Query 022731
Match_columns 293
No_of_seqs 109 out of 1050
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ecd_A Chorismate synthase; 4- 100.0 2E-113 6E-118 828.8 13.6 284 2-285 110-396 (398)
2 1qxo_A Chorismate synthase; be 100.0 2E-112 7E-117 819.3 16.6 281 2-284 103-387 (388)
3 2o11_A Chorismate synthase; sh 100.0 1E-112 5E-117 823.7 13.5 285 3-289 109-396 (407)
4 1q1l_A Chorismate synthase; be 100.0 2E-111 7E-116 814.3 13.4 280 4-284 111-400 (401)
5 1r53_A Chorismate synthase; tw 100.0 2E-110 6E-115 804.2 17.8 268 1-269 96-372 (382)
6 1sq1_A Chorismate synthase; st 100.0 4E-109 1E-113 791.1 18.1 257 1-266 95-351 (370)
7 1um0_A Chorismate synthase; be 100.0 5E-108 2E-112 781.6 23.7 253 1-266 96-354 (365)
8 2k1h_A Uncharacterized protein 88.1 0.19 6.6E-06 39.7 1.8 28 137-164 38-65 (94)
9 1pqx_A Conserved hypothetical 81.3 0.51 1.7E-05 37.0 1.3 28 137-164 38-65 (91)
10 4ecd_A Chorismate synthase; 4- 78.7 3.3 0.00011 40.3 6.3 74 109-209 10-84 (398)
11 1r53_A Chorismate synthase; tw 77.4 3.7 0.00013 39.8 6.2 73 109-208 13-86 (382)
12 2o11_A Chorismate synthase; sh 76.8 3.2 0.00011 40.5 5.6 73 109-208 7-80 (407)
13 1q1l_A Chorismate synthase; be 76.0 3.3 0.00011 40.4 5.5 73 109-208 14-87 (401)
14 2ltm_A NFU1 iron-sulfur cluste 77.2 0.59 2E-05 37.7 0.0 29 136-164 47-75 (107)
15 1um0_A Chorismate synthase; be 75.1 4 0.00014 39.3 5.7 122 109-264 13-147 (365)
16 2ltl_A NIFU-like protein, mito 69.4 1.3 4.3E-05 36.5 0.0 29 137-165 60-89 (119)
17 1qxo_A Chorismate synthase; be 40.3 15 0.00051 35.7 2.8 73 109-208 6-79 (388)
18 3lp6_A Phosphoribosylaminoimid 40.2 64 0.0022 27.9 6.5 63 98-163 50-129 (174)
19 1sq1_A Chorismate synthase; st 34.8 17 0.00058 35.1 2.2 121 109-264 13-146 (370)
20 4hhu_A OR280; engineered prote 28.5 1E+02 0.0035 25.7 5.6 67 45-128 63-135 (170)
21 1o4v_A Phosphoribosylaminoimid 20.6 32 0.0011 30.1 1.1 38 122-162 95-134 (183)
No 1
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=100.00 E-value=1.8e-113 Score=828.80 Aligned_cols=284 Identities=33% Similarity=0.441 Sum_probs=188.5
Q ss_pred CCCCCCCccccccccccCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 2 SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 2 ~~~pRPGHAD~t~~~KYg~~D~rGG-gRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
++.||||||||||++|||++||||| |||||||||+||||||||||||++.+||+|.|||++||+|+++....+....++
T Consensus 110 ~~~pRPGHAD~t~~~KYG~~D~RgglgRsSaRETa~RVAaGAiAk~~L~~~~GI~i~s~v~~iG~i~~~~~~~~~~~~~~ 189 (398)
T 4ecd_A 110 LSRPRPGHADLTGMRKYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFGIRTVAHVVALGGVQTNPDLPLPTPDDL 189 (398)
T ss_dssp -------------------------------CCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEETTEECCSSSCCCCGGGH
T ss_pred cCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEEcCEEcccccCCCCHHHH
Confidence 4679999999999999999999999 999999999999999999999987459999999999999997532112345667
Q ss_pred HhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCccc--CchhHHHHHHhccCCCccceeeccc
Q 022731 81 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF--DKLEAELAKAMMSLPATKGFEVGSG 158 (293)
Q Consensus 81 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f--~kLda~La~a~mSIpAVKgvE~G~G 158 (293)
+++++|+|||||++++++|+++|+++|++|||+||+|||+++|||+|||||+| ||||++||+||||||||||||||+|
T Consensus 190 ~~~~~~~~rc~d~~~~~~m~~~I~~ak~~gDS~GGvve~v~~gvP~GLG~pvf~d~kLda~LA~A~mSI~AvKGvEiG~G 269 (398)
T 4ecd_A 190 EALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGIGTYVESDRRLDAALASAIMGIQAFKGVEIGDG 269 (398)
T ss_dssp HHHHHSTTSCSCHHHHHHHHHHHHTC--CGGGCCEEEEEEEESCCSCCBCSSSSTTSHHHHHHHHHHTSTTEEEEEETTT
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEEcCCCCCCCCcccccChhHHHHHHhcCcCceeeEEecch
Confidence 88999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeecccccccc
Q 022731 159 FAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPC 238 (293)
Q Consensus 159 f~~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpC 238 (293)
|++++++|||+||+|+++++|.++++|||+|||+|||||||||+||++|||||||.+||+|||+++++.+...+||||||
T Consensus 270 F~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~TVd~~~~e~~~~~~gRhDpC 349 (398)
T 4ecd_A 270 FLAASRPGSQAHDEIVVNADGRIDRLSNRAGGIEGGMSNGQVIRVRGAMKPIPSIPKALRTVDVLTGESAQAINQRSDST 349 (398)
T ss_dssp TTC-------------------------CCCSEETTEECSSCEEEEEEECC-------------------------CCBC
T ss_pred HhhhhccccccccceeecCCCceeecccCCcCccccccCCCcEEEEEEecCcccccccccceecCCCCeeeccCCCCCcc
Confidence 99999999999999987644459999999999999999999999999999999999999999999988888889999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHccccccccCCCCcccCCCCCCCC
Q 022731 239 VVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELE 285 (293)
Q Consensus 239 i~pRa~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (293)
++|||+||+|||+||||||++|++++++++.++++++++|++.++.+
T Consensus 350 vvprA~pV~EAm~AlvLad~~L~~~g~d~~~e~~~~~~~y~~~~~~~ 396 (398)
T 4ecd_A 350 AVPAASVVAEAMVRLTLAKYALDKFGGDSVAETRRNLESYLASWPEH 396 (398)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHHHTTC----
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988764
No 2
