Query 022725
Match_columns 293
No_of_seqs 241 out of 1161
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 10:08:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 2.3E-65 7.7E-70 466.0 15.2 215 72-293 13-232 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.2E-64 4E-69 462.3 4.9 194 75-283 6-242 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 4.7E-60 1.6E-64 438.5 -2.6 195 71-285 55-268 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 7.9E-58 2.7E-62 424.9 5.2 198 76-285 52-275 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 7.8E-59 2.7E-63 427.0 -2.4 189 73-285 45-250 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 3.2E-56 1.1E-60 407.3 5.5 192 79-284 44-238 (241)
7 2bhw_A Chlorophyll A-B binding 99.4 2.6E-13 8.7E-18 123.4 6.5 50 211-260 37-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.4 3.9E-14 1.3E-18 130.1 -0.4 54 211-264 67-121 (251)
9 3pl9_A Chlorophyll A-B binding 99.3 1.4E-13 4.7E-18 125.7 1.5 50 101-151 172-221 (243)
10 2wsc_2 LHCA2, type II chloroph 99.3 1E-13 3.5E-18 128.5 0.3 54 211-264 78-132 (269)
11 2wsc_3 LHCA3, type II chloroph 99.3 1.9E-13 6.4E-18 127.1 -0.5 54 98-151 199-252 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.2 9.7E-13 3.3E-17 120.2 -0.1 50 211-260 59-109 (241)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2.3e-65 Score=465.99 Aligned_cols=215 Identities=51% Similarity=0.923 Sum_probs=185.4
Q ss_pred hhhhccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 72 ~~~~~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
.++|||++|++||| +++ .+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|
T Consensus 13 ~~~~~~~~r~~~l~--~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 13 GSPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp TCTTSSTTCCCTTG--GGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCCCcccccC--ccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 45899999999994 444 589999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCcchhhhccccccCCCccccccccchh---HHHHHHHHHHHHHhhhheeeeccCc--CCCCCCCCCCCCCCCCCCC
Q 022725 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAK 226 (293)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p~---~~~~~~~~qv~l~G~~E~~r~~~g~--~~~d~~~PGg~FDPLgl~~ 226 (293)
..+ ++..|+++|...+.+.+++|++.+... .+...+++|+++||++|.+|+.++. ...|..||||.||||||.+
T Consensus 90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~ 168 (232)
T 2bhw_A 90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAD 168 (232)
T ss_dssp CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTC
T ss_pred cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhcc
Confidence 644 367899999776666667787755321 1334457899999999999876532 2236679999999999999
Q ss_pred ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhcCCcccCCCC
Q 022725 227 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 293 (293)
Q Consensus 227 d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~~~~~~~~~~ 293 (293)
|+++++++|++||||||||||||+|+++|+.+||++|++||.+|++|||||||++++ .+.+|++
T Consensus 169 ~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~---~~~~~~~ 232 (232)
T 2bhw_A 169 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYA---TNFVPGK 232 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGT---TTTCSCC
T ss_pred chHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHH---HhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999984 4677764
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.2e-64 Score=462.25 Aligned_cols=194 Identities=41% Similarity=0.811 Sum_probs=137.4
Q ss_pred hccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChh------------------------------------
Q 022725 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118 (293)
Q Consensus 75 ~~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~------------------------------------ 118 (293)
|++++|++|||+ .++|+||||++|||||||||||+++||
T Consensus 6 ~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T 3pl9_A 6 GFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSL 80 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccc
Confidence 456799999996 899999999999999999999999987
Q ss_pred -------hHHHHHHhhhhhcceeeeecccchhhhhhccCCCCCCCcchhhhccccccCCCccccccccchhHHHHHHHHH
Q 022725 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191 (293)
Q Consensus 119 -------~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~q 191 (293)
+++||||+|||||||||||++||++||+++. ..|+++|...+.+ +++|++.+.+..+..++++|
T Consensus 81 ~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~q 151 (243)
T 3pl9_A 81 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWIE 151 (243)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHS-CEEETTEEECCCHHHHHHHH
T ss_pred ccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------ccccccccccccc-ccccccCccchhhHHHHHHH
Confidence 3899999999999999999999999999852 3599988765543 46788877766666777899
Q ss_pred HHHHhhhheeeeccCcCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhc
Q 022725 192 IVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 271 (293)
Q Consensus 192 v~l~G~~E~~r~~~g~~~~d~~~PGg~FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hl 271 (293)
+++||++|.+|+.+ .+.++..||||+||||||.+|+++++++|++|||||||||+||+|+++|+++||+||++||.+|+
T Consensus 152 v~lmG~~E~~R~~~-~~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hl 230 (243)
T 3pl9_A 152 VLVIGYIEFQRNAE-LDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHL 230 (243)
T ss_dssp HHHHHHHHHHHHSC-CCTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc-cCCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 99999999999865 33445679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhhh
Q 022725 272 SDPFANNLLTVI 283 (293)
Q Consensus 272 adP~~~ni~~~~ 283 (293)
+||+||||++++
T Consensus 231 adP~~~ni~~~~ 242 (243)
T 3pl9_A 231 SDPLHTTILDRF 242 (243)
T ss_dssp HCSGGGSTTTTT
T ss_pred cCcchhhhhhhc
Confidence 999999999986
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=4.7e-60 Score=438.46 Aligned_cols=195 Identities=41% Similarity=0.773 Sum_probs=131.2
Q ss_pred hhhhhccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccC
Q 022725 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (293)
Q Consensus 71 ~~~~~~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~ 150 (293)
....||+++|++|||+ .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||+++..
