Query 022731
Match_columns 293
No_of_seqs 109 out of 1050
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:44:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0082 AroC Chorismate syntha 100.0 1E-110 3E-115 797.9 25.4 270 1-279 97-369 (369)
2 PLN02754 chorismate synthase 100.0 3E-109 7E-114 802.5 28.1 277 1-277 121-397 (413)
3 PRK12463 chorismate synthase; 100.0 3E-109 7E-114 800.2 22.0 281 2-284 105-389 (390)
4 TIGR00033 aroC chorismate synt 100.0 2E-108 5E-113 785.8 26.2 263 1-266 89-351 (351)
5 PF01264 Chorismate_synt: Chor 100.0 3E-109 7E-114 790.2 17.2 257 1-261 89-346 (346)
6 PRK05382 chorismate synthase; 100.0 7E-107 2E-111 777.4 23.5 268 1-278 91-359 (359)
7 cd07304 Chorismate_synthase Ch 100.0 9E-106 2E-110 766.6 24.5 255 1-258 89-344 (344)
8 KOG4492 Chorismate synthase [A 100.0 2.8E-71 6.2E-76 514.1 15.9 272 1-272 96-367 (368)
9 KOG4492 Chorismate synthase [A 99.6 2.8E-18 6.1E-23 160.8 -6.3 177 80-257 191-368 (368)
10 PRK05382 chorismate synthase; 81.9 2.7 5.8E-05 41.8 5.5 130 109-265 8-143 (359)
11 PRK12463 chorismate synthase; 81.2 3.2 6.9E-05 41.7 5.7 71 109-206 6-77 (390)
12 cd07304 Chorismate_synthase Ch 80.7 3.2 7E-05 41.0 5.5 130 109-266 6-143 (344)
13 TIGR00033 aroC chorismate synt 78.8 4 8.6E-05 40.5 5.5 127 109-262 6-138 (351)
14 PF08712 Nfu_N: Scaffold prote 76.4 1.6 3.5E-05 34.6 1.7 31 136-166 35-65 (87)
15 PLN02754 chorismate synthase 70.5 7.8 0.00017 39.3 5.2 76 106-208 35-111 (413)
16 PF01264 Chorismate_synt: Chor 69.9 5.6 0.00012 39.4 4.0 124 109-266 6-142 (346)
17 PLN02948 phosphoribosylaminoim 45.9 34 0.00073 35.8 5.1 65 96-163 451-532 (577)
18 COG0082 AroC Chorismate syntha 40.9 20 0.00043 35.9 2.3 123 109-264 14-148 (369)
19 TIGR02725 phenyl_P_gamma pheny 34.5 29 0.00064 27.2 1.9 45 114-158 17-61 (84)
20 PF00220 Hormone_4: Neurohypop 30.7 19 0.0004 17.9 0.2 9 119-127 1-9 (9)
21 PRK00587 hypothetical protein; 27.8 44 0.00095 27.5 2.0 27 96-123 17-43 (99)
22 PRK09536 btuD corrinoid ABC tr 26.3 1E+02 0.0022 30.9 4.6 79 41-135 280-358 (402)
No 1
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-110 Score=797.93 Aligned_cols=270 Identities=51% Similarity=0.808 Sum_probs=256.9
Q ss_pred CCCCCCCCccccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 1 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
+++.||||||||||+.|||++||||||||||||||+|||||||||+||.+ +||+|.|||++||+++++.. +++
T Consensus 97 ~~~~pRPGHADyty~~KYg~rD~RgggRsSaReTa~rVAaGAvAKk~L~~-~gi~v~~~v~~iG~~~~~~~------~~~ 169 (369)
T COG0082 97 IKDPPRPGHADYTYGIKYGFRDYRGGGRSSARETAARVAAGAVAKKLLRE-LGIEVLGHVVSIGGIEADDS------LDF 169 (369)
T ss_pred cccCCCCCcccchhhhhcCccccCCcccchhHHHHHHHHHHHHHHHHHHh-CCeEEEEeeeeccCCccccc------CCH
Confidence 46889999999999999999999999999999999999999999999999 79999999999999986531 556
Q ss_pred Hhhhc--CcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeeccc
Q 022731 81 DQVES--NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSG 158 (293)
Q Consensus 81 ~~~~~--~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~G 158 (293)
+++++ ||+||||+++.++|+++|+++|++|||+||+|||++.|||+|||+|+||||||+||+||||||||||||||+|
T Consensus 170 ~~~~~~~sp~~~pd~e~~~~m~~~i~~~k~~GDSiGgvvevva~gvP~GLG~pvfdkLda~lA~AlmsI~AvKGVEiG~G 249 (369)
T COG0082 170 EEVEQRASPVRCPDPEAEEEMEELIDKAKKEGDSIGGVVEVVAEGVPAGLGEPVFDKLDAKLAHALMSIPAVKGVEIGDG 249 (369)
T ss_pred HHHhhccCCccCCCHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCCCCCCCcccccchHHHHHHhhCCccceeEEeccc
Confidence 77766 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccC-Cceeeeeccccccc
Q 022731 159 FAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTRE-KKETELIARGRHDP 237 (293)
Q Consensus 159 f~~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~-~~e~~~~~~gRhDp 237 (293)
|++++|+|||+||+|++++ ++.++|||+|||||||||||||++|++|||||||++||+|||++ +++.++.++|||||
T Consensus 250 F~~a~~~GSe~~De~~~~~--~~~~~tN~~GGilGGitnG~pIv~r~a~KPt~SI~kp~~TVd~~t~e~~~~~~kgRhDp 327 (369)
T COG0082 250 FEAARMRGSEANDEITLDG--GIVRKTNNAGGILGGITNGEPIVVRVAFKPTPSIYKPQRTVDLETGEEVEASTKGRHDP 327 (369)
T ss_pred hhhhhcccccccCceeeCC--CeeEccccCCceeccccCCccEEEEEEeCCCCccCccccceEcccCCeeEEEecCcCCC
Confidence 9999999999999999864 89999999999999999999999999999999999999999988 58889999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHccccccccCCCCcccCC
Q 022731 238 CVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTM 279 (293)
Q Consensus 238 Ci~pRa~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~ 279 (293)
|++|||+||+|||+||||||++|++++++....++.+...|+
T Consensus 328 cv~prAvpV~EamvA~vLaD~~L~~~~~~~~~~~~~~~~~~~ 369 (369)
T COG0082 328 CVVPRAVPVVEAMVALVLADHLLRKFGQDPDVELKRRVANYR 369 (369)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhCCCcchhhcccchhcC
Confidence 999999999999999999999999999999888888877653
No 2
>PLN02754 chorismate synthase
Probab=100.00 E-value=3.1e-109 Score=802.46 Aligned_cols=277 Identities=91% Similarity=1.329 Sum_probs=256.1
Q ss_pred CCCCCCCCccccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 1 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