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=100.00 E-value=2e-112 Score=819.34 Aligned_cols=281 Identities=32% Similarity=0.424 Sum_probs=264.5
Q ss_pred CCCCCCCccccccccccCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCccccccc-
Q 022731 2 SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLT- 79 (293)
Q Consensus 2 ~~~pRPGHAD~t~~~KYg~~D~rGG-gRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~- 79 (293)
++.||||||||||++|||++||||| |||||||||+||||||||||||++ +||+|.|||++||+|+++.. ......+
T Consensus 103 ~~~~RPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a~v~~iG~i~~~~~-~~~~~~~~ 180 (388)
T 1qxo_A 103 ITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAE-LDMEIANHVVVFGGKEIDVP-ENLTVAEI 180 (388)
T ss_dssp CCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHH-TTCEEEEEEEEETTEECCCC-SSCCHHHH
T ss_pred cCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHh-CCcEEEEEEEEEeCEEcCcc-cccchhhH
Confidence 4799999999999999999999999 999999999999999999999998 79999999999999996531 0001223
Q ss_pred HHhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCccc--CchhHHHHHHhccCCCccceeecc
Q 022731 80 LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF--DKLEAELAKAMMSLPATKGFEVGS 157 (293)
Q Consensus 80 ~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f--~kLda~La~a~mSIpAVKgvE~G~ 157 (293)
++++++|+|||||++++++|+++|+++|++|||+||+|||+++|||+|||+|+| ||||++||+||||||||||||||+
T Consensus 181 ~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvf~d~kLda~LA~AlmSI~AvKGvEiG~ 260 (388)
T 1qxo_A 181 KQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLDARLAQAVVSINAFKGVEFGL 260 (388)
T ss_dssp HHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETT
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCcCCcccccccchHHHHHHhcCcCceeEEEECc
Confidence 678899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeeccccccc
Q 022731 158 GFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDP 237 (293)
Q Consensus 158 Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDp 237 (293)
||++++++|||+||+|+++++++++++|||+|||+|||||||||+||++|||||||.+||+|||+++++.++.++|||||
T Consensus 261 GF~~a~~~GSe~nD~~~~~~~~g~~~~tN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~TVd~~~~e~~~~~~gRhDp 340 (388)
T 1qxo_A 261 GFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYKPLMSVDIETHEPYKATVERSDP 340 (388)
T ss_dssp GGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEEECTTTCCEEEECCSSCCS
T ss_pred chhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEEEEeCCCccccccccceecCCCEeeeecCCCCCc
Confidence 99999999999999998754446999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHccccccccCCCCcccCCCCCCC
Q 022731 238 CVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPEL 284 (293)
Q Consensus 238 Ci~pRa~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~~~~~~ 284 (293)
|++|||+||+|||+||||||++|++++++++.++++++.+|++.++.
T Consensus 341 CvvprA~pV~EAm~AlvlaD~~L~~~~~d~~~e~~~~~~~y~~~~~~ 387 (388)
T 1qxo_A 341 TALPAAGMVMEAVVATVLAQEILEKFSSDNLEELKEAVAKHRDYTKN 387 (388)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSCCSBHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999876543
No 3
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=100.00 E-value=1.5e-112 Score=823.66 Aligned_cols=285 Identities=35% Similarity=0.494 Sum_probs=266.4
Q ss_pred CCCCCCccccccccccCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccHH
Q 022731 3 VAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLD 81 (293)
Q Consensus 3 ~~pRPGHAD~t~~~KYg~~D~rGG-gRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~~ 81 (293)
+.||||||||||++|||++||||| |||||||||+||||||||||||++.+||+|.|||++||+|+++..+. ....+++
T Consensus 109 ~~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~~~GI~i~a~v~~iG~i~~~~~~~-~~~~~~~ 187 (407)
T 2o11_A 109 TRPRPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISIGASAPYEGPP-PRAEDLP 187 (407)
T ss_dssp CSCCTTSSHHHHHHHHTCSSSHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHCCEEEEEEEEETTCCCCCSCC-CCGGGHH
T ss_pred CCCCCCccchhhHhhcCCcccCCccccchHHHHHHHHHHHHHHHHHHhhcCCcEEEEEEEEEeCEEcccccc-cchhhHH
Confidence 799999999999999999999999 99999999999999999999998746999999999999998652101 0234578
Q ss_pred hhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcc--cCchhHHHHHHhccCCCccceeecccc
Q 022731 82 QVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV--FDKLEAELAKAMMSLPATKGFEVGSGF 159 (293)
Q Consensus 82 ~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~--f~kLda~La~a~mSIpAVKgvE~G~Gf 159 (293)
++++|+|||||++++++|+++|+++|++|||+||+|||+++|||+|||+|+ |||||++||+||||||||||||||+||
T Consensus 188 ~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pv~~f~kLda~LA~AlmSI~AvKGvEiG~GF 267 (407)
T 2o11_A 188 AIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLGSFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGF 267 (407)
T ss_dssp HHHHSTTCCSSHHHHHHHHHHHHHHHHHTCCCCEEEEEEEESCCTTCSCSSSGGGSHHHHHHHHHHTSTTEEEEEETTHH
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCCCCcccccchhHHHHHHhcCcCceeeEEeccch
Confidence 899999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeeccccccccc
Q 022731 160 AGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCV 239 (293)
Q Consensus 160 ~~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCi 239 (293)
++++++|||+||+|+++++ +++++|||+|||+|||||||||+||++|||||||.+||+|||+++++.++.++||||||+
T Consensus 268 ~~a~~~GSe~nD~~~~~~~-g~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~TVd~~~~e~~~~~~gRhDpCv 346 (407)
T 2o11_A 268 QTARRRGSRAHDEMYPGPD-GVVRSTNRAGGLEGGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCA 346 (407)
T ss_dssp HHTTSCHHHHSCCCBCCTT-SCBCSCCTTTTEETTEECSSCEEEEEEECCCSCCTTTCEEECTTTCCEEECCCSCCCSCC
T ss_pred hhhhccccccccceeecCC-CceecCcCccCcccccCCCCcEEEEEEeCCCccccccccceecCCCeeeeecCCCCCcee
Confidence 9999999999999987543 499999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHccccccccCCCCcccCCCCCCCCCCCC
Q 022731 240 VPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPELEPAPA 289 (293)
Q Consensus 240 ~pRa~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (293)
+|||+||+|||+||||||++|++++++++.++++++.+|++.++.+..|+
T Consensus 347 vprA~pV~EAm~AlvLaD~~L~~~~~d~~~e~~~~~~~y~~~~~~~~~~~ 396 (407)
T 2o11_A 347 VPAAGVVVETMVALVLARAALEKFGGDSLAETQRNIAAYQRSVADREAPA 396 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHHHHHHHHTC----
T ss_pred ecchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999988887775
No 4
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=100.00 E-value=2.2e-111 Score=814.32 Aligned_cols=280 Identities=35% Similarity=0.485 Sum_probs=228.9
Q ss_pred CCCCCccccccccccCCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCC---c---ccc
Q 022731 4 AYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDV---V---DHE 76 (293)
Q Consensus 4 ~pRPGHAD~t~~~KYg~~D~rGG-gRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~---~---~~~ 76 (293)
.||||||||||++|||++||||| |||||||||+||||||||||||++ +||+|.|||++||+|+++... + +..
T Consensus 111 ~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a~v~~iG~i~~~~~~~~~~~~~~~~ 189 (401)
T 1q1l_A 111 RPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSE-FGIKIGSFVVSIGQKEVEELKDKSYFANPEK 189 (401)
T ss_dssp ----------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHT-TTCEEEEEEEEETTEECGGGSSGGGGGCHHH
T ss_pred CCCCCCcchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHH-CCeEEEEEEEEEcCEEcccccccccccCCCc
Confidence 39999999999999999999999 999999999999999999999998 799999999999999964200 0 001
Q ss_pred ccc-HHhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCc-ccCc-hhHHHHHHhccCCCccce
Q 022731 77 MLT-LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSP-VFDK-LEAELAKAMMSLPATKGF 153 (293)
Q Consensus 77 ~~~-~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p-~f~k-Lda~La~a~mSIpAVKgv 153 (293)
..+ ++++++|+|||||++++++|+++|+++|++|||+||+|||+++|||+|||+| +||| ||++||+|||||||||||
T Consensus 190 ~~~~~~~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pv~fdkrLda~LA~AlmSI~AvKGv 269 (401)
T 1q1l_A 190 LLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGV 269 (401)
T ss_dssp HHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEE
T ss_pred hhhHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCcccccccchHHHHHHhcCcCceeEE
Confidence 223 6788999999999999999999999999999999999999999999999999 7999 999999999999999999
Q ss_pred eecccccccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeeccc
Q 022731 154 EVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARG 233 (293)
Q Consensus 154 E~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~g 233 (293)
|||+||++++++|||+||+|+++++++++++|||+|||+|||||||||+||++|||||||.+||+|||+++++.++.++|
T Consensus 270 EiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~TVd~~~~e~~~~~~g 349 (401)
T 1q1l_A 270 EIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRVAMKPIPTLKNPLRSVDIETKEEMKAGKE 349 (401)
T ss_dssp EETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCCC---------------------
T ss_pred EECcchhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEEEEeCCCccccccccceecCCCeeeeecCC
Confidence 99999999999999999999875444699999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHccccccccCCCCcccCCCCCCC
Q 022731 234 RHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMKLPEL 284 (293)
Q Consensus 234 RhDpCi~pRa~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~~~~~~ 284 (293)
|||||++|||+||+|||+||||||++|++++++++.++++++.+|++.++.
T Consensus 350 RhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~d~~~e~~~~~~~y~~~~~~ 400 (401)
T 1q1l_A 350 RTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFMEEVKKRFEDYVNHVKS 400 (401)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHHHHHHHHT
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999876543
No 5
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=100.00 E-value=1.6e-110 Score=804.24 Aligned_cols=268 Identities=53% Similarity=0.831 Sum_probs=194.1
Q ss_pred CCCCCCCCccccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcc------
Q 022731 1 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVD------ 74 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~------ 74 (293)
+++.||||||||||++|||++||||||||||||||+||||||||||||++.+||+|.|||++||+|+++.. +.
