Query 022725
Match_columns 293
No_of_seqs 241 out of 1161
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 2.1E-66 4.6E-71 484.1 15.9 235 16-284 7-285 (286)
2 PLN00025 photosystem II light 100.0 3.2E-64 7E-69 465.2 15.3 209 72-284 43-256 (262)
3 PLN00171 photosystem light-ha 100.0 3.4E-64 7.3E-69 474.5 11.1 214 68-284 96-323 (324)
4 PLN00101 Photosystem I light-h 100.0 7.9E-62 1.7E-66 446.7 13.4 190 72-284 45-250 (250)
5 PLN00098 light-harvesting comp 100.0 2.9E-61 6.2E-66 446.6 15.7 195 72-285 54-266 (267)
6 PLN00097 photosystem I light h 100.0 4.2E-60 9E-65 433.8 12.5 187 76-280 40-243 (244)
7 PLN00048 photosystem I light h 100.0 8.4E-60 1.8E-64 436.3 13.8 200 74-285 36-261 (262)
8 PLN00099 light-harvesting comp 100.0 6.6E-60 1.4E-64 432.9 12.8 194 78-285 42-238 (243)
9 PLN00147 light-harvesting comp 100.0 1.1E-58 2.3E-63 426.6 14.0 195 74-286 39-252 (252)
10 PLN00100 light-harvesting comp 100.0 9E-57 1.9E-61 411.7 12.1 184 77-291 32-216 (246)
11 PLN00170 photosystem II light- 100.0 2.2E-50 4.7E-55 371.5 11.9 174 77-268 48-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 5E-41 1.1E-45 288.0 9.0 147 94-257 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 2.8E-39 6E-44 291.4 11.1 154 94-265 46-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 8.7E-34 1.9E-38 254.6 11.0 146 108-265 47-199 (202)
15 PLN00098 light-harvesting comp 99.6 2.4E-15 5.3E-20 140.3 6.1 71 211-281 76-154 (267)
16 PLN00101 Photosystem I light-h 99.5 5.9E-15 1.3E-19 136.6 5.7 54 211-264 67-121 (250)
17 PLN00147 light-harvesting comp 99.5 3.2E-14 6.9E-19 131.9 5.5 52 211-262 59-111 (252)
18 PLN00170 photosystem II light- 99.4 1.3E-13 2.7E-18 128.0 5.6 54 211-264 71-125 (255)
19 PLN00097 photosystem I light h 99.4 1.6E-13 3.5E-18 126.6 5.5 53 211-263 58-111 (244)
20 PLN00171 photosystem light-ha 99.4 1.5E-13 3.3E-18 130.9 5.3 53 211-263 124-177 (324)
21 PLN00048 photosystem I light h 99.4 7.8E-14 1.7E-18 130.0 1.9 53 99-151 186-238 (262)
22 PLN00025 photosystem II light 99.4 3E-13 6.5E-18 126.0 5.5 52 211-262 67-119 (262)
23 PLN00100 light-harvesting comp 99.4 4.4E-13 9.6E-18 123.8 5.2 49 211-259 49-98 (246)
24 PLN00089 fucoxanthin-chlorophy 99.4 2.3E-13 4.9E-18 123.4 2.2 52 100-151 153-205 (209)
25 PLN00187 photosystem II light- 99.3 2.7E-13 5.8E-18 127.6 2.0 53 99-151 211-263 (286)
26 PLN00099 light-harvesting comp 99.3 1.1E-12 2.4E-17 121.2 4.7 50 211-260 58-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 6.6E-12 1.4E-16 107.8 5.7 50 211-261 6-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.1 2.7E-11 5.8E-16 109.4 3.2 45 213-257 41-87 (202)
29 PHA02337 putative high light i 98.0 4E-06 8.7E-11 55.8 3.0 28 236-263 4-31 (35)
30 PLN00084 photosystem II subuni 97.8 1.4E-05 3.1E-10 70.7 3.4 46 229-274 130-176 (214)
31 PLN00014 light-harvesting-like 97.4 8.8E-05 1.9E-09 68.4 3.0 37 234-270 159-195 (250)
32 PHA02337 putative high light i 96.5 0.00049 1.1E-08 45.9 -0.5 28 124-151 3-30 (35)
33 PLN00014 light-harvesting-like 95.1 0.0036 7.8E-08 57.9 -1.4 29 123-151 159-187 (250)
34 PLN00084 photosystem II subuni 86.6 0.14 3E-06 45.8 -1.0 34 118-151 130-164 (214)
35 PLN02449 ferrochelatase 44.5 15 0.00033 37.8 2.3 22 244-265 463-484 (485)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.1e-66 Score=484.14 Aligned_cols=235 Identities=39% Similarity=0.717 Sum_probs=194.2
Q ss_pred chhhcCCccccccccccCCCCCCCCCCCcceeecccCCCCCCCCCCCCcCCcchhhhhhhccCCccCccCCCcCCCCCCC
Q 022725 16 AKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIP 95 (293)
Q Consensus 16 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~r~~~~p~g~~~~~~~P 95 (293)
.|.|.|.++. . ++++..+++++|+.++...++ +++ .+...||+++|++|||+ .++|
T Consensus 7 ~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~r~~w~p~-----~~~P 62 (286)
