Query 022724
Match_columns 293
No_of_seqs 178 out of 1802
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:07:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.6E-46 1.2E-50 336.7 33.3 271 20-292 43-320 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 2.7E-44 9.2E-49 322.3 30.4 273 20-292 24-296 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 1.7E-43 5.8E-48 317.6 32.2 271 21-292 3-296 (417)
4 3fe2_A Probable ATP-dependent 100.0 8.2E-43 2.8E-47 291.2 26.4 220 20-239 16-240 (242)
5 3eiq_A Eukaryotic initiation f 100.0 2.9E-42 9.8E-47 309.2 30.1 267 26-292 33-300 (414)
6 1s2m_A Putative ATP-dependent 100.0 3.3E-41 1.1E-45 301.2 30.9 260 31-292 19-278 (400)
7 1fuu_A Yeast initiation factor 100.0 9.5E-42 3.2E-46 303.8 24.1 262 30-292 18-279 (394)
8 1wrb_A DJVLGB; RNA helicase, D 100.0 1.6E-41 5.6E-46 285.2 22.9 230 20-249 8-252 (253)
9 3fht_A ATP-dependent RNA helic 100.0 7.9E-41 2.7E-45 299.6 28.2 266 24-292 16-286 (412)
10 3fmo_B ATP-dependent RNA helic 100.0 4.5E-41 1.5E-45 288.9 24.6 209 27-238 86-299 (300)
11 1xti_A Probable ATP-dependent 100.0 2.8E-40 9.4E-45 294.2 30.6 259 33-292 8-270 (391)
12 3iuy_A Probable ATP-dependent 100.0 5.3E-41 1.8E-45 277.8 23.7 212 24-236 10-228 (228)
13 3bor_A Human initiation factor 100.0 3.5E-41 1.2E-45 280.5 22.6 214 24-237 21-235 (237)
14 3pey_A ATP-dependent RNA helic 100.0 2.6E-40 8.8E-45 294.4 29.6 258 31-292 3-263 (395)
15 1vec_A ATP-dependent RNA helic 100.0 2E-40 7E-45 269.9 26.5 202 33-234 3-205 (206)
16 3ber_A Probable ATP-dependent 100.0 1.1E-40 3.7E-45 279.3 24.3 209 29-237 39-248 (249)
17 1q0u_A Bstdead; DEAD protein, 100.0 5.6E-41 1.9E-45 276.0 21.7 207 32-238 3-213 (219)
18 3fmp_B ATP-dependent RNA helic 100.0 5.5E-41 1.9E-45 306.7 23.5 260 30-292 89-353 (479)
19 1qde_A EIF4A, translation init 100.0 1.9E-40 6.6E-45 273.6 24.3 212 27-239 8-219 (224)
20 2oxc_A Probable ATP-dependent 100.0 2.4E-40 8.2E-45 274.2 24.5 211 25-236 16-228 (230)
21 2pl3_A Probable ATP-dependent 100.0 3.3E-39 1.1E-43 268.4 25.5 208 29-237 21-233 (236)
22 2gxq_A Heat resistant RNA depe 100.0 5.3E-39 1.8E-43 261.7 25.1 201 34-236 2-205 (207)
23 1t6n_A Probable ATP-dependent 100.0 4.7E-39 1.6E-43 264.6 24.9 206 30-235 11-219 (220)
24 1hv8_A Putative ATP-dependent 100.0 3E-38 1E-42 278.4 30.6 253 32-292 5-258 (367)
25 3ly5_A ATP-dependent RNA helic 100.0 1.1E-38 3.8E-43 269.1 23.1 200 33-232 52-258 (262)
26 3dkp_A Probable ATP-dependent 100.0 9.4E-39 3.2E-43 267.1 21.7 220 20-239 12-243 (245)
27 3sqw_A ATP-dependent RNA helic 100.0 6.8E-38 2.3E-42 292.4 25.7 263 30-292 14-308 (579)
28 2z0m_A 337AA long hypothetical 100.0 8E-37 2.7E-41 266.3 30.6 241 40-293 1-241 (337)
29 3i5x_A ATP-dependent RNA helic 100.0 4.9E-37 1.7E-41 285.9 25.9 253 40-292 79-359 (563)
30 3fho_A ATP-dependent RNA helic 100.0 6.5E-38 2.2E-42 288.0 18.3 260 29-292 115-377 (508)
31 3oiy_A Reverse gyrase helicase 100.0 2.7E-35 9.4E-40 264.2 16.6 234 43-292 9-272 (414)
32 2v1x_A ATP-dependent DNA helic 100.0 4.6E-34 1.6E-38 265.6 22.5 247 34-292 22-287 (591)
33 2zj8_A DNA helicase, putative 100.0 5.2E-34 1.8E-38 272.4 17.7 245 34-292 2-257 (720)
34 1oyw_A RECQ helicase, ATP-depe 100.0 4.3E-33 1.5E-37 256.3 20.8 243 33-292 2-256 (523)
35 2va8_A SSO2462, SKI2-type heli 100.0 9.2E-33 3.2E-37 263.7 23.8 245 33-292 8-272 (715)
36 3l9o_A ATP-dependent RNA helic 100.0 9E-33 3.1E-37 272.0 22.5 246 32-293 161-462 (1108)
37 2p6r_A Afuhel308 helicase; pro 100.0 7.4E-34 2.5E-38 270.6 13.4 244 34-292 2-262 (702)
38 4ddu_A Reverse gyrase; topoiso 100.0 1.5E-32 5.2E-37 270.3 20.2 227 50-292 74-329 (1104)
39 1gku_B Reverse gyrase, TOP-RG; 100.0 7E-33 2.4E-37 272.6 13.3 230 46-293 48-296 (1054)
40 2ykg_A Probable ATP-dependent 100.0 1.8E-31 6.1E-36 254.3 16.0 173 45-217 3-184 (696)
41 4a2p_A RIG-I, retinoic acid in 100.0 3.3E-30 1.1E-34 239.2 23.0 166 52-217 4-177 (556)
42 2xgj_A ATP-dependent RNA helic 100.0 6.1E-30 2.1E-34 249.9 25.7 228 49-293 81-364 (1010)
43 4f92_B U5 small nuclear ribonu 100.0 3.2E-30 1.1E-34 262.1 23.1 247 40-292 911-1175(1724)
44 3tbk_A RIG-I helicase domain; 100.0 1.5E-29 5.2E-34 234.5 24.8 164 55-218 4-176 (555)
45 4f92_B U5 small nuclear ribonu 100.0 2.8E-30 9.6E-35 262.5 20.7 246 40-292 66-337 (1724)
46 4a2q_A RIG-I, retinoic acid in 100.0 1E-29 3.5E-34 245.1 22.3 168 50-217 243-418 (797)
47 4a4z_A Antiviral helicase SKI2 100.0 1.7E-29 6E-34 246.7 20.3 158 50-220 35-192 (997)
48 4a2w_A RIG-I, retinoic acid in 100.0 1.8E-28 6.2E-33 239.3 21.2 168 50-217 243-418 (936)
49 1wp9_A ATP-dependent RNA helic 100.0 2.4E-27 8.1E-32 215.7 23.9 169 55-227 9-180 (494)
50 1tf5_A Preprotein translocase 100.0 9.4E-28 3.2E-32 225.2 21.2 161 50-218 79-288 (844)
51 2fsf_A Preprotein translocase 100.0 8.9E-28 3E-32 224.9 15.6 147 51-205 71-240 (853)
52 2eyq_A TRCF, transcription-rep 99.9 7.9E-26 2.7E-30 223.9 24.1 235 38-292 586-832 (1151)
53 1nkt_A Preprotein translocase 99.9 6.5E-26 2.2E-30 212.7 22.2 161 50-218 107-316 (922)
54 3b6e_A Interferon-induced heli 99.9 5.5E-27 1.9E-31 191.5 12.2 164 51-215 29-216 (216)
55 1gm5_A RECG; helicase, replica 99.9 1.7E-26 5.7E-31 219.6 17.2 231 42-292 356-606 (780)
56 4gl2_A Interferon-induced heli 99.9 1.5E-27 5.1E-32 227.3 8.6 163 55-218 7-193 (699)
57 2oca_A DAR protein, ATP-depend 99.9 2.7E-26 9.3E-31 211.0 9.1 155 54-220 112-266 (510)
58 2fwr_A DNA repair protein RAD2 99.9 4.3E-25 1.5E-29 201.2 14.5 136 55-217 93-229 (472)
59 2xau_A PRE-mRNA-splicing facto 99.9 6.3E-24 2.2E-28 202.8 21.0 246 30-292 69-323 (773)
60 3llm_A ATP-dependent RNA helic 99.9 3E-24 1E-28 178.0 15.6 166 55-231 61-231 (235)
61 2jlq_A Serine protease subunit 99.9 1.3E-25 4.4E-30 203.2 7.9 206 52-292 1-208 (451)
62 2whx_A Serine protease/ntpase/ 99.9 2.7E-26 9.2E-31 214.1 2.9 220 38-292 155-375 (618)
63 3o8b_A HCV NS3 protease/helica 99.9 3.4E-25 1.1E-29 205.8 6.3 197 56-292 218-416 (666)
64 1rif_A DAR protein, DNA helica 99.9 4.7E-24 1.6E-28 181.5 11.1 154 55-220 113-266 (282)
65 1yks_A Genome polyprotein [con 99.9 2.9E-25 9.8E-30 200.2 -1.5 185 66-292 4-197 (440)
66 2v6i_A RNA helicase; membrane, 99.9 4.3E-23 1.5E-27 185.5 12.3 190 69-292 1-191 (431)
67 2wv9_A Flavivirin protease NS2 99.9 2.7E-24 9.3E-29 202.0 4.3 211 47-292 202-430 (673)
68 2ipc_A Preprotein translocase 99.9 2.5E-21 8.6E-26 181.5 24.1 130 51-188 76-215 (997)
69 3h1t_A Type I site-specific re 99.9 4.3E-23 1.5E-27 192.9 10.8 150 55-219 178-344 (590)
70 2z83_A Helicase/nucleoside tri 99.9 2E-22 6.7E-27 182.7 11.4 191 64-292 15-210 (459)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.6E-21 5.5E-26 190.1 12.0 153 55-218 271-440 (1038)
72 2fz4_A DNA repair protein RAD2 99.9 1.6E-20 5.4E-25 155.5 16.0 138 55-219 93-231 (237)
73 1z63_A Helicase of the SNF2/RA 99.8 2.4E-18 8.3E-23 157.7 17.6 148 55-217 37-188 (500)
74 3rc3_A ATP-dependent RNA helic 99.8 2.5E-19 8.4E-24 168.1 7.7 190 65-292 150-340 (677)
75 3dmq_A RNA polymerase-associat 99.8 1.8E-18 6.1E-23 169.3 11.8 158 55-217 153-317 (968)
76 3crv_A XPD/RAD3 related DNA he 99.7 3E-17 1E-21 151.9 13.2 129 55-189 3-187 (551)
77 3mwy_W Chromo domain-containin 99.7 1.3E-15 4.4E-20 146.8 18.7 154 55-216 236-405 (800)
78 3jux_A Protein translocase sub 99.7 6.1E-15 2.1E-19 136.3 21.3 130 51-188 72-258 (822)
79 2vl7_A XPD; helicase, unknown 99.6 7.5E-16 2.6E-20 142.1 8.1 127 51-188 4-188 (540)
80 1z3i_X Similar to RAD54-like; 99.5 1.2E-13 4.2E-18 129.9 16.1 155 55-216 55-230 (644)
81 1w36_D RECD, exodeoxyribonucle 99.1 1.2E-10 4.2E-15 108.6 10.2 146 57-215 151-298 (608)
82 4a15_A XPD helicase, ATP-depen 99.1 8.1E-11 2.8E-15 110.0 8.1 82 55-138 3-88 (620)
83 1c4o_A DNA nucleotide excision 99.1 3.6E-09 1.2E-13 99.7 15.8 68 52-126 6-78 (664)
84 2d7d_A Uvrabc system protein B 98.8 1.1E-07 3.9E-12 89.4 15.8 67 55-127 12-83 (661)
85 2gk6_A Regulator of nonsense t 98.5 1.3E-06 4.6E-11 81.7 14.8 69 54-124 179-247 (624)
86 3e1s_A Exodeoxyribonuclease V, 98.5 7.4E-07 2.5E-11 82.4 12.9 125 55-213 189-313 (574)
87 2xzl_A ATP-dependent helicase 98.5 1.7E-06 5.8E-11 83.0 14.6 69 54-124 359-427 (802)
88 3upu_A ATP-dependent DNA helic 98.5 1.1E-06 3.6E-11 79.4 12.3 134 50-213 20-162 (459)
89 2wjy_A Regulator of nonsense t 98.4 3.7E-06 1.3E-10 80.6 14.6 68 55-124 356-423 (800)
90 4b3f_X DNA-binding protein smu 98.4 9.3E-07 3.2E-11 83.2 8.9 67 55-124 189-256 (646)
91 2o0j_A Terminase, DNA packagin 97.8 0.00085 2.9E-08 58.7 14.9 71 55-126 163-233 (385)
92 2p6n_A ATP-dependent RNA helic 97.7 4.7E-05 1.6E-09 60.1 5.7 67 224-292 8-74 (191)
93 3cpe_A Terminase, DNA packagin 97.6 0.00075 2.6E-08 62.7 13.0 143 55-214 163-312 (592)
94 3ec2_A DNA replication protein 97.5 0.00041 1.4E-08 53.9 8.4 31 57-87 16-55 (180)
95 3vkw_A Replicase large subunit 97.5 0.00042 1.4E-08 61.4 9.3 85 71-187 162-246 (446)
96 3lfu_A DNA helicase II; SF1 he 97.4 0.00029 9.9E-09 66.1 8.2 70 54-125 8-78 (647)
97 2orw_A Thymidine kinase; TMTK, 97.4 0.00066 2.3E-08 53.1 8.9 40 69-111 2-41 (184)
98 2hjv_A ATP-dependent RNA helic 97.3 0.00029 9.8E-09 53.9 5.5 51 241-292 5-55 (163)
99 1uaa_A REP helicase, protein ( 97.3 0.0005 1.7E-08 64.9 7.3 70 55-126 2-72 (673)
100 2b8t_A Thymidine kinase; deoxy 97.2 0.00088 3E-08 54.0 7.6 91 69-187 11-101 (223)
101 1xx6_A Thymidine kinase; NESG, 97.2 0.0011 3.9E-08 52.0 7.8 40 69-111 7-46 (191)
102 2kjq_A DNAA-related protein; s 97.2 0.00022 7.6E-09 53.8 3.5 18 69-86 35-52 (149)
103 2jgn_A DBX, DDX3, ATP-dependen 97.1 0.0008 2.7E-08 52.6 6.0 52 240-292 14-66 (185)
104 2j9r_A Thymidine kinase; TK1, 97.1 0.0016 5.5E-08 51.9 7.5 40 70-112 28-67 (214)
105 2chg_A Replication factor C sm 97.1 0.0061 2.1E-07 48.2 11.2 40 174-214 101-140 (226)
106 3te6_A Regulatory protein SIR3 97.1 0.003 1E-07 53.7 9.5 25 70-95 45-69 (318)
107 3u4q_A ATP-dependent helicase/ 97.1 0.0013 4.5E-08 66.2 8.4 67 55-123 10-79 (1232)
108 1l8q_A Chromosomal replication 97.0 0.0029 1E-07 53.9 9.6 18 70-87 37-54 (324)
109 3n70_A Transport activator; si 97.0 0.0076 2.6E-07 44.9 10.1 20 68-87 22-41 (145)
110 1a5t_A Delta prime, HOLB; zinc 97.0 0.0063 2.2E-07 52.2 10.9 33 56-88 3-42 (334)
111 1pjr_A PCRA; DNA repair, DNA r 96.9 0.0023 7.8E-08 60.9 8.7 70 54-125 10-80 (724)
112 2orv_A Thymidine kinase; TP4A 96.9 0.0053 1.8E-07 49.4 9.2 41 69-112 18-58 (234)
113 2z4s_A Chromosomal replication 96.9 0.0045 1.6E-07 55.2 9.7 18 70-87 130-147 (440)
114 2v1u_A Cell division control p 96.9 0.0039 1.3E-07 54.1 8.9 19 69-87 43-61 (387)
115 3co5_A Putative two-component 96.8 0.0025 8.6E-08 47.4 6.3 19 68-86 25-43 (143)
116 2zpa_A Uncharacterized protein 96.8 0.0071 2.4E-07 56.4 10.1 113 55-217 175-289 (671)
117 1d2n_A N-ethylmaleimide-sensit 96.8 0.0094 3.2E-07 49.4 10.1 17 71-87 65-81 (272)
118 2qby_B CDC6 homolog 3, cell di 96.7 0.0027 9.3E-08 55.3 6.5 37 178-215 136-173 (384)
119 1w4r_A Thymidine kinase; type 96.6 0.0056 1.9E-07 48.0 7.2 39 69-110 19-57 (195)
120 3bos_A Putative DNA replicatio 96.6 0.0035 1.2E-07 50.5 6.3 19 69-87 51-69 (242)
121 3h4m_A Proteasome-activating n 96.6 0.011 3.9E-07 49.1 9.4 54 32-87 13-68 (285)
122 3syl_A Protein CBBX; photosynt 96.6 0.0027 9.4E-08 53.6 5.6 18 70-87 67-84 (309)
123 2w58_A DNAI, primosome compone 96.6 0.024 8.4E-07 44.4 10.8 25 71-96 55-79 (202)
124 1iqp_A RFCS; clamp loader, ext 96.6 0.01 3.5E-07 50.2 9.1 39 174-213 109-147 (327)
125 1sxj_E Activator 1 40 kDa subu 96.5 0.01 3.6E-07 51.0 9.0 43 173-216 132-174 (354)
126 2p65_A Hypothetical protein PF 96.5 0.011 3.8E-07 45.3 8.0 18 70-87 43-60 (187)
127 3e2i_A Thymidine kinase; Zn-bi 96.4 0.0051 1.7E-07 49.0 5.8 99 69-200 27-125 (219)
128 2qby_A CDC6 homolog 1, cell di 96.4 0.0079 2.7E-07 52.1 7.3 18 70-87 45-62 (386)
129 1g5t_A COB(I)alamin adenosyltr 96.3 0.036 1.2E-06 43.4 10.2 141 70-224 28-171 (196)
130 1fnn_A CDC6P, cell division co 96.3 0.0069 2.4E-07 52.7 6.8 16 72-87 46-61 (389)
131 3u61_B DNA polymerase accessor 96.3 0.0093 3.2E-07 50.7 7.5 40 174-213 104-143 (324)
132 3kl4_A SRP54, signal recogniti 96.2 0.026 8.9E-07 50.0 9.7 128 72-225 99-232 (433)
133 3pfi_A Holliday junction ATP-d 96.2 0.054 1.8E-06 46.1 11.6 17 71-87 56-72 (338)
134 1njg_A DNA polymerase III subu 96.1 0.076 2.6E-06 42.3 11.5 40 174-214 125-164 (250)
135 1sxj_C Activator 1 40 kDa subu 96.0 0.047 1.6E-06 46.7 10.1 39 174-213 109-147 (340)
136 1sxj_D Activator 1 41 kDa subu 95.9 0.025 8.7E-07 48.4 8.3 40 174-214 132-171 (353)
137 2gno_A DNA polymerase III, gam 95.9 0.09 3.1E-06 44.3 11.3 39 174-213 81-119 (305)
138 3eie_A Vacuolar protein sortin 95.8 0.02 6.9E-07 48.7 7.0 50 32-87 14-68 (322)
139 2dr3_A UPF0273 protein PH0284; 95.7 0.07 2.4E-06 43.0 9.6 52 68-123 21-72 (247)
140 1sxj_B Activator 1 37 kDa subu 95.6 0.044 1.5E-06 46.2 8.4 39 175-214 107-145 (323)
141 2qgz_A Helicase loader, putati 95.6 0.032 1.1E-06 47.2 7.3 18 70-87 152-169 (308)
142 1jr3_A DNA polymerase III subu 95.5 0.07 2.4E-06 46.0 9.5 39 174-213 118-156 (373)
143 2r6a_A DNAB helicase, replicat 95.0 0.18 6.2E-06 45.0 10.9 51 67-120 200-250 (454)
144 3vfd_A Spastin; ATPase, microt 95.0 0.11 3.7E-06 45.4 9.1 18 70-87 148-165 (389)
145 1w5s_A Origin recognition comp 95.0 0.067 2.3E-06 46.7 7.9 17 71-87 51-69 (412)
146 3dm5_A SRP54, signal recogniti 95.0 0.33 1.1E-05 43.0 12.2 57 72-134 102-160 (443)
147 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.13 4.5E-06 40.8 8.9 20 68-87 21-40 (235)
148 2chq_A Replication factor C sm 94.9 0.057 1.9E-06 45.4 7.0 16 72-87 40-55 (319)
149 1n0w_A DNA repair protein RAD5 94.9 0.21 7.1E-06 40.0 10.0 23 69-91 23-45 (243)
150 2hjv_A ATP-dependent RNA helic 94.8 0.19 6.6E-06 37.8 9.0 74 101-184 35-112 (163)
151 3cmu_A Protein RECA, recombina 94.7 0.031 1.1E-06 58.4 5.5 40 70-112 1427-1466(2050)
152 2rb4_A ATP-dependent RNA helic 94.6 0.24 8.3E-06 37.7 9.3 73 101-183 34-110 (175)
153 1cr0_A DNA primase/helicase; R 94.5 0.066 2.3E-06 44.8 6.2 41 67-109 32-72 (296)
154 2q6t_A DNAB replication FORK h 94.4 0.33 1.1E-05 43.2 11.0 50 69-121 199-248 (444)
155 1sxj_A Activator 1 95 kDa subu 94.4 0.16 5.5E-06 46.2 9.1 41 174-216 147-189 (516)
156 3hu3_A Transitional endoplasmi 94.4 0.21 7E-06 45.1 9.6 43 176-218 298-350 (489)
157 1hqc_A RUVB; extended AAA-ATPa 94.3 0.06 2E-06 45.5 5.6 18 70-87 38-55 (324)
158 2ehv_A Hypothetical protein PH 94.3 0.053 1.8E-06 43.8 5.1 22 67-88 27-48 (251)
159 1fuk_A Eukaryotic initiation f 94.2 0.34 1.2E-05 36.4 9.2 74 101-184 30-107 (165)
160 3pvs_A Replication-associated 94.1 0.043 1.5E-06 49.0 4.5 17 71-87 51-67 (447)
161 1nlf_A Regulatory protein REPA 94.0 0.24 8.1E-06 41.0 8.6 24 65-88 25-48 (279)
162 2i1q_A DNA repair and recombin 94.0 0.092 3.1E-06 44.5 6.1 55 70-124 98-166 (322)
163 3eaq_A Heat resistant RNA depe 94.0 0.29 9.9E-06 38.7 8.7 71 101-181 31-105 (212)
164 2p6n_A ATP-dependent RNA helic 93.8 0.51 1.8E-05 36.6 9.7 72 102-183 55-130 (191)
165 1xp8_A RECA protein, recombina 93.6 0.15 5E-06 44.2 6.8 40 69-111 73-112 (366)
166 2z43_A DNA repair and recombin 93.6 0.28 9.7E-06 41.6 8.4 55 70-124 107-165 (324)
167 4a1f_A DNAB helicase, replicat 93.5 0.19 6.3E-06 43.0 7.2 51 67-121 43-93 (338)
168 2zr9_A Protein RECA, recombina 93.4 0.093 3.2E-06 45.2 5.2 39 69-110 60-98 (349)
169 3io5_A Recombination and repai 93.4 0.099 3.4E-06 44.2 5.1 90 72-188 30-124 (333)
170 2jgn_A DBX, DDX3, ATP-dependen 93.2 0.29 1E-05 37.7 7.4 89 80-182 29-121 (185)
171 2fna_A Conserved hypothetical 93.1 2.7 9.2E-05 35.3 14.1 51 159-213 124-177 (357)
172 3i5x_A ATP-dependent RNA helic 93.1 1.5 5.1E-05 40.0 13.1 96 82-184 320-419 (563)
173 1v5w_A DMC1, meiotic recombina 93.0 0.52 1.8E-05 40.3 9.4 54 70-123 122-179 (343)
174 3hr8_A Protein RECA; alpha and 93.0 0.12 4.1E-06 44.5 5.2 42 69-113 60-101 (356)
175 3m6a_A ATP-dependent protease 92.9 0.08 2.7E-06 48.5 4.3 19 69-87 107-125 (543)
176 3u4q_B ATP-dependent helicase/ 92.8 0.16 5.3E-06 51.0 6.5 40 73-112 4-43 (1166)
177 2l8b_A Protein TRAI, DNA helic 92.7 0.33 1.1E-05 37.4 6.6 122 56-215 35-158 (189)
178 3sqw_A ATP-dependent RNA helic 92.4 2.1 7.1E-05 39.3 13.1 87 91-184 278-368 (579)
179 3hjh_A Transcription-repair-co 92.1 1.2 4E-05 40.1 10.6 52 69-126 13-64 (483)
180 2i4i_A ATP-dependent RNA helic 92.0 1.1 3.9E-05 38.8 10.5 72 100-181 275-350 (417)
181 3bh0_A DNAB-like replicative h 92.0 0.37 1.3E-05 40.7 7.0 53 67-123 65-117 (315)
182 1pzn_A RAD51, DNA repair and r 91.9 0.68 2.3E-05 39.7 8.6 18 71-88 132-149 (349)
183 1t5i_A C_terminal domain of A 91.8 0.63 2.2E-05 35.3 7.5 74 101-184 31-108 (172)
184 3pxi_A Negative regulator of g 91.7 0.61 2.1E-05 44.5 8.9 17 72-88 523-539 (758)
185 4b4t_M 26S protease regulatory 91.7 0.062 2.1E-06 47.6 1.8 55 30-87 175-232 (434)
186 1u94_A RECA protein, recombina 91.7 0.11 3.9E-06 44.7 3.4 40 69-111 62-101 (356)
187 3lda_A DNA repair protein RAD5 91.0 1.6 5.4E-05 38.2 10.1 27 29-55 80-106 (400)
188 3i32_A Heat resistant RNA depe 90.8 0.88 3E-05 38.1 8.0 71 101-181 28-102 (300)
189 3cmu_A Protein RECA, recombina 90.7 0.48 1.6E-05 49.8 7.3 47 68-118 1079-1125(2050)
190 1qvr_A CLPB protein; coiled co 90.7 0.29 9.8E-06 47.4 5.5 18 70-87 191-208 (854)
191 3hws_A ATP-dependent CLP prote 90.6 0.38 1.3E-05 41.4 5.7 19 69-87 50-68 (363)
192 3pey_A ATP-dependent RNA helic 90.6 7.3 0.00025 33.1 14.5 76 100-185 242-321 (395)
193 2oap_1 GSPE-2, type II secreti 90.2 0.88 3E-05 41.2 8.0 40 45-86 236-276 (511)
194 2v1x_A ATP-dependent DNA helic 90.2 3.1 0.0001 38.4 11.8 82 91-182 257-342 (591)
195 1e9r_A Conjugal transfer prote 90.1 0.25 8.5E-06 43.7 4.2 19 69-87 52-70 (437)
196 3cmw_A Protein RECA, recombina 89.7 0.27 9.3E-06 50.8 4.6 86 70-189 1431-1523(1706)
197 4b4t_J 26S protease regulatory 89.7 0.16 5.6E-06 44.4 2.6 54 31-87 143-199 (405)
198 3cf0_A Transitional endoplasmi 89.6 0.11 3.9E-06 43.5 1.5 54 32-87 11-66 (301)
199 1p9r_A General secretion pathw 89.6 0.58 2E-05 41.2 6.1 28 59-86 154-183 (418)
200 3fht_A ATP-dependent RNA helic 89.4 1.4 4.8E-05 38.1 8.5 73 101-183 266-342 (412)
201 4f4c_A Multidrug resistance pr 89.3 0.21 7.3E-06 50.7 3.5 40 174-213 1234-1273(1321)
202 3b85_A Phosphate starvation-in 89.3 0.49 1.7E-05 37.3 5.0 30 57-86 9-38 (208)
203 4b4t_H 26S protease regulatory 89.3 0.16 5.5E-06 45.2 2.3 55 31-87 204-260 (467)
204 3nbx_X ATPase RAVA; AAA+ ATPas 89.3 0.53 1.8E-05 42.5 5.7 42 44-86 16-57 (500)
205 3e70_C DPA, signal recognition 89.1 2.9 0.0001 35.4 10.0 52 176-227 212-264 (328)
206 4b4t_L 26S protease subunit RP 88.9 0.14 4.7E-06 45.4 1.6 54 31-87 176-232 (437)
207 1jbk_A CLPB protein; beta barr 88.9 0.38 1.3E-05 36.5 4.0 18 70-87 43-60 (195)
208 2d7d_A Uvrabc system protein B 88.9 7.2 0.00025 36.4 13.4 77 101-187 445-525 (661)
209 1kgd_A CASK, peripheral plasma 88.9 0.22 7.5E-06 38.2 2.6 18 69-86 4-21 (180)
210 3cf2_A TER ATPase, transitiona 88.8 0.52 1.8E-05 45.1 5.6 16 71-86 239-254 (806)
211 2pt7_A CAG-ALFA; ATPase, prote 88.7 0.44 1.5E-05 40.5 4.6 19 67-85 168-186 (330)
212 1s2m_A Putative ATP-dependent 88.6 2.2 7.6E-05 36.7 9.2 73 101-183 258-334 (400)
213 2db3_A ATP-dependent RNA helic 88.5 3.2 0.00011 36.5 10.2 70 103-182 302-375 (434)
214 2yjt_D ATP-dependent RNA helic 88.2 0.087 3E-06 40.1 0.0 75 100-184 29-107 (170)
215 4b4t_K 26S protease regulatory 88.4 0.18 6.1E-06 44.6 1.9 54 31-87 167-223 (428)
216 1hv8_A Putative ATP-dependent 88.3 2.2 7.7E-05 36.0 8.9 73 101-183 238-314 (367)
217 2gza_A Type IV secretion syste 88.2 0.53 1.8E-05 40.6 4.9 20 67-86 172-191 (361)
218 3vaa_A Shikimate kinase, SK; s 88.2 0.26 8.7E-06 38.4 2.6 19 69-87 24-42 (199)
219 4akg_A Glutathione S-transfera 88.1 1.1 3.8E-05 48.6 7.9 67 41-110 891-963 (2695)
220 1xti_A Probable ATP-dependent 88.1 2.1 7.3E-05 36.6 8.7 74 101-184 250-327 (391)
221 1wp9_A ATP-dependent RNA helic 88.0 1.8 6.1E-05 38.0 8.4 96 79-185 340-447 (494)
222 2bjv_A PSP operon transcriptio 87.9 1.1 3.9E-05 36.3 6.5 19 69-87 28-46 (265)
223 2eyu_A Twitching motility prot 87.8 0.27 9.4E-06 40.3 2.6 20 67-86 22-41 (261)
224 2r44_A Uncharacterized protein 87.7 0.3 1E-05 41.3 2.9 26 62-87 38-63 (331)
225 4ag6_A VIRB4 ATPase, type IV s 87.6 0.52 1.8E-05 41.0 4.5 43 175-217 262-308 (392)
226 2j0s_A ATP-dependent RNA helic 87.6 2.3 7.8E-05 36.8 8.7 72 102-183 277-352 (410)
227 1xwi_A SKD1 protein; VPS4B, AA 87.4 0.11 3.6E-06 44.2 -0.1 50 32-87 8-62 (322)
228 1lvg_A Guanylate kinase, GMP k 87.4 0.3 1E-05 38.1 2.5 19 69-87 3-21 (198)
229 1oyw_A RECQ helicase, ATP-depe 87.3 2.7 9.3E-05 38.1 9.2 73 101-183 236-312 (523)
230 1ls1_A Signal recognition part 87.3 4.4 0.00015 33.6 9.9 18 70-87 98-115 (295)
231 1ofh_A ATP-dependent HSL prote 87.3 1.4 4.6E-05 36.5 6.8 18 70-87 50-67 (310)
232 3tau_A Guanylate kinase, GMP k 87.2 0.31 1.1E-05 38.3 2.6 19 69-87 7-25 (208)
233 3iij_A Coilin-interacting nucl 87.0 0.29 9.9E-06 37.3 2.2 21 68-88 9-29 (180)
234 2x8a_A Nuclear valosin-contain 86.9 0.13 4.4E-06 42.6 0.1 54 31-86 5-60 (274)
235 3trf_A Shikimate kinase, SK; a 86.8 0.33 1.1E-05 37.1 2.5 19 70-88 5-23 (185)
236 2qor_A Guanylate kinase; phosp 86.7 0.31 1.1E-05 38.1 2.3 21 67-87 9-29 (204)
237 2zts_A Putative uncharacterize 86.7 0.41 1.4E-05 38.4 3.1 52 69-123 29-80 (251)
238 3a8t_A Adenylate isopentenyltr 86.7 0.35 1.2E-05 41.2 2.7 18 70-87 40-57 (339)
239 3vkg_A Dynein heavy chain, cyt 86.7 2.4 8.2E-05 46.7 9.4 75 41-118 874-954 (3245)
240 1qhx_A CPT, protein (chloramph 86.4 0.37 1.3E-05 36.5 2.5 18 70-87 3-20 (178)
241 2ius_A DNA translocase FTSK; n 86.3 0.97 3.3E-05 40.9 5.5 19 69-87 166-184 (512)
242 3jvv_A Twitching mobility prot 86.3 0.49 1.7E-05 40.8 3.5 18 69-86 122-139 (356)
243 2j41_A Guanylate kinase; GMP, 86.3 0.34 1.2E-05 37.7 2.3 20 68-87 4-23 (207)
244 2px0_A Flagellar biosynthesis 86.1 1.4 4.8E-05 36.8 6.1 19 70-88 105-123 (296)
245 4b4t_I 26S protease regulatory 86.1 0.22 7.5E-06 43.9 1.2 54 31-87 177-233 (437)
246 1zp6_A Hypothetical protein AT 86.0 0.26 8.9E-06 37.9 1.5 20 67-86 6-25 (191)
247 1w36_B RECB, exodeoxyribonucle 85.9 1.5 5.1E-05 44.1 7.2 53 72-124 18-79 (1180)
248 1ixz_A ATP-dependent metallopr 85.9 0.29 1E-05 39.7 1.8 53 31-86 11-65 (254)
249 2cvh_A DNA repair and recombin 85.6 0.51 1.7E-05 37.0 3.0 35 69-109 19-53 (220)
250 3tr0_A Guanylate kinase, GMP k 85.6 0.43 1.5E-05 37.1 2.6 19 69-87 6-24 (205)
251 1z6g_A Guanylate kinase; struc 85.6 0.45 1.5E-05 37.8 2.7 20 67-86 20-39 (218)
252 1ojl_A Transcriptional regulat 85.6 1.3 4.4E-05 37.1 5.7 19 69-87 24-42 (304)
253 1y63_A LMAJ004144AAA protein; 85.6 0.43 1.5E-05 36.6 2.5 19 69-87 9-27 (184)
254 2qz4_A Paraplegin; AAA+, SPG7, 85.5 0.41 1.4E-05 38.8 2.5 52 33-87 3-56 (262)
255 2qmh_A HPR kinase/phosphorylas 85.4 0.4 1.4E-05 37.6 2.2 18 69-86 33-50 (205)
256 3ney_A 55 kDa erythrocyte memb 85.4 0.46 1.6E-05 37.2 2.6 18 69-86 18-35 (197)
257 3b9p_A CG5977-PA, isoform A; A 85.2 0.4 1.4E-05 39.8 2.3 53 32-87 17-71 (297)
258 2oca_A DAR protein, ATP-depend 85.2 7.8 0.00027 34.6 11.1 75 102-185 348-426 (510)
259 1kag_A SKI, shikimate kinase I 85.2 0.48 1.7E-05 35.7 2.6 18 70-87 4-21 (173)
260 2eyq_A TRCF, transcription-rep 85.1 1.8 6.1E-05 43.3 7.3 78 101-186 812-893 (1151)
261 3exa_A TRNA delta(2)-isopenten 85.1 0.4 1.4E-05 40.4 2.2 18 70-87 3-20 (322)
262 1c9k_A COBU, adenosylcobinamid 85.0 0.98 3.4E-05 34.7 4.2 43 73-122 2-44 (180)
263 1ex7_A Guanylate kinase; subst 84.7 0.49 1.7E-05 36.6 2.5 16 71-86 2-17 (186)
264 1lv7_A FTSH; alpha/beta domain 84.7 0.45 1.5E-05 38.6 2.3 53 32-87 8-62 (257)
265 1um8_A ATP-dependent CLP prote 84.6 2 6.7E-05 37.0 6.6 18 70-87 72-89 (376)
266 3lw7_A Adenylate kinase relate 84.6 0.45 1.5E-05 35.6 2.2 17 71-87 2-18 (179)
267 1tue_A Replication protein E1; 84.5 0.52 1.8E-05 37.2 2.5 50 42-94 28-81 (212)
268 1u0j_A DNA replication protein 84.3 2 6.9E-05 35.2 6.1 43 43-88 74-122 (267)
269 2ewv_A Twitching motility prot 84.3 0.47 1.6E-05 41.1 2.4 20 67-86 133-152 (372)
270 3uk6_A RUVB-like 2; hexameric 84.1 0.45 1.5E-05 40.8 2.3 18 70-87 70-87 (368)
271 3a00_A Guanylate kinase, GMP k 84.1 0.55 1.9E-05 36.1 2.5 16 71-86 2-17 (186)
272 4f4c_A Multidrug resistance pr 83.9 0.59 2E-05 47.5 3.3 34 173-206 570-603 (1321)
273 3foz_A TRNA delta(2)-isopenten 83.9 0.52 1.8E-05 39.7 2.4 16 72-87 12-27 (316)
274 4eun_A Thermoresistant glucoki 83.9 0.57 2E-05 36.4 2.6 19 69-87 28-46 (200)
275 1znw_A Guanylate kinase, GMP k 83.8 0.57 2E-05 36.7 2.6 21 66-86 16-36 (207)
276 4gp7_A Metallophosphoesterase; 83.7 0.48 1.7E-05 35.9 2.0 19 69-87 8-26 (171)
277 2ze6_A Isopentenyl transferase 83.7 0.51 1.7E-05 38.4 2.3 16 72-87 3-18 (253)
278 1c4o_A DNA nucleotide excision 83.7 18 0.0006 33.8 13.0 77 101-187 439-519 (664)
279 1kht_A Adenylate kinase; phosp 83.6 0.58 2E-05 35.7 2.5 19 69-87 2-20 (192)
280 1iy2_A ATP-dependent metallopr 83.2 0.46 1.6E-05 39.1 1.8 53 31-86 35-89 (278)
281 1yks_A Genome polyprotein [con 83.2 3 0.0001 36.8 7.2 68 101-180 177-245 (440)
282 2zan_A Vacuolar protein sortin 82.9 0.36 1.2E-05 42.9 1.1 54 31-87 129-184 (444)
283 1knq_A Gluconate kinase; ALFA/ 82.8 0.53 1.8E-05 35.5 2.0 19 69-87 7-25 (175)
284 2r2a_A Uncharacterized protein 82.8 0.91 3.1E-05 35.5 3.3 40 176-215 88-132 (199)
285 1s96_A Guanylate kinase, GMP k 82.3 0.72 2.5E-05 36.7 2.6 20 67-86 13-32 (219)
286 3t15_A Ribulose bisphosphate c 82.1 0.59 2E-05 39.0 2.1 17 71-87 37-53 (293)
287 2iut_A DNA translocase FTSK; n 82.1 1.9 6.4E-05 39.5 5.5 41 70-110 214-255 (574)
288 1nij_A Hypothetical protein YJ 82.0 0.95 3.2E-05 38.2 3.4 37 175-214 151-187 (318)
289 3kb2_A SPBC2 prophage-derived 81.9 0.68 2.3E-05 34.6 2.3 16 72-87 3-18 (173)
290 1tf7_A KAIC; homohexamer, hexa 81.9 6.8 0.00023 35.4 9.3 51 67-121 278-328 (525)
291 3cm0_A Adenylate kinase; ATP-b 81.9 0.51 1.7E-05 36.0 1.6 19 69-87 3-21 (186)
292 2v6i_A RNA helicase; membrane, 81.8 2.6 8.8E-05 37.1 6.3 67 101-179 171-238 (431)
293 1ly1_A Polynucleotide kinase; 81.8 0.69 2.4E-05 34.9 2.3 16 72-87 4-19 (181)
294 2qp9_X Vacuolar protein sortin 81.8 0.72 2.4E-05 39.6 2.6 18 70-87 84-101 (355)
295 3tqc_A Pantothenate kinase; bi 81.5 2.8 9.7E-05 35.4 6.1 16 72-87 94-109 (321)
296 3uie_A Adenylyl-sulfate kinase 81.5 0.65 2.2E-05 36.1 2.0 19 69-87 24-42 (200)
297 2c9o_A RUVB-like 1; hexameric 81.3 0.72 2.4E-05 41.1 2.5 20 69-88 62-81 (456)
298 3bgw_A DNAB-like replicative h 80.9 1.5 5.1E-05 38.9 4.4 38 69-109 196-233 (444)
299 4fcw_A Chaperone protein CLPB; 80.9 0.7 2.4E-05 38.5 2.2 17 71-87 48-64 (311)
300 3crm_A TRNA delta(2)-isopenten 80.7 0.96 3.3E-05 38.3 2.9 16 72-87 7-22 (323)
301 3lnc_A Guanylate kinase, GMP k 80.6 0.64 2.2E-05 37.0 1.7 20 67-86 24-43 (231)
302 3d8b_A Fidgetin-like protein 1 80.3 0.82 2.8E-05 39.2 2.4 18 70-87 117-134 (357)
303 2xau_A PRE-mRNA-splicing facto 80.2 8 0.00027 36.9 9.4 75 101-181 303-393 (773)
304 3tbk_A RIG-I helicase domain; 80.1 4.2 0.00014 36.6 7.2 96 81-183 370-478 (555)
305 3ice_A Transcription terminati 79.9 2.9 9.8E-05 36.4 5.6 32 56-87 157-191 (422)
306 3nwj_A ATSK2; P loop, shikimat 79.8 1.1 3.8E-05 36.4 2.9 19 69-87 47-65 (250)
307 2v54_A DTMP kinase, thymidylat 79.8 0.99 3.4E-05 34.9 2.6 19 69-87 3-21 (204)
308 3nwn_A Kinesin-like protein KI 79.8 1.4 4.7E-05 38.0 3.6 23 65-87 98-122 (359)
309 2qt1_A Nicotinamide riboside k 79.8 0.48 1.6E-05 37.0 0.7 24 64-87 15-38 (207)
310 2rhm_A Putative kinase; P-loop 79.7 0.75 2.6E-05 35.2 1.9 18 70-87 5-22 (193)
311 2r62_A Cell division protease 79.7 0.44 1.5E-05 38.9 0.5 18 70-87 44-61 (268)
312 2c95_A Adenylate kinase 1; tra 79.6 0.94 3.2E-05 34.7 2.4 20 68-87 7-26 (196)
313 1zuh_A Shikimate kinase; alpha 79.4 0.98 3.3E-05 33.8 2.4 18 71-88 8-25 (168)
314 3d3q_A TRNA delta(2)-isopenten 79.4 1.1 3.8E-05 38.2 2.9 16 72-87 9-24 (340)
315 1ye8_A Protein THEP1, hypothet 79.4 0.97 3.3E-05 34.6 2.4 15 72-86 2-16 (178)
316 3tif_A Uncharacterized ABC tra 79.4 0.75 2.5E-05 37.0 1.8 31 174-204 162-192 (235)
317 2bdt_A BH3686; alpha-beta prot 79.1 0.69 2.3E-05 35.5 1.4 17 71-87 3-19 (189)
318 1np6_A Molybdopterin-guanine d 79.1 2.8 9.4E-05 31.9 4.8 15 71-85 7-21 (174)
