56 Aligned_cols=247 Identities=15% Similarity=0.255 Sum_probs=178.8
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC-CcEEEEcCCCChhHHHHHHHHHhhhccCCC--------ceeEEEEcC
Q 022724 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSR--------EVQALILSP 109 (293)
Q Consensus 39 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~--------~~~~lil~P 109 (293)
.+|.+-..++. |..+++++|..+.+..+.+ .|+++|||||+|||-.+++.+++.+..+.+ ..+++|++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 45666666664 6778999999999997765 699999999999999999999999865432 348999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC--CCCCCccEEEecchhhh
Q 022724 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEM 187 (293)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~--~~~~~l~~iViDE~h~~ 187 (293)
.++|++++...+.+....+|+.|...+|+.....+. + .+.+|+||||++.--.-++.. -..+-++++|+||+|++
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q--i-eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ--I-EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh--h-hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 999999999999998889999999999987543221 1 346899999998854433321 12245788999999988
Q ss_pred hccccHHHHHHHHhhC-------CCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCccc--
Q 022724 188 LSRGFKDQIYDVYRYL-------PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW-- 258 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l-------~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 258 (293)
.|. .+..++.+..+. ...++++++|||+|+. .+....+.-++..+.....+..+..+.|.++.+...+.
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 544 455555544433 2478999999999985 23222223344444444455666778888888876542
Q ss_pred HHHHH-----HHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 259 KFDTL-----CDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 259 k~~~l-----~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+.+++ ...++....+++|||+++|+++-+.|+++
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aI 566 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAI 566 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHH
Confidence 22232 23334445579999999999999988764
No 74
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.4e-21 Score=185.47 Aligned_cols=178 Identities=22% Similarity=0.286 Sum_probs=145.3
Q ss_pred HHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
.....+|. +.++|++++..+..|.+++++||||+|||+....++...+.. +.+++|..|.++|.+|.++.+.....
T Consensus 112 ~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---~qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 112 PAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---GQRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred HHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---CCceEeccchhhhhhhHHHHHHHHhh
Confidence 33456776 999999999999999999999999999999988888777665 34699999999999999998876544
Q ss_pred cCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCC
Q 022724 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (293)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~ 206 (293)
...-.+....|+.+.. .+..++|.|-+.|-+++.++...+..+.+||+||+|.|.+...+-..+.++-.++..
T Consensus 188 dv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 188 DVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 3322345666666543 457899999999999999999999999999999999999998999999999999999
Q ss_pred ccEEEEEeecChhHHHHHHhc---CCCCEEEEe
Q 022724 207 LQVVLISATLPHEILEMTTKF---MTDPVKILV 236 (293)
Q Consensus 207 ~q~v~~SAt~~~~~~~~~~~~---~~~~~~~~~ 236 (293)
.++|++|||+|+. .++..|. -..|..+..
T Consensus 261 v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~ 292 (1041)
T COG4581 261 VRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVS 292 (1041)
T ss_pred CcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEe
Confidence 9999999999886 3333333 234444444
No 75
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=5.2e-21 Score=166.69 Aligned_cols=167 Identities=16% Similarity=0.175 Sum_probs=138.4
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q 022724 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (293)
Q Consensus 53 ~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (293)
.-.++.+|.......+.+ |++++.|||.|||+++++.+...+...++ ++|+++||+.|+.|..+.|+++..-..-.+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 346888999888777665 99999999999999999988888877543 899999999999999999999887777788
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
..++|.....+....|..+ +|+|+||+.+.+-+..+.+++.++.++||||||+...+.-.-.+......-.+++.++++
T Consensus 90 ~~ltGev~p~~R~~~w~~~-kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 90 AALTGEVRPEEREELWAKK-KVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred eeecCCCChHHHHHHHhhC-CEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEE
Confidence 8999998888777777654 899999999999999999999999999999999986554333343333334467899999
Q ss_pred EeecChhHHHH
Q 022724 213 SATLPHEILEM 223 (293)
Q Consensus 213 SAt~~~~~~~~ 223 (293)
|||+..+.+..
T Consensus 169 TASPGs~~ekI 179 (542)
T COG1111 169 TASPGSDLEKI 179 (542)
T ss_pred ecCCCCCHHHH
Confidence 99997765543
No 76
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=7.4e-22 Score=185.20 Aligned_cols=148 Identities=18% Similarity=0.304 Sum_probs=131.0
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEE
Q 022724 36 DAMGIKDDLLRGIY-----QYGFEKP---SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (293)
Q Consensus 36 ~~~~l~~~i~~~l~-----~~~~~~~---~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil 107 (293)
+.+++..++...+. .+||..| +|+|.++++.+..+++++..++||+|||++|++|++..+... ..++||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG---KPVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---CCeEEE
Confidence 45678888888876 6799999 999999999999999999999999999999999999877643 248899
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCCCCCC-------CccEE
Q 022724 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKTLRTR-------AIKLL 179 (293)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~~~~~~-------~l~~i 179 (293)
+|+++||.|..+.+..+.+.+++++..+.||.+...+...+ +++|+|+||++| .++++.+.+.++ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999999888776555 489999999999 999998766655 56899
Q ss_pred Eecchhhhh
Q 022724 180 VLDESDEML 188 (293)
Q Consensus 180 ViDE~h~~~ 188 (293)
||||||.|+
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999986
No 77
>PRK09694 helicase Cas3; Provisional
Probab=99.87 E-value=9.5e-21 Score=180.79 Aligned_cols=238 Identities=14% Similarity=0.086 Sum_probs=143.7
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccC--Cc
Q 022724 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NI 130 (293)
Q Consensus 53 ~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~--~~ 130 (293)
...|+|+|+.+-.....+..+++.+|||+|||.+++..+...+. .....+++|..||++.+++++++++++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~-~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID-QGLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34799999988655445678999999999999998776654333 3334589999999999999999998643322 34
Q ss_pred eEEEEECCcchHHHHH--------------------HHh----c---CCcEEEeChHHHHHHHhc-CCCCCCCc----cE
Q 022724 131 QAHACVGGKSVGEDIR--------------------KLE----H---GVHVVSGTPGRVCDMIKR-KTLRTRAI----KL 178 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~--------------------~~~----~---~~~ilV~Tp~~l~~~l~~-~~~~~~~l----~~ 178 (293)
++...+|......... .+. + -.+|+|||+++++..+-. +...++.+ ++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 5666776543221100 111 1 158999999999863322 22222333 48
Q ss_pred EEecchhhhhccccHHHHHHHHhhCC-CCccEEEEEeecChhHHHHHHhcCCCC----------EEEEecC---Ccc--c
Q 022724 179 LVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDP----------VKILVKR---DEL--T 242 (293)
Q Consensus 179 iViDE~h~~~~~~~~~~~~~i~~~l~-~~~q~v~~SAt~~~~~~~~~~~~~~~~----------~~~~~~~---~~~--~ 242 (293)
|||||+|.+ +......+..+++.+. ...++|+||||+|....+.+...+... ....... ... .
T Consensus 443 vIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 443 LIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 999999987 3434455566665543 467899999999988776443322110 0000000 000 0
Q ss_pred C----CCceEEEE--Ee--cCcccHHHHHHHHHhh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 243 L----EGIKQFFV--AV--EREEWKFDTLCDLYDT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 243 ~----~~i~~~~~--~~--~~~~~k~~~l~~l~~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
. ....+.+. .. .........+..+++. ..+++++|||||++.|+.+++.|
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L 580 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRL 580 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHH
Confidence 0 00111111 11 1111123344444443 34679999999999999999876
No 78
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.87 E-value=1.7e-20 Score=174.77 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=100.5
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|. .|++.|......+.+| .++.++||+|||++|++|++..... +..++|++|+++||.|..+.+..+...+|+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 354 4555555555544444 6999999999999999998766554 346999999999999999999999999999
Q ss_pred eEEEEECCc---chHHHHHHHhcCCcEEEeChHHH-HHHHhc------CCCCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGK---SVGEDIRKLEHGVHVVSGTPGRV-CDMIKR------KTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~---~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~------~~~~~~~l~~iViDE~h~~~ 188 (293)
++...+++. ......+....+++|+++||+++ ..+++. ....++.+.++|+||||.++
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 998877652 12233334445789999999999 455533 23456889999999999985
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.86 E-value=7.2e-20 Score=172.90 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=119.0
Q ss_pred CCcHHHHHHHHhhhcC---CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q 022724 55 KPSAIQQRAVMPIIKG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~---~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (293)
.+++.|+++++.+.++ +++++.++||+|||.+|+.++...+.. +.+++|++|+++|+.|+.+.+++.. +.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 789999999999999999887777654 5689999999999999999888643 567
Q ss_pred EEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc-----c-HHHHHHHHh
Q 022724 132 AHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----F-KDQIYDVYR 201 (293)
Q Consensus 132 ~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~-----~-~~~~~~i~~ 201 (293)
+..++|+.+..+..+.+ ...++|+|+|+..+. ..+.++++|||||+|...-.. | ...+. +.+
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HHH
Confidence 88899987765554333 245799999997653 347889999999999764221 1 12222 233
Q ss_pred hCCCCccEEEEEeecChhHHHHH
Q 022724 202 YLPPDLQVVLISATLPHEILEMT 224 (293)
Q Consensus 202 ~l~~~~q~v~~SAt~~~~~~~~~ 224 (293)
....+.+++++|||++.......
T Consensus 290 a~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHH
Confidence 33468899999999875544443
No 80
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=3.6e-20 Score=174.07 Aligned_cols=131 Identities=16% Similarity=0.284 Sum_probs=109.4
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
+|. .|+++|..+.+.+.+|+ +..+.||+|||+++++|++..... |.++.|++|+++||.|.++.+..+...+|+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 465 69999999999998887 999999999999999999865554 568999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~~------~~~~~l~~iViDE~h~~~ 188 (293)
++....|+.+...+.+.. .+++|+++||+.+ .++++.+. ..++.+.++||||+|.++
T Consensus 149 ~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred eEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 999999998733333333 4589999999999 45554432 356889999999999975
No 81
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=157.69 Aligned_cols=249 Identities=16% Similarity=0.228 Sum_probs=171.4
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 33 TSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
..-+++|++.+..+-|++ +..+.++|.|..+++....|++.+++.|||.||++||.+|++-. ...++++||..
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~pli 144 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLI 144 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhH
Confidence 345678999998888875 56779999999999999999999999999999999999998753 34799999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEECCcchHHHH---HHH---hcCCcEEEeChHHHHH---HHhc--CCCCCCCccEEE
Q 022724 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKL---EHGVHVVSGTPGRVCD---MIKR--KTLRTRAIKLLV 180 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~ilV~Tp~~l~~---~l~~--~~~~~~~l~~iV 180 (293)
.|++++.-+++.++ +....+..+.+..+.. ..+ .....++..||+++.. ++.. ..+....+.+|-
T Consensus 145 slmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ia 220 (695)
T KOG0353|consen 145 SLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIA 220 (695)
T ss_pred HHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEe
Confidence 99999888887664 4333444444333221 111 1234688899999865 2222 445678889999
Q ss_pred ecchhhhhccc--cHHHHHH--HHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEE-ecC
Q 022724 181 LDESDEMLSRG--FKDQIYD--VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA-VER 255 (293)
Q Consensus 181 iDE~h~~~~~~--~~~~~~~--i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 255 (293)
|||+|+...|| |+.++.. ++++-=++..+++++||.++.+..-.+..+.-...+.+.. ....+++...+.- ...
T Consensus 221 idevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~fnr~nl~yev~qkp~n 299 (695)
T KOG0353|consen 221 IDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GFNRPNLKYEVRQKPGN 299 (695)
T ss_pred ecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-ccCCCCceeEeeeCCCC
Confidence 99999998886 4444432 3444446889999999998887776665543222222211 1222232222221 112
Q ss_pred cccHHHHHHHHHh-hCCCCcEEEEcccchhHHHHHhhC
Q 022724 256 EEWKFDTLCDLYD-TLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 256 ~~~k~~~l~~l~~-~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+++-.+.+..+++ ...+...||||-++++|++++..|
T Consensus 300 ~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~al 337 (695)
T KOG0353|consen 300 EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKAL 337 (695)
T ss_pred hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHH
Confidence 2234445555554 556779999999999999998865
No 82
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.85 E-value=5.6e-20 Score=170.47 Aligned_cols=130 Identities=21% Similarity=0.324 Sum_probs=110.1
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
+|. .|++.|......+.+|+ +..++||+|||+++.+|++-.... |.++.|++|+.+||.|.++.+..+...+|+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 454 49999999999888887 999999999999999999543333 346999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~------~~~~~~l~~iViDE~h~~~ 188 (293)
++..+.|+.+........ .++|++|||++| .++++.+ ...++.+.++||||+|.++
T Consensus 127 sv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 127 SVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred eEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 999999998765444333 479999999999 8888776 3567899999999999985
No 83
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.85 E-value=1.9e-20 Score=171.79 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=128.4
Q ss_pred CCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q 022724 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (293)
..-.++.+|.+.....+ |+|++|++|||+|||++++..+.+++...+. .++|+++|++.|+.|+...+..++.. ..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~ 134 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YS 134 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--cc
Confidence 34468999999998888 9999999999999999999999999888766 58999999999999999666655533 44
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCC-CCCccEEEecchhhhhccc-cHHHHHHHHhhCCCCccE
Q 022724 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLR-TRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQV 209 (293)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~-~~~l~~iViDE~h~~~~~~-~~~~~~~i~~~l~~~~q~ 209 (293)
+....||.........+-...+|+|.||+.+.+.|.++..+ ++.+.++||||||+...+. |...+..++..-....|+
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccE
Confidence 44555553322222233345699999999999988876544 5999999999999987664 444444666555556699
Q ss_pred EEEEeecChhHHH
Q 022724 210 VLISATLPHEILE 222 (293)
Q Consensus 210 v~~SAt~~~~~~~ 222 (293)
+++|||++.+...
T Consensus 215 LgLTASpG~~~~~ 227 (746)
T KOG0354|consen 215 LGLTASPGSKLEQ 227 (746)
T ss_pred EEEecCCCccHHH
Confidence 9999999765444
No 84
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.84 E-value=4.9e-20 Score=175.72 Aligned_cols=235 Identities=15% Similarity=0.178 Sum_probs=165.0
Q ss_pred HHHHH-HHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 022724 44 LLRGI-YQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (293)
Q Consensus 44 i~~~l-~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (293)
....+ ..+|...+++-|.+++..++.|++.++..|||.||++||.+|++-. ++-.|+|.|..+|+..+...+.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhh
Confidence 44443 4579999999999999999999999999999999999999988543 3479999999999998877552
Q ss_pred HhhccCCceEEEEECCcchHHHHH---HHhc---CCcEEEeChHHHHH--HHhcCCCCCCC---ccEEEecchhhhhccc
Q 022724 123 AIGDFINIQAHACVGGKSVGEDIR---KLEH---GVHVVSGTPGRVCD--MIKRKTLRTRA---IKLLVLDESDEMLSRG 191 (293)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~ilV~Tp~~l~~--~l~~~~~~~~~---l~~iViDE~h~~~~~~ 191 (293)
..++....++++....++.. .+.+ .++|+-.||+++.. .+.....++.. +.++||||||+...|+
T Consensus 326 ----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 ----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred ----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 45677778888776654433 3333 46899999999976 22323334444 8999999999999886
Q ss_pred --cHHHHHHHHhhCC--CCccEEEEEeecChhHHHHHHhcC--CCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHH
Q 022724 192 --FKDQIYDVYRYLP--PDLQVVLISATLPHEILEMTTKFM--TDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265 (293)
Q Consensus 192 --~~~~~~~i~~~l~--~~~q~v~~SAt~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 265 (293)
|+..+..+..... +...++++|||.+..+..-+-..+ .++..+... ..+.++...+. .+........+..
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s---fnR~NL~yeV~-~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS---FNRPNLKYEVS-PKTDKDALLDILE 477 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc---CCCCCceEEEE-eccCccchHHHHH
Confidence 6666655433322 358999999999988887555443 345533222 22233333322 2221223333333
Q ss_pred HHh-hCCCCcEEEEcccchhHHHHHhhC
Q 022724 266 LYD-TLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 266 l~~-~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+ .+.....||||.++.+|+.++..|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L 505 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVL 505 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHH
Confidence 343 455679999999999999998765
No 85
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.84 E-value=9.8e-20 Score=168.19 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=136.2
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
..|. |..+|++|+-++.+|.+++|.|+|++|||.++..++.-.. .++.|+||-+|-++|-+|-++.++.-....|
T Consensus 294 ~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg- 368 (1248)
T KOG0947|consen 294 YPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKETFGDVG- 368 (1248)
T ss_pred CCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHHhccccc-
Confidence 3444 8999999999999999999999999999988766553332 2356899999999999999999987665544
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEE
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v 210 (293)
.++|+.+... ...++|.|-+.|-++|.++..-.++++++|+||+|.+.|...+-.++.++-++|...++|
T Consensus 369 ---LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 369 ---LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred ---eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEE
Confidence 6777765543 368999999999999999988899999999999999999889999999999999999999
Q ss_pred EEEeecChhHHHHHHhc
Q 022724 211 LISATLPHEILEMTTKF 227 (293)
Q Consensus 211 ~~SAt~~~~~~~~~~~~ 227 (293)
++|||+|+. .+++.|.
T Consensus 439 lLSATVPN~-~EFA~WI 454 (1248)
T KOG0947|consen 439 LLSATVPNT-LEFADWI 454 (1248)
T ss_pred EEeccCCCh-HHHHHHh
Confidence 999999987 4455443
No 86
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.84 E-value=3.1e-20 Score=158.44 Aligned_cols=237 Identities=16% Similarity=0.193 Sum_probs=154.3
Q ss_pred HHHHHHHH-CCCCCC-cHHHHHHHHhhhcC-CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 022724 43 DLLRGIYQ-YGFEKP-SAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (293)
Q Consensus 43 ~i~~~l~~-~~~~~~-~~~Q~~~~~~i~~~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 119 (293)
.+.++|++ +|+..+ ++.|.+++..+.++ +|+.|++|||+||++||.+|.+-. +...|++.|..+|..++.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHH
Confidence 56677776 477755 89999999998865 699999999999999999998764 3479999999999999988
Q ss_pred HHHHhhccCCceEEEEECCcchHHHHHHH------hcCCcEEEeChHHHHHHH----hcCCCCCCCccEEEecchhhhhc
Q 022724 120 VILAIGDFINIQAHACVGGKSVGEDIRKL------EHGVHVVSGTPGRVCDMI----KRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ilV~Tp~~l~~~l----~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
.+..+. +++..+++..+..+..+.+ .....++--||+....-. -++...-..+.++|+||||+..+
T Consensus 80 HL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 80 HLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred HHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh
Confidence 777653 3444455555544433322 223468888998775422 12222345589999999999998
Q ss_pred cc--cHHHHHH---HHhhCCCCccEEEEEeecChhHHHHHH--hcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHH
Q 022724 190 RG--FKDQIYD---VYRYLPPDLQVVLISATLPHEILEMTT--KFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262 (293)
Q Consensus 190 ~~--~~~~~~~---i~~~l~~~~q~v~~SAt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 262 (293)
|| |+.++.. +.+.+ ....-++++||.++.+++-+- ..+.+|+.+.-.+.- ..++..-...-+...+-+..
T Consensus 156 WGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~F--R~NLFYD~~~K~~I~D~~~~ 232 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTF--RDNLFYDNHMKSFITDCLTV 232 (641)
T ss_pred hccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcch--hhhhhHHHHHHHHhhhHhHh
Confidence 86 5655544 34444 467889999999988877433 334566554332110 01100000000011122333
Q ss_pred HHHHHhhC-------------CCCcEEEEcccchhHHHHHhhC
Q 022724 263 LCDLYDTL-------------TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 263 l~~l~~~~-------------~~~~~iIF~~s~~~a~~l~~~L 292 (293)
|.++.... ..+..||||.|+++|++++-.|
T Consensus 233 LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l 275 (641)
T KOG0352|consen 233 LADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIML 275 (641)
T ss_pred HHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHh
Confidence 44433211 1348999999999999998765
No 87
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.82 E-value=8.8e-19 Score=171.10 Aligned_cols=215 Identities=20% Similarity=0.273 Sum_probs=133.5
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHH-HHhhhccCCCceeEEEEcCC----HHHHHHHHHHHHH-hhccCCc
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT-VCQTVDTSSREVQALILSPT----RELATQTEKVILA-IGDFINI 130 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~-~~~~l~~~~~~~~~lil~P~----~~l~~q~~~~~~~-~~~~~~~ 130 (293)
+..-.+++..+.+++.++|+|+||||||. .+| ++....... ...+++.-|. ++++.++.+.+.. ++...|+
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGV-KGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 44444666777778888999999999998 355 333332221 1244445585 4666666665553 3433343
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhh-hhccccHH-HHHHHHhhCCCCcc
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLPPDLQ 208 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~-~~~~~~~~-~~~~i~~~l~~~~q 208 (293)
.+. . .. ...++++|+++||+.|++.+....+ ++++++|||||+|. +++.++.. .+..++.. .+..|
T Consensus 153 ~vr----f---~~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlK 220 (1294)
T PRK11131 153 KVR----F---ND---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLK 220 (1294)
T ss_pred eec----C---cc---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CCCce
Confidence 321 1 11 1234679999999999998876544 89999999999994 66665543 23333332 24689
Q ss_pred EEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcc-----cHHHHHHHHHh---hCCCCcEEEEcc
Q 022724 209 VVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE-----WKFDTLCDLYD---TLTITQAVIFCN 280 (293)
Q Consensus 209 ~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~k~~~l~~l~~---~~~~~~~iIF~~ 280 (293)
+|+||||++. ..+.+.+...|. +.+... ...+..+|....... +....+...+. ....+.+||||+
T Consensus 221 vILmSATid~--e~fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 221 VIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred EEEeeCCCCH--HHHHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999975 355555554553 444322 234566666553321 12222332222 234579999999
Q ss_pred cchhHHHHHhhC
Q 022724 281 TKRKVLLLVLQF 292 (293)
Q Consensus 281 s~~~a~~l~~~L 292 (293)
+.++++.+++.|
T Consensus 295 g~~EIe~lae~L 306 (1294)
T PRK11131 295 GEREIRDTADAL 306 (1294)
T ss_pred CHHHHHHHHHHH
Confidence 999999998876
No 88
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.82 E-value=1.4e-18 Score=132.47 Aligned_cols=144 Identities=35% Similarity=0.523 Sum_probs=113.1
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
+++++.+|||+|||..++..+....... ...+++|++|++.++.|+.+.+...... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 4789999999999999988887776653 3458999999999999999999887665 6777777777666555555566
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeec
Q 022724 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 151 ~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
+.+|+++|++.+..............+++|+||+|.+....................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999987777655667889999999999976554443223344455788999999995
No 89
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=7e-19 Score=164.00 Aligned_cols=221 Identities=17% Similarity=0.135 Sum_probs=139.7
Q ss_pred CCcHHHHHHHHhhhc-C--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q 022724 55 KPSAIQQRAVMPIIK-G--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~-~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (293)
.++|+|.+++..+.. | ++.+++.|||+|||+..+..+.. + +.++|||||+..|+.|+.+.+.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 589999999999874 4 47899999999999988765543 2 2369999999999999999999886444445
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc--------CCCCCCCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~--------~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
+..+.|+.... ......|+|+|++.+.....+ ..+.-..+++||+||+|++.... +..++..+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHHHhc
Confidence 55555543221 112358999999877543221 12233568899999999985433 44445544
Q ss_pred CCCccEEEEEeecChh--HHHHHHhcCCCCEEEEecCCcc----cCCCceEEEEEec----------------------C
Q 022724 204 PPDLQVVLISATLPHE--ILEMTTKFMTDPVKILVKRDEL----TLEGIKQFFVAVE----------------------R 255 (293)
Q Consensus 204 ~~~~q~v~~SAt~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~----------------------~ 255 (293)
. ....+++|||+... ....+..++ .|..+..+..+. -...+.-..+.|+ .
T Consensus 400 ~-a~~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 Q-AHCKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred C-cCcEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 3 45689999998532 111222222 233332221110 0011111111111 1
Q ss_pred cccHHHHHHHHHhhC--CCCcEEEEcccchhHHHHHhhC
Q 022724 256 EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 256 ~~~k~~~l~~l~~~~--~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...|...+..+++.+ .+.++||||++...+..++..|
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L 516 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL 516 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc
Confidence 123566666677654 6679999999999999998765
No 90
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=3.7e-19 Score=160.88 Aligned_cols=168 Identities=18% Similarity=0.259 Sum_probs=137.8
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
.+.|+|+.++..+-++.+++|.|.|++|||.++..++...+.. .-|+||-.|-++|-+|-++.+..=++. |..
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~D----VGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKD----VGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcc----cce
Confidence 4789999999999999999999999999999988888777765 358999999999999999988754444 344
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
.+|+.... .....+|.|-+.|-.++.++.--.+.+.++|+||+|.|-|...+-.++.-+-.++++.+.+++||
T Consensus 202 MTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 55555433 34578999999999999999888999999999999999888777778888888999999999999
Q ss_pred ecChhHH--HHHHhcCCCCEEEEe
Q 022724 215 TLPHEIL--EMTTKFMTDPVKILV 236 (293)
Q Consensus 215 t~~~~~~--~~~~~~~~~~~~~~~ 236 (293)
|+|++.+ +++...-..|.++..
T Consensus 275 TiPNA~qFAeWI~~ihkQPcHVVY 298 (1041)
T KOG0948|consen 275 TIPNARQFAEWICHIHKQPCHVVY 298 (1041)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEe
Confidence 9999743 244444456666544
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.8e-18 Score=161.49 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
.|++.|--.--.+..| -+..++||+|||++|.+|++..... |..+.|++|+++||.|.++.+..+...+|+++..
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 3777776644444444 4889999999999999999977654 3468999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC-CCCC-----CCccEEEecchhhhh
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TLRT-----RAIKLLVLDESDEML 188 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~-~~~~-----~~l~~iViDE~h~~~ 188 (293)
+.|+.+.......+ .++|+++||++| .++++.+ .+++ +.+.++||||+|.++
T Consensus 157 i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 157 IYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 99998776654444 579999999999 8888876 3444 689999999999985
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.79 E-value=1.9e-18 Score=156.01 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=101.8
Q ss_pred CCCcHHHHHHHHhhhc----CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 54 EKPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~----~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
..++++|++++..+.+ ++..+++.|||+|||..++..+... +.+++||||+++|+.|+.+.+.+.....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cCCEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 3599999999999988 8899999999999998877665443 2249999999999999987666544322
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccE
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~ 209 (293)
..+..+.++..... . ..|.|+|.+.+........+...++++||+||+|++....+......+... ..+
T Consensus 108 ~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~----~~~ 176 (442)
T COG1061 108 DEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAA----YPR 176 (442)
T ss_pred cccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcc----cce
Confidence 12223333322111 0 369999998887742112333457899999999999766544433333222 229
Q ss_pred EEEEeecCh
Q 022724 210 VLISATLPH 218 (293)
Q Consensus 210 v~~SAt~~~ 218 (293)
+++|||++.
T Consensus 177 LGLTATp~R 185 (442)
T COG1061 177 LGLTATPER 185 (442)
T ss_pred eeeccCcee
Confidence 999999753
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=7.6e-18 Score=158.29 Aligned_cols=129 Identities=20% Similarity=0.329 Sum_probs=107.3
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHH-hhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-QTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~-~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.|. .|++.|--.--.+.+|+ +..+.||+|||+++.+|++ ..+ . |..+-|++|+..||.|-.+.+..+...+|
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~---G~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-T---GKGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-c---CCCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 454 48888888776666665 8999999999999999996 554 3 23467999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCCCccEEEecchhhhh
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEML 188 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~~------~~~~~l~~iViDE~h~~~ 188 (293)
+++..+.++.+..++...+ .++|+++||..+ .++++.+. ...+.+.++||||+|.++
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999998877665554 379999999999 88887754 246789999999999985
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=2e-17 Score=151.30 Aligned_cols=136 Identities=21% Similarity=0.191 Sum_probs=97.5
Q ss_pred EEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----h
Q 022724 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----E 149 (293)
Q Consensus 74 li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 149 (293)
++.||||+|||.+|+..+.+.+.. +.+++|++|+++|+.|+.+.+++.. +.++..++++.+..+..+.+ .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999997766555543 5589999999999999999888643 45778888887665543333 2
Q ss_pred cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc-----c-HHHHHHHHhhCCCCccEEEEEeecChhHHHH
Q 022724 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----F-KDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (293)
Q Consensus 150 ~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~-----~-~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~ 223 (293)
...+|+|||+..+. ..+.++++|||||.|...-++ | ...+...... ..+.++|++|||++.+....
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHHHHHH
Confidence 45789999997653 347889999999999865221 1 1223333333 35789999999976544333
No 95
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.76 E-value=1.1e-16 Score=145.30 Aligned_cols=231 Identities=18% Similarity=0.212 Sum_probs=162.0
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHHHHHhhhcC------CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 39 GIKDDLLRGI-YQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 39 ~l~~~i~~~l-~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
+...++.+.+ ..+.|. +|..|++++..|..+ .+-+++|.-|||||.+++++++..+.. |.++..++||.
T Consensus 246 ~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~Q~ALMAPTE 321 (677)
T COG1200 246 PANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GYQAALMAPTE 321 (677)
T ss_pred CccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CCeeEEeccHH
Confidence 4455555554 556666 999999999999854 478999999999999999999988877 67999999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHH---HHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
-||+|-++.+.++....|+++..+.|.....+... .+.+ ..+|+|||- .|-+....++++.++|+||-|++
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHRF 396 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHRF 396 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEeccccc
Confidence 99999999999999999999999999876554433 3334 489999995 44455677999999999999997
Q ss_pred hccccHHHHHHHHhhCCC-CccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHH
Q 022724 188 LSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l~~-~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 266 (293)
.-. =+..+..-.. .+.++.||||+-|..-.+. .+.+-..-.++....-+..|.-..+..+..+.-++.+..-
T Consensus 397 GV~-----QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~e 469 (677)
T COG1200 397 GVH-----QRLALREKGEQNPHVLVMTATPIPRTLALT--AFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREE 469 (677)
T ss_pred cHH-----HHHHHHHhCCCCCcEEEEeCCCchHHHHHH--HhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHH
Confidence 422 2223333344 5789999999866544433 3333222222222222233555555443333223333333
Q ss_pred HhhCCCCcEEEEcccchhHHH
Q 022724 267 YDTLTITQAVIFCNTKRKVLL 287 (293)
Q Consensus 267 ~~~~~~~~~iIF~~s~~~a~~ 287 (293)
+. .+.++.|.|+-+++.+.
T Consensus 470 i~--~GrQaY~VcPLIeESE~ 488 (677)
T COG1200 470 IA--KGRQAYVVCPLIEESEK 488 (677)
T ss_pred HH--cCCEEEEEecccccccc
Confidence 33 56799999999887763
No 96
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.75 E-value=1.8e-17 Score=132.67 Aligned_cols=152 Identities=19% Similarity=0.171 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHhhhc-------CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 55 KPSAIQQRAVMPIIK-------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~-------~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
.++++|.+++..+.+ ++++++.+|||+|||.+++..+..... ++++++|+..|+.|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 489999999999873 589999999999999888754444433 8999999999999999999665433
Q ss_pred CCceE-----------EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC-----------CCCCCccEEEecchh
Q 022724 128 INIQA-----------HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-----------LRTRAIKLLVLDESD 185 (293)
Q Consensus 128 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~-----------~~~~~l~~iViDE~h 185 (293)
..... ....................+++++|.+.+........ ......++||+||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 21100 00111111112222234566899999999988765421 123467899999999
Q ss_pred hhhccccHHHHHHHHhhCCCCccEEEEEeecC
Q 022724 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (293)
Q Consensus 186 ~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~ 217 (293)
++....- ...+.. .+...+++||||+.
T Consensus 157 ~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9865431 333333 45778999999975
No 97
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.74 E-value=1.3e-17 Score=154.87 Aligned_cols=174 Identities=14% Similarity=0.167 Sum_probs=138.7
Q ss_pred CCHHHHH-HHHHCCCCCCcHHHHHHHH--hhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHH
Q 022724 40 IKDDLLR-GIYQYGFEKPSAIQQRAVM--PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (293)
Q Consensus 40 l~~~i~~-~l~~~~~~~~~~~Q~~~~~--~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q 116 (293)
+++.+.+ ..+..|....+.||.+++. .++.++|++...||+.|||+++.+-++..+... +..++++.|....+.+
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv~E 284 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIVQE 284 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehhHH
Confidence 3444433 3456688899999999884 577899999999999999999998888876654 3368999999999999
Q ss_pred HHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc--CCCCCCCccEEEecchhhhhccccHH
Q 022724 117 TEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKD 194 (293)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~--~~~~~~~l~~iViDE~h~~~~~~~~~ 194 (293)
-...+..+....|+.+-.++|..+..... +.-++.|+|.++...++.. ...++..+++|||||.|++.+.+.+.
T Consensus 285 k~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~ 360 (1008)
T KOG0950|consen 285 KISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGA 360 (1008)
T ss_pred HHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccch
Confidence 99999999999999998888766544332 2348999999998876654 33456779999999999999999888
Q ss_pred HHHHHHhhC-----CCCccEEEEEeecChh
Q 022724 195 QIYDVYRYL-----PPDLQVVLISATLPHE 219 (293)
Q Consensus 195 ~~~~i~~~l-----~~~~q~v~~SAt~~~~ 219 (293)
.++.++.++ ....|+|+||||+++.
T Consensus 361 ~lE~~l~k~~y~~~~~~~~iIGMSATi~N~ 390 (1008)
T KOG0950|consen 361 ILELLLAKILYENLETSVQIIGMSATIPNN 390 (1008)
T ss_pred HHHHHHHHHHHhccccceeEeeeecccCCh
Confidence 888776664 2347899999999863
No 98
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.74 E-value=4.8e-16 Score=152.61 Aligned_cols=226 Identities=17% Similarity=0.199 Sum_probs=139.0
Q ss_pred CCCCCCcHHHH---HHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hhc
Q 022724 51 YGFEKPSAIQQ---RAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGD 126 (293)
Q Consensus 51 ~~~~~~~~~Q~---~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~ 126 (293)
..|...-|+.. +++..+.+++.++|+|+||||||... ..++...... ...++++.-|.+--+..+..++.+ ++.
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTql-Pq~lle~~~~-~~~~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQL-PKICLELGRG-SHGLIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHH-HHHHHHcCCC-CCceEecCCccHHHHHHHHHHHHHHhCC
Confidence 34554445544 56666777788999999999999743 2222222211 223566677999888888876654 333
Q ss_pred cCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhh-hhccccHH-HHHHHHhhCC
Q 022724 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLP 204 (293)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~-~~~~~~~~-~~~~i~~~l~ 204 (293)
..|-.+.......+ . ......|.++|++.|++.+.... .+.++++|||||+|. .++.++.- .+..++...
T Consensus 138 ~lG~~VGY~vR~~~---~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r- 209 (1283)
T TIGR01967 138 PLGEKVGYKVRFHD---Q---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR- 209 (1283)
T ss_pred CcceEEeeEEcCCc---c---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-
Confidence 33433333221111 1 12456899999999999876643 489999999999994 66655543 345554443
Q ss_pred CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCc-----ccHHHHHHHHHh---hCCCCcEE
Q 022724 205 PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE-----EWKFDTLCDLYD---TLTITQAV 276 (293)
Q Consensus 205 ~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~l~~---~~~~~~~i 276 (293)
+..|+|+||||+.. ..+.+.+...|. +.+... ...+..+|...... .++...+...+. ....+.+|
T Consensus 210 pdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr---~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdIL 283 (1283)
T TIGR01967 210 PDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDIL 283 (1283)
T ss_pred CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCC---cccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEE
Confidence 57899999999974 445555444443 444322 12344455443221 123333333332 22457999
Q ss_pred EEcccchhHHHHHhhC
Q 022724 277 IFCNTKRKVLLLVLQF 292 (293)
Q Consensus 277 IF~~s~~~a~~l~~~L 292 (293)
|||++.++++.+++.|
T Consensus 284 VFLpg~~EI~~l~~~L 299 (1283)
T TIGR01967 284 IFLPGEREIRDAAEIL 299 (1283)
T ss_pred EeCCCHHHHHHHHHHH
Confidence 9999999999998765
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.73 E-value=3.8e-17 Score=160.38 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=106.2
Q ss_pred CCcHHHHHHHHhhh----c-CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 55 KPSAIQQRAVMPII----K-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~-~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.++++|.+|+..+. + .+..+++++||+|||.+++ .++..+.......++|||+|+.+|+.|..+.++.+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 48999999998775 2 3689999999999998744 3445554444456999999999999999999887642222
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-----CCCCCCCccEEEecchhhhhc------c--------
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-----KTLRTRAIKLLVLDESDEMLS------R-------- 190 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-----~~~~~~~l~~iViDE~h~~~~------~-------- 190 (293)
......++...... ........|+|+|.+++...+.. ..+...++++|||||||+-.. .
T Consensus 492 ~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111110010 01123468999999999875432 124567889999999998531 0
Q ss_pred -ccHHHHHHHHhhCCCCccEEEEEeecCh
Q 022724 191 -GFKDQIYDVYRYLPPDLQVVLISATLPH 218 (293)
Q Consensus 191 -~~~~~~~~i~~~l~~~~q~v~~SAt~~~ 218 (293)
.+...+..++.+. +...|++|||+-.
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r 596 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPAL 596 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCcc
Confidence 1134566666655 3578999999854
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.72 E-value=7e-16 Score=147.38 Aligned_cols=235 Identities=19% Similarity=0.179 Sum_probs=174.3
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHHHHHhhhcC------CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 39 GIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 39 ~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~i~~~------~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
+.+.+.++.+.+ +.|. -|+-|..|+..+.+. +|-+|||--|-|||.+++-+++..+.. |.++.+|+||-
T Consensus 578 ~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVPTT 653 (1139)
T COG1197 578 PPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVPTT 653 (1139)
T ss_pred CCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcccH
Confidence 345555666554 3444 799999999998843 589999999999999999999888776 57999999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh----cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
-||+|-++.++.-+.++.+++..++.-.+..++...+. ...||+|||- -|-+..+.+++++++||||-|++
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqRF 728 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQRF 728 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEechhhc
Confidence 99999999999999999999999888777766654442 4679999995 33345678999999999999997
Q ss_pred hccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHH
Q 022724 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 267 (293)
. ....+. ++.+..+.-++-||||+-|..-.+.-..+++...+..++.+. ..++-++..-++.--+...+.++
T Consensus 729 G-Vk~KEk----LK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R--~pV~T~V~~~d~~~ireAI~REl- 800 (1139)
T COG1197 729 G-VKHKEK----LKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR--LPVKTFVSEYDDLLIREAILREL- 800 (1139)
T ss_pred C-ccHHHH----HHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC--cceEEEEecCChHHHHHHHHHHH-
Confidence 4 223333 444456778999999997777777777777777776665443 23444444333222222223332
Q ss_pred hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 268 DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 268 ~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+++++...+|.++..+.+++.|
T Consensus 801 --~RgGQvfYv~NrV~~Ie~~~~~L 823 (1139)
T COG1197 801 --LRGGQVFYVHNRVESIEKKAERL 823 (1139)
T ss_pred --hcCCEEEEEecchhhHHHHHHHH
Confidence 34689999999999988888765
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.71 E-value=4.3e-16 Score=145.75 Aligned_cols=232 Identities=17% Similarity=0.232 Sum_probs=151.7
Q ss_pred HHHHHC-CCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 46 RGIYQY-GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 46 ~~l~~~-~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
+.+.+. |+ .|+..|+-....+.+|+++-+.||||.|||.-.++..+.. ..+|.+++|++||..|+.|+.+.++++
T Consensus 73 ~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~---a~kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 73 EFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL---AKKGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH---HhcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 333433 55 7999999999999999999999999999995444333332 223569999999999999999999998
Q ss_pred hccCC-ceEEE-EECCcchHH---HHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc-------
Q 022724 125 GDFIN-IQAHA-CVGGKSVGE---DIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG------- 191 (293)
Q Consensus 125 ~~~~~-~~~~~-~~~~~~~~~---~~~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~------- 191 (293)
....+ ..+.. +|+..+..+ ....+. .+.||+|+|.+-|..-... +.--+++++.+|++|.++..+
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred HhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHHH
Confidence 86665 44433 555544333 233343 4689999998655543322 112467999999999987543
Q ss_pred ----cHHH-------HHHHHhhC------------------------CCCccEEEEEeecChhHH--HHHHhcCCCCEEE
Q 022724 192 ----FKDQ-------IYDVYRYL------------------------PPDLQVVLISATLPHEIL--EMTTKFMTDPVKI 234 (293)
Q Consensus 192 ----~~~~-------~~~i~~~l------------------------~~~~q~v~~SAt~~~~~~--~~~~~~~~~~~~~ 234 (293)
|... +..+...+ .+..++|+.|||..+.-. .+.+.++ .+
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl----gF 302 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL----GF 302 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh----CC
Confidence 1110 11111111 134689999999855421 2333332 23
Q ss_pred EecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEccc---chhHHHHHhhC
Q 022724 235 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT---KRKVLLLVLQF 292 (293)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s---~~~a~~l~~~L 292 (293)
.+........+|...|... .-...+..+++... .-.|||++. ++.+++++++|
T Consensus 303 evG~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~L 358 (1187)
T COG1110 303 EVGSGGEGLRNIVDIYVES----ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYL 358 (1187)
T ss_pred ccCccchhhhheeeeeccC----ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHH
Confidence 4444445556677776655 24445556666654 478999999 99999998875
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.70 E-value=3e-15 Score=125.02 Aligned_cols=216 Identities=17% Similarity=0.125 Sum_probs=146.4
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
++++.|+.+-+.+. +.+++++.|-||+|||.+..-.+-..+.. |.++.+.+|....+.+++.+++.-..+ .