T PLN00187 7 ASSFMGTRVP-D----------VASNSGRIVARFGFGKKKKAA-KKA-------KKKSSKVGADRPLWFPG-----AKAP 62 (286)
T ss_pred chhhhhhhhc-c----------cccCccchhhhhccCcccccC-Ccc-------ccCccCCCCCccccCCC-----CCCc
Confidence 3557776664 1 344677888988753321111 111 01246789999999996 7999
Q ss_pred CCCCCCCCCCCCCCCCCCCCChhh-------------------------------------------HHHHHHhhhhhcc
Q 022725 96 EYLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHAR 132 (293)
Q Consensus 96 ~~L~G~~pGd~gFDPLGLs~~p~~-------------------------------------------l~~~ReaELkHGR 132 (293)
+||||++|||||||||||+++|+. |+||||+||||||
T Consensus 63 ~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGR 142 (286)
T PLN00187 63 EWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGR 142 (286)
T ss_pred ccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhH
Confidence 999999999999999999999885 6999999999999
Q ss_pred eeeeecccchhhhhhccCCCCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeeccCcCCCCC
Q 022725 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDK 212 (293)
Q Consensus 133 ~AMLA~vG~lv~E~l~~~G~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~g~~~~d~ 212 (293)
|||||++||++||+++ | ..|+++|...+..+ ..|++.+.++.+..++++|+++||++|++|+.+ .+..+.
T Consensus 143 wAMLAvaG~lvpEll~--G------~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~-~~~~~~ 212 (286)
T PLN00187 143 WAMLATLGALSVEALT--G------VTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKR 212 (286)
T ss_pred HHHHHhhchhhHHhcc--C------Cccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccC-CCCCCC
Confidence 9999999999999984 2 25999997654322 358887777666667789999999999999864 333467
Q ss_pred CCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhc
Q 022725 213 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 284 (293)
Q Consensus 213 ~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~ 284 (293)
.||||. ||||||.+|+++++++|++|||||||||+|++||++|+.+||+||++||.+|++||+||||++++.
T Consensus 213 ~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 213 LYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred CCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 799996 999999999999999999999999999999999999999999999999999999999999999874
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=3.2e-64 Score=465.18 Aligned_cols=209 Identities=54% Similarity=0.959 Sum_probs=182.8
Q ss_pred hhhhccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 72 ~~~~~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
.+.|||+||++|| |+++ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++||++||+++..|
T Consensus 43 ~~~~~g~~R~~~l--~p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 43 GSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cccccCCCCcccc--CCcc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 4579999999999 3444 589999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCcchhhhccccccCCCccccccccchh---HHHHHHHHHHHHHhhhheeeeccCc--CCCCCCCCCCCCCCCCCCC
Q 022725 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAK 226 (293)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p~---~~~~~~~~qv~l~G~~E~~r~~~g~--~~~d~~~PGg~FDPLgl~~ 226 (293)
..+ .+..||++|...+..++++|++.+..+ .+...+++|+++||++|.+|+.++. +..|.+||||+||||||.+
T Consensus 120 ~~~-~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~ 198 (262)
T PLN00025 120 VKF-GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLAD 198 (262)
T ss_pred cCc-CcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCC
Confidence 543 356899999877777778999876432 2334457899999999999986532 1235689999999999999
Q ss_pred ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhc
Q 022725 227 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 284 (293)
Q Consensus 227 d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~ 284 (293)
|+++++++|+||||||||||+||+||++|+++||++|++||.+|++||+||||+++..