T Consensus 55 ~~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~ 129 (269)
T 2wsc_2 55 TVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKL 129 (269)
T ss_dssp --------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCT
T ss_pred eeecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccC
Confidence 3456899999999996 78999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeecc----Cc------------CCCCCCC
Q 022725 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL------------DLEDKLH 214 (293)
Q Consensus 151 G~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~----g~------------~~~d~~~ 214 (293)
|... .+.|+++|.. .|+.... .++++|+++||++|.+|+.+ |. +..|..|
T Consensus 130 G~~~--~p~w~~aG~~-------~~~~~~~-----~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~ 195 (269)
T 2wsc_2 130 GILN--TPSWYTAGEQ-------EYFTDTT-----TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGY 195 (269)
T ss_dssp TSSS--CCCCCSTTSS-------SSCCCTT-----SHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSC
T ss_pred Cccc--Cccccccchh-------hhhcchH-----HHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCC
Confidence 7643 3468887642 3554432 23467888999999988643 11 1124579
Q ss_pred CCCC-CCCCCCCC-ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhh-hhcCCCcccchhhhhcC
Q 022725 215 PGGP-FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA-KHLSDPFANNLLTVISG 285 (293)
Q Consensus 215 PGg~-FDPLgl~~-d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~-~hladP~~~ni~~~~~~ 285 (293)
|||+ ||||||.+ |+++++++|++||||||||||||+|+++|+.+||++|++||. +|++|| ||||++++..
T Consensus 196 PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 196 PGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp TTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred CCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 9999 99999985 788899999999999999999999999999999999999999 999999 9999998865
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=7.9e-58 Score=424.87 Aligned_cols=198 Identities=44% Similarity=0.766 Sum_probs=111.9
Q ss_pred ccCCccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhH------HHHHHhhhhhcceeeeecccchhhhhhcc
Q 022725 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFNK 149 (293)
Q Consensus 76 ~~~~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l------~~~ReaELkHGR~AMLA~vG~lv~E~l~~ 149 (293)
||++|++|||+ .+.|+||||++|||+||||||| +|++++ +|||++|||||||||||++|++++|+++.
T Consensus 52 ~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~ 125 (276)
T 2wsc_3 52 QGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125 (276)
T ss_dssp ---------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS
T ss_pred cCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc
Confidence 89999999995 7899999999999999999999 678889 99999999999999999999999999988
Q ss_pred CCCCCCC-cchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeecc----Cc--------------CCC
Q 022725 150 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL--------------DLE 210 (293)
Q Consensus 150 ~G~~~~p-~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~----g~--------------~~~ 210 (293)
.|..... ...|++.+.....+ ..+|++.... ++++|+++||++|.+|+.+ |. ...
T Consensus 126 ~g~~~~~~p~~w~~~g~ip~aG-~~~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~ 199 (276)
T 2wsc_3 126 AGLIPQETALPWFRTGFIPPAG-TYNYWADSYT-----LFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSG 199 (276)
T ss_dssp CCCCCCSSCCSSSSCCCC------CCCSCCCCS-----TTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCS
T ss_pred cccccccCcchhhhhhcccchh-HHHHhccchH-----HHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccc
Confidence 7754221 23499876543332 3467765532 3467888999999988653 11 112
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhcC
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 285 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~~ 285 (293)
|..||||+ ||||||.+|+++++++|++||||||||||||+|+++|+++||++|++||.+|++|||||||++++..