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~~--~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFSN--C 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhcc--C
Confidence 68999998777654 56899999999999997755444444433 678999999999999999999876543 4
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEE
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v 210 (293)
.+..++|+.+... ..+++|+|-.+++++ -+.++++||||+|.+.-..-...-..+.+...+..-.|
T Consensus 172 ~I~~Lyg~S~~~f-------r~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYF-------RAPLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchhc-------cccEEEEehHHHHHH-------HhhccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 5677787765332 148999999888774 24578999999998742222233334445555677899
Q ss_pred EEEeecChhHHHHHHhcCCCCEEEEecCCc-ccCCCceEEEEEecCcccHHH------HHHHHHhhC--CCCcEEEEccc
Q 022724 211 LISATLPHEILEMTTKFMTDPVKILVKRDE-LTLEGIKQFFVAVEREEWKFD------TLCDLYDTL--TITQAVIFCNT 281 (293)
Q Consensus 211 ~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~k~~------~l~~l~~~~--~~~~~iIF~~s 281 (293)
++|||.+...+.-+... +...+..+... ..+-.+..+ .++..-..++. .+...+++. .+.+++||+++
T Consensus 238 ylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf-~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~ 314 (441)
T COG4098 238 YLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKF-VWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPE 314 (441)
T ss_pred EEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCce-EEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecc
Confidence 99999998877665443 22223333222 222223333 33433332321 355556543 35699999999
Q ss_pred chhHHHHHhhC
Q 022724 282 KRKVLLLVLQF 292 (293)
Q Consensus 282 ~~~a~~l~~~L 292 (293)
++..+++++.|
T Consensus 315 I~~~eq~a~~l 325 (441)
T COG4098 315 IETMEQVAAAL 325 (441)
T ss_pred hHHHHHHHHHH
Confidence 99999998876
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.67 E-value=9.6e-16 Score=146.36 Aligned_cols=237 Identities=16% Similarity=0.146 Sum_probs=144.0
Q ss_pred CCcHHHHHHHHhhhcC---C-cEEEEcCCCChhHHHHHHHHHhhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 55 KPSAIQQRAVMPIIKG---R-DVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~---~-~~li~~~Tg~GKT~~~~~~~~~~l~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.+.+.|..++..+.+. . .+++.+|||+|||++.+.++...+.. .....+++++.|++.++++++++++.+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 3499999999987743 4 78999999999999999999888776 44567999999999999999999998765554
Q ss_pred ceEEEEECCcchHHHHHH-----H---------hcCCcEEEeChHHHHHHHh-cCCCC-C--CCccEEEecchhhhhccc
Q 022724 130 IQAHACVGGKSVGEDIRK-----L---------EHGVHVVSGTPGRVCDMIK-RKTLR-T--RAIKLLVLDESDEMLSRG 191 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~-----~---------~~~~~ilV~Tp~~l~~~l~-~~~~~-~--~~l~~iViDE~h~~~~~~ 191 (293)
......++.....-.... . ..-..+.++||........ ...+. + --.+.+|+||+|.+.+..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 433322332211110000 0 0012345555554444211 11111 1 123679999999997764
Q ss_pred cHHHHHHHHhhCC-CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCc---ccCCCceEEEE-EecCcccHHHHHHHH
Q 022724 192 FKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE---LTLEGIKQFFV-AVEREEWKFDTLCDL 266 (293)
Q Consensus 192 ~~~~~~~i~~~l~-~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~-~~~~~~~k~~~l~~l 266 (293)
....+..++..+. .+..+|+||||+|+..+..+.........+...... ..-..+.+... ...... ........
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~ 433 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-QEELIELI 433 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh-hHhhhhcc
Confidence 3444444444433 478999999999999999888877654444333110 00011111100 000010 00111111
Q ss_pred Hh-hCCCCcEEEEcccchhHHHHHhhC
Q 022724 267 YD-TLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 267 ~~-~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.. -..+.+++|.|||+..|.+++..|
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~L 460 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKL 460 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHH
Confidence 22 234569999999999999999876
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=6.2e-15 Score=138.83 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=101.7
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
.|++.|--.--.+. +.-+..++||.|||+++.+|++...... ..+.|++|+..||.+..+.+..+...+|+++..
T Consensus 82 ~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~g---~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 82 RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALTG---KGVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhcC---CCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 37777765433333 4458899999999999999998776553 349999999999999999999999999999999
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC-CCCC-----CCccEEEecchhhhh
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TLRT-----RAIKLLVLDESDEML 188 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~-~~~~-----~~l~~iViDE~h~~~ 188 (293)
..++.+....... -.++|+++||+.+ .++|+.+ ..+. +.+.+.||||+|.++
T Consensus 157 i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 157 NVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred ecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 9888775433222 2579999999999 8888776 3333 788999999999986
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.62 E-value=3.1e-14 Score=132.95 Aligned_cols=216 Identities=19% Similarity=0.167 Sum_probs=144.3
Q ss_pred CCCcHHHHHHHHhhhcC----CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 54 EKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~----~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
..+++-|+.+++.+.+. +..++.|.||||||.+|+-.+-..+.. |.++|+|+|.++|..|+..+++..+ |
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---GkqvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GKQVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CCEEEEEeccccchHHHHHHHHHHh---C
Confidence 35788999999998765 679999999999999998877777766 5689999999999999999888754 4
Q ss_pred ceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh---ccc---cHHHHHHH
Q 022724 130 IQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML---SRG---FKDQIYDV 199 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~---~~~---~~~~~~~i 199 (293)
.++..++++-+..+..+.+ .....|+|||-..+. ..++++++|||||-|.-. +++ ...++...
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 6788888887666555444 356789999974333 357899999999999642 111 22333333
Q ss_pred HhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHH-----HHHHHHHhh--CCC
Q 022724 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF-----DTLCDLYDT--LTI 272 (293)
Q Consensus 200 ~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~-----~~l~~l~~~--~~~ 272 (293)
... ..++++|+-|||.+ ++.+..-.-+....+..........-....++.+..+..+. ..+.+.+++ ..+
T Consensus 344 Ra~-~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~g 420 (730)
T COG1198 344 RAK-KENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERG 420 (730)
T ss_pred HHH-HhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcC
Confidence 333 35899999999965 44444432222333333332221112223333444333222 345555532 356
Q ss_pred CcEEEEcccchhH
Q 022724 273 TQAVIFCNTKRKV 285 (293)
Q Consensus 273 ~~~iIF~~s~~~a 285 (293)
+++|+|.|++.-+
T Consensus 421 eQ~llflnRRGys 433 (730)
T COG1198 421 EQVLLFLNRRGYA 433 (730)
T ss_pred CeEEEEEccCCcc
Confidence 7999999998654
No 106
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.60 E-value=2e-14 Score=132.58 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=106.7
Q ss_pred CCcHHHHHHHHhhh----cCC-cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 55 KPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~-~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.|+.+|..|+..+. +|+ .+++++.||+|||..+ ++++..|.+.....|+|+|+-+++|+.|.+..+..+..+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 68999999997654 553 5999999999999764 46778888877778999999999999999998888765432
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-----CCCCCCccEEEecchhhhhccccHHHHHHHHhhCC
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~-----~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~ 204 (293)
.+..+.+.. . ...+.|.|+|.+.+...+... .+...++++|||||||+= .......++.++.
T Consensus 244 -~~n~i~~~~-~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFd 310 (875)
T COG4096 244 -KMNKIEDKK-G-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDYFD 310 (875)
T ss_pred -ceeeeeccc-C-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHHHH
Confidence 222222111 1 114689999999998866553 455677999999999963 3333445666653
Q ss_pred CCccEEEEEeecChh
Q 022724 205 PDLQVVLISATLPHE 219 (293)
Q Consensus 205 ~~~q~v~~SAt~~~~ 219 (293)
. -.++++||+.+.
T Consensus 311 A--~~~gLTATP~~~ 323 (875)
T COG4096 311 A--ATQGLTATPKET 323 (875)
T ss_pred H--HHHhhccCcccc
Confidence 2 233448887653
No 107
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.58 E-value=6.2e-14 Score=132.70 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHhhh----c------CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 55 KPSAIQQRAVMPII----K------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~------~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.++.+|.+++..+. + ++..++..+||||||+..+..+...+ .....+++|||+|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 37899999998764 2 25799999999999988766554333 3344579999999999999999999887
Q ss_pred hccCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcC--CCCCCCc-cEEEecchhhhhccccHHHHHHHH
Q 022724 125 GDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK--TLRTRAI-KLLVLDESDEMLSRGFKDQIYDVY 200 (293)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~--~~~~~~l-~~iViDE~h~~~~~~~~~~~~~i~ 200 (293)
.... . .+..+.......+. ....|+|+|.+++...+... .+...+- -+||+||||+.....+...+ .
T Consensus 317 ~~~~-~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l---~ 387 (667)
T TIGR00348 317 QKDC-A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNL---K 387 (667)
T ss_pred CCCC-C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHH---H
Confidence 5321 0 11112222222332 23589999999998644331 1111111 28999999986433333222 2
Q ss_pred hhCCCCccEEEEEeecC
Q 022724 201 RYLPPDLQVVLISATLP 217 (293)
Q Consensus 201 ~~l~~~~q~v~~SAt~~ 217 (293)
..+ ++...+++|||+-
T Consensus 388 ~~~-p~a~~lGfTaTP~ 403 (667)
T TIGR00348 388 KAL-KNASFFGFTGTPI 403 (667)
T ss_pred hhC-CCCcEEEEeCCCc
Confidence 344 4678999999984
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.57 E-value=3.9e-13 Score=127.54 Aligned_cols=221 Identities=15% Similarity=0.201 Sum_probs=145.5
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hhccCCceEEEE
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHAC 135 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~~ 135 (293)
+....+...++.+++-++|+||||||||...-..+++.-. ..+..+.+.-|.|--|..+.+++.. ++...|-.|.+.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 5556677778888999999999999999776555655544 2234677888999888888887754 555455444443
Q ss_pred ECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh-ccc-cHHHHHHHHhhCCCCccEEEEE
Q 022724 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRG-FKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~-~~~-~~~~~~~i~~~l~~~~q~v~~S 213 (293)
....+ ....+..|-+.|.+.|++.+..... ++.+++|||||+|.=. +-. ....+..++...+...++|.||
T Consensus 130 iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 130 IRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred EEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 32221 1123457999999999998876544 8999999999999721 111 2234555666677679999999
Q ss_pred eecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCccc-HHHHHHHHHh---hCCCCcEEEEcccchhHHHHH
Q 022724 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW-KFDTLCDLYD---TLTITQAVIFCNTKRKVLLLV 289 (293)
Q Consensus 214 At~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-k~~~l~~l~~---~~~~~~~iIF~~s~~~a~~l~ 289 (293)
||+..+ ....++.+.-.+.+.- ..+.+..+|......+. -...+...++ ....+.+|||.+-..+.+.++
T Consensus 203 ATld~~---rfs~~f~~apvi~i~G---R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~ 276 (845)
T COG1643 203 ATLDAE---RFSAYFGNAPVIEIEG---RTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTA 276 (845)
T ss_pred cccCHH---HHHHHcCCCCEEEecC---CccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHH
Confidence 999754 3334444443444432 22345555544443333 3333444443 334679999999999999887
Q ss_pred hhC
Q 022724 290 LQF 292 (293)
Q Consensus 290 ~~L 292 (293)
+.|
T Consensus 277 ~~L 279 (845)
T COG1643 277 EWL 279 (845)
T ss_pred HHH
Confidence 765
No 109
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.54 E-value=2.1e-13 Score=132.90 Aligned_cols=94 Identities=22% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----hhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~----~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~ 115 (293)
+++.....+...||+ +++.|.+.++ .+.+++++++.||||+|||++|++|++.... .+.+++|.+||++|..
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~ 306 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQS 306 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHH
Confidence 345677777778888 8899998666 4557899999999999999999999988765 2458999999999999
Q ss_pred HHHH-HHHHhhccCC--ceEEEEEC
Q 022724 116 QTEK-VILAIGDFIN--IQAHACVG 137 (293)
Q Consensus 116 q~~~-~~~~~~~~~~--~~~~~~~~ 137 (293)
|+.. .+..+.+.++ +++..+.|
T Consensus 307 Ql~~~~~~~l~~~~~~~~~~~~~kG 331 (850)
T TIGR01407 307 QLLEKDIPLLNEILNFKINAALIKG 331 (850)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEc
Confidence 9865 4555544433 44444443
No 110
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.53 E-value=1.4e-13 Score=131.15 Aligned_cols=224 Identities=16% Similarity=0.214 Sum_probs=151.3
Q ss_pred CCCCcHHHHHHHHhhhc-CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-HhhccCCc
Q 022724 53 FEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINI 130 (293)
Q Consensus 53 ~~~~~~~Q~~~~~~i~~-~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~ 130 (293)
|....|+|.++++-+.+ +.++++.+|+|+|||.|+.++++. .....+++++.|..+.+..++..|. ++.+..|.
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 44558999999998764 568999999999999999998887 2234699999999999999988886 47777888
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHH------HHHHHHhhCC
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD------QIYDVYRYLP 204 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~------~~~~i~~~l~ 204 (293)
.+..+.|..+.+-. +....+|+|+||+++-.+ . ..+.++++|.||.|++.+. ++. .++.+-+.+-
T Consensus 1217 ~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~~ 1287 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQLE 1287 (1674)
T ss_pred eEEecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHHHH
Confidence 88888888766532 233458999999998765 2 5678899999999998743 221 1556666677
Q ss_pred CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCccc-CCCceEEEEEecCcccHHHH-----HHHHHh-hCCCCcEEE
Q 022724 205 PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT-LEGIKQFFVAVEREEWKFDT-----LCDLYD-TLTITQAVI 277 (293)
Q Consensus 205 ~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~k~~~-----l~~l~~-~~~~~~~iI 277 (293)
+..+++.+|..+.+. .+++ ++.....++....... |..+.-.............. ...+.+ ...+++++|
T Consensus 1288 k~ir~v~ls~~lana-~d~i--g~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~v 1364 (1674)
T KOG0951|consen 1288 KKIRVVALSSSLANA-RDLI--GASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIV 1364 (1674)
T ss_pred hheeEEEeehhhccc-hhhc--cccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEE
Confidence 889999999998765 3332 2222233333322222 11122111111111111111 111121 124569999
Q ss_pred EcccchhHHHHHhhC
Q 022724 278 FCNTKRKVLLLVLQF 292 (293)
Q Consensus 278 F~~s~~~a~~l~~~L 292 (293)
|+++++.|..++..|
T Consensus 1365 f~p~rk~~~~~a~~~ 1379 (1674)
T KOG0951|consen 1365 FLPTRKHARLVAVDL 1379 (1674)
T ss_pred Eeccchhhhhhhhcc
Confidence 999999999887643
No 111
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.50 E-value=9.7e-14 Score=129.38 Aligned_cols=160 Identities=14% Similarity=0.156 Sum_probs=114.0
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc-eEE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI-QAH 133 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~-~~~ 133 (293)
.|..||++.+..+=.+++.+|+|||.+|||++-.-.+ +++.+.....-+|+++|+++|+.|+...+......... +..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 5899999999999999999999999999997654444 44444444457999999999999998877765433221 111
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc---CCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEE
Q 022724 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (293)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~---~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v 210 (293)
.+.|.... +.+.-.-.|+|+|+-|+.+..++.. ..-...++.++|+||+|.+....-....+.++... .|.++
T Consensus 590 sl~g~ltq--EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQ--EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhH--HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 22222211 1111112589999999999998876 44557899999999999997654444444444443 58899
Q ss_pred EEEeecChh
Q 022724 211 LISATLPHE 219 (293)
Q Consensus 211 ~~SAt~~~~ 219 (293)
++|||+.+.
T Consensus 666 ~LSATigN~ 674 (1330)
T KOG0949|consen 666 VLSATIGNP 674 (1330)
T ss_pred EEecccCCH
Confidence 999999654
No 112
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=2.9e-12 Score=120.57 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=102.9
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|. .|++.|.-.--.+.+|+ +....||+|||+++.+|++..... |..+-+++|+..||.|=++.+..+...+|+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---GKGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---CCCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 454 48999988766676776 899999999999999998877666 557899999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH-HHHhcCC------CCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRKT------LRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~l~~~~------~~~~~l~~iViDE~h~~~ 188 (293)
++..+.++.+..+....+ .+||+-+|...+- ++|+.+. ...+.+.+.||||+|.++
T Consensus 151 ~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred eEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 999998877665544333 4699999987764 3444421 123668999999999974
No 113
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.43 E-value=2.8e-12 Score=119.00 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 64 VMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 64 ~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
...+.+++.+++.+|||+|||++|++|++..+... .+.++||++||++|..|+.+.+..+.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 34455788999999999999999999998876532 24689999999999999999888776
No 114
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.43 E-value=3.2e-12 Score=123.28 Aligned_cols=83 Identities=25% Similarity=0.329 Sum_probs=65.9
Q ss_pred CCCCCCcHHHHHHHHhh----hcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHH-HHHHHHhh
Q 022724 51 YGFEKPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-EKVILAIG 125 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i----~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~-~~~~~~~~ 125 (293)
.||+ +++-|.+....+ .+++++++.|+||+|||++|++|++... .+.++||++||++|++|+ ...+..+.
T Consensus 242 ~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 3555 899999855544 4678899999999999999999988754 246899999999999999 46677777
Q ss_pred ccCCceEEEEECC
Q 022724 126 DFINIQAHACVGG 138 (293)
Q Consensus 126 ~~~~~~~~~~~~~ 138 (293)
+..++++..+.|+
T Consensus 317 ~~~~~~~~~~kg~ 329 (820)
T PRK07246 317 EVFHIDCHSLKGP 329 (820)
T ss_pred HhcCCcEEEEECC
Confidence 7777766665554
No 115
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.42 E-value=2.5e-11 Score=115.27 Aligned_cols=226 Identities=17% Similarity=0.182 Sum_probs=144.9
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hhccCCceEEE
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHA 134 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~~ 134 (293)
.+..+.++++++.+++.++|.|.||+|||.-..-.+++.....+...++++--|.|--|..+++++.+ .+...|-.|..
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 57788889999999999999999999999877777777765555666788888999999999888753 34444444433
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh-ccccHHHHHHHHhhCCCCccEEEEE
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~-~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
-.+..+. ......+++||.+.|++.+.. .-.+..+..+|+||+|.=. +..|.-.+...+-..++..++|+||
T Consensus 254 qvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMS 326 (924)
T KOG0920|consen 254 QVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMS 326 (924)
T ss_pred EEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEee
Confidence 3222211 112257999999999998877 4458899999999999742 1223333333333334789999999
Q ss_pred eecChhHHHHHHhcCCCCEEEEecCCccc----------------CCCceEE------------EEEecCcccHHHHHHH
Q 022724 214 ATLPHEILEMTTKFMTDPVKILVKRDELT----------------LEGIKQF------------FVAVEREEWKFDTLCD 265 (293)
Q Consensus 214 At~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~i~~~------------~~~~~~~~~k~~~l~~ 265 (293)
||+..+ ....|++....+.+.-.... .....++ ......+ .....+.+
T Consensus 327 AT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-id~~Li~~ 402 (924)
T KOG0920|consen 327 ATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPE-IDYDLIED 402 (924)
T ss_pred eecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccc-ccHHHHHH
Confidence 999833 44445544434433211000 0000111 0000111 13334444
Q ss_pred HH----hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 266 LY----DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 266 l~----~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
++ +....+.+|||.+...+...+.+.|
T Consensus 403 li~~I~~~~~~GaILVFLPG~~eI~~~~~~L 433 (924)
T KOG0920|consen 403 LIEYIDEREFEGAILVFLPGWEEILQLKELL 433 (924)
T ss_pred HHHhcccCCCCceEEEEcCCHHHHHHHHHHh
Confidence 43 3334579999999999999988876
No 116
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.42 E-value=3.5e-11 Score=109.01 Aligned_cols=220 Identities=13% Similarity=0.168 Sum_probs=133.6
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-HhhccCCceEEEE
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHAC 135 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~~ 135 (293)
..+-.+.+..+.+++-++|.|+||||||.-.--.+.+.-.. ..| ++-+.-|.|--|..+..+.. +.+..+|-.|...
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~-~~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA-SSG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc-cCC-cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 44555777888889999999999999996432223222222 223 47777799988888776664 4555555544432
Q ss_pred ECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh--hccccHHHHHHHHhhCCCCccEEEEE
Q 022724 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM--LSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~--~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
..-.+.. .....|...|.+.|++-+... -.+++.++||+||||.= ..+-....++.+++.. +..++|+||
T Consensus 131 IRFed~t------s~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimS 202 (674)
T KOG0922|consen 131 IRFEDST------SKDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMS 202 (674)
T ss_pred EEecccC------CCceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEe
Confidence 2111111 123479999999999855443 23789999999999962 1111222333333333 468999999
Q ss_pred eecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHH---hhCCCCcEEEEcccchhHHHHHh
Q 022724 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY---DTLTITQAVIFCNTKRKVLLLVL 290 (293)
Q Consensus 214 At~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~---~~~~~~~~iIF~~s~~~a~~l~~ 290 (293)
||+..+ ....++.+-..+.+. .....+..+|..-+..+.-.+.+...+ ...+++-+|||....++.+.+++
T Consensus 203 ATlda~---kfS~yF~~a~i~~i~---GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~ 276 (674)
T KOG0922|consen 203 ATLDAE---KFSEYFNNAPILTIP---GRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACE 276 (674)
T ss_pred eeecHH---HHHHHhcCCceEeec---CCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Confidence 999743 334444443333333 222345556665444442233333333 34556799999999999998887
Q ss_pred hC
Q 022724 291 QF 292 (293)
Q Consensus 291 ~L 292 (293)
.|
T Consensus 277 ~l 278 (674)
T KOG0922|consen 277 LL 278 (674)
T ss_pred HH
Confidence 64
No 117
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.40 E-value=2.6e-11 Score=117.42 Aligned_cols=158 Identities=18% Similarity=0.083 Sum_probs=96.1
Q ss_pred CCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q 022724 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (293)
.|.|+|.++...+.+. ..+++.-.+|.|||.-+.+.+...+... ...+++|+||. .|..|+...+.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 5999999998777643 4789999999999977765554444443 33489999997 89999988775432 3444
Q ss_pred EEEECCcchHHHHH--HHhcCCcEEEeChHHHHHHH-hcCCCCCCCccEEEecchhhhhcc--ccHHHHHHHHhhCCCCc
Q 022724 133 HACVGGKSVGEDIR--KLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDL 207 (293)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~~~~ilV~Tp~~l~~~l-~~~~~~~~~l~~iViDE~h~~~~~--~~~~~~~~i~~~l~~~~ 207 (293)
..+.++........ .-....+++|++.+.+...- ....+.-..++++||||||++-.. .-......+........
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 33333221110000 00123579999987765411 111122346899999999998521 11112222222222345
Q ss_pred cEEEEEeecC
Q 022724 208 QVVLISATLP 217 (293)
Q Consensus 208 q~v~~SAt~~ 217 (293)
.++++|||+.
T Consensus 307 ~~LLLTATP~ 316 (956)
T PRK04914 307 GVLLLTATPE 316 (956)
T ss_pred CEEEEEcCcc
Confidence 7899999973
No 118
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.38 E-value=9.2e-13 Score=98.24 Aligned_cols=136 Identities=15% Similarity=0.230 Sum_probs=81.5
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
+|+-.++...+|+|||--.+.-++...... +.|+|+|.|||.++..+.+.++.. .+++. ..-.. . ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~--~---~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM--R---TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS--------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee--c---cc
Confidence 566788999999999987776666554443 568999999999999999977533 22221 11110 0 11
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc--cHHHHHHHHhhCCCCccEEEEEeecChhH
Q 022724 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHEI 220 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~--~~~~~~~i~~~l~~~~q~v~~SAt~~~~~ 220 (293)
..+.-|-|.|-..+.+.+.+ .....++++||+||+|..-... ....+... ... ....+|+||||+|...
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCCC
Confidence 23446888898888887766 4457899999999999863221 12222222 222 2468999999998754
No 119
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=1.2e-10 Score=107.97 Aligned_cols=130 Identities=15% Similarity=0.240 Sum_probs=103.3
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|. .|++.|--..-.+.+|+ +....||.|||+++.+|++..... |..+-+++|+..||.+=++.+..+...+|+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 454 49999999888888775 679999999999999998877655 557899999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH-HHHhcC------CCCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~l~~~------~~~~~~l~~iViDE~h~~~ 188 (293)
++....++.+..+....+ .+||.-+|...+- ++|+.+ ....+.+.+.||||+|.++
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999988887655444333 4799999987653 344332 2234668999999999975
No 120
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.31 E-value=4.4e-11 Score=102.31 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCcHHHHHHHH----hhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCC---ceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 55 KPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 55 ~~~~~Q~~~~~----~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~---~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.|+|.|.+.+. .+..|+++++.+|||+|||++|+.|++..+...+. +.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 37999999554 45578999999999999999999999876654332 248999999999988887777665
No 121
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.31 E-value=4.4e-11 Score=102.31 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=56.5
Q ss_pred CCcHHHHHHHH----hhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCC---ceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 55 KPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 55 ~~~~~Q~~~~~----~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~---~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.|+|.|.+.+. .+..|+++++.+|||+|||++|+.|++..+...+. +.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 37999999554 45578999999999999999999999876654332 248999999999988887777665
No 122
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.30 E-value=6.6e-11 Score=102.06 Aligned_cols=143 Identities=19% Similarity=0.141 Sum_probs=84.1
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (293)
.+..+++-.+|+|||...+..+.......+. ...+||+||. .+..++...+.++.....+++..+.++.........
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSS
T ss_pred CCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccccc
Confidence 4679999999999997766544322222211 1259999999 888999999999886556677666666522222222
Q ss_pred HhcCCcEEEeChHHHHHHHhc---CCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeec
Q 022724 148 LEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~l~~---~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
.....+++|+|.+.+...-.. ..+...+.++||+||+|.+- +........+..+. ....+++|||+
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k--~~~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK--NKDSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT--TTTSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred ccccceeeeccccccccccccccccccccccceeEEEecccccc--cccccccccccccc-cceEEeecccc
Confidence 334568999999988810000 01111348999999999983 22333333444455 66788899996
No 123
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.23 E-value=2.1e-10 Score=112.73 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=53.7
Q ss_pred CCCCCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 022724 52 GFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 119 (293)
|| .+++-|.+....+. +++++++.||||+|||++|++|++...... +.++||-++|+.|-+|+..
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~--~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK--EEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc--CCeEEEEcCCHHHHHHHHH
Confidence 44 49999999666544 678999999999999999999998655433 4589999999999999865
No 124
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.22 E-value=2.2e-09 Score=94.13 Aligned_cols=237 Identities=14% Similarity=0.166 Sum_probs=140.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCC-cHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKP-SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~-~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
+..|+..+.++.-.+-+++.. .-| +..+.+....+.+++-++++|.||||||.-.--..+....... ..+..--|.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~-~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQpr 100 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRR-ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPR 100 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHh-cCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCch
Confidence 778999999999999888753 334 3333444455567788999999999999554333333333332 346666798
Q ss_pred HHHHHHHHHHHH-HhhccCCceEEEEECCcchHHHHHHHhcCC-----cEEEeChHHHHHHHhcCCCCCCCccEEEecch
Q 022724 111 RELATQTEKVIL-AIGDFINIQAHACVGGKSVGEDIRKLEHGV-----HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (293)
Q Consensus 111 ~~l~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~ 184 (293)
+--+.++..+.. .+.-.+|-.|.....- ++| -+-.+|.+.|++-.-+. -.+.+.+.||+|||
T Consensus 101 rvaamsva~RVadEMDv~lG~EVGysIrf-----------EdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDea 168 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEMDVTLGEEVGYSIRF-----------EDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEA 168 (699)
T ss_pred HHHHHHHHHHHHHHhccccchhccccccc-----------cccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechh
Confidence 888888776553 3332333222111100 111 01113444444422222 23688999999999
Q ss_pred hhh--hccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHH
Q 022724 185 DEM--LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262 (293)
Q Consensus 185 h~~--~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 262 (293)
|.= ..+-....+..+.... +..++|.||||+-. .....|+.++-.+.++. .+.+..+|..-...+ ..+.
T Consensus 169 hERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erD-ylEa 239 (699)
T KOG0925|consen 169 HERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG----THPVEIFYTPEPERD-YLEA 239 (699)
T ss_pred hhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCC----CCceEEEecCCCChh-HHHH
Confidence 962 2222333445555554 58999999999853 35556777777776654 123444444333333 4444
Q ss_pred -HHHHH---hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 263 -LCDLY---DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 263 -l~~l~---~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
++..+ .....+-+++|....++.+..++.+
T Consensus 240 airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i 273 (699)
T KOG0925|consen 240 AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKI 273 (699)
T ss_pred HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHH
Confidence 33333 3345679999999999888877643
No 125
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.20 E-value=6.9e-10 Score=108.23 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=102.0
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhhc-cCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVD-TSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l~-~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.++++|.+.+..+. .|.+.|+.-.+|.|||+..+..+ ..+. .......+|||||. .+..++.+.+.++.. .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--C
Confidence 68999999998764 57789999999999997654333 3332 22223468999995 667889999988864 3
Q ss_pred ceEEEEECCcchHHHHHH---HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCC
Q 022724 130 IQAHACVGGKSVGEDIRK---LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~---~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~ 206 (293)
+++..++|+......... .....+|+|+|.+.+..... .+.--..++||+||+|.+-.. ...+...+..+. .
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~-a 319 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFS-T 319 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHhh-c
Confidence 566667766443222211 12457899999988865321 222345789999999998432 333444555554 3
Q ss_pred ccEEEEEeec
Q 022724 207 LQVVLISATL 216 (293)
Q Consensus 207 ~q~v~~SAt~ 216 (293)
...+++|+|+
T Consensus 320 ~~RLLLTGTP 329 (1033)
T PLN03142 320 NYRLLITGTP 329 (1033)
T ss_pred CcEEEEecCC
Confidence 4567899997
No 126
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.7e-10 Score=104.96 Aligned_cols=217 Identities=18% Similarity=0.189 Sum_probs=124.9
Q ss_pred HHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC---CCceeEEEEcCCHHHHHHHHHHHH-HhhccCCceEEE--
Q 022724 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQTEKVIL-AIGDFINIQAHA-- 134 (293)
Q Consensus 61 ~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~---~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~-- 134 (293)
+++..+|..+.-++|||.||||||.-.--.+.+.=... ..+.-+=|--|.|--|..+..+.. .++. ++-.|..
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqI 340 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQI 340 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEE
Confidence 35566677777899999999999954322222221111 112234455599888877776654 3444 4333332
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc-----ccHHHHHHHHhhCCC----
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-----GFKDQIYDVYRYLPP---- 205 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~-----~~~~~~~~i~~~l~~---- 205 (293)
-+.++ +.....|.+.|.+-|++-+.+ .+.+...+.||+||||.=.-+ |....+..+.+.+.+
T Consensus 341 Rfd~t--------i~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 341 RFDGT--------IGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred Eeccc--------cCCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 23222 223458999999999987665 356899999999999963110 222333333333333
Q ss_pred --CccEEEEEeecChhHHHHHHhcCCC-CEEEEecCCcccCCCceEEEEEecCccc--HHHHHHHH---HhhCCCCcEEE
Q 022724 206 --DLQVVLISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQFFVAVEREEW--KFDTLCDL---YDTLTITQAVI 277 (293)
Q Consensus 206 --~~q~v~~SAt~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~--k~~~l~~l---~~~~~~~~~iI 277 (293)
..++|+||||+--+-..-.+.+++. |-.+.++..... -..++-....+ --.+.... =++.+.+-+||
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP-----VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILV 486 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP-----VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILV 486 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc-----eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEE
Confidence 6789999999853322222333432 334445433221 11222222211 11222222 23557789999
Q ss_pred EcccchhHHHHHhhC
Q 022724 278 FCNTKRKVLLLVLQF 292 (293)
Q Consensus 278 F~~s~~~a~~l~~~L 292 (293)
|+....++.++++.|
T Consensus 487 FvTGQqEV~qL~~kL 501 (1172)
T KOG0926|consen 487 FVTGQQEVDQLCEKL 501 (1172)
T ss_pred EEeChHHHHHHHHHH
Confidence 999999999998865
No 127
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.18 E-value=2.7e-12 Score=120.82 Aligned_cols=228 Identities=14% Similarity=0.190 Sum_probs=149.1
Q ss_pred CCCCcHHHHHHHHhhhc-CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q 022724 53 FEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (293)
Q Consensus 53 ~~~~~~~Q~~~~~~i~~-~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (293)
+..+.|.|.+.+..+.. ..+.++-+|||+|||.+|.++++..+...+. .++++++|.++|+..-.+.+++.....|++
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcccCCce
Confidence 33566777777766553 5789999999999999999999988877765 689999999999999999888765555899
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc--CCCCCCCccEEEecchhhhhccccHHHHHHHHhh-------
Q 022724 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY------- 202 (293)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~--~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~------- 202 (293)
+..+.|+...+ .... ...+++|+||++.-...++ ..-.+.++..+|+||.|++.+. ++..++.+.+.
T Consensus 1004 ~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~ 1079 (1230)
T KOG0952|consen 1004 VIELTGDVTPD--VKAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQ 1079 (1230)
T ss_pred eEeccCccCCC--hhhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccc
Confidence 99999887655 2222 2468999999999888774 5556789999999999987543 34433333222
Q ss_pred CCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCC------cccCCCceEEEEEecCcccHHHHHHHHHhhCC-CCcE
Q 022724 203 LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD------ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT-ITQA 275 (293)
Q Consensus 203 l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~-~~~~ 275 (293)
..+..|.+++|.-+.+. .++..++...+. ...... +....+..- ..+|+....+.....+.++.++ ..++
T Consensus 1080 t~~~vr~~glsta~~na-~dla~wl~~~~~-~nf~~svrpvp~~~~i~gfp~-~~~cprm~smnkpa~qaik~~sp~~p~ 1156 (1230)
T KOG0952|consen 1080 TEEPVRYLGLSTALANA-NDLADWLNIKDM-YNFRPSVRPVPLEVHIDGFPG-QHYCPRMMSMNKPAFQAIKTHSPIKPV 1156 (1230)
T ss_pred cCcchhhhhHhhhhhcc-HHHHHHhCCCCc-CCCCcccccCCceEeecCCCc-hhcchhhhhcccHHHHHHhcCCCCCce
Confidence 23456777776555332 344444322222 111100 000011111 1233433334444455566554 4599
Q ss_pred EEEcccchhHHHH
Q 022724 276 VIFCNTKRKVLLL 288 (293)
Q Consensus 276 iIF~~s~~~a~~l 288 (293)
+||+.+++....-
T Consensus 1157 lifv~srrqtrlt 1169 (1230)
T KOG0952|consen 1157 LIFVSSRRQTRLT 1169 (1230)
T ss_pred EEEeecccccccc
Confidence 9999998865443
No 128
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.12 E-value=1.5e-09 Score=102.10 Aligned_cols=138 Identities=14% Similarity=0.142 Sum_probs=96.2
Q ss_pred EEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----h
Q 022724 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----E 149 (293)
Q Consensus 74 li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 149 (293)
+..+.+|||||..|+-.+-..+.. |.++|+|+|.+.|+.|+...++..+. +..+..++++.+..+..+.+ .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 334446999999998877666665 56899999999999999999987553 24688888887766655444 3
Q ss_pred cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh--cc-c---cHHHHHHHHhhCCCCccEEEEEeecChhHHHH
Q 022724 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML--SR-G---FKDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (293)
Q Consensus 150 ~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~--~~-~---~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~ 223 (293)
....|+|||-..+. ..+.++++|||||-|.-. +. . ...++...... ..+..+|+.|||.+-+....
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCHHHHHH
Confidence 44789999963332 357899999999998642 11 1 11223333333 35889999999987554443
Q ss_pred H
Q 022724 224 T 224 (293)
Q Consensus 224 ~ 224 (293)
.
T Consensus 311 ~ 311 (665)
T PRK14873 311 V 311 (665)
T ss_pred H
Confidence 3
No 129
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.09 E-value=1.8e-09 Score=103.63 Aligned_cols=168 Identities=20% Similarity=0.159 Sum_probs=102.5
Q ss_pred CCcHHHHHHHHhhhc--------CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 55 KPSAIQQRAVMPIIK--------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~--------~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
....||-.|++.+.. |--++-.|.||+|||++=+- |+..+.....|.|..|..-.|.|..|+-+.+++-..