319 1via_A Shikimate kinase; struc 79.0 1.1 3.6E-05 33.9 2.5 17 71-87 5-21 (175)
320 1bg2_A Kinesin; motor protein, 79.0 1.6 5.5E-05 36.9 3.8 23 65-87 71-95 (325)
321 1z5z_A Helicase of the SNF2/RA 78.9 1.4 4.7E-05 36.3 3.2 37 256-292 94-132 (271)
322 1f2t_A RAD50 ABC-ATPase; DNA d 78.7 1 3.5E-05 33.3 2.3 16 71-86 24-39 (149)
323 3c8u_A Fructokinase; YP_612366 78.7 0.88 3E-05 35.6 2.0 18 69-86 21-38 (208)
324 1g8p_A Magnesium-chelatase 38 78.6 0.62 2.1E-05 39.5 1.1 19 69-87 44-62 (350)
325 2pez_A Bifunctional 3'-phospho 78.6 0.95 3.3E-05 34.3 2.1 19 69-87 4-22 (179)
326 1gvn_B Zeta; postsegregational 78.5 0.88 3E-05 37.8 2.0 17 71-87 34-50 (287)
327 1tev_A UMP-CMP kinase; ploop, 78.4 0.93 3.2E-05 34.6 2.0 18 70-87 3-20 (196)
328 3t61_A Gluconokinase; PSI-biol 78.4 1.1 3.7E-05 34.8 2.4 17 71-87 19-35 (202)
329 3dc4_A Kinesin-like protein NO 78.4 1.5 5.2E-05 37.4 3.5 32 56-87 71-112 (344)
330 1m7g_A Adenylylsulfate kinase; 78.1 1.3 4.4E-05 34.7 2.8 30 57-87 13-42 (211)
331 1aky_A Adenylate kinase; ATP:A 78.0 1.2 4.1E-05 35.0 2.6 19 69-87 3-21 (220)
332 3k1j_A LON protease, ATP-depen 78.0 3.6 0.00012 38.0 6.2 25 63-87 53-77 (604)
333 1zd8_A GTP:AMP phosphotransfer 77.9 1.1 3.7E-05 35.5 2.3 19 69-87 6-24 (227)
334 3pxg_A Negative regulator of g 77.9 1.5 5E-05 39.2 3.4 19 70-88 201-219 (468)
335 2iyv_A Shikimate kinase, SK; t 77.9 1.3 4.3E-05 33.7 2.6 17 71-87 3-19 (184)
336 3t0q_A AGR253WP; kinesin, alph 77.8 1.8 6.3E-05 37.0 3.8 25 63-87 77-103 (349)
337 3asz_A Uridine kinase; cytidin 77.7 0.94 3.2E-05 35.3 1.9 18 69-86 5-22 (211)
338 1f9v_A Kinesin-like protein KA 77.7 1.9 6.6E-05 36.8 3.9 25 63-87 76-102 (347)
339 2v9p_A Replication protein E1; 77.7 1.4 4.7E-05 37.0 2.9 19 68-86 124-142 (305)
340 3eiq_A Eukaryotic initiation f 77.5 2.5 8.5E-05 36.5 4.7 72 101-182 280-355 (414)
341 1e6c_A Shikimate kinase; phosp 77.5 1.3 4.3E-05 33.2 2.5 17 71-87 3-19 (173)
342 3fb4_A Adenylate kinase; psych 77.4 1.2 3.9E-05 35.0 2.3 16 72-87 2-17 (216)
343 3eph_A TRNA isopentenyltransfe 77.2 1.1 3.7E-05 39.2 2.2 16 72-87 4-19 (409)
344 2cdn_A Adenylate kinase; phosp 77.2 1.3 4.6E-05 34.2 2.6 18 70-87 20-37 (201)
345 1cke_A CK, MSSA, protein (cyti 77.2 1.2 4.2E-05 35.0 2.5 18 70-87 5-22 (227)
346 1v8k_A Kinesin-like protein KI 77.2 1.8 6.2E-05 37.8 3.6 22 66-87 149-172 (410)
347 1xjc_A MOBB protein homolog; s 77.1 3 0.0001 31.6 4.4 25 72-97 6-30 (169)
348 4a14_A Kinesin, kinesin-like p 77.1 2 6.7E-05 36.7 3.8 22 66-87 78-101 (344)
349 1zak_A Adenylate kinase; ATP:A 77.0 1.2 4E-05 35.2 2.2 18 70-87 5-22 (222)
350 4etp_A Kinesin-like protein KA 77.0 1.8 6.3E-05 37.8 3.7 25 63-87 132-158 (403)
351 2vvg_A Kinesin-2; motor protei 77.0 2 6.8E-05 36.8 3.8 32 56-87 66-107 (350)
352 2y65_A Kinesin, kinesin heavy 76.9 2 6.8E-05 37.0 3.8 22 66-87 79-102 (365)
353 2h58_A Kinesin-like protein KI 76.9 2 6.9E-05 36.4 3.8 25 63-87 72-98 (330)
354 2yvu_A Probable adenylyl-sulfa 76.9 1.1 3.9E-05 34.1 2.1 19 69-87 12-30 (186)
355 2bwj_A Adenylate kinase 5; pho 76.8 1.2 4.2E-05 34.2 2.3 19 69-87 11-29 (199)
356 2zfi_A Kinesin-like protein KI 76.8 2 6.8E-05 37.0 3.8 23 65-87 83-107 (366)
357 3b6u_A Kinesin-like protein KI 76.8 1.9 6.4E-05 37.3 3.6 22 66-87 96-119 (372)
358 3dl0_A Adenylate kinase; phosp 76.8 1.2 4.2E-05 34.8 2.3 16 72-87 2-17 (216)
359 1goj_A Kinesin, kinesin heavy 76.8 1.9 6.5E-05 37.0 3.6 22 66-87 75-98 (355)
360 3gbj_A KIF13B protein; kinesin 76.7 1.9 6.6E-05 36.9 3.7 23 65-87 86-110 (354)
361 3qf7_A RAD50; ABC-ATPase, ATPa 76.7 1.1 3.9E-05 38.5 2.3 16 72-87 25-40 (365)
362 2wv9_A Flavivirin protease NS2 76.6 6.8 0.00023 36.7 7.6 68 101-180 410-478 (673)
363 2r8r_A Sensor protein; KDPD, P 76.6 2.7 9.3E-05 33.5 4.2 23 70-92 5-28 (228)
364 1t5c_A CENP-E protein, centrom 76.5 1.9 6.7E-05 36.8 3.6 23 65-87 71-95 (349)
365 1in4_A RUVB, holliday junction 76.5 1.6 5.5E-05 36.9 3.1 17 71-87 52-68 (334)
366 3lre_A Kinesin-like protein KI 76.5 2 6.8E-05 36.9 3.7 32 56-87 82-123 (355)
367 1sky_E F1-ATPase, F1-ATP synth 76.4 20 0.0007 31.9 10.2 25 63-87 141-168 (473)
368 2nr8_A Kinesin-like protein KI 76.4 2 6.7E-05 36.9 3.6 23 65-87 97-121 (358)
369 4a74_A DNA repair and recombin 76.3 1.1 3.9E-05 35.2 2.0 20 68-87 23-42 (231)
370 1x88_A Kinesin-like protein KI 76.1 1.9 6.7E-05 37.0 3.5 23 65-87 82-106 (359)
371 2cbz_A Multidrug resistance-as 76.0 1.2 4.1E-05 35.8 2.1 27 174-200 144-170 (237)
372 3kta_A Chromosome segregation 75.9 1.7 6E-05 32.8 2.9 16 72-87 28-43 (182)
373 2plr_A DTMP kinase, probable t 75.9 1.2 4.2E-05 34.5 2.1 19 69-87 3-21 (213)
374 2wwf_A Thymidilate kinase, put 75.9 1.3 4.6E-05 34.3 2.3 19 69-87 9-27 (212)
375 4e22_A Cytidylate kinase; P-lo 75.9 1.4 4.9E-05 35.6 2.5 19 69-87 26-44 (252)
376 2vli_A Antibiotic resistance p 75.9 1.1 3.9E-05 33.8 1.8 19 69-87 4-22 (183)
377 1ak2_A Adenylate kinase isoenz 75.8 1.4 4.7E-05 35.1 2.4 19 69-87 15-33 (233)
378 2pt5_A Shikimate kinase, SK; a 75.7 1.4 4.9E-05 32.8 2.3 16 72-87 2-17 (168)
379 2pze_A Cystic fibrosis transme 75.7 1.1 3.8E-05 35.8 1.7 39 174-213 147-186 (229)
380 2z0m_A 337AA long hypothetical 75.7 7 0.00024 32.4 6.9 71 100-184 219-293 (337)
381 1nn5_A Similar to deoxythymidy 75.6 1.4 4.8E-05 34.3 2.4 19 69-87 8-26 (215)
382 2pcj_A ABC transporter, lipopr 75.6 1 3.5E-05 35.9 1.5 39 174-212 157-195 (224)
383 1g41_A Heat shock protein HSLU 75.3 1.4 4.9E-05 39.0 2.5 18 70-87 50-67 (444)
384 2ykg_A Probable ATP-dependent 75.3 4.6 0.00016 37.8 6.2 79 100-184 397-488 (696)
385 3nh6_A ATP-binding cassette SU 75.3 1.6 5.5E-05 36.6 2.7 38 174-212 207-244 (306)
386 2wbe_C Bipolar kinesin KRP-130 75.1 2.1 7.2E-05 37.0 3.5 31 56-86 77-117 (373)
387 2jlq_A Serine protease subunit 75.1 8.3 0.00028 34.1 7.5 67 102-180 189-256 (451)
388 2heh_A KIF2C protein; kinesin, 75.1 2.3 7.9E-05 36.9 3.7 22 66-87 129-152 (387)
389 2i3b_A HCR-ntpase, human cance 75.1 2.2 7.6E-05 32.9 3.3 42 173-217 103-146 (189)
390 3cob_A Kinesin heavy chain-lik 75.0 1.9 6.5E-05 37.2 3.2 25 63-87 71-97 (369)
391 3cf2_A TER ATPase, transitiona 75.0 1 3.4E-05 43.2 1.5 55 31-87 472-528 (806)
392 1sgw_A Putative ABC transporte 74.9 1.4 4.9E-05 34.8 2.2 18 68-85 33-50 (214)
393 1nks_A Adenylate kinase; therm 74.8 1.4 4.7E-05 33.6 2.1 16 72-87 3-18 (194)
394 1rj9_A FTSY, signal recognitio 74.8 3 0.0001 34.9 4.3 17 70-86 102-118 (304)
395 3u06_A Protein claret segregat 74.8 2.1 7.3E-05 37.5 3.4 25 63-87 130-156 (412)
396 2if2_A Dephospho-COA kinase; a 74.6 1.5 5E-05 34.0 2.2 16 72-87 3-18 (204)
397 2jaq_A Deoxyguanosine kinase; 74.6 1.5 5.3E-05 33.6 2.3 16 72-87 2-17 (205)
398 1vma_A Cell division protein F 74.5 2.9 0.0001 35.0 4.2 17 71-87 105-121 (306)
399 1g6h_A High-affinity branched- 74.4 1.2 4.1E-05 36.3 1.7 39 174-212 170-208 (257)
400 3bfn_A Kinesin-like protein KI 74.2 2.1 7.1E-05 37.2 3.2 32 56-87 75-116 (388)
401 3be4_A Adenylate kinase; malar 74.1 1.6 5.6E-05 34.3 2.4 18 70-87 5-22 (217)
402 2j37_W Signal recognition part 74.1 13 0.00046 33.4 8.6 35 72-109 103-137 (504)
403 1b0u_A Histidine permease; ABC 74.0 1.3 4.5E-05 36.2 1.8 31 174-204 170-200 (262)
404 2ff7_A Alpha-hemolysin translo 74.0 1.4 4.9E-05 35.6 2.0 39 174-213 162-200 (247)
405 3f9v_A Minichromosome maintena 74.0 1.9 6.6E-05 39.8 3.1 14 72-85 329-342 (595)
406 1qf9_A UMP/CMP kinase, protein 73.9 1.5 5E-05 33.4 2.0 17 71-87 7-23 (194)
407 2owm_A Nckin3-434, related to 73.8 2.6 8.9E-05 37.3 3.8 21 67-87 132-154 (443)
408 3gfo_A Cobalt import ATP-bindi 73.8 1.4 4.9E-05 36.3 2.0 30 174-203 160-189 (275)
409 1jjv_A Dephospho-COA kinase; P 73.8 1.6 5.4E-05 33.9 2.2 16 72-87 4-19 (206)
410 2bbw_A Adenylate kinase 4, AK4 73.6 1.8 6.3E-05 34.7 2.6 18 69-86 26-43 (246)
411 3p32_A Probable GTPase RV1496/ 73.5 41 0.0014 28.4 11.8 16 72-87 81-96 (355)
412 1htw_A HI0065; nucleotide-bind 73.5 1.2 4.1E-05 33.3 1.4 18 68-85 31-48 (158)
413 2ghi_A Transport protein; mult 73.4 1.5 5.2E-05 35.8 2.1 39 174-213 172-210 (260)
414 2ce7_A Cell division protein F 73.3 1.6 5.4E-05 39.1 2.3 51 32-87 12-66 (476)
415 4akg_A Glutathione S-transfera 73.1 1.6 5.3E-05 47.5 2.5 21 67-87 1264-1284(2695)
416 1ukz_A Uridylate kinase; trans 73.0 1.7 5.8E-05 33.6 2.2 17 71-87 16-32 (203)
417 2qi9_C Vitamin B12 import ATP- 73.0 1.4 4.8E-05 35.8 1.7 36 178-213 154-189 (249)
418 2olj_A Amino acid ABC transpor 72.8 1.5 5E-05 36.0 1.8 40 174-213 176-215 (263)
419 3auy_A DNA double-strand break 72.6 1.6 5.4E-05 37.7 2.1 15 73-87 28-42 (371)
420 1vpl_A ABC transporter, ATP-bi 72.6 1.5 5.1E-05 35.8 1.8 40 174-213 163-202 (256)
421 2rep_A Kinesin-like protein KI 72.6 2.6 8.9E-05 36.5 3.4 23 65-87 109-133 (376)
422 1e4v_A Adenylate kinase; trans 72.5 1.7 5.9E-05 34.0 2.1 16 72-87 2-17 (214)
423 2yz2_A Putative ABC transporte 72.2 1.5 5.1E-05 35.9 1.8 40 174-213 155-194 (266)
424 4g1u_C Hemin import ATP-bindin 72.2 3.3 0.00011 33.9 3.8 30 175-204 165-194 (266)
425 1mv5_A LMRA, multidrug resista 72.1 1.4 4.9E-05 35.5 1.6 39 174-213 156-194 (243)
426 1ji0_A ABC transporter; ATP bi 71.9 1.7 5.8E-05 35.0 2.0 39 174-212 156-195 (240)
427 2whx_A Serine protease/ntpase/ 71.9 15 0.00051 34.0 8.6 68 101-180 355-423 (618)
428 3tlx_A Adenylate kinase 2; str 71.8 2.7 9.4E-05 33.7 3.3 19 69-87 28-46 (243)
429 2ihy_A ABC transporter, ATP-bi 71.8 1.5 5.2E-05 36.2 1.7 30 174-203 178-207 (279)
430 2zu0_C Probable ATP-dependent 71.6 1.8 6.2E-05 35.5 2.1 40 174-213 181-220 (267)
431 2pbr_A DTMP kinase, thymidylat 71.6 2 6.8E-05 32.7 2.3 16 72-87 2-17 (195)
432 1zu4_A FTSY; GTPase, signal re 71.5 3.7 0.00013 34.6 4.1 17 71-87 106-122 (320)
433 2d2e_A SUFC protein; ABC-ATPas 71.4 1.8 6E-05 35.1 2.0 40 174-213 160-199 (250)
434 3a4m_A L-seryl-tRNA(SEC) kinas 71.4 1.9 6.6E-05 35.0 2.3 18 70-87 4-21 (260)
435 1ry6_A Internal kinesin; kines 71.3 3.1 0.00011 35.8 3.6 19 69-87 82-102 (360)
436 3pxi_A Negative regulator of g 71.3 1.9 6.6E-05 41.0 2.6 18 70-87 201-218 (758)
437 2p5t_B PEZT; postsegregational 71.2 1.3 4.4E-05 35.9 1.2 18 70-87 32-49 (253)
438 4gl2_A Interferon-induced heli 71.0 2.5 8.6E-05 39.6 3.3 75 101-181 400-488 (699)
439 2ixe_A Antigen peptide transpo 70.7 1.9 6.5E-05 35.4 2.1 40 174-213 173-213 (271)
440 2z0h_A DTMP kinase, thymidylat 70.6 2.1 7.1E-05 32.7 2.2 16 73-88 3-18 (197)
441 3b9q_A Chloroplast SRP recepto 70.6 2.4 8.4E-05 35.4 2.8 18 70-87 100-117 (302)
442 2nq2_C Hypothetical ABC transp 70.5 1.9 6.5E-05 35.0 2.0 40 174-213 145-185 (253)
443 3vkg_A Dynein heavy chain, cyt 70.4 7.4 0.00025 43.0 6.8 24 62-85 1295-1319(3245)
444 3qks_A DNA double-strand break 70.0 3.1 0.00011 32.4 3.1 17 71-87 24-40 (203)
445 2f1r_A Molybdopterin-guanine d 70.0 1.6 5.5E-05 33.1 1.4 16 72-87 4-19 (171)
446 2xb4_A Adenylate kinase; ATP-b 69.9 2.3 7.8E-05 33.6 2.3 16 72-87 2-17 (223)
447 1uf9_A TT1252 protein; P-loop, 69.6 2.1 7.2E-05 32.9 2.1 17 71-87 9-25 (203)
448 1vht_A Dephospho-COA kinase; s 69.5 2.1 7.3E-05 33.5 2.1 17 71-87 5-21 (218)
449 3sr0_A Adenylate kinase; phosp 69.3 3.1 0.00011 32.5 3.0 17 72-88 2-18 (206)
450 1q57_A DNA primase/helicase; d 69.2 3.4 0.00011 37.2 3.6 52 67-121 239-290 (503)
451 2jeo_A Uridine-cytidine kinase 69.1 1.9 6.6E-05 34.6 1.8 19 69-87 24-42 (245)
452 3dmq_A RNA polymerase-associat 68.9 4.7 0.00016 39.5 4.8 77 100-185 502-584 (968)
453 1rz3_A Hypothetical protein rb 68.8 2.1 7.2E-05 33.2 1.9 18 70-87 22-39 (201)
454 3umf_A Adenylate kinase; rossm 68.7 2.5 8.7E-05 33.4 2.3 21 67-87 26-46 (217)
455 2r2a_A Uncharacterized protein 68.6 3.9 0.00013 31.8 3.4 18 72-89 7-24 (199)
456 2grj_A Dephospho-COA kinase; T 68.3 2.5 8.6E-05 32.7 2.2 17 72-88 14-30 (192)
457 3qkt_A DNA double-strand break 68.1 2.4 8.3E-05 36.0 2.3 18 71-88 24-41 (339)
458 1ypw_A Transitional endoplasmi 67.9 2 6.7E-05 41.3 1.8 19 69-87 237-255 (806)
459 2bbs_A Cystic fibrosis transme 67.9 2.2 7.6E-05 35.4 1.9 39 174-213 176-215 (290)
460 3rc3_A ATP-dependent RNA helic 67.0 24 0.00081 33.1 8.9 73 104-187 323-401 (677)
461 1odf_A YGR205W, hypothetical 3 66.8 2.7 9.3E-05 34.9 2.3 16 72-87 33-48 (290)
462 2pjz_A Hypothetical protein ST 66.5 5.8 0.0002 32.3 4.2 32 174-205 145-176 (263)
463 2dhr_A FTSH; AAA+ protein, hex 66.5 2.6 8.9E-05 38.0 2.2 52 31-87 26-81 (499)
464 1r6b_X CLPA protein; AAA+, N-t 66.3 2.8 9.7E-05 39.8 2.6 18 70-87 207-224 (758)
465 3fvq_A Fe(3+) IONS import ATP- 66.2 4.2 0.00014 34.9 3.4 17 69-85 29-45 (359)
466 2vhj_A Ntpase P4, P4; non- hyd 66.2 2.9 9.9E-05 35.4 2.3 21 69-89 122-142 (331)
467 2v3c_C SRP54, signal recogniti 65.9 4.9 0.00017 35.5 3.8 18 71-88 100-117 (432)
468 3aez_A Pantothenate kinase; tr 65.8 2.7 9.2E-05 35.3 2.1 18 69-86 89-106 (312)
469 2vp4_A Deoxynucleoside kinase; 65.6 2.8 9.5E-05 33.3 2.0 17 69-85 19-35 (230)
470 4a2w_A RIG-I, retinoic acid in 65.2 20 0.00068 35.0 8.3 98 80-184 611-721 (936)
471 3fho_A ATP-dependent RNA helic 65.1 2.4 8.3E-05 38.2 1.8 73 101-183 357-433 (508)
472 1ltq_A Polynucleotide kinase; 65.1 3 0.0001 34.4 2.3 16 72-87 4-19 (301)
473 1q3t_A Cytidylate kinase; nucl 65.1 3.5 0.00012 32.8 2.5 20 69-88 15-34 (236)
474 3tqf_A HPR(Ser) kinase; transf 65.1 3.7 0.00013 31.4 2.5 20 69-88 15-34 (181)
475 2onk_A Molybdate/tungstate ABC 65.0 2.8 9.6E-05 33.7 1.9 30 174-203 143-172 (240)
476 2yyz_A Sugar ABC transporter, 65.0 4.9 0.00017 34.5 3.5 30 174-203 150-179 (359)
477 3rlf_A Maltose/maltodextrin im 65.0 4.9 0.00017 34.8 3.6 30 174-203 150-179 (381)
478 3b5x_A Lipid A export ATP-bind 64.6 5.9 0.0002 36.4 4.3 39 174-213 497-535 (582)
479 2og2_A Putative signal recogni 64.5 3.7 0.00013 35.2 2.7 18 70-87 157-174 (359)
480 2qen_A Walker-type ATPase; unk 64.5 3.9 0.00013 34.2 2.9 18 69-86 30-47 (350)
481 3l0o_A Transcription terminati 64.4 8.4 0.00029 33.6 4.8 33 55-87 157-192 (427)
482 1svm_A Large T antigen; AAA+ f 64.0 4.3 0.00015 35.1 3.0 18 69-86 168-185 (377)
483 3sop_A Neuronal-specific septi 64.0 2.9 0.0001 34.2 1.9 14 72-85 4-17 (270)
484 3tui_C Methionine import ATP-b 63.9 5.4 0.00018 34.3 3.6 31 174-204 180-210 (366)
485 1r6b_X CLPA protein; AAA+, N-t 63.9 3 0.0001 39.7 2.2 17 72-88 490-506 (758)
486 1z47_A CYSA, putative ABC-tran 63.8 2.7 9.2E-05 36.1 1.7 17 69-85 40-56 (355)
487 3r20_A Cytidylate kinase; stru 63.7 3.9 0.00013 32.8 2.5 18 70-87 9-26 (233)
488 1v43_A Sugar-binding transport 63.4 5.5 0.00019 34.4 3.6 30 174-203 158-187 (372)
489 1uj2_A Uridine-cytidine kinase 63.4 3.4 0.00012 33.2 2.2 16 72-87 24-39 (252)
490 2it1_A 362AA long hypothetical 63.4 2.9 9.9E-05 36.0 1.8 30 174-203 150-179 (362)
491 4a2p_A RIG-I, retinoic acid in 63.3 8.7 0.0003 34.5 5.2 98 80-184 370-480 (556)
492 4eaq_A DTMP kinase, thymidylat 63.0 3.4 0.00012 32.9 2.1 19 69-87 25-43 (229)
493 2h57_A ADP-ribosylation factor 62.9 3 0.0001 31.6 1.7 16 70-85 21-36 (190)
494 3ake_A Cytidylate kinase; CMP 62.8 3.7 0.00013 31.6 2.2 16 72-87 4-19 (208)
495 1ko7_A HPR kinase/phosphatase; 62.8 16 0.00053 30.7 6.1 48 40-87 92-161 (314)
496 2f6r_A COA synthase, bifunctio 62.8 3.4 0.00011 34.0 2.1 17 71-87 76-92 (281)
497 2h17_A ADP-ribosylation factor 62.8 2.5 8.5E-05 31.8 1.2 19 67-85 18-36 (181)
498 3h1t_A Type I site-specific re 62.7 32 0.0011 31.3 8.9 80 99-184 437-526 (590)
499 4anj_A Unconventional myosin-V 62.5 11 0.00038 37.2 5.8 33 57-89 128-163 (1052)
500 4a82_A Cystic fibrosis transme 62.3 2.9 0.0001 38.4 1.8 38 174-212 494-531 (578)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.6e-46 Score=336.74 Aligned_cols=271 Identities=27% Similarity=0.406 Sum_probs=246.7
Q ss_pred cceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC
Q 022724 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS 99 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~ 99 (293)
++.+.....+.++.+|+++++++.++++++++||..|+|+|+++||.+++|+|+++++|||+|||++|++|++..+...+
T Consensus 43 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~ 122 (434)
T 2db3_A 43 PVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDP 122 (434)
T ss_dssp CEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC
T ss_pred eeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcc
Confidence 45566777888999999999999999999999999999999999999999999999999999999999999999886432
Q ss_pred -----CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCC
Q 022724 100 -----REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTR 174 (293)
Q Consensus 100 -----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~ 174 (293)
.++++||++|+++|+.|+.+.++++....++++..++|+.....+...+..+++|+|+||++|.+++.++...+.
T Consensus 123 ~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 123 HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFE 202 (434)
T ss_dssp CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCT
T ss_pred cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccc
Confidence 367999999999999999999999998888999999999998888888888999999999999999998888899
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhC--CCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEE
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYL--PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l--~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (293)
+++++|+||||++++.+|...+..++..+ ++..|++++|||+++.+..+...++.++..+.+........++.+.+..
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~ 282 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYE 282 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEE
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEE
Confidence 99999999999999999999999999885 5689999999999999999999999999999888777777888999888
Q ss_pred ecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 253 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 253 ~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+.... |...+.+++..... ++||||++++.|+.+++.|
T Consensus 283 ~~~~~-k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L 320 (434)
T 2db3_A 283 VNKYA-KRSKLIEILSEQAD-GTIVFVETKRGADFLASFL 320 (434)
T ss_dssp CCGGG-HHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHH
T ss_pred eCcHH-HHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHH
Confidence 88776 88888888887654 4999999999999999875
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.7e-44 Score=322.28 Aligned_cols=273 Identities=75% Similarity=1.170 Sum_probs=249.5
Q ss_pred cceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC
Q 022724 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS 99 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~ 99 (293)
....+....+++..+|+++++++.+.++++++||..|+|+|+++++.+.+|+++++++|||+|||++|++|+++.+....
T Consensus 24 ~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~ 103 (410)
T 2j0s_A 24 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 103 (410)
T ss_dssp SCCCCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS
T ss_pred ccccCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc
Confidence 44445566667788999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q 022724 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~i 179 (293)
.+.++||++|+++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||+++.+++..+...+.++++|
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~v 183 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKML 183 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEE
Confidence 67899999999999999999999999889999999999998888888888889999999999999999888888999999
Q ss_pred EecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccH
Q 022724 180 VLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259 (293)
Q Consensus 180 ViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k 259 (293)
|+||+|.+.+.++...+..+++.+++..|++++|||+++.+..+...++.+|..+...........+.+.+..+.....|
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 263 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWK 263 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHH
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhH
Confidence 99999999999999999999999999999999999999999888889999999888777677778889999988888778
Q ss_pred HHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 260 FDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 260 ~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...+..+++....+++||||++++.++.+++.|
T Consensus 264 ~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L 296 (410)
T 2j0s_A 264 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM 296 (410)
T ss_dssp HHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHH
Confidence 999999998877789999999999999998765
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-43 Score=317.60 Aligned_cols=271 Identities=30% Similarity=0.430 Sum_probs=237.5
Q ss_pred ceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC-
Q 022724 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS- 99 (293)
Q Consensus 21 ~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~- 99 (293)
....+...+.++.+|+++++++.+.+++.++||..|+|+|.++++.+.+|+|+++++|||+|||++|++|++..+....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 3445566678889999999999999999999999999999999999999999999999999999999999998875322
Q ss_pred -----------------CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHH
Q 022724 100 -----------------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV 162 (293)
Q Consensus 100 -----------------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l 162 (293)
.++++||++|+++|+.|+.+.++++....++++..++|+.....+...+..+++|+|+||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 236899999999999999999999988889999999999988888888888899999999999
Q ss_pred HHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhC--CC--CccEEEEEeecChhHHHHHHhcCCCCEEEEecC
Q 022724 163 CDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (293)
Q Consensus 163 ~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l--~~--~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~ 238 (293)
.+++..+.+.+.++++||+||+|.+.++++...+..++... +. ..|++++|||+++.+..+...++.++..+....
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99999888889999999999999999999999999988853 22 679999999999999999999999998888776
Q ss_pred CcccCCCceEEEEEecCcccHHHHHHHHHhhC-CCCcEEEEcccchhHHHHHhhC
Q 022724 239 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~-~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.......+.+.+..+.... +...+..+++.. .++++||||+++++++.+++.|
T Consensus 243 ~~~~~~~i~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L 296 (417)
T 2i4i_A 243 VGSTSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFL 296 (417)
T ss_dssp ---CCSSEEEEEEECCGGG-HHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCccCceEEEEEeccHh-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHH
Confidence 6666778888888877666 888888888876 4569999999999999998865
No 4
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=8.2e-43 Score=291.21 Aligned_cols=220 Identities=29% Similarity=0.459 Sum_probs=204.2
Q ss_pred cceeecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC-
Q 022724 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS- 98 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~- 98 (293)
...+.+...+.++.+|+++++++.+.+++.++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+...
T Consensus 16 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~ 95 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP 95 (242)
T ss_dssp TEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC
T ss_pred ceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc
Confidence 4455667788899999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred ----CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCC
Q 022724 99 ----SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTR 174 (293)
Q Consensus 99 ----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~ 174 (293)
..++++||++|+++|+.|+.+.++++....++++..++|+.+...+...+.++++|+|+||+++.+++..+...+.
T Consensus 96 ~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 96 FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCT
T ss_pred ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcc
Confidence 3467899999999999999999999998889999999999998888888888899999999999999988888899
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCC
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~ 239 (293)
+++++|+||+|++.+++|...+..+++.+++..|++++|||+++.+..++..++.+|..+.+...
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999988754
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=309.21 Aligned_cols=267 Identities=59% Similarity=0.993 Sum_probs=244.9
Q ss_pred ccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEE
Q 022724 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (293)
Q Consensus 26 ~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~l 105 (293)
....+...+|+++++++.+.+.+.++||..|+++|.++++.+.+|+++++++|||+|||++|++++++.+.....+.+++
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~l 112 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQAL 112 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEE
Confidence 33445667899999999999999999999999999999999999999999999999999999999999988766678999
Q ss_pred EEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecch
Q 022724 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (293)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~ 184 (293)
|++|+++|+.|+.+.++++....+..+..+.|+.....+...+. .+++|+|+||+++.+.+..+.+.+.++++||+||+
T Consensus 113 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 113 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp EECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred EEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECH
Confidence 99999999999999999999888999999999988777776665 67899999999999999888888899999999999
Q ss_pred hhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHH
Q 022724 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (293)
Q Consensus 185 h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 264 (293)
|.+.+.++...+..++..+++..|++++|||+++.+......++.++..+...........+.+.+..+.....+...+.
T Consensus 193 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 272 (414)
T 3eiq_A 193 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC 272 (414)
T ss_dssp HHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHH
T ss_pred HHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887777777888999998888887999999
Q ss_pred HHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 265 DLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 265 ~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+++....+++||||+++++++.+++.|
T Consensus 273 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l 300 (414)
T 3eiq_A 273 DLYETLTITQAVIFINTRRKVDWLTEKM 300 (414)
T ss_dssp HHHHSSCCSSCEEECSCHHHHHHHHHHH
T ss_pred HHHHhCCCCcEEEEeCCHHHHHHHHHHH
Confidence 9999888889999999999999998865
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3.3e-41 Score=301.21 Aligned_cols=260 Identities=40% Similarity=0.681 Sum_probs=232.5
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
...+|+++++++.+.+++.++||..|+|+|.++++.+.+|+++++++|||+|||++|++|++..+.....+.+++|++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 45689999999999999999999999999999999999999999999999999999999999988776667799999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
++|+.|+.+.++++....++++....|+.....+...+..+++|+|+||+++.+.+......+.+++++|+||+|++.+.
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 178 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh
Confidence 99999999999999988899999999998887777777788899999999999998888788999999999999999888
Q ss_pred ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhC
Q 022724 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (293)
Q Consensus 191 ~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~ 270 (293)
++...+..+...+++..|++++|||++..+..+....+.++..+.... ......+.+++..+.... |...+..+++..
