Query 022734
Match_columns 293
No_of_seqs 188 out of 1230
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:45:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5260 TRF4 DNA polymerase si 100.0 5.4E-44 1.2E-48 333.2 19.6 233 4-282 54-286 (482)
2 KOG1906 DNA polymerase sigma [ 100.0 7.9E-36 1.7E-40 284.5 20.4 184 4-195 60-243 (514)
3 KOG2277 S-M checkpoint control 100.0 2.3E-30 5.1E-35 257.6 18.5 264 6-284 113-380 (596)
4 PTZ00418 Poly(A) polymerase; P 99.9 3E-25 6.4E-30 214.7 22.8 209 6-280 69-323 (593)
5 cd05402 NT_PAP_TUTase Nucleoti 99.9 4.6E-26 1E-30 179.8 13.9 114 27-149 1-114 (114)
6 KOG2245 Poly(A) polymerase and 99.9 2.4E-21 5.2E-26 181.3 19.8 181 5-195 31-255 (562)
7 COG5186 PAP1 Poly(A) polymeras 99.7 2.1E-16 4.6E-21 143.2 15.3 181 5-195 23-247 (552)
8 TIGR03671 cca_archaeal CCA-add 99.6 2.6E-14 5.6E-19 134.2 18.6 170 11-191 2-187 (408)
9 PRK13300 tRNA CCA-pyrophosphor 99.6 6.2E-14 1.3E-18 133.5 19.6 171 11-191 3-189 (447)
10 COG1746 CCA1 tRNA nucleotidylt 99.4 9.8E-12 2.1E-16 115.7 16.4 174 6-191 2-191 (443)
11 PF04928 PAP_central: Poly(A) 99.3 4E-12 8.8E-17 113.3 8.1 158 6-284 21-183 (254)
12 cd05400 NT_2-5OAS_ClassI-CCAas 98.3 1.2E-05 2.6E-10 65.5 11.2 96 29-131 10-106 (143)
13 cd05397 NT_Pol-beta-like Nucle 98.2 2.5E-06 5.5E-11 56.8 5.1 41 30-72 2-42 (49)
14 PF03828 PAP_assoc: Cid1 famil 98.2 6.4E-07 1.4E-11 62.1 1.4 34 249-288 1-34 (60)
15 PF01909 NTP_transf_2: Nucleot 98.2 1.4E-06 3E-11 65.4 2.9 43 32-76 1-43 (93)
16 cd05403 NT_KNTase_like Nucleot 97.8 3.3E-05 7.2E-10 57.5 4.6 46 31-77 3-48 (93)
17 COG1669 Predicted nucleotidylt 97.3 0.0018 3.8E-08 49.1 8.0 46 29-76 8-53 (97)
18 smart00572 DZF domain in DSRM 97.2 0.0044 9.5E-08 54.9 11.0 129 49-190 4-161 (246)
19 PF03813 Nrap: Nrap protein; 97.2 0.0076 1.7E-07 63.9 14.2 140 55-194 1-206 (972)
20 COG1708 Predicted nucleotidylt 96.9 0.0057 1.2E-07 48.0 8.3 30 45-74 24-53 (128)
21 PRK13746 aminoglycoside resist 96.7 0.006 1.3E-07 54.9 7.8 41 34-76 15-57 (262)
22 PF10421 OAS1_C: 2'-5'-oligoad 96.6 0.0031 6.8E-08 53.6 4.6 58 138-195 26-85 (190)
23 PF14091 DUF4269: Domain of un 96.2 0.15 3.3E-06 41.9 12.0 114 47-172 15-142 (152)
24 PF09249 tRNA_NucTransf2: tRNA 95.4 0.022 4.8E-07 44.3 4.1 33 159-191 3-37 (114)
25 PF07528 DZF: DZF domain; Int 94.6 0.3 6.6E-06 43.6 9.7 129 53-194 2-165 (248)
26 PRK02098 phosphoribosyl-dephos 94.6 0.17 3.7E-06 44.4 8.0 41 31-75 108-154 (221)
27 TIGR03135 malonate_mdcG holo-A 94.5 0.099 2.2E-06 45.3 6.0 40 32-75 97-142 (202)
28 PF14792 DNA_pol_B_palm: DNA p 94.0 0.12 2.6E-06 40.4 5.2 70 30-106 9-78 (112)
29 KOG3793 Transcription factor N 93.2 4.8 0.0001 36.2 14.1 181 2-195 36-243 (362)
30 cd00141 NT_POLXc Nucleotidyltr 93.2 1.1 2.5E-05 41.2 10.9 122 30-172 145-270 (307)
31 PF03813 Nrap: Nrap protein; 90.4 21 0.00046 38.3 18.0 170 21-195 497-721 (972)
32 COG2413 Predicted nucleotidylt 87.7 0.96 2.1E-05 38.9 4.6 45 26-75 21-65 (228)
33 PF10620 MdcG: Phosphoribosyl- 87.3 2.8 6E-05 36.6 7.4 41 31-75 104-150 (213)
34 KOG2054 Nucleolar RNA-associat 86.4 7.6 0.00017 41.1 11.0 149 46-195 146-349 (1121)
35 PF10127 Nuc-transf: Predicted 86.4 0.74 1.6E-05 40.9 3.5 47 28-75 2-48 (247)
36 PRK01293 phosphoribosyl-dephos 85.3 3.6 7.7E-05 35.8 7.0 40 32-75 98-143 (207)
37 KOG2054 Nucleolar RNA-associat 85.3 29 0.00063 36.9 14.5 165 27-202 645-864 (1121)
38 cd05401 NT_GlnE_GlnD_like Nucl 84.1 15 0.00031 30.5 10.2 30 47-76 55-84 (172)
39 KOG2534 DNA polymerase IV (fam 83.4 6.9 0.00015 36.1 8.2 60 31-100 157-216 (353)
40 PHA02603 nrdC.11 hypothetical 78.0 1.3 2.8E-05 41.2 1.7 22 49-70 5-26 (330)
41 COG3541 Predicted nucleotidylt 77.3 1.3 2.7E-05 39.3 1.4 21 53-73 16-36 (248)
42 PF09970 DUF2204: Nucleotidyl 77.0 13 0.00028 31.5 7.5 80 46-141 15-99 (181)
43 PRK00227 glnD PII uridylyl-tra 76.2 6 0.00013 40.7 6.1 49 26-75 6-55 (693)
44 PF03445 DUF294: Putative nucl 75.8 40 0.00086 27.1 10.2 29 47-75 49-77 (138)
45 PHA02996 poly(A) polymerase la 75.4 11 0.00024 35.8 7.0 107 6-130 124-240 (467)
46 PRK08609 hypothetical protein; 75.0 24 0.00051 35.6 9.9 41 32-75 162-202 (570)
47 PF03296 Pox_polyA_pol: Poxvir 72.9 29 0.00063 28.1 7.9 98 15-130 16-123 (149)
48 COG1796 POL4 DNA polymerase IV 67.2 1.1E+02 0.0023 28.5 12.1 122 30-177 165-286 (326)
49 COG1665 Predicted nucleotidylt 66.2 12 0.00026 33.8 5.0 29 45-73 119-147 (315)
50 PRK05007 PII uridylyl-transfer 65.4 51 0.0011 35.1 10.3 30 46-75 79-108 (884)
51 COG2844 GlnD UTP:GlnB (protein 64.2 44 0.00094 35.0 9.0 52 25-76 41-95 (867)
52 PRK00275 glnD PII uridylyl-tra 61.5 59 0.0013 34.7 9.9 30 47-76 78-107 (895)
53 PRK04374 PII uridylyl-transfer 60.0 65 0.0014 34.2 9.9 30 47-76 72-101 (869)
54 PRK01759 glnD PII uridylyl-tra 57.5 87 0.0019 33.2 10.3 30 47-76 56-85 (854)
55 TIGR01693 UTase_glnD [Protein- 54.9 96 0.0021 32.8 10.2 31 46-76 42-72 (850)
56 PRK03059 PII uridylyl-transfer 53.8 91 0.002 33.1 9.8 29 47-75 61-89 (856)
57 smart00483 POLXc DNA polymeras 49.9 44 0.00096 31.2 6.1 44 30-76 149-192 (334)
58 PF12633 Adenyl_cycl_N: Adenyl 45.1 54 0.0012 28.4 5.4 27 49-75 99-125 (204)
59 PF11774 Lsr2: Lsr2 ; InterPr 44.2 43 0.00093 26.0 4.2 65 116-182 20-102 (110)
60 cd05398 NT_ClassII-CCAase Nucl 43.6 1.5E+02 0.0032 23.8 7.5 69 47-135 16-86 (139)
61 PF03710 GlnE: Glutamate-ammon 43.4 61 0.0013 28.8 5.7 31 47-77 127-157 (247)
62 PRK03381 PII uridylyl-transfer 40.8 86 0.0019 32.8 7.1 29 47-75 57-85 (774)
63 PF04229 GrpB: GrpB protein; 39.5 2E+02 0.0044 23.8 8.0 105 47-167 32-142 (167)
64 KOG0584 Serine/threonine prote 32.3 51 0.0011 33.3 3.6 65 117-201 103-168 (632)
65 PRK05092 PII uridylyl-transfer 30.2 95 0.002 33.3 5.5 30 47-76 105-134 (931)
66 PF07796 DUF1638: Protein of u 29.3 95 0.0021 25.6 4.4 39 34-72 17-58 (166)
67 PF14907 NTP_transf_5: Unchara 24.8 4.3E+02 0.0093 22.7 8.0 38 34-72 59-102 (249)
68 PRK14109 bifunctional glutamin 24.2 1.5E+02 0.0032 32.1 5.7 28 48-75 724-751 (1007)
69 cd02068 radical_SAM_B12_BD B12 23.3 1.9E+02 0.0041 22.3 4.9 39 34-74 57-98 (127)
70 PF04439 Adenyl_transf: Strept 20.8 1.3E+02 0.0028 27.4 3.9 44 29-75 5-51 (282)
No 1
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.4e-44 Score=333.16 Aligned_cols=233 Identities=25% Similarity=0.346 Sum_probs=199.0
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccc
Q 022734 4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAG 83 (293)
Q Consensus 4 ~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~ 83 (293)
.+.|+.+|.+|++++.|+.+|.++|..+++.|+.++++. ||++.+.+|||+.+|+++|.||+|+||..++...
T Consensus 54 ~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~--~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~----- 126 (482)
T COG5260 54 SDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKE--FPDADLKVFGSTETGLALPKSDIDLCIISDPRGY----- 126 (482)
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHh--CCccceeEecccccccccCcccccEEEecCCccc-----
Confidence 458999999999999999999999999999999999997 7999999999999999999999999999865322
Q ss_pred hhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHH
Q 022734 84 KKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVK 163 (293)
Q Consensus 84 k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK 163 (293)
+..+. .+ .++..+.....+.++.++.+|||||||++++.+|+.|||++||..|+.+|++++.|...+|++|||+++||
T Consensus 127 ~et~~-~~-~l~~~l~~~~~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~akl~~~~~~~~P~lrpLvliIK 204 (482)
T COG5260 127 KETRN-AG-SLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLIRSYLKEDPRLRPLVLIIK 204 (482)
T ss_pred ccccc-HH-HHHHHHHHhccCeeeEEEEecccceEEEecCccceEEEeecCchhHHHHHHHHHHHHhcCcccchHHHHHH
Confidence 12222 23 45555656678889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCccccccchhhHHHHHHhhhhcccccCCccC
Q 022734 164 EWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR 243 (293)
Q Consensus 164 ~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 243 (293)
||+++|.|++++.|||+||++++||+.|||.++| .|-+++. +.+....