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCCCCCceEEEEccccceeccchHHHHHhcC
Confidence 457899999998763 11245559999999987543 445556666778999999999999998877765322
Q ss_pred cCCceEEEEECCcchH-------------------------------------------HHHHHHhc--------CCcEE
Q 022724 127 FINIQAHACVGGKSVG-------------------------------------------EDIRKLEH--------GVHVV 155 (293)
Q Consensus 127 ~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~--------~~~il 155 (293)
-.+-...++.|+.... .....+.+ ...++
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 2222222233321110 00011110 14699
Q ss_pred EeChHHHHHHHhc---CCCCCCC----ccEEEecchhhhhccccHHHHHHHHhhCC-CCccEEEEEeecChhHHHHH
Q 022724 156 SGTPGRVCDMIKR---KTLRTRA----IKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMT 224 (293)
Q Consensus 156 V~Tp~~l~~~l~~---~~~~~~~----l~~iViDE~h~~~~~~~~~~~~~i~~~l~-~~~q~v~~SAt~~~~~~~~~ 224 (293)
|||++.++..... +...+.. =+.|||||+|.+-.. ....+..++..+. ...++++||||+|+.+...+
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHH
Confidence 9999999886522 1111111 256999999987332 2333444444322 36889999999999876633
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.08 E-value=1.9e-10 Score=101.07 Aligned_cols=147 Identities=22% Similarity=0.219 Sum_probs=105.5
Q ss_pred CCcHHHHHHHHhhhc-C--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q 022724 55 KPSAIQQRAVMPIIK-G--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~-~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (293)
.++|+|...+..... | ++-+|+.|.|+|||++..-+++.. ..++|+||.+--.+.|+..+++.|...-.-.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 589999999999874 4 589999999999998765444322 3479999999999999999999887655555
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC--------CCCCCCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--------TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~--------~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
++...++... ....++.|+|+|...+.+--++. .+.-+..+++++||+|.+...-|+..+..+...+
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc 450 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC 450 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh
Confidence 6655554432 12356789999986654322111 1123567899999999986665666666555554
Q ss_pred CCCccEEEEEeecC
Q 022724 204 PPDLQVVLISATLP 217 (293)
Q Consensus 204 ~~~~q~v~~SAt~~ 217 (293)
.++++||+-
T Consensus 451 -----KLGLTATLv 459 (776)
T KOG1123|consen 451 -----KLGLTATLV 459 (776)
T ss_pred -----hccceeEEe
Confidence 578999973
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.06 E-value=4.6e-09 Score=99.39 Aligned_cols=130 Identities=19% Similarity=0.235 Sum_probs=98.4
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|.. |++.|--..-.+ .+.-+..+.||.|||+++.+|+.-.... |..+-|++++..||.+-.+.+..+...+|+
T Consensus 73 lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 4554 888777654333 4568899999999999999998644333 456899999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH-HHHhcCC------CCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRKT------LRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~l~~~~------~~~~~l~~iViDE~h~~~ 188 (293)
.+....++.+..+..... .++|+-+|...+- ++|+.+. ...+.+.+.||||+|.++
T Consensus 147 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999888777765544444 3689999986553 3444431 124678999999999975
No 132
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=8.7e-10 Score=104.68 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=99.6
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|. .|+++|--.--.+ .+.-+....||.|||+++.+|++-.... |..+-+++|+..||.+=++.+..+...+|+
T Consensus 79 lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred hCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 353 4777776544344 3456889999999999999998866555 457899999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~~------~~~~~l~~iViDE~h~~~ 188 (293)
++.++.++.+..+....+. ++|++||...+ .++|+.+. ...+.+.+.||||+|.++
T Consensus 153 ~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999888776555444443 79999998776 33444321 123789999999999975
No 133
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.04 E-value=1.2e-08 Score=85.47 Aligned_cols=130 Identities=20% Similarity=0.319 Sum_probs=97.5
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|+ .|++.|..+.-.+.+|+ +....||-|||++..+|+.-.... |..+=|++.+..|+..=.+.+..+...+|+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---GKGVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 454 49999999888887766 999999999999988877655544 457889999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHH-HHhcCC------CCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKT------LRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~-~l~~~~------~~~~~l~~iViDE~h~~~ 188 (293)
++....++.+..+...... ++|+-+|...+.- +|+.+. ...+.+.++||||+|.++
T Consensus 148 sv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999887654433333 5799999988864 554421 124788999999999975
No 134
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=1.9e-08 Score=91.38 Aligned_cols=220 Identities=13% Similarity=0.185 Sum_probs=130.7
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-HhhccCCceEEE
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHA 134 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~ 134 (293)
.+++-.+.+.++...+-++|.|.||||||.-.--.+.+.=.. +.+.++-+--|.|--|..+..+.. .++..+|-.|..
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGY 344 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGY 344 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-cCCceEeecCcchHHHHHHHHHHHHHhCcccccccce
Confidence 355666777888888999999999999996532222222122 234456677799988888876654 455444433322
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHH---HhhCCCCccEEE
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV---YRYLPPDLQVVL 211 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i---~~~l~~~~q~v~ 211 (293)
...-.+. -.+..-|=..|.+.|++-+.. ..++.+.++|||||||.=.- .-+.+..+ +.+.++..++++
T Consensus 345 sIRFEdc------TSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL--~TDILfgLvKDIar~RpdLKllI 415 (902)
T KOG0923|consen 345 SIRFEDC------TSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTL--HTDILFGLVKDIARFRPDLKLLI 415 (902)
T ss_pred EEEeccc------cCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhh--hhhHHHHHHHHHHhhCCcceEEe
Confidence 1111000 012235667899998884433 45688999999999996210 11112222 233457899999
Q ss_pred EEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHh---hCCCCcEEEEcccchhHHHH
Q 022724 212 ISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD---TLTITQAVIFCNTKRKVLLL 288 (293)
Q Consensus 212 ~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~---~~~~~~~iIF~~s~~~a~~l 288 (293)
+|||+..+ .+. .++.+...+.++. ....+.-+|...+..+.-.+.+...++ ..+.+-+|||..-.++.+.+
T Consensus 416 sSAT~DAe--kFS-~fFDdapIF~iPG---RRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 416 SSATMDAE--KFS-AFFDDAPIFRIPG---RRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred eccccCHH--HHH-HhccCCcEEeccC---cccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHH
Confidence 99998643 333 3444433333332 223566677766666633444444443 23557899999888877665
Q ss_pred Hhh
Q 022724 289 VLQ 291 (293)
Q Consensus 289 ~~~ 291 (293)
.+.
T Consensus 490 ~e~ 492 (902)
T KOG0923|consen 490 KEN 492 (902)
T ss_pred HHH
Confidence 544
No 135
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.98 E-value=7.5e-09 Score=98.82 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=52.0
Q ss_pred CCCCCcHHHHHHHHhhh----c-----CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 52 GFEKPSAIQQRAVMPII----K-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~----~-----~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
||. +++-|.+....+. . ++.++|.||||+|||++|++|++...... +.++||-++|+.|-+|+.
T Consensus 23 ~~e-~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~--~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFI-PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE--KKKLVISTATVALQEQLV 95 (697)
T ss_pred CCC-cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHH
Confidence 554 9999999776654 3 36789999999999999999998765443 457999999999999985
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.98 E-value=4.1e-08 Score=89.53 Aligned_cols=218 Identities=15% Similarity=0.140 Sum_probs=127.2
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-HhhccCCceEEE
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHA 134 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~ 134 (293)
....+.+.+..+..++-++|+|.||||||.-..-.+++.=... .| -+-+--|.+.-|..+..+.. .++..+|-.|..
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~-~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD-NG-MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc-CC-eeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 4566777777787888999999999999965433333322221 12 34444599999999887775 454444443332
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHH-HHhcCCCCCCCccEEEecchhhhhcc-c-cHHHHHHHHhhCCCCccEEE
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRTRAIKLLVLDESDEMLSR-G-FKDQIYDVYRYLPPDLQVVL 211 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~-~l~~~~~~~~~l~~iViDE~h~~~~~-~-~~~~~~~i~~~l~~~~q~v~ 211 (293)
...-.+.. .....|=..|.+.|++ .|.. -++.+.+.||+||||.=.-+ . ....+..+++.. .+.++|.
T Consensus 435 sIRFEdvT------~~~T~IkymTDGiLLrEsL~d--~~L~kYSviImDEAHERslNtDilfGllk~~larR-rdlKliV 505 (1042)
T KOG0924|consen 435 SIRFEDVT------SEDTKIKYMTDGILLRESLKD--RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR-RDLKLIV 505 (1042)
T ss_pred EEEeeecC------CCceeEEEeccchHHHHHhhh--hhhhheeEEEechhhhcccchHHHHHHHHHHHHhh-ccceEEE
Confidence 22111110 0123577788888877 3332 34678999999999973211 1 112233333333 4789999
Q ss_pred EEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhC---CCCcEEEEcccchhHHHH
Q 022724 212 ISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL---TITQAVIFCNTKRKVLLL 288 (293)
Q Consensus 212 ~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~---~~~~~iIF~~s~~~a~~l 288 (293)
+|||+.. ..+...+...|...+..+. ..+.-++...+.++.-...+.+.+.-+ ..+-.+||....++.+-.
T Consensus 506 tSATm~a--~kf~nfFgn~p~f~IpGRT----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 506 TSATMDA--QKFSNFFGNCPQFTIPGRT----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred eeccccH--HHHHHHhCCCceeeecCCc----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 9999864 3344333334544443321 234555555555553344455554422 346899999888776655
Q ss_pred Hh
Q 022724 289 VL 290 (293)
Q Consensus 289 ~~ 290 (293)
+.
T Consensus 580 ~~ 581 (1042)
T KOG0924|consen 580 CD 581 (1042)
T ss_pred HH
Confidence 54
No 137
>COG4889 Predicted helicase [General function prediction only]
Probab=98.94 E-value=7.3e-10 Score=103.12 Aligned_cols=149 Identities=20% Similarity=0.228 Sum_probs=96.8
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCC----cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGR----DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~----~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
-.|+.+. +.++..++.-..-.+|+|+|+.|+++...|- .-=+.+..|+|||+..+- +.+.+.. .++++|+
T Consensus 140 IDW~~f~-p~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~Lv 213 (1518)
T COG4889 140 IDWDIFD-PTELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLV 213 (1518)
T ss_pred CChhhcC-ccccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeec
Confidence 3455542 2466666665566789999999999987541 122334569999987653 3344433 5899999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHH-----------------------HHHHH--hcCCcEEEeChHHHH
Q 022724 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGE-----------------------DIRKL--EHGVHVVSGTPGRVC 163 (293)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~--~~~~~ilV~Tp~~l~ 163 (293)
|+++|..|..+.+..= +...++...+.++....+ .+... .++--|+++|.+.+.
T Consensus 214 PSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 9999999999877542 223333333333221111 11111 123458999999988
Q ss_pred HHHhcCCCCCCCccEEEecchhhhh
Q 022724 164 DMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 164 ~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
..-.....-+..+++||.||||+-.
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccc
Confidence 7766656668889999999999964
No 138
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.94 E-value=7.8e-08 Score=90.35 Aligned_cols=148 Identities=12% Similarity=0.127 Sum_probs=97.3
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
.-.+|.+|.|+|||.+..-++-+.+.. .+.+++++..+++|+.++..+++...- .++..+.-.++.... ..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~------~~ 120 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYIID------GR 120 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccccc------cc
Confidence 457888999999997765544444432 245899999999999999998875421 122222111111111 01
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc-------HHHHHHHHhhCCCCccEEEEEeecChhHHHH
Q 022724 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF-------KDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (293)
Q Consensus 151 ~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~-------~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~ 223 (293)
..+-+++..+.|.+.. ...+.+.++|||||+-..+..-+ ...+..+...+.....+|++-|++++...++
T Consensus 121 ~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred ccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 2356667777776643 22466789999999988764422 2223334445566789999999999999999
Q ss_pred HHhcCCC
Q 022724 224 TTKFMTD 230 (293)
Q Consensus 224 ~~~~~~~ 230 (293)
+..+.++
T Consensus 198 l~~~Rp~ 204 (824)
T PF02399_consen 198 LASCRPD 204 (824)
T ss_pred HHHhCCC
Confidence 9887654
No 139
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=9e-08 Score=90.58 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=97.9
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|. .|++.|--.--.+..|+ +....||-|||+++.+|+.-.... |..+-|++.+..||..=.+.+..+...+|+
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~---GkgVhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT---GKGVIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc---CCceEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 354 58888887666666664 789999999999999888654333 345778889999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH-HHHhcCC------CCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRKT------LRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~l~~~~------~~~~~l~~iViDE~h~~~ 188 (293)
++.....+.+..+..... .+||.-+|...|- .+|+.+. ...+.+.+.||||+|.++
T Consensus 149 svG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 149 SVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred ceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 999887776655443433 4799999987663 3555432 224778999999999975
No 140
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.82 E-value=3.1e-08 Score=94.75 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=59.2
Q ss_pred HHCCCCCCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 49 YQYGFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
..+....|++.|.+.+..+. +++.+++.||||+|||++|+.|++......+ .+++|.++|+.+-+|+.+....
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~--~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG--KKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC--CcEEEECCCHHHHHHHHHhhcc
Confidence 34455679999999886654 4567999999999999999999998876653 5799999999999998765543
No 141
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.81 E-value=3.7e-08 Score=79.23 Aligned_cols=141 Identities=15% Similarity=0.223 Sum_probs=75.8
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH-------HHHHHh--
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-------KVILAI-- 124 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~-------~~~~~~-- 124 (293)
.-.++.|..++.++.+.+-+++.||.|+|||+.++..+++.+... ...+++|.-|..+..+++- +.+..+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS---------TTTH
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 345889999999999888999999999999999998888888773 3447888888776422221 111100
Q ss_pred --hccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhh
Q 022724 125 --GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (293)
Q Consensus 125 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~ 202 (293)
.+.+..- .+. ...+.+.....|-+..+ .+++...++ -++||+|||+.+ -...+..++.+
T Consensus 82 p~~d~l~~~----~~~----~~~~~~~~~~~Ie~~~~----~~iRGrt~~---~~~iIvDEaQN~----t~~~~k~ilTR 142 (205)
T PF02562_consen 82 PIYDALEEL----FGK----EKLEELIQNGKIEIEPL----AFIRGRTFD---NAFIIVDEAQNL----TPEELKMILTR 142 (205)
T ss_dssp HHHHHHTTT----S-T----TCHHHHHHTTSEEEEEG----GGGTT--B----SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHH----hCh----HhHHHHhhcCeEEEEeh----hhhcCcccc---ceEEEEecccCC----CHHHHHHHHcc
Confidence 0000000 011 11122222334544444 333433332 289999999876 35678899999
Q ss_pred CCCCccEEEEEe
Q 022724 203 LPPDLQVVLISA 214 (293)
Q Consensus 203 l~~~~q~v~~SA 214 (293)
+..++++|++--
T Consensus 143 ~g~~skii~~GD 154 (205)
T PF02562_consen 143 IGEGSKIIITGD 154 (205)
T ss_dssp B-TT-EEEEEE-
T ss_pred cCCCcEEEEecC
Confidence 998899887743
No 142
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.79 E-value=1.3e-07 Score=87.29 Aligned_cols=152 Identities=17% Similarity=0.191 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHH--HHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccC
Q 022724 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMI--ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~--~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (293)
.++++|.+-++-+. .|-|.|+.-..|-|||+-. ++.-+...... .| .-+|+||...| ..+.+.++++.+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~-~G-PfLVi~P~StL-~NW~~Ef~rf~P-- 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGI-PG-PFLVIAPKSTL-DNWMNEFKRFTP-- 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCC-CC-CeEEEeeHhhH-HHHHHHHHHhCC--
Confidence 58899999887654 5779999999999999542 22223332222 23 47999997776 456666777765
Q ss_pred CceEEEEECCcchHHHHHH-H--hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCC
Q 022724 129 NIQAHACVGGKSVGEDIRK-L--EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (293)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~-~--~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~ 205 (293)
++++..++|+......... + ..+.+|+|+|.+....- ...+.--...++||||+|++-. ....+..+++.+..
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN--~~s~L~~~lr~f~~ 317 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKN--EKSKLSKILREFKT 317 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcc--hhhHHHHHHHHhcc
Confidence 5688888888754443322 2 24679999999887753 1222334568999999999843 34455566777764
Q ss_pred CccEEEEEeec
Q 022724 206 DLQVVLISATL 216 (293)
Q Consensus 206 ~~q~v~~SAt~ 216 (293)
..+ +++|.|+
T Consensus 318 ~nr-LLlTGTP 327 (971)
T KOG0385|consen 318 DNR-LLLTGTP 327 (971)
T ss_pred cce-eEeeCCc
Confidence 444 4556664
No 143
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.73 E-value=6.5e-08 Score=80.14 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=50.2
Q ss_pred CcHHHHHHHHhhhcCCc-EEEEcCCCChhHHHHHHHHHhhh------ccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 56 PSAIQQRAVMPIIKGRD-VIAQAQSGTGKTSMIALTVCQTV------DTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~-~li~~~Tg~GKT~~~~~~~~~~l------~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
+++.|.+|+..+++... .+|.||.|+|||.... .++..+ .....+.++++++|+..-++.+.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999999888 9999999999995433 333333 1234466899999999999999998877
No 144
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.73 E-value=1.5e-07 Score=92.58 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=93.1
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
+..+|.--+|||||+.....+-..+.. ..-+.++||+-+++|-.|+.+.+..+........ ...+..+..+.+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 468999999999998866555333333 5567999999999999999999998875443211 33444444444543
Q ss_pred C-CcEEEeChHHHHHHHhcC-CCCC-CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeec
Q 022724 151 G-VHVVSGTPGRVCDMIKRK-TLRT-RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 151 ~-~~ilV~Tp~~l~~~l~~~-~~~~-~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
+ -.|+|||.++|...+... .... .+==.||+||||+- .++..-..+...+ ++...++||+|+
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~-~~a~~~gFTGTP 413 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKAL-KKAIFIGFTGTP 413 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHh-ccceEEEeeCCc
Confidence 3 389999999999877654 1112 22235899999984 2333333334444 358899999997
No 145
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.72 E-value=3e-07 Score=88.71 Aligned_cols=143 Identities=17% Similarity=0.263 Sum_probs=86.2
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-----H-hhc---cCCceEEEEECCc--
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-----A-IGD---FINIQAHACVGGK-- 139 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~-----~-~~~---~~~~~~~~~~~~~-- 139 (293)
.++.+.++||+|||.+|+-.+++.....+ ..+.||+||+.++-+.+...+. . +.. ...+....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 48999999999999999888766554433 3589999999999888876664 1 111 1123444444332
Q ss_pred -----chHHHHHHHh-------cCCcEEEeChHHHHHHHh-cCC----------CCCCC----ccEEEecchhhhhcccc
Q 022724 140 -----SVGEDIRKLE-------HGVHVVSGTPGRVCDMIK-RKT----------LRTRA----IKLLVLDESDEMLSRGF 192 (293)
Q Consensus 140 -----~~~~~~~~~~-------~~~~ilV~Tp~~l~~~l~-~~~----------~~~~~----l~~iViDE~h~~~~~~~ 192 (293)
+....++..- +..+|+|.|.+.+..-.. +.. ..+.. =-.+|+||.|++...
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 1122222221 146899999988865211 110 01111 135999999998432
Q ss_pred HHHHHHHHhhCCCCccEEEEEeecCh
Q 022724 193 KDQIYDVYRYLPPDLQVVLISATLPH 218 (293)
Q Consensus 193 ~~~~~~i~~~l~~~~q~v~~SAt~~~ 218 (293)
......+ ..+++-+ ++.+|||++.
T Consensus 217 ~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 2223333 4454333 5669999986
No 146
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.65 E-value=2.9e-07 Score=74.35 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q 022724 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (293)
++++-|.+++..++.+ +-.++.||.|+|||.. +-.+...+... +.++++++||...+..+.+.. +...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~-------~~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--GKRVIGLAPTNKAAKELREKT-------GIEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--T--EEEEESSHHHHHHHHHHH-------TS-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh-------Ccch
Confidence 3688999999998643 3577889999999964 33344445443 468999999999888877742 1111
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC----CCCCCCccEEEecchhhhhccccHHHHHHHHhhCCC-Cc
Q 022724 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DL 207 (293)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~----~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~-~~ 207 (293)
.|-.+++...... ...+...++|||||+-++. ...+..++..... ..
T Consensus 71 ------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 71 ------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGA 122 (196)
T ss_dssp ------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-
T ss_pred ------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCC
Confidence 2222222211111 1114566899999999874 3456666666665 56
Q ss_pred cEEEEEee
Q 022724 208 QVVLISAT 215 (293)
Q Consensus 208 q~v~~SAt 215 (293)
++|++-=+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 77766443
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.63 E-value=2e-07 Score=88.54 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=97.5
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|. .|++.|--.--.+ .+.-+..+.||-|||+++.+|+.-.... |..+-|++++..||..=.+.+..+...+|+
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~---GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT---GKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc---CCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 354 3777776644444 4556889999999999999988765444 446899999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhc------CCCCCCCccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKR------KTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~------~~~~~~~l~~iViDE~h~~~ 188 (293)
.+....++.+..+.... -.+||+.+|+..+ .++|+. .....+.+.+.||||+|.++
T Consensus 156 tvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99988776655443333 3579999999877 223332 22345778999999999975
No 148
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.62 E-value=2.7e-07 Score=85.51 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=102.4
Q ss_pred CcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q 022724 56 PSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (293)
Q Consensus 56 ~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (293)
+-++|.--++.+. ++-+.|+.-..|-|||. -.++.+..+...+....-+|+||...| +.+.+.+.+|+. .++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTi-QvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCP--sl~ 475 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTI-QVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCP--SLK 475 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchh-HHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCC--ceE
Confidence 7889998877643 45688999999999993 233333434333323357999998775 456666777765 468
Q ss_pred EEEEECCcchHHHHHHHh----cCCcEEEeChHHHHHHHh-cCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCC
Q 022724 132 AHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIK-RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (293)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~l~-~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~ 206 (293)
+..++|.......++... .+.+|+|+|...+..--. +..+.-.++.++|+||.|++-+.. ...+..+.+- +.
T Consensus 476 Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I--~A 552 (941)
T KOG0389|consen 476 VEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSI--NA 552 (941)
T ss_pred EEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhccc--cc
Confidence 888899887777666542 367999999865542111 112234677899999999885442 2223322222 24
Q ss_pred ccEEEEEeec-ChhHHHHH
Q 022724 207 LQVVLISATL-PHEILEMT 224 (293)
Q Consensus 207 ~q~v~~SAt~-~~~~~~~~ 224 (293)
.+.+++|.|+ -+.+.+++
T Consensus 553 n~RlLLTGTPLQNNL~ELi 571 (941)
T KOG0389|consen 553 NFRLLLTGTPLQNNLKELI 571 (941)
T ss_pred cceEEeeCCcccccHHHHH
Confidence 4566777775 55555543
No 149
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.62 E-value=4.5e-07 Score=81.42 Aligned_cols=240 Identities=11% Similarity=0.020 Sum_probs=152.4
Q ss_pred HHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 48 IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
++.+.-+....+|.+++..+.+|++.++...|.+||.++|.++....+...+. ...++..|++++++...+-+.-....
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~V~~~~ 357 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-TNSLLPSEMVEHLRNGSKGQVVHVEV 357 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-cceecchhHHHHhhccCCceEEEEEe
Confidence 34455567899999999999999999999999999999999988877766544 36789999999988765533211111
Q ss_pred C---CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC----CCCCccEEEecchhhhhcc--c-cHHHHH
Q 022724 128 I---NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL----RTRAIKLLVLDESDEMLSR--G-FKDQIY 197 (293)
Q Consensus 128 ~---~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~----~~~~l~~iViDE~h~~~~~--~-~~~~~~ 197 (293)
. .--++..+++.+.......+..+.+++.+.|+......--+.. .+-+..+.++||+|..... . ...+++
T Consensus 358 I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R 437 (1034)
T KOG4150|consen 358 IKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLR 437 (1034)
T ss_pred hhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHH
Confidence 0 1122333444444444444456778999999888774432222 1234567899999986432 1 122333
Q ss_pred HHHhhC-----CCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcc--------cHHHHHH
Q 022724 198 DVYRYL-----PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE--------WKFDTLC 264 (293)
Q Consensus 198 ~i~~~l-----~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~k~~~l~ 264 (293)
++.+.+ +.+.|++-.+||+.+.+.-.......+-..+... +..+.+-.+++.+-+... .+.....
T Consensus 438 ~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~--DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s 515 (1034)
T KOG4150|consen 438 ALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTI--DGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVS 515 (1034)
T ss_pred HHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEe--cCCCCccceEEEeCCCCCCcchhhhhhHHHHHH
Confidence 333332 2478999999999877665554443343433332 344555567777665422 1333334
Q ss_pred HHHhhC--CCCcEEEEcccchhHHHHHh
Q 022724 265 DLYDTL--TITQAVIFCNTKRKVLLLVL 290 (293)
Q Consensus 265 ~l~~~~--~~~~~iIF~~s~~~a~~l~~ 290 (293)
.++.+. .+-++|-||.+++-|+.+..
T Consensus 516 ~~~~~~i~~~~R~IAFC~~R~~CEL~~~ 543 (1034)
T KOG4150|consen 516 HLFAEMVQHGLRCIAFCPSRKLCELVLC 543 (1034)
T ss_pred HHHHHHHHcCCcEEEeccHHHHHHHHHH
Confidence 444332 34599999999999987654
No 150
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.58 E-value=9e-07 Score=82.23 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=100.1
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEcCCCChhH---HHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKT---SMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT---~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
.+.++|++.+.-+. ++..-|+--..|-||| .+|+-++.+.- .-...+||+|| ..+..|+.+.+..+...
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~---k~~~paLIVCP-~Tii~qW~~E~~~w~p~ 280 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG---KLTKPALIVCP-ATIIHQWMKEFQTWWPP 280 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc---cccCceEEEcc-HHHHHHHHHHHHHhCcc
Confidence 57889999887654 5667888889999999 33443333321 12247999999 56678999989888654
Q ss_pred CCceEEEEECCcch--------HHHHHH-----HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHH
Q 022724 128 INIQAHACVGGKSV--------GEDIRK-----LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD 194 (293)
Q Consensus 128 ~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~ 194 (293)
+++..+++..+. ...... ...+..|+++|.+.+--. ...+.-...+++|+||.|.+-.. -.
T Consensus 281 --~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNp--ns 354 (923)
T KOG0387|consen 281 --FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNP--NS 354 (923)
T ss_pred --eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCC--cc
Confidence 567777766542 111111 113457999998655421 12333456799999999998433 34
Q ss_pred HHHHHHhhCCCCccEEEEEeec-ChhHHHH
Q 022724 195 QIYDVYRYLPPDLQVVLISATL-PHEILEM 223 (293)
Q Consensus 195 ~~~~i~~~l~~~~q~v~~SAt~-~~~~~~~ 223 (293)
.+...+..++. .+.|++|.|+ -+.+.++
T Consensus 355 ~islackki~T-~~RiILSGTPiQNnL~EL 383 (923)
T KOG0387|consen 355 KISLACKKIRT-VHRIILSGTPIQNNLTEL 383 (923)
T ss_pred HHHHHHHhccc-cceEEeeCccccchHHHH
Confidence 45556666654 4455566665 4444443
No 151
>PRK10536 hypothetical protein; Provisional
Probab=98.55 E-value=2.7e-06 Score=70.52 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=85.5
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHH-----------HHH
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ-----------TEK 119 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q-----------~~~ 119 (293)
.++.-.+..|...+..+.++..+++.||+|+|||+.....+++.+.... -.++++.=|..+..+. +.-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 3555568899999999998889999999999999887777776664432 3355555576543222 222
Q ss_pred HHHHhhccCCceEEEEECCcchHHHHHHH-h-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHH
Q 022724 120 VILAIGDFINIQAHACVGGKSVGEDIRKL-E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (293)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~ 197 (293)
.+..+.+.+... .+. ...+.+ . ..-.|-|... .+++...++ -++||+||++.+. ..++.
T Consensus 134 ~~~pi~D~L~~~----~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrtl~---~~~vIvDEaqn~~----~~~~k 194 (262)
T PRK10536 134 YFRPVYDVLVRR----LGA----SFMQYCLRPEIGKVEIAPF----AYMRGRTFE---NAVVILDEAQNVT----AAQMK 194 (262)
T ss_pred HHHHHHHHHHHH----hCh----HHHHHHHHhccCcEEEecH----HHhcCCccc---CCEEEEechhcCC----HHHHH
Confidence 222222221110 111 111211 1 1113333333 344544442 2899999999873 46788
Q ss_pred HHHhhCCCCccEEEE
Q 022724 198 DVYRYLPPDLQVVLI 212 (293)
Q Consensus 198 ~i~~~l~~~~q~v~~ 212 (293)
.++.+++.+.++|+.
T Consensus 195 ~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 195 MFLTRLGENVTVIVN 209 (262)
T ss_pred HHHhhcCCCCEEEEe
Confidence 889999988888865
No 152
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.54 E-value=2.6e-06 Score=80.45 Aligned_cols=164 Identities=16% Similarity=0.096 Sum_probs=106.8
Q ss_pred CCcHHHHHHHHhhhc---CC-------cEEEEcCCCChhHHHHHHHHHhhhccCCC----ceeEEEEcCCHHHHHHHHHH
Q 022724 55 KPSAIQQRAVMPIIK---GR-------DVIAQAQSGTGKTSMIALTVCQTVDTSSR----EVQALILSPTRELATQTEKV 120 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~---~~-------~~li~~~Tg~GKT~~~~~~~~~~l~~~~~----~~~~lil~P~~~l~~q~~~~ 120 (293)
..+|+|++.|.-+.+ |. ..++.-..|+|||+-...-+...+...+. -.++||++| ..|+..+.+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 589999999987653 21 34555668999997655444444444332 147999999 6788999999
Q ss_pred HHHhhccCCceEEEEECCcch--HHHHHHHh-----cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccH
Q 022724 121 ILAIGDFINIQAHACVGGKSV--GEDIRKLE-----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (293)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~ 193 (293)
+.+|.....+....+++.... ......+. -...|++-+.+.+.+..+. +....++++|+||.|.. ..-.
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrl--kN~~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRL--KNSD 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCc--cchh
Confidence 999887666777777777653 11111111 1124677788887654443 33567899999999987 3334
Q ss_pred HHHHHHHhhCCCCccEEEEEeec-ChhHHHHH
Q 022724 194 DQIYDVYRYLPPDLQVVLISATL-PHEILEMT 224 (293)
Q Consensus 194 ~~~~~i~~~l~~~~q~v~~SAt~-~~~~~~~~ 224 (293)
..+...+..+. -.+.|++|.|+ -+++.++.
T Consensus 393 s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyF 423 (776)
T KOG0390|consen 393 SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYF 423 (776)
T ss_pred hHHHHHHHhcC-CCceEEeeCCcccccHHHHH
Confidence 55666666665 45566778886 45555543
No 153
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.44 E-value=4.2e-06 Score=78.27 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=85.6
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhHHHHH--HHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA--LTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~--~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
.++|+.++...+.++-.+|.|+.|+|||.... +..+........+.++++.+||-.-+..+.+.+......+...
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 37999999999999999999999999996532 2223222222123579999999988888888765533222110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc------CCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCcc
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~------~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q 208 (293)
.... ....+-..|-.+++..... .......+++|||||+-++. ...+..+++.++...+
T Consensus 224 -------~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 -------EALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTK 288 (586)
T ss_pred -------hhhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCE
Confidence 0000 0011112333333322110 11123457999999998763 3456677788888888
Q ss_pred EEEEEee
Q 022724 209 VVLISAT 215 (293)
Q Consensus 209 ~v~~SAt 215 (293)
+|++-=.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 8877543
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.40 E-value=3.9e-05 Score=68.66 Aligned_cols=192 Identities=17% Similarity=0.190 Sum_probs=114.4
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhcc-C------------Cce------EEEEECCcchHHHHHHHh-----------
Q 022724 100 REVQALILSPTRELATQTEKVILAIGDF-I------------NIQ------AHACVGGKSVGEDIRKLE----------- 149 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~-~------------~~~------~~~~~~~~~~~~~~~~~~----------- 149 (293)
..|++|||+|+|..|-++.+.+.++... . ++. ...-........+.+.+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4589999999999999998888766543 1 100 000000001111122221
Q ss_pred --------------cCCcEEEeChHHHHHHHhc------CCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC---C-
Q 022724 150 --------------HGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP---P- 205 (293)
Q Consensus 150 --------------~~~~ilV~Tp~~l~~~l~~------~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~---~- 205 (293)
..+||||++|=-|-..+.. ....++.++++|+|.+|.++-. ..+++..++..++ +
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCC
Confidence 1368999999888877763 2233689999999999998533 2344455555443 1
Q ss_pred --------------------CccEEEEEeecChhHHHHHHhcCCCCEE-EEe--cCC-----cccCCCceEEEEEecCcc
Q 022724 206 --------------------DLQVVLISATLPHEILEMTTKFMTDPVK-ILV--KRD-----ELTLEGIKQFFVAVEREE 257 (293)
Q Consensus 206 --------------------~~q~v~~SAt~~~~~~~~~~~~~~~~~~-~~~--~~~-----~~~~~~i~~~~~~~~~~~ 257 (293)
-+|.|++|+..++++..+......+... +.+ ... .....++.|.+...+...
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 2699999999999999988875554322 221 111 123456777777655432
Q ss_pred ------cHHHH-----HHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 258 ------WKFDT-----LCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 258 ------~k~~~-----l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...+. +-.+.+....+.+|||++|--+=..+.++|
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~l 320 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYL 320 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHH
Confidence 12222 222222334569999999976655555443
No 155
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.40 E-value=4.1e-06 Score=70.69 Aligned_cols=173 Identities=21% Similarity=0.172 Sum_probs=109.7
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhh----------cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEE
Q 022724 37 AMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII----------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (293)
Q Consensus 37 ~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~----------~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~li 106 (293)
.+.|++.+.+ .| .++..|-+++-... ++..+++-=.||.||.-...-.|++.+.... .++|+
T Consensus 25 ~~~lp~~~~~----~g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~vw 96 (303)
T PF13872_consen 25 RLHLPEEVID----SG--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRAVW 96 (303)
T ss_pred ccCCCHHHHh----cc--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--CceEE
Confidence 3356655443 22 46788887775433 2356788888999999776667777777653 37999
Q ss_pred EcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC---CCC---------CC
Q 022724 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLR---------TR 174 (293)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~---~~~---------~~ 174 (293)
+..+..|-.+..+.++.++.. .+.+..+..-... ....-...|+++|...|...-..+ ... -.
T Consensus 97 vS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~d 171 (303)
T PF13872_consen 97 VSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGED 171 (303)
T ss_pred EECChhhhhHHHHHHHHhCCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcC
Confidence 999999999999999988754 3333332221000 001113469999998887654221 111 12
Q ss_pred CccEEEecchhhhhcccc--------HHHHHHHHhhCCCCccEEEEEeecChhHHHH
Q 022724 175 AIKLLVLDESDEMLSRGF--------KDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~--------~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~ 223 (293)
.=.+||+||+|.+-...- +.....+...+ ++.+++++|||--.+.+++
T Consensus 172 fdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 172 FDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPRNM 227 (303)
T ss_pred CCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCcee
Confidence 236899999999854321 23444555666 4678999999976554444
No 156
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.35 E-value=1.3e-05 Score=65.31 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=85.4
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhc---CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK---GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~---~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
.+|+....|.+++=.+.. ++. .++.|.++...+.+ |+|.+...-+|.|||.+.+ |++..+..++. .-+.+++|
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LAdg~-~LvrviVp 78 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALADGS-RLVRVIVP 78 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHcCCC-cEEEEEcC
Confidence 357777777777766653 444 89999999888774 6899999999999997654 66655555433 24556666
Q ss_pred CHHHHHHHHHHHHH-hhccCCceEEEEECC--cchH----HHHHH----HhcCCcEEEeChHHHHHH
Q 022724 110 TRELATQTEKVILA-IGDFINIQAHACVGG--KSVG----EDIRK----LEHGVHVVSGTPGRVCDM 165 (293)
Q Consensus 110 ~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~--~~~~----~~~~~----~~~~~~ilV~Tp~~l~~~ 165 (293)
++|..|+...++. ++.-.+-++..+.-+ .... ..+.. ....-.|+++||+.+.++
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 7799999988874 555556566554433 2221 11111 122347999999999763
No 157
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.34 E-value=7.8e-06 Score=76.75 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=85.4
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhHHHHH--HHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA--LTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~--~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
.++|+.|+-....++-.+|.|++|+|||.... +..+..... ....++.+.+||..-+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 58999999999999999999999999996532 222222211 123578888999998999888776533322210
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc------CCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCcc
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~------~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q 208 (293)
.... .....-..|-.+++..... +....-..+++||||+-++- ...+..+++.+++..+
T Consensus 230 --------~~~~---~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 --------DEQK---KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHAR 294 (615)
T ss_pred --------hhhh---hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCE
Confidence 0000 0001112233333221111 11122346899999998762 4456677788888888
Q ss_pred EEEEEee
Q 022724 209 VVLISAT 215 (293)
Q Consensus 209 ~v~~SAt 215 (293)
+|++-=.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 8887544
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=2.7e-06 Score=81.92 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCCCCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 52 GFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
-|..++|.|.+....+. .|++.++.+|||+|||++.+.+++......+...+++|.+.|..-..|+.+.++++.
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhhh
Confidence 45666999998776644 688999999999999999999999887655545699999999999999999998853
No 159
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.30 E-value=1.6e-05 Score=76.42 Aligned_cols=126 Identities=22% Similarity=0.235 Sum_probs=78.9
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEE
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (293)
..+++.|++|+..+..++-+++.|+.|+|||... -.++..+........+++++||-.-+..+.+.. +...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~~a- 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GLTA- 392 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CCcc-
Confidence 3589999999999998899999999999999543 234444433321246888899988777554421 2111
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-----CCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCcc
Q 022724 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-----KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (293)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-----~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q 208 (293)
.|-.+++..... ..-.....++|||||++++.. ..+..+++.++...+
T Consensus 393 -----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 393 -----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHAR 445 (720)
T ss_pred -----------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCCE
Confidence 111111111000 001124568999999998742 345666777777788
Q ss_pred EEEEEee
Q 022724 209 VVLISAT 215 (293)
Q Consensus 209 ~v~~SAt 215 (293)
+|++-=.
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8876543
No 160
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.29 E-value=6.1e-06 Score=72.97 Aligned_cols=108 Identities=13% Similarity=0.206 Sum_probs=68.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcC
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (293)
-++|.|..|||||+..+ -++..+.....+.++++++++.+|...+...+..-... ..
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc----------------------ch
Confidence 47889999999996654 33344422334568999999999999888877543200 00
Q ss_pred CcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc-------cHHHHHHHHhh
Q 022724 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-------FKDQIYDVYRY 202 (293)
Q Consensus 152 ~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~-------~~~~~~~i~~~ 202 (293)
....+..+..+..............++|||||||.+.+.+ ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1223344444444333223446788999999999997631 23556666665
No 161
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.27 E-value=6e-06 Score=80.15 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=108.6
Q ss_pred CCcHHHHHHHHhhh--c--CCcEEEEcCCCChhHHHHHHHHHhhhccC-C-----CceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 55 KPSAIQQRAVMPII--K--GRDVIAQAQSGTGKTSMIALTVCQTVDTS-S-----REVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~--~--~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-~-----~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.++.+|++-++.+. + +-+-|+|-..|-|||+-.+-.+....... . ...-++|+|| ..|+-.+...+.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 46889999887643 2 45899999999999976543333222221 0 1223899999 57889999999998
Q ss_pred hccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC
Q 022724 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (293)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~ 204 (293)
... +++..+.|+.......+.-.++.+|+|++.+.+-+-+.. +.-....|.|+||-|-+- + -...+....+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVik-N-~ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIK-N-SKTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceec-c-hHHHHHHHHHHHh
Confidence 876 667777777666655555556679999999877542211 112345799999999873 2 2444555556665
Q ss_pred CCccEEEEEeec-ChhHHH---HHHhcCCC
Q 022724 205 PDLQVVLISATL-PHEILE---MTTKFMTD 230 (293)
Q Consensus 205 ~~~q~v~~SAt~-~~~~~~---~~~~~~~~ 230 (293)
.+.++ .+|.|+ .+.+.+ +...+|+.
T Consensus 1128 a~hRL-ILSGTPIQNnvleLWSLFdFLMPG 1156 (1549)
T KOG0392|consen 1128 ANHRL-ILSGTPIQNNVLELWSLFDFLMPG 1156 (1549)
T ss_pred hcceE-EeeCCCcccCHHHHHHHHHHhccc
Confidence 44444 466665 444443 44455543
No 162
>PF13245 AAA_19: Part of AAA domain
Probab=98.19 E-value=8.7e-06 Score=54.89 Aligned_cols=51 Identities=25% Similarity=0.429 Sum_probs=38.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhc--cCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~--~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
+.-++|.||.|+|||...+-.+...+. ... +.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 344666999999999665555555542 233 568999999999999999877
No 163
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.19 E-value=6.8e-06 Score=79.80 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=101.5
Q ss_pred CCCcHHHHHHHHhhh----cCCcEEEEcCCCChhH---HHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 54 EKPSAIQQRAVMPII----KGRDVIAQAQSGTGKT---SMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT---~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
..++.+|-+-++-++ +++|.|+.-..|-||| .+|+-.+++..... || .|+++|...+ ..+.+.+..+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~--gp-flvvvplst~-~~W~~ef~~w~- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIH--GP-FLVVVPLSTI-TAWEREFETWT- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhcc--CC-eEEEeehhhh-HHHHHHHHHHh-
Confidence 578999999887654 6889999999999999 34554555544332 33 6888896654 33445555554
Q ss_pred cCCceEEEEECCcchHHHHHHHh----c-----CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHH
Q 022724 127 FINIQAHACVGGKSVGEDIRKLE----H-----GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (293)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~ 197 (293)
..+++.++|+....+.++... . ..+++++|.+.++.- ...+.--...+++|||||.+-.. ...+.