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 45799998 9999999988889999999999999999999999999999999999999999999999999998764
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=7.8e-59 Score=427.01 Aligned_cols=189 Identities=39% Similarity=0.748 Sum_probs=125.7
Q ss_pred hhhccC-CccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 73 AKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 73 ~~~~~~-~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
..||++ +|++|+|+ .++|+||||++|||+|||||||++|+++++|||++|||||||||||++|++++|+++..|
T Consensus 45 ~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g 119 (251)
T 2wsc_4 45 ASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIG 119 (251)
T ss_dssp -----------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSC
T ss_pred ccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCC
Confidence 468999 89999996 789999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhheeeecc----Cc-C-----------CCCCCCC
Q 022725 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN----GL-D-----------LEDKLHP 215 (293)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~~l~y~g~~~p~~~~~~~~~qv~l~G~~E~~r~~~----g~-~-----------~~d~~~P 215 (293)
... .+.|+++|.. +|++.... ++++|+++||++|.+|+.+ |. + ..|..||
T Consensus 120 ~~~--~p~w~~aG~~-------~~~~~~~~-----l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yP 185 (251)
T 2wsc_4 120 IIN--VPKWYAAGKE-------EYFASSST-----LFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYP 185 (251)
T ss_dssp SSC--CCCCSCCCSS-------SCSSCSSC-----TTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSS
T ss_pred ccC--CccccccchH-------hhhccchH-----HHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCC
Confidence 543 3469887642 45554321 2356888899999987643 21 0 0123689
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhcCCCcccchhhhhcC
Q 022725 216 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 285 (293)
Q Consensus 216 Gg~FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl~nL~~hladP~~~ni~~~~~~ 285 (293)
||+||||++.+ ++++|+|||||||| ||||+||++|+.+||++|++||.+|++|||||||++++.+
T Consensus 186 Gg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 186 GGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp CCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred CCccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 99999999975 67899999999999 9999999999999999999999999999999999998764
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=3.2e-56 Score=407.33 Aligned_cols=192 Identities=43% Similarity=0.798 Sum_probs=139.3
Q ss_pred CccCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCCCCCCCcc
Q 022725 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158 (293)
Q Consensus 79 ~r~~~~p~g~~~~~~~P~~L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p~~ 158 (293)
.|..|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++. .
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~--------~ 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY--------G 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC--------C
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC--------C
Confidence 45679996 7899999999999999999999999999999999999999999999999999999753 1
Q ss_pred hhhhccc-cccCCCccccccccchh-HHHHHHHHHHHHHhhhheeeeccCcCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 022725 159 VWFKTGA-LLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 236 (293)
Q Consensus 159 ~W~~aG~-~~~~~~~l~y~g~~~p~-~~~~~~~~qv~l~G~~E~~r~~~g~~~~d~~~PGg~FDPLgl~~d~e~~~~~k~ 236 (293)
.|++++. ..+.++...|++.+.++ .+..++++|+++||++|.+|..+. +.+++.||||.|||||+.+|+++++++|+
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~-~~~~~~yPgg~fDPlgl~~~~~~~~~~r~ 189 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKKKYPGGAFDPLGYSKDPKKLEELKV 189 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC-SSCCSSSCSCCSCSSSCSCSSSSCCCSCT
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCCCCCcccccccccchhHHHHHHH
Confidence 3655543 12334445677665554 234456789999999999987542 34466899999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHh-hccCCcchhhhhhhcCCCcccchhhhhc
Q 022725 237 KEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVIS 284 (293)
Q Consensus 237 kELkNGRLAMlAi~G~~~Q~-~vtG~gPl~nL~~hladP~~~ni~~~~~ 284 (293)
+|||||||||+|++|+++|+ .+||+||++||.+|++|||||||++++.
T Consensus 190 ~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~ 238 (241)
T 2wsc_1 190 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238 (241)
T ss_dssp THHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC--------
T ss_pred hhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeec
Confidence 99999999999999999999 5899999999999999999999999764
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.39 E-value=2.6e-13 Score=123.44 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=46.7
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccC
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 260 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG 260 (293)
++..|||+ ||||||++|++.++++|..||||||+||+|++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 45689999 999999999999999999999999999999999999998764
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.37 E-value=3.9e-14 Score=130.11 Aligned_cols=54 Identities=39% Similarity=0.677 Sum_probs=39.4
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 264 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl 264 (293)
++.+|||+ ||||||.+|+++++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 34689999 9999999999999999999999999999999999999999998776
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.34 E-value=1.4e-13 Score=125.74 Aligned_cols=50 Identities=38% Similarity=0.630 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 101 ~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
.+|||+ ||||||++++++++++|++||||||+||+|++|+++||+++..|
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~G 221 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 589999 99999999999999999999999999999999999999988654
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.34 E-value=1e-13 Score=128.47 Aligned_cols=54 Identities=35% Similarity=0.618 Sum_probs=36.3
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcch
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 264 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG~gPl 264 (293)
++..|||+ ||||||.+|+++++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 34579999 9999999999999999999999999999999999999999876544
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.30 E-value=1.9e-13 Score=127.10 Aligned_cols=54 Identities=22% Similarity=0.424 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCCCCCCCChhhHHHHHHhhhhhcceeeeecccchhhhhhccCC
Q 022725 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (293)
Q Consensus 98 L~G~~pGd~gFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (293)
.|..+|||++||||||++++++++++|++||||||+||||++|+++||+++..|
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g 252 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSC
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 345689999999999999888899999999999999999999999999988654
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.22 E-value=9.7e-13 Score=120.21 Aligned_cols=50 Identities=34% Similarity=0.512 Sum_probs=45.3
Q ss_pred CCCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccC
Q 022725 211 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 260 (293)
Q Consensus 211 d~~~PGg~-FDPLgl~~d~e~~~~~k~kELkNGRLAMlAi~G~~~Q~~vtG 260 (293)
++..|||+ ||||||.+|+++++++|.+||||||+||+|++|+++|++++.
T Consensus 59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 45689999 999999999999999999999999999999999999998753
Done!