Query 022733
Match_columns 293
No_of_seqs 299 out of 2163
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 10:14:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 99.9 3.4E-26 1.2E-30 213.4 -3.4 72 35-106 22-94 (329)
2 2dn9_A DNAJ homolog subfamily 99.8 9.8E-21 3.4E-25 140.9 6.0 73 36-108 2-76 (79)
3 2ctp_A DNAJ homolog subfamily 99.8 6.8E-21 2.3E-25 141.5 5.0 73 36-108 2-75 (78)
4 2ej7_A HCG3 gene; HCG3 protein 99.8 1.2E-20 4.2E-25 141.4 6.1 72 36-107 4-78 (82)
5 2ctr_A DNAJ homolog subfamily 99.8 1.3E-20 4.4E-25 143.3 5.9 73 36-108 2-75 (88)
6 2yua_A Williams-beuren syndrom 99.8 1.2E-20 4E-25 146.6 5.4 74 34-107 10-85 (99)
7 1hdj_A Human HSP40, HDJ-1; mol 99.8 2.5E-20 8.4E-25 138.1 5.8 68 41-108 3-71 (77)
8 1wjz_A 1700030A21RIK protein; 99.8 1.4E-20 4.7E-25 144.7 4.4 73 35-107 10-90 (94)
9 2dmx_A DNAJ homolog subfamily 99.8 2.9E-20 9.9E-25 142.4 5.7 73 36-108 4-79 (92)
10 2cug_A Mkiaa0962 protein; DNAJ 99.8 3.8E-20 1.3E-24 140.7 5.5 71 38-108 14-85 (88)
11 2och_A Hypothetical protein DN 99.8 3.7E-20 1.3E-24 135.8 5.1 68 38-106 5-72 (73)
12 2o37_A Protein SIS1; HSP40, J- 99.8 4.7E-20 1.6E-24 141.3 5.1 69 38-107 5-73 (92)
13 2lgw_A DNAJ homolog subfamily 99.8 4.5E-20 1.6E-24 143.4 4.6 69 40-108 1-72 (99)
14 2ctq_A DNAJ homolog subfamily 99.8 1.8E-19 6.1E-24 143.0 5.2 71 37-107 16-88 (112)
15 2ctw_A DNAJ homolog subfamily 99.8 4.2E-19 1.4E-23 140.2 6.0 71 37-107 13-85 (109)
16 1bq0_A DNAJ, HSP40; chaperone, 99.8 2.7E-19 9.2E-24 139.9 3.7 69 40-108 2-72 (103)
17 2l6l_A DNAJ homolog subfamily 99.7 1.8E-18 6.1E-23 144.7 4.8 72 36-107 5-84 (155)
18 2ys8_A RAB-related GTP-binding 99.7 3.9E-18 1.3E-22 130.2 5.8 62 39-100 25-87 (90)
19 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 1.6E-18 5.4E-23 136.8 3.1 71 38-108 12-88 (109)
20 1gh6_A Large T antigen; tumor 99.7 2.2E-18 7.4E-23 137.1 0.7 65 40-106 7-73 (114)
21 1iur_A KIAA0730 protein; DNAJ 99.7 2E-17 6.8E-22 125.7 4.4 66 35-100 10-78 (88)
22 3apq_A DNAJ homolog subfamily 99.7 2.4E-17 8.2E-22 143.1 5.0 68 41-108 2-71 (210)
23 2guz_A Mitochondrial import in 99.7 3.2E-17 1.1E-21 119.6 4.8 64 34-99 7-71 (71)
24 2pf4_E Small T antigen; PP2A, 99.7 4.3E-18 1.5E-22 144.5 -0.7 66 39-106 9-76 (174)
25 1faf_A Large T antigen; J doma 99.7 2.3E-17 7.9E-22 122.9 3.0 61 39-101 9-71 (79)
26 3hho_A CO-chaperone protein HS 99.7 2.8E-17 9.4E-22 140.1 3.5 68 39-106 2-78 (174)
27 3bvo_A CO-chaperone protein HS 99.6 9.3E-17 3.2E-21 140.4 5.2 81 25-105 27-116 (207)
28 1fpo_A HSC20, chaperone protei 99.6 5.7E-17 2E-21 137.8 3.0 66 41-106 1-75 (171)
29 1n4c_A Auxilin; four helix bun 99.6 2.1E-16 7E-21 135.0 4.3 61 41-101 117-182 (182)
30 3uo3_A J-type CO-chaperone JAC 99.6 1.4E-16 4.8E-21 136.5 2.4 68 37-105 7-81 (181)
31 2qwo_B Putative tyrosine-prote 99.6 3.7E-16 1.3E-20 119.3 3.4 54 41-94 33-91 (92)
32 3ag7_A Putative uncharacterize 99.6 4.2E-16 1.4E-20 122.3 2.4 58 39-97 39-105 (106)
33 3apo_A DNAJ homolog subfamily 99.5 4E-15 1.4E-19 152.4 0.3 73 36-108 16-90 (780)
34 1nlt_A Protein YDJ1, mitochond 99.2 6.4E-13 2.2E-17 119.1 0.2 106 141-246 38-166 (248)
35 2guz_B Mitochondrial import in 99.0 2.2E-10 7.4E-15 81.7 3.7 53 40-94 3-58 (65)
36 2y4t_A DNAJ homolog subfamily 98.9 7.2E-10 2.5E-14 103.2 5.1 65 40-104 381-450 (450)
37 3agx_A DNAJ homolog subfamily 97.8 7.4E-07 2.5E-11 75.9 -3.6 65 178-246 27-97 (181)
38 2ctt_A DNAJ homolog subfamily 97.0 0.00045 1.5E-08 53.1 3.7 61 140-204 27-103 (104)
39 2q2g_A HSP40 protein, heat sho 96.7 0.00011 3.9E-09 62.2 -2.5 55 192-246 36-97 (180)
40 1c3g_A Heat shock protein 40; 96.6 0.00011 3.7E-09 61.7 -3.2 51 196-246 34-91 (170)
41 1dax_A Ferredoxin I; electron 94.5 0.0064 2.2E-07 41.5 -0.1 59 134-192 4-62 (64)
42 1iqz_A Ferredoxin; iron-sulfer 93.7 0.0067 2.3E-07 43.7 -1.3 58 134-192 4-69 (81)
43 1dwl_A Ferredoxin I; electron 93.7 0.062 2.1E-06 35.4 3.7 57 134-191 2-58 (59)
44 1nlt_A Protein YDJ1, mitochond 91.1 0.28 9.6E-06 43.2 5.5 34 198-231 189-231 (248)
45 1sj1_A Ferredoxin; thermostabi 90.8 0.039 1.3E-06 37.3 -0.3 58 134-192 4-64 (66)
46 1exk_A DNAJ protein; extended 90.0 0.16 5.5E-06 36.3 2.4 31 152-186 28-58 (79)
47 1f2g_A Ferredoxin II; electron 89.5 0.072 2.5E-06 35.2 0.2 55 134-190 2-56 (58)
48 1rof_A Ferredoxin; electron tr 88.1 0.1 3.4E-06 34.5 0.1 26 134-159 3-28 (60)
49 2pzi_A Probable serine/threoni 86.7 0.38 1.3E-05 47.9 3.5 48 38-91 626-675 (681)
50 3i38_A Putative chaperone DNAJ 85.2 0.73 2.5E-05 35.3 3.7 32 199-230 39-75 (109)
51 1xao_A YDJ1, mitochondrial pro 79.4 3.1 0.0001 32.3 5.3 33 198-230 34-75 (121)
52 1jb0_C Photosystem I iron-sulf 68.2 1.3 4.4E-05 30.8 0.5 26 134-159 3-29 (80)
53 1xer_A Ferredoxin; electron tr 66.5 1.7 6E-05 31.8 0.9 27 132-158 36-63 (103)
54 1c3g_A Heat shock protein 40; 54.1 12 0.00039 30.6 3.9 34 198-231 114-155 (170)
55 1vda_A FMBP-1, fibroin-modulat 53.7 6.1 0.00021 21.7 1.4 10 256-265 1-10 (26)
56 3i9v_3 NADH-quinone oxidoreduc 49.7 8.4 0.00029 39.2 2.9 30 175-204 250-279 (783)
57 2q2g_A HSP40 protein, heat sho 49.0 15 0.00052 30.2 3.9 33 199-231 121-161 (180)
58 1gte_A Dihydropyrimidine dehyd 48.0 3.3 0.00011 43.4 -0.4 58 133-194 945-1007(1025)
59 3agx_A DNAJ homolog subfamily 46.8 28 0.00096 28.6 5.2 34 198-231 120-161 (181)
60 3lz8_A Putative chaperone DNAJ 42.5 18 0.00062 32.8 3.7 31 200-230 260-295 (329)
61 3i9v_9 NADH-quinone oxidoreduc 40.3 9.9 0.00034 30.6 1.4 17 137-153 49-65 (182)
62 3gyx_B Adenylylsulfate reducta 37.0 8.1 0.00028 31.4 0.3 20 134-153 2-26 (166)
63 1ti6_B Pyrogallol hydroxytrans 34.4 30 0.001 30.4 3.7 20 134-153 92-111 (274)
64 3eun_A Ferredoxin; electron tr 33.8 16 0.00054 25.4 1.4 19 135-153 2-20 (82)
65 2d9d_A BAG family molecular ch 33.6 32 0.0011 24.9 2.9 27 255-281 56-83 (89)
66 2zvs_A Uncharacterized ferredo 32.8 17 0.00059 25.4 1.5 19 135-153 2-20 (85)
67 3j16_B RLI1P; ribosome recycli 32.4 8.8 0.0003 38.0 -0.2 20 133-152 47-66 (608)
68 2fgo_A Ferredoxin; allochromat 31.2 20 0.0007 24.7 1.7 19 135-153 2-20 (82)
69 1rgv_A Ferredoxin; electron tr 31.0 22 0.00076 24.3 1.8 19 135-153 2-20 (80)
70 3c8y_A Iron hydrogenase 1; dit 30.0 12 0.00042 36.5 0.4 22 132-153 138-159 (574)
71 3lcz_A YCZA, inhibitor of trap 29.2 20 0.0007 23.5 1.2 11 153-163 24-34 (53)