T Consensus 444 --~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~~i~w~~~~vDeahrLkN~--~~~l~ 517 (1373)
T KOG0384|consen 444 --DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELSKIPWRYLLVDEAHRLKND--ESKLY 517 (1373)
T ss_pred --hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc--HhhhccCCcceeeecHHhhcCch--HHHHH
Confidence 678888888876666555442 2 368999999877641 11222234578999999998422 22333
Q ss_pred HHHhhCCCCccEEEEEee-cChhHHHHH
Q 022724 198 DVYRYLPPDLQVVLISAT-LPHEILEMT 224 (293)
Q Consensus 198 ~i~~~l~~~~q~v~~SAt-~~~~~~~~~ 224 (293)
..+..+..+.+++ +|.| +-+.++++.
T Consensus 518 ~~l~~f~~~~rll-itgTPlQNsikEL~ 544 (1373)
T KOG0384|consen 518 ESLNQFKMNHRLL-ITGTPLQNSLKELW 544 (1373)
T ss_pred HHHHHhcccceee-ecCCCccccHHHHH
Confidence 3344454444554 5555 456666544
No 164
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.19 E-value=1.3e-05 Score=73.48 Aligned_cols=76 Identities=22% Similarity=0.186 Sum_probs=61.6
Q ss_pred HHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.+...++..++..|..|+.+++++.-.+|+||.|+|||....-.+++.... . +..+++.+|+..-++|+.+.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~-~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-H-AGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-c-CCceEEEcccchhHHHHHHHHHhc
Confidence 344457788999999999999999999999999999997765444444443 3 447999999999999999988654
No 165
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.18 E-value=2.3e-05 Score=74.26 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHhhhcC-CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
.+++.|..++...... ..++|.||+|+|||....-.+.+.+.. +.++++++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 5689999999998865 678999999999996544333333332 45899999999999999988865
No 166
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.18 E-value=1.3e-05 Score=71.06 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=95.0
Q ss_pred CCCCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q 022724 53 FEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (293)
Q Consensus 53 ~~~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (293)
+..+.|+|.+-+.. +.+|..+++.-..|-|||.-++-.+ ..... ..-.+|+||.. +-..+.+.++.+.....-
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA-~yyra---EwplliVcPAs-vrftWa~al~r~lps~~p- 269 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA-RYYRA---EWPLLIVCPAS-VRFTWAKALNRFLPSIHP- 269 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH-HHHhh---cCcEEEEecHH-HhHHHHHHHHHhcccccc-
Confidence 34578899998876 5578889999999999997655332 22222 22479999943 334566666666554322
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEE
Q 022724 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (293)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~ 211 (293)
+....++.+.... +.....|.|.+.+.+..+-. .+.-....++|+||.|++-+ +-......+...+..-.++|+
T Consensus 270 i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~-sktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 270 IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKD-SKTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhc-cchhhhhhhhhHHHHhhheEE
Confidence 4444444332211 11234678888876654321 12234478999999998743 334446666666666678999
Q ss_pred EEeec
Q 022724 212 ISATL 216 (293)
Q Consensus 212 ~SAt~ 216 (293)
+|.|+
T Consensus 344 LSGTP 348 (689)
T KOG1000|consen 344 LSGTP 348 (689)
T ss_pred ecCCc
Confidence 99996
No 167
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.15 E-value=3e-05 Score=68.89 Aligned_cols=151 Identities=20% Similarity=0.184 Sum_probs=95.3
Q ss_pred CCcHHHHHHHHhhhcCC-----cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 55 KPSAIQQRAVMPIIKGR-----DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~-----~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.+-|+|.+.+..+.+.. .-++.-..|+|||.-....++..+ .+...++++|+.+| .|+.+.+..... -.
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----~ra~tLVvaP~VAl-mQW~nEI~~~T~-gs 257 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----DRAPTLVVAPTVAL-MQWKNEIERHTS-GS 257 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----ccCCeeEEccHHHH-HHHHHHHHHhcc-Cc
Confidence 46789999877655432 356667799999966544444433 33458999999996 688888887765 45
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-------------CCCCcc--EEEecchhhhhccccHH
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-------------RTRAIK--LLVLDESDEMLSRGFKD 194 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~-------------~~~~l~--~iViDE~h~~~~~~~~~ 194 (293)
+++..++|.. .....+.+. +.|++.+|...+.+..+.... .+.+++ -||+||||.+-+. ..
T Consensus 258 lkv~~YhG~~-R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R--~s 333 (791)
T KOG1002|consen 258 LKVYIYHGAK-RDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR--QS 333 (791)
T ss_pred eEEEEEeccc-ccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc--cc
Confidence 7777777653 223334443 479999999888776554211 123344 3999999998543 22
Q ss_pred HHHHHHhhCCCCccEEEEEeec
Q 022724 195 QIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 195 ~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
...+..-.+. ......+|.|+
T Consensus 334 nTArAV~~L~-tt~rw~LSGTP 354 (791)
T KOG1002|consen 334 NTARAVFALE-TTYRWCLSGTP 354 (791)
T ss_pred cHHHHHHhhH-hhhhhhccCCc
Confidence 2222222221 33456777775
No 168
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.09 E-value=3.8e-05 Score=66.09 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=91.3
Q ss_pred HCCCCCCcHHHHHHHHhhhcCC--cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH-------HH
Q 022724 50 QYGFEKPSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-------KV 120 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~~~~--~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~-------~~ 120 (293)
-+|+.--+..|..|+..++... -+.+.|+.|+|||+-++.+.+++....+...++|+.=|+..+-+++- +.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 3577777888999999998763 57788999999999988888888777666667788778877654431 11
Q ss_pred HHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCC----------ccEEEecchhhhhcc
Q 022724 121 ILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRA----------IKLLVLDESDEMLSR 190 (293)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~----------l~~iViDE~h~~~~~ 190 (293)
+..|.+.. .+-.+.+.+..+ ++.+.+...+....+.+.. =.|+|||||+.+
T Consensus 303 m~PWmq~i-------------~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL--- 363 (436)
T COG1875 303 MGPWMQAI-------------FDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL--- 363 (436)
T ss_pred ccchHHHH-------------HhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc---
Confidence 11111000 000111110000 1233444444443333221 268999999977
Q ss_pred ccHHHHHHHHhhCCCCccEEEEE
Q 022724 191 GFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 191 ~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
-..++..++.+..+..++|++.
T Consensus 364 -TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 -TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred -CHHHHHHHHHhccCCCEEEEcC
Confidence 3678999999999999998763
No 169
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.05 E-value=0.00011 Score=71.05 Aligned_cols=121 Identities=19% Similarity=0.175 Sum_probs=74.4
Q ss_pred CCcHHHHHHHHhhhc-CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEE
Q 022724 55 KPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~-~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (293)
.+++-|++++..+.. ++-+++.|+.|+|||... -++...+... +.++++++||--.+..+.+ ..++..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~--g~~V~~~ApTg~Aa~~L~~-------~~g~~a- 420 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA--GYRVIGAALSGKAAEGLQA-------ESGIES- 420 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC--CCeEEEEeCcHHHHHHHHh-------ccCCce-
Confidence 489999999999886 467899999999999542 2333444332 5689999999876666553 122211
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhC-CCCccEEEE
Q 022724 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLI 212 (293)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l-~~~~q~v~~ 212 (293)
.|-.++..-...+...+...++|||||+-++.... +..+++.. ....++|++
T Consensus 421 -----------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~----~~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 421 -----------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQ----MARVLKEAEEAGAKVVLV 473 (744)
T ss_pred -----------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHHH----HHHHHHHHHhcCCEEEEE
Confidence 12222211112223335678999999998874333 33344422 245667666
Q ss_pred E
Q 022724 213 S 213 (293)
Q Consensus 213 S 213 (293)
-
T Consensus 474 G 474 (744)
T TIGR02768 474 G 474 (744)
T ss_pred C
Confidence 5
No 170
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.04 E-value=1.7e-05 Score=74.65 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=78.3
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc-----C-CceEEEEECCcchHHH
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF-----I-NIQAHACVGGKSVGED 144 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~ 144 (293)
-|+=|.+.||+|||.+|+-.+++--.. -.-.+-||+||+.+.-..+.-..+..... . +.+.-.+.-+......
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~-YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~ 153 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKK-YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF 153 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHH-hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH
Confidence 478899999999999998766543222 22357899999998877754433322111 1 2222222221111111
Q ss_pred HHHHhcCCcEEEeChHHHHH------HHhcCCCCCCC---------------ccEEEecchhhhhcc-ccHHHHHHHHhh
Q 022724 145 IRKLEHGVHVVSGTPGRVCD------MIKRKTLRTRA---------------IKLLVLDESDEMLSR-GFKDQIYDVYRY 202 (293)
Q Consensus 145 ~~~~~~~~~ilV~Tp~~l~~------~l~~~~~~~~~---------------l~~iViDE~h~~~~~-~~~~~~~~i~~~ 202 (293)
.-...+.+.+++.|...+.. ++.+......+ =-.+||||-|.|... .....+..+
T Consensus 154 ~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~i~~l--- 230 (985)
T COG3587 154 KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGAIKQL--- 230 (985)
T ss_pred hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHHHHhh---
Confidence 12223566777777655532 22221111111 135999999999753 222222222
Q ss_pred CCCCccEEEEEeecChhHH
Q 022724 203 LPPDLQVVLISATLPHEIL 221 (293)
Q Consensus 203 l~~~~q~v~~SAt~~~~~~ 221 (293)
. ..-++=++||+++...
T Consensus 231 ~--pl~ilRfgATfkd~y~ 247 (985)
T COG3587 231 N--PLLILRFGATFKDEYN 247 (985)
T ss_pred C--ceEEEEecccchhhhc
Confidence 1 2336678999876544
No 171
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.04 E-value=0.00011 Score=72.32 Aligned_cols=123 Identities=20% Similarity=0.122 Sum_probs=76.2
Q ss_pred CCcHHHHHHHHhhhcCC-cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEE
Q 022724 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~-~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (293)
.+++-|.+++..++.++ -+++.|+.|+|||.. +-++...+... |.+++.++||-.-+..+.+ ..|+..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e-------~tGi~a- 414 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENLEG-------GSGIAS- 414 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHHhh-------ccCcch-
Confidence 48999999999998865 578999999999965 33344444332 5689999999876655543 122211
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhC-CCCccEEEE
Q 022724 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLI 212 (293)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l-~~~~q~v~~ 212 (293)
.|..++..-...+...+...++|||||+-++... .+..+++.. ....++|++
T Consensus 415 -----------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 415 -----------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGAKVVLV 467 (988)
T ss_pred -----------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCCEEEEE
Confidence 1222222211122334566789999999977433 344444433 346677766
Q ss_pred Eee
Q 022724 213 SAT 215 (293)
Q Consensus 213 SAt 215 (293)
-=+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 543
No 172
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.03 E-value=1.7e-05 Score=73.10 Aligned_cols=132 Identities=17% Similarity=0.128 Sum_probs=85.3
Q ss_pred CCcHHHHHHHHhhhc-----CCcEEEEcCCCChhHHHHHHHHHhhhc-----cC--CCceeEEEEcCCHHHHHHHHHHHH
Q 022724 55 KPSAIQQRAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVD-----TS--SREVQALILSPTRELATQTEKVIL 122 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~-----~~~~li~~~Tg~GKT~~~~~~~~~~l~-----~~--~~~~~~lil~P~~~l~~q~~~~~~ 122 (293)
.+-|+|..++..+.- +..-|+.-..|-|||+...-.+++.-. .. ......+|+|| ..|..|+...+.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHH
Confidence 467899988877652 245788888999999865544443321 10 11125899999 567888888887
Q ss_pred HhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHH----HHhc--CCCCCCC--ccEEEecchhhhh
Q 022724 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD----MIKR--KTLRTRA--IKLLVLDESDEML 188 (293)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~----~l~~--~~~~~~~--l~~iViDE~h~~~ 188 (293)
.-.....++|+.+||....+-..+.+ ..+||+|+|..-+.. -+.. ....+.+ ...||+||||.+-
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~Ir 476 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIR 476 (901)
T ss_pred HHHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhc
Confidence 65556678999988887533233333 457999999865554 1111 1111222 3569999999984
No 173
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.96 E-value=1.5e-05 Score=76.88 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=91.6
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
.|+++|--.=-.+ .+.-+....||-|||+++.+|++-..... .-+=+++.+..||..=.+.+..+...+|++|.+
T Consensus 138 ~~ydVQLiGgivL--h~G~IAEM~TGEGKTLvatlp~yLnAL~G---~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~ 212 (1025)
T PRK12900 138 VPYDVQLIGGIVL--HSGKISEMATGEGKTLVSTLPTFLNALTG---RGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGV 212 (1025)
T ss_pred cccchHHhhhHHh--hcCCccccCCCCCcchHhHHHHHHHHHcC---CCcEEEeechHhhhhhHHHHHHHHHHhCCeeee
Confidence 3666665533333 34457899999999999999986655553 346778888999999999999999999999998
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEecchhhhh
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~------~~~~~~l~~iViDE~h~~~ 188 (293)
...+.+....... -.|||.-||...| .++|+.+ ....+.+.|.||||+|.++
T Consensus 213 i~~~~~~~~Rr~a--Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 213 ILNTMRPEERREQ--YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 8766555443333 3479999998666 2344432 1224778999999999975
No 174
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.95 E-value=2.9e-05 Score=70.63 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=52.4
Q ss_pred CCcHHHHHHHHhhhcCC-cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~-~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
.+.+-|..|+......+ -.++.||+|+|||......+.+.+.. +.++++.+||..-++.+.+++
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHHh
Confidence 57889999999887764 57888999999998766666666655 358999999999999988864
No 175
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.93 E-value=8.5e-05 Score=72.18 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=100.0
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhh--ccCCCceeEEEEcCCHHHHHHHHHHHHHhhccC
Q 022724 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTV--DTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l--~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (293)
.++.||..-++.+. ++-|-|+.-..|-|||.- .+.++.++ .....|+ -+|++||--+. .+.=.+++|..
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnWGP-HLIVVpTsviL-nWEMElKRwcP-- 689 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNWGP-HLIVVPTSVIL-NWEMELKRWCP-- 689 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCCCC-ceEEeechhhh-hhhHHHhhhCC--
Confidence 47789998877654 345889999999999943 33344443 2334454 58888876543 34445677754
Q ss_pred CceEEEEECCcchHHHHH-HHh--cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCC
Q 022724 129 NIQAHACVGGKSVGEDIR-KLE--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (293)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~-~~~--~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~ 205 (293)
++++..++|........+ .|. +..+|.|++...+.+-+. .|.-.+..|+|+||+|.+-.+. ...+..++...
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfk-sqrWQAllnfn-- 764 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFK-SQRWQALLNFN-- 764 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchh-HHHHHHHhccc--
Confidence 678888898865443332 232 446889998877776443 4455778999999999984432 23345554443
Q ss_pred CccEEEEEeec-ChhHHH
Q 022724 206 DLQVVLISATL-PHEILE 222 (293)
Q Consensus 206 ~~q~v~~SAt~-~~~~~~ 222 (293)
..|.++++.|. .+.+.+
T Consensus 765 sqrRLLLtgTPLqNslmE 782 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSLME 782 (1958)
T ss_pred hhheeeecCCchhhHHHH
Confidence 34556666664 444333
No 176
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00044 Score=61.47 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=70.2
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhh-ccCCCceeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l-~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (293)
+.++++||||+|||....--+.... .....+.++.++. +.+.-+..+ ++.+....++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-------------
Confidence 4689999999999976543332221 1111233444444 334444333 33444444443321
Q ss_pred HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc-cHHHHHHHHhhCCCC-ccEEEEEeecC-hhHHHHH
Q 022724 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPD-LQVVLISATLP-HEILEMT 224 (293)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~-~~~~~~~i~~~l~~~-~q~v~~SAt~~-~~~~~~~ 224 (293)
+-+++.+...+.. +.+.++|+||++....... ....+..++...... -.++.+|||.. +++.+..
T Consensus 239 --------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 239 --------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred --------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 1234444444432 3567999999998874321 223445555544433 46788999985 4455555
Q ss_pred Hhc
Q 022724 225 TKF 227 (293)
Q Consensus 225 ~~~ 227 (293)
..+
T Consensus 307 ~~~ 309 (388)
T PRK12723 307 HQF 309 (388)
T ss_pred HHh
Confidence 555
No 177
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.90 E-value=4.4e-05 Score=66.13 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=74.6
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
+++-|.+++.. .+.+++|.|+.|||||.+.+--+...+... -...+++++++|+..+.++.+++...........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~-- 76 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES-- 76 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc--
Confidence 46789998888 788999999999999987766665555544 2345899999999999999999987643321100
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHH-HHhcCCCCC-CCccEEEecchh
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRT-RAIKLLVLDESD 185 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~-~l~~~~~~~-~~l~~iViDE~h 185 (293)
...............+.|+|-..+.. +++...... -.-.+-++|+..
T Consensus 77 ----~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 ----SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00001111112234678888887776 333321111 122455666665
No 178
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0003 Score=63.25 Aligned_cols=176 Identities=18% Similarity=0.238 Sum_probs=111.8
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCC-CChh--HHHHHHHHHhhhccC----------------------------CCce
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQS-GTGK--TSMIALTVCQTVDTS----------------------------SREV 102 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~T-g~GK--T~~~~~~~~~~l~~~----------------------------~~~~ 102 (293)
..+|+.|.+.+....+.+|++..-.| +.|+ +-.|.+.+++++.+. -..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46899999999999999998765443 3444 456777777766211 1347
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhccCCc---------eEEEEECCc--------chHHHHHHH-----------------
Q 022724 103 QALILSPTRELATQTEKVILAIGDFINI---------QAHACVGGK--------SVGEDIRKL----------------- 148 (293)
Q Consensus 103 ~~lil~P~~~l~~q~~~~~~~~~~~~~~---------~~~~~~~~~--------~~~~~~~~~----------------- 148 (293)
++||+||+++-|-.+.+.+..+....+- +...-+++. +.....+.+
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 8999999999999999988776322110 111111110 000111111
Q ss_pred --------hcCCcEEEeChHHHHHHHhcC-----CC-CCCCccEEEecchhhhhccccHHHHHHHHhhCCC---------
Q 022724 149 --------EHGVHVVSGTPGRVCDMIKRK-----TL-RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP--------- 205 (293)
Q Consensus 149 --------~~~~~ilV~Tp~~l~~~l~~~-----~~-~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~--------- 205 (293)
....||+||+|--|-.++.+. .+ .++.+.++|||-+|.++-..|. ++..++..+..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCC
Confidence 124689999998777766531 12 2588899999999998755443 44445544421
Q ss_pred ---------------CccEEEEEeecChhHHHHHHhcCCC
Q 022724 206 ---------------DLQVVLISATLPHEILEMTTKFMTD 230 (293)
Q Consensus 206 ---------------~~q~v~~SAt~~~~~~~~~~~~~~~ 230 (293)
-.|.+++|+--.+....+...+..+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N 493 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQN 493 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 2588888888888777777666543
No 179
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.80 E-value=0.00052 Score=68.26 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhhc-CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~-~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
.++..+......+ ..+++-|.+++..+.. ++-.++.|+.|+|||.+. -++...+... |.+++.++||-.-+..+.
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~--G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEAA--GYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEEcCcHHHHHHHH
Confidence 4444444443333 3599999999998864 567899999999999543 2343434332 568999999977776654
Q ss_pred HHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHH
Q 022724 119 KVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (293)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~ 198 (293)
+ ..|+... |-.++..-...+...+..-++|||||+.++.. ..+..
T Consensus 443 e-------~~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~ 487 (1102)
T PRK13826 443 K-------EAGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMAL 487 (1102)
T ss_pred H-------hhCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHH
Confidence 3 2232221 22222111112223456678999999998743 33444
Q ss_pred HHhhCC-CCccEEEEEee
Q 022724 199 VYRYLP-PDLQVVLISAT 215 (293)
Q Consensus 199 i~~~l~-~~~q~v~~SAt 215 (293)
+++... ...++|++-=+
T Consensus 488 Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 488 FVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHhcCCEEEEECCH
Confidence 555543 45677776544
No 180
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.77 E-value=4.9e-05 Score=73.70 Aligned_cols=126 Identities=19% Similarity=0.225 Sum_probs=89.2
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (293)
|+++|-- -.+.=.+.-+..+.||-|||+++.+|+.-..... .-+-+++.+..||..=.+.+..+...+|+.+.+.
T Consensus 170 ~yDVQli--GgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~G---kgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i 244 (1112)
T PRK12901 170 HYDVQLI--GGVVLHQGKIAEMATGEGKTLVATLPVYLNALTG---NGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCI 244 (1112)
T ss_pred ccchHHh--hhhhhcCCceeeecCCCCchhHHHHHHHHHHHcC---CCcEEEEechhhhhccHHHHHHHHHHhCCceeec
Confidence 5555544 4444445568899999999999999887665553 3467788889999998999999999999999877
Q ss_pred ECC-cchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEecchhhhh
Q 022724 136 VGG-KSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~------~~~~~~l~~iViDE~h~~~ 188 (293)
... .+..+. +.. -.+||.-+|...| .++|+.+ ....+.+.|.||||+|.++
T Consensus 245 ~~~~~~~~~r-r~a-Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 245 DKHQPNSEAR-RKA-YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCCCCCHHHH-HHh-CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 653 333322 222 3479999997665 2344432 1234668999999999975
No 181
>PRK04296 thymidine kinase; Provisional
Probab=97.73 E-value=0.00034 Score=56.25 Aligned_cols=110 Identities=12% Similarity=0.163 Sum_probs=56.9
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC---HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT---RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (293)
|.-.++.||+|+|||...+- .+.++... +.+++++-|. +.... .+....++...
T Consensus 2 g~i~litG~~GsGKTT~~l~-~~~~~~~~--g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~------------- 58 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQ-RAYNYEER--GMKVLVFKPAIDDRYGEG-------KVVSRIGLSRE------------- 58 (190)
T ss_pred cEEEEEECCCCCHHHHHHHH-HHHHHHHc--CCeEEEEeccccccccCC-------cEecCCCCccc-------------
Confidence 34578899999999965443 33443332 4577777662 21111 11111121110
Q ss_pred HHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEee
Q 022724 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (293)
Q Consensus 147 ~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt 215 (293)
.+.+..++.+...+.. .-.+.++|||||+|.+.. .++..+++.+.+....+++++-
T Consensus 59 ------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~~----~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 ------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLDK----EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred ------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCCH----HHHHHHHHHHHHcCCeEEEEec
Confidence 1223445555555444 335678999999987522 2344455554333344555544
No 182
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.70 E-value=0.00013 Score=60.64 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=66.9
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECC-cchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGG-KSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+..|.+|||+.+---|-++.+.++.+.. -+..+..++.. ....++...+. ...+|.||||+++..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4468999999987777788887776631 12344444433 46777877776 478999999999999999999999999
Q ss_pred cEEEecchhh
Q 022724 177 KLLVLDESDE 186 (293)
Q Consensus 177 ~~iViDE~h~ 186 (293)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999997553
No 183
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.70 E-value=0.00079 Score=50.86 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChhHHH
Q 022724 70 GRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~ 86 (293)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999953
No 184
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.70 E-value=0.0002 Score=60.27 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=35.9
Q ss_pred CCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeec---ChhHHHHHHhc
Q 022724 172 RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL---PHEILEMTTKF 227 (293)
Q Consensus 172 ~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~---~~~~~~~~~~~ 227 (293)
....++.||+||+|.|....+ ..+.+.+...+...+++++.-.+ ++.+...+.++
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred CCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHh
Confidence 356679999999999965543 34556666666677888876654 33344444443
No 185
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.65 E-value=0.0003 Score=52.65 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=12.7
Q ss_pred cCCcEEEEcCCCChhHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~ 88 (293)
+++.+++.||+|+|||....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 35678999999999996543
No 186
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.63 E-value=0.00053 Score=65.18 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=48.8
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHh---hhc-----------c--------C----------
Q 022724 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQ---TVD-----------T--------S---------- 98 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~---~l~-----------~--------~---------- 98 (293)
.|++.|...+..++ ...+.++..|||+|||++.+=..+. .+. . .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 58999998777765 4578999999999999776544332 221 0 0
Q ss_pred --C-----CceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 99 --S-----REVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 99 --~-----~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
+ .-+++.|-.-|..-..|+.+.+++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 0 1256777777888788888777654
No 187
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.00015 Score=65.26 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHhhhcC-----CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 55 KPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~-----~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.|.--|-+||..+..| +.-.+-|.||||||+...-.+ ..+. .-++|++|++.||.|++..++.++....
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI-~~~~-----rPtLV~AhNKTLAaQLy~Efk~fFP~Na 85 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVI-AKVQ-----RPTLVLAHNKTLAAQLYSEFKEFFPENA 85 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHH-HHhC-----CCeEEEecchhHHHHHHHHHHHhCcCcc
Confidence 3777788888877643 477888999999997754333 2222 2489999999999999999999987765
Q ss_pred ceEE
Q 022724 130 IQAH 133 (293)
Q Consensus 130 ~~~~ 133 (293)
+...
T Consensus 86 VEYF 89 (663)
T COG0556 86 VEYF 89 (663)
T ss_pred eEEE
Confidence 5443
No 188
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.62 E-value=0.00028 Score=52.93 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
+..+++.||+|+|||.... .+...+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~-~l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR-ALARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHH-HHHhccCCCC--CCEEEECCEEcc
Confidence 5689999999999995543 2223332221 246777765443
No 189
>PRK08181 transposase; Validated
Probab=97.60 E-value=0.0008 Score=56.96 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=33.0
Q ss_pred cHHHHHHHHh----hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 57 SAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 57 ~~~Q~~~~~~----i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
.+.|..++.. +..++++++.||+|+|||.... ++...+... |.++++ ++..+|+.++.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~--g~~v~f-~~~~~L~~~l~ 150 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIEN--GWRVLF-TRTTDLVQKLQ 150 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHHc--CCceee-eeHHHHHHHHH
Confidence 4555555532 3367899999999999994433 222222222 334444 44455555553
No 190
>PRK06526 transposase; Provisional
Probab=97.53 E-value=0.00051 Score=57.75 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCChhHHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~~ 88 (293)
..+.++++.||+|+|||....
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hcCceEEEEeCCCCchHHHHH
Confidence 356799999999999995543
No 191
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0032 Score=55.75 Aligned_cols=128 Identities=13% Similarity=0.245 Sum_probs=67.0
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc--CCH-HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTR-ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~--P~~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (293)
+.++++||||+|||.....-+.. +... +.++.++. |.+ ..+.|+.. +....++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~~--GkkVglI~aDt~RiaAvEQLk~----yae~lgipv--------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHGK--KKTVGFITTDHSRIGTVQQLQD----YVKTIGFEV--------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHHc--CCcEEEEecCCcchHHHHHHHH----HhhhcCCcE---------------
Confidence 56899999999999655433332 3222 33444444 333 23334333 222222222
Q ss_pred HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc-ccHHHHHHHHhhCCCCccEEEEEeecC-hhHHHHHH
Q 022724 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMTT 225 (293)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~~~~q~v~~SAt~~-~~~~~~~~ 225 (293)
+.+.+|..+...+..-.- ..+.++|+||-+=..... .....+..+++...+..-++.+|||.. .++.+.+.
T Consensus 300 ------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 300 ------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 223466666655533111 124789999988654322 223334455544444445667888765 45566665
Q ss_pred hc
Q 022724 226 KF 227 (293)
Q Consensus 226 ~~ 227 (293)
.+
T Consensus 373 ~F 374 (436)
T PRK11889 373 NF 374 (436)
T ss_pred Hh
Confidence 54
No 192
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.40 E-value=0.00062 Score=60.51 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=42.5
Q ss_pred CcHHHHHHHHhh------hcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 022724 56 PSAIQQRAVMPI------IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (293)
Q Consensus 56 ~~~~Q~~~~~~i------~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~ 117 (293)
+++-|++++..+ .++.++.+.|+-|+|||..+- .+.+.+.. .+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc--ccceEEEecchHHHHHhc
Confidence 677899998888 577899999999999995432 22233333 345788888987766555
No 193
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.39 E-value=0.00088 Score=64.33 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=53.7
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
.+++-|++++... +.+++|.|+.|||||.+..--+.+.+.... ...++++++-|+..|.++.+++..+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 3788999988763 567899999999999876655555554322 23479999999999999999988754
No 194
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.38 E-value=0.0014 Score=63.02 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC-CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 022724 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (293)
Q Consensus 39 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~ 117 (293)
.+.+++... -...++.-|++|+-..+.- ...+|.|-+|+|||..... ++..+... |.++++.+=|..-++.+
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~~--gkkVLLtsyThsAVDNI 729 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVAL--GKKVLLTSYTHSAVDNI 729 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHHc--CCeEEEEehhhHHHHHH
Confidence 345555443 2346889999999987765 4578889999999955432 22333332 45788888899888888
Q ss_pred HHHHHHhhccCCceEEEEE---------------CCc--chHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEE
Q 022724 118 EKVILAIGDFINIQAHACV---------------GGK--SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (293)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iV 180 (293)
.-.++.+. +.+.-+- .+. ..-+..+...+.+.|+.+|=-.+.+ ..+..+.+++.|
T Consensus 730 LiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~----plf~~R~FD~cI 801 (1100)
T KOG1805|consen 730 LIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH----PLFVNRQFDYCI 801 (1100)
T ss_pred HHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc----hhhhccccCEEE
Confidence 87776542 2111111 111 1112233444567788777422222 234456689999
Q ss_pred ecchhhhh
Q 022724 181 LDESDEML 188 (293)
Q Consensus 181 iDE~h~~~ 188 (293)
||||-++.
T Consensus 802 iDEASQI~ 809 (1100)
T KOG1805|consen 802 IDEASQIL 809 (1100)
T ss_pred Eccccccc
Confidence 99999875
No 195
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.38 E-value=0.00021 Score=64.55 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (293)
++-++=+|||.||||-- +++++...+ ..+|-.|.+-||.++++++.+.+ +.+..+.|..-..... -.
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~--~~ 257 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLD--NG 257 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCC--CC
Confidence 34566779999999954 567776654 45899999999999999888754 4443444332111000 01
Q ss_pred cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc
Q 022724 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (293)
Q Consensus 150 ~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~ 192 (293)
+.++.+=||.|+.. --..++..||||+++|-+...
T Consensus 258 ~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~R 292 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSR 292 (700)
T ss_pred CcccceEEEEEEee--------cCCceEEEEehhHHhhcCccc
Confidence 23455666664332 124568899999999876543
No 196
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.36 E-value=0.008 Score=53.11 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC-H-HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT-R-ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~-~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (293)
++.+.++||||.|||...+=-+........+..-+||-.-+ | .-++|+.... +-.++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya----~im~vp~--------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYA----DIMGVPL--------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHH----HHhCCce---------------
Confidence 67899999999999965433222222222223345666654 3 3344443333 2333333
Q ss_pred HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh-ccccHHHHHHHHhhCCCCccEEEEEeecC-hhHHHHHH
Q 022724 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMTT 225 (293)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~-~~~~~~~~~~i~~~l~~~~q~v~~SAt~~-~~~~~~~~ 225 (293)
.+|-+|.-|...+. .+.+.++|.||=+-+=. +......+..++....+.-..+.+|||.. .+++....
T Consensus 264 ------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 ------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred ------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 34455655555443 24555777777664321 12234455555555544455677888874 55666666
Q ss_pred hcC
Q 022724 226 KFM 228 (293)
Q Consensus 226 ~~~ 228 (293)
.+.
T Consensus 334 ~f~ 336 (407)
T COG1419 334 QFS 336 (407)
T ss_pred Hhc
Confidence 654
No 197
>PRK06921 hypothetical protein; Provisional
Probab=97.36 E-value=0.003 Score=53.54 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~ 117 (293)
++++++.|++|+|||.... ++...+... .+..++++. ..++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~-~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK-KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh-cCceEEEEE-HHHHHHHH
Confidence 5789999999999994432 344444332 134455554 34444443
No 198
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.35 E-value=0.00076 Score=62.78 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=96.0
Q ss_pred CcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhhccCC--CceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 56 PSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS--REVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 56 ~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~--~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
+..+|-..++.+. +|-|-|+.-..|-|||.-.+ .++.++.... .|| -++++|...| ..+...+.++.. .
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsi-svlAhLaE~~nIwGP-FLVVtpaStL-~NWaqEisrFlP--~ 642 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSI-SVLAHLAETHNIWGP-FLVVTPASTL-HNWAQEISRFLP--S 642 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHHH-HHHHHHHHhccCCCc-eEEeehHHHH-hHHHHHHHHhCc--c
Confidence 4567777766554 67899999999999995433 4444443332 233 6788886554 344555555543 4
Q ss_pred ceEEEEECCcchHHHHHH---------HhcCCcEEEeChHHHHH---HHhcCCCCCCCccEEEecchhhhhccccHHHHH
Q 022724 130 IQAHACVGGKSVGEDIRK---------LEHGVHVVSGTPGRVCD---MIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~---------~~~~~~ilV~Tp~~l~~---~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~ 197 (293)
++++-+.|+.+.....++ -..+.+|+|++.+.++. ++. --+..+.|+|||+.+-.. ....+.
T Consensus 643 ~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~q-----kvKWQYMILDEAQAIKSS-sS~RWK 716 (1185)
T KOG0388|consen 643 FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQ-----KVKWQYMILDEAQAIKSS-SSSRWK 716 (1185)
T ss_pred ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHH-----hhhhhheehhHHHHhhhh-hhhHHH
Confidence 678888888877666555 23457899998866643 222 234578999999988432 233444
Q ss_pred HHHhhCCCCccEEEEEeec-ChhHHH
Q 022724 198 DVYRYLPPDLQVVLISATL-PHEILE 222 (293)
Q Consensus 198 ~i~~~l~~~~q~v~~SAt~-~~~~~~ 222 (293)
.+++.- ..-.++++.|+ -+.+.+
T Consensus 717 tLLsF~--cRNRLLLTGTPIQNsMqE 740 (1185)
T KOG0388|consen 717 TLLSFK--CRNRLLLTGTPIQNSMQE 740 (1185)
T ss_pred HHhhhh--ccceeeecCCccchHHHH
Confidence 444432 33466777776 344333
No 199
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.35 E-value=0.0016 Score=59.57 Aligned_cols=46 Identities=9% Similarity=0.203 Sum_probs=27.1
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
+.+++.||+|+|||... -++...+.....+.+++++ +..++..+..
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYV-TSEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEE-EHHHHHHHHH
Confidence 46899999999999443 2344444443334456665 4445544433
No 200
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.0016 Score=57.50 Aligned_cols=129 Identities=18% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC-C-HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP-T-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P-~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (293)
|..++++||||+|||....--+........ ..++.++.. + +.-+. +.++.+....++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~D~~R~ga~---EqL~~~a~~~gv~~~~------------- 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTTDSYRIGGH---EQLRIFGKILGVPVHA------------- 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecccccccHH---HHHHHHHHHcCCceEe-------------
Confidence 568999999999999665433333222211 123444432 2 22222 2333333333443322
Q ss_pred HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc-ccHHHHHHHHhhCCCCccEEEEEeecChhH-HHHHH
Q 022724 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEI-LEMTT 225 (293)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~-~~~~~ 225 (293)
+-+++.+...+.. +.+.++++||++-....+ .....+..+.........++.+|||..... .+..+
T Consensus 200 --------~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 200 --------VKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred --------cCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 2333333333321 345578889988543211 122333333222223345788899985443 33444
Q ss_pred hc
Q 022724 226 KF 227 (293)
Q Consensus 226 ~~ 227 (293)
.+
T Consensus 268 ~f 269 (374)
T PRK14722 268 AY 269 (374)
T ss_pred HH
Confidence 33
No 201
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.31 E-value=0.0041 Score=48.01 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=23.1
Q ss_pred EEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
+++.||+|+|||......+ ..... .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~-~~~~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLA-LNIAT--KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHH-HHHHh--cCCEEEEEECCcch
Confidence 6899999999996543332 22222 24467777654443
No 202
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.29 E-value=0.0014 Score=63.65 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
..+++-|++++... ..+++|.|+.|||||.+..--+.+.+.... ...++++++-|+..|.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35899999988753 568999999999999775555544443322 234899999999999999999988653
No 203
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.26 E-value=0.0017 Score=62.06 Aligned_cols=144 Identities=22% Similarity=0.279 Sum_probs=89.5
Q ss_pred HHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCc--eeEEEEcCCHHHHHHHHHHHHH-----hhccCCceEE
Q 022724 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATQTEKVILA-----IGDFINIQAH 133 (293)
Q Consensus 61 ~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~--~~~lil~P~~~l~~q~~~~~~~-----~~~~~~~~~~ 133 (293)
..++..+..+.-++|.+.||+|||.-+.--+++.+.....+ ..+.+--|++..+..+.+++-. .+...+.++.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vR 463 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVR 463 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccc
Confidence 34555566677889999999999999888888887665443 3456666998888887776632 2222222221
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhC---CCCccEE
Q 022724 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL---PPDLQVV 210 (293)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l---~~~~q~v 210 (293)
.. +..+.. . -.|+.+|-+-+++++.++ +..+.++|+||+|...-. ...+..+++.+ .....++
T Consensus 464 f~-Sa~prp-------y-g~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 464 FD-SATPRP-------Y-GSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred cc-cccccc-------c-cceeeeccchhhhhhhhc---ccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhh
Confidence 10 011100 0 158999999999988876 455789999999986322 22222222222 2345566
Q ss_pred EEEeecCh
Q 022724 211 LISATLPH 218 (293)
Q Consensus 211 ~~SAt~~~ 218 (293)
+||||+..
T Consensus 530 lmsatIdT 537 (1282)
T KOG0921|consen 530 LMSATIDT 537 (1282)
T ss_pred hhhcccch
Confidence 66666543
No 204
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.25 E-value=0.0012 Score=54.26 Aligned_cols=107 Identities=19% Similarity=0.331 Sum_probs=59.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcC
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (293)
.+++.||+|+|||- -+-++.+.+.....+.+++++.. .+......+.++.
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhccccccceeecH-HHHHHHHHHHHHc----------------------------
Confidence 48999999999995 34445555544333556776654 2333333332221
Q ss_pred CcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc-cHHHHHHHHhhCC-CCccEEEEEeecChhH
Q 022724 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLP-PDLQVVLISATLPHEI 220 (293)
Q Consensus 152 ~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~-~~~~~~~i~~~l~-~~~q~v~~SAt~~~~~ 220 (293)
...+.+.+. +...++++||++|.+.... +...+..++..+. ...++|+.|...|..+
T Consensus 86 -----~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -----GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -----TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -----ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 112222222 3467899999999986542 3444444444443 4566766665665543
No 205
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0024 Score=63.27 Aligned_cols=158 Identities=18% Similarity=0.125 Sum_probs=96.2
Q ss_pred CCCcHHHHHHHHhhh-----cCCcEEEEcCCCChhHHHHHHHHHhhhccCCC-ceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 54 EKPSAIQQRAVMPII-----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-EVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~-----~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
..+.++|.+.++.+. .+.+-++.-..|.|||...+..+......... .+.++++||+ +++..+.+.+.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 457888998886644 25678888999999997655555442222222 3478999995 4456777777776655
Q ss_pred CCceEEEEECCcch----HHHHHHHhcC-----CcEEEeChHHHHHHH-hcCCCCCCCccEEEecchhhhhccccHHHHH
Q 022724 128 INIQAHACVGGKSV----GEDIRKLEHG-----VHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (293)
Q Consensus 128 ~~~~~~~~~~~~~~----~~~~~~~~~~-----~~ilV~Tp~~l~~~l-~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~ 197 (293)
... +...+|.... .+....+... .+++++|.+.+.... ....+.-.....+|+||+|.+-... .....