T Consensus 96 ~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~~~GI~i~a~v~~iG~i~~~~~-~~~~~~~~ 174 (382)
T 1r53_A 96 MDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRD-SFDPEFQH 174 (382)
T ss_dssp -------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETTEECCCC-TTCHHHHH
T ss_pred ccCCCCCCccchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEcCEecccc-cccccccc
Confidence 35789999999999999999999999999999999999999999999988669999999999999996531 10
Q ss_pred -cccccHHhhhcCc-CCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccc
Q 022731 75 -HEMLTLDQVESNI-VRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKG 152 (293)
Q Consensus 75 -~~~~~~~~~~~~~-~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKg 152 (293)
....+++++++|+ +||||++++++|+++|+++|++|||+||+|||+++|||+|||||+||||||+||+||||||||||
T Consensus 175 ~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvfdkLda~LA~A~mSI~AvKG 254 (382)
T 1r53_A 175 LLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEAMLAHAMLSIPASKG 254 (382)
T ss_dssp HHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHHHHHHHHHTSTTBCC
T ss_pred cccccCHHHHhcCCCccCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCcccccchHHHHHHhcCccceeE
Confidence 0244578899999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCcccccceecCC-CCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeec
Q 022731 153 FEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIA 231 (293)
Q Consensus 153 vE~G~Gf~~a~~~GSe~nD~~~~~~~-~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~ 231 (293)
||||+||++++++|||+||+|+..++ |+++++|||+|||+|||||||||+||++|||||||.+||+|||+++++.++.+
T Consensus 255 vEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~TVd~~~~~~~~~~ 334 (382)
T 1r53_A 255 FEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQKTATYDGEEGILAA 334 (382)
T ss_dssp CEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC---------------------
T ss_pred EEeccchhhhhccccccccceeccccCCceeecCcCccCccccccCCCeEEEEEEECCcccccccccccccccCcchhhc
Confidence 99999999999999999999974321 57999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHccccccc
Q 022731 232 RGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLF 269 (293)
Q Consensus 232 ~gRhDpCi~pRa~pVvEAm~AlvLaD~~L~~~~~~~~~ 269 (293)
+||||||++|||+||+|||+||||||++|++++.+..+
T Consensus 335 ~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~~~~~ 372 (382)
T 1r53_A 335 KGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFSR 372 (382)
T ss_dssp --CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCcccccchHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 99999999999999999999999999999999866443
No 6
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=100.00 E-value=3.6e-109 Score=791.09 Aligned_cols=257 Identities=38% Similarity=0.566 Sum_probs=196.3
Q ss_pred CCCCCCCCccccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 1 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
+++.||||||||||++|||+|||||||||||||||+||||||||||||++ +||+|.|||++||+|+++. +....++
T Consensus 95 ~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a~v~~iG~i~~~~---~~~~~~~ 170 (370)
T 1sq1_A 95 LKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLRE-FDICVQSGVFGVGTFVSNL---KEEEFDF 170 (370)
T ss_dssp -----------------------------CCCTHHHHHHHHHHHHHHHHT-TTCEEEEEEEEETTEECCS---CGGGSCH
T ss_pred hcCCCCCCCcchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECCEecCC---CcCccCH
Confidence 35789999999999999999999999999999999999999999999998 7999999999999999653 1234568
Q ss_pred HhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCCccceeeccccc
Q 022731 81 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 160 (293)
Q Consensus 81 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpAVKgvE~G~Gf~ 160 (293)
+++++|++||||++++++|+++|+++|++|||+||+|||+++|||+|||||+|||||++||+||||||||||||||+||+
T Consensus 171 ~~~~~~~~~cpd~~~~~~m~~~I~~~k~~gDS~GGvve~v~~gvP~GLG~pvfdkLda~LA~AlmSI~AvKGvEiG~GF~ 250 (370)
T 1sq1_A 171 EFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALMGINAVKAVEIGEGIN 250 (370)
T ss_dssp HHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHHHHHHHTSTTEEEEEETTGGG
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcCCCCCCCcccccchHHHHHHhcCccceeEEEeccchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeecccccccccc
Q 022731 161 GTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVV 240 (293)
Q Consensus 161 ~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gRhDpCi~ 240 (293)
+++++|||+||+| . +|++ +|||+|||+|||||||||+||++|||||||.+||+|||+++++.++.++||||||++
T Consensus 251 ~a~~~GSe~nD~~--~-~g~~--~tN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~TVd~~~~~~~~~~~gRhDpCvv 325 (370)
T 1sq1_A 251 ASKMRGSCNNDAL--K-DGKF--LSNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVG 325 (370)
T ss_dssp GGGSCHHHHCCCC--S-SSSC--SCCTTCSEETTEEBSSCEEEEEEECCCC---------------------CCSCSCTH
T ss_pred hhhcccccccccc--c-CCcc--ccccCCCccccccCCCcEEEEEEecCCccccccccceecCCCEeeeccCCCCCceee