T Consensus 205 hwl~~R~ln~~~~GtL~sy~i~cmV~sfLq~~~~--~~~~~~~------------------------------~~~~l~~ 252 (482)
T COG5260 205 HWLKRRALNDVATGTLSSYTISCMVLSFLQMHPP--FLFFDNG------------------------------LLSPLKY 252 (482)
T ss_pred HHHHHHhhcccccCcchhhhhHHHHHHHHHhCCc--ccccccc------------------------------ccchhhc
Confidence 9999999999999999999999999999999944 1111110 0011234
Q ss_pred CCCcchHHHHHHHHHHHhccCcchhhhhhcccccccccc
Q 022734 244 KINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDE 282 (293)
Q Consensus 244 ~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~ 282 (293)
..|..++|-||.+||+||+.. |+|..-++-+..|
T Consensus 253 ~~~~~~lgvLf~dFf~~yG~~-----f~Y~~~~~si~~g 286 (482)
T COG5260 253 NKNIDNLGVLFDDFFELYGKS-----FNYSLVVLSINSG 286 (482)
T ss_pred cccccccchHHHHHHHHhccc-----cChhheEEEecCC
Confidence 567789999999999999997 8898886666555
No 2
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]
Probab=100.00 E-value=7.9e-36 Score=284.55 Aligned_cols=184 Identities=28% Similarity=0.371 Sum_probs=164.0
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccc
Q 022734 4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAG 83 (293)
Q Consensus 4 ~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~ 83 (293)
..+|+.||.+|++++.||++|.+.|..+++.+++.+++. ||++.+++|||+.|||++|+||||+++..+....
T Consensus 60 s~~l~~eI~~fv~~l~pt~~e~~~R~~~~~~i~~~v~~~--~~~a~v~~FGS~~tglyLP~sDIDl~v~~~~~~~----- 132 (514)
T KOG1906|consen 60 SERLRNEILDFVQYLIPTPEEIEVRSELVEKIRDVVKQK--WPDASVYVFGSVPTGLYLPDSDIDLVVLSKFLND----- 132 (514)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh--cccceeEEeeeeeccccccccceEEEEecccccC-----
Confidence 467999999999999999999999999999999999986 7999999999999999999999999999874321
Q ss_pred hhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHH
Q 022734 84 KKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVK 163 (293)
Q Consensus 84 k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK 163 (293)
+ +.......++..++.......|.+|.+||||||||++..++|.+|||||+.+|++.+++++.+.+.+|.+++|++++|
T Consensus 133 ~-e~~~~~~~l~~~~e~~~~~~~v~~v~karvpiik~~d~~s~i~vDISFn~~~G~~aa~~i~~~~~~~p~~~~lvlvlk 211 (514)
T KOG1906|consen 133 K-EDRAVKLELALELEEDNSAFHVKVVQKARVPIIKFKDPVSNIHVDISFNQTNGVKAAKFIKDFLRDHPFLRSLVLVLK 211 (514)
T ss_pred c-hhhHHHHHHHHhhhhccccceEEEeeeeeeeeEEeecCccceEEEeeecccCchhHHHHHHHHHhcCccchhHHHHHH
Confidence 1 222233333344433455667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 022734 164 EWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 164 ~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
+|+.+++++++++||++||++++|+++|||.+
T Consensus 212 ~fl~~r~ln~v~tGgisSyal~~Lv~~fl~l~ 243 (514)
T KOG1906|consen 212 QFLYERRLNGVHTGGISSYALELLVLSFLQLH 243 (514)
T ss_pred HHHHhhcccccccccchHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999998
No 3
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.3e-30 Score=257.64 Aligned_cols=264 Identities=30% Similarity=0.423 Sum_probs=209.9
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchh
Q 022734 6 VLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKK 85 (293)
Q Consensus 6 ~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~ 85 (293)
.|+..+...++...+...+...|......++..+....+.....+..|||..+|++...+|+|+++...... .+..+.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~gs~~~~~~~~~~d~d~~~~~~~~~--~~~~~~ 190 (596)
T KOG2277|consen 113 FLDPQLNELLESFKLPHSDVKTRKLILDKLRALASLLFPDSILSLYLFGSSDLGLGERSSDLDLCVDFTSSF--LSFEKI 190 (596)
T ss_pred hhchhhhhhhhccCCCccccchHHHHHHHHHHHHHHhcCCCcceeeccCcccccccccccCcceeecccccc--cccchh
Confidence 367788888888999999999999999999999887632223334599999999999999999777665431 112233
Q ss_pred hHHHHHHHHHHHHHhcCC--cceEEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHH
Q 022734 86 VKQSLLGDLLRALRQKGG--YRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVK 163 (293)
Q Consensus 86 ~~~~~l~~l~~~L~~~~~--~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK 163 (293)
....++..+++.+..... +..++.+..|||||||+.|..++++||++++|..|+.||.+++.|...|+|+++|++++|
T Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~A~vPiik~~~~~~~~~~d~s~~n~~~~~nS~ll~~~~~~d~r~~~L~~~vk 270 (596)
T KOG2277|consen 191 KGLEILKLLAKCLASLLEEGVREVQQILSARVPIIKFNDSGSGLECDLSVNNSDAILNSQLLRNYSEIDPRVRPLVLLVK 270 (596)
T ss_pred hhHHHHHHHHHHHHhccccccceeeeeeecCCCEEEecCCCCCCceeeeeccchhhhhhHHHHHhHhcCCCcchHhHHHH
Confidence 445667777777765432 678888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCC-hHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCccccccchhhHHHHHHhhhhcc-cccCCc
Q 022734 164 EWAKAHDINNPKTGTFN-SYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIA-RFSSDK 241 (293)
Q Consensus 164 ~wak~~~l~~~~~G~ls-Sy~l~lmvi~fLQ~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~-~~~~~~ 241 (293)
+||+.++++++..|+++ +|++++||+||||+.+|+|+|+++++++.....+...+ +... ...+. .+....
T Consensus 271 ~wa~~~~~~d~~~g~~~s~ysl~lmvi~fLq~~~~~ilp~l~~l~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~ 342 (596)
T KOG2277|consen 271 HWAKEKGLNDAKPGGLNSSYSLTLMVIHFLQTLSPPILPPLSKLLPESDSNDKPVV----KKKV----LCSFLRVFQRNP 342 (596)
T ss_pred HHHHhccCCCCCCCceeccccHHHHHHHHHHhcCCcCCCchhhhchhcccccccch----hhhh----hhcccccccccc
Confidence 99999999999999998 69999999999999999999999999876433221111 0000 11111 122233
Q ss_pred cCCCCcchHHHHHHHHHHHhccCcchhhhhhccccccccccch
Q 022734 242 YRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESR 284 (293)
Q Consensus 242 ~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~~~ 284 (293)
....|..++++|+++||.||+.. |+|..++||...+..
T Consensus 343 ~~~~~~~~l~~l~~~f~~yy~~~-----Fdf~~~~I~~r~~~~ 380 (596)
T KOG2277|consen 343 SNSQNTGSLGELLLGFFSYYASL-----FDFRKNAISIRRGRA 380 (596)
T ss_pred ccccccchHHHHHHHHHHHHhhh-----cccccceeeeeeccc
Confidence 57889999999999999999964 999999888766543
No 4
>PTZ00418 Poly(A) polymerase; Provisional
Probab=99.94 E-value=3e-25 Score=214.67 Aligned_cols=209 Identities=22% Similarity=0.297 Sum_probs=175.4
Q ss_pred chHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhh-------c-------CCCCEEEeecCcccCCCCCCCCcce
Q 022734 6 VLEPILKDILGM--LNPLREDWETRMKVISDLREVVESVE-------S-------LRGATVEPFGSFVSNLFSRWGDLDI 69 (293)
Q Consensus 6 ~L~~~l~~~~~~--~~pt~~e~~~R~~~~~~l~~~l~~~~-------~-------~~~~~v~~fGS~~tgl~~~~SDiDl 69 (293)
.++.+|..++.. +-|++||.++|+++++.|++++++.. + ..+++|.+|||+..|.+.|+||||.
T Consensus 69 ~~s~~L~~~L~~~~~fes~ee~~kR~~vL~~L~~iv~~wv~~vs~~k~~~~~~~~~~~g~I~tfGSYrLGV~~pgSDID~ 148 (593)
T PTZ00418 69 KLSNELINLLKSYNLYETEEGKKKRERVLGSLNKLVREFVVEASIEQGINEEEASQISGKLFTFGSYRLGVVAPGSDIDT 148 (593)
T ss_pred hhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHhcCCeEEEEeccccccCCCCCCcccE
Confidence 345666666554 68899999999999999999997631 1 2468999999999999999999999
Q ss_pred eeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeec---------------
Q 022734 70 SIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISID--------------- 134 (293)
Q Consensus 70 ~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~--------------- 134 (293)
+++.|... .+.+++..+.+.|++.+.++++..|..|+||||||.. .||++|+.|.
T Consensus 149 L~V~P~~v--------tredFF~~f~~~L~~~~~V~eL~~V~~A~VPiIk~~~--~GI~iDL~fa~l~~~~vp~~~~~l~ 218 (593)
T PTZ00418 149 LCLAPRHI--------TRESFFSDFYAKLQQDPNITKLQPVPDAYTPVIKFVY--DGIDIDLLFANLPLPTIPDCLNSLD 218 (593)
T ss_pred EEECCCCC--------CHHHHHHHHHHHHhcCCCcceeeccCccccCeEEEEE--CCEEEeeeecccCCCCCCccccccC
Confidence 99998643 2457888899999988899999999999999999999 7999999884
Q ss_pred C--------------chhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCC
Q 022734 135 N--------------LCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAIL 200 (293)
Q Consensus 135 n--------------~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~il 200 (293)
+ .+|++.+..|...+-..+.||.++++||.|||+|||+....|++|+-+|.+||..-+|.. |
T Consensus 219 d~~lL~nlde~s~rSLNG~Rvtd~Il~lVPn~~~Fr~aLR~IKlWAkrRGIYsNv~GflGGV~wAILvARVCQLy-P--- 294 (593)
T PTZ00418 219 DDYILRNVDEKTVRSLNGCRVADLILASVPNKDYFRTTLRFIKLWAKRRGIYSNVLGYLGGVSWAILTARICQLY-P--- 294 (593)
T ss_pred chhhhhcCCHHHhhhhccHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHhC-C---
Confidence 1 157788888877776678899999999999999999999999999999999999999886 1
Q ss_pred CchhhhcCCCCCCccccccchhhHHHHHHhhhhcccccCCccCCCCcchHHHHHHHHHHHhccCcchhhhhhcccc-ccc
Q 022734 201 PPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNA-KCS 279 (293)
Q Consensus 201 P~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~-~c~ 279 (293)
+ .+.+.|+..||++|++ +++..-+ .|+
T Consensus 295 --------n--------------------------------------a~~s~Lv~~FF~iys~------W~Wp~PV~L~~ 322 (593)
T PTZ00418 295 --------N--------------------------------------FAPSQLIHKFFRVYSI------WNWKNPVLLCK 322 (593)
T ss_pred --------C--------------------------------------CCHHHHHHHHHHHhhc------CCCCCCeEccc
Confidence 1 2568999999999998 8888653 454
Q ss_pred c
Q 022734 280 L 280 (293)
Q Consensus 280 ~ 280 (293)
.