+++.||||||||+|++|||+|||||||||||||||+||||||||||||++.+||+|.|||++||+|++++...+...+++
T Consensus 121 ~~~~pRPGHAD~t~~~KYg~rd~rGGgRsSaReTa~rVaAGaiAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~ 200 (413)
T PLN02754 121 MSVAYRPSHADATYDFKYGVRAVQGGGRSSARETIGRVAAGAVAKKILKQFAGTEILAYVSQVHDVVLPEDLVDHETLTL 200 (413)
T ss_pred hcCCCCCCCcchhHHHhcCCcccCCccccHHHHHHHHHHHHHHHHHHHHhhCCeEEEEEEEEEcCEecccccCCcchhhH
Confidence 35789999999999999999999999999999999999999999999976469999999999999975321112122236
Q ss_pred HhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeeccccc
Q 022731 81 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 160 (293)
Q Consensus 81 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~Gf~ 160 (293)
+++++++++|||++++++|+++|++||++||||||+|||+++|||+|||||+|||||++||+||||||||||||||+||+
T Consensus 201 ~~~~~~~~rc~d~~~~~~m~~~I~~ak~~GDSlGGivev~~~gvP~GLG~pvfdkLda~LA~Al~SIpAVKGVEfG~GF~ 280 (413)
T PLN02754 201 EQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNVPRGLGSPVFDKLEAELAKAMMSLPATKGFEIGSGFA 280 (413)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCcccEEEEEEECCCCCCCccccccchHHHHHHhcCcCceeEEEEccchh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeecccccccccc
Q 022731 161 GTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVV 240 (293)
Q Consensus 161 ~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCi~ 240 (293)
+++|+|||+||+|+++++|+++++|||+|||+|||||||||+||++|||||||.+||+|||+++++++++++||||||++
T Consensus 281 ~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~gRhDpCiv 360 (413)
T PLN02754 281 GTLLTGSEHNDEFYMDEHGRIRTRTNRSGGIQGGISNGEIIVMRIAFKPTSTIGKKQNTVTRDGQETELRARGRHDPCVV 360 (413)
T ss_pred hhhccccccCcceeecCCCceEecccCCCcccccccCCCcEEEEEEeCCCcccccccccccCCCCEeeeeccCCCCcccc
Confidence 99999999999998865678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHccccccccCCCCccc
Q 022731 241 PRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 277 (293)
Q Consensus 241 pRa~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~ 277 (293)
|||+||+|||+||||||++|++++.+....++|++++
T Consensus 361 prA~pV~EAm~AlvLaD~~L~~~~~~~~~~~~~~~~~ 397 (413)
T PLN02754 361 PRAVPMVEAMVALVLVDQLMAQYAQCELFPINPVLQE 397 (413)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCccccccCCCcccc
Confidence 9999999999999999999999997655566666433
No 3
>PRK12463 chorismate synthase; Reviewed
Probab=100.00 E-value=3e-109 Score=800.22 Aligned_cols=281 Identities=37% Similarity=0.514 Sum_probs=261.9
Q ss_pred CCCCCCCccccccccccCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 2 SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 2 ~~~pRPGHAD~t~~~KYg~~D~rGG-gRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
++.||||||||+|++|||++||||| |||||||||+||||||||||||++ +||+|.|||++||+|.++.. .+....++
T Consensus 105 ~~~pRPGHAD~~~~~KYg~~D~Rgglgr~SaReTa~rVaaGavAk~~L~~-~gI~i~s~v~~IG~v~~~~~-~~~~~~~~ 182 (390)
T PRK12463 105 ITKPRPGHADLNGAIKYGHRDIRNVLERSSARETTVRVAAGAVAKQILKE-LGVEIAGHVLEIGGVKAKHI-SNLSIEEI 182 (390)
T ss_pred cCCCCCCCcchhhHHhcCCcccCCCcccchHHHHHHHHHHHHHHHHHHHH-CCEEEEEEEEEECCEecCcc-cccCHHHH
Confidence 5689999999999999999999999 999999999999999999999986 79999999999999975321 01111122
Q ss_pred H-hhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcc-cC-chhHHHHHHhccCCCccceeecc
Q 022731 81 D-QVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV-FD-KLEAELAKAMMSLPATKGFEVGS 157 (293)
Q Consensus 81 ~-~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~-f~-kLda~La~a~mSIpAVKgvE~G~ 157 (293)
. .+++|+++|||++++++|.++|++||++||||||+|||+++|||+|||||+ || |||++||+||||||||||||||+
T Consensus 183 ~~~~~~s~~~c~d~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLGspv~fd~kLda~LA~A~msIpAVKgVE~G~ 262 (390)
T PRK12463 183 QTITENSPVRCLDKTVEQEMMDAIDNAKSSGDSIGGIVEVIAEGMPIGVGSYVHYDRKLDAKLAGAIMSINAFKGAEIGV 262 (390)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEECCCCCCCCCccccccchHHHHHHhcCcCceeEEEEcc
Confidence 2 378999999999999999999999999999999999999999999999999 98 99999999999999999999999
Q ss_pred cccccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeeccccccc
Q 022731 158 GFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDP 237 (293)
Q Consensus 158 Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDp 237 (293)
||++|+++|||+||+|+++++++++++|||+|||+|||||||||+||++|||||||++||+|||+.+++.+...+|||||
T Consensus 263 Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGI~GGISnG~pIv~r~a~KP~pSi~~pq~TVd~~t~e~~~~~~gRhDp 342 (390)
T PRK12463 263 GFEAARQPGSKVHDEILWDEEQGYTRKTNNAGGLEGGMTTGMPIVVRGVMKPIPTLYKPLASVDIDTKEAFQASIERSDS 342 (390)
T ss_pred chhhhhCCCcccCceeEecCCCCeeecccCcccccccccCCCcEEEEEEECCcccccccccCcccCCCceeeecCCCCCC
Confidence 99999999999999999865567999999999999999999999999999999999999999999998888888899999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHccccccccCCCCcccCCCCCCC
Q 022731 238 CVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPEL 284 (293)
Q Consensus 238 Ci~pRa~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~~~~~~ 284 (293)
|++|||+||+|||+||||||++|++|++|++-++|+++..|++.+..