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHH
Confidence 443 5556665541 3333333321 689999998887732 1223444667899999999974332 22222
Q ss_pred HHHhhCCCCccEEEEEeec
Q 022724 198 DVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 198 ~i~~~l~~~~q~v~~SAt~ 216 (293)
.+. .+....+ +.+|.|+
T Consensus 494 ~l~-~~~~~~~-~~LtgTP 510 (866)
T COG0553 494 ALQ-FLKALNR-LDLTGTP 510 (866)
T ss_pred HHH-HHhhcce-eeCCCCh
Confidence 222 3332233 6777776
No 206
>PRK05642 DNA replication initiation factor; Validated
Probab=97.24 E-value=0.0011 Score=55.10 Aligned_cols=44 Identities=16% Similarity=0.399 Sum_probs=28.1
Q ss_pred CccEEEecchhhhhcc-ccHHHHHHHHhhCCCCccEEEEEeecCh
Q 022724 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH 218 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~~~~q~v~~SAt~~~ 218 (293)
+.+++|+||+|.+... .+...+-.++..+..+...++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4578999999987433 3445566666555544455667777544
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.24 E-value=0.009 Score=52.24 Aligned_cols=129 Identities=21% Similarity=0.311 Sum_probs=72.2
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC---HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT---RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
-++++|++|+|||....-.+ ..+... +.+++++... .....|+..... ..++.+.....+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~----~lgv~v~~~~~g~--------- 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAE----RLGVKVIKHKYGA--------- 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHHc--CCeEEEecCCcCcHHHHHHHHHHHH----HcCCceecccCCC---------
Confidence 47889999999996544333 233322 3456665543 334444443333 3444443211111
Q ss_pred hcCCcEEEeChHHH-HHHHhcCCCCCCCccEEEecchhhhhc-cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHh
Q 022724 149 EHGVHVVSGTPGRV-CDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l-~~~l~~~~~~~~~l~~iViDE~h~~~~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~ 226 (293)
.|..+ ...+... ...+.++|+||.+..+.. ......+..+.+...+...++.++|+...+....+..
T Consensus 206 ---------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 206 ---------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred ---------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 11111 1111110 123457999999998753 3456667777777777788899999887766655554
Q ss_pred c
Q 022724 227 F 227 (293)
Q Consensus 227 ~ 227 (293)
+
T Consensus 275 f 275 (336)
T PRK14974 275 F 275 (336)
T ss_pred H
Confidence 4
No 208
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.23 E-value=0.001 Score=64.10 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=87.9
Q ss_pred CCCcHHHHHHHHhhh---cC-CcEEEEcCCCChhHHHHHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhhccC
Q 022724 54 EKPSAIQQRAVMPII---KG-RDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGDFI 128 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~---~~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (293)
..+.++|...+.... ++ -|-++.-.+|-|||..-.--+..-+.... .|| -+|++|+-.|.+=. ..+..|...
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP-~LvivPlstL~NW~-~Ef~kWaPS- 469 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGP-FLIIVPLSTLVNWS-SEFPKWAPS- 469 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCC-eEEeccccccCCch-hhccccccc-
Confidence 368899999887654 23 47888899999999554333333222222 243 68889988876533 334444432
Q ss_pred CceEEEEECCcchHHHH--HHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCC
Q 022724 129 NIQAHACVGGKSVGEDI--RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (293)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~ 206 (293)
+....+.|........ +......+|+++|.+.+.. ....+.--+..++||||-|.|-. ....+...+.-....
T Consensus 470 -v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~L~t~y~~ 544 (1157)
T KOG0386|consen 470 -VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKN--AICKLTDTLNTHYRA 544 (1157)
T ss_pred -eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccc--hhhHHHHHhhccccc
Confidence 3333333332222211 1122567999999987665 11222334567899999999832 223333333322234
Q ss_pred ccEEEEEeec
Q 022724 207 LQVVLISATL 216 (293)
Q Consensus 207 ~q~v~~SAt~ 216 (293)
...++++.|.
T Consensus 545 q~RLLLTGTP 554 (1157)
T KOG0386|consen 545 QRRLLLTGTP 554 (1157)
T ss_pred hhhhhhcCCh
Confidence 4556677775
No 209
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.23 E-value=0.033 Score=59.64 Aligned_cols=206 Identities=12% Similarity=0.124 Sum_probs=107.0
Q ss_pred CCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q 022724 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (293)
.+++-|++++..++.. +-.+|.|+.|+|||... -.++..+.. .|.+++.++|+-.-+..+.+....-.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE--QGYEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 4789999999998764 57899999999999542 233333333 25689999999887777665322100
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhC-CCCccEEE
Q 022724 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVL 211 (293)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l-~~~~q~v~ 211 (293)
.........+.++ .-..|...+. .....+..-++|||||+-++.. ..+..+++.. ..+.++|+
T Consensus 499 ------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred ------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCCEEEE
Confidence 0000111111111 1112222222 1223345678999999997743 3455555544 35788887
Q ss_pred EEee--cC----hhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHH-hhC-CCCcEEEEcccch
Q 022724 212 ISAT--LP----HEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-DTL-TITQAVIFCNTKR 283 (293)
Q Consensus 212 ~SAt--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~-~~~-~~~~~iIF~~s~~ 283 (293)
+-=+ ++ ..+...+.... -+.. ...........+ .+...+. ......+..-+ ... ...+++|+..+.+
T Consensus 563 vGD~~QL~sV~aG~~f~~L~~~g-v~t~-~l~~i~rq~~~v--~i~~~~~-~~r~~~ia~~y~~L~~~r~~tliv~~t~~ 637 (1960)
T TIGR02760 563 LNDSAQRQGMSAGSAIDLLKEGG-VTTY-AWVDTKQQKASV--EISEAVD-KLRVDYIASAWLDLTPDRQNSQVLATTHR 637 (1960)
T ss_pred EcChhhcCccccchHHHHHHHCC-CcEE-EeecccccCcce--eeeccCc-hHHHHHHHHHHHhcccccCceEEEcCCcH
Confidence 7654 21 12233333321 1111 111111111111 1222222 22333443333 322 3346999999988
Q ss_pred hHHHHHhh
Q 022724 284 KVLLLVLQ 291 (293)
Q Consensus 284 ~a~~l~~~ 291 (293)
+.+.+...
T Consensus 638 dr~~Ln~~ 645 (1960)
T TIGR02760 638 EQQDLTQI 645 (1960)
T ss_pred HHHHHHHH
Confidence 87776543
No 210
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.22 E-value=0.0029 Score=57.14 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=23.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
+.+++.||+|+|||... .++.+.+.....+.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 35889999999999543 34445554433345666664
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.21 E-value=0.0025 Score=51.45 Aligned_cols=127 Identities=18% Similarity=0.280 Sum_probs=64.5
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (293)
-++++||||+|||....--+...... +.++.+++ ..|.=+.++.+ .+....++.+.......+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~---~~a~~l~vp~~~~~~~~~--------- 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLK---TYAEILGVPFYVARTESD--------- 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHH---HHHHHHTEEEEESSTTSC---------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHH---HHHHHhccccchhhcchh---------
Confidence 47899999999997654433333333 23444444 23443333333 333333444433221111
Q ss_pred cCCcEEEeChHHHH-HHHhcCCCCCCCccEEEecchhhhhc-cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHH
Q 022724 150 HGVHVVSGTPGRVC-DMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (293)
Q Consensus 150 ~~~~ilV~Tp~~l~-~~l~~~~~~~~~l~~iViDE~h~~~~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~ 224 (293)
|..+. +.++. ...++.++|+||-+-+... ......+..+.....+..-.+.+|||...+.....
T Consensus 68 ---------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 68 ---------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp ---------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred ---------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 21211 12221 1124467888888765422 23345666666666666778889999876544433
No 212
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.19 E-value=0.0018 Score=59.74 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=82.2
Q ss_pred HHHHHHHHhhh-----cC----CcEEEEcCCCChhHHHHHHHHHhhh-ccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 58 AIQQRAVMPII-----KG----RDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 58 ~~Q~~~~~~i~-----~~----~~~li~~~Tg~GKT~~~~~~~~~~l-~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
|||+-++-.+. .| +.+++..|=|.|||......++..+ .....+..+++.+++++-+..+++.++.+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 67887777665 12 3688888999999966554444444 33344678999999999999999988876543
Q ss_pred CCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc--CCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCC
Q 022724 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (293)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~--~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~ 205 (293)
...... ... ...... ..-.|.....+.....+.. ...+=.+.+++|+||+|.+-+......+..-.... +
T Consensus 81 ~~~l~~-~~~-----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r-~ 152 (477)
T PF03354_consen 81 SPELRK-RKK-----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR-P 152 (477)
T ss_pred Chhhcc-chh-----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-C
Confidence 211000 000 000000 0112222221222222211 22222457899999999986544444444444442 3
Q ss_pred CccEEEEEe
Q 022724 206 DLQVVLISA 214 (293)
Q Consensus 206 ~~q~v~~SA 214 (293)
+.+++.+|.
T Consensus 153 ~pl~~~IST 161 (477)
T PF03354_consen 153 NPLIIIIST 161 (477)
T ss_pred CceEEEEeC
Confidence 555555543
No 213
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.15 E-value=0.0022 Score=62.25 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
.+++-|++++... ..+++|.|+.|||||.+..--+.+.+... -...++++++-|+..|.++.+++.++..
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999988753 46899999999999977555454444322 2234799999999999999999988653
No 214
>PHA02533 17 large terminase protein; Provisional
Probab=97.14 E-value=0.005 Score=57.29 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=85.1
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC--ceE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQA 132 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~--~~~ 132 (293)
.+.|+|...+..+..++-.++..+=..|||.+....++...... .+.++++++|+..-+..+.+.++.+..... .+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 47899999998876666667888889999977765444333322 245899999999999999888876543221 010
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCC--CccEE
Q 022724 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP--DLQVV 210 (293)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~--~~q~v 210 (293)
.....+ ...-.+.++..|.+.|.+. ....=.+.+++|+||+|.+.+ ....+..+...+.. ..+++
T Consensus 138 ~i~~~~----~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r~i 204 (534)
T PHA02533 138 GIVEWN----KGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSKII 204 (534)
T ss_pred ceeecC----ccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCceEE
Confidence 000000 0001123555554444320 111123467899999998643 22333333333322 34566
Q ss_pred EEEeec
Q 022724 211 LISATL 216 (293)
Q Consensus 211 ~~SAt~ 216 (293)
++|++-
T Consensus 205 iiSTp~ 210 (534)
T PHA02533 205 ITSTPN 210 (534)
T ss_pred EEECCC
Confidence 666664
No 215
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.13 E-value=0.0058 Score=55.68 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=24.3
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
+.+++.||+|+|||... -++.+.+.....+.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 46999999999999443 234444444333446776653
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.0076 Score=50.28 Aligned_cols=104 Identities=14% Similarity=0.232 Sum_probs=53.7
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
..+++.|++|+|||.... ++...+... +..++++ +..++...+...+. ..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~--g~~v~~i-t~~~l~~~l~~~~~---~~----------------------- 149 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR--GKSVLII-TVADIMSAMKDTFS---NS----------------------- 149 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc--CCeEEEE-EHHHHHHHHHHHHh---hc-----------------------
Confidence 479999999999995443 344444432 3345554 43344333322110 00
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHH-HHHHHHhhCCC-CccEEEEEeecC
Q 022724 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD-QIYDVYRYLPP-DLQVVLISATLP 217 (293)
Q Consensus 151 ~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~-~~~~i~~~l~~-~~q~v~~SAt~~ 217 (293)
+ .+.+.+.+. +.+.++|||||++......+.. .+..++..... ...++ +|..++
T Consensus 150 --~---~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~ti-itSNl~ 205 (244)
T PRK07952 150 --E---TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTG-MLTNSN 205 (244)
T ss_pred --c---ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEE-EeCCCC
Confidence 0 122233322 4467899999999875443433 34445544332 34444 444443
No 217
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.11 E-value=0.0061 Score=63.64 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhc--cCCCceeEEEEcCCHHHHHHHH
Q 022724 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~--~~~~~~~~lil~P~~~l~~q~~ 118 (293)
.+++.|++++..++.+ +-++|.|..|+|||... -.++..+. ....+.+++.++||-.-+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 5899999999998864 57899999999999553 22323222 1223457888999988776654
No 218
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.10 E-value=0.0027 Score=57.22 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=43.8
Q ss_pred CCCCCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHH
Q 022724 52 GFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVIL 122 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~ 122 (293)
-|...+|-|.+-.-.+. .+.+.++..|+|+|||.+.+-.++......+ ...+.|+-.-|..-++.....++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 45667888877665554 3568999999999999776555554433333 23355555555544444444443
No 219
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.10 E-value=0.0046 Score=55.55 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=22.3
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEE
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil 107 (293)
.+++|.||+|+|||... -.++..+.....+...+++
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEEE
Confidence 57999999999999543 3344444333223345554
No 220
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.10 E-value=0.0021 Score=58.67 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=30.0
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
+.+++.|++|+|||... -++.+.+.....+.+++++.+ .++..++...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 45899999999999332 344455544334556666555 55555554433
No 221
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.09 E-value=0.0045 Score=63.85 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=46.5
Q ss_pred CCcHHHHHHHHhhhc--CCcEEEEcCCCChhHHHH--HHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 022724 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMI--ALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~--~~~~li~~~Tg~GKT~~~--~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 119 (293)
.+++-|++++..++. ++-++|.|..|+|||... ++.++..+.. ..+.+++.++||-.-+..+.+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~L~e 902 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGEMRS 902 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHHHHH
Confidence 589999999999885 477999999999999653 2223333222 234578899999887776643
No 222
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.09 E-value=0.0039 Score=63.91 Aligned_cols=122 Identities=15% Similarity=0.172 Sum_probs=79.3
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc-cCCceEEE
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD-FINIQAHA 134 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~-~~~~~~~~ 134 (293)
.|+-|++++. ..+++++|.|+.|||||.+..--++..+.....-.++++++=|+..+.++.+++.+... ...-
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~---- 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ---- 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc----
Confidence 5889999997 46889999999999999876666666554432224799999999999999998876332 1110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHH-HHhcCCCCC-CCccEEEecchhh
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRT-RAIKLLVLDESDE 186 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~-~l~~~~~~~-~~l~~iViDE~h~ 186 (293)
.....+..+.+..-...-|+|...++. +++.....+ =+..+=|.||...
T Consensus 76 ---~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ---EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ---CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 001111112222234678899999986 555432221 1225566888876
No 223
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.07 E-value=0.0032 Score=60.40 Aligned_cols=70 Identities=23% Similarity=0.242 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
..+++-|++++.. ...+++|.|+.|||||.+..--+...+... ..+.++++++.++..+..+.+++....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4689999998864 345789999999999977554443333322 224589999999999999999887644
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.06 E-value=0.0091 Score=47.53 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=31.7
Q ss_pred EEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
++|.||+|+|||...+-.+...+.. +.+++|+.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999996554444444322 456777754 45567777766655
No 225
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0034 Score=52.79 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=42.5
Q ss_pred CCCCCcHHHHHHHHhhh-------cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 022724 52 GFEKPSAIQQRAVMPII-------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~-------~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (293)
.|......+..++..+. +++++++.||+|+|||..+.. +...+.. .| ..++.+++.+++.++...+.
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~A-i~~~l~~--~g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIA-IGNELLK--AG-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHH-HHHHHHH--cC-CeEEEEEHHHHHHHHHHHHh
Confidence 44445555555554432 578999999999999955442 3333332 23 45666787888887777443
No 226
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.05 E-value=0.021 Score=51.77 Aligned_cols=128 Identities=15% Similarity=0.234 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhh-ccCCCceeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l-~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (293)
++.++++||||+|||....--+.... ... +.++.++. |.+.-+. +.++.+....++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~-------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGAV---EQLKTYAKIMGIPV-------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHHH---HHHHHHHHHhCCce--------------
Confidence 46789999999999965443222222 121 23455444 2333222 22333333333322
Q ss_pred HHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc-ccHHHHHHHHhhC-CCCccEEEEEeecCh-hHHHH
Q 022724 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYL-PPDLQVVLISATLPH-EILEM 223 (293)
Q Consensus 147 ~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l-~~~~q~v~~SAt~~~-~~~~~ 223 (293)
..+.+++.+...+.. +.+.++|+||.+-..... .....+..++... .+....+++|||... ++.+.
T Consensus 282 -------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 282 -------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred -------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 122345555554443 235789999988553221 2233455555522 233457889998864 44555
Q ss_pred HHhc
Q 022724 224 TTKF 227 (293)
Q Consensus 224 ~~~~ 227 (293)
...+
T Consensus 351 ~~~f 354 (424)
T PRK05703 351 YKHF 354 (424)
T ss_pred HHHh
Confidence 4444
No 227
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0067 Score=53.02 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhhhcC-C---cEEEEcCCCChhHHHHH
Q 022724 56 PSAIQQRAVMPIIKG-R---DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~-~---~~li~~~Tg~GKT~~~~ 88 (293)
.+|||...|..+... + -+++.||.|.|||..+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 579999999998743 2 48899999999995543
No 228
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.0032 Score=60.38 Aligned_cols=126 Identities=18% Similarity=0.257 Sum_probs=92.4
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (293)
|..+|. +-.+.-...-+...-||-|||+.+.+|+.-.-.. |..+-++....-|+..-.+.+..+...+|+++...
T Consensus 81 ~~dVQl--iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~ 155 (822)
T COG0653 81 HFDVQL--LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVI 155 (822)
T ss_pred hhhHHH--hhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeec
Confidence 444444 4555555667889999999999999887655444 23477888899999999999999999999999998
Q ss_pred ECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEecchhhhh
Q 022724 136 VGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~------~~~~~~l~~iViDE~h~~~ 188 (293)
..+.+..+....+ .|||.-+|...+ .++++.+ ......+.+-|+||+|.++
T Consensus 156 ~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 156 LAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred cCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 8888766555554 368999997665 2233222 1223568899999999874
No 229
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.02 E-value=0.0028 Score=57.07 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=77.8
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH-HHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhc
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
-.++.|+.|||||.+...-++..+...+.+.+++++-|+.. +-..+...+.......++....-....+. .+ .+.+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~~~~ 79 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-KILN 79 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-EecC
Confidence 36788999999999888877777666423468899989865 77777887776655555432111111100 00 0112
Q ss_pred -CCcEEEeCh-HHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC--CCccEEEEEeecCh
Q 022724 151 -GVHVVSGTP-GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDLQVVLISATLPH 218 (293)
Q Consensus 151 -~~~ilV~Tp-~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~--~~~q~v~~SAt~~~ 218 (293)
+..|++..- +.... ++ ....++++.+||+..+... .+..++.+++ .....+++|.++..
T Consensus 80 ~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred CCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 334555443 22211 11 1233689999999988433 3444444443 22224778888754
No 230
>PRK06893 DNA replication initiation factor; Validated
Probab=96.99 E-value=0.0027 Score=52.60 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=29.0
Q ss_pred CCccEEEecchhhhhcc-ccHHHHHHHHhhCC-CCccEEEEEeecChh
Q 022724 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHE 219 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~-~~~q~v~~SAt~~~~ 219 (293)
.+.+++|+||+|.+... .+...+..++..+. ...+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 45689999999987533 33334445454443 345677888876544
No 231
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.99 E-value=0.0054 Score=50.51 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChhHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~ 88 (293)
.+.++++.||+|+|||....
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999995543
No 232
>PRK08116 hypothetical protein; Validated
Probab=96.98 E-value=0.013 Score=49.83 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=26.3
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 119 (293)
.+++.|++|+|||..+. ++.+.+... +..++ ..+..++...+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~--~~~v~-~~~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK--GVPVI-FVNFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc--CCeEE-EEEHHHHHHHHHH
Confidence 49999999999995433 455555443 33344 4444555544433
No 233
>PRK08727 hypothetical protein; Validated
Probab=96.98 E-value=0.0047 Score=51.33 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=21.4
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
+.+++.||+|+|||.... ++.+.+... +.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~--~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQA--GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--CCcEEEEe
Confidence 459999999999994322 333333332 34566654
No 234
>PRK12377 putative replication protein; Provisional
Probab=96.97 E-value=0.013 Score=48.95 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 119 (293)
..++++.||+|+|||.... ++...+... +..+ +.++..++..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~~--g~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLAK--GRSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCe-EEEEHHHHHHHHHH
Confidence 3689999999999994332 334444432 3334 44455566665544
No 235
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.97 E-value=0.011 Score=50.11 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 579999999999996543
No 236
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.97 E-value=0.0099 Score=56.78 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHhhhcC-----CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 55 KPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~-----~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
.|+-.|..++..+.++ ++.++.|-||||||+...- ++..+ +..+||++|++.+|.|+++.++.+...
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-----~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-----NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 4888999999887643 3667999999999976442 33322 225899999999999999999988754
No 237
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.96 E-value=0.0057 Score=58.92 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=53.7
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
+++-|++++.. .+.+++|.|+.|||||.+..--+.+.+... ....++++++.|+..+.++.+++.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889998865 356899999999999987666666666432 2335789999999999999999987543
No 238
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.96 E-value=0.0039 Score=54.13 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=42.1
Q ss_pred HHHHCCCCCCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 47 GIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
.+.+.|. .++.|...+.. +..+++++|+|+||||||. ++-+++..+...+.+.+++.+=...||
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCCCCceEEEecCCccc
Confidence 3444443 56677766655 4567899999999999994 344555655433334577777767776
No 239
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.95 E-value=0.0039 Score=53.03 Aligned_cols=132 Identities=14% Similarity=0.231 Sum_probs=65.9
Q ss_pred CcHHHHHHHHhhh---cC------CcEEEEcCCCChhHHHHHHHHHhhhcc-CC---CceeEEEEcCCHHHHHHHHHHHH
Q 022724 56 PSAIQQRAVMPII---KG------RDVIAQAQSGTGKTSMIALTVCQTVDT-SS---REVQALILSPTRELATQTEKVIL 122 (293)
Q Consensus 56 ~~~~Q~~~~~~i~---~~------~~~li~~~Tg~GKT~~~~~~~~~~l~~-~~---~~~~~lil~P~~~l~~q~~~~~~ 122 (293)
.+|.=.+++..+. .. .+++++|+|+.|||...--..-.+-.. .. .-|-+.+-+|...-....+..+-
T Consensus 38 gY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 38 GYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred cCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 4555555555443 21 489999999999996432111111000 00 12445666677666666555443
Q ss_pred HhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc--HHHHHHHH
Q 022724 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVY 200 (293)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~--~~~~~~i~ 200 (293)
. .++..... ..... .. -....++++ .-.++++||||+|.++.... ...+..++
T Consensus 118 ~---~lgaP~~~---~~~~~-~~-------------~~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L 172 (302)
T PF05621_consen 118 E---ALGAPYRP---RDRVA-KL-------------EQQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNAL 172 (302)
T ss_pred H---HhCcccCC---CCCHH-HH-------------HHHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHH
Confidence 2 22211100 00000 00 011223333 34568999999999876543 34455566
Q ss_pred hhCCCC--ccEEEE
Q 022724 201 RYLPPD--LQVVLI 212 (293)
Q Consensus 201 ~~l~~~--~q~v~~ 212 (293)
+.+.+. ..+|++
T Consensus 173 K~L~NeL~ipiV~v 186 (302)
T PF05621_consen 173 KFLGNELQIPIVGV 186 (302)
T ss_pred HHHhhccCCCeEEe
Confidence 666654 445544
No 240
>CHL00181 cbbX CbbX; Provisional
Probab=96.95 E-value=0.017 Score=49.58 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~ 88 (293)
|.++++.||+|+|||..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999996654
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.92 E-value=0.012 Score=51.35 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
.++++++.||||+|||.... ++...+... +..+++ .+..++..++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~--g~~V~y-~t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR--GKSVIY-RTADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC--CCeEEE-EEHHHHHHHHH
Confidence 35799999999999995433 344444332 334554 44455554443
No 242
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.91 E-value=0.0038 Score=60.69 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
..+++-|.+++... ..+++|.|+.|||||.+..--+.+.+.... ...++++++-|+..+.++.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 35899999998753 578999999999999776655555554322 22479999999999999999988764
No 243
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.91 E-value=0.0011 Score=52.29 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=51.0
Q ss_pred EEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCc
Q 022724 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVH 153 (293)
Q Consensus 74 li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (293)
++.|+-|-|||.+.-+.+...+... ..+++|.+|+.+-+..+.+.+..-.+..+++....... ........++..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccccce
Confidence 5789999999954433332222222 25799999999999998887665444443332000000 000001112345
Q ss_pred EEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecC
Q 022724 154 VVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (293)
Q Consensus 154 ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~ 217 (293)
|-...|+.+... ....+++|||||=.+. ...+..+++ ....+++|.|+.
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~----~~~~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLR----RFPRVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEBS
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHh----hCCEEEEEeecc
Confidence 666666544432 1234899999997652 233444433 334677788874
No 244
>PF13173 AAA_14: AAA domain
Probab=96.89 E-value=0.024 Score=42.27 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=25.7
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEee
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt 215 (293)
.-.++++||+|.+. .+...+..+...- ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 45789999999984 4566666666654 45666655443
No 245
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.85 E-value=0.0045 Score=51.49 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
+.++++.||+|+|||.... ++.+.+... +.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~-a~~~~~~~~--~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH-AACAELSQR--GRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHhC--CCeEEEEEH
Confidence 3689999999999994433 233333322 345555533
No 246
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.85 E-value=0.0066 Score=52.37 Aligned_cols=66 Identities=21% Similarity=0.395 Sum_probs=42.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 45 LRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
++.+.+.|. +++.|...+.. +..+++++|+|+||||||. ++-+++..+.......+++.+-...|+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhccCCCceEEEECCchhh
Confidence 444444443 44555555554 5567899999999999994 344555665543334477777777776
No 247
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.84 E-value=0.0091 Score=50.72 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=65.5
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 022724 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (293)
Q Consensus 43 ~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (293)
++.++|..-+..+..+---+.+.-+..|..+++.|++|+|||....-.+.+.... .+..++|+.-- .-..++..++.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcc-cCHHHHHHHHH
Confidence 3445555333333222222233345567889999999999995433333332222 14467777642 23445555444
Q ss_pred HhhccCCceEEEEECCcchHHH---HHHHhcCCcEE-Ee-----ChHHHHHHHhcCCCCCCCccEEEecchhhhhc
Q 022724 123 AIGDFINIQAHACVGGKSVGED---IRKLEHGVHVV-SG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~il-V~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
.......+.............. ...+.....+. +- +++.+...++.-. .-..+++||||.++.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 80 GQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhc
Confidence 3322222211100001111111 11222112222 21 4555555444311 123578999999998854
No 248
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.83 E-value=0.0055 Score=55.24 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=26.5
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHH
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~ 88 (293)
+.......+..+..++++++.||+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 455566677778889999999999999996553
No 249
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.016 Score=54.66 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++||||+|++....+ ..+...+..-+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 4568999999998854432 33444455444455566544
No 250
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.81 E-value=0.0053 Score=53.35 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=43.5
Q ss_pred HHHHHHCCCCCCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 45 LRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
++.+.+.|. +++.|.+.+.. +..+++++++|+|||||| .++-+++..+...+...+++++-.+.|+
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 344445554 55677777765 456789999999999999 4445555554322334477777777765
No 251
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.79 E-value=0.013 Score=53.35 Aligned_cols=108 Identities=15% Similarity=0.314 Sum_probs=55.7
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
+.+++.||+|+|||.... ++...+... +.+++++.. ..+..+....++.
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~-~~f~~~~~~~l~~--------------------------- 190 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS-ELFTEHLVSAIRS--------------------------- 190 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH-HHHHHHHHHHHhc---------------------------
Confidence 468999999999994322 444444332 446666653 3443333222210
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc-cHHHHHHHHhhC-CCCccEEEEEeecChhHHH
Q 022724 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYL-PPDLQVVLISATLPHEILE 222 (293)
Q Consensus 151 ~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~-~~~~~~~i~~~l-~~~~q~v~~SAt~~~~~~~ 222 (293)
...+.+... ..+.++++|||+|.+.... ....+..++..+ ....++|+.|-..|..+..
T Consensus 191 ------~~~~~f~~~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 191 ------GEMQRFRQF-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ------chHHHHHHH-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 011111111 2457899999999985432 233333443322 2345555555444554443
No 252
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.01 Score=51.85 Aligned_cols=56 Identities=27% Similarity=0.501 Sum_probs=36.6
Q ss_pred cccCcccCCCCHHHHHHHHHC--------------CCCCCcHHHHHH------HHhhhcC-----CcEEEEcCCCChhHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQY--------------GFEKPSAIQQRA------VMPIIKG-----RDVIAQAQSGTGKTS 85 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~--------------~~~~~~~~Q~~~------~~~i~~~-----~~~li~~~Tg~GKT~ 85 (293)
....|+.++....+.+.|+.- |....-..=++| +|.+++| +.+++.||.|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 356788888898898888651 111112222222 2455565 689999999999995
Q ss_pred H
Q 022724 86 M 86 (293)
Q Consensus 86 ~ 86 (293)
.
T Consensus 261 L 261 (491)
T KOG0738|consen 261 L 261 (491)
T ss_pred H
Confidence 3
No 253
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.77 E-value=0.023 Score=49.84 Aligned_cols=40 Identities=8% Similarity=0.223 Sum_probs=25.4
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
....+||+||+|.+.+. ....+..++...+...++|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45679999999987432 23445555555555666665443
No 254
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.0063 Score=55.42 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.4
Q ss_pred EEEEcCCCChhHHHHHH
Q 022724 73 VIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~~~ 89 (293)
++++||.|+|||.++.+
T Consensus 43 ~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 43 YIFFGPRGVGKTTIARI 59 (484)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 79999999999966543
No 255
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.74 E-value=0.037 Score=40.98 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=13.6
Q ss_pred CccEEEecchhhhhccc
Q 022724 175 AIKLLVLDESDEMLSRG 191 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~ 191 (293)
...+++|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35899999999986554
No 256
>PLN03025 replication factor C subunit; Provisional
Probab=96.74 E-value=0.024 Score=49.48 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
...+++|+||+|.+.... ...+...+...+....+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 347899999999985433 344445555545555555543
No 257
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.05 Score=49.91 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCChhHHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALT 90 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~ 90 (293)
|+-+.++||||+|||.....-
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKL 276 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKL 276 (484)
T ss_pred CcEEEEECCCCccHHHHHHHH
Confidence 456889999999999765433
No 258
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.016 Score=54.38 Aligned_cols=107 Identities=16% Similarity=0.231 Sum_probs=55.9
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
+.+++.|++|+|||.. +-++.+.+.....+.+++|+. ..+++.+....+.. .
T Consensus 315 NpL~LyG~sGsGKTHL-L~AIa~~a~~~~~g~~V~Yit-aeef~~el~~al~~---~----------------------- 366 (617)
T PRK14086 315 NPLFIYGESGLGKTHL-LHAIGHYARRLYPGTRVRYVS-SEEFTNEFINSIRD---G----------------------- 366 (617)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEee-HHHHHHHHHHHHHh---c-----------------------
Confidence 3489999999999943 223444444333344555554 45555444332211 0
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc-cHHHHHHHHhhCC-CCccEEEEEeecChh
Q 022724 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLP-PDLQVVLISATLPHE 219 (293)
Q Consensus 151 ~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~-~~~~~~~i~~~l~-~~~q~v~~SAt~~~~ 219 (293)
..+.+... +.++++|||||+|.+.... ....+..++..+. .+.++|+.|-..+..
T Consensus 367 -------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 367 -------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred -------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 01111111 3457899999999885432 2333444444443 345666544444443
No 259
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.013 Score=57.16 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=22.8
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
.+.+++||||+|+|.... ...+...+..-+..+.+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 457899999999985332 23333344443445556654
No 260
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.023 Score=45.07 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=61.1
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (293)
|+-.+++||..||||...+-.+- +.... +.++++..|-.. ...+........|.+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~-~~~~~--g~~v~vfkp~iD-------------~R~~~~~V~Sr~G~~~-------- 59 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRAR-RYKEA--GMKVLVFKPAID-------------TRYGVGKVSSRIGLSS-------- 59 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHH-HHHHc--CCeEEEEecccc-------------cccccceeeeccCCcc--------
Confidence 44578999999999975443332 22222 457888888332 2333333333333322
Q ss_pred cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 150 ~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
.-+.|-.+..+...+.....+.. ++.|.|||++.+ +......+..+...+
T Consensus 60 --~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 60 --EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred --cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 24566666677766655333222 789999999876 334455555555554
No 261
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.68 E-value=0.019 Score=52.59 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=85.5
Q ss_pred CCcHHHHHHHHhhhc------C----CcEEEEcCCCChhHHHHH-HHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 55 KPSAIQQRAVMPIIK------G----RDVIAQAQSGTGKTSMIA-LTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~------~----~~~li~~~Tg~GKT~~~~-~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
..-|||+-++-.+.. | +-.+|..|-+-|||.... +.....+.....+....|++|+.+-+.+..+.++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 468999999998871 1 357888999999994433 33333343345566889999999999998888876
Q ss_pred hhccCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhc--CCCCCCCccEEEecchhhhhccccHHHHHHHH
Q 022724 124 IGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (293)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~--~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~ 200 (293)
...... +.... ..+. +...|...--......+.. +..+=.+..+.|+||.|.+.+.+ ..+..+.
T Consensus 141 mv~~~~----------~l~~~-~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~ 207 (546)
T COG4626 141 MVKRDD----------DLRDL-CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAK 207 (546)
T ss_pred HHHhCc----------chhhh-hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHH
Confidence 543221 00000 0000 0111222111112222222 33444667899999999986553 4444444
Q ss_pred hhCC--CCccEEEEEe
Q 022724 201 RYLP--PDLQVVLISA 214 (293)
Q Consensus 201 ~~l~--~~~q~v~~SA 214 (293)
.-+. ++.++++.|.
T Consensus 208 ~g~~ar~~~l~~~ITT 223 (546)
T COG4626 208 GGLGARPEGLVVYITT 223 (546)
T ss_pred hhhccCcCceEEEEec
Confidence 4443 4667777776
No 262
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.67 E-value=0.014 Score=45.48 Aligned_cols=43 Identities=16% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~ 217 (293)
...+++||||+|.|.... ...+...+..-+....++++|....
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChH
Confidence 568999999999985443 4445556666666777777766543
No 263
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.67 E-value=0.024 Score=54.23 Aligned_cols=157 Identities=16% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCC--cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~--~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~ 117 (293)
.++..-..+.....+.+..-|.+.+..+.+.+ -+++.|.-|=|||.+.=+++ ..+.......+++|.+|+.+-++.+
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~~~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLAGSVRIIVTAPTPANVQTL 277 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhcCCceEEEeCCCHHHHHHH
Confidence 33333444555555566666666777777543 58889999999996544333 2221111145899999999999999
Q ss_pred HHHHHHhhccCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHH
Q 022724 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 196 (293)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~ 196 (293)
...+.+-....|++-......... .... .+...|=.-.|.... ..-+++|||||=.+. ...+
T Consensus 278 f~fa~~~l~~lg~~~~v~~d~~g~---~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL 340 (758)
T COG1444 278 FEFAGKGLEFLGYKRKVAPDALGE---IREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLL 340 (758)
T ss_pred HHHHHHhHHHhCCccccccccccc---eeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHH
Confidence 888876555555432221111000 0000 011123333443222 115899999996652 3344
Q ss_pred HHHHhhCCCCccEEEEEeecCh
Q 022724 197 YDVYRYLPPDLQVVLISATLPH 218 (293)
Q Consensus 197 ~~i~~~l~~~~q~v~~SAt~~~ 218 (293)
..++.. .+.++||.|+..
T Consensus 341 ~~l~~~----~~rv~~sTTIhG 358 (758)
T COG1444 341 HKLLRR----FPRVLFSTTIHG 358 (758)
T ss_pred HHHHhh----cCceEEEeeecc
Confidence 444443 357889999853
No 264
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.66 E-value=0.016 Score=62.00 Aligned_cols=63 Identities=32% Similarity=0.420 Sum_probs=45.5
Q ss_pred CCCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHH---HHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 54 EKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIA---LTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~---~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
..+++.|++++..++.+ +-++|.|+.|+|||...- -++...+.. .+.+++.++||..-+..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHH
Confidence 35899999999998754 567889999999995541 123233322 2567899999988776664
No 265
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.65 E-value=0.015 Score=49.79 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+.++++.||+|+|||..+
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999665
No 266
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.02 Score=52.12 Aligned_cols=61 Identities=11% Similarity=0.301 Sum_probs=38.8
Q ss_pred CCCCCccEEEecchhhhhcc--------c-cHHHHHHHHhhCC-----CCccEEEEEeecChhHHHHHHhcCCCCEEEEe
Q 022724 171 LRTRAIKLLVLDESDEMLSR--------G-FKDQIYDVYRYLP-----PDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (293)
Q Consensus 171 ~~~~~l~~iViDE~h~~~~~--------~-~~~~~~~i~~~l~-----~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~ 236 (293)
..-+.+..||+||+|.+... + .-..++.+++++. ++.-+|+||-- .+++...+..|..+.+
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR-----~DlIDEALLRPGRlEV 394 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR-----KDLIDEALLRPGRLEV 394 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc-----hhhHHHHhcCCCceEE
Confidence 34577899999999998632 1 2345667777764 35566777543 5566666656655544
No 267
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.64 E-value=0.059 Score=50.98 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=82.9
Q ss_pred CCcHHHHHHHHhhh---cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc-
Q 022724 55 KPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI- 130 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~---~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~- 130 (293)
.|+|.=.+-++++. +.+-.++.+|=|.|||++..+.+...+.. .+.++++.+|...-+.++.+.++......+.
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 45555555556554 56788999999999998766555443332 2568999999999999998888776553321
Q ss_pred -------eEEEEECCcchHHHHHHHhcCCcEEEeChHHHH----H--HH--hcCCCCCCCccEEEecchhhhhccccHHH
Q 022724 131 -------QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC----D--MI--KRKTLRTRAIKLLVLDESDEMLSRGFKDQ 195 (293)
Q Consensus 131 -------~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~----~--~l--~~~~~~~~~l~~iViDE~h~~~~~~~~~~ 195 (293)
.+....|+. -.|.+..|.... . +. ..+...-...+++|+|||..+... .
T Consensus 247 ~~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~----~ 310 (752)
T PHA03333 247 PWFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPG----A 310 (752)
T ss_pred cccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHH----H
Confidence 111111111 012222211110 0 00 011122235689999999987543 3
Q ss_pred HHHHHhhCC-CCccEEEEEeec
Q 022724 196 IYDVYRYLP-PDLQVVLISATL 216 (293)
Q Consensus 196 ~~~i~~~l~-~~~q~v~~SAt~ 216 (293)
+..++-.+. ...+++++|.+-
T Consensus 311 l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 311 LLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHHccCCCceEEEeCCC
Confidence 444444443 467778888775
No 268
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.63 E-value=0.014 Score=48.11 Aligned_cols=43 Identities=9% Similarity=0.261 Sum_probs=25.2
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCCCCcc-EEEEEeecCh
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ-VVLISATLPH 218 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q-~v~~SAt~~~ 218 (293)
..+++||||+|.+... ....+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4578999999987432 23334444444333333 5677777554
No 269
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.045 Score=52.79 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=63.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC--HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT--RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
+-+.++||||+|||.....-+........ +.++.++.-. +.=+ .+.++.+....++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv---------------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFRIGA---LEQLRIYGRILGVPV---------------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccchHH---HHHHHHHHHhCCCCc----------------
Confidence 45789999999999665433322212221 1244444432 2212 223333333333322
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc-ccHHHHHHHHhhCCCCccEEEEEeecCh-hHHHHHHh
Q 022724 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTTK 226 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~~~~q~v~~SAt~~~-~~~~~~~~ 226 (293)
..+.+|+.+...+.. +.+.++|+||=+=+.... .....+..+.....+...++.++||... .+.+....
T Consensus 246 -----~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~ 316 (767)
T PRK14723 246 -----HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHA 316 (767)
T ss_pred -----cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHH
Confidence 223466666555543 334578888877654222 2233333344334445567888888743 34444444
Q ss_pred c
Q 022724 227 F 227 (293)
Q Consensus 227 ~ 227 (293)
|
T Consensus 317 f 317 (767)
T PRK14723 317 Y 317 (767)
T ss_pred H
Confidence 4
No 270
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.61 E-value=0.012 Score=57.30 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=70.6
Q ss_pred CcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecCh------hHHHHHH
Q 022724 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH------EILEMTT 225 (293)
Q Consensus 152 ~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~------~~~~~~~ 225 (293)
..|++.||..+..-+-.+.+++..+..|||||||++.+..-...+..+.+.-++..-+.+|||.+.. .+...++
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 4799999999998888888999999999999999998777777788888887788889999999864 4566666
Q ss_pred hcCCCCEEEEecC
Q 022724 226 KFMTDPVKILVKR 238 (293)
Q Consensus 226 ~~~~~~~~~~~~~ 238 (293)
.++-.-..+....