Confidence 9999999999999 3 3544 999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHcccc
Q 022731 241 PRAVPMVEAMVALVLMDQLMAQHAQC 266 (293)
Q Consensus 241 pRa~pVvEAm~AlvLaD~~L~~~~~~ 266 (293)
|||+||+|||+||||||++|++++.+
T Consensus 326 prA~pV~EAm~AlvLaD~~L~~~~~~ 351 (370)
T 1sq1_A 326 VRGSVVASAMVRLVLADCLLLNASAN 351 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999998865
No 7
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=100.00 E-value=4.7e-108 Score=781.56 Aligned_cols=253 Identities=39% Similarity=0.589 Sum_probs=242.9
Q ss_pred CCCCCCCCccccccccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCcEEEEEeccccceecCCCCcccccccH
Q 022731 1 MSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTL 80 (293)
Q Consensus 1 ~~~~pRPGHAD~t~~~KYg~~D~rGGgRsSaReTa~rVaAGaiAk~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~ 80 (293)
+++.||||||||||+.|||++||||||||||||||+||||||||||||++ +||+|.|||++||+|+++ .+++
T Consensus 96 ~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~rVAaGAiAk~~L~~-~gI~i~~~v~~iG~i~~~-------~~~~ 167 (365)
T 1um0_A 96 IKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLRE-IGIVCESGIIEIGGIKAK-------NYDF 167 (365)
T ss_dssp CTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHH-TTEEEEEEEEEETTEECS-------SCCH
T ss_pred ccCCCCCCCcchhhHhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECCEecC-------cCCH
Confidence 46799999999999999999999999999999999999999999999998 699999999999999864 2447
Q ss_pred HhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccCcEEEEEEEe------CCCCcCCcccCchhHHHHHHhccCCCcccee
Q 022731 81 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRN------CPRGLGSPVFDKLEAELAKAMMSLPATKGFE 154 (293)
Q Consensus 81 ~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGGvve~~~~g------vP~GLG~p~f~kLda~La~a~mSIpAVKgvE 154 (293)
+++++|++||||++++++|+++|+++|++|||+||+|||+++| ||+|||||+|||||++||+||||||||||||
T Consensus 168 ~~~~~~~~~cpd~~~~~~m~~~I~~ak~~gDSiGGvve~v~~g~~~~~~vP~GLG~pvfdkLda~LA~A~msI~AvKGvE 247 (365)
T 1um0_A 168 NHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKIAEAMMGLNGVKAVE 247 (365)
T ss_dssp HHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHHHHHHHHTSTTEEEEE
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcccccCcCCCCCCCcccccchHHHHHHhcCccceeeEE
Confidence 8899999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ecccccccccCCCcccccceecCCCCeeeccCCCccccccccCCCceEEEEeeccCCcccccccccccCCceeeeecccc
Q 022731 155 VGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGR 234 (293)
Q Consensus 155 ~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~~~~~gR 234 (293)
||+||++++++|||+||+|+ + +| ++|||+|||+|||||||||+||++|||||||.+||+|||+++++.++.++||
T Consensus 248 iG~GF~~a~~~GSe~nD~~~-~-~g---~~tN~aGGi~GGISnG~pIv~r~a~KPt~SI~~~q~TVd~~~~~~~~~~~gR 322 (365)
T 1um0_A 248 IGKGVESSLLKGSEYNDLMD-Q-KG---FLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLKGR 322 (365)
T ss_dssp ETTGGGGGGSBHHHHCCCEE-T-TE---ESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEEEBTTSCEEEECCCSC
T ss_pred eccchhhhhcccccccchhc-c-CC---CcccCccCccccccCCCcEEEEEEECCCccccccccceecCCCEeeeccCCC
Confidence 99999999999999999997 3 33 4999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHcccc
Q 022731 235 HDPCVVPRAVPMVEAMVALVLMDQLMAQHAQC 266 (293)
Q Consensus 235 hDpCi~pRa~pVvEAm~AlvLaD~~L~~~~~~ 266 (293)
||||++|||+||+|||+||||||++|++++.+
T Consensus 323 hDpCvvprA~pV~EAm~AlvlaD~~L~~~~~~ 354 (365)
T 1um0_A 323 HDPCIAIRGSVVCESLLALVLADMVLLNLTSK 354 (365)
T ss_dssp CCSCTHHHHHHHHHHHHHHHHHHHHHHGGGSB
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999998864
No 8
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=88.12 E-value=0.19 Score=39.65 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=23.9
Q ss_pred hHHHHHHhccCCCccceeeccccccccc
Q 022731 137 EAELAKAMMSLPATKGFEVGSGFAGTFL 164 (293)
Q Consensus 137 da~La~a~mSIpAVKgvE~G~Gf~~a~~ 164 (293)
.+-||+.||.||+||+|.||.-|=....
T Consensus 38 ~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (94)
T 2k1h_A 38 QPEFINRLFEIEGVKSIFYVLDFISIDK 65 (94)
T ss_dssp SCHHHHHHHTSTTEEEEEEETTEEEEEE
T ss_pred CCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 4679999999999999999988765544
No 9
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=81.32 E-value=0.51 Score=37.01 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=24.4
Q ss_pred hHHHHHHhccCCCccceeeccccccccc
Q 022731 137 EAELAKAMMSLPATKGFEVGSGFAGTFL 164 (293)
Q Consensus 137 da~La~a~mSIpAVKgvE~G~Gf~~a~~ 164 (293)
.+-||+.||.||+||+|.||.-|=....
T Consensus 38 ~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (91)
T 1pqx_A 38 QPAFINDILKVEGVKSIFHVMDFISVDK 65 (91)
T ss_dssp CCHHHHHHHHSTTEEEEEEETTEEEEEE
T ss_pred CCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 4779999999999999999998866555
No 10
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=78.72 E-value=3.3 Score=40.30 Aligned_cols=74 Identities=20% Similarity=0.411 Sum_probs=46.1
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|||+||= + .+.|+..|..- ..|.-----...+. +.+..
