BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022734
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VYS4|GLD2B_DROME Poly(A) RNA polymerase gld-2 homolog B OS=Drosophila melanogaster
GN=wisp PE=1 SV=1
Length = 1373
Score = 89.0 bits (219), Expect = 4e-17, Method: Composition-based stats.
Identities = 46/98 (46%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 113 ARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAKAHDI 171
ARVPIL+F+ I I D++ +N C IK+ +L + +Q+D R R +V++VK WA+ HDI
Sbjct: 1086 ARVPILRFKDISNGIEVDLNFNN-CVGIKNTYLLQLYAQMDWRTRPLVVIVKLWAQYHDI 1144
Query: 172 NNPKTGTFNSYSLSLLVLFHFQ-TCVPAILPPLKDIYP 208
N+ K T +SYSL L+VL + Q CVP +LP L +YP
Sbjct: 1145 NDAKRMTISSYSLVLMVLHYLQHACVPHVLPCLHSLYP 1182
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1
Length = 484
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 18/210 (8%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLR---ALRQKGGYRRLQFV 110
GS ++ +R D D+ + + C +K + + L+ R G R Q +
Sbjct: 201 GSSLNGFGARSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLI 260
Query: 111 AHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAKAH 169
A+VPI+KF + D++++N G I++ FL + ++ R R +VL++K+WA H
Sbjct: 261 -RAKVPIVKFRDKVSCVEFDLNVNNTVG-IRNTFLLRTYAYLENRVRPLVLVIKKWASHH 318
Query: 170 DINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEI 229
DIN+ GT +SYSL L+VL + QT ILP L+ IYP + + + +
Sbjct: 319 DINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYP-------ESFSTSVQLHLVHH 371
Query: 230 CAFNIARFSSDKYRKINRSSLAHLFVSFLE 259
N+ + S N SSL L + FL+
Sbjct: 372 APCNVPPYLSK-----NESSLGDLLLGFLK 396
>sp|Q9VD44|GLD2A_DROME Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster
GN=Gld2 PE=1 SV=3
Length = 1364
Score = 85.9 bits (211), Expect = 4e-16, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHA 113
GS +S S+ D+DI + I S + V L + L + ++ + A
Sbjct: 981 GSSISYFGSKCSDMDICMLACTNPNIDSRMEAVYH--LHVMKELLGRTNMFQDFNLI-EA 1037
Query: 114 RVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINN 173
RVPIL+F + DI+ +N G + L+ SQ+D R R M L VK+WA+ H+INN
Sbjct: 1038 RVPILRFTDRCHKVEVDINFNNSVGIRNTHLLYCYSQLDWRVRPMALTVKQWAQYHNINN 1097
Query: 174 PKTGTFNSYSLSLLVLFHFQT-CVPAILPPLKDIYP 208
K T +SYSL L+V+ Q P +LP L ++YP
Sbjct: 1098 AKNMTISSYSLMLMVIHFLQVGASPPVLPCLHNLYP 1133
>sp|Q2HJ44|GLD2_BOVIN Poly(A) RNA polymerase GLD2 OS=Bos taurus GN=PAPD4 PE=2 SV=1
Length = 484
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLR---ALRQKGGYRRLQFV 110
GS ++ +R D D+ + + C +K + + L+ R G R Q +
Sbjct: 201 GSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLI 260
Query: 111 AHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAKAH 169
A+VPI+KF + D++++N+ G I++ FL + ++ R R +VL++K+WA H
Sbjct: 261 -RAKVPIVKFRDKVSCVEFDLNVNNIVG-IRNTFLLRTYAYLENRVRPLVLVIKKWASHH 318
Query: 170 DINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYP 208
DIN+ GT +SYSL L+VL + QT ILP ++ IYP
Sbjct: 319 DINDASRGTLSSYSLVLMVLHYLQTLPEPILPSIQKIYP 357
>sp|Q5U315|GLD2_RAT Poly(A) RNA polymerase GLD2 OS=Rattus norvegicus GN=Papd4 PE=2 SV=1
Length = 484
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 18/210 (8%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLR---ALRQKGGYRRLQFV 110
GS ++ +R D D+ + + C +K + + L+ R G R Q +
Sbjct: 201 GSSLNGFGARSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLI 260
Query: 111 AHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAKAH 169
A+VPI+KF + D++++N G I++ FL + ++ R R +VL++K+WA H
Sbjct: 261 -RAKVPIVKFRDKVSCVEFDLNVNNTVG-IRNTFLLRTYAYLENRVRPLVLVIKKWASHH 318
Query: 170 DINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEI 229
+IN+ GT +SYSL L+VL + QT ILP L+ IYP + + + +
Sbjct: 319 EINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYP-------ESFSTSVQLHLVHH 371
Query: 230 CAFNIARFSSDKYRKINRSSLAHLFVSFLE 259
N+ + S N SSL L + FL+
Sbjct: 372 APCNVPPYLSK-----NESSLGDLLLGFLK 396
>sp|Q6PIY7|GLD2_HUMAN Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1
Length = 484
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 6/159 (3%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLR---ALRQKGGYRRLQFV 110
GS ++ +R D D+ + + C +K + + L+ R G R Q +
Sbjct: 201 GSSLNGFGTRSSDGDLCLVVKEEPCFFQVNQKTEARHILTLVHKHFCTRLSGYIERPQLI 260
Query: 111 AHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAKAH 169