72 3i9v_3 NADH-quinone oxidoreduc 27.5 9.1 0.00031 38.9 -1.1 21 133-153 173-193 (783)
73 1jnr_B Adenylylsulfate reducta 26.9 13 0.00043 29.6 -0.1 27 134-160 3-35 (150)
74 1hfe_L Protein (Fe-only hydrog 26.5 12 0.00041 35.1 -0.4 22 133-154 27-48 (421)
75 2vpz_B NRFC protein; oxidoredu 26.5 15 0.00052 30.5 0.3 23 133-155 5-27 (195)
76 2bx9_A Anti-trap, AT, tryptoph 23.0 31 0.0011 22.6 1.2 11 153-163 24-34 (53)
77 7fd1_A FD1, protein (7-Fe ferr 22.2 33 0.0011 25.0 1.4 17 136-152 34-50 (106)
78 1qqr_A Streptokinase domain B; 21.2 48 0.0016 26.2 2.1 32 42-73 33-64 (138)
79 2ivf_B Ethylbenzene dehydrogen 21.0 52 0.0018 30.1 2.7 20 134-153 177-196 (352)
80 1du9_A BMP02 neurotoxin; helix 21.0 11 0.00036 21.4 -1.2 13 180-192 2-14 (28)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.90 E-value=3.4e-26 Score=213.39 Aligned_cols=72 Identities=36% Similarity=0.593 Sum_probs=0.0
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccc
Q 022733 35 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIG 106 (293)
Q Consensus 35 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~ 106 (293)
++.+...|||+||||+++||.+|||+|||+|+++||||+++++ ++++|++|++||++|+||.+|..||.++.
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 3446778999999999999999999999999999999998754 56799999999999999999999999853
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-21 Score=140.94 Aligned_cols=73 Identities=42% Similarity=0.605 Sum_probs=65.9
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
+++...|||+||||+++++.++||++|++|++++|||+++. .+.+.|+.|++||++|+||.+|..||.++...
T Consensus 2 s~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CSSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 45667899999999999999999999999999999999874 35789999999999999999999999986543
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-21 Score=141.52 Aligned_cols=73 Identities=36% Similarity=0.552 Sum_probs=66.2
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
++....|||+||||+++++.++||++|++|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus 2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 446678999999999999999999999999999999999764 5679999999999999999999999987544
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=141.38 Aligned_cols=72 Identities=36% Similarity=0.510 Sum_probs=64.9
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhccccccccccccccc
Q 022733 36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 107 (293)
Q Consensus 36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~ 107 (293)
++....|||+||||+++++.++||+||++|++++|||+++.. +.+.|+.|++||++|+||.+|..||..+..
T Consensus 4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 4 GSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp CCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 345678999999999999999999999999999999999763 457999999999999999999999998643
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-20 Score=143.30 Aligned_cols=73 Identities=33% Similarity=0.541 Sum_probs=66.1
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
++....|||+||||+++++.++||++||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus 2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 2 SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp CSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 346678999999999999999999999999999999999754 5679999999999999999999999987543
No 6
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=146.64 Aligned_cols=74 Identities=32% Similarity=0.506 Sum_probs=66.6
Q ss_pred CCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhccccccccccccccc
Q 022733 34 GERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 107 (293)
Q Consensus 34 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~ 107 (293)
..+.+...|||+||||+++|+.++||+|||+|+++||||+++. .+.+.|+.|++||++|+||.+|..||..+..
T Consensus 10 ~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 85 (99)
T 2yua_A 10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85 (99)
T ss_dssp CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred CCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence 3556778999999999999999999999999999999999964 2567999999999999999999999997643
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.80 E-value=2.5e-20 Score=138.15 Aligned_cols=68 Identities=35% Similarity=0.527 Sum_probs=62.9
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
.|||+||||+++++.++||+||++|++++|||+++.+ +.+.|+.|++||++|+||.+|..||.++...
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 6899999999999999999999999999999999754 6789999999999999999999999987544
No 8
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.80 E-value=1.4e-20 Score=144.68 Aligned_cols=73 Identities=29% Similarity=0.508 Sum_probs=65.3
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--------chHHHHHHHHHHHHhhcccccccccccccc
Q 022733 35 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--------KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 106 (293)
Q Consensus 35 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~ 106 (293)
...+...|||+||||+++++.++||+||++|+++||||+++. .+.+.|+.|++||++|+||.+|..||..+.
T Consensus 10 ~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp CSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 344667899999999999999999999999999999999863 245799999999999999999999999875
Q ss_pred c
Q 022733 107 Q 107 (293)
Q Consensus 107 ~ 107 (293)
.
T Consensus 90 ~ 90 (94)
T 1wjz_A 90 G 90 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=142.44 Aligned_cols=73 Identities=38% Similarity=0.581 Sum_probs=65.7
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
++....|||+||||+++++.++||++|++|+++||||+++.. +.+.|+.|++||++|+||.+|..||..+...
T Consensus 4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp CCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 345578999999999999999999999999999999999763 4679999999999999999999999987554
No 10
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=3.8e-20 Score=140.73 Aligned_cols=71 Identities=30% Similarity=0.518 Sum_probs=64.6
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
....|||+||||+++++.++||++||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..||.++...