T Consensus 179 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-k~~~l~~~~~~~ 256 (400)
T 1s2m_A 179 DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEERQ-KLHCLNTLFSKL 256 (400)
T ss_dssp HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGGG-HHHHHHHHHHHS
T ss_pred chHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechhh-HHHHHHHHHhhc
Confidence 888999999999988999999999999999999988888887765543 344566778877777665 888899999888
Q ss_pred CCCcEEEEcccchhHHHHHhhC
Q 022724 271 TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 271 ~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+++||||+++++++.+++.|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L 278 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKI 278 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHH
T ss_pred CCCcEEEEEecHHHHHHHHHHH
Confidence 8889999999999999998865
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=9.5e-42 Score=303.81 Aligned_cols=262 Identities=58% Similarity=0.965 Sum_probs=191.8
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
+...+|+++++++.+.+++..+||..|+|+|+++++.+.+|+++++++|||+|||++|++|++..+.....+++++|++|
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 97 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 97 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcC
Confidence 44678999999999999999999999999999999999999999999999999999999999999887767789999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc
Q 022724 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
+++|+.|+.+.++++....++++..++|+.........+. +++|+|+||+++...+......+.+++++|+||+|.+.+
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS 176 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhC
Confidence 9999999999999998888999999999988766655554 579999999999999988888889999999999999998
Q ss_pred cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhh
Q 022724 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (293)
Q Consensus 190 ~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~ 269 (293)
.++...+..++..+++..|++++|||+++.+......++.+|..+...........+.+.+..+.....+...+..+++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (394)
T 1fuu_A 177 SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDS 256 (394)
T ss_dssp TTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-------------------------------
T ss_pred CCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999998888776666677777777777666677788888887
Q ss_pred CCCCcEEEEcccchhHHHHHhhC
Q 022724 270 LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 270 ~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...+++||||+++++++.+++.|
T Consensus 257 ~~~~~~lVf~~~~~~~~~l~~~L 279 (394)
T 1fuu_A 257 ISVTQAVIFCNTRRKVEELTTKL 279 (394)
T ss_dssp -----------------------
T ss_pred CCCCcEEEEECCHHHHHHHHHHH
Confidence 77789999999999999998876
No 8
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-41 Score=285.18 Aligned_cols=230 Identities=29% Similarity=0.466 Sum_probs=196.2
Q ss_pred cceeecccCCc--cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhcc
Q 022724 20 KMVFETTEGVE--AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (293)
Q Consensus 20 ~~~~~~~~~~~--~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~ 97 (293)
+........+. ++.+|+++++++.+.+++.++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~ 87 (253)
T 1wrb_A 8 PVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 87 (253)
T ss_dssp CCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 34444444444 7789999999999999999999999999999999999999999999999999999999999988754
Q ss_pred CC---------CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc
Q 022724 98 SS---------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR 168 (293)
Q Consensus 98 ~~---------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~ 168 (293)
.. .++++||++|+++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||+++.+.+..
T Consensus 88 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~ 167 (253)
T 1wrb_A 88 QDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK 167 (253)
T ss_dssp TCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT
T ss_pred hccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc
Confidence 32 346899999999999999999999988888999999999988888888888899999999999999988
Q ss_pred CCCCCCCccEEEecchhhhhccccHHHHHHHHhhC--CC--CccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCC
Q 022724 169 KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLE 244 (293)
Q Consensus 169 ~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l--~~--~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (293)
+...+.+++++|+||+|++.+++|...+..++..+ +. ..|++++|||+++.+..+...++.+|..+.+...+....
T Consensus 168 ~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 247 (253)
T 1wrb_A 168 NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSD 247 (253)
T ss_dssp TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------
T ss_pred CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcC
Confidence 88889999999999999999999999999999854 33 679999999999999999999999999998887666666
Q ss_pred CceEE
Q 022724 245 GIKQF 249 (293)
Q Consensus 245 ~i~~~ 249 (293)
++.|+
T Consensus 248 ~i~q~ 252 (253)
T 1wrb_A 248 SIKQE 252 (253)
T ss_dssp -----
T ss_pred Cceec
Confidence 66654
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.9e-41 Score=299.56 Aligned_cols=266 Identities=37% Similarity=0.629 Sum_probs=233.5
Q ss_pred ecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhccCCCc
Q 022724 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSRE 101 (293)
Q Consensus 24 ~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~ 101 (293)
..+.+..+..+|+++++++.+.+++.++||..|+|+|.++++.+.++ +++++++|||+|||++|++|++..+.....+
T Consensus 16 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~ 95 (412)
T 3fht_A 16 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY 95 (412)
T ss_dssp CTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCS
T ss_pred cCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCC
Confidence 34445566789999999999999999999999999999999999987 8999999999999999999999999877777
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEE
Q 022724 102 VQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLL 179 (293)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-~~~~~~~l~~i 179 (293)
++++|++|+++|+.|+.+.++++.... +..+....++....... ..+++|+|+||+++.+++.+ +.+.+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 899999999999999999999987654 57777777776543321 34579999999999998865 56677899999
Q ss_pred Eecchhhhhc-cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCccc
Q 022724 180 VLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW 258 (293)
Q Consensus 180 ViDE~h~~~~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 258 (293)
|+||+|++.+ .++...+..+...++...|++++|||+++.+..+...++.++..+...........+.+.+..+.....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999987 578888889999999999999999999999999999999999988887777777888899888888777
Q ss_pred HHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 259 KFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 259 k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+...+..++....++++||||+++++|+.+++.|
T Consensus 253 ~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L 286 (412)
T 3fht_A 253 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 286 (412)
T ss_dssp HHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 8999999998888889999999999999999875
No 10
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.5e-41 Score=288.85 Aligned_cols=209 Identities=37% Similarity=0.593 Sum_probs=187.4
Q ss_pred cCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeE
Q 022724 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (293)
Q Consensus 27 ~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~ 104 (293)
.+..+..+|+++++++.+++++.++||..|+++|.++||.++.| +|+++++|||+|||++|++|+++.+.....++++
T Consensus 86 ~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~ 165 (300)
T 3fmo_B 86 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQC 165 (300)
T ss_dssp CCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceE
Confidence 34446789999999999999999999999999999999999987 9999999999999999999999999887778899
Q ss_pred EEEcCCHHHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEec
Q 022724 105 LILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLD 182 (293)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-~~~~~~~l~~iViD 182 (293)
||++|+++|+.|+.+.++.+.... ++.+....++....... ..+++|+|+||+++.+++.+ +.+.++++++||||
T Consensus 166 lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 999999999999999999988764 67888888876544322 35679999999999999866 66778999999999
Q ss_pred chhhhhc-cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecC
Q 022724 183 ESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (293)
Q Consensus 183 E~h~~~~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~ 238 (293)
|+|.+++ .++...+..+.+.+++.+|++++|||+++.+..++..++.+|..+.+..
T Consensus 243 Ead~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp THHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred CHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9999987 6899999999999999999999999999999999999999999887753
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.8e-40 Score=294.18 Aligned_cols=259 Identities=36% Similarity=0.612 Sum_probs=229.0
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
.+|+++++++.+.++|.++||..|+|+|.++++.+.+|+++++.+|||+|||++|++|++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999999877666779999999999
Q ss_pred HHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
|+.|+.+.++++.... ++++..++|+.........+.+ .++|+|+||+++..++......+.+++++|+||+|++.++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999987765 7889999999887766665543 4799999999999999888888999999999999999874
Q ss_pred -ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCc-ccCCCceEEEEEecCcccHHHHHHHHHh
Q 022724 191 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (293)
Q Consensus 191 -~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 268 (293)
++...+..++...++..|++++|||+++.+......++.+|..+...... .....+.+.+..+.... +...+..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGG-HHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchh-HHHHHHHHHH
Confidence 77888888898888899999999999999999999999999888776543 34456777777776665 8888999998
Q ss_pred hCCCCcEEEEcccchhHHHHHhhC
Q 022724 269 TLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 269 ~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...++++||||+++++++.+++.|
T Consensus 247 ~~~~~~~lvf~~~~~~~~~l~~~L 270 (391)
T 1xti_A 247 VLEFNQVVIFVKSVQRCIALAQLL 270 (391)
T ss_dssp HSCCSEEEEECSCHHHHHHHHHHH
T ss_pred hcCCCcEEEEeCcHHHHHHHHHHH
Confidence 888889999999999999998865
No 12
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.3e-41 Score=277.77 Aligned_cols=212 Identities=31% Similarity=0.485 Sum_probs=187.8
Q ss_pred ecccCCccccCccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC----
Q 022724 24 ETTEGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---- 98 (293)
Q Consensus 24 ~~~~~~~~~~~f~~-~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~---- 98 (293)
+....+++..+|++ +++++++.+++.++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+...
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 44556778899999 7999999999999999999999999999999999999999999999999999999887542
Q ss_pred --CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 99 --SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 99 --~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
..++++||++|+++|+.|+.+.++++. ..++++..++|+.....+...+.++++|+|+||+++.+++......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 256789999999999999999999986 45788889999988888888888889999999999999998888889999
Q ss_pred cEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEe
Q 022724 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (293)
Q Consensus 177 ~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~ 236 (293)
+++|+||+|++.++++...+..++..++++.|++++|||+++.+.+++..++.+|..+.+
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999999999999999999999999999999999987753
No 13
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.5e-41 Score=280.48 Aligned_cols=214 Identities=57% Similarity=0.945 Sum_probs=182.2
Q ss_pred ecccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCcee
Q 022724 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ 103 (293)
Q Consensus 24 ~~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~ 103 (293)
..+..+++..+|+++++++++.+++.++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+.....+++
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~ 100 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQ 100 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCC
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCce
Confidence 34445667889999999999999999999999999999999999999999999999999999999999999877666779
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEec
Q 022724 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLD 182 (293)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViD 182 (293)
+||++|+++|+.|+.+.++++....+..+..+.|+.....+...+..+ ++|+|+||+++.+++..+...+.++++||+|
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViD 180 (237)
T 3bor_A 101 ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD 180 (237)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEE
T ss_pred EEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEEC
Confidence 999999999999999999999888888998899988777666666554 8999999999999998888888999999999
Q ss_pred chhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEec
Q 022724 183 ESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (293)
Q Consensus 183 E~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~ 237 (293)
|+|.+.+.++...+..+++.++...|++++|||+++.+.+++..++.+|..+.+.
T Consensus 181 Eah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 181 EADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999887654
No 14
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.6e-40 Score=294.41 Aligned_cols=258 Identities=38% Similarity=0.626 Sum_probs=230.7
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
...+|+++++++.+.+++.+.||..|+|+|.++++.+.++ +++++++|||+|||++|+++++..+.....++++||++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4579999999999999999999999999999999999988 89999999999999999999999988776778999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhh
Q 022724 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~ 188 (293)
|+++|+.|+.+.++++....++.+....++...... ..+++|+|+||+++...+......+.++++||+||+|.+.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 999999999999999988888888887776543221 2367999999999999998888889999999999999998
Q ss_pred c-cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHH
Q 022724 189 S-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (293)
Q Consensus 189 ~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 267 (293)
+ .++...+..+...+++..|++++|||+++.+..+...++.++..+...........+.+.+..+.....+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHH
Confidence 7 578888889999999999999999999999999999999998888877777777788888888877777888899999
Q ss_pred hhCCCCcEEEEcccchhHHHHHhhC
Q 022724 268 DTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 268 ~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.....+++||||++++.|+.+++.|
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l 263 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKL 263 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHH
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHH
Confidence 8888889999999999999998865
No 15
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2e-40 Score=269.92 Aligned_cols=202 Identities=34% Similarity=0.640 Sum_probs=188.8
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
.+|+++++++++++++.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....++++||++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 57999999999999999999999999999999999999999999999999999999999999877667789999999999
Q ss_pred HHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc
Q 022724 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (293)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~ 191 (293)
|+.|+.+.++.+.... +.++..++|+.....+...+.++++|+|+||+++.+.+.++...+.+++++|+||+|.+.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999988776 788999999988887777777889999999999999998888889999999999999999889
Q ss_pred cHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEE
Q 022724 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 234 (293)
Q Consensus 192 ~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~ 234 (293)
+...+..++..+++..|++++|||+++.+.+++..++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999899999999999999999999999988765
No 16
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=279.33 Aligned_cols=209 Identities=33% Similarity=0.541 Sum_probs=193.7
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc
Q 022724 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (293)
Q Consensus 29 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~ 108 (293)
..+..+|+++++++.+.++++++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....++++||++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999988776778999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEecchhhh
Q 022724 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-~~~~~~~l~~iViDE~h~~ 187 (293)
|+++|+.|+.+.++++....++++..++|+.....+...+.++++|+|+||+++.+.+.+ ..+.+.++++||+||+|++
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 999999999999999998889999999999888777777778899999999999998876 5567899999999999999
Q ss_pred hccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEec
Q 022724 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~ 237 (293)
.+.++...+..+++.+++..|++++|||+++.+.++++.++.+|..+.+.
T Consensus 199 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999899999999999999999999999999887653
No 17
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=5.6e-41 Score=275.96 Aligned_cols=207 Identities=34% Similarity=0.557 Sum_probs=189.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
..+|+++++++++.+++.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....+++++|++|++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 46799999999999999999999999999999999999999999999999999999999999988766678999999999
Q ss_pred HHHHHHHHHHHHhhccC----CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 112 ELATQTEKVILAIGDFI----NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
+|+.|+.+.++++.... ++.+..++|+.......+.+.++++|+|+||+++.+.+..+...+.+++++|+||+|.+
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 99999999999988766 67888889988776665556667899999999999999888888899999999999999
Q ss_pred hccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecC
Q 022724 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~ 238 (293)
.++++...+..++..+++..|++++|||+++++.++++.++.+|..+.+..
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999998999999999999999999999999998876653
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.5e-41 Score=306.74 Aligned_cols=260 Identities=38% Similarity=0.639 Sum_probs=180.9
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEE
Q 022724 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil 107 (293)
.+..+|+++++++.+.++++++||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.....++++||+
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 44678999999999999999999999999999999999987 8999999999999999999999999887777899999
Q ss_pred cCCHHHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEecchh
Q 022724 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESD 185 (293)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~-~~~~~~~l~~iViDE~h 185 (293)
+|+++|+.|+.+.++.+.... ++.+....++....... ..+++|+|+||+++.+++.+ +.+.+.++++|||||+|
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 999999999999999887654 56777777665443221 23568999999999998866 55677999999999999
Q ss_pred hhhc-cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHH
Q 022724 186 EMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (293)
Q Consensus 186 ~~~~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 264 (293)
.+.+ .++...+..+.+.++..+|++++|||+++.+..+...++.++..+...........+.+.+..+.....+...+.
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 325 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 325 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHH
Confidence 9987 578888889999999999999999999999999999999999999888777777788888888887777888888
Q ss_pred HHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 265 DLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 265 ~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.++......++||||++++.|+.++..|
T Consensus 326 ~~~~~~~~~~~lvF~~s~~~~~~l~~~L 353 (479)
T 3fmp_B 326 NLYGAITIAQAMIFCHTRKTASWLAAEL 353 (479)
T ss_dssp ----------------------------
T ss_pred HHHhhccCCceEEEeCcHHHHHHHHHHH
Confidence 8888777789999999999999999876
No 19
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.9e-40 Score=273.58 Aligned_cols=212 Identities=55% Similarity=0.922 Sum_probs=185.1
Q ss_pred cCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEE
Q 022724 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (293)
Q Consensus 27 ~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~li 106 (293)
.-+.+..+|+++++++.+.+.+.++||..|+++|.++++.+.+|+++++++|||+|||++|++|+++.+.....++++||
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 87 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999887777789999
Q ss_pred EcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhh
Q 022724 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (293)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~ 186 (293)
++|+++|+.|+.+.++++....++++..++|+.....+...+.+ ++|+|+||+++.+.+.++...+.+++++|+||+|+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 99999999999999999988889999999998877666555544 89999999999999988888899999999999999
Q ss_pred hhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCC
Q 022724 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (293)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~ 239 (293)
+.++++...+..++..+++..|++++|||+++.+.++...++.+|..+.+...
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999988876543
No 20
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.4e-40 Score=274.19 Aligned_cols=211 Identities=34% Similarity=0.561 Sum_probs=186.6
Q ss_pred cccCCccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeE
Q 022724 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (293)
Q Consensus 25 ~~~~~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~ 104 (293)
....+.+..+|+++++++.+.++++++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+.....++++
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 95 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQI 95 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceE
Confidence 44455667889999999999999999999999999999999999999999999999999999999999998776667899
Q ss_pred EEEcCCHHHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecc
Q 022724 105 LILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (293)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE 183 (293)
||++|+++|+.|+.+.++++.... ++++..++|+.....+...+ .+++|+|+||+++.+++..+.+.+.+++++|+||
T Consensus 96 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 999999999999999999987665 78899999988776665555 4689999999999999988888889999999999
Q ss_pred hhhhhccc-cHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEe
Q 022724 184 SDEMLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (293)
Q Consensus 184 ~h~~~~~~-~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~ 236 (293)
+|++.+++ |...+..+++.+++..|++++|||+++.+.+++..++.+|..+.+
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999887 999999999999989999999999999999999999999987754
No 21
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.3e-39 Score=268.36 Aligned_cols=208 Identities=28% Similarity=0.499 Sum_probs=186.6
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC----CCceeE
Q 022724 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQA 104 (293)
Q Consensus 29 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~----~~~~~~ 104 (293)
+.+..+|+++++++.+.+++.+.||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+... ..++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 4567789999999999999999999999999999999999999999999999999999999999887542 235689
Q ss_pred EEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEecc
Q 022724 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDE 183 (293)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~-~~~~~~l~~iViDE 183 (293)
+|++|+++|+.|+.+.++.+....++++..++|+.....+...+ .+++|+|+||+++.+.+... .+.+.+++++|+||
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999888889999999998777666555 46899999999999987664 56788999999999
Q ss_pred hhhhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEec
Q 022724 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (293)
Q Consensus 184 ~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~ 237 (293)
+|++.++++...+..+++.+++..|++++|||+++.+.++.+.++.+|..+.+.
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999888765
No 22
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=5.3e-39 Score=261.67 Aligned_cols=201 Identities=35% Similarity=0.584 Sum_probs=184.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC---CCceeEEEEcCC
Q 022724 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPT 110 (293)
Q Consensus 34 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~---~~~~~~lil~P~ 110 (293)
+|+++++++++.+++.+.||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999988642 346789999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
++|+.|+.+.++++... +++..++|+.....+...+.++++|+|+||+++.+.+..+...+.+++++|+||+|.+.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999988654 6778888888877777777778999999999999999888888999999999999999999
Q ss_pred ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEe
Q 022724 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (293)
Q Consensus 191 ~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~ 236 (293)
++...+..+++.+++..|++++|||+++.+.++.+.++.+|..+.+
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999989999999999999999999999999988765
No 23
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.7e-39 Score=264.61 Aligned_cols=206 Identities=35% Similarity=0.594 Sum_probs=185.3
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
....+|+++++++.+.+++.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....+++++|++|
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 90 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 90 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeC
Confidence 34467999999999999999999999999999999999999999999999999999999999999877666679999999
Q ss_pred CHHHHHHHHHHHHHhhccC-CceEEEEECCcchHHHHHHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 110 TRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
+++|+.|+.+.++++.... ++++..++|+.....+...+.+ .++|+|+||+++..++......+.+++++|+||+|++
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 91 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 9999999999999988766 7899999999887776666653 5699999999999999888888999999999999999
Q ss_pred hc-cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEE
Q 022724 188 LS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 235 (293)
Q Consensus 188 ~~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~ 235 (293)
.+ .++...+..+++.+++..|++++|||+++.+.++.+.++.+|..+.
T Consensus 171 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 171 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred hcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 87 4788889999999988999999999999999999999999998764
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-38 Score=278.35 Aligned_cols=253 Identities=34% Similarity=0.592 Sum_probs=221.1
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC-CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
..+|+++++++.+.+++++.||..|+|+|.++++.+.++ +++++.+|||+|||++|+++++..+... .+.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 357999999999999999999999999999999999988 7999999999999999999999887654 35689999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcc
Q 022724 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~ 190 (293)
++|+.|+.+.++++....++.+...+|+.....+...+. +++|+|+||+++.+.+..+...+.+++++|+||+|.+.+.
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 999999999999998888889999999988776666554 5799999999999999888888899999999999999999
Q ss_pred ccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhC
Q 022724 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (293)
Q Consensus 191 ~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~ 270 (293)
++...+..++..+++..+++++|||+++........++.++..+..... ..+.+.+..+.... +...+..+++ .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~l~~~l~-~ 236 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNENE-RFEALCRLLK-N 236 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCGGG-HHHHHHHHHC-S
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeChHH-HHHHHHHHHh-c
Confidence 9999999999999889999999999999998888888887666554322 35677777776655 8888888886 4
Q ss_pred CCCcEEEEcccchhHHHHHhhC
Q 022724 271 TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 271 ~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+.++||||+++++++.+++.|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L 258 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASML 258 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHH
Confidence 4579999999999999998865
No 25
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=269.07 Aligned_cols=200 Identities=29% Similarity=0.509 Sum_probs=179.0
Q ss_pred cCcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC----CceeEEE
Q 022724 33 TSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALI 106 (293)
Q Consensus 33 ~~f~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~----~~~~~li 106 (293)
.+|++++ +++.++++++++||..|+++|.++++.+..|+|+++++|||+|||++|++|++..+.... .+.++||
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 4566666 999999999999999999999999999999999999999999999999999998876422 3568999
Q ss_pred EcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEecchh
Q 022724 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESD 185 (293)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~-~~~~~~l~~iViDE~h 185 (293)
++|+++|+.|+.+.++++....+..+..+.|+.....+...+..+++|+|+||+++...+... .+.+.++++|||||+|
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 999999999999999999988899999999999888888888788999999999999977664 4678999999999999
Q ss_pred hhhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCE
Q 022724 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPV 232 (293)
Q Consensus 186 ~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~ 232 (293)
++.+++|...+..+++.+++.+|++++|||+++.+.++.+.++.++.
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999998876543
No 26
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.4e-39 Score=267.07 Aligned_cols=220 Identities=24% Similarity=0.451 Sum_probs=188.5
Q ss_pred cceeecccCCccccCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhh
Q 022724 20 KMVFETTEGVEAITSFDAM----GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (293)
Q Consensus 20 ~~~~~~~~~~~~~~~f~~~----~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l 95 (293)
...++....+.++.+|+++ ++++++.+++.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+
T Consensus 12 ~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 12 KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3455667778889999987 899999999999999999999999999999999999999999999999999999988
Q ss_pred ccC-CCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHH-HHHhcCCcEEEeChHHHHHHHhcC--CC
Q 022724 96 DTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI-RKLEHGVHVVSGTPGRVCDMIKRK--TL 171 (293)
Q Consensus 96 ~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ilV~Tp~~l~~~l~~~--~~ 171 (293)
... ..++++||++|+++|+.|+.+.++++....++++..++++....... .....+++|+|+||+++..++... ..
T Consensus 92 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 171 (245)
T 3dkp_A 92 KQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI 171 (245)
T ss_dssp CSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSC
T ss_pred hhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCc
Confidence 643 35678999999999999999999999888888887777664333222 122456799999999999998775 56
Q ss_pred CCCCccEEEecchhhhhcc---ccHHHHHHHHhhCC-CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCC
Q 022724 172 RTRAIKLLVLDESDEMLSR---GFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (293)
Q Consensus 172 ~~~~l~~iViDE~h~~~~~---~~~~~~~~i~~~l~-~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~ 239 (293)
.+.+++++|+||+|.+.++ ++...+..++..+. ...|++++|||+++++..+++.++.+|..+.+...
T Consensus 172 ~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 172 DLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 7899999999999999874 67788888877764 57899999999999999999999999999988653
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.8e-38 Score=292.41 Aligned_cols=263 Identities=25% Similarity=0.387 Sum_probs=210.5
Q ss_pred ccccCcccCC----CCHHHHHHHHHCCCCCCcHHHHHHHHhhh--cCCcEEEEcCCCChhHHHHHHHHHhhhccCC----
Q 022724 30 EAITSFDAMG----IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---- 99 (293)
Q Consensus 30 ~~~~~f~~~~----l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~---- 99 (293)
....+|+++. +++++++++.++||..|+|+|.++++.++ .|+++++++|||+|||++|++|+++.+....
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 93 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 3344555553 99999999999999999999999999999 7889999999999999999999998876542
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhc----cCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcC-CCCC
Q 022724 100 REVQALILSPTRELATQTEKVILAIGD----FINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK-TLRT 173 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~-~~~~ 173 (293)
.++++||++|+++|+.|+.+.++++.. .....+....|+.....+...+. .+++|+|+||+++..++... ...+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 356899999999999999999998753 23467788888888777776664 47899999999999988764 4457
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCC-------CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCC----ccc
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD----ELT 242 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~-------~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 242 (293)
+++++|||||||++.+++|...+..+...++ ...|++++|||+++.+..+...++.++..+.+... ...
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 8899999999999999999988888877653 36799999999999999999999998877766432 223
Q ss_pred CCCceEEEEEecCcccHH-HH---HHHHHhh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 243 LEGIKQFFVAVEREEWKF-DT---LCDLYDT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 243 ~~~i~~~~~~~~~~~~k~-~~---l~~l~~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...+.+.+........+. .. +...+.. ..+.++||||+|++.|+.++..|
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L 308 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 308 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHH
Confidence 445667776666543232 22 2333333 45679999999999999998765
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8e-37 Score=266.33 Aligned_cols=241 Identities=24% Similarity=0.454 Sum_probs=207.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~ 119 (293)
+++++.++++++||..|+|+|+++++.+.+|+++++.+|||+|||++|++|++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999874 4689999999999999999
Q ss_pred HHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHH
Q 022724 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (293)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i 199 (293)
.++++....+.++..++|+.....+...+.+ ++|+|+||+++.+.+......+.+++++|+||+|++.++++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 9999988888999999999887776666544 799999999999998887778899999999999999999999999999
Q ss_pred HhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEc
Q 022724 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFC 279 (293)
Q Consensus 200 ~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~ 279 (293)
+...+...+++++|||+++........++.++..+... .....+.+.+..+.... +. ....+....++++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW-RS--KVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS-HH--HHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH-HH--HHHHHHhCCCCcEEEEE
Confidence 99999899999999999999999998888887766433 23345566666665543 22 23555666778999999
Q ss_pred ccchhHHHHHhhCC
Q 022724 280 NTKRKVLLLVLQFP 293 (293)
Q Consensus 280 ~s~~~a~~l~~~L~ 293 (293)
+++++++.+++.|.
T Consensus 228 ~~~~~~~~l~~~l~ 241 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD 241 (337)
T ss_dssp SCHHHHHHHHTTCT
T ss_pred cCHHHHHHHHHHhh
Confidence 99999999998773
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.9e-37 Score=285.89 Aligned_cols=253 Identities=26% Similarity=0.394 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhh--cCCcEEEEcCCCChhHHHHHHHHHhhhccCC----CceeEEEEcCCHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTREL 113 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~l 113 (293)
+++++.+++.++||..|+|+|.++++.++ .++++++++|||+|||++|++|+++.+.... .++++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999999886543 24689999999999
Q ss_pred HHHHHHHHHHhhcc----CCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcC-CCCCCCccEEEecchhhh
Q 022724 114 ATQTEKVILAIGDF----INIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 114 ~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~l~~~-~~~~~~l~~iViDE~h~~ 187 (293)
+.|+.+.++++... ....+..+.|+.....+...+ ..+++|+|+||+++.+++.+. ...++++++|||||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987532 245677888888777776665 457899999999999988664 345788999999999999
Q ss_pred hccccHHHHHHHHhhCC-------CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCc----ccCCCceEEEEEecCc
Q 022724 188 LSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE----LTLEGIKQFFVAVERE 256 (293)
Q Consensus 188 ~~~~~~~~~~~i~~~l~-------~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~ 256 (293)
.+++|...+..+...++ ...|++++|||+++.+..+...++.++..+...... .....+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999988888776653 367999999999999999999999888777654322 2334566777666654
Q ss_pred ccHHHH----HHHHHhh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 257 EWKFDT----LCDLYDT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 257 ~~k~~~----l~~l~~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+... +...+.. ..+.++||||+|++.|+.++..|
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L 359 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 359 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHH
Confidence 433322 2233333 45679999999999999998865
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.5e-38 Score=288.04 Aligned_cols=260 Identities=33% Similarity=0.530 Sum_probs=195.1
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcC--CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEE
Q 022724 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (293)
Q Consensus 29 ~~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~--~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~li 106 (293)
+.....|...++++.+.+.+.+.||..|+++|.++++.+.++ +++++++|||+|||++|+++++..+.....++++||
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLv 194 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAIC 194 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEE
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEE
Confidence 334455667788999999999999999999999999999987 999999999999999999999999988776779999
Q ss_pred EcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhh
Q 022724 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (293)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~ 186 (293)
++|+++|+.|+.+.++++....++.+....++..... ...+++|+|+||+++...+......+.++++|||||+|.
T Consensus 195 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp ECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred EECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 9999999999999999998777766665555443221 223679999999999999988888899999999999999
Q ss_pred hhc-cccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHH
Q 022724 187 MLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265 (293)
Q Consensus 187 ~~~-~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 265 (293)
+.+ .++...+..+...+++..|++++|||+++.+..+...+..++..+...........+.+.+..+.....+...+..
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 350 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVE 350 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHH
Confidence 987 5788889999999999999999999999999999999999998887776666667777888877777768888999
Q ss_pred HHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 266 LYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 266 l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+++...++++||||++++.|+.++..|
T Consensus 351 ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 351 LYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp HHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred HHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 998888889999999999999998765
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.7e-35 Score=264.23 Aligned_cols=234 Identities=18% Similarity=0.219 Sum_probs=181.7
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 43 DLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 43 ~i~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
++.+.+++ +|| .|+|+|.++++.+.+|+|+++++|||+|||++|+++++..+. .+++++|++|+++|+.|+.+.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHH
Confidence 45555655 466 699999999999999999999999999999999999888763 3578999999999999999999
Q ss_pred HHhhccCCceEEEEECCcch---HHHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc--------
Q 022724 122 LAIGDFINIQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-------- 189 (293)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~-------- 189 (293)
+++.. .++++..++|+.+. ..+...+..+ ++|+|+||+++.+.+.. +.+.++++||+||+|++.+
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhH
Confidence 99887 88999999999887 4555666555 89999999999887764 5677899999999997754
Q ss_pred ---cccHHH-HHHHHhhCC-----------CCccEEEEEee-cChhHH-HHHHhcCCCCEEEEecCCcccCCCceEEEEE
Q 022724 190 ---RGFKDQ-IYDVYRYLP-----------PDLQVVLISAT-LPHEIL-EMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (293)
Q Consensus 190 ---~~~~~~-~~~i~~~l~-----------~~~q~v~~SAt-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (293)
.+|... +..+++.++ ...|++++||| .++.+. .+...++. +.+........++.+.+..
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~ 237 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRIS 237 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEES
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeec
Confidence 556666 777777765 78999999999 565443 22222221 2222333445567777665
Q ss_pred ecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 253 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 253 ~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+ .+...+..+++. .++++||||++++.|+.++..|
T Consensus 238 ~----~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L 272 (414)
T 3oiy_A 238 S----RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYL 272 (414)
T ss_dssp S----CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHH
T ss_pred c----CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHH
Confidence 4 255666777766 3479999999999999998865
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.6e-34 Score=265.61 Aligned_cols=247 Identities=13% Similarity=0.193 Sum_probs=184.3
Q ss_pred CcccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 34 SFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 34 ~f~~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
.+.++++++.+.+.|++ +||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ++++||++|+++
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~ 95 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLIS 95 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHH
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHH
Confidence 44468899999999998 69999999999999999999999999999999999999999763 358999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEECCcchHHHHHH---H---hcCCcEEEeChHHHHH------HHhcCCCCCCCccEEE
Q 022724 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L---EHGVHVVSGTPGRVCD------MIKRKTLRTRAIKLLV 180 (293)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~ilV~Tp~~l~~------~l~~~~~~~~~l~~iV 180 (293)
|+.|+.+.++++ ++++..++++....+.... + ...++|+|+||+++.. .+. ....+.++++||
T Consensus 96 L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~~~~~i~~iV 170 (591)
T 2v1x_A 96 LMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHHHTTCEEEEE
T ss_pred HHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhhhccCCcEEE
Confidence 999999999886 6778888888766544322 2 3568999999998742 222 234467899999
Q ss_pred ecchhhhhccc--cHHHHHH--HHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecC-
Q 022724 181 LDESDEMLSRG--FKDQIYD--VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER- 255 (293)
Q Consensus 181 iDE~h~~~~~~--~~~~~~~--i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 255 (293)
|||||++.+++ |...+.. .+....+..+++++|||+++.+...+..++..+....+.. .....++...+.....
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~ 249 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSN 249 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSS
T ss_pred EECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCc
Confidence 99999998876 5554433 2333335789999999999988877776665433222221 1223344333332221
Q ss_pred cccHHHHHHHHHhh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 256 EEWKFDTLCDLYDT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 256 ~~~k~~~l~~l~~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...+...+..++.. ..+.++||||+|+++|+.++..|
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L 287 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSL 287 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHH
Confidence 12345566666654 36679999999999999999875
No 33
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.2e-34 Score=272.40 Aligned_cols=245 Identities=16% Similarity=0.207 Sum_probs=190.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 34 ~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
+|+++++++++.+.+++.||..|+++|.++++. +.+++++++++|||+|||++|.+++++.+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 589999999999999999999999999999998 88999999999999999999999999887643 468999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc
Q 022724 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (293)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~ 192 (293)
|+.|+.+.++++.. .++++..++|+...... ...+++|+|+||+++..++......++++++|||||+|.+.+.++
T Consensus 80 La~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 99999999975543 48899999987654432 123579999999999998888766688999999999999988888
Q ss_pred HHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEE------EecC----cccHHHH
Q 022724 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV------AVER----EEWKFDT 262 (293)
Q Consensus 193 ~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~----~~~k~~~ 262 (293)
+..+..++..++...|+|++|||+++. ..+..++. .+ .+... ..+..+...+. .... ...+...
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~l~-~~-~~~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGNP-EELAEWLN-AE-LIVSD---WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHHTT-EE-EEECC---CCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHHhC-Cc-ccCCC---CCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 999999988887789999999999863 44554432 11 11111 11111222111 1110 1224555
Q ss_pred HHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 263 LCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 263 l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+.+.+. .++++||||+++++|+.++..|
T Consensus 230 ~~~~~~--~~~~~LVF~~sr~~~~~~a~~L 257 (720)
T 2zj8_A 230 VYDAIR--KKKGALIFVNMRRKAERVALEL 257 (720)
T ss_dssp HHHHHH--TTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHh--CCCCEEEEecCHHHHHHHHHHH
Confidence 555554 3579999999999999998764
No 34
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.3e-33 Score=256.32 Aligned_cols=243 Identities=15% Similarity=0.236 Sum_probs=185.0
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 33 TSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
.+|+++++++++.+.|++ +||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ..++||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 579999999999999998 89999999999999999999999999999999999999999854 24799999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHH---H-HhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---K-LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
+|+.|+.+.++.+ ++.+..++++........ . ....++|+++||+++........+...++++|||||+|++
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999999988864 677778888776554332 2 2356899999999996422222234578999999999999
Q ss_pred hccc--cHHHHH---HHHhhCCCCccEEEEEeecChhHHHHHH-hc-CCCCEEEEecCCcccCCCceEEEEEecCcccHH
Q 022724 188 LSRG--FKDQIY---DVYRYLPPDLQVVLISATLPHEILEMTT-KF-MTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (293)
Q Consensus 188 ~~~~--~~~~~~---~i~~~l~~~~q~v~~SAt~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 260 (293)
.+++ |...+. .+...+ +..+++++|||+++.+...+. .+ +.++..+... ....++... ..... .+.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~~l~~~--v~~~~-~~~ 224 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS---FDRPNIRYM--LMEKF-KPL 224 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC---CCCTTEEEE--EEECS-SHH
T ss_pred CcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC---CCCCceEEE--EEeCC-CHH
Confidence 8876 544443 344455 468999999999988665333 33 3345443322 122333322 22333 377
Q ss_pred HHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 261 DTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 261 ~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+..++....+.++||||+|+++++.+++.|
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L 256 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARL 256 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHH
Confidence 78888888877789999999999999999875
No 35
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.2e-33 Score=263.73 Aligned_cols=245 Identities=13% Similarity=0.175 Sum_probs=188.6
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
.+|+++++++++.+.+++.||..|+|+|.++++. +.+++++++++|||+|||+++.+++++.+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 5799999999999999999999999999999999 78899999999999999999999999887643 46999999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc
Q 022724 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~ 191 (293)
+|+.|+.+.++.+. ..|+++...+|+...... .+ .+++|+|+||+++..++.+....++++++|||||+|.+.+..
T Consensus 86 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 99999999996554 458888888887654432 12 367999999999999888876668899999999999998778
Q ss_pred cHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEE------------EEec-----
Q 022724 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFF------------VAVE----- 254 (293)
Q Consensus 192 ~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~----- 254 (293)
++..+..++.+++ ..|+|++|||+++. ..+..++.. + .+... ..+..+...+ ...+
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l~~-~-~~~~~---~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWLGA-E-PVATN---WRPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHHTC-E-EEECC---CCSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHhCC-C-ccCCC---CCCCCceEEEEecCCcccceeeecCcchhhh
Confidence 8888888887776 89999999999763 445544421 1 11111 1111121111 1111
Q ss_pred --CcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 255 --REEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 255 --~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
....+...+.+.+. .++++||||+++++++.++..|
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L 272 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKI 272 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHH
Confidence 01224455555553 4579999999999999998764
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-33 Score=272.01 Aligned_cols=246 Identities=17% Similarity=0.221 Sum_probs=194.4
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
...|+.+++++.+...+...++..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.. +.+++|++|++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptr 237 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIK 237 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSH
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcH
Confidence 346777888877777776666777999999999999999999999999999999999999988854 56899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc
Q 022724 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~ 191 (293)
+|+.|+++.+.++.. .+..++|+.+.. .+++|+|+||++|.+++.++...+.++++|||||+|.+.+++
T Consensus 238 aLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~ 306 (1108)
T 3l9o_A 238 ALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE 306 (1108)
T ss_dssp HHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH
T ss_pred HHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc
Confidence 999999999998765 566677776533 457999999999999998887778899999999999999999
Q ss_pred cHHHHHHHHhhCCCCccEEEEEeecChh--HHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecC---------c----
Q 022724 192 FKDQIYDVYRYLPPDLQVVLISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER---------E---- 256 (293)
Q Consensus 192 ~~~~~~~i~~~l~~~~q~v~~SAt~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~---- 256 (293)
++..+..++..+++..|+++||||+++. +..++......+..+...... +..+.+++..... .
T Consensus 307 rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~ 384 (1108)
T 3l9o_A 307 RGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFR 384 (1108)
T ss_dssp HHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEEC
T ss_pred hHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchh
Confidence 9999999999999999999999999875 446666666666666554322 2223333221110 0
Q ss_pred -----------------------------------------ccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhCC
Q 022724 257 -----------------------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQFP 293 (293)
Q Consensus 257 -----------------------------------------~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L~ 293 (293)
..+...+...+......++||||++++.|+.++..|.
T Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~ 462 (1108)
T 3l9o_A 385 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMS 462 (1108)
T ss_dssp HHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHH
Confidence 1122234444455566799999999999999998763
No 37
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=7.4e-34 Score=270.64 Aligned_cols=244 Identities=14% Similarity=0.161 Sum_probs=184.4
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 34 SFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 34 ~f~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
+|++++ +++.+.+.+++.||..|+|+|.++++.+.+++++++++|||+|||++|.+++++.+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 588888 9999999999999999999999999999999999999999999999999999988764 46899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc
Q 022724 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (293)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~ 191 (293)
+|+.|+.+.++.+. ..|+++...+|+...... ...+++|+|+||+++..++.+....++++++|||||+|.+.+++
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996554 458889999888655432 12367999999999999988876668899999999999998877
Q ss_pred cHHHHHHHHhhC---CCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEE------EecC------c
Q 022724 192 FKDQIYDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV------AVER------E 256 (293)
Q Consensus 192 ~~~~~~~i~~~l---~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~------~ 256 (293)
++..+..++..+ ++..|+|++|||+++ ...+..++. .+ .+... ..+..+...+. ..+. .
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~-~~-~~~~~---~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLD-AD-YYVSD---WRPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTT-CE-EEECC---CCSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhC-CC-cccCC---CCCccceEEEeeCCeeeccCcchhhhhh
Confidence 777777766655 578999999999986 355555443 22 12111 11112222111 1111 0
Q ss_pred ccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 257 EWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 257 ~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+...+.+.+. .++++||||+++++++.++..|
T Consensus 229 ~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L 262 (702)
T 2p6r_A 229 VKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKL 262 (702)
T ss_dssp CCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHH
Confidence 114455555554 4579999999999999998764
No 38
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.5e-32 Score=270.35 Aligned_cols=227 Identities=17% Similarity=0.227 Sum_probs=181.8
Q ss_pred HCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.+|| .|+|+|.++++.+++|+|+++++|||+|||++|+++++..+. .++++||++|+++|+.|+.+.++++. ..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~ 148 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-DEK 148 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-CTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-CCC
Confidence 4688 599999999999999999999999999999999988888773 36789999999999999999999977 778
Q ss_pred ceEEEEECCcch---HHHHHHHhcC-CcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc-----------cccHH
Q 022724 130 IQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-----------RGFKD 194 (293)
Q Consensus 130 ~~~~~~~~~~~~---~~~~~~~~~~-~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~-----------~~~~~ 194 (293)
+++..++|+.+. ..+...+.++ ++|+|+||+++.+++.. +.+.++++|||||+|++.. .+|..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 999999999887 5566667665 89999999999887764 5678899999999986553 67777
Q ss_pred H-HHHHHhhCC-----------CCccEEEEEee-cChhHHH-HHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHH
Q 022724 195 Q-IYDVYRYLP-----------PDLQVVLISAT-LPHEILE-MTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (293)
Q Consensus 195 ~-~~~i~~~l~-----------~~~q~v~~SAt-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 260 (293)
. +..+++.++ ...|++++||| .+..+.. +....+. +.+........++.+.+..++ +.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~~----k~ 298 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISSR----SK 298 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESCC----CH
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEecC----HH
Confidence 7 788888776 78999999999 5555442 3333322 233334445667778777552 56
Q ss_pred HHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 261 DTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 261 ~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+..+++.. ++++||||++++.|+.++..|
T Consensus 299 ~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L 329 (1104)
T 4ddu_A 299 EKLVELLEIF-RDGILIFAQTEEEGKELYEYL 329 (1104)
T ss_dssp HHHHHHHHHH-CSSEEEEESSSHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCEEEEECcHHHHHHHHHHH
Confidence 6667777663 489999999999999999875
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.98 E-value=7e-33 Score=272.58 Aligned_cols=230 Identities=16% Similarity=0.213 Sum_probs=181.7
Q ss_pred HHHH-HCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 46 RGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 46 ~~l~-~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
+.+. .+||. | ++|.++++.+++|+|+++++|||+|||+ |.+|++..+... ++++||++|+++|+.|+.+.++++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHH
Confidence 4444 47999 9 9999999999999999999999999998 888888877653 579999999999999999999999
Q ss_pred hccCCc----eEEEEECCcchHHH---HHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHH
Q 022724 125 GDFINI----QAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (293)
Q Consensus 125 ~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~ 197 (293)
....++ ++..++|+.+...+ ...+.+ ++|+|+||++|.+++.+ ++++++|||||+|++++ ++..+.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 988888 89999999877663 344455 89999999999987665 66899999999999987 567777
Q ss_pred HHHhhCC-----------CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHH
Q 022724 198 DVYRYLP-----------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (293)
Q Consensus 198 ~i~~~l~-----------~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 266 (293)
.+...++ ...|++++|||+++. ..+...++.++..+.+........++.+.+. . ..+...+..+
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~-~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---N-DESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---S-CCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---c-hhHHHHHHHH
Confidence 7777773 467899999999887 4333333333333333434444556777666 2 2366667777
Q ss_pred HhhCCCCcEEEEcccchhHHHHHhhCC
Q 022724 267 YDTLTITQAVIFCNTKRKVLLLVLQFP 293 (293)
Q Consensus 267 ~~~~~~~~~iIF~~s~~~a~~l~~~L~ 293 (293)
++.. ++++||||+++++|+.+++.|.
T Consensus 271 l~~~-~~~~LVF~~t~~~a~~l~~~L~ 296 (1054)
T 1gku_B 271 LEKL-GTGGIIYARTGEEAEEIYESLK 296 (1054)
T ss_dssp HTTS-CSCEEEEESSHHHHHHHHHTTT
T ss_pred Hhhc-CCCEEEEEcCHHHHHHHHHHHh
Confidence 7765 4789999999999999998874
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.8e-31 Score=254.28 Aligned_cols=173 Identities=16% Similarity=0.237 Sum_probs=140.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHH
Q 022724 45 LRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVIL 122 (293)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~ 122 (293)
..++..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...+. +.++||++|+++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999988765432 2689999999999999999999
Q ss_pred HhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEecchhhhhccc-cHHHHHHHH
Q 022724 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVY 200 (293)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~-~~~~l~~iViDE~h~~~~~~-~~~~~~~i~ 200 (293)
++....++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.. +...+...+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 9988888999999999876666666666789999999999999988766 78899999999999986553 233332222
Q ss_pred hh-----CCCCccEEEEEeecC
Q 022724 201 RY-----LPPDLQVVLISATLP 217 (293)
Q Consensus 201 ~~-----l~~~~q~v~~SAt~~ 217 (293)
.. .++..+++++|||+.
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCC
T ss_pred HHhhcccCCCCCeEEEEeCccc
Confidence 22 246789999999996
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=3.3e-30 Score=239.15 Aligned_cols=166 Identities=15% Similarity=0.183 Sum_probs=133.5
Q ss_pred CCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
+...|+|+|.++++.+++|+++++++|||+|||++|++|+++.+...+. ++++||++|+++|+.|+.+.++++....+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4457999999999999999999999999999999999999998876542 56899999999999999999999988889
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEecchhhhhccccHHHH-HHHHhh----C
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGFKDQI-YDVYRY----L 203 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~-~~~~l~~iViDE~h~~~~~~~~~~~-~~i~~~----l 203 (293)
+++..++|+.....+...+..+++|+|+||+++.+.+..+.+ .+.++++|||||+|++.+++....+ ..++.. .
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 999999999877766666666789999999999999988777 7899999999999999876543332 222222 1
Q ss_pred CCCccEEEEEeecC
Q 022724 204 PPDLQVVLISATLP 217 (293)
Q Consensus 204 ~~~~q~v~~SAt~~ 217 (293)
.+..|++++|||++
T Consensus 164 ~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 164 SQLPQILGLTASVG 177 (556)
T ss_dssp --CCEEEEEESCCC
T ss_pred CCCCeEEEEeCCcc
Confidence 35689999999995
No 42
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-30 Score=249.94 Aligned_cols=228 Identities=18% Similarity=0.274 Sum_probs=176.7
Q ss_pred HHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccC
Q 022724 49 YQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (293)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (293)
..++|. |+++|.++++.+.+|+++++++|||+|||++|.++++..+.. +.+++|++|+++|+.|+++.+.++..
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 345666 999999999999999999999999999999999999887754 56999999999999999999998765
Q ss_pred CceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCcc
Q 022724 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (293)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q 208 (293)
++..++|+.+.. .+++|+|+||+++.+++.++...+.++++|||||+|.+.+.+++..+..++..++...|
T Consensus 155 --~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~ 225 (1010)
T 2xgj_A 155 --DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 225 (1010)
T ss_dssp --CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCE
T ss_pred --CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCe
Confidence 566778876543 34789999999999999888778899999999999999998889999999999999999
Q ss_pred EEEEEeecChhHH--HHHHhcCCCCEEEEecCCcccCCCceEEEEEec---------Cc---------------------
Q 022724 209 VVLISATLPHEIL--EMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE---------RE--------------------- 256 (293)
Q Consensus 209 ~v~~SAt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~--------------------- 256 (293)
++++|||+++... .++......+..+..... .+..+.+++.... ..
T Consensus 226 il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (1010)
T 2xgj_A 226 YVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGD 303 (1010)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcc
Confidence 9999999987532 344333445555544432 2223444433211 00
Q ss_pred ------------------------ccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhCC
Q 022724 257 ------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQFP 293 (293)
Q Consensus 257 ------------------------~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L~ 293 (293)
......+...+......++||||++++.|+.++..|.
T Consensus 304 ~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~ 364 (1010)
T 2xgj_A 304 DPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMS 364 (1010)
T ss_dssp -------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTT
T ss_pred cccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHH
Confidence 1122234444444455699999999999999998763
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=3.2e-30 Score=262.13 Aligned_cols=247 Identities=15% Similarity=0.190 Sum_probs=180.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhhc-CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~-~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
+.+...+++...+|..|+|+|.++++.+.. ++|++++||||||||++|.+|+++.+...+ +.++||++|+++|+.|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHH
Confidence 455677777778899999999999999875 578999999999999999999999987654 358999999999999999
Q ss_pred HHHHH-hhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC--CCCCCccEEEecchhhhhccccHHH
Q 022724 119 KVILA-IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQ 195 (293)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~--~~~~~l~~iViDE~h~~~~~~~~~~ 195 (293)
+.+++ +....|+++..++|+...+.. ...+++|+|+||+++..++++.. ..+++++++|+||+|.+.+. .+..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPV 1065 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCcc
Confidence 99975 566789999999988754432 22347999999999988877632 33688999999999998764 4554
Q ss_pred HHHHHh-------hCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHH------HH
Q 022724 196 IYDVYR-------YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF------DT 262 (293)
Q Consensus 196 ~~~i~~-------~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~------~~ 262 (293)
+..++. .+++..|+|++|||+++. .++..|+..++..+.....+..+..+...+...+...... ..
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~ 1144 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcch
Confidence 444433 456789999999999874 6666666544333332223334444555544444332111 11
Q ss_pred HHHHHh-hCCCCcEEEEcccchhHHHHHhhC
Q 022724 263 LCDLYD-TLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 263 l~~l~~-~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
+...+. ...++++||||+|++.|+.++..|
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L 1175 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDI 1175 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHH
Confidence 222333 345679999999999999988653
No 44
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=1.5e-29 Score=234.51 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=139.4
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINIQA 132 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (293)
.|+|+|.++++.+++|+++++++|||+|||++|++|+++.+...+. ++++||++|+++|+.|+.+.++++....++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5999999999999999999999999999999999999998876542 56899999999999999999999988889999
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEecchhhhhccc-cHHHHHHHHhhC-----CC
Q 022724 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYL-----PP 205 (293)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~-~~~~l~~iViDE~h~~~~~~-~~~~~~~i~~~l-----~~ 205 (293)
..++|+.....+...+..+++|+|+||+++...+..+.+ .+.++++|||||||++.+.+ +...+...+... .+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999877766666666789999999999999988766 78899999999999997664 333333333332 24
Q ss_pred CccEEEEEeecCh
Q 022724 206 DLQVVLISATLPH 218 (293)
Q Consensus 206 ~~q~v~~SAt~~~ 218 (293)
..|++++|||++.
T Consensus 164 ~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 164 LPQVVGLTASVGV 176 (555)
T ss_dssp CCEEEEEESCCCC
T ss_pred CCeEEEEecCccc
Confidence 5799999999954
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=2.8e-30 Score=262.54 Aligned_cols=246 Identities=15% Similarity=0.238 Sum_probs=178.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhhh-cCCcEEEEcCCCChhHHHHHHHHHhhhccC--------CCceeEEEEcCC
Q 022724 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTS--------SREVQALILSPT 110 (293)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~-~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~--------~~~~~~lil~P~ 110 (293)
|+++....+ .||++++++|++++|.++ +++|++++||||+|||++|.+++++.+... ..+.++||++|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 444444333 279999999999999876 578999999999999999999999988642 245689999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC--CCCCccEEEecchhhhh
Q 022724 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLLVLDESDEML 188 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~--~~~~l~~iViDE~h~~~ 188 (293)
++|+.|+.+.+++.....|+++..++|+.+.... ...+++|+|+|||++..++++... .++++++|||||+|++.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 9999999999998888899999999998765432 124579999999999777765432 36889999999999886
Q ss_pred ccccHHHHHHHHh-------hCCCCccEEEEEeecChhHHHHHHhcCCCCE-EEEecCCcccCCCceEEEEEecCccc--
Q 022724 189 SRGFKDQIYDVYR-------YLPPDLQVVLISATLPHEILEMTTKFMTDPV-KILVKRDELTLEGIKQFFVAVEREEW-- 258 (293)
Q Consensus 189 ~~~~~~~~~~i~~-------~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~-- 258 (293)
+ .++..++.++. .+++..|+|++|||+|+. .+++.++..++. .+.....+..+-.+.+.++.......
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~ 298 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK 298 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhh
Confidence 5 46666655544 346789999999999863 566665544321 12222223344456666555544331
Q ss_pred HHHHH----HHHHhh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 259 KFDTL----CDLYDT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 259 k~~~l----~~l~~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
....+ ...+.+ ..++++||||+|++.|+.+++.|
T Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l 337 (1724)
T 4f92_B 299 RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAI 337 (1724)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHH
Confidence 12222 222222 34569999999999999988754
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=1e-29 Score=245.14 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=135.9
Q ss_pred HCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
.+|+..|+|+|.++++.+++|+++++++|||+|||++|++|++..+...+. ++++||++|+++|+.|+.+.++++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 457889999999999999999999999999999999999999998876542 568999999999999999999999888
Q ss_pred CCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEecchhhhhcccc-HHHHHHHHhh---
Q 022724 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGF-KDQIYDVYRY--- 202 (293)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~-~~~~l~~iViDE~h~~~~~~~-~~~~~~i~~~--- 202 (293)
.++++..++|+.....+...+..+++|+|+||+++.+.+..+.+ .+.++++|||||||++.+.+. ...+..+...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 89999999999877776667777899999999999999988766 788999999999999876543 3333233332
Q ss_pred -CCCCccEEEEEeecC
Q 022724 203 -LPPDLQVVLISATLP 217 (293)
Q Consensus 203 -l~~~~q~v~~SAt~~ 217 (293)
..+..|++++|||++
T Consensus 403 ~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 403 SASQLPQILGLTASVG 418 (797)
T ss_dssp TCCCCCEEEEEESCCC
T ss_pred cCCCCCeEEEEcCCcc
Confidence 145689999999995
No 47
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=1.7e-29 Score=246.68 Aligned_cols=158 Identities=20% Similarity=0.284 Sum_probs=137.9
Q ss_pred HCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.++|. |+++|.++++.+.+|+++++++|||+|||++|++++...+.. +.+++|++|+++|+.|+++.++++.. +
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 34565 899999999999999999999999999999999998876543 56899999999999999999987643 5
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccE
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~ 209 (293)
+++..++|+.+.. ...+|+|+||++|.+++......+.++++|||||+|++.+++++..+..++..+++..|+
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 7788888887543 347999999999999998887778999999999999999999998999999999999999
Q ss_pred EEEEeecChhH
Q 022724 210 VLISATLPHEI 220 (293)
Q Consensus 210 v~~SAt~~~~~ 220 (293)
|++|||+++..
T Consensus 182 IlLSAT~~n~~ 192 (997)
T 4a4z_A 182 ILLSATVPNTY 192 (997)
T ss_dssp EEEECCCTTHH
T ss_pred EEEcCCCCChH
Confidence 99999998653
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=1.8e-28 Score=239.28 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=134.4
Q ss_pred HCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
-.|+..|+++|.++++.+++|+++++.+|||+|||++|++|++..+...+. +.++||++|+++|+.|+.+.++++...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 346788999999999999999999999999999999999999998876532 568999999999999999999999888
Q ss_pred CCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCC-CCCCccEEEecchhhhhccc-cHHHHHHHHhh---
Q 022724 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVYRY--- 202 (293)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~-~~~~l~~iViDE~h~~~~~~-~~~~~~~i~~~--- 202 (293)
.++++..++|+.+...+...+..+++|+|+||+++.+.+..+.+ .+.++++|||||||++...+ +...+..+...
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 89999999999876665555556789999999999999988766 78899999999999987653 33333333332
Q ss_pred -CCCCccEEEEEeecC
Q 022724 203 -LPPDLQVVLISATLP 217 (293)
Q Consensus 203 -l~~~~q~v~~SAt~~ 217 (293)
..+..|++++|||++
T Consensus 403 ~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 403 SASQLPQILGLTASVG 418 (936)
T ss_dssp TCSCCCEEEEEESCCC
T ss_pred cCCCcCeEEEecCCcc
Confidence 145689999999995
No 49
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=2.4e-27 Score=215.70 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=136.7
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
.|+|+|.++++.+.++ ++++.+|||+|||++++.++...+.. .+.++||++|+++|+.|+.+.++++....+.++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 5999999999999998 99999999999999999999887762 35689999999999999999999887545568888
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
++|+......... ..+++|+|+||+.+...+..+.+.+.++++||+||+|++.+......+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 8888766544333 335799999999999988888788899999999999999765444445555555567889999999
Q ss_pred ecChh---HHHHHHhc
Q 022724 215 TLPHE---ILEMTTKF 227 (293)
Q Consensus 215 t~~~~---~~~~~~~~ 227 (293)
|+.+. +..+...+
T Consensus 165 Tp~~~~~~~~~l~~~l 180 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNL 180 (494)
T ss_dssp CSCSSHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHhc
Confidence 99743 34444443
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=9.4e-28 Score=225.18 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=135.6
Q ss_pred HCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.+|| .|+++|..++|.+.+|+ +..++||+|||++|.+|++..... +..++||+||++||.|..+.+..+...+|
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4799 89999999999999999 999999999999999999854332 45799999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEecchhhhh-ccc----------
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SRG---------- 191 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~------~~~~~~l~~iViDE~h~~~-~~~---------- 191 (293)
+++..++||.+...+.. ..+++|+|+||++| .++++.+ ...++.+.++|+||||.|+ +.+
T Consensus 153 l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 99999999987654333 34689999999999 6666543 3567899999999999997 553
Q ss_pred -----cHHHHHHHHhhCC---------CCccEE-----------------EEEeecCh
Q 022724 192 -----FKDQIYDVYRYLP---------PDLQVV-----------------LISATLPH 218 (293)
Q Consensus 192 -----~~~~~~~i~~~l~---------~~~q~v-----------------~~SAt~~~ 218 (293)
+...+..+++.++ +..|+. ++|||.+.
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 6678889999986 367777 88999764
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=8.9e-28 Score=224.86 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=114.1
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
+|. .|+++|..+++.+.+|+ +..++||+|||++|++|++..... +.+++|++||++||.|..+.+..+...+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 564 79999999999999998 999999999999999999865433 468999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCCCccEEEecchhhhh-ccc-----------
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEML-SRG----------- 191 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~~------~~~~~l~~iViDE~h~~~-~~~----------- 191 (293)
++..++||.+... +....+++|+||||++| .++++.+. ..++++.++|+||+|.|+ +.+
T Consensus 145 ~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 9999999987543 33444689999999999 77777542 567999999999999998 433
Q ss_pred ----cHHHHHHHHhhCCC
Q 022724 192 ----FKDQIYDVYRYLPP 205 (293)
Q Consensus 192 ----~~~~~~~i~~~l~~ 205 (293)
+...+..++..+++
T Consensus 223 ~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp ------------------
T ss_pred cchhHHHHHHHHHHhchh
Confidence 45667777777753
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=7.9e-26 Score=223.94 Aligned_cols=235 Identities=16% Similarity=0.161 Sum_probs=169.7
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHHhhhc----CC--cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 38 MGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIK----GR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 38 ~~l~~~i~~~l~-~~~~~~~~~~Q~~~~~~i~~----~~--~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
++.+....+.+. .++|. |+|+|.++++.+.+ |+ ++++++|||+|||++|+.+++..+.. +.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 455666666664 46776 79999999999875 65 99999999999999999888876654 4699999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhh
Q 022724 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~ 186 (293)
++|+.|+++.+++.....++++..+++..+..+.. ..+.. .++|+|+||+.+. ....+.++++|||||+|+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 99999999999988877888888888776554432 33333 5899999997553 346688999999999999
Q ss_pred hhccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHH
Q 022724 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (293)
Q Consensus 187 ~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 266 (293)
+. ......+..+....++++||||+.+....+....+.++..+.... .....+..++.... +......+
T Consensus 737 ~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~--~~r~~i~~~~~~~~----~~~i~~~i 805 (1151)
T 2eyq_A 737 FG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP--ARRLAVKTFVREYD----SMVVREAI 805 (1151)
T ss_dssp SC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC--CBCBCEEEEEEECC----HHHHHHHH
T ss_pred cC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC--CCccccEEEEecCC----HHHHHHHH
Confidence 63 233444555566789999999998777766666555544332222 12223444444322 22222233
Q ss_pred Hhh-CCCCcEEEEcccchhHHHHHhhC
Q 022724 267 YDT-LTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 267 ~~~-~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
++. ..+++++||||++++++.+++.|
T Consensus 806 l~~l~~g~qvlvf~~~v~~~~~l~~~L 832 (1151)
T 2eyq_A 806 LREILRGGQVYYLYNDVENIQKAAERL 832 (1151)
T ss_dssp HHHHTTTCEEEEECCCSSCHHHHHHHH
T ss_pred HHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 322 34679999999999999998765
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.94 E-value=6.5e-26 Score=212.71 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=136.5
Q ss_pred HCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC
Q 022724 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (293)
.+|+ .|+++|..+++.+.+|+ +..++||+|||++|.+|++..... +.+++|++||++||.|..+.+..+...+|
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3688 89999999999999998 999999999999999999754433 45799999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcC------CCCCCCccEEEecchhhhh-cc-----------
Q 022724 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SR----------- 190 (293)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~------~~~~~~l~~iViDE~h~~~-~~----------- 190 (293)
+++..++|+.+..... ...+++|+++||++| .++|+.+ ...++.+.++||||+|.|+ +.
T Consensus 181 Lsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 181 LQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp CCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred CeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 9999999998754333 333589999999999 6777654 3667899999999999998 42
Q ss_pred ----ccHHHHHHHHhhCC---------CCccEE-----------------EEEeecCh
Q 022724 191 ----GFKDQIYDVYRYLP---------PDLQVV-----------------LISATLPH 218 (293)
Q Consensus 191 ----~~~~~~~~i~~~l~---------~~~q~v-----------------~~SAt~~~ 218 (293)
++...+..++..++ +..|+. ++|||.++
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 46788999999997 678888 88999764
No 54
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.94 E-value=5.5e-27 Score=191.54 Aligned_cols=164 Identities=14% Similarity=0.157 Sum_probs=120.5
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccC---CCceeEEEEcCCHHHHHH-HHHHHHHhhc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQ-TEKVILAIGD 126 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~---~~~~~~lil~P~~~l~~q-~~~~~~~~~~ 126 (293)
.....|+++|.++++.+.+++++++.+|||+|||+++++++...+... ..+.+++|++|+++|+.| +.+.++.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 345579999999999999999999999999999999999998776432 235689999999999999 7788887765
Q ss_pred cCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCC------CCCCCccEEEecchhhhhccccHHHH-HHH
Q 022724 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT------LRTRAIKLLVLDESDEMLSRGFKDQI-YDV 199 (293)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~------~~~~~l~~iViDE~h~~~~~~~~~~~-~~i 199 (293)
. ++++..++|+.........+..+++|+|+||+.+.+.+.... ..+.++++|||||+|++.+.++...+ ..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 678888888766555544444568999999999999887643 55788999999999999876544443 333
Q ss_pred HhhC-------------CCCccEEEEEee
Q 022724 200 YRYL-------------PPDLQVVLISAT 215 (293)
Q Consensus 200 ~~~l-------------~~~~q~v~~SAt 215 (293)
+... .+..+++++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2221 157899999998
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=1.7e-26 Score=219.58 Aligned_cols=231 Identities=17% Similarity=0.190 Sum_probs=157.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhhhcC------CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHH
Q 022724 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (293)
Q Consensus 42 ~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~------~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~ 115 (293)
+.+.+.+..++| .|+++|+++++.+.++ +++++++|||||||++|++|++..+.. +.+++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 445555678899 7999999999998865 699999999999999999999988765 468999999999999
Q ss_pred HHHHHHHHhhccCCceEEEEECCcchHHHH---HHHhc-CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccc
Q 022724 116 QTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (293)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~ 191 (293)
|+++.++++....++++..++|+.+..+.. ..+.+ .++|+|+||+.+.+ ...+.+++++||||+|.+....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 999999999888899999999998765543 33333 48999999987754 4568899999999999973221
Q ss_pred cHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHh-h-
Q 022724 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T- 269 (293)
Q Consensus 192 ~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~-~- 269 (293)
...+.......++++||||+.+....+.. ..+.....+.........+...+. ... +...+...+. .
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~---~~~-~~~~l~~~i~~~l 575 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQTMLV---PMD-RVNEVYEFVRQEV 575 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEECCC---CSS-THHHHHHHHHHHT
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEEEEe---ccc-hHHHHHHHHHHHH
Confidence 11122223568999999998766554433 222211122211111122332222 122 2333333333 2
Q ss_pred CCCCcEEEEcccchh--------HHHHHhhC
Q 022724 270 LTITQAVIFCNTKRK--------VLLLVLQF 292 (293)
Q Consensus 270 ~~~~~~iIF~~s~~~--------a~~l~~~L 292 (293)
..+++++|||+++++ ++.+++.|
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L 606 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYL 606 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSG
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHH
Confidence 345699999997754 55555544
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.94 E-value=1.5e-27 Score=227.33 Aligned_cols=163 Identities=13% Similarity=0.177 Sum_probs=127.3
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC---CceeEEEEcCCHHHHHHH-HHHHHHhhccCCc
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQT-EKVILAIGDFINI 130 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~---~~~~~lil~P~~~l~~q~-~~~~~~~~~~~~~ 130 (293)
.|+++|.++++.+++|+++++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|+ .+.++++... ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 599999999999999999999999999999999999998775431 235899999999999999 9999998765 57
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHH------hcCCCCCCCccEEEecchhhhhccc-cHHHHHHHHhhC
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI------KRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYL 203 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l------~~~~~~~~~l~~iViDE~h~~~~~~-~~~~~~~i~~~l 203 (293)
++..++|+.........+..+++|+|+||++|.+.+ ....+.+.++++|||||||++...+ +...+..++...
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 888999987766655666677899999999999988 4455678899999999999985543 333333222221
Q ss_pred -------------CCCccEEEEEeecCh
Q 022724 204 -------------PPDLQVVLISATLPH 218 (293)
Q Consensus 204 -------------~~~~q~v~~SAt~~~ 218 (293)
.+..+++++|||++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hcccccccccccCCCCCEEEEecccccc
Confidence 156799999999986
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.93 E-value=2.7e-26 Score=211.02 Aligned_cols=155 Identities=21% Similarity=0.190 Sum_probs=128.8
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEE
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (293)
..|+++|.++++.+.++++.++++|||+|||++|+.++...+... +.+++|++|+++|+.|+.+.++++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 379999999999999999999999999999999999988877543 348999999999999999999988766667888
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.++++.+...+ .....+|+|+||+.+.. .....+.++++|||||+|.+.. ..+..+++.+.+..+++++|
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEE
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEE
Confidence 88888765543 34567999999996543 3334567899999999999854 45667778887888999999
Q ss_pred eecChhH
Q 022724 214 ATLPHEI 220 (293)
Q Consensus 214 At~~~~~ 220 (293)
||+++..
T Consensus 260 ATp~~~~ 266 (510)
T 2oca_A 260 GSLRDGK 266 (510)
T ss_dssp SCGGGCS
T ss_pred eCCCCCc
Confidence 9997653
No 58
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=4.3e-25 Score=201.16 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=112.2
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce-EE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (293)
.|+|+|.++++.+.+++++++++|||+|||++|+.++... +.++||++|+++|+.|+.+.++++ +++ +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 5899999999999999999999999999999999888764 458999999999999999988773 677 77
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.++|+... ..+|+|+||+.+...+..- ..++++|||||+|.+.+..+.. +...+ +..+++++|
T Consensus 163 ~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (472)
T ss_dssp EBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEE
T ss_pred EECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEe
Confidence 77776542 4689999999988765421 2458999999999998776654 44444 467899999
Q ss_pred eecC
Q 022724 214 ATLP 217 (293)
Q Consensus 214 At~~ 217 (293)
||+.
T Consensus 226 ATp~ 229 (472)
T 2fwr_A 226 ATFE 229 (472)
T ss_dssp SCCC
T ss_pred cCcc
Confidence 9996
No 59
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.92 E-value=6.3e-24 Score=202.83 Aligned_cols=246 Identities=15% Similarity=0.177 Sum_probs=165.0
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhh-cCCcEEEEcCCCChhHHHHHHHHH--hhhccCCCceeEEE
Q 022724 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVC--QTVDTSSREVQALI 106 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~-~~~~~li~~~Tg~GKT~~~~~~~~--~~l~~~~~~~~~li 106 (293)
.++.+|+++++++.+.+.+.+.+ ..|++.|+++++.++ .+++++++||||+|||+ ++|++ ........+.++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEe
Confidence 34678999999999999999887 789999999999876 56789999999999998 34444 21111222567999
Q ss_pred EcCCHHHHHHHHHHHHHhh-ccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchh
Q 022724 107 LSPTRELATQTEKVILAIG-DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (293)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h 185 (293)
++|+++|+.|+.+.+.... ...+..+........ ....+.+|+++||+++.+.+... ..+.++++||+||+|
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah 218 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAH 218 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGG
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcc
Confidence 9999999999988775432 222322322111111 11235689999999999876654 458899999999999
Q ss_pred h-hhccc-cHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHH--
Q 022724 186 E-MLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD-- 261 (293)
Q Consensus 186 ~-~~~~~-~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~-- 261 (293)
. .++.. ....+..+.... +..|+++||||++.. .+. .++.+...+.+... ...+.+++......+....
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGR---TYPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCC---CCCEEEECCSSCCSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HHH-HHhcCCCcccccCc---ccceEEEEecCCchhHHHHHH
Confidence 6 44432 233444555444 578999999999643 333 34444444444322 2345666554444432222
Q ss_pred -HHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 262 -TLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 262 -~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+..+.....++++||||+++++++.+++.|
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L 323 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKI 323 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHH
Confidence 2333344456789999999999999998765
No 60
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=3e-24 Score=177.95 Aligned_cols=166 Identities=19% Similarity=0.243 Sum_probs=124.7
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhh-ccCCce
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIG-DFINIQ 131 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~-~~~~~~ 131 (293)
.++++|.++++.+.+|++++++||||||||.++.++++........ +.++++++|+++++.|+.+.+.... ...+..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 4789999999999999999999999999999998888887654433 4589999999999999998887543 233433
Q ss_pred EEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh-hccccH-HHHHHHHhhCCCCccE
Q 022724 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGFK-DQIYDVYRYLPPDLQV 209 (293)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~-~~~~~~-~~~~~i~~~l~~~~q~ 209 (293)
+........ .....+++|+|+||+++.+.+.. .++++++||+||+|.+ .+.++. ..+..+.... ++.|+
T Consensus 141 ~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~ 211 (235)
T 3llm_A 141 CGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRI 211 (235)
T ss_dssp EEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEE
T ss_pred EEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeE
Confidence 333221111 00113478999999999998876 3889999999999985 555555 4566666665 47899
Q ss_pred EEEEeecChhHHHHHHhcCCCC
Q 022724 210 VLISATLPHEILEMTTKFMTDP 231 (293)
Q Consensus 210 v~~SAt~~~~~~~~~~~~~~~~ 231 (293)
+++|||++... +.+.+...|
T Consensus 212 il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 212 VLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp EEEECSSCCHH--HHHHTTSCC
T ss_pred EEEecCCCHHH--HHHHcCCCC
Confidence 99999999775 444444444
No 61
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.92 E-value=1.3e-25 Score=203.19 Aligned_cols=206 Identities=15% Similarity=0.112 Sum_probs=137.6
Q ss_pred CCCCCcHHHHHHHHhhhcCCcE-EEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 52 GFEKPSAIQQRAVMPIIKGRDV-IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~~~~~~-li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
|+.+|+|+|+ ++|.+++++++ ++++|||||||++|++|++..+... +++++|++|+++|+.|+.+.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6789999985 79999988876 9999999999999999998876553 5689999999999999999774 22
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHh-hCCCCccE
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR-YLPPDLQV 209 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~-~l~~~~q~ 209 (293)
.+......... ....+..|.++|++.+.+.+.+. ..+.++++|||||+|++ +..+......+.. ...+..|+
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 33221111110 11234478899999998876554 45789999999999987 3333332322222 23457999
Q ss_pred EEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHH
Q 022724 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLV 289 (293)
Q Consensus 210 v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~ 289 (293)
++||||+++....+ +..++..+..... .+. . ....+...+... .+++||||+|+++|+.++
T Consensus 145 i~~SAT~~~~~~~~---~~~~~~~~~~~~~--~p~--~-----------~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 145 IFMTATPPGSTDPF---PQSNSPIEDIERE--IPE--R-----------SWNTGFDWITDY-QGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp EEECSSCTTCCCSS---CCCSSCEEEEECC--CCS--S-----------CCSSSCHHHHHC-CSCEEEECSSHHHHHHHH
T ss_pred EEEccCCCccchhh---hcCCCceEecCcc--CCc--h-----------hhHHHHHHHHhC-CCCEEEEcCCHHHHHHHH
Confidence 99999998754332 2233333333210 000 0 000111223333 469999999999999999
Q ss_pred hhC
Q 022724 290 LQF 292 (293)
Q Consensus 290 ~~L 292 (293)
+.|
T Consensus 206 ~~L 208 (451)
T 2jlq_A 206 NCL 208 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 62
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.92 E-value=2.7e-26 Score=214.14 Aligned_cols=220 Identities=15% Similarity=0.102 Sum_probs=147.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 022724 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (293)
Q Consensus 38 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~ 117 (293)
+++++.+.+++... ...|+|+|+.+++.+.+|+++++++|||||||++|++|+++.+... +.++||++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 45666666555543 4788999888999999999999999999999999999999887653 56899999999999999
Q ss_pred HHHHHHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHH
Q 022724 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (293)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~ 197 (293)
.+.++. ..+. +.+.. .. ..-..+..+.+.|.+.+.+.+... ..+.++++||+||||++ +.++...+.
T Consensus 232 ~~~l~~------~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRG------LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTT------SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcC------Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 987752 2232 11111 00 001122356777888887755544 45889999999999998 566666777
Q ss_pred HHHhhCC-CCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEE
Q 022724 198 DVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV 276 (293)
Q Consensus 198 ~i~~~l~-~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~i 276 (293)
.+...++ +..|+++||||+++.+..+.. .++..+.+.... +... ...+...+.+. .+++|
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-------------~~~~--~~~ll~~l~~~-~~~~L 359 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-------------PERS--WNTGFDWITDY-QGKTV 359 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-------------CSSC--CSSSCHHHHHC-CSCEE
T ss_pred HHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-------------CHHH--HHHHHHHHHhC-CCCEE
Confidence 7776664 679999999999877443222 123333322110 1111 11112222232 56999
Q ss_pred EEcccchhHHHHHhhC
Q 022724 277 IFCNTKRKVLLLVLQF 292 (293)
Q Consensus 277 IF~~s~~~a~~l~~~L 292 (293)
|||+|+++|+.+++.|
T Consensus 360 VF~~s~~~a~~l~~~L 375 (618)
T 2whx_A 360 WFVPSIKAGNDIANCL 375 (618)
T ss_dssp EECSSHHHHHHHHHHH
T ss_pred EEECChhHHHHHHHHH
Confidence 9999999999999875
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.91 E-value=3.4e-25 Score=205.79 Aligned_cols=197 Identities=17% Similarity=0.180 Sum_probs=139.9
Q ss_pred CcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE
Q 022724 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (293)
+++.|.++++.+.++++++++||||+|||.+|.+++++. +.+++|++|+++|+.|+.+.+.+.. +..+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~ 288 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIR 288 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEE
Confidence 455666666667788999999999999999999998863 4589999999999999998776543 3445556
Q ss_pred ECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCcc--EEEEE
Q 022724 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ--VVLIS 213 (293)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q--~v~~S 213 (293)
.|+.. ...+.+|+|+||++| +....+.++++++|||||+|++ +.++...+..+++.++...+ ++++|
T Consensus 289 vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~S 357 (666)
T 3o8b_A 289 TGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLAT 357 (666)
T ss_dssp CSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred ECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEEC
Confidence 66643 245689999999997 4567778899999999999764 56777788888998886666 78889
Q ss_pred eecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 214 At~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
||+++.+. ...+....+.... .....+ ..... . ++...++++|||||++++|+.+++.|
T Consensus 358 AT~~~~i~------~~~p~i~~v~~~~---~~~i~~---~~~~~-~-------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 358 ATPPGSVT------VPHPNIEEVALSN---TGEIPF---YGKAI-P-------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp SSCTTCCC------CCCTTEEEEECBS---CSSEEE---TTEEE-C-------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCCcccc------cCCcceEEEeecc---cchhHH---HHhhh-h-------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 99987421 1111111111000 000111 01000 0 22345679999999999999999875
No 64
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=4.7e-24 Score=181.55 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=124.4
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
.|+++|.++++.+.++++.++++|||+|||++++.++...+... +.+++|++|+++|+.|+.+.++++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 79999999999999888899999999999999988887766542 3489999999999999999999987766677777
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
+.++..... ....+.+|+|+||+.+.+. ....+.+++++|+||+|++.+ ..+..+++.+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 777764432 1224579999999876543 223467889999999999863 367778888877899999999
Q ss_pred ecChhH
Q 022724 215 TLPHEI 220 (293)
Q Consensus 215 t~~~~~ 220 (293)
|+++..