A+VPI+KF + D++++N+ G I++ FL + ++ R R +VL++K+WA H
Sbjct: 261 -RAKVPIVKFRDKVSCVEFDLNVNNIVG-IRNTFLLRTYAYLENRVRPLVLVIKKWASHH 318
Query: 170 DINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYP 208
IN+ GT +SYSL L+VL + QT ILP L+ IYP
Sbjct: 319 QINDASRGTLSSYSLVLMVLHYLQTLPEPILPSLQKIYP 357
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid11 PE=3 SV=1
Length = 478
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 18 LNPLREDWETRMKVISDLREVVESVESLRGATVE--PFGSFVSNLFSRWGDLDISIELSN 75
L P E+ R + + LR ++ + ++ A ++ FGS +NL + D+D+
Sbjct: 58 LKPSNEEVSRRQQFVDKLRTILST--EIKDAKLDLFVFGSTENNLAIQQSDVDV------ 109
Query: 76 GSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDN 135
CI + G K S L L G +++ V+ ARVPI+K +I CD++I+N
Sbjct: 110 --CIITNGSKYLNSTCQ--LAQLLYSYGMKQIVCVSRARVPIVKIWDPQFDIHCDLNINN 165
Query: 136 LCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDI-NNPKTGTFNSYSLSLLVLFHFQT 194
+I +K L ID R R + L++K WAK + + +GT SY++S +++ QT
Sbjct: 166 DVAKINTKMLRLFVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCMLVNFLQT 225
Query: 195 CVPAILPPLKDIYPGN----LVDDLKGVRANA 222
P ILP + D+ + VDD+ G + A
Sbjct: 226 RNPPILPAMLDLMSNDDNKMFVDDIVGFKEKA 257
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+KD + ++P RE+ E R + IS +RE V+ + A + FGS+ ++L+ D+D
Sbjct: 183 IKDFVAYISPSREEIEIRNQTISTIREAVKQL--WPDADLHVFGSYSTDLYLPGSDIDCV 240
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCD 130
+ S G K ++ L L L++K ++ VA ARVPI+KF H I D
Sbjct: 241 V-------TSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHID 293
Query: 131 ISIDNLCGQIKSKFL-FWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVL 189
+S + G +K + W+ G R++VL+VK++ A +NN TG +S+ LV
Sbjct: 294 VSFERTNGIEAAKLIREWLDDTPG-LRELVLIVKQFLHARRLNNVHTGGLGGFSIICLV- 351
Query: 190 FHFQTCVPAIL 200
F F P I+
Sbjct: 352 FSFLHMHPRII 362
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1
SV=1
Length = 509
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 7/157 (4%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGY-RRLQFVAH 112
GS ++ +R D D+ + L +LG L + + Y RLQF+
Sbjct: 228 GSSLNGFGTRISDADLCLVLKEEPMNQHTEAT---QILGLLHKLFYTRLSYIERLQFI-R 283
Query: 113 ARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAKAHDI 171
A+VPI+KF D++++N+ G I++ FL + ++ R R +VL++K+WA H I
Sbjct: 284 AKVPIVKFRDKVSGAEFDLNVNNVVG-IRNTFLLRTYAYLESRVRPLVLVIKKWANHHGI 342
Query: 172 NNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYP 208
N+ GT +SY+L L+VL + QT ILP L+ YP
Sbjct: 343 NDASRGTLSSYTLVLMVLHYLQTLPEPILPSLQKKYP 379
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1
SV=1
Length = 509
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 15/161 (9%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAH- 112
GS ++ R D D+ C+ + + Q+ + +L K Y RL ++
Sbjct: 228 GSSLNGFGIRSSDADL--------CLVLKEEPMNQNTEARHILSLLHKHFYTRLSYIERP 279
Query: 113 ----ARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAK 167
A+VPI+KF D++++N+ G I++ FL + +D R R +VL++K+WA
Sbjct: 280 QFIRAKVPIVKFRDKVSGAEFDLNVNNVVG-IRNTFLLRTYAYLDKRVRPLVLVIKKWAN 338
Query: 168 AHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYP 208
H IN+ GT +SY++ L+VL + QT ILP L+ YP
Sbjct: 339 HHGINDASRGTLSSYTIVLMVLHYLQTLPEPILPSLQKKYP 379
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 35 LREVVESV--ESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSL-- 90
+R+ +ES + G + FGS + + DLD+ C++ G + + L
Sbjct: 1021 IRQNLESFIKQDFPGTKLSLFGSSKNGFGFKQSDLDV--------CMTINGHETAEGLDC 1072
Query: 91 ---LGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFW 147
+ +L R LR+ G R + + A+VPI+KF + + DIS+ N ++ L
Sbjct: 1073 VRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHNTRLLSA 1132
Query: 148 ISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIY 207
S ID R + + +K + K DI + G+ +SY+ +L+VL+ Q P ++P L++IY
Sbjct: 1133 YSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQQRSPPVIPVLQEIY 1192
Query: 208 PG 209
G
Sbjct: 1193 KG 1194
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 85/184 (46%), Gaps = 14/184 (7%)
Query: 34 DLREVVESV--ESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLL 91
+++ V+ESV L ++ +GS S L R D D++I++ + +S + +L
Sbjct: 318 EIKRVMESVFRHKLPDCSLRLYGSSCSRLGFR--DSDVNIDVQFPAVMS------QPDVL 369
Query: 92 GDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQI 151
+ L+ + + HARVP++ + C +S N + +K L + ++