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 3467999999999999999999999999999999999764 6689999999999999999999999987543
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.79 E-value=3.7e-20 Score=135.85 Aligned_cols=68 Identities=37% Similarity=0.603 Sum_probs=61.7
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcccccccccccccc
Q 022733 38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 106 (293)
Q Consensus 38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~ 106 (293)
....|||+||||+++++.++||++|++|++++|||+++.. .+.|+.|++||++|+||.+|..||.+|.
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-AEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3457999999999999999999999999999999998653 6799999999999999999999999763
No 12
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.7e-20 Score=141.34 Aligned_cols=69 Identities=39% Similarity=0.536 Sum_probs=63.1
Q ss_pred CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccccccccc
Q 022733 38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 107 (293)
Q Consensus 38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~ 107 (293)
....|||+||||+++++.++||++|++|++++|||+++.. .+.|+.|++||++|+||.+|..||.++..
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-TEKFKEISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence 3567999999999999999999999999999999998644 57999999999999999999999998753
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-20 Score=143.37 Aligned_cols=69 Identities=32% Similarity=0.472 Sum_probs=62.8
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
+.|||+||||+++++.++||+||++|++++|||+++.. +.+.|+.|++||++|+||.+|..||..+...
T Consensus 1 M~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 36999999999999999999999999999999999764 5679999999999999999999999987544
No 14
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=143.04 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=64.8
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhccccccccccccccc
Q 022733 37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 107 (293)
Q Consensus 37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~ 107 (293)
.....|||+||||+++|+.++||+|||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+..
T Consensus 16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence 3557899999999999999999999999999999999974 3678999999999999999999999998754
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.2e-19 Score=140.23 Aligned_cols=71 Identities=30% Similarity=0.473 Sum_probs=64.5
Q ss_pred CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhccccccccccccccc
Q 022733 37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 107 (293)
Q Consensus 37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~ 107 (293)
+....|||+||||+++|+.++||++|++|++++|||+++.. +.+.|+.|++||++|+||.+|..||.++..
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence 35568999999999999999999999999999999999753 567999999999999999999999998743
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.75 E-value=2.7e-19 Score=139.90 Aligned_cols=69 Identities=39% Similarity=0.623 Sum_probs=63.4
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
..|||+||||+++++.++||++||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+...
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence 4699999999999999999999999999999999974 35689999999999999999999999988654
No 17
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-18 Score=144.75 Aligned_cols=72 Identities=28% Similarity=0.523 Sum_probs=64.8
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------hHHHHHHHHHHHHhhccccccccccccccc
Q 022733 36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--------GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 107 (293)
Q Consensus 36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--------~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~ 107 (293)
+.+...|||+||||+++++.++||+|||+|++++|||+++.. +.+.|+.|++||++|+||.+|..||..+..
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~ 84 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE 84 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence 346678999999999999999999999999999999998754 247999999999999999999999987743
No 18
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-18 Score=130.16 Aligned_cols=62 Identities=26% Similarity=0.370 Sum_probs=57.2
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccc
Q 022733 39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKD 100 (293)
Q Consensus 39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~ 100 (293)
...|||+||||+++++.++||+|||+|+++||||+++.. +.+.|+.|++||++|+||.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 357999999999999999999999999999999999764 67799999999999999999875
No 19
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.72 E-value=1.6e-18 Score=136.83 Aligned_cols=71 Identities=28% Similarity=0.481 Sum_probs=63.9
Q ss_pred CCccCcccccCCCCCC-CHHHHHHHHHHHHHhhCCCCCCC-----chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 38 SKKKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQ-----KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 38 ~~~~d~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPD~~~~-----~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
....|||+||||+++| +.++||+|||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||..+...
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~ 88 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence 3467999999999999 99999999999999999999875 24579999999999999999999999987543
No 20
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.69 E-value=2.2e-18 Score=137.10 Aligned_cols=65 Identities=29% Similarity=0.394 Sum_probs=60.3
Q ss_pred ccCcccccCCCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcccccccccccccc
Q 022733 40 KKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 106 (293)
Q Consensus 40 ~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~ 106 (293)
..+||+||||+++|+. ++||+|||+|++++|||++++ .++|++|++||++|+||.+|..||.++.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4689999999999999 999999999999999999876 4799999999999999999999998653
No 21
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.67 E-value=2e-17 Score=125.66 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=59.2
Q ss_pred CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhcccccccc
Q 022733 35 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKD 100 (293)
Q Consensus 35 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~ 100 (293)
.......++|+||||+++|+.+|||+|||+|+++||||+++.. +.+.|+.|++||++|+|...|..
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4556778999999999999999999999999999999999864 56899999999999999887743
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.67 E-value=2.4e-17 Score=143.13 Aligned_cols=68 Identities=44% Similarity=0.673 Sum_probs=62.5
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
.|||+||||+++|+.++||+|||+|++++|||+++. .+.+.|+.|++||++|+||.+|..||.++...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 71 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 71 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence 589999999999999999999999999999999864 36679999999999999999999999987543
No 23
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.2e-17 Score=119.60 Aligned_cols=64 Identities=23% Similarity=0.296 Sum_probs=56.6
Q ss_pred CCCCCCccCcccccCCCC-CCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccc
Q 022733 34 GERASKKKNYYELLGVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK 99 (293)
Q Consensus 34 ~~~~~~~~d~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~ 99 (293)
....++..++|+||||++ +++.++||++||+|++++|||++++ .+.|++|++||++|+|+..|+
T Consensus 7 ~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~--~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 7 FDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS--PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp CCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC--HHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHhhhhhcC
Confidence 345577789999999999 7999999999999999999999753 479999999999999987763
No 24
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.66 E-value=4.3e-18 Score=144.48 Aligned_cols=66 Identities=27% Similarity=0.342 Sum_probs=58.5
Q ss_pred CccCcccccCCCCCCC--HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcccccccccccccc
Q 022733 39 KKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 106 (293)
Q Consensus 39 ~~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~ 106 (293)
...|||+||||+++|+ .++||+|||++++++|||+++++ +.|++|++||++|+||.+|..||.++.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~--e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE--EKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC--TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH--HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3579999999999998 69999999999999999998764 789999999999999999999999874
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.66 E-value=2.3e-17 Score=122.86 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=55.8
Q ss_pred CccCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccc
Q 022733 39 KKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 101 (293)
Q Consensus 39 ~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~Y 101 (293)
...++|+||||+++ ++.++||+|||+|++++|||++++ .+.|++|++||++|+|+.+|..+
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~--~~~f~~i~~AYe~L~~~~~r~~~ 71 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTEVYNLRM 71 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHhhHHHHHHH
Confidence 34689999999999 999999999999999999999864 58999999999999999988873
No 26
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.66 E-value=2.8e-17 Score=140.13 Aligned_cols=68 Identities=29% Similarity=0.555 Sum_probs=60.5
Q ss_pred CccCcccccCCCCCCC--HHHHHHHHHHHHHhhCCCCCCCc-------hHHHHHHHHHHHHhhcccccccccccccc
Q 022733 39 KKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 106 (293)
Q Consensus 39 ~~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~ 106 (293)
...|||+||||+++++ ..+||++||+|+++||||+++.. +.+.|..|++||++|+||.+|..||..+.