T Consensus 323 i 323 (593)
T PTZ00418 323 I 323 (593)
T ss_pred c
Confidence 3
No 5
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=99.94 E-value=4.6e-26 Score=179.76 Aligned_cols=114 Identities=31% Similarity=0.467 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcce
Q 022734 27 TRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRR 106 (293)
Q Consensus 27 ~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~ 106 (293)
.|++++++|++++++. +|++++++|||+++|+++|+||||+++..++. +....+.+..+++.|++.+.+.+
T Consensus 1 ~r~~i~~~l~~~i~~~--~~~~~v~~fGS~~~g~~~~~SDiDl~i~~~~~-------~~~~~~~l~~l~~~l~~~~~~~~ 71 (114)
T cd05402 1 KREEVLDRLQELIKEW--FPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNH-------RVDREDFLRKLAKLLKKSGEVVE 71 (114)
T ss_pred CHHHHHHHHHHHHHHH--CCCCEEEEecccccCCCCCCCCeeEEEEeCCC-------CccHHHHHHHHHHHHHhCCCcee
Confidence 3889999999999986 69999999999999999999999999998864 12356789999999998877889
Q ss_pred EEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHh
Q 022734 107 LQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWIS 149 (293)
Q Consensus 107 v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~ 149 (293)
+..|.+|||||||+.+..+|+.||||++|.+|+.||++++.|+
T Consensus 72 ~~~i~~ArVPiik~~~~~~~i~~Dis~~~~~g~~~s~li~~y~ 114 (114)
T cd05402 72 VEPIINARVPIIKFVDKPTGIEVDISFNNLNGIRNTKLLRAYV 114 (114)
T ss_pred eEEeccCCCCEEEEEEcCCCeEEEEEcccchHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999884
No 6
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]
Probab=99.88 E-value=2.4e-21 Score=181.30 Aligned_cols=181 Identities=22% Similarity=0.280 Sum_probs=147.7
Q ss_pred cchHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHhhh-------cC-------CCCEEEeecCcccCCCCCCCCcc
Q 022734 5 NVLEPILKDILG--MLNPLREDWETRMKVISDLREVVESVE-------SL-------RGATVEPFGSFVSNLFSRWGDLD 68 (293)
Q Consensus 5 ~~L~~~l~~~~~--~~~pt~~e~~~R~~~~~~l~~~l~~~~-------~~-------~~~~v~~fGS~~tgl~~~~SDiD 68 (293)
..|+.+|.+.+. -+-+++||...|.+++..|+.+++++. +. -+.++.+|||+..|...|+||||
T Consensus 31 ~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~~aggkIftfGSYRLGVhg~GADID 110 (562)
T KOG2245|consen 31 IALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIENAGGKIFTFGSYRLGVHGPGADID 110 (562)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCceEEeccceeecccCCCCCcc
Confidence 356666666544 367889999999999999999998641 12 36899999999999999999999
Q ss_pred eeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecC-------------
Q 022734 69 ISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDN------------- 135 (293)
Q Consensus 69 l~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n------------- 135 (293)
-.++.|... .+.+++..+...|+..+.++++..+..|.||||||+. +||++||-|..
T Consensus 111 tLcV~Prhv--------~R~DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf--~GI~IDllfArL~l~~VP~dldl~ 180 (562)
T KOG2245|consen 111 TLCVGPRHV--------SRSDFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKF--DGIEIDLLFARLALPVVPEDLDLS 180 (562)
T ss_pred eeeeccccc--------cHHHHHHHHHHHHhcCccccccccccccccceEEEEe--cCeeeeeeehhcccccCCCccccc
Confidence 988888653 2458999999999998999999999999999999999 89999997643
Q ss_pred ---------------chhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 022734 136 ---------------LCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 136 ---------------~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
.+|++.|.=|-...-....|+..++.||.|||+||++....|.+|+-+|.+||...+|..
T Consensus 181 ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA~LVARiCQLY 255 (562)
T KOG2245|consen 181 DDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWAMLVARICQLY 255 (562)
T ss_pred chHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHccC
Confidence 134444432222222234689999999999999999999999999999999999999986
No 7
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=99.71 E-value=2.1e-16 Score=143.20 Aligned_cols=181 Identities=20% Similarity=0.242 Sum_probs=141.9
Q ss_pred cchHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHhhh--------------cCCCCEEEeecCcccCCCCCCCCcc
Q 022734 5 NVLEPILKDILG--MLNPLREDWETRMKVISDLREVVESVE--------------SLRGATVEPFGSFVSNLFSRWGDLD 68 (293)
Q Consensus 5 ~~L~~~l~~~~~--~~~pt~~e~~~R~~~~~~l~~~l~~~~--------------~~~~~~v~~fGS~~tgl~~~~SDiD 68 (293)
++|+.+|..-+. -.-.++.|-+.|.+++..|+.+.++.. .-.+.++..|||+..|...|+||||
T Consensus 23 n~Ln~~li~eLk~~g~FE~~~E~~~Rv~VL~~Lq~~~~eFV~~vs~~K~m~dgmar~aGGKIFTyGSYRLGVhgpGsDID 102 (552)
T COG5186 23 NRLNGELIKELKERGFFEDDKEGQTRVRVLGKLQFMVREFVARVSRNKGMGDGMARPAGGKIFTYGSYRLGVHGPGSDID 102 (552)
T ss_pred hhhhHHHHHHHHHcCCcCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCceeeeecceeeeccCCCCCcc
Confidence 345555554433 345678889999999999999887531 0135799999999999999999999
Q ss_pred eeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCch--------hhh
Q 022734 69 ISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLC--------GQI 140 (293)
Q Consensus 69 l~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~--------g~~ 140 (293)
-.+..|... .+.+++..+...||..+...++..|+.|-|||||++. .||.+|+-|.... -+.
T Consensus 103 tLvvVPkHV--------sR~dFFt~f~~~Lrer~ei~eva~vpDAfVPIIK~KF--~GIsIDLifARLs~P~Vp~~l~Ls 172 (552)
T COG5186 103 TLVVVPKHV--------SRSDFFTHFYEELRERPEIEEVAKVPDAFVPIIKLKF--QGISIDLIFARLSIPVVPDGLNLS 172 (552)
T ss_pred eEEEecccc--------cHHHHHHHHHHHhccCcchhhhccCCcccceeEEEEe--cCccceeeeeeccCCcCCCccccc
Confidence 999888653 2567899999999998899999999999999999999 8999999774321 111
Q ss_pred hhHHH-----------------HHHhccCc---hhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 022734 141 KSKFL-----------------FWISQIDG---RFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 141 ~t~ll-----------------~~~~~~~~---~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
+-.++ ....++-| -++..++.||+||++|.++....|..++-+|.+||...+|..
T Consensus 173 d~nLLk~~dEkcilsLNGtRVTDeiL~LVP~~~vF~~ALRaIK~WAqRRavYaN~~GfpGGVAwam~VARiCQLY 247 (552)
T COG5186 173 DDNLLKSMDEKCILSLNGTRVTDEILNLVPSVKVFHSALRAIKYWAQRRAVYANPYGFPGGVAWAMCVARICQLY 247 (552)
T ss_pred chhhhhcchHHHHHhhcCceehHHHHHhCCchHHHHHHHHHHHHHHHhhhhhccccCCcchHHHHHHHHHHHhhc
Confidence 22222 22222222 478889999999999999999999999999999999999986
No 8
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=99.62 E-value=2.6e-14 Score=134.19 Aligned_cols=170 Identities=23% Similarity=0.316 Sum_probs=124.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhh--cCCCCEEEeecCcccCCCCC-CCCcceeeecCCCCcccccchhhH
Q 022734 11 LKDILGMLNPLREDWETRMKVISDLREVVESVE--SLRGATVEPFGSFVSNLFSR-WGDLDISIELSNGSCISSAGKKVK 87 (293)
Q Consensus 11 l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~--~~~~~~v~~fGS~~tgl~~~-~SDiDl~l~~~~~~~~~s~~k~~~ 87 (293)
+...++.+.||++|.++...+.+.+.+.+++.. ..+++++..+||++-|++++ +||||+.+..+... .++..
T Consensus 2 ~~~vl~~i~Ps~eE~~~~~~~~~~l~~~l~~~~~e~~~~~~v~~~GS~ArgT~L~G~sDIDIfi~f~~~~-----~~e~l 76 (408)
T TIGR03671 2 LEEVLERIKPTEEEREKLKKVADELIARLEEIIEELGVDAEVVLVGSYARGTWLKGDRDIDIFILFPKDT-----SREEL 76 (408)
T ss_pred hHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeeEecCCccCCCCceeEEEEeCCCC-----CHHHH
Confidence 456778899999999888887777777766532 13568999999999999999 89999999997542 12334
Q ss_pred HHHHHHHHHHHHhcC-CcceEEEeccCcceEEEEEEcCCceEEEE--eecCc------hhhhhhHHHHHHh--ccCchhH
Q 022734 88 QSLLGDLLRALRQKG-GYRRLQFVAHARVPILKFETIHQNISCDI--SIDNL------CGQIKSKFLFWIS--QIDGRFR 156 (293)
Q Consensus 88 ~~~l~~l~~~L~~~~-~~~~v~~I~~ArVPIIk~~~~~~gi~vDI--s~~n~------~g~~~t~ll~~~~--~~~~~~r 156 (293)
......++..+.+.+ ... ...|..|-++... .|++||| |+.-. .++..|.+...|+ +.+..++
T Consensus 77 ~~~gl~i~~~~~~~~~~~~----~~yaeHpYv~~~~--~G~~VDiVPcy~v~~g~~~~taVDRtp~H~~fv~~rl~~~~~ 150 (408)
T TIGR03671 77 EEYGLEIGHEVLKRGGNYE----ERYAEHPYVSGEI--EGFEVDVVPCYKVESGEEIISAVDRTPFHTRYVLERLDGKLR 150 (408)
T ss_pred HHHHHHHHHHHHhhCCCHh----heeccCceEEEEE--ccEEEEEEeeEEccCcCeeeccccCchHHHHHHHHhhhhhHH
Confidence 444445555554322 121 3478999999998 5999999 34322 2333455555444 2345688
Q ss_pred HHHHHHHHHHHHCCCCCC--CCCCCChHHHHHHHHHH
Q 022734 157 DMVLLVKEWAKAHDINNP--KTGTFNSYSLSLLVLFH 191 (293)
Q Consensus 157 ~L~~~iK~wak~~~l~~~--~~G~lsSy~l~lmvi~f 191 (293)
..++++|.|+|..|++++ ..+|||||..-||+++|
T Consensus 151 d~VRLlK~f~k~igvYGsE~~~~GFSGYl~ELLv~~y 187 (408)
T TIGR03671 151 DDVRLLKQFLKGIGVYGSELKTRGFSGYLCELLVIHY 187 (408)
T ss_pred HHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHHh
Confidence 999999999999999855 68999999999999997
No 9
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=99.61 E-value=6.2e-14 Score=133.50 Aligned_cols=171 Identities=22% Similarity=0.277 Sum_probs=123.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhc-CC-CCEEEeecCcccCCCCC-CCCcceeeecCCCCcccccchhhH
Q 022734 11 LKDILGMLNPLREDWETRMKVISDLREVVESVES-LR-GATVEPFGSFVSNLFSR-WGDLDISIELSNGSCISSAGKKVK 87 (293)
Q Consensus 11 l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~-~~-~~~v~~fGS~~tgl~~~-~SDiDl~l~~~~~~~~~s~~k~~~ 87 (293)
+...++.+.||++|.+.-....+.+.+.+++... .+ ++++.++||++.|++++ +|||||.+..+... .+...