T Consensus 88 ~L~i~~v~l~prf 100 (814)
T TIGR00596 88 NLFLRHVYLWPRF 100 (814)
T ss_pred HhCcCeEEEeCCC
Confidence 6665555555443
No 271
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.61 E-value=0.014 Score=48.63 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=36.0
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
.|..++|.||+|+|||...+-.+...+.. +-+++|++ +.+-..++.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 35689999999999997655555555533 44677777 4455667777666543
No 272
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.60 E-value=0.023 Score=53.43 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=81.1
Q ss_pred hcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccC-Cce-EEEEECCcchHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI-NIQ-AHACVGGKSVGEDI 145 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 145 (293)
.+.+-.++..|=-.|||+... +++..+...-.|.++++.+|.+..++.+++.+....... .-. +....| ... .
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~ 326 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---S 326 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---E
Confidence 345788999999999998766 666655544447799999999999999998887654321 111 111111 100 0
Q ss_pred HHHhcC--CcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC-CCccEEEEEeecCh
Q 022724 146 RKLEHG--VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPH 218 (293)
Q Consensus 146 ~~~~~~--~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~-~~~q~v~~SAt~~~ 218 (293)
-...++ ..|.+.+- -..+...=..++++|||||+.+-+..+.. ++-.+. .+.++|++|.|-+.
T Consensus 327 i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~----ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 327 FSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQT----IMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred EEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHH----HHHHHhccCccEEEEecCCCC
Confidence 001112 13444321 01122333478999999999886544333 333322 47899999988543
No 273
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.026 Score=50.87 Aligned_cols=130 Identities=15% Similarity=0.188 Sum_probs=60.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC-HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
|.-+.++||||+|||.....-+-..+.......-.++...+ +.-+.++ +..+....|+.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQ---L~~~a~ilGvp~~~-------------- 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQ---LRIYGKLLGVSVRS-------------- 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHH---HHHHHHHcCCceec--------------
Confidence 45689999999999966543222222221111234555544 2222222 33333333443322
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc-ccHHHHHHHHhhCCCCccEEEEEeecC-hhHHHHHHh
Q 022724 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMTTK 226 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~~~~q~v~~SAt~~-~~~~~~~~~ 226 (293)
+.++..+...+. .+.+.+.+.||.+-+.... .....+..+.....+...++.+|||.. ..+.+....
T Consensus 254 -------v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 254 -------IKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred -------CCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 223333332222 1445677888875322111 112233333222223345778999974 445555554
Q ss_pred c
Q 022724 227 F 227 (293)
Q Consensus 227 ~ 227 (293)
+
T Consensus 323 f 323 (420)
T PRK14721 323 Y 323 (420)
T ss_pred h
Confidence 4
No 274
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.014 Score=55.93 Aligned_cols=40 Identities=18% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
.+.+++||||+|+|....+.. +.+.+..-+....+|+.+-
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCeEEEEEEC
Confidence 457899999999986544333 3334444444555655543
No 275
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.021 Score=53.05 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=25.0
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++||||+|++....+. .+...+..-+..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~n-aLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFN-ALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHH-HHHHHHhccCCCeEEEEEE
Confidence 45789999999998654432 3334445545566666654
No 276
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.55 E-value=0.038 Score=50.12 Aligned_cols=128 Identities=12% Similarity=0.208 Sum_probs=61.0
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC--CHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
..++++|++|+|||....-.+ ..+... +.+++++.. .+.-+ .++++.+....++.+.......
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA-~~L~~~--g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~--------- 160 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA-RYFKKK--GLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNK--------- 160 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHHc--CCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCcc---------
Confidence 358899999999996654333 233332 335555553 23322 2333334434444432211111
Q ss_pred hcCCcEEEeChHH-HHHHHhcCCCCCCCccEEEecchhhhh-ccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHh
Q 022724 149 EHGVHVVSGTPGR-VCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (293)
Q Consensus 149 ~~~~~ilV~Tp~~-l~~~l~~~~~~~~~l~~iViDE~h~~~-~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~ 226 (293)
.|.. +...+.. +...++||||.+-... +......+..+.....+..-++.++|+...+..+.+..
T Consensus 161 ---------d~~~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 161 ---------DAVEIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred ---------CHHHHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 1111 1122221 1112678888774332 22233445555555555556667777766554444444
No 277
>PRK05973 replicative DNA helicase; Provisional
Probab=96.55 E-value=0.031 Score=46.33 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHCCCC----------CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEE
Q 022724 38 MGIKDDLLRGIYQYGFE----------KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (293)
Q Consensus 38 ~~l~~~i~~~l~~~~~~----------~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil 107 (293)
.++++.+-+...+-||. .++|.. +...-+..|.-++|.|++|+|||...+-.+.+.... |.+++|+
T Consensus 23 ~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyf 98 (237)
T PRK05973 23 IPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFF 98 (237)
T ss_pred CcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEE
Confidence 34444444444445655 345522 233445567789999999999996555444444432 4467777
Q ss_pred cCCHHHHHHHHHHHHHh
Q 022724 108 SPTRELATQTEKVILAI 124 (293)
Q Consensus 108 ~P~~~l~~q~~~~~~~~ 124 (293)
+-- +-..|+.+++..+
T Consensus 99 SlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 99 TLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEe-CCHHHHHHHHHHc
Confidence 543 3356777777665
No 278
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.54 E-value=0.046 Score=48.01 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=34.7
Q ss_pred hhhHHhCCCCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCC
Q 022724 5 TAMRRRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEK 55 (293)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~ 55 (293)
+++...........+....+....+.++......++++...+.|++.||.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~t 54 (344)
T PLN03187 4 SAQADEGAQLQLVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYT 54 (344)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccCHHHHhhCCCCHHHHHHHHHcCCCc
Confidence 334444444555555555555556777777778889999999998888873
No 279
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.014 Score=53.51 Aligned_cols=40 Identities=15% Similarity=0.398 Sum_probs=23.2
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
..+.+++||||+|++....+ ..+...+..-++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEe
Confidence 35778999999999854332 22333333333445555544
No 280
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.54 E-value=0.021 Score=49.69 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=26.0
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
..+++||||+|.+........+..++...+..+++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457999999998833333455666666666666666644
No 281
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.016 Score=56.67 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=25.8
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++||||+|+|.... ...+..++...+..+.+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999996443 333445555555566666655
No 282
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.50 E-value=0.0098 Score=55.82 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH-HHHHHh
Q 022724 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-KVILAI 124 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~-~~~~~~ 124 (293)
..+|+|.+..+.+... +.++++.++-+|||.+.+-.+...+...+. .++++.||.+.+.... +++..+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~--~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG--PMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC--CEEEEEEcHHHHHHHHHHHHHHH
Confidence 5789999999998865 589999999999998766666566666543 5899999999999876 555443
No 283
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.47 E-value=0.045 Score=45.36 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=32.9
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
+..|.-+++.|++|+|||...+-.+...+.. +.++++++. .+-..+..+.+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeC-CCCHHHHHHHHHHh
Confidence 3456789999999999996543333333222 456788874 33345555555443
No 284
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.035 Score=48.34 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=23.8
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
....+++||||||.|... -...+...+..-+.+..+++.+
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 367899999999998643 2333333444334445555444
No 285
>PF05729 NACHT: NACHT domain
Probab=96.44 E-value=0.021 Score=44.16 Aligned_cols=38 Identities=29% Similarity=0.548 Sum_probs=23.6
Q ss_pred EEEecchhhhhccc-------cHHHHHHHHhh-CCCCccEEEEEee
Q 022724 178 LLVLDESDEMLSRG-------FKDQIYDVYRY-LPPDLQVVLISAT 215 (293)
Q Consensus 178 ~iViDE~h~~~~~~-------~~~~~~~i~~~-l~~~~q~v~~SAt 215 (293)
+||+|-+|.+.+.. ....+..++.. +.++.++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999986532 22344455555 4456777666554
No 286
>PTZ00293 thymidine kinase; Provisional
Probab=96.44 E-value=0.029 Score=45.47 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=25.7
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
|.-.++.||.++|||.-.+-. +...... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~-i~~y~~a--g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRL-VKRFTYS--EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHH-HHHHHHc--CCceEEEEecc
Confidence 556788999999999544433 3333332 44688888844
No 287
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.43 E-value=0.072 Score=42.54 Aligned_cols=40 Identities=13% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.....++||||+|.+.... ...+...+..-++..-+|+.+
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 3567899999999985432 233444444434444555543
No 288
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.42 E-value=0.098 Score=44.35 Aligned_cols=129 Identities=13% Similarity=0.243 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC--CH-HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TR-ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P--~~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (293)
+..+.++|++|+|||..+...+.. +... +.++.++.- .+ ..+.|+.... ...++.+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~-l~~~--~~~v~~i~~D~~ri~~~~ql~~~~----~~~~~~~~------------- 134 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ-FHGK--KKTVGFITTDHSRIGTVQQLQDYV----KTIGFEVI------------- 134 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH-HHHc--CCeEEEEecCCCCHHHHHHHHHHh----hhcCceEE-------------
Confidence 357899999999999765533322 2221 234444443 22 4444444322 22232221
Q ss_pred HHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc-cccHHHHHHHHhhCCCCccEEEEEeecC-hhHHHHH
Q 022724 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMT 224 (293)
Q Consensus 147 ~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~-~~~~~~~ 224 (293)
...+|+.+...+..- -...+.++++||.+=.... ......+..+++...+..-++.+|||.. .++.+.+
T Consensus 135 --------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 135 --------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred --------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 113455554444321 1123578999998865432 1223344445554444445777999874 4666666
Q ss_pred Hhc
Q 022724 225 TKF 227 (293)
Q Consensus 225 ~~~ 227 (293)
+.+
T Consensus 206 ~~f 208 (270)
T PRK06731 206 TNF 208 (270)
T ss_pred HHh
Confidence 654
No 289
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.42 E-value=0.056 Score=46.99 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=28.4
Q ss_pred CCCCcHHHHHHHHhhh----cCC---cEEEEcCCCChhHHHHH
Q 022724 53 FEKPSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 53 ~~~~~~~Q~~~~~~i~----~~~---~~li~~~Tg~GKT~~~~ 88 (293)
+..++|||..+|..+. +|+ -+++.||.|.||+..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 4568999999998876 344 48999999999995543
No 290
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.40 E-value=0.029 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=17.5
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhh
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l 95 (293)
.+++|.||+|+|||... -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 58999999999999543 3344444
No 291
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.36 E-value=0.043 Score=52.69 Aligned_cols=67 Identities=24% Similarity=0.312 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHhhhcC-----CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 55 KPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~-----~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
.|+..|..++..+.++ +..++.|.+|+|||+.+. .++... +..+|||+|+...+.++++.++.+...
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----CCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 5999999999987632 257799999999997643 232222 236999999999999999999888643
No 292
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.041 Score=51.96 Aligned_cols=41 Identities=15% Similarity=0.353 Sum_probs=24.6
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEee
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt 215 (293)
.+.+++||||+|+|....+.. +.+.+..-+..+.+|+.|..
T Consensus 123 gr~KViIIDEah~Ls~~AaNA-LLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNA-MLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHHHHH-HHHhhccCCCCceEEEEeCC
Confidence 467899999999986543322 22233333445666666543
No 293
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.33 E-value=0.037 Score=53.67 Aligned_cols=144 Identities=14% Similarity=0.124 Sum_probs=74.3
Q ss_pred cEEEEcCCCChhHHHH---HHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccC----CceEEEEECCcchHHH
Q 022724 72 DVIAQAQSGTGKTSMI---ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI----NIQAHACVGGKSVGED 144 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~---~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 144 (293)
..|+.--.|-|||+-. +..++..... .-.++||+||... +..+.+.|.+|...+ .+.|..+..-......
T Consensus 698 GcILAHcMGLGKTlQVvtflhTvL~c~kl--g~ktaLvV~PlNt-~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R 774 (1567)
T KOG1015|consen 698 GCILAHCMGLGKTLQVVTFLHTVLLCDKL--GFKTALVVCPLNT-ALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEER 774 (1567)
T ss_pred chHHHHhhcccceehhhHHHHHHHHhhcc--CCceEEEEcchHH-HHHHHHHHHHhcccccccccceeehhhhccChHHH
Confidence 4555556799999643 3333322221 1248999999665 456677777776542 3445444333322222
Q ss_pred ---HHHHhcCCcEEEeChHHHHHHHhcC-------------CCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCcc
Q 022724 145 ---IRKLEHGVHVVSGTPGRVCDMIKRK-------------TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (293)
Q Consensus 145 ---~~~~~~~~~ilV~Tp~~l~~~l~~~-------------~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q 208 (293)
...|.+.-.|.|.-.+.+-.+-... .+.-...+++|.||+|.+-.. ...+...+..+... +
T Consensus 775 ~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irtk-R 851 (1567)
T KOG1015|consen 775 SYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRTK-R 851 (1567)
T ss_pred HHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHhh-e
Confidence 2334443355555444443322111 111245699999999987432 23333333344333 3
Q ss_pred EEEEEeec-ChhHH
Q 022724 209 VVLISATL-PHEIL 221 (293)
Q Consensus 209 ~v~~SAt~-~~~~~ 221 (293)
.|++|.|+ -+.+.
T Consensus 852 RI~LTGTPLQNNLm 865 (1567)
T KOG1015|consen 852 RIILTGTPLQNNLM 865 (1567)
T ss_pred eEEeecCchhhhhH
Confidence 45566664 44433
No 294
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.33 E-value=0.02 Score=56.90 Aligned_cols=143 Identities=15% Similarity=0.022 Sum_probs=84.2
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhcc-----------C----CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT-----------S----SREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~-----------~----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
|+.++..-..|+|||.+-+...+...-. . ...+-+||+|| .++..|+.+.+.+-... ++++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~-~lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISS-LLKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhccc-cceEEE
Confidence 4566777788999998766554433211 0 11235899999 46678988888764433 377877
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC--CC----------------CCCccE--EEecchhhhhccccHH
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LR----------------TRAIKL--LVLDESDEMLSRGFKD 194 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~--~~----------------~~~l~~--iViDE~h~~~~~~~~~ 194 (293)
+.|-....-......-.+||++||...|-.-+.... .+ +-.+.+ |++|||+++-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 776533221111222357999999988876443221 00 111122 89999998744 334
Q ss_pred HHHHHHhhCCCCccEEEEEeecC
Q 022724 195 QIYDVYRYLPPDLQVVLISATLP 217 (293)
Q Consensus 195 ~~~~i~~~l~~~~q~v~~SAt~~ 217 (293)
.......+++ ....-.+|+|+-
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPi 551 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPI 551 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCch
Confidence 4444555553 344567778853
No 295
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.15 Score=45.28 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=18.7
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccC
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS 98 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~ 98 (293)
.|+++.|+||+|||...- -++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHhh
Confidence 379999999999996543 344444443
No 296
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.031 Score=53.20 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=24.2
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++||||+|.+....+ ..+...+..-+..+.+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998754332 23444444444566666655
No 297
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.31 E-value=0.097 Score=51.13 Aligned_cols=38 Identities=21% Similarity=0.585 Sum_probs=21.6
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCC-CCccEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLI 212 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~-~~~q~v~~ 212 (293)
....+||+||+|.+.... ...+..+++... ...+++++
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEE
Confidence 456789999999997542 333444444322 23444443
No 298
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.035 Score=52.42 Aligned_cols=40 Identities=13% Similarity=0.360 Sum_probs=23.7
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
..+.+++||||+|++.... ...+...+..-+....+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 3567899999999985433 223333444434445555544
No 299
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.27 E-value=0.011 Score=50.56 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChhHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~ 88 (293)
++.++++||||+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3478899999999996544
No 300
>PRK09183 transposase/IS protein; Provisional
Probab=96.27 E-value=0.035 Score=46.91 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=17.5
Q ss_pred hhcCCcEEEEcCCCChhHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~ 87 (293)
+.++.++++.||+|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 446789999999999999443
No 301
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.25 E-value=0.012 Score=47.98 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~ 211 (293)
.+-+.+|+||||.|-+ +-...+++......+.+++.+
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhh
Confidence 5668899999999853 334445555555554455443
No 302
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.1 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCChhHHHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTV 91 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~ 91 (293)
++.++++||+|+|||....-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999996554333
No 303
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.061 Score=46.89 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=24.9
Q ss_pred CcHHHHHHHHhhh----cCC---cEEEEcCCCChhHHHHH
Q 022724 56 PSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 56 ~~~~Q~~~~~~i~----~~~---~~li~~~Tg~GKT~~~~ 88 (293)
.+|||+..|..+. +|+ -.++.||.|.||+..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~ 42 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR 42 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH
Confidence 3688888888765 443 47799999999995543
No 304
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.22 E-value=0.066 Score=49.47 Aligned_cols=129 Identities=16% Similarity=0.252 Sum_probs=61.0
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (293)
.|+.+.++||||+|||......+...... ..+.++.++. +.+.-+. +.++.+....++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------------ 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------------ 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHH---HHHHHhhcccCceeEe------------
Confidence 46789999999999996553322222222 1122344443 2233222 2233333333332221
Q ss_pred HHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc-ccHHHHHHHHhhCCCCccEEEEEeecC-hhHHHHH
Q 022724 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMT 224 (293)
Q Consensus 147 ~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~~~~q~v~~SAt~~-~~~~~~~ 224 (293)
+.+++.+...+.. +.+.++|+||.+-..... .....+..+... .....+++++++.. .++...+
T Consensus 413 ---------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 413 ---------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred ---------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHH
Confidence 1233344444432 245688999988654211 112223333222 23456777888764 3444444
Q ss_pred Hhc
Q 022724 225 TKF 227 (293)
Q Consensus 225 ~~~ 227 (293)
+.+
T Consensus 479 ~~f 481 (559)
T PRK12727 479 RRF 481 (559)
T ss_pred HHH
Confidence 443
No 305
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.19 E-value=0.069 Score=44.09 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=31.2
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.|..+++.|++|+|||....-.+.+.+.. +..++++.- .+...++.+..+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 46789999999999995544333333332 335666664 33445555554443
No 306
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.06 Score=47.03 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=26.0
Q ss_pred CcHHHHHHHHhhhc--CC---cEEEEcCCCChhHHHHH
Q 022724 56 PSAIQQRAVMPIIK--GR---DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~--~~---~~li~~~Tg~GKT~~~~ 88 (293)
.+|||+..|..+.. ++ .+++.||.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 36899999998873 33 58899999999996544
No 307
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.059 Score=49.54 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=14.6
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
.+++.||.|+|||..+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999966543
No 308
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.16 E-value=0.017 Score=51.34 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
.+..++|+||||||||.. +-.++..+.......+++.+=
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~IvtiE 186 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTYE 186 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEe
Confidence 455799999999999944 345556554332233455543
No 309
>PHA00729 NTP-binding motif containing protein
Probab=96.14 E-value=0.051 Score=44.60 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=38.3
Q ss_pred cEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc-ccH----HHHHHHHhhCCCCccEEEEEeecChhHHHHHHh
Q 022724 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFK----DQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (293)
Q Consensus 153 ~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~-~~~----~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~ 226 (293)
..++.+.+.+...+....-...+.+++||||+-.-... .+. .....+...+...++++.+...-++++...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 45555556666655432112234678999994322211 111 112223333344566777777766777766665
No 310
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.025 Score=49.84 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
.+.|+.||.|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 389999999999996543
No 311
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.037 Score=52.23 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=15.9
Q ss_pred cEEEEcCCCChhHHHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIALTV 91 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~ 91 (293)
.+++.||.|+|||.++...+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58899999999997765433
No 312
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.045 Score=48.67 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=23.1
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+..++||||+|.+....+. .+...+..-+....+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 45689999999998543322 2333344434455566554
No 313
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.09 E-value=0.04 Score=50.97 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=56.0
Q ss_pred cCCCCHHH-HHHHHHCCCCCC----cHHHHHHHHhhh--cCCcEEEEcCCCChhHHHHHHHHHhhhccCC---CceeEEE
Q 022724 37 AMGIKDDL-LRGIYQYGFEKP----SAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALI 106 (293)
Q Consensus 37 ~~~l~~~i-~~~l~~~~~~~~----~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~---~~~~~li 106 (293)
+.+...++ +..|++..-... .-+|.+==+.+. .++-++|+|..|||||.+++--+...+...+ .+..+++
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlv 265 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLV 265 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEE
Confidence 34455554 444654322221 234444333444 3456899999999999877655444443322 2334999
Q ss_pred EcCCHHHHHHHHHHHHHhhc
Q 022724 107 LSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~ 126 (293)
+.|++-...-+.+++-.++.
T Consensus 266 l~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EcCcHHHHHHHHHhchhhcc
Confidence 99999999999988877764
No 314
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.08 E-value=0.037 Score=52.57 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=22.5
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
.+.+++||||+|+|....+. .+...+..-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~N-ALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHHH-HHHHHHHcCCCCeEEEEe
Confidence 46789999999998644332 233344443344455554
No 315
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=96.07 E-value=0.084 Score=49.18 Aligned_cols=126 Identities=12% Similarity=0.142 Sum_probs=79.6
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH----HhhccCCceEEEEECCcchHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL----AIGDFINIQAHACVGGKSVGEDI 145 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 145 (293)
.|-.+.-.|--.|||| ++.|++..+...-.+.++-|+++-+-.++-+.+.+. +|.+...+ ...
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v--i~~---------- 268 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT--IEN---------- 268 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce--eee----------
Confidence 3678888999999997 466787877777778899999998877666555543 34322111 100
Q ss_pred HHHhcCCcEEEeChHHH-----HHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC-CCccEEEEEeec
Q 022724 146 RKLEHGVHVVSGTPGRV-----CDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATL 216 (293)
Q Consensus 146 ~~~~~~~~ilV~Tp~~l-----~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~-~~~q~v~~SAt~ 216 (293)
++..|.+.-|+.= ......+...=+++.+++|||||.+-. ..+..++..+. +++++|+.|.|=
T Consensus 269 ----k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 269 ----KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred ----cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEEEEeCCC
Confidence 1113444433221 111222344457789999999998743 34555555554 678899998874
No 316
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.06 E-value=0.061 Score=46.70 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=24.4
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
...+++|||+|.+.... ...+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 45799999999884432 334555555555566666654
No 317
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.06 E-value=0.067 Score=46.98 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=25.9
Q ss_pred CcHHHHHHHHhhhc--CC---cEEEEcCCCChhHHHHH
Q 022724 56 PSAIQQRAVMPIIK--GR---DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~--~~---~~li~~~Tg~GKT~~~~ 88 (293)
.+|||...|..+.. ++ -+++.||.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 37899999988764 33 58899999999995543
No 318
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=96.04 E-value=0.21 Score=44.04 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=64.8
Q ss_pred EEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC-HHHHHHHHH---HHHHhhccCCceEEEE--ECCcchHHHHHH
Q 022724 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT-RELATQTEK---VILAIGDFINIQAHAC--VGGKSVGEDIRK 147 (293)
Q Consensus 74 li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~-~~l~~q~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 147 (293)
++.++.|+|||......++..+...+...++++. |+ ..+...+.. .+..+... .+....- ....-.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------ 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII------ 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE------
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE------
Confidence 4778999999988887777776665544455555 65 455554333 33333333 2222111 111100
Q ss_pred HhcCCcEEEeChHHH--HHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeec--ChhHHHH
Q 022724 148 LEHGVHVVSGTPGRV--CDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL--PHEILEM 223 (293)
Q Consensus 148 ~~~~~~ilV~Tp~~l--~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~--~~~~~~~ 223 (293)
+.++..|.+.+-+.- ..-++. ..++++++||+-.+.+..+...+........ ....+..|.+. ......+
T Consensus 73 ~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~~~~ 146 (384)
T PF03237_consen 73 LPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWFYEI 146 (384)
T ss_dssp ETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHHHHH
T ss_pred ecCceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCceeee
Confidence 135556666653221 111121 5568999999988755544444444433332 22222555544 3344445
Q ss_pred HHhcCCCC
Q 022724 224 TTKFMTDP 231 (293)
Q Consensus 224 ~~~~~~~~ 231 (293)
......+.
T Consensus 147 ~~~~~~~~ 154 (384)
T PF03237_consen 147 FQRNLDDD 154 (384)
T ss_dssp HHHHHCTS
T ss_pred eehhhcCC
Confidence 55444443
No 319
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.02 Score=52.77 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=77.7
Q ss_pred EEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH------h-hccC-----CceEEEEECCcchH
Q 022724 75 AQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA------I-GDFI-----NIQAHACVGGKSVG 142 (293)
Q Consensus 75 i~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~------~-~~~~-----~~~~~~~~~~~~~~ 142 (293)
+.+.||||||++.+-.|++....+-+ .-|+.|..-..++.....+.. + .... .+.+-.+. ..+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn-~fse- 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN-NFSE- 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec-ccCc-
Confidence 46789999998887777777666433 467777766655554433211 0 0000 11111111 1111
Q ss_pred HHHHHHhcCCcEEEeChHHHHHHHhcC---CC---CCCCccE-EEecchhhhhccc-------------cHHHHHHHHhh
Q 022724 143 EDIRKLEHGVHVVSGTPGRVCDMIKRK---TL---RTRAIKL-LVLDESDEMLSRG-------------FKDQIYDVYRY 202 (293)
Q Consensus 143 ~~~~~~~~~~~ilV~Tp~~l~~~l~~~---~~---~~~~l~~-iViDE~h~~~~~~-------------~~~~~~~i~~~ 202 (293)
-.++..|.++|.+.|...+.+. .+ ++.+..+ ++-||+|++.... +...+...++.
T Consensus 78 -----hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~ 152 (812)
T COG3421 78 -----HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ 152 (812)
T ss_pred -----cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc
Confidence 1245689999999998876542 22 3344444 5679999985321 22222222222
Q ss_pred CCCCccEEEEEeecChhHHHHHHhc
Q 022724 203 LPPDLQVVLISATLPHEILEMTTKF 227 (293)
Q Consensus 203 l~~~~q~v~~SAt~~~~~~~~~~~~ 227 (293)
++..-++.+|||.+.+ +....+|
T Consensus 153 -nkd~~~lef~at~~k~-k~v~~ky 175 (812)
T COG3421 153 -NKDNLLLEFSATIPKE-KSVEDKY 175 (812)
T ss_pred -CCCceeehhhhcCCcc-ccHHHHh
Confidence 2455677899999833 4444444
No 320
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.065 Score=50.02 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+..++||||+|.+.... ...+...+..-+....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 456899999999985433 233444444444556666655
No 321
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.02 E-value=0.24 Score=44.74 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=31.4
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC--CHHHHHHHHHHHHHhhccCCceEEEEE
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHACV 136 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P--~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (293)
-++++|++|+|||....--+. .+... +.++++++. .+.-+.++. +.+....++.+....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~~--G~kV~lV~~D~~R~aA~eQL---k~~a~~~~vp~~~~~ 162 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQRK--GFKPCLVCADTFRAGAFDQL---KQNATKARIPFYGSY 162 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHC--CCCEEEEcCcccchhHHHHH---HHHhhccCCeEEeec
Confidence 478999999999955432222 22222 345666653 454444333 334444555554433
No 322
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.058 Score=47.30 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=25.5
Q ss_pred CcHHHHHHHHhhh----cCC---cEEEEcCCCChhHHHHH
Q 022724 56 PSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 56 ~~~~Q~~~~~~i~----~~~---~~li~~~Tg~GKT~~~~ 88 (293)
.+|||+..|..+. +|+ -.++.||.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 5788998888765 343 57899999999995543
No 323
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.99 E-value=0.015 Score=51.10 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=30.5
Q ss_pred hhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 66 ~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
.+..+++++|+||||||||. ++-+++..+.. ..+++.+-.+.|+
T Consensus 158 ~v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~---~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTT-MSKTLISAIPP---QERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHH-HHHHHHcccCC---CCCEEEECCCccc
Confidence 34578899999999999994 34445555433 3366777677765
No 324
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.98 E-value=0.25 Score=41.76 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHhhh----cCC-cEEEEcCCCChhHHHHH
Q 022724 55 KPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~-~~li~~~Tg~GKT~~~~ 88 (293)
.+++.+.+++..+. .+. .+++.||+|+|||...-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 46667777776653 333 68899999999995543
No 325
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.98 E-value=0.04 Score=51.22 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=25.8
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.....++||||+|.+.... ...+...+..-++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3567899999999985433 233444444445666777665
No 326
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.97 E-value=0.093 Score=40.67 Aligned_cols=53 Identities=28% Similarity=0.538 Sum_probs=41.0
Q ss_pred CCCccEEEecchhhhhcccc--HHHHHHHHhhCCCCccEEEEEeecChhHHHHHH
Q 022724 173 TRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~--~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~ 225 (293)
...++++|+||+-...+.++ .+.+..+++..+...-+|+.+-..|+.+.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45679999999988866664 456777888888777888888888888777653
No 327
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.97 E-value=0.055 Score=49.05 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 379999999999995543
No 328
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.96 E-value=0.1 Score=43.44 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=26.2
Q ss_pred hcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
..|.-++|.|++|+|||...+--+.+..... +..+++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 4567899999999999954443344433332 346777774
No 329
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.1 Score=46.96 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.9
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
.+++.||.|+|||.++..
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 388999999999976653
No 330
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.95 E-value=0.062 Score=49.12 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=54.3
Q ss_pred HHHhhhc-----CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEC
Q 022724 63 AVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG 137 (293)
Q Consensus 63 ~~~~i~~-----~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 137 (293)
-++.++. |.-+++.|++|+|||...+-.+ ..+.. .+.+++|+.- .+-..|+..+.+.+.....
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a-~~~a~--~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~-------- 135 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVA-ARLAA--AGGKVLYVSG-EESASQIKLRAERLGLPSD-------- 135 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHH-HHHHh--cCCeEEEEEc-cccHHHHHHHHHHcCCChh--------
Confidence 4455554 4578999999999995433333 23222 2457888874 4445677666655532111
Q ss_pred CcchHHHHHHHhcCCcEEEe---ChHHHHHHHhcCCCCCCCccEEEecchhhhhc
Q 022724 138 GKSVGEDIRKLEHGVHVVSG---TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~ilV~---Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
.+.+. ..+.+.+.+.. .+.+++|||+++.+..
T Consensus 136 ---------------~l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 ---------------NLYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---------------cEEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 02222 22334444332 3568999999998753
No 331
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.061 Score=50.68 Aligned_cols=39 Identities=15% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++||||+|+|....+ ..+...+..-+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe
Confidence 5678999999999864432 23334444444455566555
No 332
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.93 E-value=0.19 Score=42.70 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=21.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
+-++++||+|+|||....-.+.. +.. .+.++.++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~~--~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LKK--QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHh--cCCEEEEEe
Confidence 45788899999999765433322 222 234566665
No 333
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.037 Score=51.32 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.8
Q ss_pred EEEEcCCCChhHHHHH
Q 022724 73 VIAQAQSGTGKTSMIA 88 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~~ 88 (293)
+++.||.|+|||..+.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5999999999997654
No 334
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.13 Score=45.39 Aligned_cols=39 Identities=21% Similarity=0.381 Sum_probs=24.9
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
....++||||+|.|.... ...+...+..-+.+..++++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999985443 333444555544455566665
No 335
>PRK04195 replication factor C large subunit; Provisional
Probab=95.92 E-value=0.067 Score=49.50 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
.+.+++.||+|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999554
No 336
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.89 E-value=0.021 Score=54.75 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=38.8
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecCh
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~ 218 (293)
.+.-++|+|+-|.+.+.....-+..+++..+++...++.|-+-|+
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 334699999999998888888899999999999999999987554
No 337
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.071 Score=50.47 Aligned_cols=40 Identities=13% Similarity=0.339 Sum_probs=25.0
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
+...+++||||+|.+.... ...+...+..-+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999985433 223333344444566677655
No 338
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.87 E-value=0.071 Score=46.15 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 119 (293)
++++++.||+|+|||.... ++...+... +..+.++ ...+++.++..
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~~--g~~v~~~-~~~~l~~~lk~ 201 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAKK--GVSSTLL-HFPEFIRELKN 201 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCEEEE-EHHHHHHHHHH
Confidence 4689999999999994433 333444332 3334433 32345544443
No 339
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.87 E-value=0.066 Score=51.17 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=75.1
Q ss_pred HHHHHHHHhhhcC-----CcEEEEcCCCChhHHHHHHHHHhh-hccC-----CCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 58 AIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQT-VDTS-----SREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 58 ~~Q~~~~~~i~~~-----~~~li~~~Tg~GKT~~~~~~~~~~-l~~~-----~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
..|...|-..... +-.|+.-..|-|||..-+..++.. .... ......+++||+. +..|....+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s-~~~qW~~elek~~~ 213 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTS-LLTQWKTELEKVTE 213 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchH-HHHHHHHHHhccCC
Confidence 5566655554432 346777778999997655444433 2222 1344678888854 45676666666666
Q ss_pred cCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
...+.+..++| .. .. ....++.+|+++|++.+.. ..+..-..-.+|+||+|.+-..
T Consensus 214 ~~~l~v~v~~g-r~--kd-~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 214 EDKLSIYVYHG-RT--KD-KSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred ccceEEEEecc-cc--cc-cchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCc
Confidence 66777777777 11 11 1222456899999977764 1111223345999999998544
No 340
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.12 Score=47.95 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.2
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
.++++||.|+|||..+.+
T Consensus 45 a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARI 62 (507)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 699999999999966543
No 341
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.83 E-value=0.039 Score=48.33 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=28.9
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
+..+++++|+|+||||||. ++-+++..+.. ..+++.+=-+.|+
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~ip~---~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREIPA---IERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhCCC---CCeEEEecCCCcc
Confidence 4468899999999999994 34455555543 3356665455554
No 342
>PRK06904 replicative DNA helicase; Validated
Probab=95.81 E-value=0.21 Score=46.03 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=70.4
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEC-CcchHHH-
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG-GKSVGED- 144 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 144 (293)
+..|.-+++.|.+|+|||. |++-+...+... .+..++|++.- --..|+..++-.........-. ..| ..+..+.
T Consensus 218 l~~G~LiiIaarPg~GKTa-falnia~~~a~~-~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i-~~g~~l~~~e~~ 293 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTT-FAMNLCENAAMA-SEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKI-RTGQNLDQQDWA 293 (472)
T ss_pred cCCCcEEEEEeCCCCChHH-HHHHHHHHHHHh-cCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHh-ccCCCCCHHHHH
Confidence 3345668888999999995 444444433221 13356666543 3344555444332222111110 122 1111111
Q ss_pred -----HHHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhhccc----cHHHHHHHHhhCC-----C
Q 022724 145 -----IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----P 205 (293)
Q Consensus 145 -----~~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~----~~~~~~~i~~~l~-----~ 205 (293)
...+...+.+.|- |+..+....++.......+++||||-.+.+...+ ....+..+-+.+. .
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 373 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKEL 373 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 1122233446652 5555554333211112357899999999885322 2223333333331 2
Q ss_pred CccEEEEEeecChhH
Q 022724 206 DLQVVLISATLPHEI 220 (293)
Q Consensus 206 ~~q~v~~SAt~~~~~ 220 (293)
++.++++| -++..+
T Consensus 374 ~ipVi~ls-QLnR~~ 387 (472)
T PRK06904 374 KVPVVALS-QLNRTL 387 (472)
T ss_pred CCeEEEEE-ecCchh
Confidence 56777776 444443
No 343
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.079 Score=49.52 Aligned_cols=40 Identities=15% Similarity=0.360 Sum_probs=24.4
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
..+.+++||||+|.|....+ ..+...+..-+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999999854332 22333344444556666655
No 344
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.80 E-value=0.059 Score=48.73 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 022724 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (293)
Q Consensus 43 ~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (293)
.+++.++. .+-.+...|.++.-..-.|+. .|.|=.|||||...++-+ ..+...+...+++|-+-|+.|+.++.+.+.
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~knPd~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHSKNPDSRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhcCCCCceEEEEeehHHHHHHHHHHHH
Confidence 44555544 455677788887666667777 788999999996544333 344444455699999999999999998887
Q ss_pred Hhh
Q 022724 123 AIG 125 (293)
Q Consensus 123 ~~~ 125 (293)
++.
T Consensus 228 ~F~ 230 (660)
T COG3972 228 EFF 230 (660)
T ss_pred HHH
Confidence 764
No 345
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.78 E-value=0.022 Score=45.20 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=26.2
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
+++++++.||+|+|||..+.. +...+... +..+++ ++..+|...+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~a-i~~~~~~~--g~~v~f-~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVA-IANEAIRK--GYSVLF-ITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHH-HHHHHHHT--T--EEE-EEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHH-HHHHhccC--CcceeE-eecCceecccc
Confidence 578999999999999965443 33333332 334544 45555655543
No 346
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.75 E-value=0.054 Score=52.40 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=24.6
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChh
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~ 219 (293)
+..+++|||+|.+.... -..++..+ ...+++++++|-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~q----QdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ----QDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHH----HHHHHHHh-cCceEEEEEecCCCh
Confidence 45689999999984322 22333333 246788888875543
No 347
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.037 Score=52.34 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=22.4
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++||||+|+|....+.. +...+..-+....+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEEEEEE
Confidence 467899999999986443222 222233333345555544
No 348
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.67 E-value=0.016 Score=47.31 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=14.0
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
++++.||.|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 7999999999999544
No 349
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.66 E-value=0.031 Score=47.42 Aligned_cols=29 Identities=10% Similarity=0.295 Sum_probs=21.3
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCC
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSR 100 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~ 100 (293)
.-++|.||||||||.. +.++++.+.....
T Consensus 126 GLILVTGpTGSGKSTT-lAamId~iN~~~~ 154 (353)
T COG2805 126 GLILVTGPTGSGKSTT-LAAMIDYINKHKA 154 (353)
T ss_pred ceEEEeCCCCCcHHHH-HHHHHHHHhccCC
Confidence 3588999999999954 4467777766543
No 350
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.66 E-value=0.06 Score=50.61 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=14.7
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
.+++.||.|+|||..+..
T Consensus 40 A~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999965543
No 351
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.077 Score=47.43 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=30.7
Q ss_pred CccEEEecchhhhhcc-ccHHHHHHHHhhCC-CCccEEEEEeecChhHH
Q 022724 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHEIL 221 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~-~~~q~v~~SAt~~~~~~ 221 (293)
++++++||+++.+... .....+-.++..+. ...|+++.|-..|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6789999999998654 33444444444443 44577777777665544
No 352
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.61 E-value=0.05 Score=47.09 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=39.7
Q ss_pred CCCCCcHHHHHHHHhhhcC-CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 52 GFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~~~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
.|...++-|...+-.+... .|++++|.||||||.. +-++...+.. .-|+|.+=-+.||
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~---~eRvItiEDtaEL 212 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDS---DERVITIEDTAEL 212 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCC---cccEEEEeehhhh
Confidence 3557888888877776655 5999999999999942 2222223222 2278888777776
No 353
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.60 E-value=0.13 Score=45.77 Aligned_cols=97 Identities=12% Similarity=0.166 Sum_probs=53.1
Q ss_pred HHHhhhc-----CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEC
Q 022724 63 AVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG 137 (293)
Q Consensus 63 ~~~~i~~-----~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 137 (293)
-++.++. |.-+++.|++|+|||...+..+ ..+... +.+++|+.-. +...|+..+.+++.-... ++ .+..
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a-~~~a~~--g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~-~l-~l~~ 143 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA-ARLAKR--GGKVLYVSGE-ESPEQIKLRADRLGISTE-NL-YLLA 143 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHH-HHHHhc--CCeEEEEECC-cCHHHHHHHHHHcCCCcc-cE-EEEc
Confidence 4455553 4678999999999995443333 333222 3478887653 345666665555432110 00 0110
Q ss_pred CcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 138 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 138 ~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
. ...+.+...+.. .+.+++|||+++.+.
T Consensus 144 e------------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 144 E------------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred c------------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 0 123444444432 356899999999874
No 354
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.59 E-value=0.034 Score=49.21 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=20.5
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhcc
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~ 97 (293)
.+..++|+||||||||... -.++..+..