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 3579999999999998 99999999999999999998754 34689999999999999999999998763
No 27
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.64 E-value=9.3e-17 Score=140.38 Aligned_cols=81 Identities=26% Similarity=0.473 Sum_probs=65.2
Q ss_pred cceeccCCCCCCCCCccCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-------hHHHHHHHHHHHHhhccc
Q 022733 25 VIRCCNGRAGERASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRG 95 (293)
Q Consensus 25 ~~~~~~~~~~~~~~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~~~i~~Ay~vL~d~ 95 (293)
.+.|..-..-+......|||+||||+++ ++..+||++||+|+++||||+++.. +.+.|+.||+||++|+||
T Consensus 27 ~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp 106 (207)
T 3bvo_A 27 RFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAP 106 (207)
T ss_dssp CCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred ccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 3444332222334456799999999987 7999999999999999999998753 235789999999999999
Q ss_pred cccccccccc
Q 022733 96 DLRKDYDASI 105 (293)
Q Consensus 96 ~~R~~YD~~~ 105 (293)
.+|..||..+
T Consensus 107 ~~R~~Yd~~l 116 (207)
T 3bvo_A 107 LSRGLYLLKL 116 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999764
No 28
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.63 E-value=5.7e-17 Score=137.77 Aligned_cols=66 Identities=24% Similarity=0.502 Sum_probs=60.0
Q ss_pred cCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCch-------HHHHHHHHHHHHhhcccccccccccccc
Q 022733 41 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG 106 (293)
Q Consensus 41 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~-------~~~~~~i~~Ay~vL~d~~~R~~YD~~~~ 106 (293)
.|||+||||++++ +..+||++||+|+++||||+++... .+.|..||+||++|+||.+|..||..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 3899999999999 9999999999999999999987542 3589999999999999999999999753
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.61 E-value=2.1e-16 Score=134.97 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=57.1
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----hHHHHHHHHHHHHhhccccccccc
Q 022733 41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDY 101 (293)
Q Consensus 41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~~~~i~~Ay~vL~d~~~R~~Y 101 (293)
.|||+||||+++|+.++||+|||++++++|||+++.. +.+.|+.|++||++|+||.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 6999999999999999999999999999999998654 467999999999999999999987
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.60 E-value=1.4e-16 Score=136.47 Aligned_cols=68 Identities=31% Similarity=0.548 Sum_probs=61.4
Q ss_pred CCCccCccccc------CCCC-CCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccccccc
Q 022733 37 ASKKKNYYELL------GVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 105 (293)
Q Consensus 37 ~~~~~d~Y~iL------gv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~ 105 (293)
+....|||+|| |+++ +++..+||++||+|++++|||+++. +.+.|+.|++||++|+||.+|..||..+
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 35567999999 4665 8999999999999999999999976 6678999999999999999999999975
No 31
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.59 E-value=3.7e-16 Score=119.28 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=49.6
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----hHHHHHHHHHHHHhhcc
Q 022733 41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMR 94 (293)
Q Consensus 41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~~~~i~~Ay~vL~d 94 (293)
.++|++|||+++||.+|||+|||+++++||||++++. +++.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999998753 46799999999999975
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.57 E-value=4.2e-16 Score=122.32 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=51.1
Q ss_pred CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---------hHHHHHHHHHHHHhhccccc
Q 022733 39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---------GHEHTLLLNEAYKVLMRGDL 97 (293)
Q Consensus 39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---------~~~~~~~i~~Ay~vL~d~~~ 97 (293)
...|||+|||++. ||.++||+|||+++++||||+++.. +.+.|+.|++||++|+|+..
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 3479999999996 9999999999999999999997531 36799999999999999863
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.47 E-value=4e-15 Score=152.36 Aligned_cols=73 Identities=41% Similarity=0.635 Sum_probs=40.8
Q ss_pred CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733 36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 108 (293)
Q Consensus 36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~ 108 (293)
......|||+||||+++||.++||+|||+|+++||||+++. .+.+.|+.|++||++|+||.+|..||.++...
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence 34556899999999999999999999999999999999853 35679999999999999999999999988543
No 34
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.25 E-value=6.4e-13 Score=119.12 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=85.0
Q ss_pred CcCCCCCcccc-----cceeeeeCCcceEEEEEecCcccceecccccCCCc------------ceeeeeeecccceEEEE
Q 022733 141 CIGCRECVHHA-----SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV------------NCIHWVDREELPVLEFL 203 (293)
Q Consensus 141 CigC~~C~~~a-----p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg------------~Cig~~~~~e~k~LeV~ 203 (293)
-..|..|.+++ +.+|..|.|.|.....++.+++.++++.+|+.|.| .|.|.+.+.+.+.|+|.
T Consensus 38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~ 117 (248)
T 1nlt_A 38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVH 117 (248)
T ss_dssp EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEE
T ss_pred EEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEEE
Confidence 34555555543 57899999999999889999988889999999987 58888899999999999
Q ss_pred eCCCCCCCcEEecCC------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733 204 IQPQPKKGYGVFGGG------WERPANVFMAAKAFNKQLQQQAAGGSNP 246 (293)
Q Consensus 204 Ip~G~~~G~~I~g~G------~~~~~~vf~~~~~~~~~~~~~~~~~~~~ 246 (293)
||||+++|++|...| ++.|+|||+..+.....+++++.+||+-
T Consensus 118 Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~ 166 (248)
T 1nlt_A 118 VEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY 166 (248)
T ss_dssp ECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred ECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence 999999999997555 2467899999866555556666666664
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.2e-10 Score=81.68 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred ccCcccccCCCCC---CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcc
Q 022733 40 KKNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR 94 (293)
Q Consensus 40 ~~d~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d 94 (293)
....|.||||+++ ++.++|+++||+|+..+|||++++. .....|++|++.|..
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~--yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF--YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHHHHH
Confidence 3467899999999 9999999999999999999998665 556779999999964
No 36
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.91 E-value=7.2e-10 Score=103.22 Aligned_cols=65 Identities=37% Similarity=0.631 Sum_probs=54.5
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----hHHHHHHHHHHHHhhcccccccccccc
Q 022733 40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDAS 104 (293)
Q Consensus 40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~~~~i~~Ay~vL~d~~~R~~YD~~ 104 (293)
..++|.+||+..+++.++|+++|+++++++|||+.+.+ +.+.|+.|++||++|+||++|..||.+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g 450 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG 450 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence 34899999999999999999999999999999998754 456999999999999999999999973
No 37
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=97.80 E-value=7.4e-07 Score=75.90 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=47.2
Q ss_pred cccccCCCcceeeeeeecccceEEEEeCCCCCCCcEEecCC------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733 178 EVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WERPANVFMAAKAFNKQLQQQAAGGSNP 246 (293)
Q Consensus 178 q~ac~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G------~~~~~~vf~~~~~~~~~~~~~~~~~~~~ 246 (293)
...|..|.| .+.+.+.+.|+|.||+|+++|++|...| ++.|||+|+..+......++++.+|++-
T Consensus 27 ~~~c~~c~G----~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~ 97 (181)
T 3agx_A 27 SHKRLNPDG----KSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIY 97 (181)
T ss_dssp EEEEECTTS----SCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred ecccCCCCC----ceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEE
Confidence 344666665 4566777899999999999999997554 2467899998866555555666666654
No 38
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=0.00045 Score=53.13 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=43.5
Q ss_pred cCcCCCCCccc------ccceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEE
Q 022733 140 ACIGCRECVHH------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFL 203 (293)
Q Consensus 140 ~CigC~~C~~~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~ 203 (293)
.-..|..|.+. .+.+|..|.|.|...+.. |+ .+++.+|+.|.| .|.+.+.+.+.+.|+|.
