BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022731
(293 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R52|A Chain A, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R52|B Chain B, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R52|C Chain C, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R52|D Chain D, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R53|A Chain A, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
Length = 382
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 131/268 (48%), Positives = 168/268 (62%), Gaps = 8/268 (2%)
Query: 6 RPSHADATYDMKYXXXXXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 65
RPSHAD TY KY ARETIGRVA GA+A+K L Q + EI+A+V+Q
Sbjct: 101 RPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE 160
Query: 66 VVLPEDVVDHEM------LTLDQVES-NIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXT 118
+ + D D E +T ++V+S +RCPD A M+ I+ T
Sbjct: 161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVT 220
Query: 119 CIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD-E 177
C+VRN P GLG P FDKLEA LA AM+S+PA+KGFE+GSGF G + GS+HND FY + E
Sbjct: 221 CVVRNLPTGLGEPCFDKLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKE 280
Query: 178 FGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDP 237
+RT+TN SGG+QGGISNGE I + FK +TI ++Q T T + +E L A+GRHDP
Sbjct: 281 TNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDP 340
Query: 238 CVVPRAVPMVEAMVALVLMDQLMAQHAQ 265
V PRA+P+VEAM ALVL D L+ Q A+
Sbjct: 341 AVTPRAIPIVEAMTALVLADALLIQKAR 368
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UMF|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1UMF|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1UMF|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1UMF|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 365
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 135/264 (51%), Gaps = 23/264 (8%)
Query: 5 YRPSHADATYDMKYXXXXXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 64
+RPSHAD TY KY ARE+ RVA GA AK +L++ G + + +
Sbjct: 100 FRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLREI-GIVCESGIIEIG 158
Query: 65 NVVLPEDVVDH----EMLTLDQVESNIVRCPDPEYAEK--MIAAIDAXXXXXXXXXXXXT 118
+ +H E+ LD+ + E A+K + AI
Sbjct: 159 GIKAKNYDFNHALKSEIFALDE---------EQEEAQKTAIQNAIKNHDSIGGVALIRAR 209
Query: 119 CIVRN--CPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD 176
I N P GLG ++ KL+A++A+AMM L K E+G G + L GSE+ND D
Sbjct: 210 SIKTNQKLPIGLGQGLYAKLDAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYND--LMD 267
Query: 177 EFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHD 236
+ G + +NRSGG+ GG+SNGE I +R+ FKPT +I + Q T+ E E + +GRHD
Sbjct: 268 QKGFL---SNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLKGRHD 324
Query: 237 PCVVPRAVPMVEAMVALVLMDQLM 260
PC+ R + E+++ALVL D ++
Sbjct: 325 PCIAIRGSVVCESLLALVLADMVL 348
>pdb|1ZTB|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis
pdb|2G85|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis At 2.22 Angstrons Of
Resolution
Length = 401
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 124/253 (49%), Gaps = 5/253 (1%)
Query: 6 RPSHADATYDMKYXXXXXX-XXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 64
RP HAD +KY ARET RVA G VA+ L+Q G E+L++V
Sbjct: 112 RPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISI- 170
Query: 65 NVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNC 124
P + L ++++ VR D MIA I+A +
Sbjct: 171 GASAPYEGPPPRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGL 230
Query: 125 PRGLGSPVFD--KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIR 182
P GLGS +L+++LA A+M + A KG E+G GF GS +DE Y G +R
Sbjct: 231 PVGLGSFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVR 290
Query: 183 TRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPR 242
+ TNR+GG++GG++NG+ + +R A KP ST+ R TV + + R D C VP
Sbjct: 291 S-TNRAGGLEGGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPA 349
Query: 243 AVPMVEAMVALVL 255
A +VE MVALVL
Sbjct: 350 AGVVVETMVALVL 362
>pdb|2O11|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase
pdb|2O12|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Fmn
pdb|2QHF|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Nca
Length = 407
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 124/253 (49%), Gaps = 5/253 (1%)
Query: 6 RPSHADATYDMKYXXXXXX-XXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 64
RP HAD +KY ARET RVA G VA+ L+Q G E+L++V
Sbjct: 112 RPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISI- 170
Query: 65 NVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNC 124
P + L ++++ VR D MIA I+A +
Sbjct: 171 GASAPYEGPPPRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGL 230
Query: 125 PRGLGSPVFD--KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIR 182
P GLGS +L+++LA A+M + A KG E+G GF GS +DE Y G +R
Sbjct: 231 PVGLGSFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVR 290
Query: 183 TRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPR 242
+ TNR+GG++GG++NG+ + +R A KP ST+ R TV + + R D C VP
Sbjct: 291 S-TNRAGGLEGGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPA 349
Query: 243 AVPMVEAMVALVL 255
A +VE MVALVL
Sbjct: 350 AGVVVETMVALVL 362
>pdb|4ECD|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
pdb|4ECD|B Chain B, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
Length = 398