T Consensus 343 c~vprA~~V~Eam~A~vLad~~l~~fg~d~~~~~~~~~~~y~~~~~~ 389 (390)
T PRK12463 343 CAVPAAGVVAESVVAWELAHALVEQFGKDRMELIQQNITQHNKYAKE 389 (390)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999987753
No 4
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=100.00 E-value=2.3e-108 Score=785.82 Aligned_cols=263 Identities=57% Similarity=0.904 Sum_probs=247.8
Q ss_pred CCCCCCCCccccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 1 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
+++.||||||||||++|||++|+||||||||||||+||||||||||||++.+||+|.|||+|||+|+++.. .....++
T Consensus 89 ~~~~pRPGHAD~t~~~KYg~~D~rgggr~SaReTa~rVaaGaiAk~~L~~~~gI~i~s~v~~IG~i~~~~~--~~~~~~~ 166 (351)
T TIGR00033 89 IRTFPRPGHADYTYWLKYGIDDYRGGGRSSARETAARVAAGAVAKKLLAETSGIEIVAYVTQIGEVEIPRV--YYDPEEK 166 (351)
T ss_pred ccCCCCCCCcchhhHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEECCEecCcc--ccchhhH
Confidence 36789999999999999999999999999999999999999999999976469999999999999975421 1112236
Q ss_pred HhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeeccccc
Q 022731 81 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 160 (293)
Q Consensus 81 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~Gf~ 160 (293)
+++++|+++|||+++.++|+++|++||++|||+||+|||+++|||+|||+|+|||||++||+||||||||||||||+||+
T Consensus 167 ~~~~~~~~~~~d~~~~~~m~~~I~~a~~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~La~a~msIpAvKgvE~G~Gf~ 246 (351)
T TIGR00033 167 ERVDSSPVRCPDPEAEKEMVAEIDKAKKDGDSIGGVVECVARNVPVGLGEPLFDKLDARLAHAMMSIPAVKGVEIGDGFE 246 (351)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCCCCCCccccchHHHHHHhcCcCceeEEEECcchh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeecccccccccc
Q 022731 161 GTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVV 240 (293)
Q Consensus 161 ~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCi~ 240 (293)
+++|+|||+||+|++++ ++++++|||+|||+|||||||||+||++|||||||.+||+|||+++++++++++||||||++
T Consensus 247 ~a~~~GSe~nD~~~~~~-~~~~~~tN~~GGI~GGISnG~pIv~r~a~KP~pSI~~~q~TVd~~~~e~~~~~~gRhDpCiv 325 (351)
T TIGR00033 247 LASMRGSEANDEFVFED-GGIRRKTNNSGGILGGITNGEPIRVRIAFKPTPTIGKPQKTVDLDTEEPALATKGRHDPCVV 325 (351)
T ss_pred hccccccccccceEeCC-CceEecCcCcccccccccCCCcEEEEEEeCCCcccccccccccCCCCEeeeecCCCCCcccc
Confidence 99999999999998864 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHcccc
Q 022731 241 PRAVPMVEAMVALVLMDQLMAQHAQC 266 (293)
Q Consensus 241 pRa~pVvEAm~AlvLaD~~L~~~~~~ 266 (293)
|||+||+|||+||||||++|++++.+
T Consensus 326 pra~~V~Eam~AlvLad~~l~~~~~d 351 (351)
T TIGR00033 326 PRAVPVVEAMTALVLADALLEQRASD 351 (351)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998754
No 5
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=100.00 E-value=3.5e-109 Score=790.24 Aligned_cols=257 Identities=53% Similarity=0.832 Sum_probs=228.4
Q ss_pred CCCCCCCCccccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 1 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
+++.||||||||+|++|||++||||||||||||||+||||||||||||++ +||+|.|||++||+|+++. ......++
T Consensus 89 ~~~~pRPGHAD~~~~~KYg~~D~Rgggr~SaReTa~rvaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~~--~~~~~~~~ 165 (346)
T PF01264_consen 89 LKDIPRPGHADYTGFLKYGFRDYRGGGRSSARETAPRVAAGAIAKQLLEE-LGIEIRSHVSSIGGIEDRE--DDPSEEDF 165 (346)
T ss_dssp STSSE-TTSSHHHHHHHHT-SSTHHHHHHSGGHHHHHHHHHHHHHHHHHC-TTEEEEEEEEEETTEEECC--HHHHHHHH
T ss_pred hhhcCCCCcccccceeccCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-CCeEEEEEhheeCCEeccc--ccchhhhh
Confidence 46899999999999999999999999999999999999999999999997 7999999999999999653 12234457
Q ss_pred HhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeeccccc
Q 022731 81 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 160 (293)
Q Consensus 81 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~Gf~ 160 (293)
+++++++++|||++++++|+++|++||++||||||+|||+++|||+|||||+|||||++||+||||||||||||||+||+
T Consensus 166 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~fdkLda~la~al~sIpAvKgvEfG~Gf~ 245 (346)
T PF01264_consen 166 EKIEESPVRCPDPEAEEEMKELIDEAKKEGDSLGGIVEVVATGVPAGLGSPVFDKLDARLAQALMSIPAVKGVEFGDGFE 245 (346)
T ss_dssp HHHHHSTTSBSSHHHHHHHHHHHHHHHHTTGGB-EEEEEEEES--TT-SBSSCCSHHHHHHHHHHTSTTEEEEEETTGGG
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCCCCCCcCcHHHHHHHHhhCCCCeeeEEecCcHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCC-ceeeeeccccccccc
Q 022731 161 GTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREK-KETELIARGRHDPCV 239 (293)
Q Consensus 161 ~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~-~e~~~~~~gRhDpCi 239 (293)
+|+|+|||+||+|++++ ++++++|||+|||+|||||||||+||++|||||||.+||+|||+.+ ++.++.++||||||+
T Consensus 246 ~a~~~GSe~nD~~~~~~-~~~~~~tN~aGGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVdl~~~e~~~~~i~gRhDpci 324 (346)
T PF01264_consen 246 AASMRGSEVNDEIYYDD-GKIKRKTNNAGGILGGISNGMPIVFRVAFKPTPSIAKPQKTVDLKTGEEATLEIKGRHDPCI 324 (346)
T ss_dssp GGGSBHHHHS-SEEECT-TTEEESS-TTTTEETTEEBSS-EEEEEEE--SS--SSCEEEEBTTTSSEEEEC--SSS-SCT
T ss_pred Hhhcchhhcccceeccc-ccccccCCCcccccccccCCceEEEEEEecccccccccccccccCCCCEEEEecCCCCCccc
Confidence 99999999999999975 6899999999999999999999999999999999999999999655 888999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 022731 240 VPRAVPMVEAMVALVLMDQLMA 261 (293)
Q Consensus 240 ~pRa~pVvEAm~AlvLaD~~L~ 261 (293)
+|||+||+|||+||||||++|+
T Consensus 325 vpra~~V~Eam~Alvlad~~Le 346 (346)
T PF01264_consen 325 VPRAVPVVEAMVALVLADALLE 346 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999996
No 6
>PRK05382 chorismate synthase; Validated
Probab=100.00 E-value=7.1e-107 Score=777.41 Aligned_cols=268 Identities=52% Similarity=0.810 Sum_probs=249.0
Q ss_pred CCCCCCCCccccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 1 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
+++.||||||||||++|||++|+||||||||||||+||||||||||||++ +||+|.|||++||+|+++ .+.+.+ .