T Consensus 27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~--~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~ 102 (104)
T 2ctt_A 27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GP--FVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102 (104)
T ss_dssp CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TT--EEEEEECSSSSSSSEECSSCCSSSSSCSEECCCCSSCCS
T ss_pred eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CC--EEEEEECCcCCCcceECCCcCCCCCCeeEEEEEEEEEEE
Confidence 34455555543 357899999999765543 54 346778998877 58888888888888886
Q ss_pred e
Q 022733 204 I 204 (293)
Q Consensus 204 I 204 (293)
+
T Consensus 103 ~ 103 (104)
T 2ctt_A 103 S 103 (104)
T ss_dssp C
T ss_pred c
Confidence 5
No 39
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=96.66 E-value=0.00011 Score=62.18 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=40.6
Q ss_pred eeecccceEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733 192 VDREELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 246 (293)
Q Consensus 192 ~~~~e~k~LeV~Ip~G~~~G~~I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~ 246 (293)
+.+.+.+.|+|.||||+++|++|...| ++.+||+|+..+......++++.+|++-
T Consensus 36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~ 97 (180)
T 2q2g_A 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIM 97 (180)
T ss_dssp EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEE
T ss_pred ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEE
Confidence 455667899999999999999997544 2356899998866555555666666654
No 40
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=96.56 E-value=0.00011 Score=61.72 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=38.4
Q ss_pred ccceEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733 196 ELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP 246 (293)
Q Consensus 196 e~k~LeV~Ip~G~~~G~~I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~ 246 (293)
+.+.|+|.||||+++|++|...| ++.+||+|+..+......++++.+|++-
T Consensus 34 ~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~ 91 (170)
T 1c3g_A 34 EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIY 91 (170)
T ss_dssp EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEE
T ss_pred EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeE
Confidence 66799999999999999996544 2457899999866555555666656654
No 41
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=94.50 E-value=0.0064 Score=41.50 Aligned_cols=59 Identities=42% Similarity=0.894 Sum_probs=36.7
Q ss_pred cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceeeee
Q 022733 134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWV 192 (293)
Q Consensus 134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~~ 192 (293)
+.++.+.|++|+.|....|..+.+.+..|...+.......-.........||.++|...
T Consensus 4 ~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 62 (64)
T 1dax_A 4 FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE 62 (64)
T ss_dssp CEECSTTCCSCCHHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECC
T ss_pred EEEccccCCCchHHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeee
Confidence 56788899999999999998777765435544332101111112334567888888653
No 42
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=93.74 E-value=0.0067 Score=43.70 Aligned_cols=58 Identities=28% Similarity=0.548 Sum_probs=38.0
Q ss_pred cccccccCcCCCCCcccccceeeeeCCcceEEEEEecC-------c-ccceecccccCCCcceeeee
Q 022733 134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYG-------D-SDQNIEVSVDSCPVNCIHWV 192 (293)
Q Consensus 134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g-------~-~~~~iq~ac~~Cpg~Cig~~ 192 (293)
++++.++|++|+.|...+|..|.+.+. |...+..+.. . .-.........||.++|...
T Consensus 4 v~vd~~~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~ 69 (81)
T 1iqz_A 4 TIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVA 69 (81)
T ss_dssp EEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEE
T ss_pred EEEecccCcccChhhHhCchheeeCCC-CeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEe
Confidence 567889999999999999988887643 5544322100 0 01123345677999998665
No 43
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=93.73 E-value=0.062 Score=35.40 Aligned_cols=57 Identities=28% Similarity=0.605 Sum_probs=33.4
Q ss_pred cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceeee
Q 022733 134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW 191 (293)
Q Consensus 134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~ 191 (293)
+.++.+.|++|+.|....|..+.+.+..|...+. .....-.....-...||.++|.+
T Consensus 2 i~i~~~~C~~C~~C~~~Cp~~~~~~~~~~~~~~~-~~~~~c~~C~~C~~~CP~~Ai~~ 58 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCPEVFAMIDGEEKAMVT-APDSTAECAQDAIDACPVEAISK 58 (59)
T ss_dssp EEESSCCCSSCCGGGGTSTTTEEEEECSSCEEES-CTTCCCGGGGTGGGGSTTCCEEE
T ss_pred eEEChhhCcChhHHHHHCCHHheecCCCCcEEEe-cChhhhhHHHHHHHhCCHhhEEc
Confidence 4567889999999999999777662233443321 01111111233346678877753
No 44
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=91.08 E-value=0.28 Score=43.17 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=25.6
Q ss_pred ceEEEEeCCC--CCCCcEEecCCCC-------CCCceehhhHH
Q 022733 198 PVLEFLIQPQ--PKKGYGVFGGGWE-------RPANVFMAAKA 231 (293)
Q Consensus 198 k~LeV~Ip~G--~~~G~~I~g~G~~-------~~~~vf~~~~~ 231 (293)
..++|.||+| +..|+.+.++|.| ..||+||..++
T Consensus 189 ~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V 231 (248)
T 1nlt_A 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTI 231 (248)
T ss_dssp CEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEE
T ss_pred CEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEE
Confidence 4689999999 9999998766533 23788887644
No 45
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=90.82 E-value=0.039 Score=37.34 Aligned_cols=58 Identities=28% Similarity=0.555 Sum_probs=35.1
Q ss_pred cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcc-c--ceecccccCCCcceeeee
Q 022733 134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDS-D--QNIEVSVDSCPVNCIHWV 192 (293)
Q Consensus 134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~-~--~~iq~ac~~Cpg~Cig~~ 192 (293)
+.++.+.|++|+.|....|..+.+... |...++....+. . .....-...||.++|...
T Consensus 4 ~~id~~~C~~C~~C~~~Cp~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~ 64 (66)
T 1sj1_A 4 VSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIE 64 (66)
T ss_dssp EEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEECcccCcCchHHHHhCCceEEECCC-CceeecccCCCcHHHHHHHHHHHhhCCHhhEEEe
Confidence 567888999999999999987776532 544332211111 1 112233467888887653
No 46
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=90.00 E-value=0.16 Score=36.31 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=22.6
Q ss_pred cceeeeeCCcceEEEEEecCcccceecccccCCCc
Q 022733 152 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV 186 (293)
Q Consensus 152 p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg 186 (293)
+.+|..|.|.|..... + +++ +++..|+.|.|
T Consensus 28 ~~~C~~C~G~G~~~~~-~-g~~--~~~~~C~~C~G 58 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMR-Q-GFF--AVQQTCPHCQG 58 (79)
T ss_dssp CEECTTTTTSSEEEEE-E-TTE--EEEEECTTTTT
T ss_pred CCCCCCCcCeEEEEEE-c-CCC--EEeeECcCCCC
Confidence 4689999999976543 3 433 46778999988
No 47
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=89.47 E-value=0.072 Score=35.16 Aligned_cols=55 Identities=29% Similarity=0.629 Sum_probs=32.0
Q ss_pred cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceee
Q 022733 134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH 190 (293)
Q Consensus 134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig 190 (293)
+.++ +.|++|+.|....|..+.+.+. |...++......-.....-...||.++|.