T Consensus 10 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~eL~RR--------------------rpG~~r~~t~R~E~-D~v~I---- 62 (398)
T 4ecd_A 10 AGESHGEALVAMIEGLPAGVR--ISTDDIVSALARR--------------------RLGYGRGARMKFEQ-DKVRL---- 62 (398)
T ss_dssp ECCTTSSEEEEEEECCCBTCB--CCHHHHHHHHHHT--------------------TCCCBCC------C-CCEEE----
T ss_pred eecCCCCeeEEEEccCCCCCc--cCHHHHHHHHHhc--------------------CCCCCCCCCCCCCC-CceEE----
Confidence 589999999999999999985 4 35566665542 22321111111111 23332
Q ss_pred CccccccccCCCceEEEEeecc
Q 022731 188 SGGIQGGISNGEIINMRIAFKP 209 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~KP 209 (293)
..|+.-|.|+|.||-+.+.=+=
T Consensus 63 lSGv~~G~TtGtPI~l~I~N~d 84 (398)
T 4ecd_A 63 LTGVRHGLTLGSPVAIEIANTE 84 (398)
T ss_dssp EESEETTEECSSCEEEEEEC--
T ss_pred EEcccCCCcCCCCeEEEEEcCC
Confidence 2689999999999999885443
No 11
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=77.42 E-value=3.7 Score=39.79 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=45.3
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|||+||= + .+.|+..|..- ..|.-----...+. +.+..
T Consensus 13 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~~L~RR--------------------rpG~~r~~t~R~E~-D~v~I---- 65 (382)
T 1r53_A 13 YGESHCKSVGCIVDGVPPGMS--LTEADIQPQLTRR--------------------RPGQSKLSTPRDEK-DRVEI---- 65 (382)
T ss_dssp ECCTTSSEEEEEEECCCTTCB--CCGGGTHHHHHTT--------------------CC-------------CCCEE----
T ss_pred cccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHhh--------------------CCCCCCCCCCCCCC-CeeEE----
Confidence 489999999999999999985 4 56777776542 22211000011111 12222
Q ss_pred CccccccccCCCceEEEEeec
Q 022731 188 SGGIQGGISNGEIINMRIAFK 208 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~K 208 (293)
..|+.-|.|+|.||-+.+.=+
T Consensus 66 lSGv~~G~TtGtPI~~~I~N~ 86 (382)
T 1r53_A 66 QSGTEFGKTLGTPIAMMIKNE 86 (382)
T ss_dssp CSSEETTEECSSCEEEEEEC-
T ss_pred eecccCCccCCCCeEEEEecC
Confidence 268889999999999877643
No 12
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=76.76 E-value=3.2 Score=40.51 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=46.3
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|||+||= + .+.|+..|..-- .|.-----...+ .+.+...
T Consensus 7 ~GESHG~alg~VIdG~PaGl~--l~~edIq~eL~RRr--------------------pG~~r~~t~R~E-~D~v~Il--- 60 (407)
T 2o11_A 7 AGESHGRALVAVVEGMVAGVH--VTSADIADQLARRR--------------------LGYGRGARMTFE-RDAVTVL--- 60 (407)
T ss_dssp ECCTTSSEEEEEEESCCBTCB--CCHHHHHHHHHHHT--------------------CCCC----------CCEEEE---
T ss_pred cccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHhhC--------------------CCCCCCCCCCCC-CCeeEEe---
Confidence 489999999999999999995 4 466666666532 221000000111 1223322
Q ss_pred CccccccccCCCceEEEEeec
Q 022731 188 SGGIQGGISNGEIINMRIAFK 208 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~K 208 (293)
.|+.-|.|||.||-+.+.=+
T Consensus 61 -SGV~~G~TtGtPI~~~I~N~ 80 (407)
T 2o11_A 61 -SGIRHGSTLGGPIAIEIGNT 80 (407)
T ss_dssp -ESEETTEECSSCEEEEEECT
T ss_pred -ecccCCccCCCCeEEEEecc
Confidence 68889999999999988644
No 13
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=76.00 E-value=3.3 Score=40.35 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=47.3
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|||+||= + .+.|+..|..-=- |.| ....++ .-.|. +...
T Consensus 14 ~GESHG~alg~vIdG~PaGl~--l~~edIq~~L~RRrp----------G~~-r~~t~R--~E~D~--------v~Il--- 67 (401)
T 1q1l_A 14 AGESHGKGLTAILEGIPANLP--LSEEEINHELRRRQR----------GYG-RGGRMK--IEKDT--------AEIL--- 67 (401)
T ss_dssp ECCTTSSEEEEEEECCCBTCB--CCHHHHHHHHHHHHT----------TCC---------CCSCC--------EEEE---
T ss_pred cccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHhhCC----------CCC-CCCCCC--CCCCe--------eEEe---
Confidence 589999999999999999996 4 4666666665432 111 001110 01233 3322
Q ss_pred CccccccccCCCceEEEEeec
Q 022731 188 SGGIQGGISNGEIINMRIAFK 208 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~K 208 (293)
.|+.-|.|+|.||-+.+.=+
T Consensus 68 -SGv~~G~TtGtPI~~~I~N~ 87 (401)
T 1q1l_A 68 -SGVRFGKTLGSPIALFIRNR 87 (401)
T ss_dssp -ESEETTEECSSCEEEEEECS
T ss_pred -ecccCCccCCCCeEEEEecC
Confidence 68888999999999887655
No 14
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=77.17 E-value=0.59 Score=37.75 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=24.7
Q ss_pred hhHHHHHHhccCCCccceeeccccccccc
Q 022731 136 LEAELAKAMMSLPATKGFEVGSGFAGTFL 164 (293)
Q Consensus 136 Lda~La~a~mSIpAVKgvE~G~Gf~~a~~ 164 (293)
..+-||+.||.||+||+|.||.-|=....
T Consensus 47 ~~SPLA~~LF~i~gVk~Vf~g~dFITVtK 75 (107)
T 2ltm_A 47 FRSPLARQLFRIEGVKSVFFGPDSITVTK 75 (107)
Confidence 34779999999999999999998866644
No 15
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=75.08 E-value=4 Score=39.33 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=71.5
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|||+||= + .+.|+..|..-- .|.--.--...+. +.+..