T Consensus 3 ~~evl~~i~Ps~eE~~~l~~~~~~l~~~L~~~~~~~~~~~~V~l~GS~ArgT~L~GdsDIDIFv~fp~~~-----~~e~L 77 (447)
T PRK13300 3 LEEVLERIKPTEEEREKLKKVAEELIERLEEAIKELGLDAEVELVGSTARGTWLSGDRDIDIFVLFPKDT-----SREEL 77 (447)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeeecCCcccCCCCceeEEEEeCCCC-----CHHHH
Confidence 5667889999999988888777777777765421 22 39999999999999999 78999999997542 12222
Q ss_pred HHHHHHHHHHHHhc-CCcceEEEeccCcceEEEEEEcCCceEEEE--eecCc------hhhhhhHHHHHHhc--cCchhH
Q 022734 88 QSLLGDLLRALRQK-GGYRRLQFVAHARVPILKFETIHQNISCDI--SIDNL------CGQIKSKFLFWISQ--IDGRFR 156 (293)
Q Consensus 88 ~~~l~~l~~~L~~~-~~~~~v~~I~~ArVPIIk~~~~~~gi~vDI--s~~n~------~g~~~t~ll~~~~~--~~~~~r 156 (293)
.+....+...+.+. ..-..++ -|..|-++... .|++||| |++-. .++..|.+...|+. .+..++
T Consensus 78 ~~~gl~i~~~~~~~~~~~~~~~---yaeHpyv~~~~--~G~~VDiVPcy~v~~~~~~~saVDRtp~H~~fv~~rl~~~~~ 152 (447)
T PRK13300 78 EEKGLEIGKEVAKELLGDYEER---YAEHPYVTGEI--DGFEVDIVPCYKVESGEEIISAVDRTPFHTKYVKERLKGKLE 152 (447)
T ss_pred HHHHHHHHHHHHHhhCCcceee---eccCceEEEEE--CCEEEEEEeeEEccCcCcccccccCchHHHHHHHHhhhhhHH
Confidence 33333444444322 2222333 48999999998 5999999 33322 23444555555542 345689
Q ss_pred HHHHHHHHHHHHCCCCCC--CCCCCChHHHHHHHHHH
Q 022734 157 DMVLLVKEWAKAHDINNP--KTGTFNSYSLSLLVLFH 191 (293)
Q Consensus 157 ~L~~~iK~wak~~~l~~~--~~G~lsSy~l~lmvi~f 191 (293)
..++++|.|+|..|++++ ..+|||||..-||+++|
T Consensus 153 d~VRLlK~f~k~~gvYGsE~k~~GFSGYl~ELLv~~y 189 (447)
T PRK13300 153 DEVRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIHY 189 (447)
T ss_pred HHHHHHHHHHHhCCccchhhccCCccHHHHHHHHHHh
Confidence 999999999999999855 68999999999999996
No 10
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=9.8e-12 Score=115.66 Aligned_cols=174 Identities=22% Similarity=0.314 Sum_probs=130.4
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhh--cCCCCEEEeecCcccCCCCC-CCCcceeeecCCCCccccc
Q 022734 6 VLEPILKDILGMLNPLREDWETRMKVISDLREVVESVE--SLRGATVEPFGSFVSNLFSR-WGDLDISIELSNGSCISSA 82 (293)
Q Consensus 6 ~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~--~~~~~~v~~fGS~~tgl~~~-~SDiDl~l~~~~~~~~~s~ 82 (293)
.++..+...++.+.||+||.++-+.+.+.|...++++. ...++.+...||++-|++++ +.|||+.|..|...
T Consensus 2 ~~~~~l~evl~~i~P~~eE~~~~~~~~e~l~~~~~~~~~e~~~~aev~lVGS~AkgTwL~gd~DIDvFi~Fp~d~----- 76 (443)
T COG1746 2 TLEEVLEEVLKRIKPTEEERKKLKEVAEELRERINEIIEELGIDAEVVLVGSYAKGTWLRGDHDIDVFIAFPKDT----- 76 (443)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeecccCcccCCCcceeEEEECCCCC-----
Confidence 46777888999999999998888877777777666542 13589999999999999999 56999999998653
Q ss_pred chhhH-HHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEE--eecC------chhhhhhHHHHHHhc--c
Q 022734 83 GKKVK-QSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDI--SIDN------LCGQIKSKFLFWISQ--I 151 (293)
Q Consensus 83 ~k~~~-~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDI--s~~n------~~g~~~t~ll~~~~~--~ 151 (293)
.+.+. ..-|.-...++.. ..+ .+..|..|-+.... .|++||| |++- ..|+..|-|...|.+ +
T Consensus 77 ~~eel~~~GL~ig~~~l~~-~~~----~~~YAeHPYV~g~v--~G~eVDvVPCy~v~~~~~~~sAVDRTplHt~yv~e~L 149 (443)
T COG1746 77 SEEELEEKGLEIGREVLKR-GNY----EERYAEHPYVTGEV--DGYEVDVVPCYKVEDGEKIISAVDRTPLHTRYVEEHL 149 (443)
T ss_pred CHHHHHHHHHHHHHHHhcC-Cch----hhhhccCCeeEEEE--ccEEEEEEecccccCcccccccccCcchhHHHHHHHh
Confidence 12222 2233333334432 222 24579999999998 6999999 3322 346667777766653 5
Q ss_pred CchhHHHHHHHHHHHHHCCCCCC--CCCCCChHHHHHHHHHH
Q 022734 152 DGRFRDMVLLVKEWAKAHDINNP--KTGTFNSYSLSLLVLFH 191 (293)
Q Consensus 152 ~~~~r~L~~~iK~wak~~~l~~~--~~G~lsSy~l~lmvi~f 191 (293)
+.+.+.=++++|.++|.-|++++ ..+|||+|.--||+|+|
T Consensus 150 ~~~~~deVrLLK~FlK~iGvYGaE~rt~GFSGYL~ELLII~y 191 (443)
T COG1746 150 KGRQKDEVRLLKQFLKGIGVYGAELRTQGFSGYLCELLIIHY 191 (443)
T ss_pred cccchhHHHHHHHHHhccCccceeeeeccchHHHHHHHHhhh
Confidence 57777889999999999999977 57999999999999987
No 11
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=99.32 E-value=4e-12 Score=113.32 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccc
Q 022734 6 VLEPILKDILGML--NPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAG 83 (293)
Q Consensus 6 ~L~~~l~~~~~~~--~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~ 83 (293)
..+++|.++++.. -||+||.++|+++++.|++++++... .
T Consensus 21 ~~s~~L~~~l~~~~~~es~ee~~~R~~vl~~L~~iv~~wv~--~------------------------------------ 62 (254)
T PF04928_consen 21 KRSASLEEFLKDYGLFESEEEEQKREEVLRKLQQIVKEWVK--Q------------------------------------ 62 (254)
T ss_dssp HHHHHHHHHHHHCT-S--HHHHHHHHHHHHHHHHHHHHHHH--H------------------------------------
T ss_pred HhHHHHHHHHHHcCCCCChHHHhHHHHHHHHHHHHHHHHHH--h------------------------------------
Confidence 4567778877765 78999999999999999999998531 2
Q ss_pred hhhHHHHHHHHHHHHHhcCCcceEEEeccCcce-EEEEEEcCCceEEE-EeecCchhhhhhHHHHHHhccCchhHHHHHH
Q 022734 84 KKVKQSLLGDLLRALRQKGGYRRLQFVAHARVP-ILKFETIHQNISCD-ISIDNLCGQIKSKFLFWISQIDGRFRDMVLL 161 (293)
Q Consensus 84 k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVP-IIk~~~~~~gi~vD-Is~~n~~g~~~t~ll~~~~~~~~~~r~L~~~ 161 (293)
...++| .+.+.+..-=-.+| -|+...+|++.+..|...+-....||.++++
T Consensus 63 ---------------------------~~~~~p~~l~~~~~~~l~~ld~~s~~sLnG~Rv~~~il~~Vp~~~~Fr~~lR~ 115 (254)
T PF04928_consen 63 ---------------------------ALPRVPEDLDLLDDDPLRNLDEASVRSLNGVRVTDYILRLVPNQETFRTALRF 115 (254)
T ss_dssp ---------------------------SSSSB-TT--TT-GGGGTT--HHHHHHHHHHHHHHHHHCTSS-HHHHHHHHHH
T ss_pred ---------------------------hhcCCCcccccCCchhhhCCCHhhccCcccccHHHHHHHHCCCHHHHHHHHHH
Confidence 011111 01111000000011 1334457888888888777666889999999
Q ss_pred HHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCccccccchhhHHHHHHhhhhcccccCCc
Q 022734 162 VKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDK 241 (293)
Q Consensus 162 iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~~~~ 241 (293)
||.||++|||++...|.||+.+|++||...+|.. | +
T Consensus 116 IK~WAk~RGIYsn~~GylGGI~waILvArvcql~-P----n--------------------------------------- 151 (254)
T PF04928_consen 116 IKLWAKRRGIYSNVFGYLGGIHWAILVARVCQLY-P----N--------------------------------------- 151 (254)
T ss_dssp HHHHHHHTT-B-CCCTSB-HHHHHHHHHHHHHHS-T----T---------------------------------------
T ss_pred HHHHHHHccccchhhccchHHHHHHHHHHHHHHC-c----c---------------------------------------
Confidence 9999999999999999999999999999999996 1 0
Q ss_pred cCCCCcchHHHHHHHHHHHhccCcchhhhhhccccc-cccccch
Q 022734 242 YRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAK-CSLDESR 284 (293)
Q Consensus 242 ~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~-c~~~~~~ 284 (293)
.+.+.|+..||.+|++ +++..-++ ++...+.