Sbjct: 370 LLVQECLKNSDSFIDVDADFHARVPVVVCRDKQSGLLCKVSAGNENAWLTTKHLTALGKL 429
Query: 152 DGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNL 211
+ R +V+ + WAK I+ P+ G Y +L+ +F Q +LP +Y G+
Sbjct: 430 EPRLVPLVIAFRYWAKLCSIDRPEEGGLPPYVFALMAVFFLQQRKEPLLP----VYLGSW 485
Query: 212 VDDL 215
+++
Sbjct: 486 IEEF 489
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2
Length = 1644
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 4/207 (1%)
Query: 6 VLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWG 65
+L+ + K L+P + R +++ L + ++ E A + FGS + R
Sbjct: 967 ILDLVCKRCFDELSPPCSEQHNREQILIGLEKFIQK-EYDEKARLCLFGSSKNGFGFRDS 1025
Query: 66 DLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQ 125
DLDI + L +A K + ++ +L + L++ G R + + A+VPI+KFE
Sbjct: 1026 DLDICMTLEGHE---NAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKFEHRRS 1082
Query: 126 NISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLS 185
+ DIS+ N Q ++ L + ID R + + +K +AK DI + G+ +SY+
Sbjct: 1083 GLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYI 1142
Query: 186 LLVLFHFQTCVPAILPPLKDIYPGNLV 212
L+VL+ Q P ++P L++I+ G +
Sbjct: 1143 LMVLYFLQQRKPPVIPVLQEIFDGKQI 1169
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 10/179 (5%)
Query: 23 EDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSA 82
+D R ++ ++ +V+ + L ++ +GS ++ + D++I I+
Sbjct: 391 DDLRIRQDIVEEMSKVIMTF--LPECSLRLYGSSLTKFALKSSDVNIDIKF--------P 440
Query: 83 GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKS 142
K LL +L L++ Y ++ HA+VP++ + + C +S N + +
Sbjct: 441 PKMNHPDLLIQVLGILKKSALYIDVESDFHAKVPVVVCKDRKSALLCRVSAGNDMACLTT 500
Query: 143 KFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201
L + +++ F +VL + WAK I++ G SY +L+V+F Q P +LP
Sbjct: 501 DLLAALGKVEPVFTPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLP 559
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 103/207 (49%), Gaps = 4/207 (1%)
Query: 6 VLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWG 65
+L+ + K L+P + R +++ L + ++ E A + FGS + R
Sbjct: 950 ILDLVCKRCFDELSPPCSEQHNREQILIGLEKFIQK-EYDEKARLCLFGSSKNGFGFRDS 1008
Query: 66 DLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQ 125
DLDI + L +A K + ++ +L + L++ G R + + A+VPI+KFE
Sbjct: 1009 DLDICMTLEGHE---NAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKFEHRRS 1065
Query: 126 NISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLS 185
+ DIS+ N Q ++ L + ID R + + +K +AK DI + G+ +SY+
Sbjct: 1066 GLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDIGDASRGSLSSYAYI 1125
Query: 186 LLVLFHFQTCVPAILPPLKDIYPGNLV 212
L+VL+ Q P ++P L++I+ G +
Sbjct: 1126 LMVLYFLQQRKPPVIPVLQEIFDGKQI 1152
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 10/179 (5%)
Query: 23 EDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSA 82
+D R +++ ++ +V+ + L ++ +GS ++ + D++I I+
Sbjct: 371 DDLRVRQEIVEEMSKVITTF--LPECSLRLYGSSLTRFALKSSDVNIDIKF--------P 420
Query: 83 GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKS 142
K LL +L L++ Y ++ HA+VP++ + C +S N + +
Sbjct: 421 PKMNHPDLLIKVLGILKKNVLYVDVESDFHAKVPVVVCRDRKSGLLCRVSAGNDMACLTT 480
Query: 143 KFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201
L + +I+ F +VL + WAK I++ G SY +L+V+F Q P +LP
Sbjct: 481 DLLTALGKIEPVFIPLVLAFRYWAKLCYIDSQTDGGIPSYCFALMVMFFLQQRKPPLLP 539
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1
Length = 1495
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 15/182 (8%)
Query: 35 LREVVESV--ESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSL-- 90
+R+ +ES + G + FGS + + DLD+ C++ G + + L
Sbjct: 1025 IRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLDV--------CMTINGLETAEGLDC 1076
Query: 91 ---LGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFW 147
+ +L R LR+ G R + + A+VPI+KF + + DIS+ N ++ L
Sbjct: 1077 VRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDISLYNTLALHNTRLLSA 1136
Query: 148 ISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIY 207
S ID R + + +K + K DI + G+ +SY+ +L+VL+ Q P ++P L++IY
Sbjct: 1137 YSAIDPRVKYLCYTMKVFTKMCDIGDASRGSLSSYAYTLMVLYFLQQRNPPVIPVLQEIY 1196
Query: 208 PG 209
G
Sbjct: 1197 KG 1198
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 112 HARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDI 171
HARVP++ + C +S N + +K L + +++ + +V+ + WAK I