T Consensus 13 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~~L~RRr--------------------pG~~r~~t~R~E~-D~v~I---- 65 (365)
T 1um0_A 13 FGESHGDVIGGVLDGMPSGIK--IDYALLENEMKRRQ--------------------GGRNVFITPRKED-DKVEI---- 65 (365)
T ss_dssp CCSCCSSEEEEEEECCCBTCB--CCHHHHHHHHHHHT--------------------TCCSSCCCHHHHS-CEEEE----
T ss_pred eccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHhhC--------------------CCCCCCCCCCCCC-CeeEE----
Confidence 489999999999999999995 4 456666665432 2211100111111 22332
Q ss_pred CccccccccCCCceEEEEeeccCCcccccccccccCCceee----------eecccccccccccchhHHHH--HHHHHHH
Q 022731 188 SGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETE----------LIARGRHDPCVVPRAVPMVE--AMVALVL 255 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e~~----------~~~~gRhDpCi~pRa~pVvE--Am~AlvL 255 (293)
..|+.-|.|||.||-+.+.=+ .|+|.|++..... ..-+|-.|.-=+=|++-=-- =++|=+|
T Consensus 66 lSGv~~G~TtGtPI~~~I~N~-------d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~rVAaGAi 138 (365)
T 1um0_A 66 TSGVFEDFSTGTPIGFLIHNQ-------RARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAF 138 (365)
T ss_dssp CSSEETTEECSSCEEEEEECC-------CSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHH
T ss_pred eecccCCccCCCCeEEEEEcC-------CCCCCchhhccCCCCCCCcchhhHhhcCCccccCcchhhHHHHHHHHHHHHH
Confidence 257888999999999987643 4455555432111 11134455555555544222 2456678
Q ss_pred HHHHHHHcc
Q 022731 256 MDQLMAQHA 264 (293)
Q Consensus 256 aD~~L~~~~ 264 (293)
|..+|++++
T Consensus 139 Ak~~L~~~g 147 (365)
T 1um0_A 139 AKMLLREIG 147 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 888998754
No 16
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=69.36 E-value=1.3 Score=36.45 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=24.8
Q ss_pred hHHHHHHhc-cCCCccceeecccccccccC
Q 022731 137 EAELAKAMM-SLPATKGFEVGSGFAGTFLT 165 (293)
Q Consensus 137 da~La~a~m-SIpAVKgvE~G~Gf~~a~~~ 165 (293)
.+-||..|| .|++||+|.||.-|=.....
T Consensus 60 ~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~ 89 (119)
T 2ltl_A 60 HSKLAQQIFLQCPGVESLMIGDDFLTINKD 89 (119)
Confidence 467999999 99999999999988666653
No 17
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=40.27 E-value=15 Score=35.66 Aligned_cols=73 Identities=25% Similarity=0.455 Sum_probs=47.4
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|||+||= + .+.|+..|..--- |.| +++. ...+ .+.+..
T Consensus 6 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~~L~RRrp----------G~~------r~~t----~R~E-~D~v~I---- 58 (388)
T 1qxo_A 6 AGESHGPRLTAIIEGIPAGLP--LTAEDINEDLRRRQG----------GYG------RGGR----MKIE-NDQVVF---- 58 (388)
T ss_dssp ECCTTSSEEEEEEECCCBTCB--CCHHHHHHHHHHHHC----------STT------CCTH----HHHC-CCCCEE----
T ss_pred cccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHhhCC----------CCC------CCCc----CCCC-CCeeEE----
Confidence 489999999999999999995 4 4666666665432 111 1111 1111 122222
Q ss_pred CccccccccCCCceEEEEeec
Q 022731 188 SGGIQGGISNGEIINMRIAFK 208 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~K 208 (293)
..|+.-|.|+|.||-+.+.=+
T Consensus 59 lSGv~~G~TtGtPI~~~I~N~ 79 (388)
T 1qxo_A 59 TSGVRHGKTTGAPITMDVINK 79 (388)
T ss_dssp EESEETTEECSSCEEEEEECG
T ss_pred eecccCCccCCCCeEEEEecC
Confidence 268888999999999988654
No 18
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=40.25 E-value=64 Score=27.94 Aligned_cols=63 Identities=21% Similarity=0.257 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCcc---------------CcEEEEEEEeCCCCcCCcccCchhHHHHHHhccCCC--ccceeeccccc
Q 022731 98 KMIAAIDAVRVRGDSV---------------GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPA--TKGFEVGSGFA 160 (293)
Q Consensus 98 ~m~~~I~~ak~~gDSl---------------GGvve~~~~gvP~GLG~p~f~kLda~La~a~mSIpA--VKgvE~G~Gf~ 160 (293)
+|.+++.++.+.|-.+ .|...+=|.|||.-.| .++.+|+.|+-.-|- ++ |-=|.||.||.
T Consensus 50 ~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~--~l~G~daLlS~vqmp-~GvpVatV~I~~~~n 126 (174)
T 3lp6_A 50 AMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLG--RLDGLDSLLSIVQMP-AGVPVATVSIGGAGN 126 (174)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHHCSSCEEEEEECCS--SGGGHHHHHHHHCCC-TTCCCEECCTTCHHH
T ss_pred HHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhccCCCEEEeeCCCC--CCCCHHHHHHHhhCC-CCCeeEEEEcCcchH
Confidence 4666777787776541 1111222445565544 378999999988774 33 34466767766
Q ss_pred ccc
Q 022731 161 GTF 163 (293)
Q Consensus 161 ~a~ 163 (293)
++-
T Consensus 127 Aa~ 129 (174)
T 3lp6_A 127 AGL 129 (174)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 19
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=34.79 E-value=17 Score=35.05 Aligned_cols=121 Identities=19% Similarity=0.240 Sum_probs=55.3
Q ss_pred cCCccCcEEEEEEEeCCCCcCCcc-cCchhHHHHHHhccCCCccceeecccccccccCCCcccccceecCCCCeeeccCC
Q 022731 109 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 187 (293)
Q Consensus 109 ~gDSlGGvve~~~~gvP~GLG~p~-f~kLda~La~a~mSIpAVKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~i~~~tN~ 187 (293)
-|+|-|-.+-|++.|||+||= + .+.|+..|..- +|.-----...+ .+.+...