T Consensus 152 ------~~~~~ll~~FF~~ys~------W~W~~PV~l~~~~~~~ 183 (254)
T PF04928_consen 152 ------ASPSTLLSRFFQIYSQ------WDWPNPVVLDPIEDGP 183 (254)
T ss_dssp --------HHHHHHHHHHHHHC------S-TTS-EESS-----S
T ss_pred ------ccccchHHHHHHHhcC------CCCCCceeecccccCc
Confidence 1456799999999998 88885443 5555443
No 12
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=98.28 E-value=1.2e-05 Score=65.48 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCC-CCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceE
Q 022734 29 MKVISDLREVVESVESLRGATVEPFGSFVSNLFSR-WGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRL 107 (293)
Q Consensus 29 ~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~-~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v 107 (293)
..+.+.|++-.... ..+...+.++||++.|++++ .||||+++..+..... ......+++..+.+.|.+.... ..
T Consensus 10 ~~i~~~L~~~~~~~-~~~~~~~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~-~~ 84 (143)
T cd05400 10 REIREALKESLSEL-AGRVAEVFLQGSYARGTALRGDSDIDLVVVLPDDTSF---AEYGPAELLDELGEALKEYYGA-NE 84 (143)
T ss_pred HHHHHHHHHhcccc-cccccEEEEEcceeCCCCCCCCCceeEEEEEcCcccc---cccCHHHHHHHHHHHHHHhcCc-cc
Confidence 34444444444321 12468999999999999988 7999999998865321 0124567888888888764432 11
Q ss_pred EEeccCcceEEEEEEcCCceEEEE
Q 022734 108 QFVAHARVPILKFETIHQNISCDI 131 (293)
Q Consensus 108 ~~I~~ArVPIIk~~~~~~gi~vDI 131 (293)
.. ..+-|-|++.....++++||
T Consensus 85 ~~--~~~~~~v~v~~~~~~~~vDv 106 (143)
T cd05400 85 EV--KAQHRSVTVKFKGQGFHVDV 106 (143)
T ss_pred cc--ccCceEEEEEEcCCCeEEEE
Confidence 22 34456666666546899999
No 13
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=98.23 E-value=2.5e-06 Score=56.79 Aligned_cols=41 Identities=20% Similarity=0.469 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeee
Q 022734 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIE 72 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~ 72 (293)
++++.+++.+++. .+..++.+|||++.|.+.+.||||+++.
T Consensus 2 ~~l~~i~~~l~~~--~~~~~v~lfGS~arg~~~~~SDIDi~v~ 42 (49)
T cd05397 2 ELLDIIKERLKKL--VPGYEIVVYGSLVRGLLKKSSDIDLACV 42 (49)
T ss_pred HHHHHHHHHHHhh--cCCcEEEEECCcCCCCCCCCCCEEEEEE
Confidence 4567777777765 4678999999999999999999999986
No 14
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1. The signatures that define this group of sequences often occur towards the C terminus after the PAP/25A core domain IPR001201 from INTERPRO.; PDB: 2B4V_A 2B56_A 2B51_A 4EP7_B 2NOM_B 2Q0G_B 2Q0D_B 2Q0C_A 2Q0F_A 2Q0E_A ....
Probab=98.18 E-value=6.4e-07 Score=62.12 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhccCcchhhhhhccccccccccchhhhh
Q 022734 249 SLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLLY 288 (293)
Q Consensus 249 sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~~~~~~~ 288 (293)
|||+||++||+||+.+ |||+.++||...|+. +.+
T Consensus 1 slg~Ll~~Ff~~Y~~~-----Fd~~~~~Isi~~g~~-~~k 34 (60)
T PF03828_consen 1 SLGELLLGFFEYYGRK-----FDYENNVISIRNGGY-FPK 34 (60)
T ss_dssp -HHHHHHHHHHHHHHT-----S-TTTEEEESSSSSE-EEH
T ss_pred CHHHHHHHHHHHhCCc-----CCCCceEEEecCCce-EEh
Confidence 6899999999999976 999999999988554 443
No 15
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=98.15 E-value=1.4e-06 Score=65.42 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 32 ISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 32 ~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
++++.+.+++. ++...+.+|||+++|.+.|+||||+++..+..
T Consensus 1 i~~i~~~l~~~--~~~~~v~lfGS~a~g~~~~~SDIDl~i~~~~~ 43 (93)
T PF01909_consen 1 IEEIKEILKEL--FGVAEVYLFGSYARGDATPDSDIDLLIILDEP 43 (93)
T ss_dssp HHHHHHHHHHH--HTTEEEEEEHHHHHTSSCTTSCEEEEEEESST
T ss_pred CHHHHHHHHHH--CCCCEEEEECCcccCcCCCCCCEEEEEEeCCc
Confidence 35677777775 45889999999999999999999999998865
No 16
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=97.79 E-value=3.3e-05 Score=57.49 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCC
Q 022734 31 VISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGS 77 (293)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~ 77 (293)
.++.+.+.+++... .-..+.+|||++.|-+.++||||+++..+...
T Consensus 3 ~~~~i~~~l~~~~~-~i~~i~LfGS~arg~~~~~SDiDl~vi~~~~~ 48 (93)
T cd05403 3 ILEEILEILRELLG-GVEKVYLFGSYARGDARPDSDIDLLVIFDDPL 48 (93)
T ss_pred hHHHHHHHHHHHhC-CccEEEEEeeeecCCCCCCCCeeEEEEeCCCC
Confidence 34556666665421 25789999999999999999999999987653
No 17
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=97.29 E-value=0.0018 Score=49.09 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 29 MKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 29 ~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
+.+++.+...+++. +.-.++-+|||++-|=..|+||||+.|....+
T Consensus 8 ~~~lr~~~~~l~~k--~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~ 53 (97)
T COG1669 8 KKILRKIKPELKEK--YGVKRVAVFGSYARGEQKPDSDIDILVEFEPG 53 (97)
T ss_pred HHHHHHHHHHHHHH--hCCceEEEeeeeecCCCCCCCCceeEEeecCC
Confidence 34466666667652 34578999999999999999999999998765
No 18
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=97.21 E-value=0.0044 Score=54.89 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=79.6
Q ss_pred EEEeecCcccCCCCCCC-CcceeeecCCCCcccccchhhHHHHHHHHHH----HHHhcCCcceEEEeccCcceEEEEEEc
Q 022734 49 TVEPFGSFVSNLFSRWG-DLDISIELSNGSCISSAGKKVKQSLLGDLLR----ALRQKGGYRRLQFVAHARVPILKFETI 123 (293)
Q Consensus 49 ~v~~fGS~~tgl~~~~S-DiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~----~L~~~~~~~~v~~I~~ArVPIIk~~~~ 123 (293)
.|.-.||.+.|+.+.+. ++|+++....-+ ....++.+++ .|+....-.....+..+..|.+++...
T Consensus 4 gV~rVG~~aKG~ll~Gd~~~~lVv~c~~~P---------T~~ll~~v~~~l~e~l~~~~~~e~~~~~~~~~~~~~~~~i~ 74 (246)
T smart00572 4 GVMRVGSFAKGTLLKGDNVAELVLLCKEKP---------TSELVARLARKLPEQLKAVTEDEALIIVTSTKEPTMEVGIL 74 (246)
T ss_pred ceEEeeeeccCceecCCCceeEEEEecCCC---------cHHHHHHHHHHHHHHHhhcCcccceeeeeccCCCceeEEEE
Confidence 36778999999999986 999999987543 2334555444 444322111122334555666654432
Q ss_pred CCc--eEEEE----------------------eecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCC
Q 022734 124 HQN--ISCDI----------------------SIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTF 179 (293)
Q Consensus 124 ~~g--i~vDI----------------------s~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~l 179 (293)
-++ +.+++ +.....+++.+++.++-+..-..++.+++++|-|.++...- +.|
T Consensus 75 ltSp~~r~~~~~~~~~~~~~~~~p~~~ld~~~cl~aLAalRhakWFq~~a~~l~s~~iviRilKd~~~R~~~~----~pL 150 (246)
T smart00572 75 ITSPLARVELLITTVPENLRKLDPEDHLDRKKCLSALASLRHAKWFQARASGLQSCVIVIRVLRDLCNRVPTW----QPL 150 (246)
T ss_pred EecccccccccccccCcccccCCccccCCHHHHHHHHHHHHHhHHHHHhccCCcchhhHHHHHHHHHHhcccc----ccc
Confidence 111 11111 22223456777777766665557999999999998887542 358
Q ss_pred ChHHHHHHHHH
Q 022734 180 NSYSLSLLVLF 190 (293)
Q Consensus 180 sSy~l~lmvi~ 190 (293)
+||.+-+++-+
T Consensus 151 ~~w~iELl~~~ 161 (246)
T smart00572 151 SGWPLELLVEK 161 (246)
T ss_pred ccccHHHHHHH
Confidence 99999988754
No 19
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=97.17 E-value=0.0076 Score=63.88 Aligned_cols=140 Identities=17% Similarity=0.260 Sum_probs=89.8
Q ss_pred CcccCCCCC---CCCcceeeecCCCCccc---ccchh--hHHHHHHHHHHHH--HhcCCcceEE---EeccCcceEEEEE
Q 022734 55 SFVSNLFSR---WGDLDISIELSNGSCIS---SAGKK--VKQSLLGDLLRAL--RQKGGYRRLQ---FVAHARVPILKFE 121 (293)
Q Consensus 55 S~~tgl~~~---~SDiDl~l~~~~~~~~~---s~~k~--~~~~~l~~l~~~L--~~~~~~~~v~---~I~~ArVPIIk~~ 121 (293)
|++.+++.+ +-.|||.|..|....-. -+.|. .+.-.|..|++.| .+.....+++ .-...+-||+.+.
T Consensus 1 S~~l~t~~k~~~~~~VDl~v~mP~~~fq~KDyln~RY~~KRA~YLa~iA~~L~~~~~~~~~~v~~~~~~gd~~kPil~l~ 80 (972)
T PF03813_consen 1 SYALKTMIKSKPNLTVDLAVEMPKSLFQEKDYLNYRYFHKRALYLAYIAAHLQKKKSKLFVDVSFEYLNGDPLKPILVLR 80 (972)
T ss_pred CcccccccccCCCCeeEEEEeCChhhcCchhhccchHHHHHHHHHHHHHHHHhhhccccceeEEEEeCCCCCCCCeEEEE
Confidence 556666554 45999999998753200 00111 1334678889999 3333444443 2356688999887
Q ss_pred EcC---------CceEEEEee----------------cC---------------chhhhhhHH------------HHHHh
Q 022734 122 TIH---------QNISCDISI----------------DN---------------LCGQIKSKF------------LFWIS 149 (293)
Q Consensus 122 ~~~---------~gi~vDIs~----------------~n---------------~~g~~~t~l------------l~~~~ 149 (293)
-.. ++..+.|-. || ....+|+.+ ++...