Sbjct: 390 HARVPVVVCREKQSGLLCKVSAGNENACLTTKHLTALGKLEPKLVPLVIAFRYWAKLCSI 449
Query: 172 NNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201
+ P+ G Y +L+ +F Q +LP
Sbjct: 450 DRPEEGGLPPYVFALMAIFFLQQRKEPLLP 479
>sp|O17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 OS=Caenorhabditis elegans GN=gld-2
PE=1 SV=2
Length = 1113
Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 15/209 (7%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHA 113
GS ++ + D+D+ + ++N +K ++ +L+ + Q + Q + A
Sbjct: 594 GSSLNGFGNNSSDMDLCLMITN----KDLDQKNDAVVVLNLILSTLQYEKFVESQKLILA 649
Query: 114 RVPILK--FETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDI 171
+VPIL+ F +I+ D++ +N + L + S D R R +V +VKEWAK I
Sbjct: 650 KVPILRINFAAPFDDITVDLNANNSVAIRNTHLLCYYSSYDWRVRPLVSVVKEWAKRKGI 709
Query: 172 NNPKTGTFNSYSLSLLVLFHFQTCVPA-ILPPLKDIYPGNLVDDLKGVRANAERQIAEIC 230
N+ +F SYSL L+V+ HF C P +LP L+ YP + + N + E+
Sbjct: 710 NDANKSSFTSYSLVLMVI-HFLQCGPTKVLPNLQQSYPNRFSNKVDVRTLNVTMALEEV- 767
Query: 231 AFNIARFSSDKYRKINRSSLAHLFVSFLE 259
A +I + S+K ++L L + FL+
Sbjct: 768 ADDIDQSLSEK------TTLGELLIGFLD 790
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2
SV=1
Length = 528
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 15/161 (9%)
Query: 54 GSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAH- 112
GS ++ +R D D+ C+ + + Q + +L K Y RL ++
Sbjct: 247 GSSLNGFGTRSSDADL--------CLVLKDEPMNQHTEARHILSLLHKHFYTRLSYIERP 298
Query: 113 ----ARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWI-SQIDGRFRDMVLLVKEWAK 167
A+VPI+KF D++++N+ G I++ FL + I+ R R +VL++K WA
Sbjct: 299 QFIKAKVPIVKFRDKVSGAEFDLNVNNVVG-IRNTFLLRTYAYIENRVRPLVLVIKMWAN 357
Query: 168 AHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYP 208
H +N+ GT +SY+L L+ L + QT I+P L+ YP
Sbjct: 358 YHGLNDASRGTLSSYTLVLMALHYLQTLPEPIIPSLQKKYP 398
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1
Length = 489
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 24/239 (10%)
Query: 21 LREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCIS 80
L + R + +D++++ + G GS ++ SR D D+ + + G
Sbjct: 180 LEKKESCRAALQTDIQKIFPCAKVFLG------GSSLNGFGSRSSDADLCLVIEEGP--- 230
Query: 81 SAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQI 140
+ + L+R L K Y + A+VPI+KF + D++ +N G I
Sbjct: 231 -VNHRKDAVYVLSLVRKLLYKLSYIEKPQLIRAKVPIVKFRDRISGVEFDLNFNNTVG-I 288
Query: 141 KSKFLFWISQ-IDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAI 199
++ FL ++ R R +VL++K+WA H IN+ GT +SY+L L+VL + QT +
Sbjct: 289 RNTFLLRTYAFVEKRVRPLVLVIKKWANHHCINDASRGTLSSYTLVLMVLHYLQTLPEPV 348
Query: 200 LPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFL 258
+P L+ YP D K ++I AF ++R N+SSL LF+ FL
Sbjct: 349 IPCLQRDYPTCF--DPKMDIHLVPSGPSDIPAF-VSR---------NQSSLGDLFLGFL 395
>sp|Q4KMD7|STPAP_DANRE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio
rerio GN=tut1 PE=2 SV=1
Length = 797
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 52 PFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQ-------------SLLGD----- 93
PFGS V+ DLD+ ++L N + K +Q S+L D
Sbjct: 202 PFGSSVNTFGLHSCDLDLFLDLENTKVFQARAKSSEQTGENQSEDCRSEDSILSDIDLST 261
Query: 94 --------LLRALRQK--GGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSK 143
L+ + +K G ++Q ++ AR+P++KF N+ DI+I+N +K
Sbjct: 262 ASPAEILELVAVILRKCVPGVHKVQALSTARLPVVKFSHKELNLQGDITINNRLAVRNTK 321
Query: 144 FLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGT---FNSYSLSLLVLFHFQTCVPAIL 200
FL S ID R R +V ++ WAK + +G N+Y+L+LLV+F Q P +L
Sbjct: 322 FLQLCSGIDSRLRPLVYTIRLWAKQKQLAGNLSGPGPLLNNYALTLLVIFFLQNRDPPVL 381
Query: 201 P 201
P
Sbjct: 382 P 382
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus
GN=TUT1 PE=2 SV=1
Length = 871
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 65 GDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH 124
GD ++EL+ A L+G +LR G R+Q V AR P++KF
Sbjct: 318 GDQGKAVELAEALKGEKAEGGAMLELVGSILRGCVP--GVYRVQTVPSARCPVVKFCHRP 375
Query: 125 QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSL 184
+ DIS+ N S+FL S++DGR R +V ++ WA+ ++ N+Y+L
Sbjct: 376 SGLHGDISLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSG-SGPLLNNYAL 434
Query: 185 SLLVLFHFQTCVPAILP 201
+LLV++ QT P +LP
Sbjct: 435 TLLVIYFLQTRDPPVLP 451
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 21/169 (12%)
Query: 53 FGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAH 112