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 120/253 (47%), Gaps = 3/253 (1%)
Query: 6 RPSHADATYDMKYXXXXXX-XXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 64
RP HAD T KY ARET RVA G VAK+ L Q G +A+V
Sbjct: 114 RPGHADLTGMRKYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFGIRTVAHVVALG 173
Query: 65 NVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNC 124
V D+ L+ ++++ VR D E ++I I+ +
Sbjct: 174 GVQTNPDLPLPTPDDLEALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGV 233
Query: 125 PRGLGSPVFD--KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIR 182
P G+G+ V +L+A LA A+M + A KG E+G GF GS+ +DE + G I
Sbjct: 234 PAGIGTYVESDRRLDAALASAIMGIQAFKGVEIGDGFLAASRPGSQAHDEIVVNADGRID 293
Query: 183 TRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPR 242
+NR+GGI+GG+SNG++I +R A KP +I + TV E+ R D VP
Sbjct: 294 RLSNRAGGIEGGMSNGQVIRVRGAMKPIPSIPKALRTVDVLTGESAQAINQRSDSTAVPA 353
Query: 243 AVPMVEAMVALVL 255
A + EAMV L L
Sbjct: 354 ASVVAEAMVRLTL 366
>pdb|1Q1L|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 401
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 124/271 (45%), Gaps = 19/271 (7%)
Query: 6 RPSHADATYDMKYXXXXXXX-XXXXXARETIGRVAPGAVAKKILKQFAGTEILAYV---- 60
RP HAD + +KY ARET RVA GAV KK L +F G +I ++V
Sbjct: 113 RPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSEF-GIKIGSFVVSIG 171
Query: 61 -------SQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXX 113
PE ++ + ++ E + +R P PE E+ ID
Sbjct: 172 QKEVEELKDKSYFANPEKLLSYH----EKAEDSELRIPFPEKDEEFKTYIDEVKEKGESL 227
Query: 114 XXXXTCIVRNCPRGLGSPV-FDK-LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHND 171
N P GLGS + +D+ ++ +A+A S+ A KG E+G GF GS+ +D
Sbjct: 228 GGVFEVFALNVPPGLGSHIQWDRRIDGRIAQAXXSIQAIKGVEIGLGFEAARRFGSQVHD 287
Query: 172 EFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIA 231
E E +N GG +GGI+NG I +R+A KP T+ +V E KE
Sbjct: 288 EIGWSEGKGYFRHSNNLGGTEGGITNGXPIVVRVAXKPIPTLKNPLRSVDIETKEEMKAG 347
Query: 232 RGRHDPCVVPRAVPMVEAMVALVLMDQLMAQ 262
+ R D VP A + EA +A+VL D L+ +
Sbjct: 348 KERTDIVAVPAASVVGEAXLAIVLADALLEK 378
>pdb|1SQ1|A Chain A, Crystal Structure Of The Chorismate Synthase From
Campylobacter Jejuni, Northeast Structural Genomics
Target Br19
Length = 370
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 119/256 (46%), Gaps = 9/256 (3%)
Query: 5 YRPSHADATYDMKYXXXXXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 64
+RP+HAD TY KY ARE++ RVA GAVA +L++F + S
Sbjct: 99 FRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAXLLREFD----ICVQSGVF 154
Query: 65 NVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNC 124
V + E + + + + C DP+ I V
Sbjct: 155 GVGTFVSNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGX 214
Query: 125 PRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTR 184
GLG ++DKL+++LA A+ + A K E+G G + GS +ND +F
Sbjct: 215 LIGLGEVLYDKLDSKLAHALXGINAVKAVEIGEGINASKXRGSCNNDALKDGKF-----L 269
Query: 185 TNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAV 244
+N SGGI GGISNGE + ++ FKPT +I KQ ++ + + +GRHDPCV R
Sbjct: 270 SNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGS 329
Query: 245 PMVEAMVALVLMDQLM 260
+ A V LVL D L+
Sbjct: 330 VVASAXVRLVLADCLL 345
>pdb|1QXO|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
pdb|1QXO|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
pdb|1QXO|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
pdb|1QXO|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
Length = 388
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 133/270 (49%), Gaps = 12/270 (4%)
Query: 6 RPSHADATYDMKYX-XXXXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVS--Q 62
RP HAD +KY ARET RVA GAVAK++L + EI +V
Sbjct: 107 RPGHADLVGGIKYRFDDLRNSLERSSARETTXRVAVGAVAKRLLAEL-DXEIANHVVVFG 165
Query: 63 AHNVVLPEDVVDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIV 121
+ +PE++ E+ Q E +IV + E +++ ID +V
Sbjct: 166 GKEIDVPENLTVAEIKQRAAQSEVSIV---NQEREQEIKDYIDQIKRDGDTIGGVVETVV 222
Query: 122 RNCPRGLGSPV-FD-KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDE-FYTDEF 178
P GLGS V +D KL+A LA+A++S+ A KG E G GF + GS+ DE ++ E
Sbjct: 223 GGVPVGLGSYVQWDRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVXDEILWSKED 282
Query: 179 GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPC 238
G R RTN GG +GG +NG+ I +R KP T+ + +V E E R DP
Sbjct: 283 GYTR-RTNNLGGFEGGXTNGQPIVVRGVXKPIPTLYKPLXSVDIETHEPYKATVERSDPT 341
Query: 239 VVPRAVPMVEAMVALVLMDQLMAQHAQCHL 268
+P A + EA+VA VL +++ + + +L
Sbjct: 342 ALPAAGXVXEAVVATVLAQEILEKFSSDNL 371
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
Length = 150
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 244 VPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMK 280
VP M LV DQ M + A C L + PD++ ++
Sbjct: 15 VPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQ 51
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 158 GFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEII-----NMRIAFKPTST 212
G A + + S ++ F+ FGNI +QGG+S+G + N F +
Sbjct: 1 GMASSGMADSANHLPFF---FGNITREEAEDYLVQGGMSDGLYLLRQSRNYLGGFALSVA 57
Query: 213 IGRKQN--TVTREKKETELIARGR 234
GRK + T+ RE T IA GR
Sbjct: 58 HGRKAHHYTIERELNGTYAIAGGR 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,771,308
Number of Sequences: 62578
Number of extensions: 292826
Number of successful extensions: 536
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 13
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)