T Consensus 81 p~~~~~~~~~~~~~~~iRi~~~~~~~~F~~~rl~P~rnnvR~~~~~~~~~~~~~pTP~YNssIL~D~~~~~~l~~l~~~~ 160 (972)
T PF03813_consen 81 PKGKKDSDDFSKTKFRIRIIPSIPSDTFPLSRLAPSRNNVRPSWFDEEDSSSLPPTPHYNSSILEDMLMEEHLKYLHEAS 160 (972)
T ss_pred ECCccccccccCCcEEEEEEecCCcccCCHHhcCCCCCccCcCcccccccCCCCCCCcchHHHHHHHhHHHHHHHHHHHH
Confidence 321 123444311 11 122345433 34445
Q ss_pred ccCchhHHHHHHHHHHHHHCCCCCCC-CCCCChHHHHHHHHHHHhc
Q 022734 150 QIDGRFRDMVLLVKEWAKAHDINNPK-TGTFNSYSLSLLVLFHFQT 194 (293)
Q Consensus 150 ~~~~~~r~L~~~iK~wak~~~l~~~~-~G~lsSy~l~lmvi~fLQ~ 194 (293)
+..|.++.-++++|.|+++||+.... .||++++-|.+++++-+|.
T Consensus 161 ~~~p~f~dA~iLlkvWl~QRg~~~~~~~~Gf~~f~~s~lla~Ll~~ 206 (972)
T PF03813_consen 161 KSSPAFRDACILLKVWLRQRGFGSGISQGGFGGFEWSMLLAYLLQG 206 (972)
T ss_pred hcCHHHHHHHHHHHHHHhcCCCCcccCCCCcchHHHHHHHHHHHcC
Confidence 56799999999999999999998653 4899999999999999988
No 20
>COG1708 Predicted nucleotidyltransferases [General function prediction only]
Probab=96.92 E-value=0.0057 Score=47.96 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=27.2
Q ss_pred CCCCEEEeecCcccCCCCCCCCcceeeecC
Q 022734 45 LRGATVEPFGSFVSNLFSRWGDLDISIELS 74 (293)
Q Consensus 45 ~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~ 74 (293)
.....+++|||++.|-+.+.||||+.+...
T Consensus 24 ~~~~~v~LfGS~arG~~~~~SDiDv~vv~~ 53 (128)
T COG1708 24 GGDLLIYLFGSYARGDFVKESDIDLLVVSD 53 (128)
T ss_pred CCCeEEEEEccCcccccccCCCeeEEEEcC
Confidence 356899999999999999999999999973
No 21
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=96.74 E-value=0.006 Score=54.89 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCC--CEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 34 DLREVVESVESLRG--ATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 34 ~l~~~l~~~~~~~~--~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
.+.++++.. .++ .-|++|||.+.|-..|.||||+.+..+..
T Consensus 15 ~~~~~l~~~--l~~~l~~vyLfGS~~~G~~~p~SDIDllvvv~~~ 57 (262)
T PRK13746 15 EACAVIERH--LEPTLLAIHLYGSAVDGGLKPHSDIDLLVTVAVP 57 (262)
T ss_pred HHHHHHHHh--CcccEEEEEEECCcccCCCCCCCceeEEEEeCCC
Confidence 344555543 233 36899999999999999999999998864
No 22
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=96.59 E-value=0.0031 Score=53.64 Aligned_cols=58 Identities=17% Similarity=0.369 Sum_probs=43.5
Q ss_pred hhhhhHHHHHHhccC-chhHHHHHHHHHHHHHCCCCCCCCCCC-ChHHHHHHHHHHHhcC
Q 022734 138 GQIKSKFLFWISQID-GRFRDMVLLVKEWAKAHDINNPKTGTF-NSYSLSLLVLFHFQTC 195 (293)
Q Consensus 138 g~~~t~ll~~~~~~~-~~~r~L~~~iK~wak~~~l~~~~~G~l-sSy~l~lmvi~fLQ~~ 195 (293)
++..|++-+.+++.. +.++.|+++||+|.+++.-.....+++ +||+|.||+||.-.+.
T Consensus 26 S~cftelQ~~Fvk~rP~klK~LIrLVKhWy~~~~~~~~~~~~lPpsYaLELLtIyAWE~g 85 (190)
T PF10421_consen 26 SACFTELQRNFVKHRPTKLKNLIRLVKHWYQQCKKKKCGGGSLPPSYALELLTIYAWEQG 85 (190)
T ss_dssp GGGGHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHCC--HTT-S--HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhc
Confidence 345577777777655 589999999999999887664444555 6899999999998775
No 23
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=96.17 E-value=0.15 Score=41.90 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=70.4
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCc
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQN 126 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~g 126 (293)
.....+-|...-|+..++|||||++..++ ...+...+.+...+...|+--.. .-...|.+.+.....|
T Consensus 15 ~~~PiL~GTiPi~Idi~~SDLDIic~~~d-----------~~~F~~~l~~~f~~~~~f~~~~~-~i~~~~~~~~~F~~~~ 82 (152)
T PF14091_consen 15 AYDPILVGTIPIGIDIPGSDLDIICEVPD-----------PEAFEQLLQSLFGQFEGFTIKEK-TIRGEPSIVANFRYEG 82 (152)
T ss_pred cCCCEEecccccccCCCCCCccEEEEeCC-----------HHHHHHHHHHHhccCCCceeeec-eeCCceeEEEEEEECC
Confidence 34667889999999999999999998764 23344444444444444432211 1234555555544488
Q ss_pred eEEEEeecC-----chhhhhhHHHHHHhccC-chhHHHHHHHH--------HHHHHCCCC
Q 022734 127 ISCDISIDN-----LCGQIKSKFLFWISQID-GRFRDMVLLVK--------EWAKAHDIN 172 (293)
Q Consensus 127 i~vDIs~~n-----~~g~~~t~ll~~~~~~~-~~~r~L~~~iK--------~wak~~~l~ 172 (293)
..+.|-..+ .+|.+.-.+-....+.. |.+|.=++-+| +||+..||.
T Consensus 83 ~~~EiF~Q~~Pv~~QnayrHm~iE~rLL~~~g~~~r~~Ii~LK~~GlKTEPAFa~lLgL~ 142 (152)
T PF14091_consen 83 FPFEIFGQPIPVEEQNAYRHMLIEHRLLELHGPSFREEIIELKESGLKTEPAFAKLLGLE 142 (152)
T ss_pred ceEEEeecCCChhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCcchHHHHHHhCCC
Confidence 888886633 34555443334444444 88888888887 466666664
No 24
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core. It is predominantly found in Archaeal tRNA nucleotidyltransferases, following the catalytic nucleotidyltransferase domain []. ; GO: 0004810 tRNA adenylyltransferase activity, 0016437 tRNA cytidylyltransferase activity; PDB: 3OUY_B 2ZHB_A 2ZH1_A 2ZH2_A 1UET_A 2ZH7_A 1R8B_A 2DR5_A 1TFW_C 3OVA_A ....
Probab=95.43 E-value=0.022 Score=44.30 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=26.7
Q ss_pred HHHHHHHHHHCCCCCC--CCCCCChHHHHHHHHHH
Q 022734 159 VLLVKEWAKAHDINNP--KTGTFNSYSLSLLVLFH 191 (293)
Q Consensus 159 ~~~iK~wak~~~l~~~--~~G~lsSy~l~lmvi~f 191 (293)
++++|.++|..|++++ ..+|+|+|...+||++|
T Consensus 3 VrLLK~FlK~igvYGse~~~~GFSGYL~ELLii~y 37 (114)
T PF09249_consen 3 VRLLKQFLKGIGVYGSELKTRGFSGYLCELLIIHY 37 (114)
T ss_dssp HHHHHHHHHHTT-B-SSTTT-SB-HHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCcchhhhcCcchHHHHHHHHHHH
Confidence 6899999999999866 57999999999999987
No 25
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=94.65 E-value=0.3 Score=43.64 Aligned_cols=129 Identities=13% Similarity=0.189 Sum_probs=78.6
Q ss_pred ecCcccCCCCCCC-CcceeeecCCCCcccccchhhHHHHHHHHHH----HHHhcCCcc-----eE-EEeccCcceEEEEE
Q 022734 53 FGSFVSNLFSRWG-DLDISIELSNGSCISSAGKKVKQSLLGDLLR----ALRQKGGYR-----RL-QFVAHARVPILKFE 121 (293)
Q Consensus 53 fGS~~tgl~~~~S-DiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~----~L~~~~~~~-----~v-~~I~~ArVPIIk~~ 121 (293)
.||.+.|+.+.+. ++|+++....-+ ..+.+.++++ .|+....-. +. ..+.+.+.|.+...
T Consensus 2 VG~~aKGllL~Gd~~~eLVVlck~kP---------T~~lL~~v~~~L~~~L~~~~~~ev~~~~e~~~~~~~~~~~~~~~~ 72 (248)
T PF07528_consen 2 VGSFAKGLLLKGDNDVELVVLCKEKP---------TKELLNRVAEKLPEQLKKVTPEEVTNSVEAAIIIDSCKEPKLEVG 72 (248)
T ss_pred cceecCCceecCCceEeEEEEcCCCC---------cHHHHHHHHHHHHHHHhhhCccccccchhhhhhhcccccccceee
Confidence 4999999999987 999999987543 2345555444 443321110 00 11122233433332
Q ss_pred E--cCCceEEEE----------------------eecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCC
Q 022734 122 T--IHQNISCDI----------------------SIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTG 177 (293)
Q Consensus 122 ~--~~~gi~vDI----------------------s~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G 177 (293)
. ....+.+++ +..+..+++.+++.+.-+..-+.++.+++++|-...+.. ..+
T Consensus 73 ~~lts~~~r~~~~~~~~~~~~~~~dp~~~Ld~~~cl~aLaalRhakWFq~~a~~l~s~~~viRIlrDl~~R~p----~w~ 148 (248)
T PF07528_consen 73 IDLTSPVMRVRVLITTIPENLSKLDPEDHLDRKKCLSALAALRHAKWFQARANGLQSCVIVIRILRDLRQRVP----TWQ 148 (248)
T ss_pred EEecCCceEEEEeccccCccccccChhhcCCHHHHHHHHHHHHHhHHHHHHhccCCCcceehhhHHHHHHhCC----CCC
Confidence 1 111222222 222334667788888777766788999999999977653 356
Q ss_pred CCChHHHHHHHHHHHhc
Q 022734 178 TFNSYSLSLLVLFHFQT 194 (293)
Q Consensus 178 ~lsSy~l~lmvi~fLQ~ 194 (293)
.|++|++-+++-+-+-.