FGS S L + D+D+ + + + + + + L+ + +F+
Sbjct: 88 FGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEGFEG----------KFLQR 137
Query: 113 ARVPILKFETIHQN-----ISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAK 167
AR+PI+K + +N CDI +N + L +++D R + MVLLVK WAK
Sbjct: 138 ARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAK 197
Query: 168 AHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLK 216
IN+P GT +SY L+VL++ + I PP ++P L+ LK
Sbjct: 198 RKQINSPYFGTLSSYGYVLMVLYYL---IHVIKPP---VFPNLLLSPLK 240
>sp|Q9NVV4|PAPD1_HUMAN Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1
SV=1
Length = 582
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 50 VEPFGSFVSNLFSRWG-DLDISIELSNGSCISS-----------------AGKKVKQSLL 91
V PFGS V N F + G DLD+ ++L +S+ + + Q +L
Sbjct: 227 VRPFGSSV-NTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKIL 285
Query: 92 GDLLRALRQKG-GYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQ 150
L L G G +Q + +AR P+++F CD++ +N S+ L+
Sbjct: 286 SVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCDLTTNNRIALTSSELLYIYGA 345
Query: 151 IDGRFRDMVLLVKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDI 206
+D R R +V V+ WA+AH + + G + ++SL+++V+F Q P ILP L +
Sbjct: 346 LDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSL 402
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 12/154 (7%)
Query: 53 FGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAH 112
FGS+ + L ++ DLD+ I S+ + +VK + + + +G
Sbjct: 927 FGSYRTGLMTKNSDLDLVI-YSSKEALLPYYDRVKSIIKNEFSNVMPIRG---------- 975
Query: 113 ARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172
AR+PI+KF T NI CD+S DNL S + S ID R + +++LVK WA I+
Sbjct: 976 ARIPIIKF-TGQYNIHCDLSFDNLLPIHNSDLILNYSLIDERVKTLLMLVKYWASNRLID 1034
Query: 173 NPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDI 206
+SY+ ++V+F+ Q ILP L+ +
Sbjct: 1035 KTHHAFPSSYTWCIMVIFYLQQIPEPILPNLQKL 1068
>sp|Q9H6E5|STPAP_HUMAN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Homo
sapiens GN=TUT1 PE=1 SV=2
Length = 874
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 65 GDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH 124
GDL + EL+ A L+G +LR G R+Q V AR P++KF
Sbjct: 318 GDLGKASELAETPKEEKAEGAAMLELVGSILRGCVP--GVYRVQTVPSARRPVVKFCHRP 375
Query: 125 QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSL 184
+ D+S+ N S+FL S++DGR R +V ++ WA+ ++ ++Y+L
Sbjct: 376 SGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSG-SGPLLSNYAL 434
Query: 185 SLLVLFHFQTCVPAILP 201
+LLV++ QT P +LP
Sbjct: 435 TLLVIYFLQTRDPPVLP 451
>sp|D2HS90|STPAP_AILME Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Ailuropoda
melanoleuca GN=TUT1 PE=3 SV=1
Length = 869
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 65 GDLDISIELSNGSCISSAGKKVKQ----SLLGDLLRALRQKGGYRRLQFVAHARVPILKF 120
GDL ++EL+ + +G+K + L+G +LR G R+Q V AR P++KF
Sbjct: 317 GDLGKALELAE----ALSGEKTEGVAMLELVGSILRGCVP--GVYRVQTVPSARRPVVKF 370
Query: 121 ETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFN 180
+ D+S+ N S+FL S++DGR R +V ++ WA+ ++ +
Sbjct: 371 CHRPSGLHGDVSLSNRLALHNSRFLSLCSELDGRVRPLVYTLRCWAQGRGLSG-SGPLLS 429
Query: 181 SYSLSLLVLFHFQTCVPAILP 201
+Y+L+LLV++ QT P +LP
Sbjct: 430 NYALTLLVIYFLQTRDPPVLP 450
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus
musculus GN=Tut1 PE=1 SV=1
Length = 869
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 90 LLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWIS 149
L+G +LR G R+Q V AR P++KF + D+S+ N S+FL S
Sbjct: 346 LVGSILRGCVP--GVYRVQTVPSARRPVVKFCHRPSGLHGDVSLSNRLALYNSRFLNLCS 403
Query: 150 QIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201
++DGR R +V ++ WA+ + ++ N+Y+L+LLV++ QT P +LP
Sbjct: 404 EMDGRVRPLVYTLRCWAQHNGLSG-GGPLLNNYALTLLVIYFLQTRDPPVLP 454
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 12/190 (6%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+KD + ++P + + + R + I LR V+ + S A + FGSF ++L+ D+D
Sbjct: 180 IKDFVHYISPSKNEIKCRNRTIDKLRRAVKELWS--DADLHVFGSFATDLYLPGSDIDCV 237
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCD 130
+ N K ++ + +L R L+ KG R++ + RVPI+KF + D
Sbjct: 238 VNSRNRD-------KEDRNYIYELARHLKNKGLAIRMEVIVKTRVPIIKFIEPQSQLHID 290
Query: 131 ISIDNLCGQIKSKFLF-WISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVL 189