T Consensus 2 v~id-~~C~~C~~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~ 56 (58)
T 1f2g_A 2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIV 56 (58)
T ss_dssp CBCT-TTCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCSTHHHHHHHTCSSCCCB
T ss_pred cEEC-CcCccchHHHHhCCccEEECCC-CcEEEeCCCccchHHHHHHHhhCChhhEE
Confidence 4577 8999999999999987666443 43333221011111122334567887764
No 48
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=88.11 E-value=0.1 Score=34.45 Aligned_cols=26 Identities=35% Similarity=0.834 Sum_probs=20.8
Q ss_pred cccccccCcCCCCCcccccceeeeeC
Q 022733 134 LFVDENACIGCRECVHHASNTFVMDE 159 (293)
Q Consensus 134 ifvd~~~CigC~~C~~~ap~tf~~c~ 159 (293)
+.++.+.|++|+.|....|..+.+.+
T Consensus 3 ~~i~~~~C~~C~~C~~~Cp~~~~~~~ 28 (60)
T 1rof_A 3 VRVDADACIGCGVCENLCPDVFQLGD 28 (60)
T ss_dssp SEECTTTCCSCCSSTTTCTTTBCCCS
T ss_pred EEEchhhCCCChHHHHhCcHHHeECC
Confidence 45778899999999999997665543
No 49
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.73 E-value=0.38 Score=47.91 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=37.5
Q ss_pred CCccCcccccCCCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHh
Q 022733 38 SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKV 91 (293)
Q Consensus 38 ~~~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~v 91 (293)
...+|||.+||++.+... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHhccc
Confidence 445569999999777655 77999999999977655 3678888888775
No 50
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=85.19 E-value=0.73 Score=35.28 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=24.9
Q ss_pred eEEEEeCCCCCCCcEEecCCCC-----CCCceehhhH
Q 022733 199 VLEFLIQPQPKKGYGVFGGGWE-----RPANVFMAAK 230 (293)
Q Consensus 199 ~LeV~Ip~G~~~G~~I~g~G~~-----~~~~vf~~~~ 230 (293)
.++|.||+|+..|+.+..+|.| ..||+||...
T Consensus 39 ~~~v~ip~g~~~G~~~rl~G~G~p~~~~~GDL~v~~~ 75 (109)
T 3i38_A 39 SILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVIK 75 (109)
T ss_dssp CEEEEECTTCCTTCEEEETTCSCBCSSCBCCEEEEEE
T ss_pred CEEEeeCCCcCcCeEEEECCccCCCCCCCcCEEEEEE
Confidence 5899999999999999766643 3468777653
No 51
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=79.38 E-value=3.1 Score=32.27 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=24.7
Q ss_pred ceEEEEeCCC--CCCCcEEecCCCC-------CCCceehhhH
Q 022733 198 PVLEFLIQPQ--PKKGYGVFGGGWE-------RPANVFMAAK 230 (293)
Q Consensus 198 k~LeV~Ip~G--~~~G~~I~g~G~~-------~~~~vf~~~~ 230 (293)
+.++|.||+| +..|+.+..+|.| ..||+||...
T Consensus 34 ~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~ 75 (121)
T 1xao_A 34 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFT 75 (121)
T ss_dssp CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEE
T ss_pred CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence 4689999999 9999998765533 3478887653
No 52
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=68.24 E-value=1.3 Score=30.78 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=19.2
Q ss_pred cccccccCcCCCCCcccccc-eeeeeC
Q 022733 134 LFVDENACIGCRECVHHASN-TFVMDE 159 (293)
Q Consensus 134 ifvd~~~CigC~~C~~~ap~-tf~~c~ 159 (293)
+.++.+.|++|+.|....|. .+.+.+
T Consensus 3 ~~~~~~~C~~Cg~C~~~CP~~a~~~~~ 29 (80)
T 1jb0_C 3 TVKIYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_dssp EEEEETTCCCCCHHHHHCTTCCCEEEE
T ss_pred CcccCCcCcChhHHHHHCCcccccccc
Confidence 45667899999999998884 444443
No 53
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=66.45 E-value=1.7 Score=31.83 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred CccccccccCcCCCCCcccccc-eeeee
Q 022733 132 EALFVDENACIGCRECVHHASN-TFVMD 158 (293)
Q Consensus 132 ~difvd~~~CigC~~C~~~ap~-tf~~c 158 (293)
..+.++.+.|++|+.|...+|. .+.+.
T Consensus 36 ~~~~id~~~C~~Cg~C~~~CP~~ai~~~ 63 (103)
T 1xer_A 36 TIVGVDFDLCIADGSCINACPVNVFQWY 63 (103)
T ss_dssp SSEEEETTTCCCCCHHHHHCTTCCCEEE
T ss_pred ceEEEehhhCCChhhHHHHcCccCeecc
Confidence 3467888999999999998884 44443
No 54
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=54.08 E-value=12 Score=30.64 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=25.3
Q ss_pred ceEEEEeCCCCCCCcEEecCCCC--------CCCceehhhHH
Q 022733 198 PVLEFLIQPQPKKGYGVFGGGWE--------RPANVFMAAKA 231 (293)
Q Consensus 198 k~LeV~Ip~G~~~G~~I~g~G~~--------~~~~vf~~~~~ 231 (293)
..++|.||+|+..|+.+..+|.| ..||+||..++
T Consensus 114 ~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V 155 (170)
T 1c3g_A 114 RTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKV 155 (170)
T ss_dssp CEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECC
T ss_pred CEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEE
Confidence 36789999999999999766533 23788876643
No 55
>1vda_A FMBP-1, fibroin-modulator-binding-protein-1; tandem repeat, N-CAP, DNA binding, transcription; NMR {Synthetic} PDB: 1wnn_A
Probab=53.67 E-value=6.1 Score=21.68 Aligned_cols=10 Identities=70% Similarity=0.860 Sum_probs=8.1
Q ss_pred CChHHHHHHH
Q 022733 256 ETPAQAEARA 265 (293)
Q Consensus 256 ~~~~~~~~~~ 265 (293)
|||+|+.+|-
T Consensus 1 esp~qr~~rl 10 (26)
T 1vda_A 1 ETPAQRQARL 10 (26)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7899998874
No 56
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=49.73 E-value=8.4 Score=39.20 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=22.2
Q ss_pred ceecccccCCCcceeeeeeecccceEEEEe
Q 022733 175 QNIEVSVDSCPVNCIHWVDREELPVLEFLI 204 (293)
Q Consensus 175 ~~iq~ac~~Cpg~Cig~~~~~e~k~LeV~I 204 (293)
..+..+|+.|+..|.-...+.+-+++.|.-
T Consensus 250 ~~~~s~C~~C~~gC~i~v~v~~g~v~rv~~ 279 (783)
T 3i9v_3 250 EETPTTCALCPVGCGITADTRSGELLRIRA 279 (783)
T ss_dssp EEEEEECCSSSSCCEEEEEEETBEEEEEEE
T ss_pred eEEEEeCCCCCCcccceeeeECCEEEeccC
Confidence 456778999999998777777766666654
No 57
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=48.95 E-value=15 Score=30.21 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=24.7
Q ss_pred eEEEEeCCCCCCCcEEecCCCC--------CCCceehhhHH
Q 022733 199 VLEFLIQPQPKKGYGVFGGGWE--------RPANVFMAAKA 231 (293)
Q Consensus 199 ~LeV~Ip~G~~~G~~I~g~G~~--------~~~~vf~~~~~ 231 (293)
.++|.+|+|+..|+.+..+|.| ..||+||..++
T Consensus 121 ~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V 161 (180)
T 2q2g_A 121 NLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDI 161 (180)
T ss_dssp EEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEE
T ss_pred EEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEE
Confidence 6889999999999998755532 23788876643
No 58
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=47.96 E-value=3.3 Score=43.42 Aligned_cols=58 Identities=28% Similarity=0.642 Sum_probs=32.5
Q ss_pred ccccccccCcCCCCCccccc----ceeeeeCCcceEEEEEecCcccceecccccCCCc-ceeeeeee
Q 022733 133 ALFVDENACIGCRECVHHAS----NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV-NCIHWVDR 194 (293)
Q Consensus 133 difvd~~~CigC~~C~~~ap----~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg-~Cig~~~~ 194 (293)
.+.++.+.|++|+.|...+| ..+.+.+..+...+ . ..-..+..-...||. +||.....