T Consensus 91 ~~~~pRPGHAD~~~~~KYg~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~---~~~~~~-~ 165 (359)
T PRK05382 91 IKTRPRPGHADYTYFLKYGFRDYRGGGRSSARETAARVAAGAVAKKLLKE-LGIEVRGHVVQIGGIEAD---LDWEEV-E 165 (359)
T ss_pred ccCCCCCCccchhhHhhcCCcccCCcchhhHHHHHHHHHHHHHHHHHHHH-CCeEEEEEEEEEcCCcCC---CCHHHH-H
Confidence 36789999999999999999999999999999999999999999999986 799999999999999753 111111 2
Q ss_pred HhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeeccccc
Q 022731 81 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 160 (293)
Q Consensus 81 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~Gf~ 160 (293)
+++++|+++|||++++++|+++|++||++||||||+|||+++|||+|||||+|||||++||+||||||||||||||+||+
T Consensus 166 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~la~a~msIpAvKgvE~G~Gf~ 245 (359)
T PRK05382 166 ERADANPVRCPDPEAEEEMEELIDEAKKEGDSLGGVVEVVAEGVPAGLGEPVFDKLDADLAHALMSINAVKGVEIGDGFA 245 (359)
T ss_pred hHhhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHhcCcCceeEEEECcchh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCC-ceeeeeccccccccc
Q 022731 161 GTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREK-KETELIARGRHDPCV 239 (293)
Q Consensus 161 ~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~-~e~~~~~~gRhDpCi 239 (293)
+++|+|||+||+|+++ +++|+|||+|||+|||||||||+||++|||||||.+||+|||+.+ ++++++++||||||+
T Consensus 246 ~a~~~GSe~nD~~~~~---~~~~~tN~~GGI~GGISnG~pIv~rva~KP~pSi~~~q~Tvdl~t~e~~~~~~~gRhDpci 322 (359)
T PRK05382 246 AARLRGSEVNDEIYYT---GIGRLTNHAGGILGGISNGEPIVVRVAFKPTPSIRKPQRTVDIRTGEPTELATKGRHDPCV 322 (359)
T ss_pred hccccCcccCceeecC---CCeecccCCCCccccccCCCcEEEEEEecCcchhcccccCcccccCCeeeeccCCCCCCEe
Confidence 9999999999999752 489999999999999999999999999999999999999999666 555999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHccccccccCCCCcccC
Q 022731 240 VPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGT 278 (293)
Q Consensus 240 ~pRa~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~ 278 (293)
+|||+||+|||+||||||++|++ .+++..+++++..|
T Consensus 323 vpra~~V~Eam~A~vLad~~l~~--~~~~~~~~~~~~~~ 359 (359)
T PRK05382 323 VPRAVPVAEAMVALVLADHLLRK--RDQLGEVKRNVPRY 359 (359)
T ss_pred ecchHHHHHHHHHHHHHHHHHHc--CCchhhHhhcccCC
Confidence 99999999999999999999998 56888888888766
No 7
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=100.00 E-value=9.2e-106 Score=766.58 Aligned_cols=255 Identities=57% Similarity=0.851 Sum_probs=240.7
Q ss_pred CCCCCCCCccccccccccCC-CCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCccccccc
Q 022731 1 MSVAYRPSHADATYDMKYGV-RSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLT 79 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~-~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~ 79 (293)
+++.||||||||+|++|||+ +|+||||||||||||+||||||||||||++ +||+|.|||++||+|+++..... ....
T Consensus 89 ~~~~pRPGHAD~~~~~KYg~~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~~~~~~-~~~~ 166 (344)
T cd07304 89 LKTLPRPGHADYTGFLKYGGFDDRRGGGRSSARETAARVAAGAVAKKLLKE-FGIEVVAHVKSIGGIEDEPFDLD-EEEL 166 (344)
T ss_pred ccCCCCCCccccchhhccCCccccCccchhHHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECCEecCccccc-chhh
Confidence 36789999999999999987 999999999999999999999999999988 69999999999999986532111 1112
Q ss_pred HHhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeecccc
Q 022731 80 LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGF 159 (293)
Q Consensus 80 ~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~Gf 159 (293)
++++++++++|||++++++|+++|++||++||||||+|||+++|||+|||||+|||||++||+||||||||||||||+||
T Consensus 167 ~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~klda~la~a~~sIpAvKgve~G~Gf 246 (344)
T cd07304 167 LEEAEESPVRCPDPEAEEKMKELIDEAKKEGDSVGGVVEVVATGVPAGLGSPVFDKLDARLAQALMSIPAVKGVEIGSGF 246 (344)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHhcCcCceeEEEECcch
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeeccccccccc
Q 022731 160 AGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCV 239 (293)
Q Consensus 160 ~~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCi 239 (293)
++++++|||+||+|++++ ++++++|||+|||+|||||||||+||++|||||||.++|+|||+++++++++++||||||+
T Consensus 247 ~~a~~~GSe~nD~~~~~~-~~~~~~TN~aGGI~GGISnG~pIv~rva~KP~pSi~~~q~Tvd~~~~~~~~~~~gRhDpci 325 (344)
T cd07304 247 EAARMRGSEVNDEIYYDE-GGIKTKTNNAGGILGGISNGEPIVFRVAFKPTPSIAKPQKTVDLTGEETELAVKGRHDPCA 325 (344)
T ss_pred hhhhccCcccCcceeeCC-CceeecccCccCccccccCCCcEEEEEEeCCCccccccccceeCCCCEeeeecCCCCCcCc
Confidence 999999999999999875 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHH
Q 022731 240 VPRAVPMVEAMVALVLMDQ 258 (293)
Q Consensus 240 ~pRa~pVvEAm~AlvLaD~ 258 (293)
+|||+||+|||+||||||+
T Consensus 326 vpra~~V~Eam~A~vlad~ 344 (344)
T cd07304 326 VPRAVPVVEAMVALVLADA 344 (344)
T ss_pred ccccHHHHHHHHHHHHhcC
Confidence 9999999999999999995
No 8
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-71 Score=514.12 Aligned_cols=272 Identities=88% Similarity=1.311 Sum_probs=261.6
Q ss_pred CCCCCCCCccccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 1 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
|-..|||+||||||..|||..-..||||||||||+.|||+||||+|+|++.+|++|.+||+|||.|.++....+.+...+
T Consensus 96 MD~~PRPSHAD~TY~EKYGvKASSGGGRsSARETIGRVA~GAiAeK~L~q~~gvEIvAfVsqvg~i~~p~~~~d~e~~T~ 175 (368)
T KOG4492|consen 96 MDVAPRPSHADATYDEKYGVKASSGGGRSSARETIGRVAPGALAKKILKQFAGTEILAYVSQVHHVVLPEELVDHENLTL 175 (368)
T ss_pred hccCCCCcccccchhhhcCeeeccCCCchhhhhhhhccCchHHHHHHHHHhcCceEEeEecccceEecchhhcCcchhhh
Confidence 34679999999999999999999999999999999999999999999999999999999999999998866566677778
Q ss_pred HhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeeccccc
Q 022731 81 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 160 (293)
Q Consensus 81 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~Gf~ 160 (293)
+++++++++|||++.+++|.+.|++.+-++||+||++.|++.|.|-|||+|+||||++.|+++|||+|+-||+|||+||.