T Consensus 199 d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~ 256 (262)
T PLN00025 199 DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYAT 256 (262)
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999998753
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=3.4e-64 Score=474.50 Aligned_cols=214 Identities=49% Similarity=0.820 Sum_probs=185.4
Q ss_pred chhhhhhhccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhh
Q 022725 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147 (293)
Q Consensus 68 ~~~~~~~~~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l 147 (293)
.+++.+.|||++|++|||+. . .++|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||++
T Consensus 96 ~~~~~~~~~g~~R~~wl~~~--~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l 172 (324)
T PLN00171 96 KARNESFWYGEERPRWLGPI--P-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVL 172 (324)
T ss_pred hhcccCcccCCCCccccCCC--C-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHh
Confidence 46678899999999999642 2 37999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCcchhhhccccccCCCccccccccch-----hHHHHHHHHHHHHHhhhheeeeccCc--------CCCCCCC
Q 022725 148 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLVGGAEYYRITNGL--------DLEDKLH 214 (293)
Q Consensus 148 ~~~G~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p-----~~~~~~~~~qv~l~G~~E~~r~~~g~--------~~~d~~~ 214 (293)
++.|....++++||++|...+.+..++|++.+.. ..+..++++|+++|+++|++|+.+-. ..+|..|
T Consensus 173 ~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gY 252 (324)
T PLN00171 173 DLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINY 252 (324)
T ss_pred ccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccC
Confidence 8876543456789999987777777778765531 22345668899999999999876411 1235568
Q ss_pred CCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhc
Q 022725 215 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 284 (293)
Q Consensus 215 PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~ 284 (293)
|||. ||||||.+|+++++++|++|||||||||+||+||++|+.+||++|++||.+|++||+||||++++.
T Consensus 253 PGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 253 PGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred CcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 9987 999999999999999999999999999999999999999999999999999999999999999874
No 4
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=7.9e-62 Score=446.71 Aligned_cols=190 Identities=39% Similarity=0.733 Sum_probs=163.5
Q ss_pred hhhhccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 72 ~~~~~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
.+.++.++|++|+|+ .+.|+||||++|||+|||||||++++++++|||++||+||||||||++|+++||+++..|
T Consensus 45 ~~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g 119 (250)
T PLN00101 45 RSFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 119 (250)
T ss_pred ccccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCC
Confidence 345667899999996 789999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeecc----Cc------------CCCCCCCC
Q 022725 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL------------DLEDKLHP 215 (293)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~----g~------------~~~d~~~P 215 (293)
... .+.|+++|+. .|++.. ..++++|+++||++|++|+.+ |. ...|..||
T Consensus 120 ~~~--~p~w~~ag~~-------~~~~~~-----~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YP 185 (250)
T PLN00101 120 IIN--APQWYDAGKA-------EYFASS-----STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYP 185 (250)
T ss_pred CcC--CCccccccch-------hhcccc-----hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCC
Confidence 543 3479998753 355433 234567889999999999753 11 11245699
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhc
Q 022725 216 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 284 (293)
Q Consensus 216 Gg~FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~ 284 (293)
||.||||||.++ +++|+||||||||||+||+||++|+++||+||++||.+|++||+||||+++++
T Consensus 186 GG~FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 186 GGIFNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred CCccCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 999999999865 37899999999999999999999999999999999999999999999999874
No 5
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=2.9e-61 Score=446.58 Aligned_cols=195 Identities=42% Similarity=0.778 Sum_probs=169.5
Q ss_pred hhhhccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 72 ~~~~~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
.+.+|+++|++|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||++++.|
T Consensus 54 ~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g 128 (267)
T PLN00098 54 VCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG 128 (267)
T ss_pred ccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 557799999999997 789999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeeccC----c-C-----------CCCCCCC
Q 022725 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG----L-D-----------LEDKLHP 215 (293)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~g----~-~-----------~~d~~~P 215 (293)
.. ....|+++|.. .|++.+. .+.++|+++||++|.+|+.+- . + ..|.+||
T Consensus 129 ~~--~~~~w~~Ag~~-------~~~~~~~-----~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yP 194 (267)
T PLN00098 129 FI--ENFSWYDAGAR-------EYFADPT-----TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYP 194 (267)
T ss_pred cc--cccccccccch-------hhccCch-----HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCC
Confidence 52 24579998753 3554431 235679999999999887541 1 0 1145799
Q ss_pred CCC-CCCCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhcC
Q 022725 216 GGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 285 (293)
Q Consensus 216 Gg~-FDPLgl~~-d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~~ 285 (293)
||+ ||||||.+ |+++++++|+||||||||||+||+||++|+.+||++|++||.+|++||+||||++++.+
T Consensus 195 Gg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 195 GGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 999 99999974 89999999999999999999999999999999999999999999999999999999865
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=4.2e-60 Score=433.76 Aligned_cols=187 Identities=40% Similarity=0.628 Sum_probs=161.5
Q ss_pred ccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCCCCCC
Q 022725 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155 (293)
Q Consensus 76 ~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~ 155 (293)
.+++|++|||+ .++|+||||++|||+|||||||++++++++|||++||+||||||||++|+++||+++..|...