T Consensus 13 ~GESHG~alg~vIdG~PaGl~--l~~~dIq~~L~RR---------------------rG~~r~~t~R~E-~D~v~Il--- 65 (370)
T 1sq1_A 13 FGESHGVAVGCIIDGMPAGVK--FDEEFLQNELDKR---------------------KGGSKFATPRKE-SDKAQVL--- 65 (370)
T ss_dssp ECCGGGSCEEEEEECCCSSCB--CCHHHHHHHHHHT---------------------TC------------CCEEEC---
T ss_pred eccCCCCeeEEEEecCCCCCc--cCHHHHHHHHHHh---------------------cCCCCCCCCCCC-CCeeEEe---
Confidence 489999999999999999995 4 35555555542 121100011111 1233332
Q ss_pred CccccccccCCCceEEEEeeccCCcccccccccccCCce----------eeeecccccccccccchhH--HHHHHHHHHH
Q 022731 188 SGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKE----------TELIARGRHDPCVVPRAVP--MVEAMVALVL 255 (293)
Q Consensus 188 ~GGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVd~~~~e----------~~~~~~gRhDpCi~pRa~p--VvEAm~AlvL 255 (293)
.|+.-|.|||.||-+.+.=+ .|+|.|++... +-..-+|-.|.-=+=|++- -+==++|=+|
T Consensus 66 -SGv~~G~TtGtPI~~~I~N~-------d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAi 137 (370)
T 1sq1_A 66 -SGVFEGYTTGHPIAIVVFNE-------NAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAV 137 (370)
T ss_dssp -SSEETTEECSSCEEEEEC-----------------------------------------------CCCTHHHHHHHHHH
T ss_pred -ecccCCEeCCCCeEEEEecC-------CCCCCchhhhcCCCCCCCcchhhhhhcCCccccCcchhhHHHHHHHHHHHHH
Confidence 58888999999999877533 34444443211 1111124334333333322 1112356678
Q ss_pred HHHHHHHcc
Q 022731 256 MDQLMAQHA 264 (293)
Q Consensus 256 aD~~L~~~~ 264 (293)
|..+|++++
T Consensus 138 Ak~~L~~~G 146 (370)
T 1sq1_A 138 AAMLLREFD 146 (370)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHCC
Confidence 888887754
No 20
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=28.48 E-value=1e+02 Score=25.69 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=41.1
Q ss_pred HHHHhhcCCcEEEEEeccccceecCCCCcccccccHHhhhcCcCCCCCHH-HHHHHHHHHHHHHHcCCcc-----CcEEE
Q 022731 45 KKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPE-YAEKMIAAIDAVRVRGDSV-----GGVVT 118 (293)
Q Consensus 45 k~~L~~~~gI~i~s~v~~IG~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~m~~~I~~ak~~gDSl-----GGvve 118 (293)
..+-++ |+|.|.=.+---|+=..+ +. ++--|-+ .++.+++.|.+|++=-.++ |--.+
T Consensus 63 erl~~e-fni~v~y~imgsgsgvm~---i~-------------f~gddlea~ekalkemirqarkfagtvtytl~gn~l~ 125 (170)
T 4hhu_A 63 ERLKAE-FNINVQYQIMGSGSGVMV---IV-------------FEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLV 125 (170)
T ss_dssp HHHHHH-HTCEEEEEEECTTCCEEE---EE-------------EECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEE
T ss_pred HHHHHh-cceEEEEEEEeCCceEEE---EE-------------EecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEE
Confidence 445556 699887766544432211 01 1222333 3455888999999976654 66789
Q ss_pred EEEEeCCCCc
Q 022731 119 CIVRNCPRGL 128 (293)
Q Consensus 119 ~~~~gvP~GL 128 (293)
++++|+|.-+
T Consensus 126 i~itgvpeqv 135 (170)
T 4hhu_A 126 IVITGVPEQV 135 (170)
T ss_dssp EEEESCCHHH
T ss_pred EEEeCCcHHH
Confidence 9999999643
No 21
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=20.59 E-value=32 Score=30.13 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=28.1
Q ss_pred EeCCCCcCCcccCchhHHHHHHhc--cCCCccceeeccccccc
Q 022731 122 RNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSGFAGT 162 (293)
Q Consensus 122 ~gvP~GLG~p~f~kLda~La~a~m--SIpAVKgvE~G~Gf~~a 162 (293)
.|||.-.| -++.+|+.|+-.-| ++| |--|.|+.||.++
T Consensus 95 IgVP~~~~--~l~G~dsLlSivqmP~Gvp-VatV~Id~~~nAa 134 (183)
T 1o4v_A 95 IGVPVKTS--TLNGLDSLFSIVQMPGGVP-VATVAINNAKNAG 134 (183)
T ss_dssp EEEEECCT--TTTTHHHHHHHHTCCTTCC-CEECCTTCHHHHH
T ss_pred EEeeCCCC--CCCcHHHHHHHhcCCCCCe-eEEEecCCchHHH
Confidence 44555444 48899999999999 888 7777777766654
Done!