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHhh
Confidence 5678999999999999543 445555543
No 355
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.33 Score=43.71 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=62.2
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
.-++++||+|+|||....--+....... +.++.++. +.+..+..+. +.+....++....
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~aA~eQL---k~yAe~lgvp~~~-------------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIAAIEQL---KRYADTMGMPFYP-------------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhhHHHHH---HHHHHhcCCCeee--------------
Confidence 3478999999999966554443322221 33444444 3344433322 2333333332211
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh-ccccHHHHHHHHhhCC---CCccEEEEEeecCh-hHHHH
Q 022724 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLP---PDLQVVLISATLPH-EILEM 223 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~-~~~~~~~~~~i~~~l~---~~~q~v~~SAt~~~-~~~~~ 223 (293)
+..+..+...+. ..+.++|+||=+-... +......+..+++... +.-.++.+|||... ++.+.
T Consensus 285 -------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~ 352 (432)
T PRK12724 285 -------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV 352 (432)
T ss_pred -------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 111233333333 1456889999665432 1222334444444432 22467888999876 45555
Q ss_pred HHhc
Q 022724 224 TTKF 227 (293)
Q Consensus 224 ~~~~ 227 (293)
...+
T Consensus 353 ~~~f 356 (432)
T PRK12724 353 LKAY 356 (432)
T ss_pred HHHh
Confidence 5444
No 356
>PRK06620 hypothetical protein; Validated
Probab=95.55 E-value=0.035 Score=45.48 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChhHHH
Q 022724 71 RDVIAQAQSGTGKTSM 86 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~ 86 (293)
+.+++.||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999943
No 357
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.53 E-value=0.083 Score=42.13 Aligned_cols=144 Identities=16% Similarity=0.170 Sum_probs=75.4
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHH-HHHHHHHHhhccCCceEEEEECCcchHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT-QTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (293)
...++.+..++|.|||.+++--++..+.. |.+++++-=.+.-.. .=...++++ .++.....-.+......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~~~~~--- 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH---GKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFTWETQ--- 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC---CCeEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCcccCC---
Confidence 55689999999999998877666665544 446666543222100 111112221 12222221111110000
Q ss_pred HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc--HHHHHHHHhhCCCCccEEEEEeecChhHHHHHH
Q 022724 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (293)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~--~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~ 225 (293)
...--.......+...+. .+.-..++++|+||+-..++.++ ...+..++...+...-+|+.--..|+.+.+.+.
T Consensus 92 ---~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 92 ---DRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred ---CcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 000000001111111111 12235678999999998887774 456777777777777777776677887776654
No 358
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.13 Score=45.72 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=24.8
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEee
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt 215 (293)
.....++||||+|.+.... ...+...+..-+....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 3567899999999985332 33344444544444555555443
No 359
>PRK04328 hypothetical protein; Provisional
Probab=95.48 E-value=0.14 Score=42.96 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=33.8
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
.|..+++.|++|+|||.-.+-.+.+.+.. +.+++|+. +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 45679999999999996554445454433 34566666 4445556666665543
No 360
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.44 E-value=0.14 Score=44.50 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHhhh----cCC---cEEEEcCCCChhHHHHH
Q 022724 55 KPSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~---~~li~~~Tg~GKT~~~~ 88 (293)
.++|||+..|..+. +|+ -+++.||.|.||+..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~ 43 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE 43 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 46789999988866 343 58999999999995443
No 361
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.43 E-value=0.11 Score=46.27 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=21.7
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccC
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS 98 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~ 98 (293)
+-.|+-++|+||+|+|||... -.+...+...
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhhccc
Confidence 347889999999999999643 3344544443
No 362
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.42 E-value=0.13 Score=51.50 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=35.5
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecCh
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~ 218 (293)
..--+||||++|.+.+......+..+++..+....+|+.|-+.++
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 344689999999986555667888899999888999888877543
No 363
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.41 E-value=0.032 Score=45.99 Aligned_cols=132 Identities=13% Similarity=0.164 Sum_probs=65.5
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccC-------CceEEEEECCcch
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI-------NIQAHACVGGKSV 141 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~-------~~~~~~~~~~~~~ 141 (293)
.|..+++.|++|+|||.-.+-.+.+.+... +-++++++- .+-..++.+.++.++-.. .+.+.........
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 456899999999999966555555554441 235677763 333466666665443111 1111111100000
Q ss_pred HHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc----ccHHHHHHHHhhCCCCccEEEEEeec
Q 022724 142 GEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 142 ~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~----~~~~~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
. . -..++.+...+... +.-.+.+.+|||-+..+... .+...+..+...+.....+.++++..
T Consensus 95 ~----------~--~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 95 W----------S--PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp -----------T--SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred c----------c--ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 0 0 12233343333221 00112289999999988221 24455666666665555566666663
No 364
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.074 Score=50.09 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=15.1
Q ss_pred cEEEEcCCCChhHHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIALT 90 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~ 90 (293)
-++++||.|+|||.++-..
T Consensus 40 ayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999665443
No 365
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.33 E-value=0.11 Score=43.78 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
.|.-++|.|++|+|||...+-.+.+.+.. +.+++|+.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 45678999999999996555444444332 446777773
No 366
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.32 E-value=0.16 Score=39.94 Aligned_cols=52 Identities=21% Similarity=0.463 Sum_probs=40.3
Q ss_pred CCccEEEecchhhhhcccc--HHHHHHHHhhCCCCccEEEEEeecChhHHHHHH
Q 022724 174 RAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~--~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~ 225 (293)
..++++|+||+-...+.++ ...+..+++..++..-+|+..-..|+.+.+.+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 5679999999998877764 456677778777777888887778888777664
No 367
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.12 Score=48.20 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=39.4
Q ss_pred EEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc-------ccHHHHHHHHhhCC---CCccEEEEEeecChh
Q 022724 154 VVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-------GFKDQIYDVYRYLP---PDLQVVLISATLPHE 219 (293)
Q Consensus 154 ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~-------~~~~~~~~i~~~l~---~~~q~v~~SAt~~~~ 219 (293)
-+||--++..+.+..+.- .+..+.|.|||+|.+... .-...++.++..+. ....+..+.||=-++
T Consensus 584 kYVGESErAVR~vFqRAR-~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRAR-ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred HHhhhHHHHHHHHHHHhh-cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 345556666664443221 355789999999998532 12344555555553 456788888885444
No 368
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.29 E-value=0.56 Score=36.83 Aligned_cols=141 Identities=17% Similarity=0.242 Sum_probs=64.7
Q ss_pred EEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCC
Q 022724 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (293)
+.|-...|-|||.+++=-++..+-. +.+++++-=.+.-. .......+....++.+...-.+......... .
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg~~--~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~----~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKGGR--YSGELKALKKLPNVEIERFGKGFVWRMNEEE----E 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS--SS----HHHHHHGGGT--EEEE--TT----GGGHH----H
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecCCC--CcCHHHHHHhCCeEEEEEcCCcccccCCCcH----H
Confidence 5566788999999877666665544 56777776544411 1122222222222322221111100000000 0
Q ss_pred cEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc--HHHHHHHHhhCCCCccEEEEEeecChhHHHHHH
Q 022724 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (293)
Q Consensus 153 ~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~--~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~ 225 (293)
+ .......++..+ ..+.-..+++||+||+-...+.++ ...+..++...+...-+|+.--..|+.+.+.+.
T Consensus 77 ~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 77 D--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp H--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred H--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 0 000111112111 123346789999999998877765 456777777777777788777778888777663
No 369
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.27 E-value=0.21 Score=45.38 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=56.9
Q ss_pred HHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHH
Q 022724 64 VMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE 143 (293)
Q Consensus 64 ~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (293)
+.-+..|.-+++.|++|+|||...+-.+.+..... +..++|++.- --..|+..++-... .++....+..+.-...
T Consensus 188 ~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fSlE-m~~~~l~~Rl~~~~--~~v~~~~~~~~~l~~~ 262 (421)
T TIGR03600 188 TNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFSLE-MSAEQLGERLLASK--SGINTGNIRTGRFNDS 262 (421)
T ss_pred hcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHhcCCCCHH
Confidence 33344567789999999999954433332322122 3456676632 23444444433221 1222111111111111
Q ss_pred HH-------HHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhhc
Q 022724 144 DI-------RKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 144 ~~-------~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
+. ..+.+ ..+.|. |++.+...++.-......+++||||=.+.+..
T Consensus 263 ~~~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 263 DFNRLLNAVDRLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 11 22222 244443 44455444432111123588999999998853
No 370
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.27 E-value=0.033 Score=47.30 Aligned_cols=44 Identities=14% Similarity=0.338 Sum_probs=30.5
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
+..+.+++++|+||||||.. +-.++..+... ..+++.+-...|+
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT--TSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchH-HHHHhhhcccc--ccceEEeccccce
Confidence 34578999999999999954 45566666554 2467777666664
No 371
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.26 E-value=0.38 Score=39.87 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
|.-+++.|++|+|||.-....+...+.. +.+++|+.-.. -..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCC-CHHHHHHHHHHC
Confidence 4578999999999995544334443332 44677776543 345565655554
No 372
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.25 E-value=0.15 Score=43.06 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=67.7
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHH---
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI--- 145 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 145 (293)
.|.-+++.|++|.|||...+-.+.+..... +..++|++.-.. ..++..++-........ ..+..+.....+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~-~~~l~~R~la~~s~v~~--~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMS-EEELAARLLARLSGVPY--NKIRSGDLSDEEFERL 92 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS--HHHHHHHHHHHHHTSTH--HHHHCCGCHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCC-HHHHHHHHHHHhhcchh--hhhhccccCHHHHHHH
Confidence 456789999999999955444444444332 356888875322 12333333221111111 1111111111111
Q ss_pred ----HHHhcCCcEEE-e----ChHHHHHHHhcCCCCCCCccEEEecchhhhhcc----ccHHHHHHHHhhCC-----CCc
Q 022724 146 ----RKLEHGVHVVS-G----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLP-----PDL 207 (293)
Q Consensus 146 ----~~~~~~~~ilV-~----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~----~~~~~~~~i~~~l~-----~~~ 207 (293)
..+.+. .+.| . |++.+...++.-......+++||||-+|.+... .....+..+.+.+. .++
T Consensus 93 ~~~~~~l~~~-~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 171 (259)
T PF03796_consen 93 QAAAEKLSDL-PLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNI 171 (259)
T ss_dssp HHHHHHHHTS-EEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhC-cEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 122222 3443 3 455666655442222367899999999998553 23333433333322 245
Q ss_pred cEEEEEee
Q 022724 208 QVVLISAT 215 (293)
Q Consensus 208 q~v~~SAt 215 (293)
.++++|..
T Consensus 172 ~vi~~sQl 179 (259)
T PF03796_consen 172 PVIALSQL 179 (259)
T ss_dssp EEEEEEEB
T ss_pred eEEEcccc
Confidence 66666553
No 373
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.14 Score=48.58 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=34.0
Q ss_pred cEEEe-ChHHHHHHHhc-CCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC
Q 022724 153 HVVSG-TPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (293)
Q Consensus 153 ~ilV~-Tp~~l~~~l~~-~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~ 204 (293)
.-+|| -|+++.+-++. +..+ -++++||+|.|.....++--..++.-+.
T Consensus 397 RTYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred ccccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhhcC
Confidence 34444 69999998876 3333 3799999999987666666666666664
No 374
>PRK13764 ATPase; Provisional
Probab=95.21 E-value=0.045 Score=51.50 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=21.0
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhcc
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~ 97 (293)
.+++++++||||||||. ++-+++..+..
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYAD 283 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHhh
Confidence 46789999999999995 34556666543
No 375
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.18 E-value=0.035 Score=52.01 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=26.2
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
+++-+.+|+||+-.-+|......+...+..+.++.-+|..
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3667889999998877776666666666555444444443
No 376
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.16 E-value=0.04 Score=45.17 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=28.8
Q ss_pred ChHHHHHHHhcCCCCCCCccEEEecchhhhh-c----cccHHHHHHHHhhCCC-CccEEEEEeec
Q 022724 158 TPGRVCDMIKRKTLRTRAIKLLVLDESDEML-S----RGFKDQIYDVYRYLPP-DLQVVLISATL 216 (293)
Q Consensus 158 Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~-~----~~~~~~~~~i~~~l~~-~~q~v~~SAt~ 216 (293)
+...+...+...... -+|||||+|.+. . ..+...+..++..... ....++++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344555555443222 689999999998 2 2344556666665322 22334455553
No 377
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=0.073 Score=50.35 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=31.5
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
+++...+|+|||-..+|..-...++..+..+..+ +.++.-|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 4678899999999999887788888888777666 4444434
No 378
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.12 E-value=0.52 Score=41.85 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (293)
.+.+-+.|+.|.|||+. +-++........+.|+ +..+-..++...+.++... ..+.
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~k~R~----HFh~Fm~~vh~~l~~~~~~----------~~~l-------- 117 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKRKRRV----HFHEFMLDVHSRLHQLRGQ----------DDPL-------- 117 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCccccccc----cccHHHHHHHHHHHHHhCC----------CccH--------
Confidence 46899999999999953 2333332222222222 6667777777777765410 0000
Q ss_pred cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhC-CCCccEEEEEeecChh
Q 022724 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHE 219 (293)
Q Consensus 150 ~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l-~~~~q~v~~SAt~~~~ 219 (293)
..+.+.+ .+...+|.+||+|.- |.+-...+..+++.+ ....-+|+.|-+.|++
T Consensus 118 ----------~~va~~l------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 118 ----------PQVADEL------AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred ----------HHHHHHH------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 1111221 234568999999863 444445555555554 3456666666666655
No 379
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.13 Score=48.70 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.6
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
.+++.||.|+|||.....
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999966543
No 380
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.06 E-value=0.034 Score=52.05 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=32.8
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhh
Q 022724 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTV 95 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l 95 (293)
+|+.+|.+....+. .|+--|+.+|||+|||++.+=+.+..+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 59999998877654 789999999999999987665555444
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.05 E-value=1.1 Score=35.05 Aligned_cols=54 Identities=11% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCccEEEecchhhhh-ccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhc
Q 022724 174 RAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 227 (293)
Q Consensus 174 ~~l~~iViDE~h~~~-~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~ 227 (293)
.+.+++|+|...... +......+..+........-++.+++.-+.+..+....+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 346788888887642 122333344444333345556667776555544444443
No 382
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.05 E-value=0.061 Score=48.93 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=29.7
Q ss_pred CcHHHHHHHHhhhcCC--cEEEEcCCCChhHHHHHHHHHhhhccC
Q 022724 56 PSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~--~~li~~~Tg~GKT~~~~~~~~~~l~~~ 98 (293)
.++.|...+..+.+.. =+++.||||||||.. +..++..+...
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 3577777787777654 488899999999954 44555665554
No 383
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.00 E-value=0.22 Score=44.77 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=28.9
Q ss_pred CHHHHHHHHHCCCC--CCcHHHH-H----HHHhhhcCCcEEEEcCCCChhHHHHH
Q 022724 41 KDDLLRGIYQYGFE--KPSAIQQ-R----AVMPIIKGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 41 ~~~i~~~l~~~~~~--~~~~~Q~-~----~~~~i~~~~~~li~~~Tg~GKT~~~~ 88 (293)
.+|+---+...||. .++.-|+ . .++.+.++.|++..||+|+|||-.|.
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 33444445556766 2222222 1 12445578899999999999995443
No 384
>PRK09354 recA recombinase A; Provisional
Probab=94.98 E-value=0.072 Score=46.75 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~ 115 (293)
|.-+.|.||+|+|||...+..+.+.... +..++|+-.-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~---G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchHH
Confidence 4578899999999997665555444433 457888887665543
No 385
>PRK05748 replicative DNA helicase; Provisional
Probab=94.96 E-value=0.26 Score=45.22 Aligned_cols=114 Identities=19% Similarity=0.205 Sum_probs=54.2
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHH---
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI--- 145 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 145 (293)
.|.-++|.|++|+|||.- .+-+....... .+..++|++. ..-..|+..++-..... +....+..+.-...+.
T Consensus 202 ~G~livIaarpg~GKT~~-al~ia~~~a~~-~g~~v~~fSl-Ems~~~l~~R~l~~~~~--v~~~~i~~~~l~~~e~~~~ 276 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAF-ALNIAQNVATK-TDKNVAIFSL-EMGAESLVMRMLCAEGN--IDAQRLRTGQLTDDDWPKL 276 (448)
T ss_pred CCceEEEEeCCCCCchHH-HHHHHHHHHHh-CCCeEEEEeC-CCCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHHHHHH
Confidence 456788899999999944 44444333221 1334566543 33344555544322111 1111111111111121
Q ss_pred ----HHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 146 ----RKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 146 ----~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
..+.+ ..+.|. |++.+...++.-......+++||||=.+.+.
T Consensus 277 ~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 277 TIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 12222 235442 4455554433311111258899999999884
No 386
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.96 E-value=0.1 Score=46.05 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.5
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.||.|+|||...
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999554
No 387
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.24 Score=47.05 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.9
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
.++++||.|+|||.++..
T Consensus 40 a~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999976543
No 388
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.91 E-value=0.24 Score=46.62 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=14.8
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
-+++.||.|+|||.++..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999976543
No 389
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.87 E-value=0.22 Score=40.40 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
.|.-+.+.||+|+|||...+..+.+.... +.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 35678999999999996655444443332 3467777654
No 390
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.82 E-value=0.19 Score=49.45 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999544
No 391
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.81 E-value=1.6 Score=38.07 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhC---CCCccEEEEEeecC
Q 022724 160 GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL---PPDLQVVLISATLP 217 (293)
Q Consensus 160 ~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l---~~~~q~v~~SAt~~ 217 (293)
.+++..++.+...-+.--.+|+||+|.+........+-.++..- +..+-++++|..+.
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 45666666654444444679999999987665544444444433 34566777777653
No 392
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.81 E-value=0.084 Score=49.94 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=27.1
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
++-..+|+||+..-+|......+...+..+.+++.++..
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI 520 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE
Confidence 556899999999888877777777766655544333333
No 393
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.78 E-value=0.19 Score=44.74 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=37.0
Q ss_pred CcHHHHHHHHhhh---cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 56 PSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 56 ~~~~Q~~~~~~i~---~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
+.+.=.++++.+. +|+-.+|.||.|+|||.. +-.+...+........++|++ ..+--+++.+..+.+.
T Consensus 152 ~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~nhFDv~~~VvL-IgER~~EVtdiqrsIl 222 (416)
T PRK09376 152 PEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITTNHPEVHLIVLL-IDERPEEVTDMQRSVK 222 (416)
T ss_pred CcccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHHhhcCCeEEEEEE-eCCchhHHHHHHHHhc
Confidence 3444456666544 788999999999999953 333444444432233333322 3333334444444443
No 394
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=94.72 E-value=0.07 Score=42.21 Aligned_cols=38 Identities=11% Similarity=0.164 Sum_probs=25.2
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
-.++.||.+||||.- ++-.++++... +.+++++-|...
T Consensus 3 l~~i~GpM~sGKS~e-Li~~~~~~~~~--~~~v~~~kp~~D 40 (176)
T PF00265_consen 3 LEFITGPMFSGKSTE-LIRRIHRYEIA--GKKVLVFKPAID 40 (176)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHT--T-EEEEEEESTS
T ss_pred EEEEECCcCChhHHH-HHHHHHHHHhC--CCeEEEEEeccc
Confidence 467899999999954 33444444443 457888888543
No 395
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.71 E-value=0.14 Score=44.56 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=44.8
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHH-HHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQR-AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~-~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
..+...+++..-+. +.| .+++.|.. .|-.+..+++++++|+|||||| .++.+++..+-.. .+.+.+=-+.
T Consensus 110 Rk~~~~~~t~~~l~---~~g--t~~~~~~ayL~~~ie~~~siii~G~t~sGKT-t~lnall~~Ip~~---~rivtIEdt~ 180 (312)
T COG0630 110 RKFSDEPITPEDLI---EYG--TISPEQAAYLWLAIEARKSIIICGGTASGKT-TLLNALLDFIPPE---ERIVTIEDTP 180 (312)
T ss_pred EcCCCCCCCHHHHh---hcC--CCCHHHHHHHHHHHHcCCcEEEECCCCCCHH-HHHHHHHHhCCch---hcEEEEeccc
Confidence 34555555543333 223 45555543 6677788999999999999999 4555666655442 3566665555
Q ss_pred HH
Q 022724 112 EL 113 (293)
Q Consensus 112 ~l 113 (293)
++
T Consensus 181 E~ 182 (312)
T COG0630 181 EL 182 (312)
T ss_pred cc
Confidence 54
No 396
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.68 E-value=0.11 Score=45.13 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=28.8
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~ 115 (293)
.|.-+.|.||+|+|||...+..+.+.... +.+++|+-.-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHH
Confidence 34678999999999996655444444332 456788766544443
No 397
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.67 E-value=0.076 Score=46.19 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~ 115 (293)
|.-+.|.||+|+|||...+..+.+.... +.+++|+..-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL---GGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEECccccHHH
Confidence 4678899999999996555444443332 457888887665543
No 398
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.66 E-value=0.3 Score=43.92 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
+.+++.||.|+|||..+.
T Consensus 37 ha~Lf~Gp~G~GKt~lA~ 54 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAAR 54 (394)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 458999999999995544
No 399
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.59 E-value=0.68 Score=42.05 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=41.7
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHH----H
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGED----I 145 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 145 (293)
-++++|++|+|||....--+....... +.+++++. +.|.-+.++ ++.+....++.+...........- .
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~~a~~Q---L~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRPAAIEQ---LKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccchHHHHH---HHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 478999999999976543333321122 33555554 334443333 333344455555443332222111 1
Q ss_pred HH-HhcCCc-EEEeChHHH
Q 022724 146 RK-LEHGVH-VVSGTPGRV 162 (293)
Q Consensus 146 ~~-~~~~~~-ilV~Tp~~l 162 (293)
+. ..++++ |+|=||+++
T Consensus 176 ~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHhcCCCEEEEeCCCcc
Confidence 11 123444 666777654
No 400
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.17 Score=48.21 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
..+++.||.|+|||..+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred ceEEEECCCCCChHHHHH
Confidence 467999999999996654
No 401
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.37 Score=44.34 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCccEEEecchhhhhccc-------cHHHHHHHHhhCC---CCccEEEEEee-cChhHHH
Q 022724 174 RAIKLLVLDESDEMLSRG-------FKDQIYDVYRYLP---PDLQVVLISAT-LPHEILE 222 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~-------~~~~~~~i~~~l~---~~~q~v~~SAt-~~~~~~~ 222 (293)
+..+.|.|||+|.+...- ....++.++..+. .+--+|++.|| +|+++..
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 456889999999986431 1233455555553 34568888888 3544433
No 402
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.54 E-value=0.38 Score=48.00 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=60.9
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.+++|++|+++-+..+.+.++++. .+.++..+||+.+..+..+.+ ....+|+|+|. .+ ...+++.++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----ii-e~GIDIp~v 731 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----II-ETGIDIPNA 731 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcccccccC
Confidence 5689999999999999888888764 357899999998766544333 24679999995 22 336889999
Q ss_pred cEEEecchhhh
Q 022724 177 KLLVLDESDEM 187 (293)
Q Consensus 177 ~~iViDE~h~~ 187 (293)
+++|++.++.+
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999764
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=94.53 E-value=0.7 Score=42.01 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=30.7
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
-++++|++|+|||....--+.. +... .+.+++++. +.+.-+.++ ++.+....++.+..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~-l~~~-~G~kV~lV~~D~~R~aa~eQ---L~~~a~~~gv~v~~ 161 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKY-LKKK-KKKKVLLVAADVYRPAAIEQ---LKTLGEQIGVPVFP 161 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHh-cCCcEEEEEccccchHHHHH---HHHHHhhcCCeEEe
Confidence 4788999999999665433332 2222 133455554 345544332 33344455555544
No 404
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.48 E-value=0.36 Score=47.97 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+|.++.||+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 58999999999999554
No 405
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.47 E-value=0.18 Score=49.07 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=18.9
Q ss_pred HHHHHhhhc--CCcEEEEcCCCChhHHHH
Q 022724 61 QRAVMPIIK--GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 61 ~~~~~~i~~--~~~~li~~~Tg~GKT~~~ 87 (293)
.+.+..+.+ ..|+++.||+|+|||...
T Consensus 196 ~~~i~iL~r~~~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 334444433 469999999999999554
No 406
>PF12846 AAA_10: AAA-like domain
Probab=94.45 E-value=0.054 Score=46.44 Aligned_cols=41 Identities=15% Similarity=0.389 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
+.|++|.|+||+|||.... .++..+... +..++++=|..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~--g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR--GPRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc--CCCEEEEcCCchH
Confidence 3689999999999997666 444444333 3456666555443
No 407
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.43 E-value=0.19 Score=49.08 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=29.0
Q ss_pred ccCcccCCCCHHHHHHHHHC-CCCCCcHHHHHHHHh--hhcCCcEEEEcCCCChhHHH
Q 022724 32 ITSFDAMGIKDDLLRGIYQY-GFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~-~~~~~~~~Q~~~~~~--i~~~~~~li~~~Tg~GKT~~ 86 (293)
-.+|++++-.....+.+.++ .+....| +.+.. +..++.+++.||+|+|||..
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~---~~~~~~gi~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHP---ELFEHLGIEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCH---HHHHhcCCCCCceEEEECCCCCChHHH
Confidence 35677775555555555432 1111111 11222 23467899999999999954
No 408
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.42 E-value=0.46 Score=39.06 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=33.3
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
.|..+++.|++|+|||...+-.+...+.. +.+++|+.-. +-.+++.+.+..+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e-~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLE-EREERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC-CCHHHHHHHHHHcC
Confidence 35678999999999985433334343333 4467776653 34677777666543
No 409
>PRK09087 hypothetical protein; Validated
Probab=94.42 E-value=0.15 Score=42.19 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCChhHH
Q 022724 70 GRDVIAQAQSGTGKTS 85 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~ 85 (293)
++.+++.||+|+|||.
T Consensus 44 ~~~l~l~G~~GsGKTh 59 (226)
T PRK09087 44 SPVVVLAGPVGSGKTH 59 (226)
T ss_pred CCeEEEECCCCCCHHH
Confidence 3459999999999994
No 410
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.23 Score=42.72 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=38.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhc--cCCCcee-EEEEcC-----------CHHHHHHHHHHHHHhhccCCceEEEE
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQ-ALILSP-----------TRELATQTEKVILAIGDFINIQAHAC 135 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~--~~~~~~~-~lil~P-----------~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (293)
++-+++.||+|+|||. ..-++.+++. ...+..+ .+|=.. +--|+.++++.+..+.+.-+.-++.+
T Consensus 177 NRliLlhGPPGTGKTS-LCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS-LCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhH-HHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4568999999999992 2223444442 1111112 222222 33567777788887776666655555
Q ss_pred EC
Q 022724 136 VG 137 (293)
Q Consensus 136 ~~ 137 (293)
.+
T Consensus 256 ID 257 (423)
T KOG0744|consen 256 ID 257 (423)
T ss_pred eH
Confidence 43
No 411
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.28 E-value=0.57 Score=39.01 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=21.0
Q ss_pred HhhhcCC-cEEEEcCCCChhHHHHHHHHHhhhc
Q 022724 65 MPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVD 96 (293)
Q Consensus 65 ~~i~~~~-~~li~~~Tg~GKT~~~~~~~~~~l~ 96 (293)
+.+..|+ -+.++|+-|||||...= ++...+.
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHhcC
Confidence 4455666 78899999999996544 3433333
No 412
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.26 E-value=0.14 Score=43.45 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=35.1
Q ss_pred HHHHCCCCCCcHHHHHHHHhhhc--CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 47 GIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~i~~--~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
.+.++|+ .+.|.+.+..+.. +..++|.||||||||.. +-.++..+... +.+++.+-...|
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~~~--~~~iitiEdp~E 119 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELNTP--EKNIITVEDPVE 119 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhCCC--CCeEEEECCCce
Confidence 3555663 4556666665543 34689999999999954 34455555432 224555443333
No 413
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.19 E-value=0.39 Score=36.53 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=23.0
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
..+.+++++||.-.-+|......+..+++.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 3456899999998777776666676677666
No 414
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.19 E-value=0.66 Score=36.76 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=72.8
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHH-HHHHHHHhhccCCceEEEEECCcchHHHHHHHhc
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ-TEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
-++|....|-|||.+++=-++..+-. |.++.|+-=.+--... -...+..+ ..++....+..+...+.+.+.
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~Gh---G~rv~vvQFiKg~~~~GE~~~~~~~--~~~v~~~~~~~g~tw~~~~~~--- 101 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGH---GLRVGVVQFIKGGWKYGEEAALEKF--GLGVEFHGMGEGFTWETQDRE--- 101 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcC---CCEEEEEEEeecCcchhHHHHHHhh--ccceeEEecCCceeCCCcCcH---
Confidence 36777889999998887767666544 4566665422211111 11122222 122222222222111111000
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc--HHHHHHHHhhCCCCccEEEEEeecChhHHHHHHh
Q 022724 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (293)
Q Consensus 151 ~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~--~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~ 226 (293)
.++ ..+......... .+.-..++++|+||+...+..++ .+.+..++...|...-+|+.--..|+.+.+.+..
T Consensus 102 -~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 102 -ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred -HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 011 112222211111 12223678999999999887765 3556667776666666776666678877776543
No 415
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.19 E-value=0.65 Score=40.73 Aligned_cols=41 Identities=10% Similarity=0.267 Sum_probs=24.1
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
....+++||||+|.+.... ...+...+..-+....+|+.+.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 3567899999999985432 2233334444344555665443
No 416
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.14 E-value=0.17 Score=49.46 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=28.9
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHh--hhcCCcEEEEcCCCChhHHHH
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~--i~~~~~~li~~~Tg~GKT~~~ 87 (293)
.+|++.+-.+.+.+.+.+. +..|..++. .+.. +...+.+++.||+|+|||+.+
T Consensus 450 ~~~~di~g~~~~k~~l~~~-v~~~~~~~~-~~~~~g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREA-VEWPLKHPE-IFEKMGIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cchhhcccHHHHHHHHHHH-HHhhhhCHH-HHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 4566666666666666542 111111111 1111 123467999999999999543
No 417
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.14 E-value=0.51 Score=43.74 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=40.6
Q ss_pred HHHHhhhc-----CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 62 RAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 62 ~~~~~i~~-----~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
..++.++. |--+++.||+|+|||...+-.+...+.. +.+++|++ ..+-..|+..+++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 44566554 3579999999999996554444443332 44677776 5677788888887664
No 418
>PRK08506 replicative DNA helicase; Provisional
Probab=94.13 E-value=0.59 Score=43.14 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=55.7
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE-ECCcchHH----
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGE---- 143 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~---- 143 (293)
.|.-+++.|.+|+|||...+-.+.+ ... .+..++|++.- .-..|+..++-.... ++....+ .+..+..+
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~-~~~--~g~~V~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~~~ 264 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALK-ALN--QDKGVAFFSLE-MPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEWERL 264 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHH-HHh--cCCcEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHHH
Confidence 4567888999999999544433333 322 24456666543 334555554433222 2211111 12212111
Q ss_pred --HHHHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 144 --DIRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 144 --~~~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
....+.+. .+.|- |+..+...++.-......+++||||=.+.+.
T Consensus 265 ~~a~~~l~~~-~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 265 SDACDELSKK-KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHcC-CeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 11222233 34442 4555554443311112357999999999885
No 419
>PRK08840 replicative DNA helicase; Provisional
Probab=94.12 E-value=0.86 Score=41.96 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=67.5
Q ss_pred hhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE-ECCcchHHH
Q 022724 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGED 144 (293)
Q Consensus 66 ~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 144 (293)
-+..|.-+++.|.+|+|||.-. +-+....... .+..++|+..-.. ..|+..++-.... ++....+ .|..+..+.
T Consensus 213 G~~~g~LiviaarPg~GKTafa-lnia~~~a~~-~~~~v~~fSlEMs-~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~ 287 (464)
T PRK08840 213 GLQGSDLIIVAARPSMGKTTFA-MNLCENAAMD-QDKPVLIFSLEMP-AEQLMMRMLASLS--RVDQTKIRTGQLDDEDW 287 (464)
T ss_pred CCCCCceEEEEeCCCCchHHHH-HHHHHHHHHh-CCCeEEEEeccCC-HHHHHHHHHHhhC--CCCHHHHhcCCCCHHHH
Confidence 3445567888899999999443 3333333211 1335666654322 3444444432211 1111111 111121111
Q ss_pred ------HHHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhhccc----cHHHHHHHHhhCC-----
Q 022724 145 ------IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP----- 204 (293)
Q Consensus 145 ------~~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~----~~~~~~~i~~~l~----- 204 (293)
...+.+...+.|- |+..+....+.-......+++||||-.|.+...+ ....+..+-+.+.
T Consensus 288 ~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke 367 (464)
T PRK08840 288 ARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKE 367 (464)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 1122122345443 3444443332211112357999999999884222 1222333333332
Q ss_pred CCccEEEEEeecChh
Q 022724 205 PDLQVVLISATLPHE 219 (293)
Q Consensus 205 ~~~q~v~~SAt~~~~ 219 (293)
.++.++++| -++..
T Consensus 368 l~ipVi~Ls-QLnR~ 381 (464)
T PRK08840 368 LNVPVVALS-QLNRS 381 (464)
T ss_pred hCCeEEEEE-ecCcc
Confidence 256777776 44443
No 420
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.09 E-value=0.45 Score=47.33 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.|.++.||+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999554
No 421
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.49 Score=43.53 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHh-------hhc-C----CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEE
Q 022724 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMP-------IIK-G----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (293)
Q Consensus 38 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-------i~~-~----~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~l 105 (293)
+|.+++.++.+...|.-.-.+.=.+.+.. +.. . ..+++.||.|+|||.-+ ..+.....-|.+=
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA-----A~iA~~S~FPFvK 568 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA-----AKIALSSDFPFVK 568 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHH-----HHHHhhcCCCeEE
Confidence 57888888887766554333333333321 111 1 36899999999999322 2222233456677
Q ss_pred EEcC
Q 022724 106 ILSP 109 (293)
Q Consensus 106 il~P 109 (293)
++.|
T Consensus 569 iiSp 572 (744)
T KOG0741|consen 569 IISP 572 (744)
T ss_pred EeCh
Confidence 7777
No 422
>PRK08006 replicative DNA helicase; Provisional
Probab=94.00 E-value=1.2 Score=41.03 Aligned_cols=147 Identities=20% Similarity=0.193 Sum_probs=68.6
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEE-CCcchHHH-
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV-GGKSVGED- 144 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 144 (293)
+..|.-++|.|.+|+|||. |++-+...+... .+..++|++.- --..|+..++-..... +....+. +..+..+.
T Consensus 221 l~~G~LiiIaarPgmGKTa-falnia~~~a~~-~g~~V~~fSlE-M~~~ql~~Rlla~~~~--v~~~~i~~~~l~~~e~~ 295 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTT-FAMNLCENAAML-QDKPVLIFSLE-MPGEQIMMRMLASLSR--VDQTRIRTGQLDDEDWA 295 (471)
T ss_pred CCCCcEEEEEeCCCCCHHH-HHHHHHHHHHHh-cCCeEEEEecc-CCHHHHHHHHHHHhcC--CCHHHhhcCCCCHHHHH
Confidence 3345667888999999994 444443333211 13356666543 2234444444322211 1111111 22222211
Q ss_pred -----HHHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhhcc----ccHHHHHHHHhhCC-----C
Q 022724 145 -----IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLP-----P 205 (293)
Q Consensus 145 -----~~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~----~~~~~~~~i~~~l~-----~ 205 (293)
...+.....+.|- |+..+....+.-......+++||||=.|.+... .....+..+-+.+. .
T Consensus 296 ~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 375 (471)
T PRK08006 296 RISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL 375 (471)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 1122123345543 455554443321111235899999999988422 12223344433332 2
Q ss_pred CccEEEEEeecChh
Q 022724 206 DLQVVLISATLPHE 219 (293)
Q Consensus 206 ~~q~v~~SAt~~~~ 219 (293)
++.+|++| -++..
T Consensus 376 ~ipVi~Ls-QLnR~ 388 (471)
T PRK08006 376 QVPVVALS-QLNRS 388 (471)
T ss_pred CCeEEEEE-ecCcc
Confidence 56778776 34443
No 423
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.96 E-value=0.11 Score=41.45 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhh
Q 022724 55 KPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (293)
Q Consensus 55 ~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l 95 (293)
..++-|...+.. +..|.+++++||||+|||... -.++..+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 456667776665 446889999999999999543 2344443
No 424
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.037 Score=47.36 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=33.0
Q ss_pred ccCcccCCCCHHHHHHHHHC--CCC--------CCcHHHHHHHHh-----h-hcCCcEEEEcCCCChhHHHHH
Q 022724 32 ITSFDAMGIKDDLLRGIYQY--GFE--------KPSAIQQRAVMP-----I-IKGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~--~~~--------~~~~~Q~~~~~~-----i-~~~~~~li~~~Tg~GKT~~~~ 88 (293)
..+.+++|-|.+|.+.|.+. |-. ..+.+-++.-.. + ++.-|+++.||||||||+.+.
T Consensus 43 ~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 43 EKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred chhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHH
Confidence 34666788888888888552 111 111122221111 1 123489999999999996543
No 425
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.95 E-value=0.41 Score=38.40 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=25.5
Q ss_pred CccEEEecchhhhhccc-cH----HHHHHHHhhCCC-CccEEEEEeecChhHHHHHHh
Q 022724 175 AIKLLVLDESDEMLSRG-FK----DQIYDVYRYLPP-DLQVVLISATLPHEILEMTTK 226 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~-~~----~~~~~i~~~l~~-~~q~v~~SAt~~~~~~~~~~~ 226 (293)
.-.++||||||.+.... .. ......+...+. ...++++|-.+. .+...++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~-~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPS-QIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GG-GB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHH-HHhHHHHH
Confidence 45799999999986442 21 122244444443 456777766653 34444443
No 426
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.95 E-value=0.19 Score=41.23 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=26.7
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccC---CCceeEEEEcCCH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTR 111 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~---~~~~~~lil~P~~ 111 (293)
.|.-+.|.||+|+|||...+..+....... .....++++....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 356789999999999965554443333221 0124678877643
No 427
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.95 E-value=0.65 Score=42.62 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=54.7
Q ss_pred HHHHhhhc-----CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEE
Q 022724 62 RAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (293)
Q Consensus 62 ~~~~~i~~-----~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (293)
.-++.++. |.-+++.|++|+|||...+..+ ..+... +.+++|+... +-..|+..+..++.-.. .-..+.
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a-~~~a~~--g~kvlYvs~E-Es~~qi~~ra~rlg~~~--~~l~~~ 154 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVA-CQLAKN--QMKVLYVSGE-ESLQQIKMRAIRLGLPE--PNLYVL 154 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHH-HHHHhc--CCcEEEEECc-CCHHHHHHHHHHcCCCh--HHeEEc
Confidence 34455553 4678999999999996544333 333322 3468888753 44567666555543111 000000
Q ss_pred CCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 137 GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 137 ~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
.. .+.+.+...+.. .+.+++|||.+..+.
T Consensus 155 ~e------------------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 155 SE------------------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred CC------------------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 00 134455554433 346799999998874
No 428
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.94 E-value=0.22 Score=43.87 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHHHHHCCCCCCcHHHHHHHHhhh-cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 45 LRGIYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~i~-~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
++.+.+.|+ +++.+...+..+. .+++++++|+||+|||.. +-.++..+.. ..+.+.+-...|+
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~---~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAP---DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCC---CCcEEEECCccee
Confidence 445555554 4456666666544 567999999999999943 3334444432 2356666666665
No 429
>PRK07004 replicative DNA helicase; Provisional
Probab=93.93 E-value=0.56 Score=43.14 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=63.6
Q ss_pred hcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE-ECCcchHHH--
Q 022724 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGED-- 144 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 144 (293)
..|.-+++.|.+|+|||.- ++-+...+... .+..+++++.- --..|+..++-.... ++....+ .|..+..+.
