RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 022731
(293 letters)
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 371
Score = 276 bits (707), Expect = 2e-92
Identities = 143/270 (52%), Positives = 186/270 (68%), Gaps = 8/270 (2%)
Query: 5 YRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 64
RPSHAD TY KYG+++ GGGR+SARETIGRVA GA+A+K L Q + EI+A+V+Q
Sbjct: 100 PRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIG 159
Query: 65 NVVLPEDVVDHEM------LTLDQVES-NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVV 117
+ + D D E +T ++V+S +RCPD A M+ I+ R DS+GGVV
Sbjct: 160 EIKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVV 219
Query: 118 TCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDE 177
TC+VRN P GLG P FDKLEA LA AM+S+PA+KGFE+GSGF G + GS+HND FY ++
Sbjct: 220 TCVVRNLPTGLGEPCFDKLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEK 279
Query: 178 F-GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHD 236
+RT+TN SGG+QGGISNGE I + FK +TI ++Q T T + +E L A+GRHD
Sbjct: 280 ETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHD 339
Query: 237 PCVVPRAVPMVEAMVALVLMDQLMAQHAQC 266
P V PRA+P+VEAM ALVL D L+ Q A+
Sbjct: 340 PAVTPRAIPIVEAMTALVLADALLIQKARD 369
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
[TaxId: 63363]}
Length = 397
Score = 258 bits (661), Expect = 3e-85
Identities = 96/278 (34%), Positives = 141/278 (50%), Gaps = 11/278 (3%)
Query: 1 MSVAYRPSHADATYDMKYGVRSVQG-GGRSSARETIGRVAPGAVAKKILKQFAGTEILAY 59
RP HAD + +KY R ++ R+SARET RVA GAV KK L +F G +I ++
Sbjct: 104 PFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSEF-GIKIGSF 162
Query: 60 VSQAHNVVLPE-------DVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDS 112
V + E + + ++ E + +R P PE E+ ID V+ +G+S
Sbjct: 163 VVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGES 222
Query: 113 VGGVVTCIVRNCPRGLGSPVF--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHN 170
+GGV N P GLGS + +++ +A+AMMS+ A KG E+G GF GS+ +
Sbjct: 223 LGGVFEVFALNVPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVH 282
Query: 171 DEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELI 230
DE E +N GG +GGI+NG I +R+A KP T+ +V E KE
Sbjct: 283 DEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRVAMKPIPTLKNPLRSVDIETKEEMKA 342
Query: 231 ARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHL 268
+ R D VP A + EAM+A+VL D L+ + +
Sbjct: 343 GKERTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFM 380
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 388
Score = 255 bits (653), Expect = 4e-84
Identities = 90/274 (32%), Positives = 136/274 (49%), Gaps = 4/274 (1%)
Query: 1 MSVAYRPSHADATYDMKYGVRSVQ-GGGRSSARETIGRVAPGAVAKKILKQFAGTEILAY 59
RP HAD +KY ++ RSSARET RVA GAVAK++L + EI +
Sbjct: 102 KITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAEL-DMEIANH 160
Query: 60 VSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTC 119
V + + + V + E +++ ID ++ GD++GGVV
Sbjct: 161 VVVFGGKEIDVPENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVET 220
Query: 120 IVRNCPRGLGSPVF--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDE 177
+V P GLGS V KL+A LA+A++S+ A KG E G GF + GS+ DE +
Sbjct: 221 VVGGVPVGLGSYVQWDRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSK 280
Query: 178 FGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDP 237
RTN GG +GG++NG+ I +R KP T+ + +V E E R DP
Sbjct: 281 EDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYKPLMSVDIETHEPYKATVERSDP 340
Query: 238 CVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPI 271
+P A ++EA+VA VL +++ + + +L +
Sbjct: 341 TALPAAGMVMEAVVATVLAQEILEKFSSDNLEEL 374
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter
jejuni [TaxId: 197]}
Length = 360
Score = 250 bits (640), Expect = 2e-82
Identities = 97/261 (37%), Positives = 137/261 (52%), Gaps = 9/261 (3%)
Query: 5 YRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 64
+RP+HAD TY KYG+R +GGGRSSARE++ RVA GAVA +L++F
Sbjct: 99 FRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFG--- 155
Query: 65 NVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNC 124