T Consensus 261 Tp~~~~ 266 (282)
T 1rif_A 261 SLRDGK 266 (282)
T ss_dssp SCCTTS
T ss_pred CCCCcc
Confidence 997653
No 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.89 E-value=2.9e-25 Score=200.18 Aligned_cols=185 Identities=14% Similarity=0.145 Sum_probs=117.6
Q ss_pred hhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHH
Q 022724 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (293)
Q Consensus 66 ~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (293)
.+.+|+|+++++|||||||++|++|++..+... +++++|++||++|+.|+++.++.+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~------ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF------ 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc------
Confidence 467899999999999999999999999877654 568999999999999999987633 222111110
Q ss_pred HHHhcCCcEEEeChHHHHHHHhc--------CCCCCCCccEEEecchhhhhccccHHHHHHHHhhC-CCCccEEEEEeec
Q 022724 146 RKLEHGVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATL 216 (293)
Q Consensus 146 ~~~~~~~~ilV~Tp~~l~~~l~~--------~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l-~~~~q~v~~SAt~ 216 (293)
-.|+||+++..++.. ....+.+++++|+||+|.+ +.++...+..+...+ +...|+++||||+
T Consensus 70 --------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 140 (440)
T 1yks_A 70 --------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATP 140 (440)
T ss_dssp --------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred --------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCC
Confidence 035666555432221 2244789999999999998 333332232222222 3579999999999
Q ss_pred ChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 217 PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
++.+..+.... .+. ......++... +...+..+. +. ++++||||++++.|+.+++.|
T Consensus 141 ~~~~~~~~~~~--~~~--------------~~~~~~~~~~~-~~~~~~~l~-~~-~~~~lVF~~s~~~a~~l~~~L 197 (440)
T 1yks_A 141 PGTSDEFPHSN--GEI--------------EDVQTDIPSEP-WNTGHDWIL-AD-KRPTAWFLPSIRAANVMAASL 197 (440)
T ss_dssp TTCCCSSCCCS--SCE--------------EEEECCCCSSC-CSSSCHHHH-HC-CSCEEEECSCHHHHHHHHHHH
T ss_pred CchhhhhhhcC--CCe--------------eEeeeccChHH-HHHHHHHHH-hc-CCCEEEEeCCHHHHHHHHHHH
Confidence 87644332210 111 11111111111 111122222 22 579999999999999999875
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.89 E-value=4.3e-23 Score=185.54 Aligned_cols=190 Identities=13% Similarity=0.116 Sum_probs=120.8
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
+|+++++++|||||||++|++|+++.+... +.+++|++|+++|+.|+.+.++ ++.+....++... .-
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cC
Confidence 478999999999999999999999666543 5689999999999999998664 3444443333211 11
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhC-CCCccEEEEEeecChhHHHHHHhc
Q 022724 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKF 227 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l-~~~~q~v~~SAt~~~~~~~~~~~~ 227 (293)
..+..+.+.|.+.+.+.+.. ...+.++++|||||+|.+ +..+......+.... +...|+++||||+++.+..+...
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~- 144 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS- 144 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC-
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC-
Confidence 12345677788888776655 456889999999999997 333333333333332 46799999999998753221110
Q ss_pred CCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 228 MTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..| +.......+.. +...+..++... ++++||||+++++|+.+++.|
T Consensus 145 -~~~--------------i~~~~~~~~~~--~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L 191 (431)
T 2v6i_A 145 -NSP--------------IIDEETRIPDK--AWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCL 191 (431)
T ss_dssp -SSC--------------CEEEECCCCSS--CCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHH
T ss_pred -CCc--------------eeeccccCCHH--HHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHH
Confidence 011 11100001111 111222334333 569999999999999999875
No 67
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.89 E-value=2.7e-24 Score=202.00 Aligned_cols=211 Identities=16% Similarity=0.168 Sum_probs=130.5
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHhhh------cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 47 GIYQYGFE-----KPSAIQQ-----RAVMPII------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 47 ~l~~~~~~-----~~~~~Q~-----~~~~~i~------~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
++...||. .|+++|+ +++|.++ +|+|+++++|||||||++|++|++..+... +.+++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 34455666 8999999 9999888 899999999999999999999999887653 5689999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhc
Q 022724 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
++|+.|+.+.++.+. +. ...+. ..... .+.-+-..+.+.+.+.+... ..++++++|||||+|.+ +
T Consensus 280 r~La~Q~~~~l~~~~----i~--~~~~~------l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~ 345 (673)
T 2wv9_A 280 RVVAAEMAEALRGLP----VR--YLTPA------VQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-D 345 (673)
T ss_dssp HHHHHHHHHHTTTSC----CE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-C
T ss_pred HHHHHHHHHHHhcCC----ee--eeccc------ccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-C
Confidence 999999999876442 21 10000 00000 11123333444444433332 56889999999999998 2
Q ss_pred cccHHHHHHHHhhC-CCCccEEEEEeecChhHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHh
Q 022724 190 RGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (293)
Q Consensus 190 ~~~~~~~~~i~~~l-~~~~q~v~~SAt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 268 (293)
..+...+..+...+ +...|+++||||+++.+..+... ..+.. .......... ....+..+.+
T Consensus 346 ~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~--------------~v~~~~~~~~-~~~~l~~l~~ 408 (673)
T 2wv9_A 346 PASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH--------------DVSSEIPDRA-WSSGFEWITD 408 (673)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE--------------EEECCCCSSC-CSSCCHHHHS
T ss_pred ccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE--------------EEeeecCHHH-HHHHHHHHHh
Confidence 22222333333333 25789999999998764322211 01111 1110011111 1111222222
Q ss_pred hCCCCcEEEEcccchhHHHHHhhC
Q 022724 269 TLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 269 ~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.++++||||+++++|+.+++.|
T Consensus 409 --~~~~~lVF~~s~~~~e~la~~L 430 (673)
T 2wv9_A 409 --YAGKTVWFVASVKMSNEIAQCL 430 (673)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHH
T ss_pred --CCCCEEEEECCHHHHHHHHHHH
Confidence 4679999999999999999875
No 68
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=2.5e-21 Score=181.46 Aligned_cols=130 Identities=19% Similarity=0.239 Sum_probs=112.5
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
+|+ .|+++|..+++.+.+|+ +..+.||+|||++|.+|++..... +.+++|++||++||.|.++.+..+...+|+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 788 89999999999999998 999999999999999999644433 457999999999999999999999999999
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHH-HHHHhcCC------CCCC---CccEEEecchhhhh
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTR---AIKLLVLDESDEML 188 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~l~~~~------~~~~---~l~~iViDE~h~~~ 188 (293)
++..++|+.+... +....+++|+|+||+.+ .++++.+. ..++ ++.++||||+|.++
T Consensus 150 sv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999987443 33334689999999999 78887653 4567 89999999999986
No 69
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.88 E-value=4.3e-23 Score=192.94 Aligned_cols=150 Identities=20% Similarity=0.270 Sum_probs=90.8
Q ss_pred CCcHHHHHHHHhhhc----C-CcEEEEcCCCChhHHHHHHHHHhhhccCC-------CceeEEEEcCCHHHHHHHH-HHH
Q 022724 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSS-------REVQALILSPTRELATQTE-KVI 121 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~----~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-------~~~~~lil~P~~~l~~q~~-~~~ 121 (293)
.|+++|.++++.+.. | +++++++|||+|||++++..+ ..+.... .++++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998875 4 679999999999999965544 4443332 5679999999999999998 666
Q ss_pred HHhhccCCceEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhc----CCCCCCCccEEEecchhhhhccccHHHHH
Q 022724 122 LAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR----KTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (293)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~----~~~~~~~l~~iViDE~h~~~~~~~~~~~~ 197 (293)
+.+. ..+..+.++ ....+.+|+|+||+++...... ..+...++++||+||||++.... ...+.
T Consensus 257 ~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 5443 233333322 1234579999999999886542 33556789999999999986532 23455
Q ss_pred HHHhhCCCCccEEEEEeecChh
Q 022724 198 DVYRYLPPDLQVVLISATLPHE 219 (293)
Q Consensus 198 ~i~~~l~~~~q~v~~SAt~~~~ 219 (293)
.++..++ ..+++++|||+...
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLRE 344 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCT
T ss_pred HHHHhCC-cceEEEeccccccc
Confidence 6666665 57899999998643
No 70
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.87 E-value=2e-22 Score=182.67 Aligned_cols=191 Identities=14% Similarity=0.170 Sum_probs=121.3
Q ss_pred HHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHH
Q 022724 64 VMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE 143 (293)
Q Consensus 64 ~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (293)
-..+.+++++++++|||||||++|++|++..+... ++++||++|+++|+.|+.+.++ +..+....+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-- 84 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR-- 84 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc--
Confidence 34466789999999999999999999999887653 5689999999999999999876 2222221111110
Q ss_pred HHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh-----hccccHHHHHHHHhhCCCCccEEEEEeecCh
Q 022724 144 DIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-----LSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (293)
Q Consensus 144 ~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~-----~~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~ 218 (293)
.-..+..+.+.|.+.+.+.+... ..++++++|||||+|.+ ...++..... ..+..|+++||||+++
T Consensus 85 ---~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 85 ---EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPG 155 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTT
T ss_pred ---CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCc
Confidence 01123357778888887755543 55889999999999983 3333322211 1357899999999987
Q ss_pred hHHHHHHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 219 EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+..+... ..|....... .+.. +...+..++... ++++||||+++++|+.+++.|
T Consensus 156 ~~~~~~~~--~~pi~~~~~~--------------~~~~--~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 156 TTDPFPDS--NAPIHDLQDE--------------IPDR--AWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp CCCSSCCC--SSCEEEEECC--------------CCSS--CCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHH
T ss_pred chhhhccC--CCCeEEeccc--------------CCcc--hhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHH
Confidence 64332211 1222221110 0000 001111223333 579999999999999999875
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.85 E-value=1.6e-21 Score=190.06 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=115.4
Q ss_pred CCcHHHHHHHHhhhc--------------CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHH
Q 022724 55 KPSAIQQRAVMPIIK--------------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~--------------~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~ 120 (293)
.|+|+|.++++.+.. +++.+++++||||||+++ ++++..+...+...++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998764 368999999999999997 55555555444446999999999999999999
Q ss_pred HHHhhccCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCC--CCCCCccEEEecchhhhhccccHHHHH
Q 022724 121 ILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQIY 197 (293)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~~--~~~~~l~~iViDE~h~~~~~~~~~~~~ 197 (293)
++.+... .+.++.+.......+. .+.+|+|+||+++...+.... ..+....+||+||||++... ....
T Consensus 350 f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~ 420 (1038)
T 2w00_A 350 YQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQK 420 (1038)
T ss_dssp HHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHH
T ss_pred HHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHH
Confidence 8887543 1223444444445553 467999999999998876532 23557899999999997532 3345
Q ss_pred HHHhhCCCCccEEEEEeecCh
Q 022724 198 DVYRYLPPDLQVVLISATLPH 218 (293)
Q Consensus 198 ~i~~~l~~~~q~v~~SAt~~~ 218 (293)
.+...++ +.++++||||+..
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCC
T ss_pred HHHHhCC-cccEEEEeCCccc
Confidence 5666665 5899999999864
No 72
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.85 E-value=1.6e-20 Score=155.53 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=109.2
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCce-EE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (293)
.|+++|.++++.+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++ ++. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 6899999999999999999999999999999988777653 357999999999999999988763 566 66
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.|+... ..+|+|+|++.+......- ..++++|||||+|++.+..+. .+...++ ..+++++|
T Consensus 163 ~~~g~~~~---------~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLT 225 (237)
T ss_dssp EESSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEE
T ss_pred EEeCCCCC---------cCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEe
Confidence 66666532 4689999999987755421 245899999999999766543 3445554 67899999
Q ss_pred eecChh
Q 022724 214 ATLPHE 219 (293)
Q Consensus 214 At~~~~ 219 (293)
||++..
T Consensus 226 ATp~r~ 231 (237)
T 2fz4_A 226 ATFERE 231 (237)
T ss_dssp ESCC--
T ss_pred cCCCCC
Confidence 998754
No 73
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.79 E-value=2.4e-18 Score=157.66 Aligned_cols=148 Identities=13% Similarity=0.138 Sum_probs=106.7
Q ss_pred CCcHHHHHHHHhh----hcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 55 KPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 55 ~~~~~Q~~~~~~i----~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|+|+|.++++.+ ..+++.++..+||+|||+.++..+. .+.......++||+|| ..|+.|+.+.++++.. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKENELTPSLVICP-LSVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT--TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC--Cc
Confidence 6999999999876 3578999999999999988765444 4433333458999999 5699999999998865 35
Q ss_pred eEEEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEE
Q 022724 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v 210 (293)
++..++|+... ....+.+|+|+|++.+..... +...++++||+||+|++.+.. ......+..++ ..+.+
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEE
Confidence 56666655421 112356899999998876433 334567999999999985443 22334444553 56789
Q ss_pred EEEeecC
Q 022724 211 LISATLP 217 (293)
Q Consensus 211 ~~SAt~~ 217 (293)
++|||+.
T Consensus 182 ~LTaTP~ 188 (500)
T 1z63_A 182 ALTGTPI 188 (500)
T ss_dssp EECSSCS
T ss_pred EEecCCC
Confidence 9999983
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.77 E-value=2.5e-19 Score=168.08 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=124.3
Q ss_pred HhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHH
Q 022724 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED 144 (293)
Q Consensus 65 ~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (293)
...++|++++++||||+|||.. ++..+... .+.+|++|+++|+.|+++.+++. ++++..+.|+.....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~----al~~l~~~---~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv- 217 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA---KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV- 217 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH----HHHHHHHS---SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC-
T ss_pred HHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc---CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe-
Confidence 3446889999999999999983 33333333 24599999999999999998775 667778887754310
Q ss_pred HHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC-CCccEEEEEeecChhHHHH
Q 022724 145 IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEM 223 (293)
Q Consensus 145 ~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~-~~~q~v~~SAt~~~~~~~~ 223 (293)
..-....+++++|++.+. ....++++||||+|++.+.+++..+..++..++ ...+++++|||. +.+..+
T Consensus 218 -~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l 287 (677)
T 3rc3_A 218 -QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMEL 287 (677)
T ss_dssp -STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHH
T ss_pred -cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHHHHH
Confidence 000112567777774332 246789999999999998889999998888887 678999999995 334444
Q ss_pred HHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 224 TTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.... .....+..... .... . . .... + ..+... ....+|||+++++++.+++.|
T Consensus 288 ~~~~-~~~~~v~~~~r---~~~l--~-~-~~~~------l-~~l~~~-~~g~iIf~~s~~~ie~la~~L 340 (677)
T 3rc3_A 288 MYTT-GEEVEVRDYKR---LTPI--S-V-LDHA------L-ESLDNL-RPGDCIVCFSKNDIYSVSRQI 340 (677)
T ss_dssp HHHH-TCCEEEEECCC---SSCE--E-E-CSSC------C-CSGGGC-CTTEEEECSSHHHHHHHHHHH
T ss_pred HHhc-CCceEEEEeee---cchH--H-H-HHHH------H-HHHHhc-CCCCEEEEcCHHHHHHHHHHH
Confidence 4443 23333322110 0010 0 0 0000 0 011122 245689999999999998865
No 75
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.76 E-value=1.8e-18 Score=169.28 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=106.6
Q ss_pred CCcHHHHHHHHhhhc--CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q 022724 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~--~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (293)
.|+|+|.+++..+.. +.+.+++.+||+|||+.++..+...+.... ..+++|+||+ .|+.|+.+.+.+.. ++++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 699999999998775 458999999999999998877766655443 3479999999 99999999886544 5566
Q ss_pred EEEECCcchHHHHH--HHhcCCcEEEeChHHHHHHHhc-CCCCCCCccEEEecchhhhhccccH--HHHHHHHhhCCCCc
Q 022724 133 HACVGGKSVGEDIR--KLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFK--DQIYDVYRYLPPDL 207 (293)
Q Consensus 133 ~~~~~~~~~~~~~~--~~~~~~~ilV~Tp~~l~~~l~~-~~~~~~~l~~iViDE~h~~~~~~~~--~~~~~i~~~l~~~~ 207 (293)
..+.++........ ......+|+|+|++.+...... ..+...++++|||||+|++...+.. .....+........
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 55554432221111 1112468999999877542111 1133457899999999999644321 11222222222456
Q ss_pred cEEEEEeecC
Q 022724 208 QVVLISATLP 217 (293)
Q Consensus 208 q~v~~SAt~~ 217 (293)
+++++|||+.
T Consensus 308 ~~L~LTATPi 317 (968)
T 3dmq_A 308 GVLLLTATPE 317 (968)
T ss_dssp SEEESCSSCS
T ss_pred cEEEEEcCCc
Confidence 7999999973
No 76
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.72 E-value=3e-17 Score=151.95 Aligned_cols=129 Identities=18% Similarity=0.057 Sum_probs=100.3
Q ss_pred CCcHHHHHHHHh----hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 55 KPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 55 ~~~~~Q~~~~~~----i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|+|.|.+++.. +..|+++++.+|||+|||++|++|++. .+++++|++||++|+.|+.+.+..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 599999997765 457899999999999999999999998 2568999999999999999999888777778
Q ss_pred eEEEEECCcch---------------------------------HHHH------------------HHHhcCCcEEEeCh
Q 022724 131 QAHACVGGKSV---------------------------------GEDI------------------RKLEHGVHVVSGTP 159 (293)
Q Consensus 131 ~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~ilV~Tp 159 (293)
++..+.|..+. .... +.....++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 88776653211 1111 22234679999999
Q ss_pred HHHHHHHhcCCCCC-CCccEEEecchhhhhc
Q 022724 160 GRVCDMIKRKTLRT-RAIKLLVLDESDEMLS 189 (293)
Q Consensus 160 ~~l~~~l~~~~~~~-~~l~~iViDE~h~~~~ 189 (293)
..+.....+..+.+ ....++||||||.+.+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99988543333323 4678899999999976
No 77
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.3e-15 Score=146.79 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=110.0
Q ss_pred CCcHHHHHHHHhhh----cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.++|+|.+++..+. .+++.++..+||.|||+.++..+...+........+||+|| ..++.|+.+.+.++.. ++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 58899999998655 78899999999999998876666554433333456899999 7889999999998864 46
Q ss_pred eEEEEECCcchHHHHHHH------------hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHH
Q 022724 131 QAHACVGGKSVGEDIRKL------------EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (293)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~------------~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~ 198 (293)
++..++|+.......... ....+|+|+|++.+...... +...++++||+||+|++-.. ......
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--ESSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--SSHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--hhHHHH
Confidence 677777766544443322 13468999999998764322 12235789999999998432 233444
Q ss_pred HHhhCCCCccEEEEEeec
Q 022724 199 VYRYLPPDLQVVLISATL 216 (293)
Q Consensus 199 i~~~l~~~~q~v~~SAt~ 216 (293)
.+..+. ....+++|||+
T Consensus 389 ~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTP 405 (800)
T ss_dssp HHTTSE-EEEEEEECSCC
T ss_pred HHHHhh-hccEEEeeCCc
Confidence 455553 55678899997
No 78
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.67 E-value=6.1e-15 Score=136.34 Aligned_cols=130 Identities=16% Similarity=0.193 Sum_probs=101.1
Q ss_pred CCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
+|.. |++.|....-.+.+|+ +....||.|||+++.+|++-.... |..+.|++|+..||.|-.+.+..+...+|+
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 4654 9999999988888888 899999999999999998754433 456899999999999999999999999999
Q ss_pred eEEEEECC--------------------------------------------------cchHHHHHHHhcCCcEEEeChH
Q 022724 131 QAHACVGG--------------------------------------------------KSVGEDIRKLEHGVHVVSGTPG 160 (293)
Q Consensus 131 ~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~ilV~Tp~ 160 (293)
++.+..+. .+..+..... .|||.-+|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEccCc
Confidence 99988872 1111111222 3699999988
Q ss_pred HHH-HHHhcC------CCCCCCccEEEecchhhhh
Q 022724 161 RVC-DMIKRK------TLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 161 ~l~-~~l~~~------~~~~~~l~~iViDE~h~~~ 188 (293)
.+- ++|+.+ ....+.+.+.||||+|.++
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 774 465543 2234678999999999975
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.61 E-value=7.5e-16 Score=142.12 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=85.8
Q ss_pred CCCCCCcHHHHHHHHh----hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 51 ~~~~~~~~~Q~~~~~~----i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
.|| .|+|+|.+++.. +..|+++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l-- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL-- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG--
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc--
Confidence 467 699999998654 4578999999999999999999998764 468999999999999999887764
Q ss_pred cCCceEEEEECCcc--------hH------------------------HH---------------HHHHhcCCcEEEeCh
Q 022724 127 FINIQAHACVGGKS--------VG------------------------ED---------------IRKLEHGVHVVSGTP 159 (293)
Q Consensus 127 ~~~~~~~~~~~~~~--------~~------------------------~~---------------~~~~~~~~~ilV~Tp 159 (293)
++++..+.|... .. +. .+.....++|+|+|+
T Consensus 75 --~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 75 --GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp --TCCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred --CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 333333222110 00 00 011123569999999
Q ss_pred HHHHHHHhcCCC-------CCCCccEEEecchhhhh
Q 022724 160 GRVCDMIKRKTL-------RTRAIKLLVLDESDEML 188 (293)
Q Consensus 160 ~~l~~~l~~~~~-------~~~~l~~iViDE~h~~~ 188 (293)
..+..-...+.+ .+....++||||||.+.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999873322211 24567899999999994
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.54 E-value=1.2e-13 Score=129.90 Aligned_cols=155 Identities=16% Similarity=0.115 Sum_probs=107.3
Q ss_pred CCcHHHHHHHHhhh---------cCCcEEEEcCCCChhHHHHHHHHHhhhccCC----CceeEEEEcCCHHHHHHHHHHH
Q 022724 55 KPSAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~---------~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~l~~q~~~~~ 121 (293)
.++|+|.+++..+. .+++.++..+||+|||+.++..+...+...+ ...++||+||+ .|+.|+.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 58999999998864 4567999999999999887766655544332 23469999996 8999999999
Q ss_pred HHhhccCCceEEEEECCcchHH--HHHHHh------cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccH
Q 022724 122 LAIGDFINIQAHACVGGKSVGE--DIRKLE------HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (293)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~ 193 (293)
.++... .+.+..++++..... ...... ...+|+|+|++.+.... ..+....+++||+||+|++-... .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh-h
Confidence 988754 455666666643321 112211 13689999999887543 23444678999999999984332 2
Q ss_pred HHHHHHHhhCCCCccEEEEEeec
Q 022724 194 DQIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 194 ~~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
. ....+..+. ....+++|||+
T Consensus 210 ~-~~~al~~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 210 Q-TYLALNSMN-AQRRVLISGTP 230 (644)
T ss_dssp H-HHHHHHHHC-CSEEEEECSSC
T ss_pred H-HHHHHHhcc-cCcEEEEecCc
Confidence 2 222333343 56789999997
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.15 E-value=1.2e-10 Score=108.60 Aligned_cols=146 Identities=16% Similarity=0.215 Sum_probs=92.5
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhH--HHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKT--SMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT--~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
+++|+.+++.++.++.+++.|++|+||| .+++++.+..+... .+.++++++||..++.++.+.+.......++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7899999999999999999999999999 66777777665322 35689999999999999998887655444332110
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
. .+.. .....+ ..++-.+|+.. . +........+++++||||++++ + ...+..+++.++...|+|++.=
T Consensus 230 ~-~~~~--~~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 230 K-KRIP--EDASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp C-CSCS--CCCBTT---TSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEEC
T ss_pred H-hccc--hhhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcc
Confidence 0 0000 000000 01222223211 1 1111222337899999999955 3 4567788888888899988864
Q ss_pred e
Q 022724 215 T 215 (293)
Q Consensus 215 t 215 (293)
.
T Consensus 298 ~ 298 (608)
T 1w36_D 298 R 298 (608)
T ss_dssp T
T ss_pred h
Confidence 3
No 82
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.13 E-value=8.1e-11 Score=109.98 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCcHHHHHHHHh----hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q 022724 55 KPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (293)
Q Consensus 55 ~~~~~Q~~~~~~----i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (293)
.|+|.|.+.+.. +.+|+++++.+|||+|||++|++|++..+... +.+++|++||++++.|+.+.+..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 589999998864 45799999999999999999999999887653 468999999999999999999988776667
Q ss_pred eEEEEECC
Q 022724 131 QAHACVGG 138 (293)
Q Consensus 131 ~~~~~~~~ 138 (293)
++..+.|.
T Consensus 81 ~~~~l~gr 88 (620)
T 4a15_A 81 RAIPMQGR 88 (620)
T ss_dssp CEEECCCH
T ss_pred EEEEEECC
Confidence 76665553
No 83
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.05 E-value=3.6e-09 Score=99.66 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=52.6
Q ss_pred CCCCCcHHHHHHHHhhhc----CC-cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 52 GFEKPSAIQQRAVMPIIK----GR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 52 ~~~~~~~~Q~~~~~~i~~----~~-~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
+| .|+..|..++..+.+ |. ..++.|.||||||+.+.-.+ ... +..+|||+|+..+|.|+++.++.+..
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~-----~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EAL-----GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH-----TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHh-----CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 55 799999999887653 43 46788999999997665332 332 12489999999999999999999864
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.80 E-value=1.1e-07 Score=89.43 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHhhh----cCC-cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 022724 55 KPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~----~~~-~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (293)
.|+..|..++..+. +|. ...+.|.||+|||+...- ++.... ..+|||+|+..+|.|+++.++.+...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~~-----~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEVN-----KPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHC-----CCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHhC-----CCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 59999998888655 343 467889999999976543 223321 24899999999999999999998643
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.54 E-value=1.3e-06 Score=81.71 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
..+++.|.+++..++.+...+|.||+|+|||....- ++..+... .+.++++++||...++++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 357899999999988888899999999999976443 33333332 3458999999999999999887653
No 86
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.54 E-value=7.4e-07 Score=82.44 Aligned_cols=125 Identities=21% Similarity=0.261 Sum_probs=80.3
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
.+++.|++++..+..++.+++.||.|+|||... ..++..+... +.++++++||...+..+.+.+. .....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~~-------~~a~T 258 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL--GLEVGLCAPTGKAARRLGEVTG-------RTAST 258 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHT-------SCEEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc--CCeEEEecCcHHHHHHhHhhhc-------ccHHH
Confidence 478999999999999999999999999999653 2333444332 4579999999998888776431 11111
Q ss_pred EECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
++ . .+. . .|+ ............++|||||++++. ...+..+++.++...+++++.
T Consensus 259 ih------~---ll~----~---~~~----~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 259 VH------R---LLG----Y---GPQ----GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp HH------H---HTT----E---ETT----EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred HH------H---HHc----C---Ccc----hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 00 0 000 0 000 011112233467899999999873 335666777777777777764
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.7e-06 Score=83.01 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
..+++.|.+|+..++.+..++|.||.|+|||....-.+ ..+... .+.++++++||...++++.+++.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 35689999999999888889999999999996644333 332221 2458999999999999999988764
No 88
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.49 E-value=1.1e-06 Score=79.43 Aligned_cols=134 Identities=15% Similarity=0.206 Sum_probs=80.6
Q ss_pred HCCCCCCcHHHHHHHHhhhc----C-CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 50 QYGFEKPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~i~~----~-~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
-+.|..+++-|++++..+.. + ..++|.|+.|+|||... ..++..+..... .++++++||...+..+.+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~--- 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-TGIILAAPTHAAKKILSKLS--- 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-CCEEEEESSHHHHHHHHHHH---
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-ceEEEecCcHHHHHHHHhhh---
Confidence 35788999999999997653 2 38999999999999543 344444444322 36899999999888877654
Q ss_pred hccCCceEEEEECCcchHHHHHHHh----cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHH
Q 022724 125 GDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (293)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~ 200 (293)
+..+..++ ... .+. .....+.. .....+...+++||||++++. ...+..+.
T Consensus 95 ----~~~~~T~h------~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~ 149 (459)
T 3upu_A 95 ----GKEASTIH------SIL-KINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKILL 149 (459)
T ss_dssp ----SSCEEEHH------HHH-TEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHHH
T ss_pred ----ccchhhHH------HHh-ccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHHHH
Confidence 11111111 000 000 00000000 122345678999999999763 23455566
Q ss_pred hhCCCCccEEEEE
Q 022724 201 RYLPPDLQVVLIS 213 (293)
Q Consensus 201 ~~l~~~~q~v~~S 213 (293)
..++...+++++.
T Consensus 150 ~~~~~~~~~~~vG 162 (459)
T 3upu_A 150 STIPPWCTIIGIG 162 (459)
T ss_dssp HHSCTTCEEEEEE
T ss_pred HhccCCCEEEEEC
Confidence 6666556666554
No 89
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.42 E-value=3.7e-06 Score=80.59 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=53.9
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.+++.|.+|+..++.+...+|.||.|+|||.... .++..+... .+.++++++||...+.++.+.+...
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4689999999999888889999999999996643 333444332 3458999999999999999887653
No 90
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.37 E-value=9.3e-07 Score=83.21 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=53.1
Q ss_pred CCcHHHHHHHHhhhcCC-cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~-~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
.+++.|.+|+...+..+ -.+|.||.|+|||....-.+.+.+.. +.++++++||..-++++.+++...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 47899999999987655 57899999999997655444444433 458999999999999999888654
No 91
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.75 E-value=0.00085 Score=58.66 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
.++|+|...+..+...+-+++..+-+.|||......++..+... .+.++++++|+.+.+..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999998876567789999999999987766665544333 345899999999999988888877653
No 92
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.70 E-value=4.7e-05 Score=60.09 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=41.3
Q ss_pred HHhcCCCCEEEEecCCcccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 224 TTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
.+.++.+|..+.+...+....++.|.+..++... |...+.+++.... +++||||++++.++.++..|
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L 74 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEA-KMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYL 74 (191)
T ss_dssp --------------------CCSEEEEEECCGGG-HHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHH
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHH-HHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHH
Confidence 3457788988888877777889999999988776 9999999997754 58999999999999998865
No 93
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.60 E-value=0.00075 Score=62.69 Aligned_cols=143 Identities=12% Similarity=0.183 Sum_probs=87.3
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCC--ceE
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQA 132 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~--~~~ 132 (293)
.++|+|..++..+...+..++..+-|.|||.+....++..+...+ +.+++++.|+.+.+..+.+.++.+..... +..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 479999999988766678999999999999876655555544433 45899999999999999988887654432 111
Q ss_pred EEE-ECCcchHHHHHHHhcCCcEEEe--ChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCC--CCc
Q 022724 133 HAC-VGGKSVGEDIRKLEHGVHVVSG--TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDL 207 (293)
Q Consensus 133 ~~~-~~~~~~~~~~~~~~~~~~ilV~--Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~--~~~ 207 (293)
... .+... + .+.++..|.+. .|+.+.. . +.+++|+||+|.+-+. ...+..+...+. ...
T Consensus 242 ~~~~~~~~~----i-~~~nGs~i~~~s~~~~~lrG----~-----~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~ 305 (592)
T 3cpe_A 242 GIVEWNKGS----I-ELDNGSSIGAYASSPDAVRG----N-----SFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRS 305 (592)
T ss_dssp CEEEECSSE----E-EETTSCEEEEEECCHHHHHH----S-----CCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCC
T ss_pred ccccCCccE----E-EecCCCEEEEEeCCCCCccC----C-----CcceEEEehhccCCch--hHHHHHHHHHhccCCCc
Confidence 000 01110 0 11234444433 2443322 1 3578999999987432 233344443343 235
Q ss_pred cEEEEEe
Q 022724 208 QVVLISA 214 (293)
Q Consensus 208 q~v~~SA 214 (293)
+++++|.
T Consensus 306 ~ii~isT 312 (592)
T 3cpe_A 306 KIIITTT 312 (592)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 5555543
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.50 E-value=0.00041 Score=53.87 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=22.1
Q ss_pred cHHHHHHHHhhh---------cCCcEEEEcCCCChhHHHH
Q 022724 57 SAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 57 ~~~Q~~~~~~i~---------~~~~~li~~~Tg~GKT~~~ 87 (293)
.+.|.+++..+. .|+.+++.||+|+|||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 445665555432 4788999999999999543
No 95
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.50 E-value=0.00042 Score=61.45 Aligned_cols=85 Identities=24% Similarity=0.185 Sum_probs=52.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (293)
+-.++.|+.|+|||.... +.+.. .+.+|++|+++++.++.+.+.+.... .
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~~~----------------------~ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASGII----------------------V 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTSCC----------------------C
T ss_pred cEEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcCcc----------------------c
Confidence 357899999999996532 22221 25699999999999988866432100 0
Q ss_pred CCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 151 ~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
....-|.|-++++. +.........+.+||||+-++
T Consensus 212 ~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 212 ATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp CCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS
T ss_pred cccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC
Confidence 01233566665542 222222234799999999865
No 96
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.45 E-value=0.00029 Score=66.14 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
..+++-|.+++.. .+..++|.|+.|||||....--+.+.+.... ...+++++++|+..+.++.+++..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999983 3678999999999999776555555554322 23489999999999999999998764
No 97
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.44 E-value=0.00066 Score=53.09 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
+|+-.++.||.|+|||...+-.+ ...... +.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~-~~~~~~--g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV-EIYKLG--KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH-HHHHHT--TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHH-HHHHHC--CCeEEEEeecc
Confidence 46678899999999997654333 333222 34788888874
No 98
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.33 E-value=0.00029 Score=53.94 Aligned_cols=51 Identities=33% Similarity=0.454 Sum_probs=44.2
Q ss_pred ccCCCceEEEEEecCcccHHHHHHHHHhhCCCCcEEEEcccchhHHHHHhhC
Q 022724 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~iIF~~s~~~a~~l~~~L 292 (293)
..+.++.|.+..++... |...+..+++...++++||||++++.++.++..|
T Consensus 5 ~~~~~i~~~~~~~~~~~-K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L 55 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREEN-KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDEL 55 (163)
T ss_dssp -CCCCEEEEEEECCGGG-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHH
T ss_pred cCcccceEEEEECChHH-HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 45567999999988766 9999999998888889999999999999998865
No 99
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.25 E-value=0.0005 Score=64.94 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
.+++-|++++... +.+++|.|+.|||||....--+.+.+.. .-...++++++.|+..+.++.+++.....
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999863 6789999999999997765545444433 22335899999999999999999987643
No 100
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.24 E-value=0.00088 Score=54.03 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=52.2
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
.|.-+++.|++|+|||...+-.+ .++... +.+++++.|...- . . ...+....|+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~-~r~~~~--g~kVli~~~~~d~--r-~--~~~i~srlG~~~---------------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRL-HRLEYA--DVKYLVFKPKIDT--R-S--IRNIQSRTGTSL---------------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHH-HHHHHT--TCCEEEEEECCCG--G-G--CSSCCCCCCCSS----------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHH-HHHHhc--CCEEEEEEeccCc--h-H--HHHHHHhcCCCc----------------
Confidence 45678889999999997654433 333332 4578888775531 0 0 001122222111
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhh
Q 022724 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~ 187 (293)
..+-+.+.+.+...+.... .-.+.++|||||++.+
T Consensus 67 ---~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 ---PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp ---CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred ---cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1234566666766665432 2345799999999975
No 101
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.20 E-value=0.0011 Score=52.03 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
+|+-.++.||+|+|||...+-. ..+.... +.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~-a~r~~~~--g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRR-IRRAKIA--KQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH-HHHHHHT--TCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHH-HHHHHHC--CCEEEEEEecc
Confidence 4567889999999999765543 3443332 45789998874
No 102
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.20 E-value=0.00022 Score=53.79 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
.|+.+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688999999999999943
No 103
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.11 E-value=0.0008 Score=52.63 Aligned_cols=52 Identities=29% Similarity=0.224 Sum_probs=43.7
Q ss_pred cccCCCceEEEEEecCcccHHHHHHHHHhhC-CCCcEEEEcccchhHHHHHhhC
Q 022724 240 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~-~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...+.++.|.+..++... |...|.++++.. .++++||||++++.++.++..|
T Consensus 14 ~~~~~~i~q~~~~v~~~~-K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L 66 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFL 66 (185)
T ss_dssp --CCTTEEEEEEECCGGG-HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCcHH-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHH
Confidence 345678999999998776 999999999876 4679999999999999998865
No 104
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.08 E-value=0.0016 Score=51.88 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
|+-.+++|+.|+|||...+-.+...... +.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC
Confidence 4556789999999997655444433333 457899998764
No 105
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.08 E-value=0.0061 Score=48.21 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=25.6
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
..-.+|||||+|.+... ....+..++...+....+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987433 23445555666555566665543
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.003 Score=53.69 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhh
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTV 95 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l 95 (293)
+.++++.||+|+|||...- .++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 4689999999999996543 344444
No 107
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.05 E-value=0.0013 Score=66.25 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=55.4
Q ss_pred CCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC---CceeEEEEcCCHHHHHHHHHHHHH
Q 022724 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~---~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
.+|+-|.+++..- +++++|.|+.|||||.+.+--++..+.... ...+++++++|++.+.++.+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 5899999998865 889999999999999876666666665532 345899999999999999998876
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.05 E-value=0.0029 Score=53.90 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++.+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999543
No 109
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.97 E-value=0.0076 Score=44.86 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCChhHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~ 87 (293)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35679999999999999654
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.96 E-value=0.0063 Score=52.17 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=24.9
Q ss_pred CcHHHHHHHHhhh----cCC---cEEEEcCCCChhHHHHH
Q 022724 56 PSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 56 ~~~~Q~~~~~~i~----~~~---~~li~~~Tg~GKT~~~~ 88 (293)
.+|||.+++..+. +|+ .+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888877654 443 38999999999996544
No 111
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.95 E-value=0.0023 Score=60.92 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHHHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhh
Q 022724 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIG 125 (293)
Q Consensus 54 ~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (293)
..+++-|++++.. .+.+++|.|+.|||||.+..--+.+.+.... ...++++++.|+..+.++.+++..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999886 3578999999999999776555555554322 33579999999999999999988764
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.92 E-value=0.0053 Score=49.44 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=28.5
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
.|+-.++.|+.|+|||...+-.+...... +.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecCC
Confidence 46778889999999997655444443322 457888888653
No 113
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.89 E-value=0.0045 Score=55.24 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
.+++++.||+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 368999999999999543
No 114
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.85 E-value=0.0039 Score=54.11 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.+.++++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3468999999999999543
No 115
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.81 E-value=0.0025 Score=47.45 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCChhHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~ 86 (293)
..+.++++.||+|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 4567999999999999943
No 116
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.77 E-value=0.0071 Score=56.37 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=72.6
Q ss_pred CCcHHHHHHHHhhhc--CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q 022724 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~~--~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (293)
.+|.-|++++..+.. ....++.|+-|.|||.+.-+ ++..+.. +++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~~-----~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIAG-----RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSSS-----CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHHh-----CcEEECCCHHHHHHHHHHhhC---------
Confidence 689999999998875 34579999999999944333 3333322 468899998877765553211
Q ss_pred EEEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
.+-...|+.+.. ...+.+++|||||=.+. ...+..++.. ...++|
T Consensus 240 --------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~----~~~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSR----FPRTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTT----SSEEEE
T ss_pred --------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhh----CCeEEE
Confidence 122235655332 13458999999997763 3445555543 336778
Q ss_pred EeecC
Q 022724 213 SATLP 217 (293)
Q Consensus 213 SAt~~ 217 (293)
|.|+.