T Consensus 211 ~~g~liviaarpg~GKT~~-al~ia~~~a~~-~~~~v~~fSlE-M~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~~ 285 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAF-SMNIGEYVAVE-YGLPVAVFSME-MPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWPK 285 (460)
T ss_pred CCCceEEEEeCCCCCccHH-HHHHHHHHHHH-cCCeEEEEeCC-CCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHHH
Confidence 3456788899999999944 33333332211 13345555532 223344333321111 1111111 122121111
Q ss_pred ----HHHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhhccc----cHHHHHHHHhhCC-----CC
Q 022724 145 ----IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----PD 206 (293)
Q Consensus 145 ----~~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~----~~~~~~~i~~~l~-----~~ 206 (293)
...+.+ ..+.|. |+..+....++-......+++||||=.+.+...+ ....+..+.+.+. .+
T Consensus 286 ~~~a~~~l~~-~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ 364 (460)
T PRK07004 286 LTHAVQKMSE-AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELD 364 (460)
T ss_pred HHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 122222 345552 4444444332211112357899999999985321 2223333333332 25
Q ss_pred ccEEEEEe
Q 022724 207 LQVVLISA 214 (293)
Q Consensus 207 ~q~v~~SA 214 (293)
+.++++|.
T Consensus 365 ipVi~lsQ 372 (460)
T PRK07004 365 VPVIALSQ 372 (460)
T ss_pred CeEEEEec
Confidence 67777754
No 430
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=93.91 E-value=0.35 Score=40.55 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=21.0
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhcc
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~ 97 (293)
+..|+.+++.||.|+|||.. +-.+++.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL-LQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhcccc
Confidence 34789999999999999943 2334444433
No 431
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.88 E-value=1.5 Score=37.20 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=16.9
Q ss_pred HHhhh-cC--CcEEEEcCCCChhHH
Q 022724 64 VMPII-KG--RDVIAQAQSGTGKTS 85 (293)
Q Consensus 64 ~~~i~-~~--~~~li~~~Tg~GKT~ 85 (293)
++.+. ++ +++++.||+|+|||.
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKtt 126 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTT 126 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHH
Confidence 44444 33 689999999999994
No 432
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.32 Score=46.40 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
+...+++||||+|.+.... ...+...+..-+....+|+.+
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999985432 223334444434444444443
No 433
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=93.87 E-value=0.76 Score=44.17 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHC---CCCCCcHHHHHHHHhhh--cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHH
Q 022724 40 IKDDLLRGIYQY---GFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (293)
Q Consensus 40 l~~~i~~~l~~~---~~~~~~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~ 114 (293)
+-+.+.+.++-. |+..++.-=.+.+.... +|-..|+.-..|-|||+-.. ..++.+.+.-....+++++|-..|
T Consensus 247 lapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVi-sF~diflRhT~AKtVL~ivPiNTl- 324 (1387)
T KOG1016|consen 247 LAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVI-SFSDIFLRHTKAKTVLVIVPINTL- 324 (1387)
T ss_pred ehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEe-ehhHHHhhcCccceEEEEEehHHH-
Confidence 455666666432 45555555455555543 45678888999999995422 223333344445689999996665
Q ss_pred HHHHHHHHHhhcc----C-----CceEEEEECCcchHHH-HHHH---hcCCcEEEeChHHHHHHHhc-----CC------
Q 022724 115 TQTEKVILAIGDF----I-----NIQAHACVGGKSVGED-IRKL---EHGVHVVSGTPGRVCDMIKR-----KT------ 170 (293)
Q Consensus 115 ~q~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~-~~~~---~~~~~ilV~Tp~~l~~~l~~-----~~------ 170 (293)
..++..+..|... . .+.+..+.++.....+ .+-+ -..-.|+..-.+.+--+... +.
T Consensus 325 QNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~k 404 (1387)
T KOG1016|consen 325 QNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLK 404 (1387)
T ss_pred HHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCcccccc
Confidence 3344445444332 1 2456666666443332 2222 22224555555444222111 00
Q ss_pred ------CC-------------------CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHH
Q 022724 171 ------LR-------------------TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEM 223 (293)
Q Consensus 171 ------~~-------------------~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~ 223 (293)
++ -...+++|.||-|.+-. ....+...++.++.++++|+....+-+.+.++
T Consensus 405 r~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN--~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEY 480 (1387)
T KOG1016|consen 405 RISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKN--ITAEISMALKAIRTRRRIVLTGYPLQNNLLEY 480 (1387)
T ss_pred ccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceecc--chHHHHHHHHHhhhceeEEEeccccccchHHH
Confidence 00 02358899999999833 34445566677777788888888887665543
No 434
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.86 E-value=0.11 Score=42.05 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=23.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
-++++||||||||... ..++..+.... +.+++.+-...+
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcCCcc
Confidence 3789999999999653 34455554332 235555554333
No 435
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.83 E-value=1.4 Score=38.24 Aligned_cols=129 Identities=20% Similarity=0.345 Sum_probs=70.2
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC--CHHHHHHHHHHHHHhhccCCceEEEE-ECCcchHHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHAC-VGGKSVGEDIRKL 148 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P--~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (293)
-++++|-.|+|||....=.+ +.+... |.++++.+- .|+-|.++.+.| ....|..+..- .|+.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA-~~l~~~--g~~VllaA~DTFRAaAiEQL~~w---~er~gv~vI~~~~G~D--------- 205 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLA-KYLKQQ--GKSVLLAAGDTFRAAAIEQLEVW---GERLGVPVISGKEGAD--------- 205 (340)
T ss_pred EEEEEecCCCchHhHHHHHH-HHHHHC--CCeEEEEecchHHHHHHHHHHHH---HHHhCCeEEccCCCCC---------
Confidence 47889999999997643222 222222 445665553 377766665544 44556655542 1222
Q ss_pred hcCCcEEEeChHHHH-HHHhcCCCCCCCccEEEecchhhhhcc-ccHHHHHHHHhhCCCCc------cEEEEEeecChhH
Q 022724 149 EHGVHVVSGTPGRVC-DMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDL------QVVLISATLPHEI 220 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l~-~~l~~~~~~~~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l~~~~------q~v~~SAt~~~~~ 220 (293)
|..+. +.+.. -..++++++++|=|-++... .....+..+.+-+.+.. -++.+-||...+.
T Consensus 206 ----------pAaVafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna 273 (340)
T COG0552 206 ----------PAAVAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA 273 (340)
T ss_pred ----------cHHHHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH
Confidence 22111 11111 11355677888877776543 34555666666665433 3555589987765
Q ss_pred HHHHHhc
Q 022724 221 LEMTTKF 227 (293)
Q Consensus 221 ~~~~~~~ 227 (293)
.+.++.+
T Consensus 274 l~QAk~F 280 (340)
T COG0552 274 LSQAKIF 280 (340)
T ss_pred HHHHHHH
Confidence 5544443
No 436
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.80 E-value=0.97 Score=40.11 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=27.6
Q ss_pred HHHHHHHHhhh---cCCcEEEEcCCCChhHHHHHHHHHhhhcc
Q 022724 58 AIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (293)
Q Consensus 58 ~~Q~~~~~~i~---~~~~~li~~~Tg~GKT~~~~~~~~~~l~~ 97 (293)
.+-.++++.+. +|+..+|.||.|+|||... .-+...+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl-~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL-QQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH-HHHHHHHHh
Confidence 45566888766 7889999999999999543 234444443
No 437
>PRK08760 replicative DNA helicase; Provisional
Probab=93.78 E-value=0.77 Score=42.44 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=55.0
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHH----
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---- 144 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 144 (293)
.|.-++|.|.+|+|||...+ -+....... .+..++|++.-. -..|+..++..........- ...|..+..+.
T Consensus 228 ~G~LivIaarPg~GKTafal-~iA~~~a~~-~g~~V~~fSlEM-s~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~~~ 303 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFAL-NIAEYAAIK-SKKGVAVFSMEM-SASQLAMRLISSNGRINAQR-LRTGALEDEDWARVT 303 (476)
T ss_pred CCceEEEEeCCCCChhHHHH-HHHHHHHHh-cCCceEEEeccC-CHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHHHH
Confidence 45668889999999995443 333333211 133566665432 23455555544332222111 01122111111
Q ss_pred --HHHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 145 --IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 145 --~~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
...+.+ ..+.|. |++.+...++.-.. -..+++||||=.+.+.
T Consensus 304 ~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 304 GAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 122222 344443 45555544433111 1347999999999884
No 438
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.78 E-value=0.041 Score=49.32 Aligned_cols=47 Identities=21% Similarity=0.144 Sum_probs=36.1
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
+++++||||+|||.++++|-+-.. +..+||+=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHH
Confidence 579999999999999887765432 23578888988888877766554
No 439
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.77 E-value=2 Score=43.30 Aligned_cols=162 Identities=12% Similarity=0.152 Sum_probs=111.6
Q ss_pred cccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhh---------
Q 022724 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV--------- 95 (293)
Q Consensus 25 ~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l--------- 95 (293)
+..-....-.|.++||- |++.=+++|. -|++-+..+...-|++--..|--=.|+-..+..+..+
T Consensus 704 THrLL~kdv~FkdLGLl--IIDEEqRFGV-----k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~ 776 (1139)
T COG1197 704 THRLLSKDVKFKDLGLL--IIDEEQRFGV-----KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED 776 (1139)
T ss_pred chHhhCCCcEEecCCeE--EEechhhcCc-----cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC
Confidence 33334445567777653 3333344444 3677777777777888888888778866554444333
Q ss_pred ---------------------ccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hc
Q 022724 96 ---------------------DTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EH 150 (293)
Q Consensus 96 ---------------------~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 150 (293)
..-.+|+++.|+.|..+-..++.+.++.+-. ..++...||.+...+..+.. ..
T Consensus 777 R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g 854 (1139)
T COG1197 777 RLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNG 854 (1139)
T ss_pred CcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcC
Confidence 1113578999999999999999999998865 46789999998876654433 35
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCC
Q 022724 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (293)
Q Consensus 151 ~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~ 205 (293)
..||+|||- .+ ...++..+-..||||.||++. ..++..+..+...
T Consensus 855 ~~dVLv~TT-----II-EtGIDIPnANTiIIe~AD~fG----LsQLyQLRGRVGR 899 (1139)
T COG1197 855 EYDVLVCTT-----II-ETGIDIPNANTIIIERADKFG----LAQLYQLRGRVGR 899 (1139)
T ss_pred CCCEEEEee-----ee-ecCcCCCCCceEEEecccccc----HHHHHHhccccCC
Confidence 789999994 33 345889999999999999974 3445555555543
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.75 E-value=0.15 Score=44.34 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCChhHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~ 86 (293)
+..+.+++++||||+|||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44688999999999999953
No 441
>PRK10436 hypothetical protein; Provisional
Probab=93.75 E-value=0.17 Score=46.42 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=29.7
Q ss_pred HHHCCCCCCcHHHHHHHHhhh--cCCcEEEEcCCCChhHHHHHHHHHhhhcc
Q 022724 48 IYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (293)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~~~~~~~~~l~~ 97 (293)
|.++|+ .+.|.+.+..+. .+.-++++||||||||... ..++..+..
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 445553 455666666554 3457999999999999653 345555543
No 442
>PRK06321 replicative DNA helicase; Provisional
Probab=93.71 E-value=0.89 Score=41.94 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=56.5
Q ss_pred HHHhhhc----CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE-EC
Q 022724 63 AVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VG 137 (293)
Q Consensus 63 ~~~~i~~----~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~ 137 (293)
.++.+.. |.-++|.|.+|+|||.- .+-+...+... .+..++|++. .--..|+..++-.... ++....+ .+
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTaf-al~ia~~~a~~-~g~~v~~fSL-EMs~~ql~~Rlla~~s--~v~~~~i~~~ 289 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTAL-ALNIAENFCFQ-NRLPVGIFSL-EMTVDQLIHRIICSRS--EVESKKISVG 289 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHH-HHHHHHHHHHh-cCCeEEEEec-cCCHHHHHHHHHHhhc--CCCHHHhhcC
Confidence 3455443 45578889999999944 44444443221 1334556553 2223444444432221 2221111 12
Q ss_pred CcchHHH------HHHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 138 GKSVGED------IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 138 ~~~~~~~------~~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
..+..+. ...+.+. .+.|- |.+.+...++.-.. -..+++||||=.+.+.
T Consensus 290 ~l~~~e~~~~~~a~~~l~~~-~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 290 DLSGRDFQRIVSVVNEMQEH-TLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred CCCHHHHHHHHHHHHHHHcC-CEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 2221111 1222232 45553 44455444333111 1347899999999885
No 443
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.70 E-value=0.17 Score=46.85 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=30.3
Q ss_pred HHHHCCCCCCcHHHHHHHHhhhcC-C-cEEEEcCCCChhHHHHHHHHHhhhcc
Q 022724 47 GIYQYGFEKPSAIQQRAVMPIIKG-R-DVIAQAQSGTGKTSMIALTVCQTVDT 97 (293)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~i~~~-~-~~li~~~Tg~GKT~~~~~~~~~~l~~ 97 (293)
.|.++|+ .+-|.+.+..+... + -++++||||||||... -.++..+..
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~ 268 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNT 268 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCC
Confidence 3455554 46677777766543 3 4789999999999543 345565543
No 444
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.69 E-value=0.14 Score=45.26 Aligned_cols=43 Identities=9% Similarity=0.268 Sum_probs=27.1
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
.+..++++||||||||... -.++..+.... +.+++.+-...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~~-~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKNA-AGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcCC-CCEEEEEcCChhh
Confidence 4578999999999999543 34455554332 3356666544443
No 445
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.69 E-value=0.12 Score=45.53 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=22.2
Q ss_pred EEeChHHHHHHHhcCCC----CCCCccEEEecchhhhhc
Q 022724 155 VSGTPGRVCDMIKRKTL----RTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 155 lV~Tp~~l~~~l~~~~~----~~~~l~~iViDE~h~~~~ 189 (293)
.++-|+++++.+....- .-...+.|+|||+|.+..
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g 226 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAG 226 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCC
Confidence 44666777664433211 124578999999998753
No 446
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.65 E-value=1.1 Score=35.32 Aligned_cols=52 Identities=21% Similarity=0.449 Sum_probs=39.7
Q ss_pred CCCccEEEecchhhhhcccc--HHHHHHHHhhCCCCccEEEEEeecChhHHHHH
Q 022724 173 TRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~--~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~ 224 (293)
-..++++|+||+-...+.++ ...+..+++..+...-+|+.--..|+.+.+.+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 35678999999998887775 45677778877777777777777788776655
No 447
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.65 E-value=0.42 Score=44.21 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=13.8
Q ss_pred EEEEcCCCChhHHHHHH
Q 022724 73 VIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~~~ 89 (293)
+++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999966543
No 448
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.60 E-value=1.1 Score=40.82 Aligned_cols=140 Identities=18% Similarity=0.142 Sum_probs=64.9
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHH----
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---- 144 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 144 (293)
.|.-++|.|++|+|||...+--+.+..... +..+++++.- .-..++..++..........-. ..|.....+.
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~~-~~g~l~~~~~~~~~ 269 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLE-MSAEQLAMRMLSSESRVDSQKL-RTGKLSDEDWEKLT 269 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHh-ccCCCCHHHHHHHH
Confidence 456788999999999954333333322222 3356666543 2344554444333222211111 1121121111
Q ss_pred --HHHHhcCCcEEE-e----ChHHHHHHHhcCCCCCCCccEEEecchhhhhccc----cHHHHHHHHhhCC-----CCcc
Q 022724 145 --IRKLEHGVHVVS-G----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----PDLQ 208 (293)
Q Consensus 145 --~~~~~~~~~ilV-~----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~----~~~~~~~i~~~l~-----~~~q 208 (293)
...+.+ ..+.| . |++.+...++.-... ..+++||||=.+.+.... ....+..+.+.+. .++.
T Consensus 270 ~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~ 347 (434)
T TIGR00665 270 SAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVP 347 (434)
T ss_pred HHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCe
Confidence 122223 23444 2 455555443321111 247899999999874222 2223333333332 3566
Q ss_pred EEEEEe
Q 022724 209 VVLISA 214 (293)
Q Consensus 209 ~v~~SA 214 (293)
++++|.
T Consensus 348 vi~lsq 353 (434)
T TIGR00665 348 VIALSQ 353 (434)
T ss_pred EEEEec
Confidence 776664
No 449
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.57 E-value=0.093 Score=45.36 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChhHHH
Q 022724 71 RDVIAQAQSGTGKTSM 86 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~ 86 (293)
.++++.||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4799999999999944
No 450
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.57 E-value=0.51 Score=41.43 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=29.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
.++++.||.|+|||..+-+.+-. . ....-+-|=+..+.+-+.++...+++
T Consensus 163 pSmIlWGppG~GKTtlArlia~t--s-k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAST--S-KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhh--c-CCCceEEEEEeccccchHHHHHHHHH
Confidence 37999999999999543322211 1 11123556666677666666665543
No 451
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.55 E-value=0.39 Score=44.00 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=14.8
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
.+++.||.|+|||..+..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARI 58 (451)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999966543
No 452
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=93.39 E-value=1.2 Score=39.27 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=41.0
Q ss_pred CCccEEEecchhhhhccc--cHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecC
Q 022724 174 RAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~--~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~ 238 (293)
+.--++|+|-+|.+-|.+ ....+..+-..++...-.+.+|++..+... .......++..+.++.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y-~~n~g~~~i~~l~fP~ 179 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQY-LINTGTLEIVVLHFPQ 179 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHh-hcccCCCCceEEecCC
Confidence 445689999999997654 344555566666666667788888877532 2222334566666654
No 453
>PRK13695 putative NTPase; Provisional
Probab=93.29 E-value=1.3 Score=34.67 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=14.2
Q ss_pred cEEEEcCCCChhHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~ 88 (293)
.+++.|+.|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999996544
No 454
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.28 E-value=0.75 Score=45.02 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.|+++.||+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999554
No 455
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.23 E-value=0.086 Score=48.60 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=37.2
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.++++.||||||||..+.+|.+-. .+ + -+||.=|--++.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~~-~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---YP-G-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---cc-C-CEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999998887632 21 2 5677778888888777766554
No 456
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.21 E-value=0.6 Score=40.51 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=40.5
Q ss_pred CCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 53 ~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
+.--++-|..=+.++.+..-++..||-|+|||.-......+.+....- .++|.-=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v-~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQV-RRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhccc-ceeeecCc
Confidence 445688999988888888888999999999997766666666655432 23443335
No 457
>PRK09165 replicative DNA helicase; Provisional
Probab=93.18 E-value=0.61 Score=43.36 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=55.5
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccC------------CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEE
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS------------SREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~------------~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (293)
.|.-++|.|++|+|||.-.+-.+.+..... ..+..++|++. ..-..|+..++-........ ..+.
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~--~~i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISS--SKIR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCH--HHHh
Confidence 345688899999999954433332222111 12445666653 33345666655433222211 1111
Q ss_pred CCcchHHHH-------HHHhcCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 137 GGKSVGEDI-------RKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 137 ~~~~~~~~~-------~~~~~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
.+.-...+. ..+.+ ..+.|- |++.+...+++-.. -..+++||||=.+.+.
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~-~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQK-LPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhc-CCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 121111111 12222 234443 45555544433111 1357999999999885
No 458
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.14 E-value=0.055 Score=44.69 Aligned_cols=14 Identities=21% Similarity=0.729 Sum_probs=12.0
Q ss_pred EEEEcCCCChhHHH
Q 022724 73 VIAQAQSGTGKTSM 86 (293)
Q Consensus 73 ~li~~~Tg~GKT~~ 86 (293)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999964
No 459
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.08 E-value=0.24 Score=46.84 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=29.9
Q ss_pred HHHCCCCCCcHHHHHHHHhhhc--CCcEEEEcCCCChhHHHHHHHHHhhhc
Q 022724 48 IYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVD 96 (293)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~i~~--~~~~li~~~Tg~GKT~~~~~~~~~~l~ 96 (293)
+.++|+ .+.|.+.+..+.. +..++++||||||||... ..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 455664 4566666666543 456889999999999653 34556554
No 460
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.06 E-value=0.11 Score=44.08 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=20.3
Q ss_pred HHHhhhcCCcEEEEcCCCChhHHHHH
Q 022724 63 AVMPIIKGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 63 ~~~~i~~~~~~li~~~Tg~GKT~~~~ 88 (293)
+...+..|+++++.||+|+|||..+.
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 33445578999999999999996654
No 461
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.28 Score=48.74 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=77.6
Q ss_pred cccCcccCCCCHHHHHHHHHCCCC-CCcHHHHHHHH-hhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFE-KPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~-~~~~~Q~~~~~-~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
....|++.|....+.+-|+++-.. -.+|-+.+ + .+..-+.++++||.|+|||+.+-.-+ ........ ++-+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~--~~~itpPrgvL~~GppGTGkTl~araLa-~~~s~~~~--kisf-- 332 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFD--NFNITPPRGVLFHGPPGTGKTLMARALA-AACSRGNR--KISF-- 332 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhh--hcccCCCcceeecCCCCCchhHHHHhhh-hhhccccc--ccch--
Confidence 345789998888888888887432 22221111 1 13345779999999999996532111 11111000 0000
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
..++ | ...-..-|+.+++=++++.... .-.....+-+||+|-+.
T Consensus 333 -----------fmrk-----g-------------------aD~lskwvgEaERqlrllFeeA-~k~qPSIIffdeIdGla 376 (1080)
T KOG0732|consen 333 -----------FMRK-----G-------------------ADCLSKWVGEAERQLRLLFEEA-QKTQPSIIFFDEIDGLA 376 (1080)
T ss_pred -----------hhhc-----C-------------------chhhccccCcHHHHHHHHHHHH-hccCceEEecccccccc
Confidence 0000 0 0011345677776666654421 12445778899999542
Q ss_pred cc----------ccHHHHHHHHhhCCCCccEEEEEeec
Q 022724 189 SR----------GFKDQIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 189 ~~----------~~~~~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
-. .....+..+..-+....|+++++||-
T Consensus 377 pvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 377 PVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred ccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 11 12233344444556789999999996
No 462
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.36 Score=45.32 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=34.4
Q ss_pred ccccCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
.+-.+|++.|=-+++...|++. ...+|-.+.... +..-+.+++.||.|+|||+.+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 3456788887556666666542 222333332222 234478999999999999654
No 463
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=92.96 E-value=0.19 Score=51.42 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=45.3
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccC--CCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~--~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
.+++++|.|..|||||.+..--++..+... -.-.++++++-|++-+.++..++..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 567999999999999988777777777663 2335899999999999999888864
No 464
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.95 E-value=0.56 Score=48.03 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=60.4
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.+++|++|+++-+..+.+.+++... +.++..+||+.+..+..+.+ ....+|+|+|. .+ ...+++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Ii-erGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hh-hcccccccC
Confidence 45899999999988888888887643 46788899998776544333 25679999995 22 236889999
Q ss_pred cEEEecchhhh
Q 022724 177 KLLVLDESDEM 187 (293)
Q Consensus 177 ~~iViDE~h~~ 187 (293)
+++|++.+|++
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999998864
No 465
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.93 E-value=0.17 Score=42.01 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=23.9
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
-.++|+|++||||| .++.-++..+...- ..+++++|
T Consensus 14 fr~viIG~sGSGKT-~li~~lL~~~~~~f--~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKT-TLIKSLLYYLRHKF--DHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHH-HHHHHHHHhhcccC--CEEEEEec
Confidence 37999999999999 44555555544432 34555566
No 466
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.92 E-value=1.6 Score=43.36 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.|.++.||.|+|||...
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 58999999999999544
No 467
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.88 E-value=0.71 Score=42.59 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=59.7
Q ss_pred HHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh----cCCcEEEeChHHHH
Q 022724 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVC 163 (293)
Q Consensus 88 ~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~ 163 (293)
+..++..+. ...+.++||.|.|+--|+++...++.. +.++..+||+.+..+....+. ..+.|+|+|.
T Consensus 329 l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd---- 399 (519)
T KOG0331|consen 329 LGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD---- 399 (519)
T ss_pred HHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc----
Confidence 444555555 334568999999999999999877653 367889999987766655553 4578999995
Q ss_pred HHHhcCCCCCCCccEEEe
Q 022724 164 DMIKRKTLRTRAIKLLVL 181 (293)
Q Consensus 164 ~~l~~~~~~~~~l~~iVi 181 (293)
+..+.+++.+++++|-
T Consensus 400 --VAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 400 --VAARGLDVPDVDLVIN 415 (519)
T ss_pred --cccccCCCccccEEEe
Confidence 2334677888888764
No 468
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.87 E-value=0.41 Score=40.80 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=32.7
Q ss_pred ccEEEecchhhhhccccHHHHHHHHhhCC-------CCccEEEEEeecChhHHHHHHhc
Q 022724 176 IKLLVLDESDEMLSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTTKF 227 (293)
Q Consensus 176 l~~iViDE~h~~~~~~~~~~~~~i~~~l~-------~~~q~v~~SAt~~~~~~~~~~~~ 227 (293)
=.++|+||+|.|. .+..+.+.-++.+.+ .+.=+|++|-+-...+.+.....
T Consensus 179 rslFIFDE~DKmp-~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~ 236 (344)
T KOG2170|consen 179 RSLFIFDEVDKLP-PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALEN 236 (344)
T ss_pred CceEEechhhhcC-HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHH
Confidence 3689999999984 344445555555432 23458899988777666555443
No 469
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.81 E-value=0.073 Score=51.65 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
+++-+++|+||+-.-+|......+...+..+.+++.++..|
T Consensus 617 l~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiIt 657 (694)
T TIGR03375 617 LRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVT 657 (694)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 36678999999987777766666766666665455555544
No 470
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.75 E-value=0.58 Score=41.86 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccC-CCceeEEEEcC
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSP 109 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~-~~~~~~lil~P 109 (293)
.|.++++.|+||+||++.+. .++.+... ..+|.+-|=|-
T Consensus 100 ~~~~vLi~GetGtGKel~A~--~iH~~s~r~~~~PFI~~NCa 139 (403)
T COG1221 100 SGLPVLIIGETGTGKELFAR--LIHALSARRAEAPFIAFNCA 139 (403)
T ss_pred CCCcEEEecCCCccHHHHHH--HHHHhhhcccCCCEEEEEHH
Confidence 67899999999999997654 33444444 45666666553
No 471
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.72 E-value=0.38 Score=38.37 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=34.7
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhcc-------CCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDT-------SSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~-------~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
.|.-+++.||+|+|||...+-.+...... ...+.+++++..-.. ..++.+++..+...
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~ 95 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQD 95 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhcc
Confidence 56779999999999996544333333321 113457777776555 66777888776543
No 472
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=92.71 E-value=0.28 Score=46.86 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH--HHHHHHHHHHHHhh
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR--ELATQTEKVILAIG 125 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~--~l~~q~~~~~~~~~ 125 (293)
..|++|.|+||+|||..+.+.+.+.+.. +..++++=|-- ++...+...++..+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~---g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR---GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 3689999999999997775555555543 33566666764 47777777776654
No 473
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=92.66 E-value=0.18 Score=49.76 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=51.9
Q ss_pred ccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhC--CCCcEEEEcccchh
Q 022724 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRK 284 (293)
Q Consensus 207 ~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~--~~~~~iIF~~s~~~ 284 (293)
.++-+||.|......++..-|-.+...+-.. ......+... .++.... .|...+...+... .+.|+||||+|++.
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTn-rP~~R~D~~d-~vy~t~~-eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTN-KPIVRKDMDD-LVYKTRR-EKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCC-CCcceecCCC-eEecCHH-HHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 4688999998777666765554333222221 1111111121 2223333 4888888888543 56799999999999
Q ss_pred HHHHHhhC
Q 022724 285 VLLLVLQF 292 (293)
Q Consensus 285 a~~l~~~L 292 (293)
++.+++.|
T Consensus 611 sE~Ls~~L 618 (1025)
T PRK12900 611 SETLSRML 618 (1025)
T ss_pred HHHHHHHH
Confidence 99999876
No 474
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=92.66 E-value=0.22 Score=48.88 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=55.4
Q ss_pred CCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
++-.++|-|-+++-.-.+...+.++||+|+|||-... -++..+...-...+++|++.+..-.+|..+.+.++
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~av-qil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAV-QILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhh-hhhhhhhhcCCCcceEEEEecccchhHHHHHHHhc
Confidence 4456788999888877778899999999999995543 34444444444579999999999999998877654
No 475
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=92.64 E-value=0.18 Score=47.70 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=28.4
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
+++-+.+++||.-.-+|......+...+....++.-+|..|
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiit 525 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 35668899999988888777777776666664454455443
No 476
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.64 E-value=1.5 Score=38.14 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=31.9
Q ss_pred EEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 154 VVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 154 ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
|-|-....+.+.+....+ ....+++|||++|.|.... ...+...+..-+ +..+|+++.
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 333334445454444333 3578999999999985433 233344444444 555555544
No 477
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.64 E-value=0.18 Score=40.01 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=27.6
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCC-CccEEEEEe
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISA 214 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~-~~q~v~~SA 214 (293)
.+.+++++||...-++......+..++..+.. ..++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 56789999999988877666666555555433 355655543
No 478
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.86 Score=43.52 Aligned_cols=110 Identities=21% Similarity=0.327 Sum_probs=63.0
Q ss_pred CcHHHHHHHHhhh--------cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 56 PSAIQQRAVMPII--------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 56 ~~~~Q~~~~~~i~--------~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
...+-.++++.+. +|+-+.++||+|.|||.+. ..+.+.+.+ ++
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~---------------------------kSIA~ALnR--kF 466 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA---------------------------KSIARALNR--KF 466 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH---------------------------HHHHHHhCC--ce
Confidence 4455555665543 4677899999999999432 222222211 01
Q ss_pred CCceEEEEECCcchHHHHHHHhcCCcEEEe-ChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC
Q 022724 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSG-TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (293)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~-Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~ 204 (293)
.....||..-..+ ++...+-+|| -|+++.+.|+.-.... -++.|||+|.+.....++--..++..+.
T Consensus 467 ----fRfSvGG~tDvAe---IkGHRRTYVGAMPGkiIq~LK~v~t~N---PliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 467 ----FRFSVGGMTDVAE---IKGHRRTYVGAMPGKIIQCLKKVKTEN---PLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred ----EEEeccccccHHh---hcccceeeeccCChHHHHHHHhhCCCC---ceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 1123345433322 3333345555 6999999998743222 3789999999974444555555555553
No 479
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.59 E-value=1.2 Score=39.59 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
+.+++.||.|+|||....
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368999999999995544
No 480
>PRK05595 replicative DNA helicase; Provisional
Probab=92.58 E-value=1.3 Score=40.59 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=52.8
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
.|.-++|.|.||+|||... +-+...+... .+.+++++..- .-..|+..++-....... ...+..+.-...+...+
T Consensus 200 ~g~liviaarpg~GKT~~a-l~ia~~~a~~-~g~~vl~fSlE-ms~~~l~~R~~a~~~~v~--~~~~~~~~l~~~e~~~~ 274 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFA-LNIAEYAALR-EGKSVAIFSLE-MSKEQLAYKLLCSEANVD--MLRLRTGNLEDKDWENI 274 (444)
T ss_pred CCcEEEEEecCCCChHHHH-HHHHHHHHHH-cCCcEEEEecC-CCHHHHHHHHHHHhcCCC--HHHHhcCCCCHHHHHHH
Confidence 3456788899999999443 3333332211 13456666543 234455554433222221 11111111111111111
Q ss_pred h------cCCcEEEe-----ChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 149 E------HGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 149 ~------~~~~ilV~-----Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
. ....+.|- |++.+...++.-.. -..+++||||=.+.+.
T Consensus 275 ~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~ 324 (444)
T PRK05595 275 ARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMS 324 (444)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhcc
Confidence 1 11234332 34444443333111 1347899999999985
No 481
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=1.1 Score=43.47 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.9
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
++++.||||.|||..+
T Consensus 523 sFlF~GPTGVGKTELA 538 (786)
T COG0542 523 SFLFLGPTGVGKTELA 538 (786)
T ss_pred EEEeeCCCcccHHHHH
Confidence 7899999999999544
No 482
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.54 E-value=0.091 Score=44.71 Aligned_cols=20 Identities=50% Similarity=0.747 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCChhHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~ 86 (293)
+..+++++++||+|+|||..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHH
T ss_pred HHcCCcEEEECCCCCchhHH
Confidence 34678999999999999954
No 483
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.54 E-value=0.2 Score=47.92 Aligned_cols=155 Identities=23% Similarity=0.202 Sum_probs=91.5
Q ss_pred CCcHHHHHHHHhhh--------cCC--cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 55 KPSAIQQRAVMPII--------KGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~--------~~~--~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.++..|.+++-... +|. .++|--..|.||--...-.|++...+. ..++|.+.-+..|--+..+.++.+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG--RKrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG--RKRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc--cceeEEEEeccccccchhhchhhc
Confidence 57778887775433 232 456665556665533333355555554 348999999999988888888877
Q ss_pred hccCCceEEEEECC----cchHHHHHHHhcCCcEEEeChHHHHHHHhc--CC-----------CCCCCccEEEecchhhh
Q 022724 125 GDFINIQAHACVGG----KSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KT-----------LRTRAIKLLVLDESDEM 187 (293)
Q Consensus 125 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~--~~-----------~~~~~l~~iViDE~h~~ 187 (293)
+. +++.|..+..- .+.++. -.-.-.|+++|...|.---.. +. +--..=.+||+||+|..
T Consensus 342 gA-~~I~V~alnK~KYakIss~en---~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 342 GA-TGIAVHALNKFKYAKISSKEN---TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKA 417 (1300)
T ss_pred CC-CCccceehhhccccccccccc---CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhh
Confidence 53 34555443311 000000 001126899998766532211 00 00122378999999996
Q ss_pred hcc---------ccHHHHHHHHhhCCCCccEEEEEeec
Q 022724 188 LSR---------GFKDQIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 188 ~~~---------~~~~~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
-.. ..+.-+..+.+.++ +.++|.-|||=
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 321 24566667777775 78999999994
No 484
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=92.53 E-value=0.16 Score=48.08 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=26.9
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
++-+.+++||+-.-+|......+...+..+.++..+|..|-
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH 533 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAH 533 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56688999999887777666666555555544444554443
No 485
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.50 E-value=0.12 Score=33.00 Aligned_cols=19 Identities=21% Similarity=0.629 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|+.+++.+++|+|||..+
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3557999999999999543
No 486
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.49 E-value=0.76 Score=36.00 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=28.8
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
..+.+++++||.-.-+|......+..++..+... ..++++.
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~s 152 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIA 152 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence 3567899999998777777677777777766544 4444543
No 487
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.44 E-value=1.7 Score=36.10 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=31.1
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhc---------cCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVD---------TSSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~---------~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
-.++.||.|+|||+..+-.++.... ....+.+++|+.--. -..++.+++..+...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed-~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED-PREEIHRRLEAILQH 66 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC-CHHHHHHHHHHHHhh
Confidence 3689999999999665544433211 112345788887322 223455555555443
No 488
>PHA02535 P terminase ATPase subunit; Provisional
Probab=92.43 E-value=1.8 Score=40.69 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 119 (293)
+++.....|.+.....+.++|+..+..=...+.-++.-.=-.|||+.|..-++...... |...++|.|+++.+....+
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~--G~nqiflSas~~QA~~f~~ 200 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLT--GRNQIFLSASKAQAHVFKQ 200 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhc--CCceEEECCCHHHHHHHHH
Confidence 56667777776555689999999886522234445555566799998876665544442 4578999999999999888
Q ss_pred HHHHhhcc
Q 022724 120 VILAIGDF 127 (293)
Q Consensus 120 ~~~~~~~~ 127 (293)
.+..+.+.
T Consensus 201 yi~~~a~~ 208 (581)
T PHA02535 201 YIIAFARE 208 (581)
T ss_pred HHHHHHHh
Confidence 88777543
No 489
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.6 Score=41.63 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChhHHH
Q 022724 71 RDVIAQAQSGTGKTSM 86 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~ 86 (293)
+|+++-||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6999999999999954
No 490
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.34 E-value=1.5 Score=34.47 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
..+.+++++||.-.-+|......+..++..+... ..+++
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~ 152 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIW 152 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 3667899999998877776666666666666443 34444
No 491
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.34 E-value=0.84 Score=39.79 Aligned_cols=54 Identities=19% Similarity=0.449 Sum_probs=28.6
Q ss_pred CCccEEEecchhhhhcc-ccHHHHHHHHhhC------CCCccEEEEEeecChhHHHHHHhc
Q 022724 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYL------PPDLQVVLISATLPHEILEMTTKF 227 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~-~~~~~~~~i~~~l------~~~~q~v~~SAt~~~~~~~~~~~~ 227 (293)
.+.++||||=+-.+... .....+..+.+.. .+.-.++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 45678888877654322 2233444443322 233457888888765433334433
No 492
>PF14516 AAA_35: AAA-like domain
Probab=92.31 E-value=1.5 Score=38.52 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=36.5
Q ss_pred cHHHHHHHHhhhc-CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 57 SAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 57 ~~~Q~~~~~~i~~-~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
.|..++++..+.+ |..+.|.||-.+|||. .+..+.+.+... +-+++++-
T Consensus 17 ~~~e~~~~~~i~~~G~~~~I~apRq~GKTS-ll~~l~~~l~~~--~~~~v~id 66 (331)
T PF14516_consen 17 PPAEQECYQEIVQPGSYIRIKAPRQMGKTS-LLLRLLERLQQQ--GYRCVYID 66 (331)
T ss_pred hHHHHHHHHHHhcCCCEEEEECcccCCHHH-HHHHHHHHHHHC--CCEEEEEE
Confidence 3589999999987 9999999999999994 455566666554 34555543
No 493
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.29 E-value=0.097 Score=41.28 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=27.5
Q ss_pred HHHhcCCcEEEeChHHHHHHHhcCCC--CCCCccEEEecchhhhhcc
Q 022724 146 RKLEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 146 ~~~~~~~~ilV~Tp~~l~~~l~~~~~--~~~~l~~iViDE~h~~~~~ 190 (293)
+.....++|+|++...++.-.....+ ...+-.+|||||||.+.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 33345679999998777653222111 1234478999999998654
No 494
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.28 E-value=0.14 Score=48.44 Aligned_cols=49 Identities=14% Similarity=-0.005 Sum_probs=38.7
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.++++.||||||||..+.+|-+-.. +.-+||+=|--|+...+....++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5899999999999999998877653 224777778889888877766553
No 495
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.21 E-value=0.48 Score=40.41 Aligned_cols=42 Identities=24% Similarity=0.204 Sum_probs=28.9
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
+.+-+++++||.-.-+|......+..++......+.+|+.|-
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH 195 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEH 195 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 356789999999887777766777777776544444544443
No 496
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=92.20 E-value=0.23 Score=47.20 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=29.4
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEee
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt 215 (293)
++-+.+|+||.-.-+|......+...+..+..++-+|+.|--
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr 538 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 566889999998888876666666666666555556666543
No 497
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=92.19 E-value=0.19 Score=45.17 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=29.4
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~ 117 (293)
-...+++++.|.||+|||. ++..++..+... +.++||.=|.-+.....
T Consensus 12 ~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~--g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQ-AIRHLLDQIRAR--GDRAIIYDPKGEFTERF 59 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT--T-EEEEEEETTHHHHHH
T ss_pred chhhCcEEEECCCCCCHHH-HHHHHHHHHHHc--CCEEEEEECCchHHHHh
Confidence 3456899999999999996 445666666444 33555555655554433
No 498
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.17 E-value=0.32 Score=46.83 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=14.5
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
-+++.||.|+|||.++..
T Consensus 42 AYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 368999999999976543
No 499
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.14 E-value=0.7 Score=45.90 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.7
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.||||+|||..+
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999654
No 500
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.12 E-value=0.15 Score=39.93 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=20.9
Q ss_pred CCccEEEecchhhhhc--cccHHHHHHHHhhCCCCccEEEEEeecChh
Q 022724 174 RAIKLLVLDESDEMLS--RGFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~--~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~ 219 (293)
.+-+++|+||+=.|.- .+|...+..++. .+..++ ||++..
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi---~vv~~~ 135 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVI---GVVHKR 135 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEE---EE--SS
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEE---EEEecC
Confidence 4668999999988743 245665655555 444544 455443
Done!