T Consensus 40 ~~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~- 113 (244)
T PLN00097 40 AAADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD- 113 (244)
T ss_pred cCCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc-
Confidence 35799999996 789999999999999999999999999999999999999999999999999999998776532
Q ss_pred CcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeecc----Cc-------------CCCCCCCCCCC
Q 022725 156 PEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL-------------DLEDKLHPGGP 218 (293)
Q Consensus 156 p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~----g~-------------~~~d~~~PGg~ 218 (293)
...||++++.. .|+... ..++.+|+++||++|.+|+.+ |. ...|..||||.
T Consensus 114 -~p~W~~Ag~~~------~~~~~~-----~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~ 181 (244)
T PLN00097 114 -LPNWIDAAKWD------GYWAGA-----GPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGL 181 (244)
T ss_pred -CCccccCCcch------hccccc-----hhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCC
Confidence 34799998531 133321 134567888899999988753 10 01244699999
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchh
Q 022725 219 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 280 (293)
Q Consensus 219 FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~ 280 (293)
||||||.+|+++++++|+||||||||||+|++||++|+.+||+||++||.+|++||+||||+
T Consensus 182 FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 182 FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=8.4e-60 Score=436.27 Aligned_cols=200 Identities=43% Similarity=0.739 Sum_probs=168.7
Q ss_pred hhccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChh------hHHHHHHhhhhhcceeeeecccchhhhhh
Q 022725 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------DFSKYQAYELIHARWAMLGAAGFIIPEAF 147 (293)
Q Consensus 74 ~~~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~------~l~~~ReaELkHGR~AMLA~vG~lv~E~l 147 (293)
.+|+++|++|+|+ .+.|+||||++|||+|||||||++ ++ +.+|+|++|||||||||||++|+++||++
T Consensus 36 ~~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell 109 (262)
T PLN00048 36 AKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEIL 109 (262)
T ss_pred CCCCCCCceecCC-----CCCccccCCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHh
Confidence 3457899999996 799999999999999999999984 33 67999999999999999999999999999
Q ss_pred ccCCCCCC-CcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeecc----Cc--------------C
Q 022725 148 NKFGANCG-PEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL--------------D 208 (293)
Q Consensus 148 ~~~G~~~~-p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~----g~--------------~ 208 (293)
++.|.... ....|+++|+... .+..+|++.+ ..++++|+++||++|.+|+++ |. .
T Consensus 110 ~~~g~~~~~~~~~w~~ag~~~~-~~~~~y~~~p-----~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~ 183 (262)
T PLN00048 110 GKAGLIPQETALPWFQSGVIPP-AGTYDYWADP-----YTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGG 183 (262)
T ss_pred ccCCcccccccccccccccccc-ccccccccch-----hHHHHHHHHHhhheeeeccccccCCCcccccccccchhcccc
Confidence 87765321 1236999986432 3345677753 134577899999999998765 10 0
Q ss_pred CCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhcC
Q 022725 209 LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 285 (293)
Q Consensus 209 ~~d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~~ 285 (293)
..|..||||+ ||||||.+|+++++++|++|||||||||+|++||++|+++||++|++||.+|++||+||||++++..
T Consensus 184 ~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 184 SGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred ccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccccc
Confidence 0155799998 9999999999999999999999999999999999999999999999999999999999999999753
No 8
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=6.6e-60 Score=432.94 Aligned_cols=194 Identities=42% Similarity=0.778 Sum_probs=166.9
Q ss_pred CCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCCCCCCCc
Q 022725 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (293)
Q Consensus 78 ~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p~ 157 (293)
.+|..|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++||++||+++.
T Consensus 42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------- 108 (243)
T PLN00099 42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------- 108 (243)
T ss_pred cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence 477899996 7899999999999999999999999999999999999999999999999999999753
Q ss_pred chhhhcccc-ccCCCccccccccchhH-HHHHHHHHHHHHhhhheeeeccCcCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 022725 158 AVWFKTGAL-LLDGNTLNYFGKNIPIN-LVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLK 235 (293)
Q Consensus 158 ~~W~~aG~~-~~~~~~l~y~g~~~p~~-~~~~~~~qv~l~G~~E~~r~~~g~~~~d~~~PGg~FDPLgl~~d~e~~~~~k 235 (293)
..|++++.. .+.++...|++.+.++. +..++++|+++||++|.+|.... +.+++.||||.||||||.+|+++++++|
T Consensus 109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~-~~~~~~yPGd~FDPlGl~kd~~~~~~~k 187 (243)
T PLN00099 109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKFEEYK 187 (243)
T ss_pred CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC-CCCCCcCCCCcCCcccccCCHHHHHHHH
Confidence 147777642 23444556777665542 34556889999999999886532 2235679999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHh-hccCCcchhhhhhhcCCCcccchhhhhcC
Q 022725 236 VKEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVISG 285 (293)
Q Consensus 236 ~kELkNGRLAMlAi~G~~~Q~-~vtG~gPl~nL~~hladP~~~ni~~~~~~ 285 (293)
+|||||||||||||+||++|+ .+||++|++||.+|++||+||||++.++.