T Consensus 176 E~~~~~~~rcpn~~~ae~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la~a~~s~pa~Kgfe~gsgf~ 255 (368)
T KOG4492|consen 176 EQIENNIVRCPNPEYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFA 255 (368)
T ss_pred hhhcccceeCCCHHHHHHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHHHHhcCCcchhhhhhhccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeecccccccccc
Q 022731 161 GTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVV 240 (293)
Q Consensus 161 ~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCi~ 240 (293)
.....|+++||+|+.+..+.++++||++||++||||||+-|.+++.|||+.||...|.|+-.++.+.++..+||||||++
T Consensus 256 g~~~~g~~hnd~fy~ee~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~t~t~dk~e~~~~a~grhdp~v~ 335 (368)
T KOG4492|consen 256 GTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVTRDKVETEMIARGRHDPCVV 335 (368)
T ss_pred eeccccccccCcccccccccceeecccccccccccccceeeeeeccccccccccceeeeeeccCcceeEeeccccCcccC
Confidence 99999999999999887778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHccccccccCC
Q 022731 241 PRAVPMVEAMVALVLMDQLMAQHAQCHLFPIN 272 (293)
Q Consensus 241 pRa~pVvEAm~AlvLaD~~L~~~~~~~~~~~~ 272 (293)
||++|.+|||+|++|+|.+|.+...+..+++.
T Consensus 336 pravp~veam~alvlvd~l~~q~a~~~~~~v~ 367 (368)
T KOG4492|consen 336 PRAVPMVEAMVALVLVDQLMAQYAQCHLFPIN 367 (368)
T ss_pred ccchhhhhhhccceehhHHHHHHHHhhccccC
Confidence 99999999999999999999999988877764
No 9
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=99.64 E-value=2.8e-18 Score=160.77 Aligned_cols=177 Identities=5% Similarity=-0.202 Sum_probs=162.3
Q ss_pred HHhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeecccc
Q 022731 80 LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGF 159 (293)
Q Consensus 80 ~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~Gf 159 (293)
.+.+.....+|+....+-.|...+..++...|+.++.+.|+..+||-|++||.|+|+++.+|+++|++++-|-.+.|.+|
T Consensus 191 ae~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la~a~~s~pa~Kgfe~gsgf~g~~~~g~~hnd~fy~ 270 (368)
T KOG4492|consen 191 AEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAGTFLTGLEHNDEFYT 270 (368)
T ss_pred HHHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHHHHhcCCcchhhhhhhccceeeccccccccCcccc
Confidence 34556666899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccccccee-cCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeecccccccc
Q 022731 160 AGTFLTGSEHNDEFYT-DEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPC 238 (293)
Q Consensus 160 ~~a~~~GSe~nD~~~~-~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpC 238 (293)
+ .+-+++..||.++- ++.+.....+|+++|+.+++|+|+...+-..+|-..+|.-.|++--..+....+.+++|||+|
T Consensus 271 e-e~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~t~t~dk~e~~~~a~grhdp~v~pravp~veam~alv 349 (368)
T KOG4492|consen 271 D-ENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALV 349 (368)
T ss_pred c-ccccceeecccccccccccccceeeeeeccccccccccceeeeeeccCcceeEeeccccCcccCccchhhhhhhccce
Confidence 9 88899999998853 333457789999999999999999999999999999999999988888888999999999999
Q ss_pred cccchhHHHHHHHHHHHHH
Q 022731 239 VVPRAVPMVEAMVALVLMD 257 (293)
Q Consensus 239 i~pRa~pVvEAm~AlvLaD 257 (293)
++||+.|.+|+|.++++.|
T Consensus 350 lvd~l~~q~a~~~~~~v~~ 368 (368)
T KOG4492|consen 350 LVDQLMAQYAQCHLFPINP 368 (368)
T ss_pred ehhHHHHHHHHhhccccCC
Confidence 9999999999999988753
No 10
>PRK05382 chorismate synthase; Validated
Probab=81.91 E-value=2.7 Score=41.78 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=71.9
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|+|+||= + .+.|+..|..-- +|.-.-.-...+. +.+...
T Consensus 8 fGESHG~aig~vIdG~PaGl~--i~~e~i~~~L~RR~--------------------pG~~~~~t~R~E~-D~v~il--- 61 (359)
T PRK05382 8 FGESHGPALGAVIDGCPAGLP--LTEEDIQKELDRRR--------------------PGYSRGTTMRIEP-DEVEIL--- 61 (359)
T ss_pred EecCCCCeeEEEEcCCCCCCE--eCHHHHHHHHHccC--------------------CCCCCCCCCCCCC-CceEEe---
Confidence 589999999999999999985 5 567777776432 1211100111111 233332
Q ss_pred CccccccccCCCceEEEEeeccCCcc-cccccccccCC-ceee-eecccccccccccchhHHHHH--HHHHHHHHHHHHH
Q 022731 188 SGGIQGGISNGEIINMRIAFKPTSTI-GRKQNTVTREK-KETE-LIARGRHDPCVVPRAVPMVEA--MVALVLMDQLMAQ 262 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~KPtpSI-~~~q~TVd~~~-~e~~-~~~~gRhDpCi~pRa~pVvEA--m~AlvLaD~~L~~ 262 (293)
.|+-.|.|+|.||-+.+.=+-+-|- +....++-.-+ -.-+ ..-+|-.|--..=|++-=--| ++|=.||..+|.+
T Consensus 62 -SGv~~g~TtG~PI~~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~d~~gggr~SaReTa~rVaaGaiAk~~L~~ 140 (359)
T PRK05382 62 -SGVFEGKTTGTPIALLIRNTDQRSKDYSEIKTRPRPGHADYTYFLKYGFRDYRGGGRSSARETAARVAAGAVAKKLLKE 140 (359)
T ss_pred -ecccCCCcCCCCeEEEEECCCCCCcchhhccCCCCCCccchhhHhhcCCcccCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999876322211 12222211111 0111 112355566666665533222 3556778888875
Q ss_pred ccc
Q 022731 263 HAQ 265 (293)
Q Consensus 263 ~~~ 265 (293)
++.