T Consensus 285 ~tTv~ 289 (671)
T 2zpa_A 285 TTTVQ 289 (671)
T ss_dssp EEEBS
T ss_pred EecCC
Confidence 88873
No 117
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.76 E-value=0.0094 Score=49.36 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.++++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999654
No 118
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.68 E-value=0.0027 Score=55.26 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=22.1
Q ss_pred EEEecchhhhhccccHHH-HHHHHhhCCCCccEEEEEee
Q 022724 178 LLVLDESDEMLSRGFKDQ-IYDVYRYLPPDLQVVLISAT 215 (293)
Q Consensus 178 ~iViDE~h~~~~~~~~~~-~~~i~~~l~~~~q~v~~SAt 215 (293)
+|||||+|.+........ +..+.... ....+|+.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 999999999865432334 44555444 34455554433
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.64 E-value=0.0056 Score=47.98 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=26.9
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
.|+-.++.||.|+|||.-.+-.+-+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 36678999999999995544444333333 3578998886
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.61 E-value=0.0035 Score=50.52 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.++++++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999543
No 121
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.011 Score=49.11 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=33.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHh--hhcCCcEEEEcCCCChhHHHH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~--i~~~~~~li~~~Tg~GKT~~~ 87 (293)
..+|+++.-.+...+.+.+.- ..|. ...+.+.. +..++++++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVV-ELPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHT-HHHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH-HHHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 467888877777777776531 1111 11122222 235678999999999999543
No 122
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.57 E-value=0.0027 Score=53.56 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+.++++.||+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 347999999999999654
No 123
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.56 E-value=0.024 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=18.0
Q ss_pred CcEEEEcCCCChhHHHHHHHHHhhhc
Q 022724 71 RDVIAQAQSGTGKTSMIALTVCQTVD 96 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~~~~~~~l~ 96 (293)
+++++.||+|+|||.... .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 789999999999995432 3334443
No 124
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.01 Score=50.20 Aligned_cols=39 Identities=15% Similarity=0.380 Sum_probs=24.8
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+-.++|+||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998533 2334555555555556666554
No 125
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.01 Score=50.96 Aligned_cols=43 Identities=5% Similarity=0.345 Sum_probs=28.3
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEeec
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
..+.+++|+||+|.+ +......+..++...+....+|+.|-..
T Consensus 132 ~~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 346789999999994 4444555666666666666666666544
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.46 E-value=0.011 Score=45.34 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
..++++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999543
No 127
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.43 E-value=0.0051 Score=49.01 Aligned_cols=99 Identities=6% Similarity=0.004 Sum_probs=53.0
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
.|.-.+++||.|+|||...+-.+ .+.... +.+++++.|...--.. -..+....|+...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~~--g~kvli~kp~~D~R~~----~~~I~Sr~G~~~~--------------- 84 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIYA--KQKVVVFKPAIDDRYH----KEKVVSHNGNAIE--------------- 84 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHHT--TCCEEEEEEC---------------CBTTBCCE---------------
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHHc--CCceEEEEeccCCcch----hhhHHHhcCCcee---------------
Confidence 46678999999999996554443 444333 4578999886541100 0112222232211
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHH
Q 022724 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~ 200 (293)
-+.|..+..+...+ ..+.++|+|||++.+. ......+..+.
T Consensus 85 ----a~~v~~~~di~~~i------~~~~dvV~IDEaQFf~-~~~v~~l~~la 125 (219)
T 3e2i_A 85 ----AINISKASEIMTHD------LTNVDVIGIDEVQFFD-DEIVSIVEKLS 125 (219)
T ss_dssp ----EEEESSGGGGGGSC------CTTCSEEEECCGGGSC-THHHHHHHHHH
T ss_pred ----eEEeCCHHHHHHHH------hcCCCEEEEechhcCC-HHHHHHHHHHH
Confidence 23444443333221 2467899999999764 34555566555
No 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.35 E-value=0.0079 Score=52.11 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999543
No 129
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.35 E-value=0.036 Score=43.43 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH-HHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (293)
...+++..++|.|||.+++-.++..+.. |.+++|+.=.+. .-..=.+.++.+ ++.+...-.+.....+...-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 3589999999999998887766666655 557788743221 000001111122 22222111111110000000
Q ss_pred hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhcccc--HHHHHHHHhhCCCCccEEEEEeecChhHHHHH
Q 022724 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (293)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~--~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~ 224 (293)
+. ......+..... .+.-..+++||+||+-.....++ ...+..++...+...-+|+.+--.|+.+.+.+
T Consensus 101 ----~~--~~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 101 ----DT--AACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp ----HH--HHHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred ----HH--HHHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 00 000111111111 12235689999999987655543 34566667766656666665555677666655
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.33 E-value=0.0069 Score=52.68 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.0
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999543
No 131
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.33 E-value=0.0093 Score=50.70 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=24.3
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
....+++|||+|.+........+..++...+...++|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999999852223334444455444455666543
No 132
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.19 E-value=0.026 Score=50.03 Aligned_cols=128 Identities=14% Similarity=0.270 Sum_probs=66.8
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (293)
-++++|++|+|||....--+ ..+... +.+++++. +.+.-+.+ .+..+....++.+.....+.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA-~~l~~~--G~kVllv~~D~~r~~a~e---qL~~~~~~~gv~~~~~~~~~---------- 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLA-YFYKKR--GYKVGLVAADVYRPAAYD---QLLQLGNQIGVQVYGEPNNQ---------- 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHH-HHHHHT--TCCEEEEEECCSCHHHHH---HHHHHHHTTTCCEECCTTCS----------
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHc--CCeEEEEecCccchhHHH---HHHHHHHhcCCceeeccccC----------
Confidence 57888999999996543222 222222 44566655 34443332 33334444444433221111
Q ss_pred cCCcEEEeChHHHH-HHHhcCCCCCCCccEEEecchhhhh---ccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHH
Q 022724 150 HGVHVVSGTPGRVC-DMIKRKTLRTRAIKLLVLDESDEML---SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (293)
Q Consensus 150 ~~~~ilV~Tp~~l~-~~l~~~~~~~~~l~~iViDE~h~~~---~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~ 225 (293)
.|..+. ..+.. ....+.+++|||++-... +..+...+..+.+...+..-++.++|+...+....+.
T Consensus 163 --------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 163 --------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp --------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH
T ss_pred --------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH
Confidence 122222 12221 112467889999987543 2334555666666666666677888887655444443
No 133
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.18 E-value=0.054 Score=46.15 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999654
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.09 E-value=0.076 Score=42.26 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=22.8
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
..-.+|||||+|.+... ....+...+...+....+|+.|.
T Consensus 125 ~~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEES
T ss_pred CCceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEeC
Confidence 34578999999987432 23334444444444455555543
No 135
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.95 E-value=0.047 Score=46.68 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=25.5
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
...+++|+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 44789999999988543 2344555666655566666554
No 136
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.025 Score=48.39 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
....++++||+|.+... ....+..++...+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 34579999999988533 23445555665555566666543
No 137
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.88 E-value=0.09 Score=44.34 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
...+++||||+|.|.... ...+...+..-++...+|+.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 457899999999985433 233344444434445555554
No 138
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.79 E-value=0.02 Score=48.68 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=32.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhh-----cCCcEEEEcCCCChhHHHH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII-----KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~-----~~~~~li~~~Tg~GKT~~~ 87 (293)
..+|+++.-...+.+.+.+.- . .| ...+.+. ..+++++.||+|+|||..+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i-~--~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAV-I--LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHT-H--HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHH-H--HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 457899877777777776531 1 11 1112222 2357999999999999654
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.68 E-value=0.07 Score=42.98 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=31.0
Q ss_pred hcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
..|.-+++.||+|+|||...+-.+...... +.+++++.-.. ...++.+.+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~-~~~~~~~~~~~ 72 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEE-HPVQVRQNMAQ 72 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSS-CHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccC-CHHHHHHHHHH
Confidence 356789999999999996543333333222 34577776432 24555555543
No 140
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.61 E-value=0.044 Score=46.16 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=24.2
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
+-.++||||+|.+.... ...+..++...+....+|+.|.
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeC
Confidence 46899999999985432 2334445555555566666553
No 141
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.57 E-value=0.032 Score=47.22 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++++++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 579999999999999543
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.51 E-value=0.07 Score=45.96 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=23.1
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
..-.++||||+|.+.... ...+...+...+....+|+.+
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 456799999999985332 333444455444444455544
No 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.02 E-value=0.18 Score=44.97 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=28.8
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~ 120 (293)
+..|.-+++.|++|+|||...+-.+....... +..++|+..... ..++..+
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s-~~~l~~r 250 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMS-AQQLVMR 250 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSC-HHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCC-HHHHHHH
Confidence 33567799999999999954433333322222 335777764322 2344444
No 144
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.01 E-value=0.11 Score=45.41 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
.+++++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999654
No 145
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.01 E-value=0.067 Score=46.74 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=13.8
Q ss_pred CcEEE--EcCCCChhHHHH
Q 022724 71 RDVIA--QAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li--~~~Tg~GKT~~~ 87 (293)
..++| .||.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46888 899999999543
No 146
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.99 E-value=0.33 Score=43.04 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=32.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEE
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHA 134 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (293)
-++++|++|+|||....--+ ..+... +.+++++. |.+.-+. +.++.+....++.+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~~--G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQKR--GYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFG 160 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHTT--TCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEEC
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHHC--CCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEe
Confidence 57889999999996543222 223332 44566655 4455443 3344455555655543
No 147
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.95 E-value=0.13 Score=40.84 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCChhHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~ 87 (293)
..|.-+++.||+|+|||...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHH
Confidence 35678999999999999543
No 148
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.93 E-value=0.057 Score=45.35 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.9
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
++++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 6999999999999543
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.85 E-value=0.21 Score=40.01 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCChhHHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTV 91 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~ 91 (293)
.|.-+++.||+|+|||......+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 56789999999999996544333
No 150
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.77 E-value=0.19 Score=37.81 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=54.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ ....+|+|+|. .+ ...+++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcC
Confidence 347999999999999999888764 67888899987765544333 24568999994 22 335778888
Q ss_pred cEEEecch
Q 022724 177 KLLVLDES 184 (293)
Q Consensus 177 ~~iViDE~ 184 (293)
+++|.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876543
No 151
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.74 E-value=0.031 Score=58.36 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
++++++.||+|+|||..+...+.+... .+.+++|+.....
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccc
Confidence 689999999999999765544444332 2557888876543
No 152
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.61 E-value=0.24 Score=37.72 Aligned_cols=73 Identities=16% Similarity=0.132 Sum_probs=53.7
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++..+..+.+.+.. .++.+..++|+.+..+....+ ....+|+|+|. . -...+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----V-CARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----S-CCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----c-hhcCCCcccC
Confidence 45899999999999998887764 367888899998766554333 24578999994 2 2345778888
Q ss_pred cEEEecc
Q 022724 177 KLLVLDE 183 (293)
Q Consensus 177 ~~iViDE 183 (293)
+++|.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888543
No 153
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.46 E-value=0.066 Score=44.77 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=24.5
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
+..|.-+++.||+|+|||..... +...+... .|.+++++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~-ia~~~~~~-~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ-QALQWGTA-MGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH-HHHHHHHT-SCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH-HHHHHHHH-cCCeEEEEeC
Confidence 44678899999999999954332 22222222 1335666653
No 154
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.44 E-value=0.33 Score=43.18 Aligned_cols=50 Identities=22% Similarity=0.102 Sum_probs=28.3
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
.|.-+++.|++|+|||...+-.+.+..... +..++|+..-.. ..|+..++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~~-~~~l~~R~ 248 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEMP-AAQLTLRM 248 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSSC-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCCC-HHHHHHHH
Confidence 456789999999999954433333332222 335777664322 33444443
No 155
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.44 E-value=0.16 Score=46.16 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=25.7
Q ss_pred CCccEEEecchhhhhccc--cHHHHHHHHhhCCCCccEEEEEeec
Q 022724 174 RAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATL 216 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~--~~~~~~~i~~~l~~~~q~v~~SAt~ 216 (293)
..-.+|+|||+|.+.... ....+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 445789999999986432 22344444444 245677777764
No 156
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.40 E-value=0.21 Score=45.11 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=26.3
Q ss_pred ccEEEecchhhhhccc----------cHHHHHHHHhhCCCCccEEEEEeecCh
Q 022724 176 IKLLVLDESDEMLSRG----------FKDQIYDVYRYLPPDLQVVLISATLPH 218 (293)
Q Consensus 176 l~~iViDE~h~~~~~~----------~~~~~~~i~~~l~~~~q~v~~SAt~~~ 218 (293)
.+.|++||+|.+.... ....+..++........++++.||=.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999986421 123344444545556667777777433
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.31 E-value=0.06 Score=45.48 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
..++++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999543
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.31 E-value=0.053 Score=43.82 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcCCCChhHHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~ 88 (293)
+..|.-+.+.||+|+|||....
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 4467889999999999995443
No 159
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.19 E-value=0.34 Score=36.43 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=53.6
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.++++.-+..+...++.. ++.+..++|+.+..+....+ .....|+|+|. . -...+++.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhcCCCcccC
Confidence 358999999999999998887653 66788899987765544333 24568999994 2 2335678888
Q ss_pred cEEEecch
Q 022724 177 KLLVLDES 184 (293)
Q Consensus 177 ~~iViDE~ 184 (293)
+++|.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88876543
No 160
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.14 E-value=0.043 Score=49.00 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.++++.||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999554
No 161
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.99 E-value=0.24 Score=40.95 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=19.1
Q ss_pred HhhhcCCcEEEEcCCCChhHHHHH
Q 022724 65 MPIIKGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 65 ~~i~~~~~~li~~~Tg~GKT~~~~ 88 (293)
.-+..|.-+++.||+|+|||....
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHH
Confidence 345578889999999999995543
No 162
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.98 E-value=0.092 Score=44.51 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=32.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccC---------CCc----eeEEEEcCCHHH-HHHHHHHHHHh
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---------SRE----VQALILSPTREL-ATQTEKVILAI 124 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~---------~~~----~~~lil~P~~~l-~~q~~~~~~~~ 124 (293)
|.-+++.|++|+|||...+-.+.+..... ..+ .+++|+.-...+ ..++...++.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 35789999999999965444443322111 112 578888755432 45555555444
No 163
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=93.95 E-value=0.29 Score=38.68 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=53.1
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ ....+|+|+|. . -...+++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----V-AARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----T-TTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----h-hhcCCCCccC
Confidence 348999999999999998887764 67888899998766554433 24568999994 2 2345778888
Q ss_pred cEEEe
Q 022724 177 KLLVL 181 (293)
Q Consensus 177 ~~iVi 181 (293)
+++|.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 164
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.77 E-value=0.51 Score=36.59 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=52.9
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCcc
Q 022724 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (293)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~ 177 (293)
.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ ....+|+|+|. .+. ..+++.+++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccCC
Confidence 47999999999999999888764 67888899987765544333 24578999993 222 356788888
Q ss_pred EEEecc
Q 022724 178 LLVLDE 183 (293)
Q Consensus 178 ~iViDE 183 (293)
++|.-+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887643
No 165
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.63 E-value=0.15 Score=44.22 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=25.2
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
.|.-++|.|++|+|||...+- +...+... +.+++|+....
T Consensus 73 ~G~li~I~G~pGsGKTtlal~-la~~~~~~--g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALA-IVAQAQKA--GGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHHHHT--TCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHH-HHHHHHHC--CCeEEEEECCC
Confidence 346789999999999954443 33333222 34677777543
No 166
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.56 E-value=0.28 Score=41.57 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccC---CCceeEEEEcCCHHH-HHHHHHHHHHh
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTREL-ATQTEKVILAI 124 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~---~~~~~~lil~P~~~l-~~q~~~~~~~~ 124 (293)
|.-+++.||+|+|||...+-.+....... ..+.+++|+.-...+ ..++...++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46799999999999965444333322210 113467887754432 34444444443
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.52 E-value=0.19 Score=43.03 Aligned_cols=51 Identities=25% Similarity=0.179 Sum_probs=29.7
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
+..|.-+++.|++|+|||...+-.+ ..+.. .+..++|+..-. -..|+..++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia-~~~a~--~g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMV-LSALN--DDRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHH-HHHHH--TTCEEEEEESSS-CHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH-HHHHH--cCCeEEEEeCCC-CHHHHHHHH
Confidence 3355679999999999995443333 33322 244677776432 234444444
No 168
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.44 E-value=0.093 Score=45.16 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCC
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~ 110 (293)
.|.-+++.||+|+|||...+..+...... +.+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 45779999999999996544333333222 3467777654
No 169
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.40 E-value=0.099 Score=44.23 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=50.2
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHhcC
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (293)
-+++.+|+|+|||...+-.+...... ..+.+++|+..-..+... ++++++-..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~---ra~~lGvd~----------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPA---YLRSMGVDP----------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHH---HHHHTTCCG-----------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHH---HHHHhCCCH-----------------------
Confidence 58899999999996555444443332 124578888876555322 344443211
Q ss_pred CcEEEeCh---HHH-HHHHhc-CCCCCCCccEEEecchhhhh
Q 022724 152 VHVVSGTP---GRV-CDMIKR-KTLRTRAIKLLVLDESDEML 188 (293)
Q Consensus 152 ~~ilV~Tp---~~l-~~~l~~-~~~~~~~l~~iViDE~h~~~ 188 (293)
.++++..| +.+ +..+.. ..+.-..+++||||-+..+.
T Consensus 83 d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12444433 333 222211 11223468999999999875
No 170
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=93.21 E-value=0.29 Score=37.74 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHH---H-hcCCcEE
Q 022724 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVV 155 (293)
Q Consensus 80 g~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~il 155 (293)
...|- ..+.-++... ..+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+.... . ....+|+
T Consensus 29 ~~~K~-~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKR-SFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHH-HHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHH-HHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 34565 3344444432 23458999999999999999887753 6778888888654443222 2 2456899
Q ss_pred EeChHHHHHHHhcCCCCCCCccEEEec
Q 022724 156 SGTPGRVCDMIKRKTLRTRAIKLLVLD 182 (293)
Q Consensus 156 V~Tp~~l~~~l~~~~~~~~~l~~iViD 182 (293)
|+|. .+ ...+++.+++++|.=
T Consensus 101 vaT~-~~-----~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 101 VATA-VA-----ARGLDISNVKHVINF 121 (185)
T ss_dssp EEEC------------CCCSBSEEEES
T ss_pred EEcC-hh-----hcCCCcccCCEEEEe
Confidence 9994 22 224677788887763
No 171
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.12 E-value=2.7 Score=35.35 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=29.2
Q ss_pred hHHHHHHHhcCCCCCCCccEEEecchhhhhc---cccHHHHHHHHhhCCCCccEEEEE
Q 022724 159 PGRVCDMIKRKTLRTRAIKLLVLDESDEMLS---RGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 159 p~~l~~~l~~~~~~~~~l~~iViDE~h~~~~---~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
...+...+....- .--+|||||+|.+.+ ..+...+..+.... .+..+|+.+
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g 177 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSG 177 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEE
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEc
Confidence 4455555544211 245899999999864 34555666665554 244555443
No 172
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.11 E-value=1.5 Score=39.97 Aligned_cols=96 Identities=6% Similarity=0.055 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEe
Q 022724 82 GKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSG 157 (293)
Q Consensus 82 GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~ 157 (293)
.+....+-.+...+.....+.++||.|+++.-+..+.+.++.... .++.+..++++.+..+....+ ....+|+|+
T Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 320 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 333333334444444434456899999999999999998887542 367788899988766554333 246789999
Q ss_pred ChHHHHHHHhcCCCCCCCccEEEecch
Q 022724 158 TPGRVCDMIKRKTLRTRAIKLLVLDES 184 (293)
Q Consensus 158 Tp~~l~~~l~~~~~~~~~l~~iViDE~ 184 (293)
|. . -...+++.+++++|.-..
T Consensus 399 T~-----~-~~~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 399 TD-----V-GARGMDFPNVHEVLQIGV 419 (563)
T ss_dssp CG-----G-GTSSCCCTTCCEEEEESC
T ss_pred cc-----h-hhcCCCcccCCEEEEECC
Confidence 96 2 234678888998886554
No 173
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.03 E-value=0.52 Score=40.28 Aligned_cols=54 Identities=9% Similarity=-0.010 Sum_probs=30.2
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccC---CCceeEEEEcCCHHH-HHHHHHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTREL-ATQTEKVILA 123 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~---~~~~~~lil~P~~~l-~~q~~~~~~~ 123 (293)
|.-+++.||+|+|||...+-.+....... ..+.+++|+.-...+ ..++...++.
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999965443333322211 023467887754431 3344444443
No 174
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.97 E-value=0.12 Score=44.54 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l 113 (293)
.|.-++|.||+|+|||... +.++..+... +.+++|+.....+
T Consensus 60 ~G~i~~I~GppGsGKSTLa-l~la~~~~~~--gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA-LHAIAEAQKM--GGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHHHHT--TCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhc--CCeEEEEeccccc
Confidence 3467899999999999543 3333333322 3467888764433
No 175
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.95 E-value=0.08 Score=48.48 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999543
No 176
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=92.85 E-value=0.16 Score=51.05 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=30.4
Q ss_pred EEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHH
Q 022724 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 112 (293)
-+|.|+.|||||...+--+.+.+.....+.++++++|...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 3788999999998776666665655555568999999764
No 177
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=92.70 E-value=0.33 Score=37.42 Aligned_cols=122 Identities=10% Similarity=0.090 Sum_probs=71.9
Q ss_pred CcHHHHHHHHhhhc--CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEE
Q 022724 56 PSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (293)
Q Consensus 56 ~~~~Q~~~~~~i~~--~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (293)
..+-|..++..++. .+-.+|.++-|++|+-..+-.++..-.. .|.++.+|+|+..-...+.+ ..++.-
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr~V~vLAp~~~s~~~l~~-------~~~l~~- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGREVQIIAADRRSQMNMKQ-------DERLSG- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTCCEEEECSTTHHHHHHSC-------TTTCSS-
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCeEEEEEcCchHHHHHHHh-------hcCcCc-
Confidence 45779999998864 3467788999999997754444443333 35689999999876555443 211110
Q ss_pred EEECCcchHHHHHHHhcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
+++ +. ..+......+..=+.+||||+.++.-......+....+ .+.|+|++-
T Consensus 105 -------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~---~naqvvll~ 156 (189)
T 2l8b_A 105 -------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAAR---HNVQVLITD 156 (189)
T ss_dssp -------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred -------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHHHHh---cCCEEEEeC
Confidence 011 11 11222233334556899999998854433333333322 457888875
Q ss_pred ee
Q 022724 214 AT 215 (293)
Q Consensus 214 At 215 (293)
-+
T Consensus 157 ~~ 158 (189)
T 2l8b_A 157 SG 158 (189)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 178
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.41 E-value=2.1 Score=39.26 Aligned_cols=87 Identities=7% Similarity=0.088 Sum_probs=61.7
Q ss_pred HHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHH
Q 022724 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMI 166 (293)
Q Consensus 91 ~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l 166 (293)
+...+.....+.++||.|+++.-+..+.+.++.... .++.+..++|+.+..+..+.+ ....+|+|+|. .
T Consensus 278 l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~- 350 (579)
T 3sqw_A 278 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V- 350 (579)
T ss_dssp HHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-
T ss_pred HHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----h-
Confidence 334444334456899999999999999998887542 367788899988766554333 24678999995 2
Q ss_pred hcCCCCCCCccEEEecch
Q 022724 167 KRKTLRTRAIKLLVLDES 184 (293)
Q Consensus 167 ~~~~~~~~~l~~iViDE~ 184 (293)
-...+++.+++++|.-+.
T Consensus 351 ~~~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 351 GARGMDFPNVHEVLQIGV 368 (579)
T ss_dssp GTSSCCCTTCCEEEEESC
T ss_pred hhcCCCcccCCEEEEcCC
Confidence 234678888999887654
No 179
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.09 E-value=1.2 Score=40.08 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=39.3
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (293)
.|....+.|-||+|||+...-.+ .. . +..+|||+|+...|.++++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~~---~--~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-ER---H--AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-HH---S--SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-HH---h--CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45678999999999996533222 21 1 22589999999999999999998764
No 180
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.03 E-value=1.1 Score=38.79 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=53.6
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCC
Q 022724 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~ 175 (293)
.+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+....+ ....+|+|+|. .+ ...+++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HH-HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcCCCccc
Confidence 4568999999999999999888753 67888899988765544333 24578999995 22 23577888
Q ss_pred ccEEEe
Q 022724 176 IKLLVL 181 (293)
Q Consensus 176 l~~iVi 181 (293)
++++|.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 181
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.00 E-value=0.37 Score=40.70 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=31.0
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
+..|.-+++.|++|+|||...+-.+.+.... +..++|++-- .-..|+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC-CCHHHHHHHHHH
Confidence 3356779999999999995443333333322 2467777643 334455554443
No 182
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.88 E-value=0.68 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
.-+.+.||+|+|||....
T Consensus 132 ~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999995443
No 183
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.80 E-value=0.63 Score=35.29 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=53.7
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ ....+|+|+|.- -...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhC
Confidence 347999999999999999888764 67888899987765544333 245789999951 2235677788
Q ss_pred cEEEecch
Q 022724 177 KLLVLDES 184 (293)
Q Consensus 177 ~~iViDE~ 184 (293)
+++|.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 88876443
No 184
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.74 E-value=0.61 Score=44.46 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.4
Q ss_pred cEEEEcCCCChhHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~ 88 (293)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999996543
No 185
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.70 E-value=0.062 Score=47.62 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=36.0
Q ss_pred ccccCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 30 EAITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 30 ~~~~~f~~~~l~~~i~~~l~~~~---~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
.|..+|++.+-.++..+.+.+.= +..|.-++..- +...+.+++.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHHH
Confidence 35568999988888877776531 12333333221 123478999999999999653
No 186
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.67 E-value=0.11 Score=44.74 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=26.0
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 111 (293)
.|.-+++.|++|+|||...+-.+...... +.+++|+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 45679999999999996554433333322 34677777643
No 187
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.03 E-value=1.6 Score=38.18 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=20.8
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCC
Q 022724 29 VEAITSFDAMGIKDDLLRGIYQYGFEK 55 (293)
Q Consensus 29 ~~~~~~f~~~~l~~~i~~~l~~~~~~~ 55 (293)
+.++..++..++++..++.|++.||.+
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~t 106 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLHT 106 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCCB
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 445666777789999999998888773
No 188
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=90.76 E-value=0.88 Score=38.10 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=52.1
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-++.+.+.+.. .++.+..++|+.+..++...+ ....+|+|+|. . -...+++.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----v-a~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----V-AARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----T-TTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----h-hhcCccccce
Confidence 45899999999999888887654 367888999998766554433 24578999994 2 2335677888
Q ss_pred cEEEe
Q 022724 177 KLLVL 181 (293)
Q Consensus 177 ~~iVi 181 (293)
+++|.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88774
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.72 E-value=0.48 Score=49.76 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=31.7
Q ss_pred hcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~ 118 (293)
..|.++++.+|+|+|||......+.+.+.. |.+++|+.- .++.+++.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECT-TSCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEc-cccHHHHH
Confidence 356899999999999997666555555544 446777763 34444444
No 190
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.68 E-value=0.29 Score=47.43 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
.++++++||+|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 358999999999999543
No 191
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.55 E-value=0.38 Score=41.36 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.+.++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999654
No 192
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.55 E-value=7.3 Score=33.07 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=56.5
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH---h-cCCcEEEeChHHHHHHHhcCCCCCCC
Q 022724 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRA 175 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ilV~Tp~~l~~~l~~~~~~~~~ 175 (293)
.+.++||.++++.-+..+.+.++.. +..+..++|+.+..+..+.+ . ...+|+|+|. . -...+++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----V-LARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----G-GSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhcCCCccc
Confidence 3468999999999999999888754 56788899987765544333 2 4568999995 2 234678889
Q ss_pred ccEEEecchh
Q 022724 176 IKLLVLDESD 185 (293)
Q Consensus 176 l~~iViDE~h 185 (293)
++++|.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9999876654
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.21 E-value=0.88 Score=41.20 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=25.8
Q ss_pred HHHHHHCCCCCCcHHHHHHHH-hhhcCCcEEEEcCCCChhHHH
Q 022724 45 LRGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~-~i~~~~~~li~~~Tg~GKT~~ 86 (293)
...+.+.|. +++.+...+. .+..|.+++++||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555552 3333444333 356788999999999999953
No 194
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.21 E-value=3.1 Score=38.39 Aligned_cols=82 Identities=10% Similarity=0.135 Sum_probs=57.2
Q ss_pred HHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHH
Q 022724 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMI 166 (293)
Q Consensus 91 ~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l 166 (293)
++..+.....+.++||.|+++.-++++.+.++.. ++.+..++++.+..+..+.+ ....+|+|+|. .
T Consensus 257 l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a 326 (591)
T 2v1x_A 257 IVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------A 326 (591)
T ss_dssp HHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------T
T ss_pred HHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------h
Confidence 3344433334568999999999999999988753 67888999998766554333 24568999994 1
Q ss_pred hcCCCCCCCccEEEec
Q 022724 167 KRKTLRTRAIKLLVLD 182 (293)
Q Consensus 167 ~~~~~~~~~l~~iViD 182 (293)
-...+++.+++++|.-
T Consensus 327 ~~~GID~p~V~~VI~~ 342 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHH 342 (591)
T ss_dssp SCTTCCCSCEEEEEES
T ss_pred hhcCCCcccccEEEEe
Confidence 2345677788887743
No 195
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.09 E-value=0.25 Score=43.74 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
...|++|.|+||+|||...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4579999999999999764
No 196
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.73 E-value=0.27 Score=50.77 Aligned_cols=86 Identities=15% Similarity=0.269 Sum_probs=54.2
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (293)
|+-+.+.+|.|||||...+..+-+.... +..++|+.+-.++.... +++++-+++
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~---g~~~~~i~~e~~~~~~~---~~~~Gv~~~-------------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY---ARKLGVDID-------------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHH---HHHTTCCGG--------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCCHHH---HHHcCCCHH--------------------
Confidence 4679999999999997765544443333 55789999877765554 444433221
Q ss_pred cCCcEEEeChHH---HHH----HHhcCCCCCCCccEEEecchhhhhc
Q 022724 150 HGVHVVSGTPGR---VCD----MIKRKTLRTRAIKLLVLDESDEMLS 189 (293)
Q Consensus 150 ~~~~ilV~Tp~~---l~~----~l~~~~~~~~~l~~iViDE~h~~~~ 189 (293)
++++.-|+. .+. +++++ .+++||||.+..+..
T Consensus 1485 ---~l~~~~p~~~e~~l~~~~~~~~s~-----~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ---NLLCSQPDTGEQALEICDALARSG-----AVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ---GCEEECCSSHHHHHHHHHHHHHHT-----CCSEEEESCSTTCCC
T ss_pred ---HeEEeCCCcHHHHHHHHHHHHHcC-----CCCEEEEccHHhCCc
Confidence 355555532 222 33333 367899999988753
No 197
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.72 E-value=0.16 Score=44.37 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=33.2
Q ss_pred cccCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~---~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
|..+|++.+=-++..+.+++.= +..|.-++..- +...+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 4568999876667777776531 11222222111 223478999999999999653
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.61 E-value=0.11 Score=43.52 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=31.7
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHh--hhcCCcEEEEcCCCChhHHHH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~--i~~~~~~li~~~Tg~GKT~~~ 87 (293)
..+|+++.-.+.+.+.+.+. ...|.... +.+.. +..++.+++.||+|+|||...
T Consensus 11 ~~~~~di~G~~~~~~~l~~~-v~~~~~~~-~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQEL-VQYPVEHP-DKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHH-HHHHHHCH-HHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHH-HHHHhhCH-HHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 46788887666666666542 11111000 11111 234678999999999999654
No 199
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.57 E-value=0.58 Score=41.24 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=19.2
Q ss_pred HHHHHHHhhh--cCCcEEEEcCCCChhHHH
Q 022724 59 IQQRAVMPII--KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 59 ~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~ 86 (293)
-+..++..+. .|..++|.||||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 3444555444 345689999999999953
No 200
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=89.36 E-value=1.4 Score=38.06 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=54.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-+..+.+.+... +..+..++|+.+..+....+ ....+|+|+|. . -...+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCC
Confidence 358999999999999999988764 56788899988766554433 24568999995 2 2346788899
Q ss_pred cEEEecc
Q 022724 177 KLLVLDE 183 (293)
Q Consensus 177 ~~iViDE 183 (293)
+++|.-+
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988533
No 201
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.34 E-value=0.21 Score=50.71 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.0
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
++-+.+|+||+-.-+|..-...+...++...+++-+|..+
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 4557899999987777766777777777765555555543
No 202
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.33 E-value=0.49 Score=37.32 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=25.4
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhHHH
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~ 86 (293)
+.-|..++..+..|.-+.+.||+|+|||..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 455677888888999999999999999954
No 203
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.28 E-value=0.16 Score=45.20 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=34.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhh--hcCCcEEEEcCCCChhHHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPI--IKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i--~~~~~~li~~~Tg~GKT~~~ 87 (293)
|..+|++.+=-+++.+.+++.= ..|.. ..+.+..+ ...+.+++.||+|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V-~~pl~-~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVV-ELPLL-SPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHT-HHHHH-CHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHH-HHHhc-CHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 4467999887777777777631 11110 11222222 24578999999999999653
No 204
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.26 E-value=0.53 Score=42.53 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHH
Q 022724 44 LLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 44 i~~~l~~~~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~ 86 (293)
+.+.+.+ .+.--...=..+.-.+..+.++++.||+|+|||..
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3444443 33323333345555667889999999999999954
No 205
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.06 E-value=2.9 Score=35.37 Aligned_cols=52 Identities=21% Similarity=0.394 Sum_probs=29.0
Q ss_pred ccEEEecchhhhh-ccccHHHHHHHHhhCCCCccEEEEEeecChhHHHHHHhc
Q 022724 176 IKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 227 (293)
Q Consensus 176 l~~iViDE~h~~~-~~~~~~~~~~i~~~l~~~~q~v~~SAt~~~~~~~~~~~~ 227 (293)
.+++++|.+-... +......+..+.+.+.+...++.+.++...+..+.++.+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 3566777765432 123344455555555556667777777766555555443
No 206
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.93 E-value=0.14 Score=45.42 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=32.6
Q ss_pred cccCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~---~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
|..+|++.+=-++..+.+.+.= +..|.-++..- +...+.+++.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 4567999876666666665531 11222221111 223478999999999999653
No 207
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.93 E-value=0.38 Score=36.51 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++++++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 368999999999999543
No 208
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.91 E-value=7.2 Score=36.43 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=58.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH---h-cCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-++.+.+.++.. ++++..++++.+..+..+.+ . ...+|+|+|. . -...+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCCC
Confidence 458999999999999998887764 67788888887655544432 2 4578999995 2 2456788899
Q ss_pred cEEEecchhhh
Q 022724 177 KLLVLDESDEM 187 (293)
Q Consensus 177 ~~iViDE~h~~ 187 (293)
+++|+-|++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999998764
No 209
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.89 E-value=0.22 Score=38.17 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
.|+-++++||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999954
No 210
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.83 E-value=0.52 Score=45.09 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChhHHH
Q 022724 71 RDVIAQAQSGTGKTSM 86 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~ 86 (293)
+.+++.||.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999954
No 211
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.71 E-value=0.44 Score=40.54 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCChhHH
Q 022724 67 IIKGRDVIAQAQSGTGKTS 85 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~ 85 (293)
+..|..++++||||+|||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4478999999999999995
No 212
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=88.58 E-value=2.2 Score=36.70 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=53.3
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ ....+|+|+|. . -...+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCCccCC
Confidence 358999999999999999888764 56788888887765544333 24568999994 2 2345778888
Q ss_pred cEEEecc
Q 022724 177 KLLVLDE 183 (293)
Q Consensus 177 ~~iViDE 183 (293)
+++|.-+
T Consensus 328 ~~Vi~~~ 334 (400)
T 1s2m_A 328 NVVINFD 334 (400)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8887543
No 213
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.48 E-value=3.2 Score=36.49 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=52.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCccE
Q 022724 103 QALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (293)
Q Consensus 103 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~ 178 (293)
++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ ....+|+|+|. +-...+++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 4999999999999998887653 67888899997766554433 24578999996 2334678889998
Q ss_pred EEec
Q 022724 179 LVLD 182 (293)
Q Consensus 179 iViD 182 (293)
+|.-
T Consensus 372 VI~~ 375 (434)
T 2db3_A 372 VINY 375 (434)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8753
No 214
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=88.20 E-value=0.087 Score=40.09 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=49.7
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCC
Q 022724 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~ 175 (293)
.+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ ....+|+|+|. .+. ..+++..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~-----~Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VAA-----RGIDIPD 98 (170)
Confidence 3458999999999999888877653 56777888886654443332 13457999983 222 2456667
Q ss_pred ccEEEecch
Q 022724 176 IKLLVLDES 184 (293)
Q Consensus 176 l~~iViDE~ 184 (293)
++++|.-+.