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 999999999999999999998 57999999999999999999999998865
No 9
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=1.1e-58 Score=426.62 Aligned_cols=195 Identities=41% Similarity=0.733 Sum_probs=165.8
Q ss_pred hhccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCCCC
Q 022725 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153 (293)
Q Consensus 74 ~~~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~ 153 (293)
..++++|++|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++..|..
T Consensus 39 ~~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~ 113 (252)
T PLN00147 39 PVVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR 113 (252)
T ss_pred ccCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc
Confidence 3557899999996 78999999999999999999999999999999999999999999999999999998876643
Q ss_pred CCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeecc----Cc--------------CCCCCCCC
Q 022725 154 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL--------------DLEDKLHP 215 (293)
Q Consensus 154 ~~p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~----g~--------------~~~d~~~P 215 (293)
. .+.|++++...++ +... ...+++|+++||++|.+|+.+ |. ...+..||
T Consensus 114 ~--~p~w~~ag~~~~~------~~~~-----~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yP 180 (252)
T PLN00147 114 N--LPVWYEAGAVKFE------FAST-----RTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYP 180 (252)
T ss_pred C--Ccchhhcccchhc------cccc-----hHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCc
Confidence 2 3469988753221 1111 234577898999999988532 10 01135699
Q ss_pred CCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhcCC
Q 022725 216 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 286 (293)
Q Consensus 216 Gg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~~~ 286 (293)
||+ ||||||.+|+++++++|+||||||||||+||+||++|+++||++|++||.+|++||+||||++++..+
T Consensus 181 Gd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~~ 252 (252)
T PLN00147 181 GGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252 (252)
T ss_pred ccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcCC
Confidence 999 99999999999999999999999999999999999999999999999999999999999999998753
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=9e-57 Score=411.66 Aligned_cols=184 Identities=34% Similarity=0.560 Sum_probs=154.1
Q ss_pred cCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCCCCCCC
Q 022725 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (293)
Q Consensus 77 ~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p 156 (293)
..+|++|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++.
T Consensus 32 ~~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~------- 99 (246)
T PLN00100 32 ARARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL------- 99 (246)
T ss_pred cCCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc-------
Confidence 4489999996 7899999999999999999999999999999999999999999999999999999752
Q ss_pred cchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeeccCcCCCCCCCCCCC-CCCCCCCCChHHHHHHH
Q 022725 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGP-FDPLGLAKDPDQFALLK 235 (293)
Q Consensus 157 ~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~g~~~~d~~~PGg~-FDPLgl~~d~e~~~~~k 235 (293)
+.|+++|... |..+ ...++++|+++||++|.+|+.+-....+...||++ ||||||.+ +++|
T Consensus 100 -P~w~~ag~~~-------~~~~-----~~~l~~iqill~g~~E~~r~~~~~~~g~~~~pg~~~FDPLGl~~-----~~~K 161 (246)
T PLN00100 100 -PKFWEAGAEK-------YGLD-----LQTLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDS-----PEMK 161 (246)
T ss_pred -cchhhcchhh-------hccc-----hhHHHHHHHHHHHHHhhhcccccccccccCCCCCCCCCcccccH-----HHHH
Confidence 2488877532 2111 12355789999999999987652222234568888 99999963 5799
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhcCCcccCC
Q 022725 236 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAP 291 (293)
Q Consensus 236 ~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~~~~~~~~ 291 (293)
+||||||||||+||+||++|+.+||++|++||.+|++||+||||+++.. +.|.++
T Consensus 162 ~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~~-~~~~~~ 216 (246)
T PLN00100 162 VKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSSV-GPETVA 216 (246)
T ss_pred HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCCC-CCccch
Confidence 9999999999999999999999999999999999999999999999743 344443
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=2.2e-50 Score=371.47 Aligned_cols=174 Identities=37% Similarity=0.629 Sum_probs=141.9
Q ss_pred cCCccCccCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCCCCCC
Q 022725 77 GPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155 (293)
Q Consensus 77 ~~~r~~~~p~g-~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~ 155 (293)
..+|+.|+|+- .-.....|+||||++|||+|||||||++|+++++|||++||+||||||||++||++||+++.
T Consensus 48 ~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g------ 121 (255)
T PLN00170 48 AQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------ 121 (255)
T ss_pred cCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC------
Confidence 35788899851 00123579999999999999999999999999999999999999999999999999999752
Q ss_pred CcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeeccCc----------------------CCCCCC
Q 022725 156 PEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGL----------------------DLEDKL 213 (293)
Q Consensus 156 p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~g~----------------------~~~d~~ 213 (293)
..|+++|... .+. .|..+..++.+|+++||++|.+|+.+.. ...+..