V + E + + + + C DP+ I R DSVG V V
Sbjct: 156 -VGTFVSNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGM 214
Query: 125 PRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTR 184
GLG ++DKL+++LA A+M + A K E+G G + + GS +ND +F
Sbjct: 215 LIGLGEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKF-----L 269
Query: 185 TNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAV 244
+N SGGI GGISNGE + ++ FKPT +I KQ ++ + + +GRHDPCV R
Sbjct: 270 SNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGS 329
Query: 245 PMVEAMVALVLMDQLMAQHAQ 265
+ AMV LVL D L+ +
Sbjct: 330 VVASAMVRLVLADCLLLNASA 350
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter
pylori [TaxId: 210]}
Length = 365
Score = 244 bits (624), Expect = 5e-80
Identities = 98/267 (36%), Positives = 138/267 (51%), Gaps = 19/267 (7%)
Query: 5 YRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 64
+RPSHAD TY KYG+R +GGGRSSARE+ RVA GA AK +L++ +
Sbjct: 100 FRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGG 159
Query: 65 NVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNC 124
+ + + + D E E AI DS+GGV R+
Sbjct: 160 I--------KAKNYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSI 211
Query: 125 ------PRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF 178
P GLG ++ KL+A++A+AMM L K E+G G + L GSE+ND F
Sbjct: 212 KTNQKLPIGLGQGLYAKLDAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMDQKGF 271
Query: 179 GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPC 238
+NRSGG+ GG+SNGE I +R+ FKPT +I + Q T+ E E + +GRHDPC
Sbjct: 272 -----LSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLKGRHDPC 326
Query: 239 VVPRAVPMVEAMVALVLMDQLMAQHAQ 265
+ R + E+++ALVL D ++
Sbjct: 327 IAIRGSVVCESLLALVLADMVLLNLTS 353
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
flexneri [TaxId: 623]}
Length = 264
Score = 28.7 bits (63), Expect = 0.74
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 139 ELAKAMMSLPATKGFEVG-SGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQ 192
L KA+ A E + E D G++ R N S G +
Sbjct: 4 SLLKALSEADAIASSEQEVRQILLEEA--ARLQKEVRFDGLGSVLIRLNESTGPK 56
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 26.9 bits (58), Expect = 2.7
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 60 VSQAHNVVLPEDVVDHEMLTLDQVESNI 87
+ + +V P D+V+ E++ D V+ N+
Sbjct: 285 LERHIDVFAPNDIVNEELINNDHVDDNL 312
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 26.7 bits (57), Expect = 4.1
Identities = 11/65 (16%), Positives = 15/65 (23%), Gaps = 3/65 (4%)
Query: 101 AAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 160
A A+ GD C P+ D + +L K L
Sbjct: 17 EARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKF---LGCDVARVTNGARE 73
Query: 161 GTFLT 165
F
Sbjct: 74 AKFAV 78
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 522
Score = 26.2 bits (57), Expect = 5.1
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 163 FLTGSEHNDEFYTDE--FGNIRTRTNRSGGIQG 193
T + D FYTD I+ R +Q
Sbjct: 272 LETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQA 304
>d1vp5a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Thermotoga maritima [TaxId: 2336]}
Length = 284
Score = 26.1 bits (56), Expect = 5.7
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 38 VAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAE 97
P V ++ +K+ + L ++ ++ ++ TLD+ +S DPE +
Sbjct: 229 AIPKTVRRERMKENI---------SIFDFELTQEDME-KIATLDEGQSAFFSHRDPEVVK 278
Query: 98 KM 99
+
Sbjct: 279 WI 280
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 25.5 bits (55), Expect = 8.6
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 16/78 (20%)
Query: 69 PEDVVDHEMLTLDQVES-----NIVRCPDPEYAEKMIAAIDAVRVRGDSVG---GVVTCI 120
P DVV D +E D E A K +D ++ + G G+ I
Sbjct: 22 PSDVVKD---IYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGI 78
Query: 121 -----VRNCPRGLGSPVF 133
S +
Sbjct: 79 KDNIITNGLETTCASKML 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,068,256
Number of extensions: 48691
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 17
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)