T Consensus 141 ~gI 143 (359)
T PRK05382 141 LGI 143 (359)
T ss_pred CCe
Confidence 543
No 11
>PRK12463 chorismate synthase; Reviewed
Probab=81.16 E-value=3.2 Score=41.71 Aligned_cols=71 Identities=21% Similarity=0.426 Sum_probs=46.7
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|||+||= + .+.|+..|..--. |.-----...+ .+.+..
T Consensus 6 ~GESHG~~ig~VIdG~PaGl~--l~~e~I~~~L~RR~p--------------------G~~~~~t~r~E-~D~v~i---- 58 (390)
T PRK12463 6 AGESHGPQLTVILEGVPAGLT--LAAEHINKELLRRQK--------------------GHGRGRRMQIE-TDTVEI---- 58 (390)
T ss_pred cccCCCceeEEEEcCCCCCCc--cCHHHHHHHHhccCC--------------------CCCCCCCCCCC-CCceEE----
Confidence 589999999999999999985 4 4667766654321 11000001111 122332
Q ss_pred CccccccccCCCceEEEEe
Q 022731 188 SGGIQGGISNGEIINMRIA 206 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a 206 (293)
..|+-.|.|+|.||-+.+.
T Consensus 59 lSGv~~G~TtGtPI~~~I~ 77 (390)
T PRK12463 59 VSGVRHGMTLGSPITLIVK 77 (390)
T ss_pred eecccCCCcCCCCeEEEEE
Confidence 2689999999999999983
No 12
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=80.68 E-value=3.2 Score=41.00 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=70.4
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCC-cccccceecCCCCeeeccC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGS-EHNDEFYTDEFGNIRTRTN 186 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GS-e~nD~~~~~~~~~i~~~tN 186 (293)
-|+|-|-.+-|++.|+|+||= + .+.|+..|..-- .|. .... ...+. +.+..
T Consensus 6 fGESHG~~ig~vIdG~PaGl~--i~~e~i~~~L~RR~--------------------pG~~~~~t-~R~E~-D~v~i--- 58 (344)
T cd07304 6 FGESHGPALGVVIDGCPAGLP--LDEEDIQKELDRRR--------------------PGQGRGTT-PRIEK-DEVEI--- 58 (344)
T ss_pred eecCCCCeeEEEEccCCCCCE--eCHHHHHHHHHccC--------------------CCCCCCCC-CCCCC-CceEE---
Confidence 489999999999999999985 5 577777776532 221 1111 11111 23333
Q ss_pred CCccccccccCCCceEEEEeeccCCccccc-ccccccCC-ceeeeec-ccc-cccccccchhHHHHH--HHHHHHHHHHH
Q 022731 187 RSGGIQGGISNGEIINMRIAFKPTSTIGRK-QNTVTREK-KETELIA-RGR-HDPCVVPRAVPMVEA--MVALVLMDQLM 260 (293)
Q Consensus 187 ~~GGI~GGISnG~pIv~r~a~KPtpSI~~~-q~TVd~~~-~e~~~~~-~gR-hDpCi~pRa~pVvEA--m~AlvLaD~~L 260 (293)
..|+..|.|+|.||.+.+.=|=.-|-.-. ..++=.-+ -.-+... +|- .|--..=|++-=.-| ++|=.||..+|
T Consensus 59 -lSGv~~g~TtGtPI~~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~~d~~gggr~SaReTa~rVaaGaiAk~~L 137 (344)
T cd07304 59 -LSGVFEGKTTGTPIALLIRNKDQRSWDYSMLKTLPRPGHADYTGFLKYGGFDDRRGGGRSSARETAARVAAGAVAKKLL 137 (344)
T ss_pred -eecccCCCcCCCCEEEEEEcCCCCCcchhhccCCCCCCccccchhhccCCccccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 26888999999999999855443331100 01110111 1111122 233 344444444332222 35667888888
Q ss_pred HHcccc
Q 022731 261 AQHAQC 266 (293)
Q Consensus 261 ~~~~~~ 266 (293)
.+++..
T Consensus 138 ~~~gI~ 143 (344)
T cd07304 138 KEFGIE 143 (344)
T ss_pred HHCCcE
Confidence 776543
No 13
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=78.85 E-value=4 Score=40.48 Aligned_cols=127 Identities=21% Similarity=0.290 Sum_probs=71.3
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|+|+||= + .+.|+..|..-= .|+-.-.-...+ .+.+..
T Consensus 6 fGESHG~aig~vIdG~PaGl~--l~~e~i~~~L~RR~--------------------pG~~~~~t~R~E-~D~v~i---- 58 (351)
T TIGR00033 6 FGESHGKAVGAIIDGCPAGLP--LTEEDIQPDLDRRR--------------------PGYSRGTRMRKE-NDEVEI---- 58 (351)
T ss_pred eecCCCCeeEEEEccCCCCCE--eCHHHHHHHHHccC--------------------CCCCCCCCCCCC-CCceEE----
Confidence 489999999999999999985 4 466666665422 222111111111 123333
Q ss_pred CccccccccCCCceEEEEeeccCCcc-cccccccccCC-ce-eeeecccccccccccchhHHHHH--HHHHHHHHHHHHH
Q 022731 188 SGGIQGGISNGEIINMRIAFKPTSTI-GRKQNTVTREK-KE-TELIARGRHDPCVVPRAVPMVEA--MVALVLMDQLMAQ 262 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~KPtpSI-~~~q~TVd~~~-~e-~~~~~~gRhDpCi~pRa~pVvEA--m~AlvLaD~~L~~ 262 (293)
..|+..|.|+|.||-+.+.=|=..|= +.+..++-.-+ -. +...-+|-+|--..=|++-=--| ++|=+||..+|++
T Consensus 59 lSGv~~g~TtGtPI~~~I~N~d~~s~dy~~~~~~pRPGHAD~t~~~KYg~~D~rgggr~SaReTa~rVaaGaiAk~~L~~ 138 (351)
T TIGR00033 59 LSGVFEGKTTGAPIALMIRNKDVRSSDYSDIRTFPRPGHADYTYWLKYGIDDYRGGGRSSARETAARVAAGAVAKKLLAE 138 (351)
T ss_pred eecccCCCcCCCCEEEEEEcCCCCcccchhccCCCCCCCcchhhHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 26899999999999999976642221 12222222211 11 11122466775555555432222 3455678888865
No 14
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=76.45 E-value=1.6 Score=34.61 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=24.5
Q ss_pred hhHHHHHHhccCCCccceeecccccccccCC
Q 022731 136 LEAELAKAMMSLPATKGFEVGSGFAGTFLTG 166 (293)
Q Consensus 136 Lda~La~a~mSIpAVKgvE~G~Gf~~a~~~G 166 (293)
-++-||.+||.|++||+|.+|.-|=......