T Consensus 122 --~~w~~aG~~~------~~~---~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~ 190 (255)
T PLN00170 122 --IPWFEAGADP------GAI---APFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQG 190 (255)
T ss_pred --CChhhCCccc------ccc---CccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcc
Confidence 2599998642 111 1222334567899999999999986521 012456
Q ss_pred CCCCC-CCCCCCCC---------ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhh
Q 022725 214 HPGGP-FDPLGLAK---------DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 268 (293)
Q Consensus 214 ~PGg~-FDPLgl~~---------d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~ 268 (293)
||||. ||||||.+ |+++++++|+||||||||||+|++||++|+ .||++|++||.
T Consensus 191 yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 191 YPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 99997 99999985 789999999999999999999999999999 69999999974
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=5e-41 Score=288.00 Aligned_cols=147 Identities=41% Similarity=0.692 Sum_probs=114.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCCCCC--CCcchhhhccccccCCC
Q 022725 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDGN 171 (293)
Q Consensus 94 ~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~--~p~~~W~~aG~~~~~~~ 171 (293)
+|++|||+++||+||||+||++++ +++|||++|||||||||||++|++++|++++++... .....|++++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 589999999999999999999986 999999999999999999999999999998765321 11123554320
Q ss_pred ccccccccchhHHHHHHH-HHHHHHhhhheeeeccCcC-----CCCCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhH
Q 022725 172 TLNYFGKNIPINLVFAVI-AEIVLVGGAEYYRITNGLD-----LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRL 244 (293)
Q Consensus 172 ~l~y~g~~~p~~~~~~~~-~qv~l~G~~E~~r~~~g~~-----~~d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRL 244 (293)
+ .. ...++ ..++++|.+|.++..+... ..+..+||+. |||+|+.+|+++++++|++|||||||
T Consensus 74 -~-----~~----~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRl 143 (156)
T PF00504_consen 74 -I-----PV----PAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRL 143 (156)
T ss_dssp -S-----SS----HSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHH
T ss_pred -h-----hh----hhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 1 01 12233 3455689999987654211 2356899998 99999998999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 022725 245 AMFAMLGFFLQAY 257 (293)
Q Consensus 245 AMlAi~G~~~Q~~ 257 (293)
|||||+|+++|+.
T Consensus 144 AMla~~g~~~~e~ 156 (156)
T PF00504_consen 144 AMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999973
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=2.8e-39 Score=291.41 Aligned_cols=154 Identities=30% Similarity=0.385 Sum_probs=115.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-ChhhHHHHHHhhhhhcceeeeecccchhhhhhccCCCCC--CCcchhhhccccccCC
Q 022725 94 IPEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDG 170 (293)
Q Consensus 94 ~P~~L~G~~pGd~gFDPLGLs~-~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~--~p~~~W~~aG~~~~~~ 170 (293)
.|+.|||. .||++||||||++ ++++++|||++|||||||||||++|+++||.++.+|... ...+.|+.+.
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~------ 118 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAH------ 118 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHH------
Confidence 46679999 9999999999996 567899999999999999999999999999877655210 0000111100
Q ss_pred CccccccccchhHHHHH-HHHHHHH-HhhhheeeeccC--cCCCCCCCCCCC-CCCCCCC-CChHHHHHHHHHHHhhhhH
Q 022725 171 NTLNYFGKNIPINLVFA-VIAEIVL-VGGAEYYRITNG--LDLEDKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGRL 244 (293)
Q Consensus 171 ~~l~y~g~~~p~~~~~~-~~~qv~l-~G~~E~~r~~~g--~~~~d~~~PGg~-FDPLgl~-~d~e~~~~~k~kELkNGRL 244 (293)
+ .+... .++|+++ +|++|....... ...+++++|||+ ||||||. +|+++++++|++|||||||
T Consensus 119 ---~--------~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRl 187 (209)
T PLN00089 119 ---D--------ALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRL 187 (209)
T ss_pred ---H--------hhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHH
Confidence 0 01111 2467764 889995322111 112345799999 9999995 6899999999999999999
Q ss_pred HHHHHHHHHHHhhccCCcchh
Q 022725 245 AMFAMLGFFLQAYVTGEGPVE 265 (293)
Q Consensus 245 AMlAi~G~~~Q~~vtG~gPl~ 265 (293)
|||||+||++|+.+||++.++
T Consensus 188 AM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 188 AMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999998753
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=8.7e-34 Score=254.63 Aligned_cols=146 Identities=19% Similarity=0.306 Sum_probs=101.9
Q ss_pred CCCCCCCC--ChhhHHHHHHhhhhhcceeeeecccchhhhhhccCCCCCCCcchhhhccccccCCCccccccccchhHHH
Q 022725 108 YDPFGLSK--KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185 (293)
Q Consensus 108 FDPLGLs~--~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~ 185 (293)
|||+||++ ++++++|||++|||||||||||++||++||.+.+++.........+.. ..+ .+..+ -.+.