T Consensus 99 ~~~Vi~~~~ 107 (170)
T 2yjt_D 99 VSHVFNFDM 107 (170)
Confidence 777765443
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.36 E-value=0.18 Score=44.62 Aligned_cols=54 Identities=22% Similarity=0.240 Sum_probs=32.2
Q ss_pred cccCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
|..+|++.+=-.++.+.+.+. -+..|.-++..- +...+.+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 346889987666666666542 111222222111 223478999999999999653
No 216
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=88.28 E-value=2.2 Score=35.97 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=52.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-+..+.+.++.. +..+..++|+.+..+....+ ....+|+|+|. .+.. .+++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~-----Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSR-----GIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHH-----HCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhc-----CCCcccC
Confidence 457999999999999999888764 56788889887765544333 24568999995 2222 4667788
Q ss_pred cEEEecc
Q 022724 177 KLLVLDE 183 (293)
Q Consensus 177 ~~iViDE 183 (293)
+++|.-+
T Consensus 308 ~~Vi~~~ 314 (367)
T 1hv8_A 308 NCVINYH 314 (367)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8887644
No 217
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.21 E-value=0.53 Score=40.55 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=17.4
Q ss_pred hhcCCcEEEEcCCCChhHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~ 86 (293)
+..|..++++||||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45789999999999999953
No 218
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.18 E-value=0.26 Score=38.44 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.++.++++|++|+|||...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5778999999999999654
No 219
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.06 E-value=1.1 Score=48.55 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=40.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHH-H---HHHhhhcCCcEEEEcCCCChhHHHHHHH--HHhhhccCCCceeEEEEcCC
Q 022724 41 KDDLLRGIYQYGFEKPSAIQQ-R---AVMPIIKGRDVIAQAQSGTGKTSMIALT--VCQTVDTSSREVQALILSPT 110 (293)
Q Consensus 41 ~~~i~~~l~~~~~~~~~~~Q~-~---~~~~i~~~~~~li~~~Tg~GKT~~~~~~--~~~~l~~~~~~~~~lil~P~ 110 (293)
...+.+.+.+.|+. +++.+. . ....+..+..++++||||+|||.++-.. ++..+.. ...+..++-|.
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~--~~~~~~~inpk 963 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDG--HANVVYVIDTK 963 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTC--CEEEEEEECTT
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcC--CCceEEEeCCC
Confidence 34566667777766 666553 2 3334456788999999999999876432 2333322 23345555564
No 220
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.05 E-value=2.1 Score=36.59 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=54.7
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH---h-cCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+....+ . ....|+|+|. . -...+++..+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gidi~~~ 319 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERV 319 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCBCCTTE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCCCcccC
Confidence 458999999999999999887753 67788889887765544333 2 3568999994 1 2346788889
Q ss_pred cEEEecch
Q 022724 177 KLLVLDES 184 (293)
Q Consensus 177 ~~iViDE~ 184 (293)
+++|.-+.
T Consensus 320 ~~Vi~~~~ 327 (391)
T 1xti_A 320 NIAFNYDM 327 (391)
T ss_dssp EEEEESSC
T ss_pred CEEEEeCC
Confidence 99887554
No 221
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.03 E-value=1.8 Score=38.03 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=59.1
Q ss_pred CCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEC--------CcchHHHHHHH--
Q 022724 79 SGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG--------GKSVGEDIRKL-- 148 (293)
Q Consensus 79 Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-- 148 (293)
..++|... +.-++........+.++||.++++.-+..+.+.++.. ++++..++| +.+..++...+
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~ 414 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDE 414 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHH
T ss_pred CCChHHHH-HHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHH
Confidence 44556533 3334443321123568999999999999998888765 677888888 54443333222
Q ss_pred --hcCCcEEEeChHHHHHHHhcCCCCCCCccEEEecchh
Q 022724 149 --EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (293)
Q Consensus 149 --~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~h 185 (293)
....+|+|+|. .+ ...+++..++++|+-+..
T Consensus 415 F~~~~~~vLv~T~-----~~-~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 415 FARGEFNVLVATS-----VG-EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHTSCSEEEECG-----GG-GGGGGSTTCCEEEESSCC
T ss_pred HhcCCceEEEECC-----cc-ccCCCchhCCEEEEeCCC
Confidence 24568999994 22 235678888888866543
No 222
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.88 E-value=1.1 Score=36.30 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.+.++++.||+|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4679999999999999543
No 223
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.81 E-value=0.27 Score=40.31 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.9
Q ss_pred hhcCCcEEEEcCCCChhHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~ 86 (293)
+..|.-++++||||+|||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45678899999999999954
No 224
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.68 E-value=0.3 Score=41.33 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred HHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 62 RAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 62 ~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
.+...+..++++++.||+|+|||...
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 33344557899999999999999543
No 225
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.65 E-value=0.52 Score=41.00 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=27.5
Q ss_pred CccEEEecchhhhhcc---ccHHHHHHHHhhCCC-CccEEEEEeecC
Q 022724 175 AIKLLVLDESDEMLSR---GFKDQIYDVYRYLPP-DLQVVLISATLP 217 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~---~~~~~~~~i~~~l~~-~~q~v~~SAt~~ 217 (293)
.-.++|+||+|.++.. .....+..+.+..++ +.-+++.|-.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 4578999999999852 244556666666553 455666655553
No 226
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=87.59 E-value=2.3 Score=36.77 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=53.3
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCcc
Q 022724 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (293)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~ 177 (293)
.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ ....+|+|+|. . -...+++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCcccCC
Confidence 48999999999999998887753 56788899987765544333 24568999995 2 23467888899
Q ss_pred EEEecc
Q 022724 178 LLVLDE 183 (293)
Q Consensus 178 ~iViDE 183 (293)
++|.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888643
No 227
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.43 E-value=0.11 Score=44.22 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=31.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhh-----cCCcEEEEcCCCChhHHHH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII-----KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~-----~~~~~li~~~Tg~GKT~~~ 87 (293)
..+|++++=.+.+.+.+.+.- . .|.. .+.+. ..+.+++.||+|+|||..+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v-~--~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV-I--LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH-H--HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH-H--HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 467898876777777765421 0 1111 12222 2368999999999999544
No 228
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.37 E-value=0.3 Score=38.15 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|+-++++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999543
No 229
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.30 E-value=2.7 Score=38.06 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=53.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-++.+.+.++.. ++.+..++++.+..+..... .+..+|+|+|. .-...+++.++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~v 305 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNV 305 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccCc
Confidence 457999999999999999988764 67888899988765543332 24578999996 12345677888
Q ss_pred cEEEecc
Q 022724 177 KLLVLDE 183 (293)
Q Consensus 177 ~~iViDE 183 (293)
+++|.-+
T Consensus 306 ~~VI~~~ 312 (523)
T 1oyw_A 306 RFVVHFD 312 (523)
T ss_dssp CEEEESS
T ss_pred cEEEEEC
Confidence 8887533
No 230
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=87.29 E-value=4.4 Score=33.64 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++-+.+++++|+|||...
T Consensus 98 ~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SEEEEEECCTTTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446778899999999543
No 231
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.27 E-value=1.4 Score=36.54 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
..++++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999544
No 232
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.22 E-value=0.31 Score=38.29 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|+-++++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677999999999999543
No 233
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.00 E-value=0.29 Score=37.32 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCChhHHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~~ 88 (293)
.+++.++++|++|+|||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999996543
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.86 E-value=0.13 Score=42.60 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=27.9
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhh--cCCcEEEEcCCCChhHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~ 86 (293)
+..+|++++-.+++.+.+.+. +..|.. ..+++..+. -.+.+++.||+|+|||..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~-i~~~~~-~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMA-ILAPVR-NPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHH-HTHHHH-SHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHHHhh-CHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 346789988777777777653 111111 122333321 234599999999999954
No 235
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.82 E-value=0.33 Score=37.10 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~ 88 (293)
++.++++|++|+|||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999996543
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.75 E-value=0.31 Score=38.07 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcCCCChhHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~ 87 (293)
...|+-++++||+|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 457889999999999999643
No 237
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.74 E-value=0.41 Score=38.37 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (293)
.|.-+++.|++|+|||...+-.+.+..... +..++|+.-. .-..++..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc-CCHHHHHHHHHH
Confidence 356799999999999954433333333222 2246666533 224455555443
No 238
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.73 E-value=0.35 Score=41.22 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++.++|+||||+|||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999543
No 239
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.66 E-value=2.4 Score=46.69 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=43.7
Q ss_pred CHHHHHHHHHCCCCCCcHHHH-HHHH---hhhcCCcEEEEcCCCChhHHHHHH--HHHhhhccCCCceeEEEEcCCHHHH
Q 022724 41 KDDLLRGIYQYGFEKPSAIQQ-RAVM---PIIKGRDVIAQAQSGTGKTSMIAL--TVCQTVDTSSREVQALILSPTRELA 114 (293)
Q Consensus 41 ~~~i~~~l~~~~~~~~~~~Q~-~~~~---~i~~~~~~li~~~Tg~GKT~~~~~--~~~~~l~~~~~~~~~lil~P~~~l~ 114 (293)
...+.+.+.+.|+. |.+.+. +++. .+..+..++++||||+|||.++-. -++..+. .......++-|----.
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~--~~~~~~~~iNPKait~ 950 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVD--NIKSEAHVMDPKAITK 950 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTT--TCEEEEEEECTTTSCH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhh--CCCceEEEECCCCCch
Confidence 34566666778876 555554 3333 344567899999999999988642 2222222 1233455666744334
Q ss_pred HHHH
Q 022724 115 TQTE 118 (293)
Q Consensus 115 ~q~~ 118 (293)
.|++
T Consensus 951 ~eLy 954 (3245)
T 3vkg_A 951 DQLF 954 (3245)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 4443
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.38 E-value=0.37 Score=36.52 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++.++++|++|+|||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467899999999999654
No 241
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.32 E-value=0.97 Score=40.88 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
++.+++|.|+||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 4579999999999999654
No 242
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.31 E-value=0.49 Score=40.75 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
.+..++++||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455899999999999943
No 243
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.26 E-value=0.34 Score=37.67 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCChhHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~ 87 (293)
..|.-++++||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778999999999999543
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.14 E-value=1.4 Score=36.77 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChhHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~ 88 (293)
++.++++||+|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5578999999999996543
No 245
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.07 E-value=0.22 Score=43.89 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=33.2
Q ss_pred cccCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
+..+|++.+=-++..+.+.+. -+..|.-++..- +...+.+++.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHH
Confidence 457899997555666666542 122333332221 123478999999999999643
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.01 E-value=0.26 Score=37.89 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=16.6
Q ss_pred hhcCCcEEEEcCCCChhHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~ 86 (293)
+.+|.-+++.||+|+|||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 44677899999999999954
No 247
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=85.95 E-value=1.5 Score=44.06 Aligned_cols=53 Identities=21% Similarity=0.152 Sum_probs=41.1
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccC---------CCceeEEEEcCCHHHHHHHHHHHHHh
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTS---------SREVQALILSPTRELATQTEKVILAI 124 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~---------~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (293)
..+|.|+.|||||.+..--++..+... -...++|+|+=|++-+.++.+++...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 459999999999987666666666432 12247999999999999999988753
No 248
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.91 E-value=0.29 Score=39.66 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=30.8
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhh--cCCcEEEEcCCCChhHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~ 86 (293)
+..+|+++.-.+.....++..-.. . -...++..+. -.+.+++.||+|+|||..
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 446788887666666666543110 0 0112333322 134599999999999954
No 249
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.59 E-value=0.51 Score=37.02 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=22.9
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
.|.-+++.||+|+|||......+. . .+..++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEEC
Confidence 467799999999999955433332 1 2345666653
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=85.59 E-value=0.43 Score=37.06 Aligned_cols=19 Identities=47% Similarity=0.623 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5778899999999999543
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.57 E-value=0.45 Score=37.76 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.0
Q ss_pred hhcCCcEEEEcCCCChhHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~ 86 (293)
+..|+-+.++||+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688899999999999954
No 252
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.56 E-value=1.3 Score=37.09 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.+.++++.||+|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999654
No 253
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.56 E-value=0.43 Score=36.63 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
+++.++++|++|+|||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 254
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.52 E-value=0.41 Score=38.78 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=28.0
Q ss_pred cCcccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 33 TSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 33 ~~f~~~~l~~~i~~~l~~~~--~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
.+|+++.=.+.+.+.+.++- +..|..+... .+...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 46777755555665554420 1112111111 1123468999999999999544
No 255
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.40 E-value=0.4 Score=37.59 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
.|+-+++.||||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456799999999999843
No 256
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.39 E-value=0.46 Score=37.18 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
+|+-++++||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 678899999999999954
No 257
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.20 E-value=0.4 Score=39.80 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=30.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHhhh-cCCcEEEEcCCCChhHHHH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPII-KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q-~~~~~~i~-~~~~~li~~~Tg~GKT~~~ 87 (293)
..+|+++.=.+...+.+.+.- . .+.. .+.+..+. .++.+++.||+|+|||..+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i-~--~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMV-I--LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHT-H--HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHH-H--hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 457888766666666665431 1 0000 00111111 3578999999999999544
No 258
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=85.19 E-value=7.8 Score=34.60 Aligned_cols=75 Identities=8% Similarity=-0.004 Sum_probs=50.1
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCcc
Q 022724 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (293)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~ 177 (293)
.+.++++....-+..+.+.+.. .+.++..++|+.+..+..+.+ ....+|+|+|+..+.. .+++.+++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CCeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 3455555556666666665544 334788888887755443322 3456899999866554 57888999
Q ss_pred EEEecchh
Q 022724 178 LLVLDESD 185 (293)
Q Consensus 178 ~iViDE~h 185 (293)
++|+.+..
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99998876
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.17 E-value=0.48 Score=35.65 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++.+++.||.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999543
No 260
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=85.14 E-value=1.8 Score=43.34 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=58.7
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.+++|+||+++-+..+.+.+++.. .+.++..++|+.+..+..+.+ .+..+|+|+|. . -...+++.++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v-~e~GiDip~v 883 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----I-IETGIDIPTA 883 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----T-TGGGSCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-ceeeecccCC
Confidence 5689999999999999999888763 256788899988765544332 24679999995 2 2345788899
Q ss_pred cEEEecchhh
Q 022724 177 KLLVLDESDE 186 (293)
Q Consensus 177 ~~iViDE~h~ 186 (293)
+++|+..++.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999877754
No 261
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.06 E-value=0.4 Score=40.44 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++-++|.||||+|||...
T Consensus 3 ~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCcCCHHHHH
Confidence 345788999999999543
No 262
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=84.96 E-value=0.98 Score=34.72 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=23.2
Q ss_pred EEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 022724 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (293)
++|.|++|||||.-+. -+ ... +..++|+......-.++.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~-~l----a~~--~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-AL----IGD--APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHH-HH----HCS--CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHH-HH----Hhc--CCCeEEEecCCCCCHHHHHHHH
Confidence 6899999999994332 22 122 3357888875544444444443
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.75 E-value=0.49 Score=36.63 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChhHHH
Q 022724 71 RDVIAQAQSGTGKTSM 86 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~ 86 (293)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999953
No 264
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.65 E-value=0.45 Score=38.62 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=28.9
Q ss_pred ccCcccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 32 ITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~~--~~~~~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
...|+++.-.+.+.+.+.+.- +..+..++.. .....+.+++.||+|+|||...
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 457888866666666654320 0111100000 0112457999999999999543
No 265
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.64 E-value=2 Score=37.01 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999654
No 266
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.62 E-value=0.45 Score=35.62 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+.++++|++|||||...
T Consensus 2 ~~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFA 18 (179)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999643
No 267
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.50 E-value=0.52 Score=37.16 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHhhhcC----CcEEEEcCCCChhHHHHHHHHHhh
Q 022724 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQT 94 (293)
Q Consensus 42 ~~i~~~l~~~~~~~~~~~Q~~~~~~i~~~----~~~li~~~Tg~GKT~~~~~~~~~~ 94 (293)
..|.+.|+--|+. +... ...+..+.++ +.+++.||.|+|||..+ ..+...
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHH
Confidence 3556665543433 3333 3444555544 36999999999999544 344443
No 268
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=84.35 E-value=2 Score=35.20 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCCCCcHHHHH-HHHhhhcCC-----cEEEEcCCCChhHHHHH
Q 022724 43 DLLRGIYQYGFEKPSAIQQR-AVMPIIKGR-----DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 43 ~i~~~l~~~~~~~~~~~Q~~-~~~~i~~~~-----~~li~~~Tg~GKT~~~~ 88 (293)
.+.+-|+-.||. +.+-. ++..+++++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 678888777766 44432 344455442 59999999999996654
No 269
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.27 E-value=0.47 Score=41.08 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.5
Q ss_pred hhcCCcEEEEcCCCChhHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~ 86 (293)
+..|..++++||||+|||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34677899999999999954
No 270
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.14 E-value=0.45 Score=40.78 Aligned_cols=18 Identities=50% Similarity=0.815 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 358999999999999654
No 271
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.13 E-value=0.55 Score=36.07 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=13.5
Q ss_pred CcEEEEcCCCChhHHH
Q 022724 71 RDVIAQAQSGTGKTSM 86 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~ 86 (293)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999954
No 272
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.94 E-value=0.59 Score=47.50 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCccEEEecchhhhhccccHHHHHHHHhhCCCC
Q 022724 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~ 206 (293)
+++-+.+|+||+-.-+|..-...+...+..+.++
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~ 603 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKG 603 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTT
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCC
Confidence 3567899999998888776566666655554333
No 273
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.90 E-value=0.52 Score=39.68 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.2
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-++|+||||+|||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999543
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.88 E-value=0.57 Score=36.41 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|+.+++.||.|+|||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999543
No 275
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=83.76 E-value=0.57 Score=36.66 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=16.2
Q ss_pred hhhcCCcEEEEcCCCChhHHH
Q 022724 66 PIIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 66 ~i~~~~~~li~~~Tg~GKT~~ 86 (293)
.+..|.-+.+.||+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 567788999999999999954
No 276
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.69 E-value=0.48 Score=35.90 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|.-+.++||+|+|||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 5677899999999999543
No 277
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.67 E-value=0.51 Score=38.42 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.3
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.++++||+|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999544
No 278
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=83.66 E-value=18 Score=33.82 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=57.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH---h-cCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-+..+.+.+... ++++..++++.+..+....+ . ...+|+|+|. .+ ...+++.++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCC
Confidence 458999999999999998877764 56788888887655554432 2 4578999984 22 346788899
Q ss_pred cEEEecchhhh
Q 022724 177 KLLVLDESDEM 187 (293)
Q Consensus 177 ~~iViDE~h~~ 187 (293)
+++|+=|++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99998888654
No 279
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=83.62 E-value=0.58 Score=35.74 Aligned_cols=19 Identities=26% Similarity=0.414 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
+++.+++.|+.|+|||...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567999999999999643
No 280
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.18 E-value=0.46 Score=39.14 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=31.5
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHhhh--cCCcEEEEcCCCChhHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~ 86 (293)
+..+|+++.-.+.+...++..-.. . -...++..+. -.+.+++.||+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 456788887777776666543111 0 0112233321 134599999999999954
No 281
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=83.16 E-value=3 Score=36.84 Aligned_cols=68 Identities=4% Similarity=0.000 Sum_probs=45.8
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~i 179 (293)
+.+++|.||+++-+..+.+.++.. ++++..++|.. ....+.... ...+|+|+|. .+ ...+++. ++++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----IA-EMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEESS-----ST-TCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEECC-----hh-heeeccC-ceEE
Confidence 458999999999999999988764 57788888843 222233332 4578999995 22 3356777 8887
Q ss_pred E
Q 022724 180 V 180 (293)
Q Consensus 180 V 180 (293)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 282
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.93 E-value=0.36 Score=42.93 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=30.1
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHh-hhcCCcEEEEcCCCChhHHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQ-RAVMP-IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~-~~~~~-i~~~~~~li~~~Tg~GKT~~~ 87 (293)
+..+|+++.=...+.+.+.+.- . .|... +.+.. ....+.+++.||+|+|||..+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v-~--~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAV-I--LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-T--HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-H--HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3456777765666666665421 0 01100 00001 123478999999999999654
No 283
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=82.79 E-value=0.53 Score=35.54 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|..++++|+.|+|||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999643
No 284
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.75 E-value=0.91 Score=35.51 Aligned_cols=40 Identities=8% Similarity=0.234 Sum_probs=23.4
Q ss_pred ccEEEecchhhhhcc---cc--HHHHHHHHhhCCCCccEEEEEee
Q 022724 176 IKLLVLDESDEMLSR---GF--KDQIYDVYRYLPPDLQVVLISAT 215 (293)
Q Consensus 176 l~~iViDE~h~~~~~---~~--~~~~~~i~~~l~~~~q~v~~SAt 215 (293)
-.+|||||||.+... .. ...+..+........++|+++..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 568999999998432 11 12222222222345688888777
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=82.26 E-value=0.72 Score=36.67 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=16.0
Q ss_pred hhcCCcEEEEcCCCChhHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~ 86 (293)
...|+-+++.||+|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45688899999999999954
No 286
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.15 E-value=0.59 Score=38.95 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999543
No 287
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=82.10 E-value=1.9 Score=39.49 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHhhhcc-CCCceeEEEEcCC
Q 022724 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPT 110 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~~~~~~~l~~-~~~~~~~lil~P~ 110 (293)
..+++|.|.||||||.+.-..++..+.. .+...+.+++=|-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4689999999999996544334333332 2233455555454
No 288
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.03 E-value=0.95 Score=38.19 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=22.2
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEEe
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~SA 214 (293)
..+.+|++..|.+. .. ..+...++.+.+...++..|-
T Consensus 151 ~ad~ill~k~dl~d-e~--~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 151 YADRILLTKTDVAG-EA--EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp TCSEEEEECTTTCS-CT--HHHHHHHHHHCSSSCEEECCS
T ss_pred hCCEEEEECcccCC-HH--HHHHHHHHHhCCCCeEEEecc
Confidence 35778888888763 22 455555555555566665543
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.94 E-value=0.68 Score=34.64 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=13.5
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.|+.|+|||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 290
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.93 E-value=6.8 Score=35.43 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=29.3
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
+..|.-+++.||+|+|||..... ++..... .+.+++++++... ..++...+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~-l~g~~~~--~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSR-FVENACA--NKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHH-HHHHHHT--TTCCEEEEESSSC-HHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH-HHHHHHh--CCCCEEEEEEeCC-HHHHHHHH
Confidence 44667899999999999954332 2222222 2445777765432 23444433
No 291
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=81.91 E-value=0.51 Score=35.99 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|..++++|+.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999654
No 292
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=81.84 E-value=2.6 Score=37.13 Aligned_cols=67 Identities=4% Similarity=-0.058 Sum_probs=45.8
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~i 179 (293)
+.+++|+||++.-++.+.+.+++. +.++..++|+... ..+... ....+|+|+|. .+.. .+++. ...+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT~-----v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFE-SEYPKCKSEKWDFVITTD-----ISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHH-HHTTHHHHSCCSEEEECG-----GGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHH-HHHHhhcCCCCeEEEECc-----hHHc-CcccC-CcEE
Confidence 347999999999999999988765 6788888887322 222222 34679999995 3333 45565 5554
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.79 E-value=0.69 Score=34.90 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=13.4
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-++++|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999643
No 294
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=81.76 E-value=0.72 Score=39.60 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
.+.+++.||+|+|||..+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999654
No 295
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.49 E-value=2.8 Score=35.37 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=13.2
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-+.+.||+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999543
No 296
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=81.46 E-value=0.65 Score=36.08 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|.-+.+.||+|+|||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5678999999999999543
No 297
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.33 E-value=0.72 Score=41.09 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCChhHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~ 88 (293)
.++++++.||+|+|||..+-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 34689999999999996543
No 298
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=80.94 E-value=1.5 Score=38.93 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=25.1
Q ss_pred cCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
.|.-++|.|++|+|||...+-.+.+.... +.+++|++-
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 45679999999999995444333333333 446777764
No 299
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.89 E-value=0.7 Score=38.48 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 37999999999999654
No 300
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=80.73 E-value=0.96 Score=38.28 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.7
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.++++||||+|||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999544
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.60 E-value=0.64 Score=37.04 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=12.7
Q ss_pred hhcCCcEEEEcCCCChhHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~ 86 (293)
+..|+-+.+.||+|+|||..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44678899999999999954
No 302
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.26 E-value=0.82 Score=39.25 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999654
No 303
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.21 E-value=8 Score=36.88 Aligned_cols=75 Identities=17% Similarity=0.113 Sum_probs=53.6
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhh-------ccCCceEEEEECCcchHHHHHHHhc---------CCcEEEeChHHHHH
Q 022724 101 EVQALILSPTRELATQTEKVILAIG-------DFINIQAHACVGGKSVGEDIRKLEH---------GVHVVSGTPGRVCD 164 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ilV~Tp~~l~~ 164 (293)
+.++||.+|++.-+..+.+.+.... ...++.+..++++.+..++.+.+.. ...|+|+|. .+.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-iae- 380 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-IAE- 380 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-HHH-
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-HHH-
Confidence 4589999999999999998887522 2357889999999887666544432 347999995 222
Q ss_pred HHhcCCCCCCCccEEEe
Q 022724 165 MIKRKTLRTRAIKLLVL 181 (293)
Q Consensus 165 ~l~~~~~~~~~l~~iVi 181 (293)
..+++..+.+||-
T Consensus 381 ----~GidIp~v~~VId 393 (773)
T 2xau_A 381 ----TSLTIDGIVYVVD 393 (773)
T ss_dssp ----HTCCCTTEEEEEE
T ss_pred ----hCcCcCCeEEEEe
Confidence 2567778887663
No 304
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=80.07 E-value=4.2 Score=36.55 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=53.1
Q ss_pred ChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEC--------CcchHHHHHH---Hh
Q 022724 81 TGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG--------GKSVGEDIRK---LE 149 (293)
Q Consensus 81 ~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~ 149 (293)
++|-.. +.-++........+.++||.|+++.-+..+.+.++......++.+..++| +.+..++.+. ..
T Consensus 370 ~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKLRD-LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHHHH-HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHHHH-HHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 455532 33334333222334689999999999999999998765333344444443 4443333322 22
Q ss_pred --cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecc
Q 022724 150 --HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (293)
Q Consensus 150 --~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE 183 (293)
...+|+|+|. . -...+++.+++++|.=+
T Consensus 449 ~~g~~~vLvaT~-----~-~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 449 ASGDNNILIATS-----V-ADEGIDIAECNLVILYE 478 (555)
T ss_dssp ---CCSEEEECC-----C-TTCCEETTSCSEEEEES
T ss_pred cCCCeeEEEEcc-----h-hhcCCccccCCEEEEeC
Confidence 3468999995 2 23457788888887643
No 305
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=79.89 E-value=2.9 Score=36.45 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhhh---cCCcEEEEcCCCChhHHHH
Q 022724 56 PSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 56 ~~~~Q~~~~~~i~---~~~~~li~~~Tg~GKT~~~ 87 (293)
|-..-..+++.+. +|+.+.+.||+|+|||...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 4555566777654 7899999999999999554
No 306
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=79.84 E-value=1.1 Score=36.41 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|+.+++.|++|+|||...
T Consensus 47 ~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3899999999999999654
No 307
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=79.82 E-value=0.99 Score=34.87 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|+.++++|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4678999999999999654
No 308
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=79.77 E-value=1.4 Score=37.95 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=16.6
Q ss_pred HhhhcCCc--EEEEcCCCChhHHHH
Q 022724 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 65 ~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
+.+++|.| ++.-|+||||||...
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEe
Confidence 33457776 566699999999653
No 309
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=79.75 E-value=0.48 Score=36.99 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=18.1
Q ss_pred HHhhhcCCcEEEEcCCCChhHHHH
Q 022724 64 VMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 64 ~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
++.+..+.-+.+.|++|+|||...
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHH
Confidence 344556677899999999999543
No 310
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=79.74 E-value=0.75 Score=35.18 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++.++++|+.|+|||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999654
No 311
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.66 E-value=0.44 Score=38.89 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 457999999999999554
No 312
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=79.56 E-value=0.94 Score=34.72 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCChhHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~ 87 (293)
.++..++++|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35678999999999999654
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.43 E-value=0.98 Score=33.81 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.2
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
+++++.|+.|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 579999999999996543
No 314
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.43 E-value=1.1 Score=38.19 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.6
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-++|+||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5889999999999544
No 315
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.39 E-value=0.97 Score=34.56 Aligned_cols=15 Identities=33% Similarity=0.725 Sum_probs=12.9
Q ss_pred cEEEEcCCCChhHHH
Q 022724 72 DVIAQAQSGTGKTSM 86 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~ 86 (293)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999954
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=79.37 E-value=0.75 Score=37.00 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~ 204 (293)
.+.+++++||.-.-+|......+..++..+.
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 5678899999988777766666666666653
No 317
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=79.14 E-value=0.69 Score=35.46 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.-+++.||+|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35789999999999543
No 318
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=79.10 E-value=2.8 Score=31.91 Aligned_cols=15 Identities=47% Similarity=0.410 Sum_probs=12.7
Q ss_pred CcEEEEcCCCChhHH
Q 022724 71 RDVIAQAQSGTGKTS 85 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~ 85 (293)
+-+++.|++|+|||.
T Consensus 7 ~~i~i~G~sGsGKTT 21 (174)
T 1np6_A 7 PLLAFAAWSGTGKTT 21 (174)
T ss_dssp CEEEEECCTTSCHHH
T ss_pred eEEEEEeCCCCCHHH
Confidence 357899999999994
No 319
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=78.97 E-value=1.1 Score=33.88 Aligned_cols=17 Identities=18% Similarity=0.517 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+.+++.|+.|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999654
No 320
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=78.96 E-value=1.6 Score=36.93 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=16.8
Q ss_pred HhhhcCCc--EEEEcCCCChhHHHH
Q 022724 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 65 ~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
..+++|.| ++.-|+||||||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCeEEEEEECCCCCCCceEe
Confidence 34457876 566799999999653
No 321
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=78.85 E-value=1.4 Score=36.30 Aligned_cols=37 Identities=8% Similarity=-0.020 Sum_probs=30.4
Q ss_pred cccHHHHHHHHHhhC--CCCcEEEEcccchhHHHHHhhC
Q 022724 256 EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVLLLVLQF 292 (293)
Q Consensus 256 ~~~k~~~l~~l~~~~--~~~~~iIF~~s~~~a~~l~~~L 292 (293)
...|...+.++++.. .+.++||||+++..++.+...|
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L 132 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNII 132 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHH
Confidence 345999998888765 6789999999999999887764
No 322
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=78.75 E-value=1 Score=33.27 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.4
Q ss_pred CcEEEEcCCCChhHHH
Q 022724 71 RDVIAQAQSGTGKTSM 86 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~ 86 (293)
.-.+|.||+|+|||..
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3578999999999955
No 323
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=78.68 E-value=0.88 Score=35.59 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
.|.-+.|.||+|+|||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999943
No 324
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.59 E-value=0.62 Score=39.52 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
...++++.||+|+|||...
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999544
No 325
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=78.57 E-value=0.95 Score=34.31 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
+|..++++|+.|+|||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567899999999999643
No 326
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=78.45 E-value=0.88 Score=37.80 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.-++++||+|+|||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999543
No 327
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=78.40 E-value=0.93 Score=34.63 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+..++++|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999654
No 328
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=78.39 E-value=1.1 Score=34.79 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+.++++|+.|+|||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47999999999999654
No 329
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=78.36 E-value=1.5 Score=37.39 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=21.1
Q ss_pred CcHHHHHHHH--------hhhcCCc--EEEEcCCCChhHHHH
Q 022724 56 PSAIQQRAVM--------PIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 56 ~~~~Q~~~~~--------~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
+..-|.+++. .+++|.| ++.-|+||||||...
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4445555553 3456776 566699999999653
No 330
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=78.09 E-value=1.3 Score=34.69 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=20.9
Q ss_pred cHHHHHHHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 57 ~~~Q~~~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
++.++.. ..+..|+.++++|+.|+|||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 3444444 33456778999999999999543
No 331
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=77.99 E-value=1.2 Score=35.04 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.+..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999654
No 332
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.98 E-value=3.6 Score=37.96 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHhhhcCCcEEEEcCCCChhHHHH
Q 022724 63 AVMPIIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 63 ~~~~i~~~~~~li~~~Tg~GKT~~~ 87 (293)
+-..+..|..+++.||+|+|||..+
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHH
Confidence 3344567899999999999999544
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=77.92 E-value=1.1 Score=35.53 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.++.++++|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3567999999999999643
No 334
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=77.89 E-value=1.5 Score=39.24 Aligned_cols=19 Identities=21% Similarity=0.421 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChhHHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~~ 88 (293)
..++++.||+|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999996543
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=77.86 E-value=1.3 Score=33.73 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+.++++|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999654
No 336
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=77.85 E-value=1.8 Score=37.01 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=18.8
Q ss_pred HHHhhhcCCc--EEEEcCCCChhHHHH
Q 022724 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 63 ~~~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+..+++|.| ++.-|+||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4556678887 456699999999664
No 337
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=77.69 E-value=0.94 Score=35.33 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
.|.-+.+.||+|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 345688999999999954
No 338
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=77.68 E-value=1.9 Score=36.83 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=18.5
Q ss_pred HHHhhhcCCc--EEEEcCCCChhHHHH
Q 022724 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 63 ~~~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+..+++|.| ++.-|+||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4455667876 566699999999654
No 339
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=77.66 E-value=1.4 Score=37.03 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCChhHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~ 86 (293)
..|+-+.|+||+|+|||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3688899999999999943
No 340
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=77.51 E-value=2.5 Score=36.49 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=45.1
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH---h-cCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.++++.-+..+.+.+.. .++.+..++|+.+..+....+ . ...+|+|+|. . -...+++.++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~v 349 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHA----RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----L-LARGIDVQQV 349 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHT----TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----S-CC--CCGGGC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHh----cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-cccCCCccCC
Confidence 35799999999999998887764 367788888887765544333 2 3457999995 1 2235667777
Q ss_pred cEEEec
Q 022724 177 KLLVLD 182 (293)
Q Consensus 177 ~~iViD 182 (293)
+++|.-
T Consensus 350 ~~Vi~~ 355 (414)
T 3eiq_A 350 SLVINY 355 (414)
T ss_dssp SCEEES
T ss_pred CEEEEe
Confidence 877653
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=77.51 E-value=1.3 Score=33.20 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+.+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999654
No 342
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=77.37 E-value=1.2 Score=34.95 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=13.6
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.||.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 343
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=77.21 E-value=1.1 Score=39.22 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=13.2
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-++|.||||+|||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4788999999999543
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=77.21 E-value=1.3 Score=34.19 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+..++++|+.|+|||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356999999999999654
No 345
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=77.19 E-value=1.2 Score=35.01 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+..+.+.||+|||||...
T Consensus 5 ~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC 22 (227)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356889999999999544
No 346
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=77.15 E-value=1.8 Score=37.84 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=16.3
Q ss_pred hhhcCCc--EEEEcCCCChhHHHH
Q 022724 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 66 ~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+++|.| ++.-|+||||||...
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHhcCCceeEEeecCCCCCCCeEe
Confidence 4457776 566699999999654
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=77.11 E-value=3 Score=31.62 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=16.4
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhcc
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDT 97 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~ 97 (293)
-+.+.|++|+|||.. +..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhHh
Confidence 477899999999953 2334444433
No 348
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=77.09 E-value=2 Score=36.74 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=16.3
Q ss_pred hhhcCCc--EEEEcCCCChhHHHH
Q 022724 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 66 ~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+++|.| ++.-|+||||||...
T Consensus 78 ~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 78 AFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCeeEEEecccCCCceEee
Confidence 3457876 566699999999653
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=77.05 E-value=1.2 Score=35.21 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
.+.+++.|+.|+|||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467999999999999654
No 350
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=77.03 E-value=1.8 Score=37.78 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=18.6
Q ss_pred HHHhhhcCCc--EEEEcCCCChhHHHH
Q 022724 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 63 ~~~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+..+++|.| ++.-|+||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4455668877 456699999999664
No 351
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=76.96 E-value=2 Score=36.78 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=21.3
Q ss_pred CcHHHHHHHH--------hhhcCCc--EEEEcCCCChhHHHH
Q 022724 56 PSAIQQRAVM--------PIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 56 ~~~~Q~~~~~--------~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
+..-|.+++. .+++|.| ++.-|+||||||...
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4445655553 3457776 566699999999653
No 352
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=76.94 E-value=2 Score=37.03 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=16.2
Q ss_pred hhhcCCc--EEEEcCCCChhHHHH
Q 022724 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 66 ~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+++|.| ++.-|+||||||...
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceEEEeecCCCCCCceEE
Confidence 3457776 566799999999653
No 353
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=76.94 E-value=2 Score=36.44 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=18.5
Q ss_pred HHHhhhcCCc--EEEEcCCCChhHHHH
Q 022724 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 63 ~~~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+..+++|.| ++.-|+||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4455678876 566799999999653
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=76.90 E-value=1.1 Score=34.11 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.+..++++|+.|+|||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999654
No 355
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=76.83 E-value=1.2 Score=34.15 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.++.++++|+.|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 356
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=76.82 E-value=2 Score=37.03 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=16.6
Q ss_pred HhhhcCCc--EEEEcCCCChhHHHH
Q 022724 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 65 ~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
..+++|.| ++..|+||||||...
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEe
Confidence 34457876 566699999999553
No 357
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=76.78 E-value=1.9 Score=37.25 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=16.2
Q ss_pred hhhcCCc--EEEEcCCCChhHHHH
Q 022724 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 66 ~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+++|.| ++.-|+||||||...
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 3457876 566699999999653
No 358
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=76.78 E-value=1.2 Score=34.83 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.6
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.||.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 359
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=76.78 E-value=1.9 Score=36.99 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=16.2
Q ss_pred hhhcCCc--EEEEcCCCChhHHHH
Q 022724 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 66 ~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+++|.| ++.-|+||+|||...
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 3457776 566799999999653
No 360
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=76.71 E-value=1.9 Score=36.93 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=16.9
Q ss_pred HhhhcCCc--EEEEcCCCChhHHHH
Q 022724 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 65 ~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
+.+++|.| ++.-|+||||||...
T Consensus 86 ~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 86 QNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHhCCceeEEEeeCCCCCCCceEE
Confidence 44557876 466699999999653
No 361
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=76.69 E-value=1.1 Score=38.51 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=13.6
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-.+|+||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999654
No 362
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=76.61 E-value=6.8 Score=36.72 Aligned_cols=68 Identities=4% Similarity=-0.009 Sum_probs=46.7
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~i 179 (293)
+.++||.||+++-++.+.+.++.. ++++..++|.. ....++... ...+|+|+|. .+ ...+++. ++++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTd-----v~-e~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----IS-EMGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECG-----GG-GTTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEECc-----hh-hcceeeC-CcEE
Confidence 458999999999999988877653 67888888842 222222332 4568999995 22 2346677 7776
Q ss_pred E
Q 022724 180 V 180 (293)
Q Consensus 180 V 180 (293)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 363
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.56 E-value=2.7 Score=33.52 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=17.2
Q ss_pred CC-cEEEEcCCCChhHHHHHHHHH
Q 022724 70 GR-DVIAQAQSGTGKTSMIALTVC 92 (293)
Q Consensus 70 ~~-~~li~~~Tg~GKT~~~~~~~~ 92 (293)
|+ ++++.++.|+|||...+--+.
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH
Confidence 44 689999999999976544333
No 364
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=76.51 E-value=1.9 Score=36.83 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=16.7
Q ss_pred HhhhcCCc--EEEEcCCCChhHHHH
Q 022724 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 65 ~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
..+++|.| ++.-|+||+|||...