T Consensus 35 ~~spLA~~Lf~i~gV~~Vf~~~dfItVtK~~ 65 (87)
T PF08712_consen 35 SDSPLAQALFAIPGVKSVFIGDDFITVTKNP 65 (87)
T ss_dssp TS-HHHHHHHTSTTEEEEEEETTEEEEEE-T
T ss_pred ccCHHHHHhcCCCCEeEEEEECCEEEEeeCC
Confidence 3578999999999999999999886655533
No 15
>PLN02754 chorismate synthase
Probab=70.54 E-value=7.8 Score=39.27 Aligned_cols=76 Identities=20% Similarity=0.399 Sum_probs=49.7
Q ss_pred HHHcCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeec
Q 022731 106 VRVRGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTR 184 (293)
Q Consensus 106 ak~~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~ 184 (293)
.---|+|-|-.+-|++.|+|+||= + .+.|+..|..-- .|.-.-.-...+. +.+..
T Consensus 35 ~ttfGESHG~aig~VIdG~PaGl~--i~~e~I~~~L~RRr--------------------pG~~~~~t~R~E~-D~veI- 90 (413)
T PLN02754 35 VTTFGESHGGGVGCVIDGCPPRIP--LTEEDMQFDLDRRR--------------------PGQSRITTPRKET-DTCEI- 90 (413)
T ss_pred EEEEecCCCCeeEEEEcccCCCCE--eCHHHHHHHHhccC--------------------CCCCCCCcCCCCC-CceEE-
Confidence 455799999999999999999985 4 466666665432 2221111111111 22222
Q ss_pred cCCCccccccccCCCceEEEEeec
Q 022731 185 TNRSGGIQGGISNGEIINMRIAFK 208 (293)
Q Consensus 185 tN~~GGI~GGISnG~pIv~r~a~K 208 (293)
..|+-.|.|+|.||-+-+.=|
T Consensus 91 ---lSGv~~G~TtGtPIa~~I~N~ 111 (413)
T PLN02754 91 ---LSGVSEGMTLGTPIAVFVPNT 111 (413)
T ss_pred ---eecccCCCcCCCCeEEEEEcC
Confidence 268899999999999998655
No 16
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=69.86 E-value=5.6 Score=39.39 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=65.5
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|=.+-|++.|||+||= + .+.|+..|..--- |.-.-.-...+. +.+...
T Consensus 6 fGESHG~aig~vIdG~PaGl~--i~~e~i~~~L~RR~p--------------------G~~~~~t~R~E~-D~v~il--- 59 (346)
T PF01264_consen 6 FGESHGPAIGVVIDGCPAGLP--IDEEDIQKELDRRRP--------------------GYGRGTTMRKEK-DEVEIL--- 59 (346)
T ss_dssp EESTTSSEEEEEEES--BTEB----HHHHHHHHHHHTC--------------------STTCCCCHHHCS-CEEEEE---
T ss_pred eecCCCCeeEEEEcCCCCCCc--cCHHHHHHHHHhcCC--------------------CCCCCCCCCCCC-CeEEEE---
Confidence 488999999999999999985 5 5777777765431 211000111111 223222
Q ss_pred CccccccccCCCceEEEEeeccCCcccccccccccCCceee----------eecccccccccccchhHHHH--HHHHHHH
Q 022731 188 SGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETE----------LIARGRHDPCVVPRAVPMVE--AMVALVL 255 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~----------~~~~gRhDpCi~pRa~pVvE--Am~AlvL 255 (293)
.|+..|.|+|.||-+-+.-+=. ++-|++..... ..-+|-.|.-=.=|++-=.- =++|=+|
T Consensus 60 -SGv~~g~TtG~PI~~~I~N~d~-------~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~Rgggr~SaReTa~rvaaGai 131 (346)
T PF01264_consen 60 -SGVFEGKTTGAPIAMIIRNKDQ-------RSWDYEELKDIPRPGHADYTGFLKYGFRDYRGGGRSSARETAPRVAAGAI 131 (346)
T ss_dssp -ESEETTEEESS-EEEEEE-TTC-------HHCTTCTSTSSE-TTSSHHHHHHHHT-SSTHHHHHHSGGHHHHHHHHHHH
T ss_pred -eceECCEeCCCCeEEEEECCCC-------CCcchhhhhhcCCCCcccccceeccCCcCCcchhhhHHHHHHHHHHHHHH
Confidence 6899999999999998876533 33332221111 11235445433333322111 1355677
Q ss_pred HHHHHHHcccc
Q 022731 256 MDQLMAQHAQC 266 (293)
Q Consensus 256 aD~~L~~~~~~ 266 (293)
|..+|+.++..
T Consensus 132 Ak~~L~~~gI~ 142 (346)
T PF01264_consen 132 AKQLLEELGIE 142 (346)
T ss_dssp HHHHHHCTTEE
T ss_pred HHHHHHhCCeE
Confidence 88888876643
No 17
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=45.92 E-value=34 Score=35.81 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCc---------------cCcEEEEEEEeCCCCcCCcccCchhHHHHHHhc--cCCCccceeeccc
Q 022731 96 AEKMIAAIDAVRVRGDS---------------VGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSG 158 (293)
Q Consensus 96 ~~~m~~~I~~ak~~gDS---------------lGGvve~~~~gvP~GLG~p~f~kLda~La~a~m--SIpAVKgvE~G~G 158 (293)
-+++.+++.++.+.|.. +.|...+=|.|||...| -++.+|+.|+-.-| ++| |-=|-++.|
T Consensus 451 ~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~--~~~g~~~l~s~~~~p~g~p-v~~v~i~~~ 527 (577)
T PLN02948 451 PERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTS--HLDGLDSLLSIVQMPRGVP-VATVAIGNA 527 (577)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCC--CCCcHHHHHHHhcCCCCCe-EEEEecCCh
Confidence 34577788888877753 22333445678888777 67899999999999 999 888888888
Q ss_pred ccccc
Q 022731 159 FAGTF 163 (293)
Q Consensus 159 f~~a~ 163 (293)
|.++-
T Consensus 528 ~~aa~ 532 (577)
T PLN02948 528 TNAGL 532 (577)
T ss_pred HHHHH
Confidence 76653
No 18
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=40.90 E-value=20 Score=35.95 Aligned_cols=123 Identities=19% Similarity=0.248 Sum_probs=63.8
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRS 188 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~~ 188 (293)
-|+|-|-.+-|+|.|||+||= +- ++.|-.-|- -++.|....--...+. +.+...