+S + G +K + W+ G R++VL++K++ + +NN TG +++ LV
Sbjct: 291 VSFERTNGLEAAKLIREWLRDSPG-LRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLV- 348
Query: 190 FHFQTCVPAI 199
+ F P I
Sbjct: 349 YSFLNMHPRI 358
>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid13 PE=1 SV=1
Length = 578
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 26 ETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKK 85
E R + L ++++ + FGS S L S D+D+ I C + +
Sbjct: 70 ERRYAFVQKLEQILKKEFPYKNIKTSLFGSTQSLLASNASDIDLCIITDPPQCAPTTCE- 128
Query: 86 VKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFL 145
+ A + G +++ ++ A+VPI+K +SCD +I+ + ++ +
Sbjct: 129 ---------VSAAFARNGLKKVVCISTAKVPIVKVWDSELQLSCDCNINKTISTLNTRLM 179
Query: 146 FWISQIDGRFRDMVLLVKEWAKAHDINN-PKTGTFNSYSLSLLVLFHFQTCVPAILPPLK 204
D R R +++++K WAK +N+ + GT SY++S +V+ Q P ILP L+
Sbjct: 180 RSYVLCDPRVRPLIVMIKYWAKRRCLNDAAEGGTLTSYTISCMVINFLQKRDPPILPSLQ 239
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus
norvegicus GN=Tut1 PE=2 SV=1
Length = 866
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 90 LLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWIS 149
L+G +LR G R+Q V AR P++KF + DIS+ N S+FL S
Sbjct: 344 LVGSILRGCVP--GVYRVQTVPSARRPVVKFCHRPSGLHGDISLSNRLALYNSRFLNLCS 401
Query: 150 QIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201
++D R R +V ++ WA+ + ++ N+Y+L+LLV++ QT P +LP
Sbjct: 402 EMDSRVRPLVYTLRCWAQHNGLSG-GGPLLNNYALTLLVIYFLQTRDPPVLP 452
>sp|Q9D0D3|PAPD1_MOUSE Poly(A) RNA polymerase, mitochondrial OS=Mus musculus GN=Mtpap PE=2
SV=1
Length = 585
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 32/205 (15%)
Query: 50 VEPFGSFVSNLFSRWG-DLDISIELSNGSCIS-----------------SAGKKVKQSLL 91
+ PFGS V N F + G DLD+ ++L + + + Q +L
Sbjct: 230 IRPFGSSV-NTFGKLGCDLDMFLDLDETGKLDVHKNTGNFFMEFQVKNVPSERIATQKIL 288
Query: 92 GDLLRALRQKG-GYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQ 150
+ L G G +Q + +AR P+++F CD++ +N S+ L+
Sbjct: 289 SVIGECLDNFGPGCVGVQKILNARCPLVRFSHQGSGFQCDLTANNSIALKSSELLYIYGS 348
Query: 151 IDGRFRDMVLLVKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPG 209
+D R R +V V+ WA+AH + + G + ++SL+++V+F Q P ILP L
Sbjct: 349 LDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTVMVIFFLQRRSPPILPTL------ 402
Query: 210 NLVDDLKGVRANAERQIAE--ICAF 232
D LK + +R I E C F
Sbjct: 403 ---DSLKSIADAEDRCILEGNNCTF 424
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 14/199 (7%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+KD + ++P + + + R + +R+ V+ A + FGS+ ++L+ D+D
Sbjct: 199 IKDFVSYISPNKTEIQLRNDALKRIRDAVQDF--WPDANLHCFGSYATDLYLPGSDIDCV 256
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCD 130
+ S +G K ++ L L L++ G ++ +A ARVPI+KF I D
Sbjct: 257 VN-------SKSGDKDNKNALYSLASYLKRNGLATQVSVIAKARVPIIKFVEPASQIHID 309
Query: 131 ISIDNLCGQIKSKFL-FWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVL 189
+S + G +K + W+ G R++VL+VK++ A +N+ G +S+ + +
Sbjct: 310 LSFERTNGVEAAKIIRGWLHDTPG-LRELVLIVKQFLHARRLNDVHIGGLGGFSI-ICLA 367
Query: 190 FHFQTCVPAILPPLKDIYP 208
+ F P I+ +DI P
Sbjct: 368 YSFLKLHPRII--CRDIEP 384
>sp|A9JTS5|STPAP_XENTR Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus
tropicalis GN=tut1 PE=2 SV=1
Length = 843
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 103 GYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLV 162
G +Q V AR P++ F+ + D++++N S FL S +D R +V V
Sbjct: 316 GVHGVQSVPTARRPVIHFQHKTSGLRGDVTLNNRLALRNSSFLRLCSDLDARVPQLVYTV 375
Query: 163 KEWAKAHDI-NNPKTGT--FNSYSLSLLVLFHFQTCVPAILPPL 203
+ WA+ + + NP G N+Y+L+LLV F QT P +LP L
Sbjct: 376 RYWARVNQLAGNPFGGGPLLNNYALTLLVFFFLQTRNPPVLPTL 419
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4
PE=1 SV=1
Length = 845
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 7/181 (3%)
Query: 13 DILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIE 72
D+ + P + R KV +R+ V + + FGS +NLF D+D+ +E
Sbjct: 86 DMYHWIKPNEIESRLRTKVFEKVRDSVLRRWKQKTIKISMFGSLRTNLFLPTSDIDVLVE 145
Query: 73 LSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDIS 132
+ + + G L + R L + A VPI+K +S DIS
Sbjct: 146 CDD--WVGTPG-----DWLAETARGLEADNIAESVMVYGGAFVPIVKMVDRDTRLSIDIS 198
Query: 133 IDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHF 192
+ + G + ++ + + +VLL+K++ ++N TG +SY L LL++ F
Sbjct: 199 FNTVQGVRAASYIAKVKEEFPLIEPLVLLLKQFLHYRNLNQTFTGGLSSYGLVLLLVNFF 258