T Consensus 945 ~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~~~-~---~~C~~Cg~C~~~CP~~~Ai~~~~~ 1007 (1025)
T 1gte_A 945 VAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTV-T---DTCTGCTLCLSVCPIIDCIRMVSR 1007 (1025)
T ss_dssp EEEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEE-C---TTCCCCCHHHHHCSSTTTEEEEEC
T ss_pred eEEEEcccCcccCHHHHhcCccccCCEEEeCCCceEEe-C---ccCCChhHHHhhCCCCCCEEEecC
Confidence 34577889999999999998 44555444332221 1 101112222234677 78866543
No 59
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=46.80 E-value=28 Score=28.58 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=25.1
Q ss_pred ceEEEEeCCCCCCCcEEecCCCC--------CCCceehhhHH
Q 022733 198 PVLEFLIQPQPKKGYGVFGGGWE--------RPANVFMAAKA 231 (293)
Q Consensus 198 k~LeV~Ip~G~~~G~~I~g~G~~--------~~~~vf~~~~~ 231 (293)
..++|.||+|+..|+.+..+|.| ..||+||..++
T Consensus 120 ~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V 161 (181)
T 3agx_A 120 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEV 161 (181)
T ss_dssp CEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEE
T ss_pred CEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEE
Confidence 36899999999999998755532 23788876643
No 60
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=42.50 E-value=18 Score=32.83 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=24.1
Q ss_pred EEEEeCCCCCCCcEEecCCCCCC-----CceehhhH
Q 022733 200 LEFLIQPQPKKGYGVFGGGWERP-----ANVFMAAK 230 (293)
Q Consensus 200 LeV~Ip~G~~~G~~I~g~G~~~~-----~~vf~~~~ 230 (293)
++|.||+|+..|+.++++|.|-| ||+||..+
T Consensus 260 v~l~ip~gt~~g~~~rl~G~GmP~~~~rGDL~v~~~ 295 (329)
T 3lz8_A 260 ILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVIK 295 (329)
T ss_dssp EEEEECTTCCTTCEEEETTCSCBCSSCBCCEEEEEE
T ss_pred EEEEECCCCCCCCEEEEcCCCCCCCCCCCCEEEEEE
Confidence 68999999999999987775444 67776653
No 61
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=40.25 E-value=9.9 Score=30.57 Aligned_cols=17 Identities=29% Similarity=0.765 Sum_probs=14.5
Q ss_pred ccccCcCCCCCcccccc
Q 022733 137 DENACIGCRECVHHASN 153 (293)
Q Consensus 137 d~~~CigC~~C~~~ap~ 153 (293)
+.+.|++|+.|...+|.
T Consensus 49 d~~~Ci~C~~C~~~CP~ 65 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPA 65 (182)
T ss_dssp SCBSCCCCCHHHHHCTT
T ss_pred CCccCcccccchhhCCc
Confidence 45799999999988885
No 62
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=37.02 E-value=8.1 Score=31.41 Aligned_cols=20 Identities=35% Similarity=0.896 Sum_probs=15.9
Q ss_pred cccccccCcCCC-----CCcccccc
Q 022733 134 LFVDENACIGCR-----ECVHHASN 153 (293)
Q Consensus 134 ifvd~~~CigC~-----~C~~~ap~ 153 (293)
++++.+.|++|+ .|...+|.
T Consensus 2 v~id~~~C~gC~~c~~~~C~~~CP~ 26 (166)
T 3gyx_B 2 TYVDPSKCDGCKGGEKTACMYICPN 26 (166)
T ss_dssp EEECTTTCCCCCSSSCCHHHHHCTT
T ss_pred CEEcchhcCCCCCCCcchhHHhCCc
Confidence 457888999999 78777775
No 63
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=34.38 E-value=30 Score=30.45 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.0
Q ss_pred cccccccCcCCCCCcccccc
Q 022733 134 LFVDENACIGCRECVHHASN 153 (293)
Q Consensus 134 ifvd~~~CigC~~C~~~ap~ 153 (293)
+.++.+.|++|+.|...+|.
T Consensus 92 v~id~~~CigC~~C~~~CP~ 111 (274)
T 1ti6_B 92 VLIDPEKAKGKKELLDTCPY 111 (274)
T ss_dssp EEECTTTTTTCGGGGGGCSS
T ss_pred EEechhhccchHHHHhhCcc
Confidence 56788899999999988875
No 64
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=33.85 E-value=16 Score=25.39 Aligned_cols=19 Identities=26% Similarity=0.714 Sum_probs=16.1
Q ss_pred ccccccCcCCCCCcccccc
Q 022733 135 FVDENACIGCRECVHHASN 153 (293)
Q Consensus 135 fvd~~~CigC~~C~~~ap~ 153 (293)
+++.+.|++|+.|....|.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~ 20 (82)
T 3eun_A 2 LMITDECINCDVCEPECPN 20 (82)
T ss_dssp EEECTTCCCCCTTGGGCTT
T ss_pred eEeCCCCcCccchHHHCCh
Confidence 4567899999999998886
No 65
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.62 E-value=32 Score=24.90 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCChHHHHHHHHHHHHHhh-hhhhHHHH
Q 022733 255 KETPAQAEARASASMKIKM-ERFSIIWN 281 (293)
Q Consensus 255 ~~~~~~~~~~~~a~~~~~~-~~~~~~~~ 281 (293)
...|-=+|||++|+.+++. +.+.+||.
T Consensus 56 ~~NpcIReaRRrAV~EvQ~lit~lDlke 83 (89)
T 2d9d_A 56 EKNPCIREARRRAVIEVQTLITYIDLKE 83 (89)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999998874 67777764
No 66
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=32.81 E-value=17 Score=25.38 Aligned_cols=19 Identities=26% Similarity=0.684 Sum_probs=15.9
Q ss_pred ccccccCcCCCCCcccccc
Q 022733 135 FVDENACIGCRECVHHASN 153 (293)
Q Consensus 135 fvd~~~CigC~~C~~~ap~ 153 (293)
+++.+.|++|+.|....|.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~ 20 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPN 20 (85)
T ss_dssp EEECTTCCCCCTTTTTCTT
T ss_pred EEeCCcCcChhHHHHHCch
Confidence 4566799999999998885
No 67
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=32.39 E-value=8.8 Score=37.96 Aligned_cols=20 Identities=40% Similarity=0.918 Sum_probs=16.9
Q ss_pred ccccccccCcCCCCCccccc
Q 022733 133 ALFVDENACIGCRECVHHAS 152 (293)
Q Consensus 133 difvd~~~CigC~~C~~~ap 152 (293)
..++.++.|+||+.|+..+|
T Consensus 47 ~~~i~~~~c~~~~~~~~~cp 66 (608)
T 3j16_B 47 IAFISEILCIGCGICVKKCP 66 (608)
T ss_dssp EEEECTTTCCCCCHHHHHCS
T ss_pred ceEEehhhccccccccccCC
Confidence 45788999999999997666
No 68
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=31.20 E-value=20 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=15.9
Q ss_pred ccccccCcCCCCCcccccc
Q 022733 135 FVDENACIGCRECVHHASN 153 (293)
Q Consensus 135 fvd~~~CigC~~C~~~ap~ 153 (293)
+++.+.|++|+.|....|.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~ 20 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPN 20 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTT
T ss_pred ceeCCCCCChhhHHHHCCh
Confidence 3566789999999998885
No 69
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=30.95 E-value=22 Score=24.35 Aligned_cols=19 Identities=26% Similarity=0.753 Sum_probs=15.8
Q ss_pred ccccccCcCCCCCcccccc
Q 022733 135 FVDENACIGCRECVHHASN 153 (293)
Q Consensus 135 fvd~~~CigC~~C~~~ap~ 153 (293)
+++.+.|++|+.|....|.