T Consensus 149 ~L~~W~leLL~~~~i~~ 165 (248)
T PF07528_consen 149 PLSSWALELLVEKAISN 165 (248)
T ss_pred CCChhHHHHHHHHHeee
Confidence 89999999998877763
No 26
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=94.64 E-value=0.17 Score=44.39 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhcCCCCEEEeecCcc----cCC--CCCCCCcceeeecCC
Q 022734 31 VISDLREVVESVESLRGATVEPFGSFV----SNL--FSRWGDLDISIELSN 75 (293)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~~v~~fGS~~----tgl--~~~~SDiDl~l~~~~ 75 (293)
.++.|...... .+....+|||.+ ||+ -.++||||+.+..++
T Consensus 108 ~l~~l~~~~~~----~g~~~gv~GS~a~qlaTG~~~l~~~SDLDLLi~~~~ 154 (221)
T PRK02098 108 TLRALLALAAA----HGVDCRVFGSLAWQALTGLPYLSASSDLDLLWPLPA 154 (221)
T ss_pred HHHHHHHHHHh----CCCcEEEeeehHHHHhhCCcccCCCCCeeEEEecCC
Confidence 34455555544 357999999999 999 778999999997764
No 27
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific. Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.
Probab=94.46 E-value=0.099 Score=45.29 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhcCCCCEEEeecCc----ccCC--CCCCCCcceeeecCC
Q 022734 32 ISDLREVVESVESLRGATVEPFGSF----VSNL--FSRWGDLDISIELSN 75 (293)
Q Consensus 32 ~~~l~~~l~~~~~~~~~~v~~fGS~----~tgl--~~~~SDiDl~l~~~~ 75 (293)
++.+...... -+....+|||. +||+ ..++||||+.+..++
T Consensus 97 l~~l~~~~~~----~~~~~gv~GS~~~qlaTg~~~~~~~SDLDLLi~~~~ 142 (202)
T TIGR03135 97 LRALDALLDA----LGVPWGVYGSAGWQLLTGLPYLHASSDLDLLLRAPS 142 (202)
T ss_pred HHHHHHHHHh----CCCcEEEecchHHHHhcCCcccCCCCCeeEEEcCCC
Confidence 3444444443 36799999999 8999 778999999998764
No 28
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=94.05 E-value=0.12 Score=40.44 Aligned_cols=70 Identities=30% Similarity=0.402 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcce
Q 022734 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRR 106 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~ 106 (293)
++.+.+++.++++ .|++++.+-||+.-|-... +|||+.|.-++..... .....++.++...|.+.+...+
T Consensus 9 ~i~~~V~~~~~~i--~p~~~v~i~GSyRRGK~~~-gDiDiLIt~~~~~~~~----~~~~~~l~~lv~~L~~~g~i~~ 78 (112)
T PF14792_consen 9 EIEEIVKEALEKI--DPGLEVEICGSYRRGKETS-GDIDILITHPDPSSVS----KKLEGLLEKLVKRLEEKGFITD 78 (112)
T ss_dssp HHHHHHHHHHHCC--STT-EEEEEHHHHTT-SEE-SSEEEEEEETTCSTTT----CSTTCHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhc--CCCcEEEEccccccCCCcC-CCeEEEEeCCCcCcch----hhHHHHHHHHHHHHHhCCeEEE
Confidence 4455666777776 5899999999999876543 4999999988754211 1134588888888887665443
No 29
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription]
Probab=93.19 E-value=4.8 Score=36.22 Aligned_cols=181 Identities=14% Similarity=0.213 Sum_probs=103.5
Q ss_pred CCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCC------CEEEeecCcccCCCCCCCC-cceeeecC
Q 022734 2 GSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRG------ATVEPFGSFVSNLFSRWGD-LDISIELS 74 (293)
Q Consensus 2 ~~~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~------~~v~~fGS~~tgl~~~~SD-iDl~l~~~ 74 (293)
++...++++|.+=-+.+.|+++|..+-...+.+++.++.... -|+ ..|.-.||+.+|+.+-++| -|+++...
T Consensus 36 a~D~~f~~alLkRnqdL~P~~~~q~~I~~~vtKV~~vLdn~~-~~~L~~~~ieevrqVGSF~k~T~~tg~~~advVViLk 114 (362)
T KOG3793|consen 36 APDTSFSEALLKRNQDLAPNSAEQASILSLVTKVNNVLDNLV-APGLFEVQIEEVRQVGSFKKGTMTTGHNVADLVVILK 114 (362)
T ss_pred CcchHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHhhc-cCCceEeehhhhhhccceeccccccCCcccceEEEee
Confidence 456789999999899999999998888888888888887642 233 3466789999999887764 47777654
Q ss_pred CCCcccccchhhHHHHHHHHHHH------------HHhcCCcceEEEeccCcceEEEEEEcC--C----ceEEEEee--c
Q 022734 75 NGSCISSAGKKVKQSLLGDLLRA------------LRQKGGYRRLQFVAHARVPILKFETIH--Q----NISCDISI--D 134 (293)
Q Consensus 75 ~~~~~~s~~k~~~~~~l~~l~~~------------L~~~~~~~~v~~I~~ArVPIIk~~~~~--~----gi~vDIs~--~ 134 (293)
.-+ + ++....+=+++.+. +....++. +.. .+|+|-|+--.-+. + .+..|+-. .
T Consensus 115 TLP---t--~EaV~aLg~Kv~e~lka~d~~Evltvl~~e~G~~-I~s-~~~~VRiLIt~iP~n~~KLEP~lHLD~K~M~~ 187 (362)
T KOG3793|consen 115 TLP---T--LEAVAALGNKVVESLRAQDPSEVLTVLTNETGFE-ISS-SDATVRILITTVPPNLRKLEPELHLDIKVMQS 187 (362)
T ss_pred cCC---c--HHHHHHHHHHHHHHhhhcChHHHHHHHhhcccee-eec-ccceEEEEEeecCchhcccChhhhhhHHHHHH
Confidence 321 1 11111122223332 33333332 221 36777776554432 2 23344322 1
Q ss_pred CchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 022734 135 NLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 135 n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
+..+++.+++...-+. ...++.|++++|-.-.+.. ...-|+-|.+-++.-+-+.+.
T Consensus 188 ~l~a~RH~~WFee~A~-~s~~~~lir~LKDlr~r~~----~F~PLs~W~ldll~h~avmNn 243 (362)
T KOG3793|consen 188 ALAAIRHARWFEENAS-QSTVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNN 243 (362)
T ss_pred HHHHHhhhhhhhhhhh-HHHHHHHHHHHHHHHhhcC----CCCCchHHHHHHHHHHHHHcC
Confidence 2224444444433322 2457778888887644432 123466676666655555554
No 30
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=93.17 E-value=1.1 Score=41.23 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEE
Q 022734 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQF 109 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~ 109 (293)
.+.+.|.+.++.+ .|..++.+-||+.-|..+ .+|||+++..++.. ....+.++...|.+.+....+.
T Consensus 145 ~~a~~i~~~l~~~--~~~~~v~i~GS~RRg~et-~gDiDilv~~~~~~---------~~~~~~~v~~~l~~~~~~~~~~- 211 (307)
T cd00141 145 AIAEIIKEALREV--DPVLQVEIAGSYRRGKET-VGDIDILVTHPDAT---------SRGLLEKVVDALVELGFVTEVL- 211 (307)
T ss_pred HHHHHHHHHHHhC--CCceEEEEcccccCCCCc-cCCEEEEEecCCcc---------ccccHHHHHHHHHhCCCeehhh-
Confidence 3444555556554 378999999999866443 35999999776431 0234555666666554432211
Q ss_pred eccCcceEEEEEE----cCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCC
Q 022734 110 VAHARVPILKFET----IHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (293)
Q Consensus 110 I~~ArVPIIk~~~----~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~ 172 (293)
.....-..... ...+..|||-+-.... ..+.++.+--+ +...+-++.||+++|..
T Consensus 212 --~~g~~k~~~~~~~~~~~~~~rVDl~~~p~~~-~~~all~fTGs-----~~~nr~lR~~A~~~G~~ 270 (307)
T cd00141 212 --SKGDTKASGILKLPGGWKGRRVDLRVVPPEE-FGAALLYFTGS-----KQFNRALRRLAKEKGLK 270 (307)
T ss_pred --hCCCceEEEEEecCCCCCceEEEEEEeCHHH-HHHHHHHhhCC-----HHHHHHHHHHHHHcCCe
Confidence 11111122221 2348999998854332 22333332221 22334459999998874
No 31
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human. In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].
Probab=90.37 E-value=21 Score=38.28 Aligned_cols=170 Identities=18% Similarity=0.252 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCC--CEEEeecCc--ccCCCCCC--------CCcceeeecCCCCccccc---chh
Q 022734 21 LREDWETRMKVISDLREVVESVESLRG--ATVEPFGSF--VSNLFSRW--------GDLDISIELSNGSCISSA---GKK 85 (293)
Q Consensus 21 t~~e~~~R~~~~~~l~~~l~~~~~~~~--~~v~~fGS~--~tgl~~~~--------SDiDl~l~~~~~~~~~s~---~k~ 85 (293)
..+....-.++++.+++.|+++...|= ..|.|-++. .|.+..|. --+|++|.......++.. -++
T Consensus 497 ~~~~~~~~~~af~~L~k~lr~L~~LPL~I~~v~p~sp~lRyts~~pp~p~~~~~~~~p~~vvl~fE~S~kWPddl~AI~~ 576 (972)
T PF03813_consen 497 DEESFQSVMRAFDELEKDLRSLEDLPLSITSVQPASPALRYTSVFPPVPHAVPRYIPPIEVVLQFESSGKWPDDLEAIQK 576 (972)
T ss_pred chHHHHHHHHHHHHHHHHHhcCccCCcceeeeccCCHhhhcCCCCCCCCccccCCCCCEEEEEEEecCCCCCCCHHHHHH
Confidence 344455667888899999988754442 345555554 22333332 268888888765544432 123
Q ss_pred hHHHHHHHHHHHHHh-cC-CcceEEEeccCcce-----EEEEEEcCCceEEEEee--cCc--------------------
Q 022734 86 VKQSLLGDLLRALRQ-KG-GYRRLQFVAHARVP-----ILKFETIHQNISCDISI--DNL-------------------- 136 (293)
Q Consensus 86 ~~~~~l~~l~~~L~~-~~-~~~~v~~I~~ArVP-----IIk~~~~~~gi~vDIs~--~n~-------------------- 136 (293)
-+..++-+|++.|++ .+ ....--.+..+-.| -+-+.. .+|.-+.+.+ ...
T Consensus 577 ~K~Af~lkiae~L~~~~~~~~~~~v~~~~~~~~~~~~~~ldV~~-~~G~~FRl~I~~~rE~~Ll~~~~~~~~~~~k~~~~ 655 (972)
T PF03813_consen 577 TKTAFLLKIAEELEKQYGDGIKARVGLDNSLSPIANQAFLDVLY-PEGYVFRLRIYHDREETLLKRQLKTEDGQLKQEAT 655 (972)
T ss_pred HHHHHHHHHHHHHHHhhCCcceeeecccccccceeccceEEEEe-cCccEEEEEEecchhHHHHHHhhcccCcccchhhh
Confidence 355678889999983 33 11100001111111 111122 1344443332 111
Q ss_pred -----------hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 022734 137 -----------CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 137 -----------~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
.....+..|+.....+|.+.+-++++|+|+..+-| .+.++.=++-|||++.+...