Query: 193 Q 193
Q
Sbjct: 259 Q 259
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+ D ++P E+ + RM+V+S + V++ E A V+ FGSF + L+ D+D+
Sbjct: 138 ISDFYEYMSPRPEEEKMRMEVVSRIESVIK--ELWPSADVQIFGSFKTGLYLPTSDIDLV 195
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQK--GGYRRLQFVAHARVPILKFETIHQNIS 128
+ K + L L ALR+ ++ + A VPI+K +
Sbjct: 196 V-----------FGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVK 244
Query: 129 CDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLV 188
DIS + G + + ++ +VL++K++ D+N TG SYSL L+
Sbjct: 245 VDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMA 304
Query: 189 LFHFQ------TCVP 197
+ Q C+P
Sbjct: 305 VSFLQLHPREDACIP 319
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 11 LKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDIS 70
+ D ++P E+ + RM+V++ + V++ E A V+ FGSF + L+ D+D+
Sbjct: 124 ISDFYEYMSPRPEEEKMRMEVVNRIESVIK--ELWPSADVQIFGSFKTGLYLPTSDIDLV 181
Query: 71 IELSNGSCISSAGKKVKQSLLGDLLRALRQK--GGYRRLQFVAHARVPILKFETIHQNIS 128
+ K + L L ALR+ ++ + A VPI+K +
Sbjct: 182 V-----------FGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVK 230
Query: 129 CDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLV 188
DIS + G + + ++ +VL++K++ D+N TG SYSL L+
Sbjct: 231 VDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMA 290
Query: 189 LFHFQ------TCVP 197
+ Q C+P
Sbjct: 291 VSFLQLHPREDACIP 305
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 89/204 (43%), Gaps = 45/204 (22%)
Query: 15 LGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELS 74
LG LN L ++W ++ IS+L+ + +SV G + FGS+ + ++ D+D
Sbjct: 62 LGKLNNLVKEW---IREISELKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID------ 112
Query: 75 NGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILK-------------- 119
C+ A + V +S L L+Q+ + L+ V A VP++K
Sbjct: 113 -ALCV--APRHVDRSDLFSSFYEKLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFAR 169
Query: 120 --FETIHQ-------------NISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKE 164
+TI + +I C S+ N C ++ + L + ID FR + +K
Sbjct: 170 LALQTIPEDLDLRDDSLLKNLDIRCIRSL-NGC-RVTDEILHLVPNIDS-FRLTLRAIKL 226
Query: 165 WAKAHDINNPKTGTFNSYSLSLLV 188
WAK H+I + G S ++LV
Sbjct: 227 WAKRHNIYSNILGFLGGVSWAMLV 250
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 15/178 (8%)
Query: 18 LNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGS 77
++P E+ R +V+ + VV+ + A V+ FGSF + L+ D+D+ +
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPT--ADVQIFGSFSTGLYLPTSDIDLVV------ 52
Query: 78 CISSAGKKVKQSLLGDLLRALRQKGGYR--RLQFVAHARVPILKFETIHQNISCDISIDN 135
K ++ L L +ALR+ ++ + A VPI+K + DIS +
Sbjct: 53 -----FGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNM 107
Query: 136 LCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQ 193
G ++F+ + ++L++K++ D+N TG +SYSL L+ + Q
Sbjct: 108 ETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 15/178 (8%)
Query: 18 LNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGS 77
++P E+ R +V+ + VV+ + A V+ FGSF + L+ D+D+ +
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPT--ADVQIFGSFSTGLYLPTSDIDLVV------ 52
Query: 78 CISSAGKKVKQSLLGDLLRALRQKGGYR--RLQFVAHARVPILKFETIHQNISCDISIDN 135
K ++ L L +ALR+ ++ + A VPI+K + DIS +
Sbjct: 53 -----FGKWERPPLQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNM 107
Query: 136 LCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQ 193
G ++F+ + ++L++K++ D+N TG +SYSL L+ + Q
Sbjct: 108 ETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQ 165
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 14 ILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIEL 73
+LG LN L ++W + IS+ + + SV + G + FGS+ + ++ D+D
Sbjct: 63 VLGKLNNLVKEW---ISDISESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADID----- 114
Query: 74 SNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILKFE 121
C+ A + V++S L+ + G R L+ V A VP++KFE
Sbjct: 115 --ALCV--APRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFE 159
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 14 ILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIEL 73
+LG LN L ++W + +S+ + + SV + G + FGS+ + ++ D+D
Sbjct: 63 VLGKLNNLVKEW---ISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADID----- 114
Query: 74 SNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILKFE 121