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHcCCccceeeecCCCCCCCeEE
Confidence 34457776 566799999999653
No 365
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=76.50 E-value=1.6 Score=36.94 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.++++.||+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999543
No 366
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=76.46 E-value=2 Score=36.86 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcHHHHHHHH--------hhhcCCc--EEEEcCCCChhHHHH
Q 022724 56 PSAIQQRAVM--------PIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 56 ~~~~Q~~~~~--------~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
+..-|.+++. .+++|.| ++.-|+||||||...
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4445666554 3446776 566699999999653
No 367
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=76.37 E-value=20 Score=31.85 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=19.5
Q ss_pred HHHh---hhcCCcEEEEcCCCChhHHHH
Q 022724 63 AVMP---IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 63 ~~~~---i~~~~~~li~~~Tg~GKT~~~ 87 (293)
+++. +.+|+..++.||.|+|||...
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHH
Confidence 4544 447889999999999999543
No 368
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=76.36 E-value=2 Score=36.93 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=16.5
Q ss_pred HhhhcCCc--EEEEcCCCChhHHHH
Q 022724 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 65 ~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
+.+++|.| ++.-|+||+|||...
T Consensus 97 ~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 97 SQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCceEEEEECCCCCCCceEe
Confidence 34457876 455699999999653
No 369
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.30 E-value=1.1 Score=35.20 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCChhHHHH
Q 022724 68 IKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~~~ 87 (293)
..|.-+.+.||+|+|||...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35678999999999999543
No 370
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=76.14 E-value=1.9 Score=36.99 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=16.7
Q ss_pred HhhhcCCc--EEEEcCCCChhHHHH
Q 022724 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 65 ~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
..+++|.| ++.-|+||||||...
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCCceEE
Confidence 34557876 566699999999653
No 371
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=76.02 E-value=1.2 Score=35.80 Aligned_cols=27 Identities=7% Similarity=0.231 Sum_probs=19.8
Q ss_pred CCccEEEecchhhhhccccHHHHHHHH
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVY 200 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~ 200 (293)
.+.+++++||.-.-+|......+..++
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 456899999998877776566666555
No 372
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=75.94 E-value=1.7 Score=32.82 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=13.5
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-.+|+||+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 6789999999999543
No 373
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=75.90 E-value=1.2 Score=34.47 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
+++-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3567899999999999654
No 374
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=75.88 E-value=1.3 Score=34.32 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.++-++++|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999654
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=75.88 E-value=1.4 Score=35.61 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|..+.+.||+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667999999999999543
No 376
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=75.86 E-value=1.1 Score=33.85 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=11.2
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
+++.+++.|+.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999654
No 377
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=75.83 E-value=1.4 Score=35.13 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.+..+++.|+.|+|||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3468999999999999654
No 378
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.74 E-value=1.4 Score=32.75 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=13.6
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999654
No 379
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=75.66 E-value=1.1 Score=35.82 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=24.5
Q ss_pred CCccEEEecchhhhhccccHHHHHHH-HhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDV-YRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i-~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+... +..+... ..++++
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~tvi~v 186 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILV 186 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTT-SEEEEE
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCC-CEEEEE
Confidence 56789999999887777666666553 3333333 344443
No 380
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=75.65 E-value=7 Score=32.39 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=48.9
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH----hcCCcEEEeChHHHHHHHhcCCCCCCC
Q 022724 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~l~~~~~~~~~ 175 (293)
.+.++||.+++++-+..+.+.++ ++..++|+.+..+..+.+ ....+|+|+|. .+ ...+++.+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gid~~~ 284 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VA-SRGLDIPL 284 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HH-HTTCCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cc-ccCCCccC
Confidence 34579999999998887776443 456778887665544333 24568999995 22 23577888
Q ss_pred ccEEEecch
Q 022724 176 IKLLVLDES 184 (293)
Q Consensus 176 l~~iViDE~ 184 (293)
++++|.-+.
T Consensus 285 ~~~Vi~~~~ 293 (337)
T 2z0m_A 285 VEKVINFDA 293 (337)
T ss_dssp BSEEEESSC
T ss_pred CCEEEEecC
Confidence 998886443
No 381
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.61 E-value=1.4 Score=34.26 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
+++.++++|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 382
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=75.55 E-value=1 Score=35.85 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=24.7
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
.+.+++++||.-.-+|......+..++..+......+++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~ 195 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVM 195 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 567889999988777776666666665555322334444
No 383
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=75.31 E-value=1.4 Score=39.01 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
.+++++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999654
No 384
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=75.30 E-value=4.6 Score=37.77 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=44.1
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEC--------CcchHHHHHH---Hh--cCCcEEEeChHHHHHHH
Q 022724 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVG--------GKSVGEDIRK---LE--HGVHVVSGTPGRVCDMI 166 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~--~~~~ilV~Tp~~l~~~l 166 (293)
.+.++||.++++.-+..+.+.++......++++..++| +.+..++.+. .. ...+|+|+|. +
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------V 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------h
Confidence 45689999999999999999888754333366666644 5444333322 22 3468999994 2
Q ss_pred hcCCCCCCCccEEEecch
Q 022724 167 KRKTLRTRAIKLLVLDES 184 (293)
Q Consensus 167 ~~~~~~~~~l~~iViDE~ 184 (293)
-...+++.+++++|.-+.
T Consensus 471 ~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp SCCC---CCCSEEEEESC
T ss_pred hhcCCcCccCCEEEEeCC
Confidence 234577888888886444
No 385
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.28 E-value=1.6 Score=36.62 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=25.3
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
.+-+++|+||.-.-+|......+...+..+.... .+++
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~-Tvi~ 244 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCANR-TTIV 244 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTS-EEEE
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCC-EEEE
Confidence 4568899999987777766666666666554443 4444
No 386
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=75.15 E-value=2.1 Score=37.01 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=20.6
Q ss_pred CcHHHHHHHH--------hhhcCCc--EEEEcCCCChhHHH
Q 022724 56 PSAIQQRAVM--------PIIKGRD--VIAQAQSGTGKTSM 86 (293)
Q Consensus 56 ~~~~Q~~~~~--------~i~~~~~--~li~~~Tg~GKT~~ 86 (293)
|..-|.+++. .+++|.| ++.-|+||||||..
T Consensus 77 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCccee
Confidence 3444655554 3456776 56669999999955
No 387
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=75.14 E-value=8.3 Score=34.05 Aligned_cols=67 Identities=9% Similarity=-0.000 Sum_probs=46.4
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcCCCCCCCccEEE
Q 022724 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (293)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iV 180 (293)
.++||.+|++.-++++.+.+++. ++++..+++.... ...+.. ....+|+|+|. .+ ...+++.. .+||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEECC-----HH-HhCcCCCC-CEEE
Confidence 47999999999999988877653 6778888876543 222233 24568999995 33 33566777 6665
No 388
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=75.12 E-value=2.3 Score=36.91 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=16.4
Q ss_pred hhhcCCc--EEEEcCCCChhHHHH
Q 022724 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 66 ~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+++|.| ++.-|+||||||...
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHhcCCceEEEEecCCCCCCCeEe
Confidence 3557776 566699999999654
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=75.06 E-value=2.2 Score=32.91 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCCccEEEecchhhhh--ccccHHHHHHHHhhCCCCccEEEEEeecC
Q 022724 173 TRAIKLLVLDESDEML--SRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (293)
Q Consensus 173 ~~~l~~iViDE~h~~~--~~~~~~~~~~i~~~l~~~~q~v~~SAt~~ 217 (293)
..+.+++|+||+..+. +..+...+..++.. ...+|+-+.|++
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 4667899999987663 33455555555553 333555566653
No 390
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=75.03 E-value=1.9 Score=37.18 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=18.3
Q ss_pred HHHhhhcCCc--EEEEcCCCChhHHHH
Q 022724 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 63 ~~~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+..+++|.| ++.-|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4455668876 555699999999653
No 391
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.02 E-value=1 Score=43.17 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=34.1
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHh--hhcCCcEEEEcCCCChhHHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~--i~~~~~~li~~~Tg~GKT~~~ 87 (293)
+..+|++.+-..++.+.+.+. +..|..+ .+.+.. +...+.+++.||.|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~-v~~p~~~-p~~f~~~g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQEL-VQYPVEH-PDKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTT-TTTTTTC-SGGGSSSCCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH-HHhhhhC-HHHHHhcCCCCCceEEEecCCCCCchHHH
Confidence 345788888888888888764 2212110 011111 122468999999999999554
No 392
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=74.93 E-value=1.4 Score=34.81 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCChhHH
Q 022724 68 IKGRDVIAQAQSGTGKTS 85 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~ 85 (293)
..|.-+.+.||+|+|||.
T Consensus 33 ~~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp ETTCCEEEECCTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 367889999999999994
No 393
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=74.84 E-value=1.4 Score=33.58 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.4
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.|+.|+|||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999543
No 394
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=74.79 E-value=3 Score=34.89 Aligned_cols=17 Identities=41% Similarity=0.646 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChhHHH
Q 022724 70 GRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~ 86 (293)
|.-+.++||+|+|||..
T Consensus 102 g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45788999999999954
No 395
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.78 E-value=2.1 Score=37.49 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=18.4
Q ss_pred HHHhhhcCCc--EEEEcCCCChhHHHH
Q 022724 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 63 ~~~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
.+..+++|.| ++.-|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4555668876 566699999999653
No 396
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=74.57 E-value=1.5 Score=33.99 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.4
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999543
No 397
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=74.55 E-value=1.5 Score=33.64 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=13.4
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.|+.|+|||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999543
No 398
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.50 E-value=2.9 Score=34.98 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+-++++||+|+|||...
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35789999999999543
No 399
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=74.35 E-value=1.2 Score=36.28 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=25.3
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
.+.+++++||.-.-+|......+..++..+......+++
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 208 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 208 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 567889999998877776666666666655322234444
No 400
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=74.18 E-value=2.1 Score=37.21 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred CcHHHHHHHHh--------hhcCCc--EEEEcCCCChhHHHH
Q 022724 56 PSAIQQRAVMP--------IIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 56 ~~~~Q~~~~~~--------i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
+..-|.+++.. +++|.| ++.-|+||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 45567766653 446776 556699999999653
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=74.13 E-value=1.6 Score=34.26 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467899999999999654
No 402
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=74.13 E-value=13 Score=33.36 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=21.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcC
Q 022724 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P 109 (293)
.++++|++|+|||....--+ ..+... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~~--G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQRK--GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHHT--TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHhC--CCeEEEEec
Confidence 58889999999996543222 222222 345666654
No 403
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=73.98 E-value=1.3 Score=36.22 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~ 204 (293)
.+.+++++||.-.-+|......+..++..+.
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 5678999999988777766666666665553
No 404
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=73.97 E-value=1.4 Score=35.63 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=26.0
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+... ..++++
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g-~tviiv 200 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKICKG-RTVIII 200 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTT-SEEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCC-CEEEEE
Confidence 567899999998877776666666666655333 344443
No 405
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=73.96 E-value=1.9 Score=39.76 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=13.3
Q ss_pred cEEEEcCCCChhHH
Q 022724 72 DVIAQAQSGTGKTS 85 (293)
Q Consensus 72 ~~li~~~Tg~GKT~ 85 (293)
++++.||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999994
No 406
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=73.88 E-value=1.5 Score=33.39 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+.++++|+.|||||...
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999654
No 407
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=73.82 E-value=2.6 Score=37.32 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=15.9
Q ss_pred hhcCCc--EEEEcCCCChhHHHH
Q 022724 67 IIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 67 i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
+++|.| ++.-|+||+|||...
T Consensus 132 ~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 132 NFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCCceEEEEeCCCCCCCCEEe
Confidence 457876 566699999999654
No 408
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=73.78 E-value=1.4 Score=36.29 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
.+.+++++||.-.-+|......+..++..+
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 567889999998777766566666666555
No 409
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=73.77 E-value=1.6 Score=33.89 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.3
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+.+.||.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 410
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=73.57 E-value=1.8 Score=34.69 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
++..++++||.|+|||..
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356799999999999954
No 411
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=73.51 E-value=41 Score=28.44 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.6
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.++++|++|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999543
No 412
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=73.45 E-value=1.2 Score=33.34 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=15.2
Q ss_pred hcCCcEEEEcCCCChhHH
Q 022724 68 IKGRDVIAQAQSGTGKTS 85 (293)
Q Consensus 68 ~~~~~~li~~~Tg~GKT~ 85 (293)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 356678999999999994
No 413
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=73.44 E-value=1.5 Score=35.76 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=26.3
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+... ..++++
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~-~tviiv 210 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIII 210 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTT-SEEEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 446889999998877776666666666666443 445443
No 414
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=73.34 E-value=1.6 Score=39.15 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=30.0
Q ss_pred ccCcccCCCCHHHHHHHHHC--CCCCCcHHHHHHHHhhh--cCCcEEEEcCCCChhHHHH
Q 022724 32 ITSFDAMGIKDDLLRGIYQY--GFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 32 ~~~f~~~~l~~~i~~~l~~~--~~~~~~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~~ 87 (293)
..+|+++.=.++..+.+.+. .+..|. .+..+- -.+.+++.||+|+|||+..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 45788886566665555542 011221 122221 2357999999999999654
No 415
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=73.13 E-value=1.6 Score=47.47 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred hhcCCcEEEEcCCCChhHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~ 87 (293)
+..+++++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 446899999999999999543
No 416
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=73.04 E-value=1.7 Score=33.58 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+.++++|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36889999999999654
No 417
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=72.98 E-value=1.4 Score=35.76 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=24.7
Q ss_pred EEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 178 LLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 178 ~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
++++||.-.-+|......+..++..+......++++
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 189 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMS 189 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999988888776677776666653223345443
No 418
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=72.76 E-value=1.5 Score=35.98 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=27.1
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+......++++
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 215 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6678999999988887766666666666653323344443
No 419
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=72.62 E-value=1.6 Score=37.68 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=0.0
Q ss_pred EEEEcCCCChhHHHH
Q 022724 73 VIAQAQSGTGKTSMI 87 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~ 87 (293)
.+++|+||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 420
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.57 E-value=1.5 Score=35.77 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+......++++
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiiv 202 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6678999999988777766666666666553223345453
No 421
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=72.57 E-value=2.6 Score=36.45 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=16.7
Q ss_pred HhhhcCCc--EEEEcCCCChhHHHH
Q 022724 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 65 ~~i~~~~~--~li~~~Tg~GKT~~~ 87 (293)
..+++|.| ++.-|+||+|||...
T Consensus 109 ~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 109 QSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCCceEEEEeCCCCCCCceEe
Confidence 44557876 556699999999553
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=72.46 E-value=1.7 Score=33.99 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=13.6
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 423
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=72.23 E-value=1.5 Score=35.95 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=26.9
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+......++++
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~v 194 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 194 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 5678999999988888776666666666653223344443
No 424
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=72.15 E-value=3.3 Score=33.87 Aligned_cols=30 Identities=23% Similarity=0.291 Sum_probs=22.2
Q ss_pred CccEEEecchhhhhccccHHHHHHHHhhCC
Q 022724 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (293)
Q Consensus 175 ~l~~iViDE~h~~~~~~~~~~~~~i~~~l~ 204 (293)
+.+++++||.-.-+|......+..+++.+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 778999999977777666666666666653
No 425
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=72.12 E-value=1.4 Score=35.46 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=25.3
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+... ..++++
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~tvi~v 194 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSLMKG-RTTLVI 194 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTT-SEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 345789999998877776666666665555433 344443
No 426
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=71.93 E-value=1.7 Score=34.97 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=26.0
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCC-CCccEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLI 212 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~-~~~q~v~~ 212 (293)
.+.+++++||.-.-+|......+..++..+. ...-+++.
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~v 195 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 6678999999988777766666666665553 23334443
No 427
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=71.92 E-value=15 Score=33.99 Aligned_cols=68 Identities=7% Similarity=0.011 Sum_probs=46.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHHHH-hcCCcEEEeChHHHHHHHhcCCCCCCCccEE
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~i 179 (293)
+.++||.|+++.-++.+.+.+++. ++++..+++... ....+.. ....+|+|+|. .+. ..+++. ++++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R-~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTH-HHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHH-HHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEE
Confidence 347999999999999999988764 567888887532 2222222 34578999996 333 345664 7766
Q ss_pred E
Q 022724 180 V 180 (293)
Q Consensus 180 V 180 (293)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 3
No 428
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=71.81 E-value=2.7 Score=33.70 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.+..+++.||.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3457999999999999654
No 429
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=71.81 E-value=1.5 Score=36.19 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
.+.+++++||.-.-+|......+..++..+
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 567899999998777776565666555554
No 430
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=71.58 E-value=1.8 Score=35.45 Aligned_cols=40 Identities=25% Similarity=0.178 Sum_probs=28.5
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+......++++
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviiv 220 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIV 220 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3457899999988888777777777777775433445543
No 431
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=71.55 E-value=2 Score=32.69 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.3
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.++++|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 432
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.53 E-value=3.7 Score=34.60 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
+-+.+++++|+|||...
T Consensus 106 ~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999554
No 433
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=71.44 E-value=1.8 Score=35.11 Aligned_cols=40 Identities=18% Similarity=0.002 Sum_probs=27.5
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+......++++
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEE
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4468899999988888777777777776664333344443
No 434
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=71.38 E-value=1.9 Score=35.00 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+..++++|+.|||||...
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 346899999999999643
No 435
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=71.33 E-value=3.1 Score=35.75 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=15.0
Q ss_pred cCCc--EEEEcCCCChhHHHH
Q 022724 69 KGRD--VIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~--~li~~~Tg~GKT~~~ 87 (293)
.|.+ ++.-|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 577899999999654
No 436
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.28 E-value=1.9 Score=40.98 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
..++++.||+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999654
No 437
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=71.16 E-value=1.3 Score=35.87 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+..++++|++|||||...
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999643
No 438
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=70.98 E-value=2.5 Score=39.57 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=47.9
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHh--hccCCceEEEEECC--------cchHHHHHHHh----cCCcEEEeChHHHHHHH
Q 022724 101 EVQALILSPTRELATQTEKVILAI--GDFINIQAHACVGG--------KSVGEDIRKLE----HGVHVVSGTPGRVCDMI 166 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~ilV~Tp~~l~~~l 166 (293)
+.++||.++++..+..+.+.++.. ....|+++..++|+ .+..++.+.+. ...+|+|+|. +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 568999999999999999988753 22336788888888 66555544332 3468899984 1
Q ss_pred hcCCCCCCCccEEEe
Q 022724 167 KRKTLRTRAIKLLVL 181 (293)
Q Consensus 167 ~~~~~~~~~l~~iVi 181 (293)
-...+++.++++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 233566777777663
No 439
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=70.70 E-value=1.9 Score=35.41 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=29.4
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCC-CccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~-~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+.. ....++++
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 66789999999988888777778888877753 23444443
No 440
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=70.64 E-value=2.1 Score=32.72 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.2
Q ss_pred EEEEcCCCChhHHHHH
Q 022724 73 VIAQAQSGTGKTSMIA 88 (293)
Q Consensus 73 ~li~~~Tg~GKT~~~~ 88 (293)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999996543
No 441
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=70.60 E-value=2.4 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
|.-+.++||+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 446889999999999543
No 442
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=70.54 E-value=1.9 Score=35.03 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=27.2
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCC-ccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD-LQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~-~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..++..+... ...++++
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~v 185 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 567899999998888877666676666665332 3344443
No 443
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.37 E-value=7.4 Score=43.04 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.8
Q ss_pred HHHHh-hhcCCcEEEEcCCCChhHH
Q 022724 62 RAVMP-IIKGRDVIAQAQSGTGKTS 85 (293)
Q Consensus 62 ~~~~~-i~~~~~~li~~~Tg~GKT~ 85 (293)
..+.. +..+++++++||||+|||.
T Consensus 1295 ~ll~~ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1295 DVLHAWLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHHHHHHHTTCCCEEESSTTSSHHH
T ss_pred HHHHHHHHCCCcEEEECCCCCCHHH
Confidence 34444 4478899999999999994
No 444
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=70.05 E-value=3.1 Score=32.39 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
.-.+|.||+|+|||...
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 45788999999999553
No 445
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=70.04 E-value=1.6 Score=33.13 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.0
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-+.|+|++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999543
No 446
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=69.91 E-value=2.3 Score=33.60 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.5
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 447
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=69.62 E-value=2.1 Score=32.86 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
..+.+.|++|||||...
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999654
No 448
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=69.48 E-value=2.1 Score=33.49 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
..+.+.|+.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999644
No 449
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=69.31 E-value=3.1 Score=32.54 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=13.7
Q ss_pred cEEEEcCCCChhHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~ 88 (293)
.+++.||+||||+....
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999996443
No 450
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=69.18 E-value=3.4 Score=37.18 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=30.1
Q ss_pred hhcCCcEEEEcCCCChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (293)
+..|.-++|.|++|+|||...+-.+.+..... +.+++|+.--. -..|+..++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESSS-CHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEeccC-CHHHHHHHH
Confidence 33566799999999999954443333333221 33577776432 234555544
No 451
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=69.07 E-value=1.9 Score=34.57 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|.-+.+.||.|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556889999999999554
No 452
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=68.94 E-value=4.7 Score=39.54 Aligned_cols=77 Identities=18% Similarity=0.124 Sum_probs=56.1
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHHHH---HHhcC---CcEEEeChHHHHHHHhcCCCCC
Q 022724 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLEHG---VHVVSGTPGRVCDMIKRKTLRT 173 (293)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~ilV~Tp~~l~~~l~~~~~~~ 173 (293)
.+.++||.|+++.-+..+...+.. ..|+++..++|+.+..+..+ ...++ ++|+|+|. . -...+++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v-----~~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I-----GSEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C-----TTCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h-----hhcCCCc
Confidence 356899999999998888886653 34788999999976554433 33333 79999993 2 2346788
Q ss_pred CCccEEEecchh
Q 022724 174 RAIKLLVLDESD 185 (293)
Q Consensus 174 ~~l~~iViDE~h 185 (293)
.+++.+|+-+..
T Consensus 573 ~~~~~VI~~d~p 584 (968)
T 3dmq_A 573 QFASHMVMFDLP 584 (968)
T ss_dssp TTCCEEECSSCC
T ss_pred ccCcEEEEecCC
Confidence 889999887765
No 453
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=68.78 E-value=2.1 Score=33.17 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
+.-+.+.|++|+|||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999543
No 454
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=68.71 E-value=2.5 Score=33.42 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=15.8
Q ss_pred hhcCCcEEEEcCCCChhHHHH
Q 022724 67 IIKGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~~~ 87 (293)
+.+.+-+++.||+||||+...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH
Confidence 334466888999999998644
No 455
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=68.64 E-value=3.9 Score=31.83 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.7
Q ss_pred cEEEEcCCCChhHHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~~ 89 (293)
-.+++|+.|+|||.....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 478999999999976543
No 456
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.31 E-value=2.5 Score=32.68 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.8
Q ss_pred cEEEEcCCCChhHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~ 88 (293)
.+.++|+.|||||...-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999996543
No 457
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=68.15 E-value=2.4 Score=35.97 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
.-.+++||+|+|||...-
T Consensus 24 ~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 346899999999996543
No 458
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=67.90 E-value=2 Score=41.30 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.++.+++.||+|+|||..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999543
No 459
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=67.89 E-value=2.2 Score=35.45 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=24.6
Q ss_pred CCccEEEecchhhhhccccHHHHHHH-HhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDV-YRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i-~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+..+ +..+... ..++++
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~-~tviiv 215 (290)
T 2bbs_A 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILV 215 (290)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTT-SEEEEE
T ss_pred CCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCC-CEEEEE
Confidence 55689999999887777666666553 3334333 344443
No 460
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=67.05 E-value=24 Score=33.07 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=52.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchH---HHHHHHh---cCCcEEEeChHHHHHHHhcCCCCCCCcc
Q 022724 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVG---EDIRKLE---HGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (293)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~ilV~Tp~~l~~~l~~~~~~~~~l~ 177 (293)
.+++++++.-+..+.+.+++. ++.+..+||+.+.. ...+... ...+|+|+|. .+ ...+++ .+.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~-e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AI-GMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GG-GSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HH-HCCcCc-Ccc
Confidence 366688888888888877753 67889999998766 3344444 3468999996 22 345778 899
Q ss_pred EEEecchhhh
Q 022724 178 LLVLDESDEM 187 (293)
Q Consensus 178 ~iViDE~h~~ 187 (293)
+||.-.....
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998877553
No 461
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=66.82 E-value=2.7 Score=34.87 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.2
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-+.|.|++|+|||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999543
No 462
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=66.51 E-value=5.8 Score=32.33 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=25.6
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~ 205 (293)
.+.+++++||.-.-+|......+..++..+..
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence 56789999999888887777778778877754
No 463
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=66.50 E-value=2.6 Score=37.98 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=30.1
Q ss_pred cccCcccCCCCHHHHHHHHHCC--CCCCcHHHHHHHHhhh--cCCcEEEEcCCCChhHHHH
Q 022724 31 AITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 31 ~~~~f~~~~l~~~i~~~l~~~~--~~~~~~~Q~~~~~~i~--~~~~~li~~~Tg~GKT~~~ 87 (293)
+..+|+++.-.++....+.+.- +..+ ..+..+- -.+.+++.||+|+|||+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 4567888866666666665421 1111 1111111 1246999999999999543
No 464
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.26 E-value=2.8 Score=39.78 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
++++++.||+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 568999999999999554
No 465
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=66.24 E-value=4.2 Score=34.91 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChhHH
Q 022724 69 KGRDVIAQAQSGTGKTS 85 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~ 85 (293)
.|.-+.+.||+|+|||.
T Consensus 29 ~Ge~~~llGpsGsGKST 45 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTT 45 (359)
T ss_dssp TTCEEEEEESTTSSHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 57788999999999994
No 466
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=66.16 E-value=2.9 Score=35.37 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChhHHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~~ 89 (293)
.|..+++.||+|+|||...+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456689999999999954443
No 467
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=65.95 E-value=4.9 Score=35.46 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChhHHHHH
Q 022724 71 RDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~~ 88 (293)
+.++++|++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999995543
No 468
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=65.83 E-value=2.7 Score=35.30 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
.|.-+.|.||+|+|||..
T Consensus 89 ~g~ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTT 106 (312)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCchHHHH
Confidence 455688999999999954
No 469
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=65.58 E-value=2.8 Score=33.28 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.4
Q ss_pred cCCcEEEEcCCCChhHH
Q 022724 69 KGRDVIAQAQSGTGKTS 85 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~ 85 (293)
+|.-+.+.|+.|+|||.
T Consensus 19 ~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCEEEEEECSTTSCHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 45568999999999995
No 470
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=65.24 E-value=20 Score=35.00 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCc--------eEEEEECCcchHHHHHHH---
Q 022724 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI--------QAHACVGGKSVGEDIRKL--- 148 (293)
Q Consensus 80 g~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--- 148 (293)
.++|-.. +.-++........+.++||.++++..+..+.+.+.......++ .....+|+.+..++.+.+
T Consensus 611 ~~~K~~~-L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 611 ENPKLEE-LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCHHHHH-HHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CCHHHHH-HHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 3566533 3334443332334579999999999999999998875222223 333345555544443322
Q ss_pred h--cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecch
Q 022724 149 E--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (293)
Q Consensus 149 ~--~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~ 184 (293)
. ...+|+|+|- .+ ...+++..+++||.=+.
T Consensus 690 r~~g~~~VLVaT~-----~~-~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 690 KTSKDNRLLIATS-----VA-DEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ----CCSEEEEEC-----C-------CCCCSEEEEESC
T ss_pred hccCCeeEEEEeC-----ch-hcCCcchhCCEEEEeCC
Confidence 2 3468999994 22 23467777887776443
No 471
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=65.15 E-value=2.4 Score=38.17 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=44.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEECCcchHHH---HHHHh-cCCcEEEeChHHHHHHHhcCCCCCCCc
Q 022724 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (293)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~ilV~Tp~~l~~~l~~~~~~~~~l 176 (293)
+.++||.|+++.-+..+...+.+ .+..+..++++.+..+. .+... ...+|+|+|. .+ ...+++.++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l-~~GiDip~v 426 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VI-ARGIDVSQV 426 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hh-hcCCCccCC
Confidence 45899999999999888886654 45667777877554322 22222 4568999996 22 235778889
Q ss_pred cEEEecc
Q 022724 177 KLLVLDE 183 (293)
Q Consensus 177 ~~iViDE 183 (293)
+++|..+
T Consensus 427 ~~VI~~~ 433 (508)
T 3fho_A 427 NLVVNYD 433 (508)
T ss_dssp CEEEC--
T ss_pred CEEEEEC
Confidence 9988544
No 472
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=65.13 E-value=3 Score=34.40 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=13.6
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
-++++|++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 473
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=65.12 E-value=3.5 Score=32.77 Aligned_cols=20 Identities=15% Similarity=0.327 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCChhHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~ 88 (293)
.+..+.+.|+.|+|||...-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999996543
No 474
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=65.08 E-value=3.7 Score=31.36 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCChhHHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~~ 88 (293)
.|+-+++.|++|+|||...+
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 56789999999999995543
No 475
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=65.03 E-value=2.8 Score=33.71 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
.+.+++++||.-.-+|......+..++..+
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 567889999998877776666666666655
No 476
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=64.99 E-value=4.9 Score=34.50 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
.+.+++++||.-.-+|......+...++.+
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 667899999987777766555555555444
No 477
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=64.98 E-value=4.9 Score=34.76 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=20.1
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
.+.+++++||--.-+|......+...++.+
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 456789999987777766555555555444
No 478
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=64.60 E-value=5.9 Score=36.35 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=27.7
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~S 213 (293)
.+.+++++||.-.-+|......+...+..+.++. .+++.
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~i 535 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVI 535 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEE
Confidence 6678999999988888776777777776665433 44443
No 479
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=64.50 E-value=3.7 Score=35.23 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
|.-+.++||+|+|||...
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345889999999999543
No 480
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=64.47 E-value=3.9 Score=34.23 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
.++.++|.||.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 468899999999999943
No 481
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=64.35 E-value=8.4 Score=33.56 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHhhh---cCCcEEEEcCCCChhHHHH
Q 022724 55 KPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 55 ~~~~~Q~~~~~~i~---~~~~~li~~~Tg~GKT~~~ 87 (293)
.|...-..+++.+. +|+..+|.|+.|+|||...
T Consensus 157 e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp STTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred cchhccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 45556677887765 7899999999999999544
No 482
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=64.05 E-value=4.3 Score=35.11 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChhHHH
Q 022724 69 KGRDVIAQAQSGTGKTSM 86 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~ 86 (293)
.|+.+++.||+|+|||..
T Consensus 168 ~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp TCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999953
No 483
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=64.02 E-value=2.9 Score=34.24 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=12.3
Q ss_pred cEEEEcCCCChhHH
Q 022724 72 DVIAQAQSGTGKTS 85 (293)
Q Consensus 72 ~~li~~~Tg~GKT~ 85 (293)
++.++||+|+|||.
T Consensus 4 ~v~lvG~nGaGKST 17 (270)
T 3sop_A 4 NIMVVGQSGLGKST 17 (270)
T ss_dssp EEEEEESSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999994
No 484
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=63.92 E-value=5.4 Score=34.33 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~ 204 (293)
.+.+++++||.-.-+|......+..+++.+.
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDIN 210 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 6679999999988877766666666666553
No 485
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.88 E-value=3 Score=39.68 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.5
Q ss_pred cEEEEcCCCChhHHHHH
Q 022724 72 DVIAQAQSGTGKTSMIA 88 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~~ 88 (293)
++++.||+|+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999996543
No 486
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=63.79 E-value=2.7 Score=36.05 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCChhHH
Q 022724 69 KGRDVIAQAQSGTGKTS 85 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~ 85 (293)
.|.-+.+.||+|+|||.
T Consensus 40 ~Ge~~~llGpnGsGKST 56 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTT 56 (355)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67889999999999994
No 487
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=63.67 E-value=3.9 Score=32.76 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChhHHHH
Q 022724 70 GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~~~ 87 (293)
...+.+.||+|+|||...
T Consensus 9 ~~~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVS 26 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457899999999999654
No 488
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=63.44 E-value=5.5 Score=34.36 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=20.8
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
.+.+++++||--.-+|......+...++.+
T Consensus 158 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 158 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 567889999997777766555555555444
No 489
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=63.41 E-value=3.4 Score=33.22 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=13.7
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+.|.|+.|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999654
No 490
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=63.39 E-value=2.9 Score=35.97 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=20.8
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhC
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l 203 (293)
.+.+++++||--.-+|......+...++.+
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 567889999987777766555555555544
No 491
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=63.32 E-value=8.7 Score=34.48 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=42.9
Q ss_pred CChhHHHHHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccCCceEE--------EEECCcchHHHHHHH---
Q 022724 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH--------ACVGGKSVGEDIRKL--- 148 (293)
Q Consensus 80 g~GKT~~~~~~~~~~l~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--- 148 (293)
.++|-.. +.-++........+.++||.++++..+..+.+.++......++++. ..+++.+..++.+.+
T Consensus 370 ~~~K~~~-L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 370 ENPKLEE-LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp CCHHHHH-HHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred CChHHHH-HHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 4566533 2233332221123568999999999999999988764222223333 334444443333222
Q ss_pred h--cCCcEEEeChHHHHHHHhcCCCCCCCccEEEecch
Q 022724 149 E--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (293)
Q Consensus 149 ~--~~~~ilV~Tp~~l~~~l~~~~~~~~~l~~iViDE~ 184 (293)
. ...+|+|+|. . + ...+++..+++||.=+.
T Consensus 449 ~~~g~~~vLvaT~-~----~-~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 449 KTSKDNRLLIATS-V----A-DEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp -----CCEEEEEC-----------------CEEEEETC
T ss_pred cccCceEEEEEcC-c----h-hcCCCchhCCEEEEeCC
Confidence 2 3468999995 1 1 23577888888876443
No 492
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=63.05 E-value=3.4 Score=32.88 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChhHHHH
Q 022724 69 KGRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 69 ~~~~~li~~~Tg~GKT~~~ 87 (293)
.|+-+++.|+.|+|||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 5678999999999999543
No 493
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=62.95 E-value=3 Score=31.57 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCChhHH
Q 022724 70 GRDVIAQAQSGTGKTS 85 (293)
Q Consensus 70 ~~~~li~~~Tg~GKT~ 85 (293)
.-.+++.|++|+|||.
T Consensus 21 ~~ki~v~G~~~~GKSs 36 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTT 36 (190)
T ss_dssp CEEEEEEECTTSSHHH
T ss_pred ccEEEEECCCCCCHHH
Confidence 3479999999999994
No 494
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=62.80 E-value=3.7 Score=31.60 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.4
Q ss_pred cEEEEcCCCChhHHHH
Q 022724 72 DVIAQAQSGTGKTSMI 87 (293)
Q Consensus 72 ~~li~~~Tg~GKT~~~ 87 (293)
.+.+.|+.|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999654
No 495
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=62.78 E-value=16 Score=30.67 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHCCCC-----CCcHHHHH-HHHhhhc----------------CCcEEEEcCCCChhHHHH
Q 022724 40 IKDDLLRGIYQYGFE-----KPSAIQQR-AVMPIIK----------------GRDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 40 l~~~i~~~l~~~~~~-----~~~~~Q~~-~~~~i~~----------------~~~~li~~~Tg~GKT~~~ 87 (293)
.++++++..++.++. .++..-.. ....+.. |+-+++.|+.|+|||...
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a 161 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETA 161 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHH
Confidence 477888888887765 22222122 2222333 778999999999997443
No 496
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=62.78 E-value=3.4 Score=34.05 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChhHHHH
Q 022724 71 RDVIAQAQSGTGKTSMI 87 (293)
Q Consensus 71 ~~~li~~~Tg~GKT~~~ 87 (293)
..+.++|+.|||||...
T Consensus 76 ~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35899999999999654
No 497
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=62.76 E-value=2.5 Score=31.79 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=14.2
Q ss_pred hhcCCcEEEEcCCCChhHH
Q 022724 67 IIKGRDVIAQAQSGTGKTS 85 (293)
Q Consensus 67 i~~~~~~li~~~Tg~GKT~ 85 (293)
-.+.-.+++.|++|+|||.
T Consensus 18 ~~~~~~i~v~G~~~~GKSs 36 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTT 36 (181)
T ss_dssp ---CEEEEEEEETTSSHHH
T ss_pred CCceeEEEEECCCCCCHHH
Confidence 3445689999999999994
No 498
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=62.72 E-value=32 Score=31.32 Aligned_cols=80 Identities=8% Similarity=0.133 Sum_probs=51.2
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhhcc----CCceEEEEECCcch--HHHHHHHhcC-Cc---EEEeChHHHHHHHhc
Q 022724 99 SREVQALILSPTRELATQTEKVILAIGDF----INIQAHACVGGKSV--GEDIRKLEHG-VH---VVSGTPGRVCDMIKR 168 (293)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~-~~---ilV~Tp~~l~~~l~~ 168 (293)
..+.++||.|+++.-+..+.+.+.+.... .+-.+..++|+.+. ...++...++ .+ |+|+|. ++ .
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l-~ 510 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LL-T 510 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TT-T
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hh-h
Confidence 34468999999999999999999876432 22235556666543 1222333332 22 777763 22 3
Q ss_pred CCCCCCCccEEEecch
Q 022724 169 KTLRTRAIKLLVLDES 184 (293)
Q Consensus 169 ~~~~~~~l~~iViDE~ 184 (293)
..+++..++++|++..
T Consensus 511 ~GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 511 TGVDAPTCKNVVLARV 526 (590)
T ss_dssp TTCCCTTEEEEEEESC
T ss_pred cCccchheeEEEEEec
Confidence 3578899999998765
No 499
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=62.51 E-value=11 Score=37.21 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=22.4
Q ss_pred cHHHHHHHHhhh---cCCcEEEEcCCCChhHHHHHH
Q 022724 57 SAIQQRAVMPII---KGRDVIAQAQSGTGKTSMIAL 89 (293)
Q Consensus 57 ~~~Q~~~~~~i~---~~~~~li~~~Tg~GKT~~~~~ 89 (293)
+.+=..|+..+. .++.++|.|.+|+|||.+.-.
T Consensus 128 faiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~ 163 (1052)
T 4anj_A 128 FAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 163 (1052)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH
Confidence 334445555544 245799999999999977543
No 500
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=62.27 E-value=2.9 Score=38.38 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCccEEEecchhhhhccccHHHHHHHHhhCCCCccEEEE
Q 022724 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (293)
Q Consensus 174 ~~l~~iViDE~h~~~~~~~~~~~~~i~~~l~~~~q~v~~ 212 (293)
.+.+++++||.-.-+|......+...+..+.++. .+++
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-t~i~ 531 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDR-TTLI 531 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTS-EEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEE
Confidence 4568899999988777766666666666655443 4444
Done!