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~---~p~--~~~a~-----~~vp 116 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSD---IPN--GFAAL-----DAIP 116 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccc---ccc--chhhh-----hhcc
Confidence 99999974 689999999999999999999999999999844433211100011110 000 00000 0122
Q ss_pred HHHHHHHHH-HhhhheeeeccCcCCCCCCCCCCC-CC--CCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccC
Q 022725 186 FAVIAEIVL-VGGAEYYRITNGLDLEDKLHPGGP-FD--PLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 260 (293)
Q Consensus 186 ~~~~~qv~l-~G~~E~~r~~~g~~~~d~~~PGg~-FD--PLgl~~-d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG 260 (293)
...++||++ +|++|+++..+-. +++++|||+ ++ +|||.. |+++++++|+|||||||||||||+||++|+.++|
T Consensus 117 ~~g~~qi~~~ig~~E~~~~~~~~--~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g 194 (202)
T PLN00120 117 TAGLLQILAFIGFLELAVMKDIT--GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGV 194 (202)
T ss_pred hhHHHHHHHHHHHHHHHhhcccc--cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345778764 8999986553211 135688864 22 455553 7889999999999999999999999999999999
Q ss_pred Ccchh
Q 022725 261 EGPVE 265 (293)
Q Consensus 261 ~gPl~ 265 (293)
+.|+-
T Consensus 195 ~~~~~ 199 (202)
T PLN00120 195 ELPII 199 (202)
T ss_pred CCcCC
Confidence 98863
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.57 E-value=2.4e-15 Score=140.30 Aligned_cols=71 Identities=31% Similarity=0.542 Sum_probs=59.2
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhh-------hhhcCCCcccchhh
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL-------AKHLSDPFANNLLT 281 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL-------~~hladP~~~ni~~ 281 (293)
|+.+|||+ ||||||.+|+++++++|++||||||+||+|++||++|+++++.+++++. .+++.||....+++
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q 154 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQ 154 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHHH
Confidence 55689999 9999999999999999999999999999999999999999988776632 13466776544444
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.54 E-value=5.9e-15 Score=136.60 Aligned_cols=54 Identities=39% Similarity=0.682 Sum_probs=51.1
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 264 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl 264 (293)
|+.+|||+ ||||||.+|+++++++|++|||||||||+|++||++|+++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 55689999 9999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.48 E-value=3.2e-14 Score=131.94 Aligned_cols=52 Identities=31% Similarity=0.553 Sum_probs=49.0
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCc
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 262 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~g 262 (293)
|+.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 59 dg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 59 DGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 67899999 99999999999999999999999999999999999999987755
No 18
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.43 E-value=1.3e-13 Score=128.02 Aligned_cols=54 Identities=39% Similarity=0.585 Sum_probs=49.6
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 264 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl 264 (293)
++.+|||+ ||||+|.+|+++++++|++||+|||+||+|++|+++|++++|...+
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~ 125 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 125 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChh
Confidence 45689999 9999999999999999999999999999999999999999986433
No 19
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.42 E-value=1.6e-13 Score=126.62 Aligned_cols=53 Identities=30% Similarity=0.466 Sum_probs=49.6
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 263 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gP 263 (293)
|+..|||+ ||||||++|+++++++|++||||||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 55789999 999999999999999999999999999999999999999998654
No 20
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.41 E-value=1.5e-13 Score=130.87 Aligned_cols=53 Identities=36% Similarity=0.422 Sum_probs=49.1
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 263 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gP 263 (293)
|+..|||+ ||||||++|+++++++|++||||||+||+|++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 56789999 999999999999999999999999999999999999999876543
No 21
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.39 E-value=7.8e-14 Score=130.05 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 99 ~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
|..+|||++||||||++++++++++|..||||||+||+|++|+++|++++..|
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 34699999999999999999999999999999999999999999999987544
No 22
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.39 E-value=3e-13 Score=126.05 Aligned_cols=52 Identities=31% Similarity=0.511 Sum_probs=48.1
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCc
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 262 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~g 262 (293)
|...|||+ ||||||++|+++++++|++||||||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 45689999 99999999999999999999999999999999999999998653
No 23
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.37 E-value=4.4e-13 Score=123.79 Aligned_cols=49 Identities=37% Similarity=0.579 Sum_probs=46.5
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 259 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vt 259 (293)
|+.+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|++++
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 56789999 99999999999999999999999999999999999999975
No 24
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.35 E-value=2.3e-13 Score=123.36 Aligned_cols=52 Identities=31% Similarity=0.535 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCCC-CChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 100 GEVPGDYGYDPFGLS-KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 100 G~~pGd~gFDPLGLs-~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