T Consensus 14 ~GESHG~alg~VIdG~PaGl~--l~---~edIq~eL~----------------RRrpG~~r~~t~R~E~-D~veIl---- 67 (369)
T COG0082 14 FGESHGPALGAVIDGCPAGLE--LS---EEDIQKELD----------------RRRPGYSRGTTMRKEK-DEVEIL---- 67 (369)
T ss_pred ecccCCCeeEEEEeccCCCCc--cC---HHHHHHHHH----------------hcCCCCCCCcccccCC-cceEEe----
Confidence 589999999999999999985 21 222332221 1222311111111111 223222
Q ss_pred ccccccccCCCceEEEEeeccCCcccccccccccCC-c--------eeeee-cccccccccccchhHHHHH--HHHHHHH
Q 022731 189 GGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREK-K--------ETELI-ARGRHDPCVVPRAVPMVEA--MVALVLM 256 (293)
Q Consensus 189 GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~-~--------e~~~~-~~gRhDpCi~pRa~pVvEA--m~AlvLa 256 (293)
-|+-=|.|||-||-+-+-=|= |++-|+.. + .-+.. -+|=-|.--+-|++-=--+ ++|=++|
T Consensus 68 SGv~~G~TtGtPI~l~I~N~d-------~~s~~y~~~~~~pRPGHADyty~~KYg~rD~RgggRsSaReTa~rVAaGAvA 140 (369)
T COG0082 68 SGVFEGKTTGTPIALLIENTD-------QRSKDYSMIKDPPRPGHADYTYGIKYGFRDYRGGGRSSARETAARVAAGAVA 140 (369)
T ss_pred eeeecCccCCCceEEEEEcCC-------CCccchhhcccCCCCCcccchhhhhcCccccCCcccchhHHHHHHHHHHHHH
Confidence 477778999999988765332 22222111 0 01111 1344455555555433222 3566788
Q ss_pred HHHHHHcc
Q 022731 257 DQLMAQHA 264 (293)
Q Consensus 257 D~~L~~~~ 264 (293)
..+|.+.+
T Consensus 141 Kk~L~~~g 148 (369)
T COG0082 141 KKLLRELG 148 (369)
T ss_pred HHHHHhCC
Confidence 88888853
No 19
>TIGR02725 phenyl_P_gamma phenylphosphate carboxylase, gamma subunit. Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologs.
Probab=34.49 E-value=29 Score=27.17 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=42.1
Q ss_pred CcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeeccc
Q 022731 114 GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSG 158 (293)
Q Consensus 114 GGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~G 158 (293)
|--.|+.++-+-+||-.+.|.++.+.++-|+-..|.---|.||.|
T Consensus 17 gk~lelsvrtlnpglkkytyqrv~ae~s~aldkfpdqlqvr~grg 61 (84)
T TIGR02725 17 GKELELSVRTLNPGLKKYTYQRVKAELSNALDKFPDQLQVRFGRG 61 (84)
T ss_pred CceEEEEEeecCccHHHHHHHHHHHHhhhhhhhCcHhheeeeccC
Confidence 556799999999999999999999999999999999999999988
No 20
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=30.68 E-value=19 Score=17.88 Aligned_cols=9 Identities=67% Similarity=1.689 Sum_probs=6.7
Q ss_pred EEEEeCCCC
Q 022731 119 CIVRNCPRG 127 (293)
Q Consensus 119 ~~~~gvP~G 127 (293)
|.++|+|.|
T Consensus 1 C~i~nCP~G 9 (9)
T PF00220_consen 1 CYIRNCPIG 9 (9)
T ss_pred CccccCCCC
Confidence 567888876
No 21
>PRK00587 hypothetical protein; Provisional
Probab=27.79 E-value=44 Score=27.46 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCccCcEEEEEEEe
Q 022731 96 AEKMIAAIDAVRVRGDSVGGVVTCIVRN 123 (293)
Q Consensus 96 ~~~m~~~I~~ak~~gDSlGGvve~~~~g 123 (293)
.+++.+.|.+..-+|.+ ||.|+|+++|
T Consensus 17 m~~~QeeL~~~~v~g~~-gGlVkV~~nG 43 (99)
T PRK00587 17 MEKKQKEFEEKEFDFDY-KKYILIKIKG 43 (99)
T ss_pred HHHHHHHHhccEEEEEc-CCeEEEEEEc
Confidence 34455666666667888 9999999986
No 22
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=26.29 E-value=1e+02 Score=30.89 Aligned_cols=79 Identities=8% Similarity=0.035 Sum_probs=55.3
Q ss_pred HHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccHHhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEE
Q 022731 41 GAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 120 (293)
Q Consensus 41 GaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~ 120 (293)
..+.++|++. |+.|.+-|..-+++... .......+-+.+.||.-.+++..++..+.|++|. .|+
T Consensus 280 ~~~~~~L~~~--g~~v~~g~l~~~d~d~~----~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~----------~vi 343 (402)
T PRK09536 280 ARAVSRLVAA--GASVSVGPVPEGDTAAE----TAARVGCEAVTVPPFKPIEDSTRAEATDLIIAAD----------AVV 343 (402)
T ss_pred HHHHHHHHHC--CCeEEEecCcCcchhHH----HHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCC----------EEE
Confidence 3466777754 99999888766654311 0111222445678888899999999999988875 478
Q ss_pred EEeCCCCcCCcccCc
Q 022731 121 VRNCPRGLGSPVFDK 135 (293)
Q Consensus 121 ~~gvP~GLG~p~f~k 135 (293)
..|+|.|-++++-..
T Consensus 344 ~~~~~~g~~~~~~~~ 358 (402)
T PRK09536 344 AAGVAAAARSGVIGL 358 (402)
T ss_pred ECCCccCCCCCchhe
Confidence 899999999887544
Done!