T Consensus 2 ~~~~~~C~~C~~C~~~CP~ 20 (80)
T 1rgv_A 2 LYINDDCTACDACVEECPN 20 (80)
T ss_dssp BCCCSCCCCCCTTTTTCTT
T ss_pred eEeCCCCcChhhHHHHcCh
Confidence 3566789999999998885
No 70
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=30.01 E-value=12 Score=36.53 Aligned_cols=22 Identities=32% Similarity=0.765 Sum_probs=18.9
Q ss_pred CccccccccCcCCCCCcccccc
Q 022733 132 EALFVDENACIGCRECVHHASN 153 (293)
Q Consensus 132 ~difvd~~~CigC~~C~~~ap~ 153 (293)
..++++.+.|++|+.|...+|.
T Consensus 138 ~~i~~d~~kCi~Cg~Cv~~CP~ 159 (574)
T 3c8y_A 138 KSLTVDRTKCLLCGRCVNACGK 159 (574)
T ss_dssp SSEEEEGGGCCCCCHHHHHHHH
T ss_pred CcceeCcccCcCCCCccchhCc
Confidence 3577889999999999998885
No 71
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=29.24 E-value=20 Score=23.52 Aligned_cols=11 Identities=9% Similarity=-0.052 Sum_probs=5.3
Q ss_pred ceeeeeCCcce
Q 022733 153 NTFVMDEATGC 163 (293)
Q Consensus 153 ~tf~~c~g~G~ 163 (293)
+.|..|.|.|.
T Consensus 24 ~~C~~C~G~G~ 34 (53)
T 3lcz_A 24 EPCPKCLGKGV 34 (53)
T ss_dssp EECTTTTTSSE
T ss_pred CcCCCCCCcEE
Confidence 34555555543
No 72
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=27.51 E-value=9.1 Score=38.94 Aligned_cols=21 Identities=29% Similarity=0.770 Sum_probs=17.1
Q ss_pred ccccccccCcCCCCCcccccc
Q 022733 133 ALFVDENACIGCRECVHHASN 153 (293)
Q Consensus 133 difvd~~~CigC~~C~~~ap~ 153 (293)
.+.++.++|++|+.|+..+++
T Consensus 173 ~i~~d~~~CI~C~~Cv~~C~~ 193 (783)
T 3i9v_3 173 FVILDRERCIHCKRCVRYFEE 193 (783)
T ss_dssp TEEECTTTCCCCCHHHHHHHH
T ss_pred cEEEchhhCCCccHHHHHhhh
Confidence 456688999999999987754
No 73
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=26.92 E-value=13 Score=29.65 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=19.6
Q ss_pred cccccccCcCCC-----CCcccccc-eeeeeCC
Q 022733 134 LFVDENACIGCR-----ECVHHASN-TFVMDEA 160 (293)
Q Consensus 134 ifvd~~~CigC~-----~C~~~ap~-tf~~c~g 160 (293)
++++.+.|++|+ .|...+|. ...+..+
T Consensus 3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~ 35 (150)
T 1jnr_B 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKE 35 (150)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETT
T ss_pred eEECcccCCCCCCcccccchhhcCccCeEEecC
Confidence 457788999999 99988885 3344444
No 74
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=26.52 E-value=12 Score=35.12 Aligned_cols=22 Identities=32% Similarity=0.792 Sum_probs=18.6
Q ss_pred ccccccccCcCCCCCcccccce
Q 022733 133 ALFVDENACIGCRECVHHASNT 154 (293)
Q Consensus 133 difvd~~~CigC~~C~~~ap~t 154 (293)
.+.++.+.|++|+.|...+|..
T Consensus 27 ~i~~d~~kCi~Cg~C~~~CP~~ 48 (421)
T 1hfe_L 27 FVQIDEAKCIGCDTCSQYCPTA 48 (421)
T ss_dssp SEEECTTTCCCCCHHHHHCTTC
T ss_pred eEEECcccCCCccHHHHhcCcC
Confidence 4667889999999999888863
No 75
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=26.45 E-value=15 Score=30.51 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=18.5
Q ss_pred ccccccccCcCCCCCccccccee
Q 022733 133 ALFVDENACIGCRECVHHASNTF 155 (293)
Q Consensus 133 difvd~~~CigC~~C~~~ap~tf 155 (293)
.+++|.+.|++|+.|...++...
T Consensus 5 ~~~iD~~~CigC~~C~~aC~~~~ 27 (195)
T 2vpz_B 5 AMAIDLSLCVGCAACAVACKMEN 27 (195)
T ss_dssp EEEEETTTCCCCCHHHHHHHHHT
T ss_pred eEEeeHHHCcChhHHHHHhhHhh
Confidence 36789999999999997776543
No 76
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=22.98 E-value=31 Score=22.60 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=5.5
Q ss_pred ceeeeeCCcce
Q 022733 153 NTFVMDEATGC 163 (293)
Q Consensus 153 ~tf~~c~g~G~ 163 (293)
.+|..|.+.|.
T Consensus 24 ~~C~~C~G~G~ 34 (53)
T 2bx9_A 24 TPCPACSGKGV 34 (53)
T ss_dssp EECTTTTTSSE
T ss_pred CCCccCCCCcc
Confidence 34555555554
No 77
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=22.19 E-value=33 Score=24.95 Aligned_cols=17 Identities=24% Similarity=0.759 Sum_probs=9.2
Q ss_pred cccccCcCCCCCccccc
Q 022733 136 VDENACIGCRECVHHAS 152 (293)
Q Consensus 136 vd~~~CigC~~C~~~ap 152 (293)
++...|++|+.|...+|
T Consensus 34 i~~~~C~~Cg~C~~~CP 50 (106)
T 7fd1_A 34 IHPDECIDCALCEPECP 50 (106)
T ss_dssp ECTTTCCCCCTTGGGCT
T ss_pred ECcccCCChhhhHHhCC
Confidence 44455666666654444
No 78
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=21.18 E-value=48 Score=26.20 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 022733 42 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDI 73 (293)
Q Consensus 42 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~ 73 (293)
-++..|.|....+.+|++++=..+..++|||-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 44788889888999999999999999999995
No 79
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=20.97 E-value=52 Score=30.13 Aligned_cols=20 Identities=35% Similarity=0.795 Sum_probs=15.1
Q ss_pred cccccccCcCCCCCcccccc
Q 022733 134 LFVDENACIGCRECVHHASN 153 (293)
Q Consensus 134 ifvd~~~CigC~~C~~~ap~ 153 (293)
+.++.+.|++|+.|...+|.
T Consensus 177 v~id~~kCigCg~Cv~aCP~ 196 (352)
T 2ivf_B 177 VLVDQERCKGHRHCVEACPY 196 (352)
T ss_dssp EEECTTTCCCCCHHHHHCTT
T ss_pred EEechhhcCCchHHHhhcCc
Confidence 44567788888888877765
No 80
>1du9_A BMP02 neurotoxin; helix, sheet; NMR {Mesobuthus martensii} SCOP: g.3.7.2 PDB: 1wm8_A
Probab=20.96 E-value=11 Score=21.37 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=9.7
Q ss_pred cccCCCcceeeee
Q 022733 180 SVDSCPVNCIHWV 192 (293)
Q Consensus 180 ac~~Cpg~Cig~~ 192 (293)
.|+.||-+|.+..
T Consensus 2 gCeecP~HC~~k~ 14 (28)
T 1du9_A 2 GCEECPMHCKGKN 14 (28)
T ss_dssp CTTSHHHHSCSSS
T ss_pred ccccchhhhcccc
Confidence 5888888887654
Done!