C+ A + V++S L+ + G R L+ V A VP++KFE
Sbjct: 115 --ALCV--APRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFE 159
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 48/224 (21%)
Query: 2 GSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLF 61
G + E + ILG LN L ++W ++ IS+L+ + +SV G + FG + +
Sbjct: 34 GVFEEEEQLQHRILGKLNNLVKEW---IREISELKHLPQSVIENVGGKIFTFGPYRLGVH 90
Query: 62 SRWGDLDISIELSNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILKF 120
++ D+D C+ A + V +S L+Q+ + L+ V A VP++K
Sbjct: 91 TKGADID-------ALCV--APRHVDRSDFFSSFYDKLKQQEEVKDLRSVEEAFVPVIKL 141
Query: 121 ----------------ETIHQ-------------NISCDISIDNLCGQIKSKFLFWISQI 151
+TI + +I C S+ N C ++ + L + I
Sbjct: 142 CFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSL-NGC-RVTDEILHLVPNI 199
Query: 152 DGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195
D FR + +K WAK H+I + G S ++LV +TC
Sbjct: 200 DS-FRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVA---RTC 239
>sp|Q8ZLT3|PNP_SALTY Polyribonucleotide nucleotidyltransferase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=pnp PE=1 SV=1
Length = 711
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|B5BGJ1|PNP_SALPK Polyribonucleotide nucleotidyltransferase OS=Salmonella paratyphi A
(strain AKU_12601) GN=pnp PE=3 SV=1
Length = 711
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|C0PZ50|PNP_SALPC Polyribonucleotide nucleotidyltransferase OS=Salmonella paratyphi C
(strain RKS4594) GN=pnp PE=3 SV=2
Length = 711
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|A9N728|PNP_SALPB Polyribonucleotide nucleotidyltransferase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=pnp PE=3 SV=2
Length = 711
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|Q5PL97|PNP_SALPA Polyribonucleotide nucleotidyltransferase OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=pnp PE=3 SV=1
Length = 711
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|B5REN2|PNP_SALG2 Polyribonucleotide nucleotidyltransferase OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=pnp PE=3 SV=1
Length = 711
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|B5QZV4|PNP_SALEP Polyribonucleotide nucleotidyltransferase OS=Salmonella enteritidis
PT4 (strain P125109) GN=pnp PE=3 SV=1
Length = 711
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|Q57JI3|PNP_SALCH Polyribonucleotide nucleotidyltransferase OS=Salmonella
choleraesuis (strain SC-B67) GN=pnp PE=3 SV=2
Length = 711
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|Q8Z3I0|PNP_SALTI Polyribonucleotide nucleotidyltransferase OS=Salmonella typhi
GN=pnp PE=3 SV=1
Length = 711
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 24/122 (19%)
Query: 112 HARVPILKFETIHQNISCDISID-NLCGQI---------KSKFLFWISQIDGRFRDMVLL 161
+A+V ++K ETI Q I+ D ++D N G+I +S+ L +IDGR +DM+
Sbjct: 267 YAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMI-- 324
Query: 162 VKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRA 220
+ D+ +TG ++ +L Q V A L +D ++D+L G R
Sbjct: 325 -----RGLDV---RTGVLPRTHGSALFTRGETQALVTATLGTARD---AQVLDELMGERT 373
Query: 221 NA 222
++
Sbjct: 374 DS 375
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 48/212 (22%)
Query: 14 ILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIEL 73
ILG LN L ++W ++ IS+ + + +SV G + FGS+ + ++ D+D
Sbjct: 64 ILGKLNNLVKEW---IREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID----- 115
Query: 74 SNGSCISSAGKKVKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILKF------------ 120
C+ A + V +S L+ + + L+ V A VP++K
Sbjct: 116 --ALCV--APRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFA 171
Query: 121 ----ETIHQ-------------NISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVK 163
+TI + +I C S+ N C ++ + L + ID FR + +K
Sbjct: 172 RLALQTIPEDLDLRDDSLLKNLDIRCIRSL-NGC-RVTDEILHLVPNIDN-FRLTLRAIK 228
Query: 164 EWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195
WAK H+I + G S ++LV +TC
Sbjct: 229 LWAKRHNIYSNILGFLGGVSWAMLVA---RTC 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,772,555
Number of Sequences: 539616
Number of extensions: 3946502
Number of successful extensions: 12549
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 12466
Number of HSP's gapped (non-prelim): 72
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)