+..|||+||||+||. +|+++++++|.+||||||+||+|++|+++||+++..|
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g 205 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 578999999999994 6899999999999999999999999999999987544
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.34 E-value=2.7e-13 Score=127.64 Aligned_cols=53 Identities=34% Similarity=0.511 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 99 ~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
+..+|||++||||||++++++++++|+.|||||||||+|++|+++|+.++..|
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~G 263 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Confidence 44589999999999999999999999999999999999999999999987654
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.32 E-value=1.1e-12 Score=121.22 Aligned_cols=50 Identities=32% Similarity=0.479 Sum_probs=46.8
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccC
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 260 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG 260 (293)
|+..|||+ ||||+|++++++++++|.+||||||.||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 56789999 999999999999999999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.26 E-value=6.6e-12 Score=107.77 Aligned_cols=50 Identities=48% Similarity=0.780 Sum_probs=45.1
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCC
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 261 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~ 261 (293)
++.++|++ |||+||++|+ .+.++|..||||||+||+|++|++++++.++.
T Consensus 6 ~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 6 DGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred cCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 34467777 9999999888 89999999999999999999999999999874
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.13 E-value=2.7e-11 Score=109.39 Aligned_cols=45 Identities=42% Similarity=0.786 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCC--CChHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q 022725 213 LHPGGPFDPLGLA--KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 257 (293)
Q Consensus 213 ~~PGg~FDPLgl~--~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~ 257 (293)
..|.|+||||||. +|+++++++|.+||||||+||+|++||++|+.
T Consensus 41 ~~p~g~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 41 QAPLGFFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCCCCCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 4677889999997 47899999999999999999999999999996
No 29
>PHA02337 putative high light inducible protein
Probab=98.04 E-value=4e-06 Score=55.84 Aligned_cols=28 Identities=32% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHhhccCCcc
Q 022725 236 VKEIKNGRLAMFAMLGFFLQAYVTGEGP 263 (293)
Q Consensus 236 ~kELkNGRLAMlAi~G~~~Q~~vtG~gP 263 (293)
..|+-|||||||+|+..+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999864
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.82 E-value=1.4e-05 Score=70.67 Aligned_cols=46 Identities=37% Similarity=0.421 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-CCcchhhhhhhcCCC
Q 022725 229 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDP 274 (293)
Q Consensus 229 e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vt-G~gPl~nL~~hladP 274 (293)
.+..+.|..|+.||||||+||+--++-+++| |+|++.||...-.-|
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvP 176 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVP 176 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCc
Confidence 4566778899999999999999999999999 999999986544333
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.44 E-value=8.8e-05 Score=68.36 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=33.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhh
Q 022725 234 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 270 (293)
Q Consensus 234 ~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~h 270 (293)
+...|+-|||+|||||+..++-+++||++.++|+...
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 3568999999999999999999999999999988653
No 32
>PHA02337 putative high light inducible protein
Probab=96.53 E-value=0.00049 Score=45.93 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=24.4
Q ss_pred HHhhhhhcceeeeecccchhhhhhccCC
Q 022725 124 QAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 124 ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
..+|..|||+||+|++-.+..|+++.-+
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 3689999999999999999999987543
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.09 E-value=0.0036 Score=57.93 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.3
Q ss_pred HHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 123 YQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 123 ~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
+.++|+.|||+||+|++-.++.|+++.-|
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~g 187 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVG 187 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 35789999999999999999999987543
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=86.63 E-value=0.14 Score=45.79 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=28.8
Q ss_pred hhHHHHHHhhhhhcceeeeecccchhhhhhc-cCC
Q 022725 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFN-KFG 151 (293)
Q Consensus 118 ~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~-~~G 151 (293)
...+..+..|+.+||+||||++-.++.|+++ ..|
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqG 164 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMG 164 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcc
Confidence 4566667789999999999999999999988 444
No 35
>PLN02449 ferrochelatase
Probab=44.49 E-value=15 Score=37.75 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhccCCcchh
Q 022725 244 LAMFAMLGFFLQAYVTGEGPVE 265 (293)
Q Consensus 244 LAMlAi~G~~~Q~~vtG~gPl~ 265 (293)
+||+||+.+++-++++|.||+.
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999999999999999973
Done!