T Consensus 656 ~~~~~~~~~~~~~p~h~~~i~~l~~~~p~fs~tvRL~KrW~~shlL----s~~i~~E~vELlva~vfl~~ 721 (972)
T PF03813_consen 656 EALASLERRFIHLPKHTSAIHGLHTRFPSFSPTVRLAKRWLSSHLL----SGHISEEAVELLVASVFLSP 721 (972)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhCCchhHHHHHHHHHHHhccC----cccCCHHHHHHHHHHHhcCC
Confidence 01223456777788899999999999999999977 46889999999999877654
No 32
>COG2413 Predicted nucleotidyltransferase [General function prediction only]
Probab=87.74 E-value=0.96 Score=38.90 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 26 ETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 26 ~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
.+|+++...++.+.+. +..-..+||.+-|=..|+||+|++|..+-
T Consensus 21 ekRe~A~~i~e~l~~f-----~ie~~v~gSvarGDV~p~SDvDV~I~~~v 65 (228)
T COG2413 21 EKREKARKIMEGLSDF-----GIEAVVYGSVARGDVRPGSDVDVAIPEPV 65 (228)
T ss_pred HHHHHHHHHHHHHHHh-----cchhEEEeeeeccCcCCCCCceEEEecCC
Confidence 3566666655555542 34668899999998889999999998754
No 33
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61 from EC). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.; GO: 0016779 nucleotidyltransferase activity
Probab=87.28 E-value=2.8 Score=36.63 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhcCCCCEEEeecCcc----cCCC--CCCCCcceeeecCC
Q 022734 31 VISDLREVVESVESLRGATVEPFGSFV----SNLF--SRWGDLDISIELSN 75 (293)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~~v~~fGS~~----tgl~--~~~SDiDl~l~~~~ 75 (293)
.+..++..... .+...-+|||.. ||+- .++||||+.+..+.
T Consensus 104 ~l~~l~~~~~~----~~~~~gv~GS~g~qlaTGl~~l~~~SDLDLli~~~~ 150 (213)
T PF10620_consen 104 ALQALRALLDA----LGLRWGVYGSLGFQLATGLPYLHADSDLDLLIRPPS 150 (213)
T ss_pred HHHHHHHHHHH----cCCCEEEehhHHHHHHhCccccCCCCCceEEEeCCC
Confidence 45555555532 488999999984 5653 47899999998764
No 34
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=86.44 E-value=7.6 Score=41.05 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=84.7
Q ss_pred CCCEEE-eecCcccCCCC-CCCCcceeeecCCCCccc---ccchh--hHHHHHHHHHHHHHhcCCcceEEEec---cCcc
Q 022734 46 RGATVE-PFGSFVSNLFS-RWGDLDISIELSNGSCIS---SAGKK--VKQSLLGDLLRALRQKGGYRRLQFVA---HARV 115 (293)
Q Consensus 46 ~~~~v~-~fGS~~tgl~~-~~SDiDl~l~~~~~~~~~---s~~k~--~~~~~l~~l~~~L~~~~~~~~v~~I~---~ArV 115 (293)
|..++. +-||+.+|... |++-+|+.+..|....-. -+.|. .+.-.+..++..|.....+...+... .-+-
T Consensus 146 ~p~~v~~vv~sal~~~~~~P~i~vDvll~mP~e~~~~kd~ln~Ryf~kra~yla~~~~hl~e~l~~~~~~f~~~n~d~~~ 225 (1121)
T KOG2054|consen 146 PPAQVTKVVGSALLGTCLRPDISVDVLLTMPREILQQKDGLNQRYFRKRALYLAYLAHHLLEDLLFGSLEFSYTNGDHLK 225 (1121)
T ss_pred CccccceeeeecccCcccCCcchhhhhhhhhHHhhcCcccccccccchHHHHHHHHHHHHHhccccceeeecccCCcccc
Confidence 445555 66888777754 779999999988643100 01111 12345666666666655555444332 2356
Q ss_pred eEEEEEEcCCc------eEEEEee----------------cC-----------chhhhhhHHH-----HHH-------hc
Q 022734 116 PILKFETIHQN------ISCDISI----------------DN-----------LCGQIKSKFL-----FWI-------SQ 150 (293)
Q Consensus 116 PIIk~~~~~~g------i~vDIs~----------------~n-----------~~g~~~t~ll-----~~~-------~~ 150 (293)
||+.....+.+ -..|.-. |+ ....+|+..+ ..| .+
T Consensus 226 pil~i~~~~~~~~~~~~~~~~~li~~~~~~f~~~kllp~~~~ir~~~e~~e~ppTP~yN~svL~~~~le~~~q~L~K~~s 305 (1121)
T KOG2054|consen 226 PILLIRPRGKDERLVTVRPPDFLIPCRLLPFKNNKLLPWYNGIRPAGEGSEEPPTPRYNTSVLEDQVLEEYLQLLSKTLS 305 (1121)
T ss_pred chhhccccCCccccccccCccccccccccccccccccchhcccCccccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHh
Confidence 77766543111 0011100 00 1122333222 122 23
Q ss_pred cCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 022734 151 IDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 151 ~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
..+.++.-+.++|.|+++|.... ..|||+.+-++.++++-+-+.
T Consensus 306 ~~~~f~da~~Llk~WlrqRs~~~-~~~gfg~f~~s~lvv~L~s~~ 349 (1121)
T KOG2054|consen 306 SAKGFKDALALLKVWLRQRSLDI-GQGGFGGFLLSALVVYLVSTR 349 (1121)
T ss_pred hhhhHHHHHHHHHHHHHhhhhhc-ccCcchHHHHHHHHHHHHhcC
Confidence 45779999999999999995533 468999999999988655553
No 35
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
Probab=86.40 E-value=0.74 Score=40.95 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 28 RMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 28 R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
|..+.+.++++-++- +..=.-....||.+.|+..|+||.|+..+.-.
T Consensus 2 ~~~i~~~l~~ie~~~-~~~il~~~~sGS~a~G~~s~dSD~D~r~vy~~ 48 (247)
T PF10127_consen 2 RETIQEKLNEIEKEH-NVKILYACESGSRAYGFASPDSDYDVRGVYIP 48 (247)
T ss_pred chHHHHHHHHHHHhc-CCcEEEEecccccccCCCCCCcCcccchhccC
Confidence 345666667666652 11223457789999999999999999776443
No 36
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=85.32 E-value=3.6 Score=35.79 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhhcCCCCEEEeecCcc----cCC--CCCCCCcceeeecCC
Q 022734 32 ISDLREVVESVESLRGATVEPFGSFV----SNL--FSRWGDLDISIELSN 75 (293)
Q Consensus 32 ~~~l~~~l~~~~~~~~~~v~~fGS~~----tgl--~~~~SDiDl~l~~~~ 75 (293)
++.+...... .+...-+|||.. ||+ ..++||||+.+..+.
T Consensus 98 l~~l~~~~~~----~~~~wgv~GS~g~qlaTGl~~l~~~SDLDLlir~~~ 143 (207)
T PRK01293 98 LQALAALLDA----LGLAWGVTGSAGFELATGIPVLHADSDLDLLIRAPQ 143 (207)
T ss_pred HHHHHHHHHh----CCCceeeehhHHHHHhhCCccccCCCCccEeecCCC
Confidence 4444444443 378889999985 555 247899999997754
No 37
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown]
Probab=85.31 E-value=29 Score=36.94 Aligned_cols=165 Identities=19% Similarity=0.225 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCC--CEEEeecCcccCCC--CC---------CC------CcceeeecCCCCccccc---ch
Q 022734 27 TRMKVISDLREVVESVESLRG--ATVEPFGSFVSNLF--SR---------WG------DLDISIELSNGSCISSA---GK 84 (293)
Q Consensus 27 ~R~~~~~~l~~~l~~~~~~~~--~~v~~fGS~~tgl~--~~---------~S------DiDl~l~~~~~~~~~s~---~k 84 (293)
.-.+..+++.+.+..+.+.|= ..|.+-||+--+.. -| .| =+++++.......++.. -+
T Consensus 645 ~v~kaYddLsk~L~gL~gLPLsIssV~g~~~~lRyts~~pp~~~~~~~~~es~~~q~~i~~VviqlE~SgKWP~d~eai~ 724 (1121)
T KOG2054|consen 645 AVVKAYDDLSKVLRGLKGLPLSISSVLGASSALRYTSVFPPSVAVAFSFYESSRLQSSIMTVVIQLEGSGKWPDDLEAIR 724 (1121)
T ss_pred HHHHHHHHHHHHHhcccCCCceeeeeccccchhcccccCCCCCCcccccccchhhhhhheEEEEEeccCCCCCchHHHHH
Confidence 566777788888877644442 45666666543333 22 12 23566666543333211 12
Q ss_pred hhHHHHHHHHHH-HHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCc---------------------hh----
Q 022734 85 KVKQSLLGDLLR-ALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNL---------------------CG---- 138 (293)
Q Consensus 85 ~~~~~~l~~l~~-~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~---------------------~g---- 138 (293)
+-+..++-+|++ .+++..+...+-...+ .+-+ ..|+.+-|-+-|. .+
T Consensus 725 r~ksAFlLKIaE~~lr~q~gl~~~~t~d~----~~vl---k~Gy~Frirv~~dRei~llk~v~~~~~s~~~~~~a~~~~~ 797 (1121)
T KOG2054|consen 725 RLKSAFLLKIAERNLRAQHGLTCVATADH----LDVL---KSGYVFRIRVLNDREIILLKDVQSERGSTKLRDEAASLSL 797 (1121)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcccCccc----eeee---cCccEEEEEEecchhHHHHHHHhhhccccccchhHHHHHH
Confidence 234567778888 4776433322221111 1111 1344444433211 01
Q ss_pred -------hhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCc
Q 022734 139 -------QIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPP 202 (293)
Q Consensus 139 -------~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~ilP~ 202 (293)
.+.|.-++...+.++.+-+.+++.|+|...+=|. |++.--++-|+|++-+++..|...|.
T Consensus 798 e~~~~~~p~ht~aL~~l~qsh~~ys~vvrLaKrWl~shLL~----~h~~De~iELLva~lf~~p~p~~~ps 864 (1121)
T KOG2054|consen 798 EKKFIILPLHTLALQSLSQSHPFYSSVVRLAKRWLGSHLLS----GHHLDEAIELLVAALFLKPGPLVPPS 864 (1121)
T ss_pred HHHHhhhHHHHHHHHHHhhcccchhHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHhcCccCCCCCC
Confidence 1234456677788899999999999999988774 46668999999999998876656664
No 38
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins. Escherichia coli GlnD and -E participate in the Glutamine synthetase (GS)/Glutamate synthase (GOGAT) pathway for the assimilation of ammonium nitrogen. In nitrogen sufficiency, GlnE adenylates GS, reducing GS activity; when nitrogen is limiting, GlnE deadenylates GS-AMP, restoring GS activity. When nitrogen is limiting, GlnD uridylylates the nitrogen regulatory protein PII to PII-UTP, and in nitrogen sufficiency, it removes the modifying groups. The activity of Escherichia coli GlnE is modulated by PII-proteins. PII-UMP promotes GlnE deadenylation activity, and PII promotes GlnE adenylation activity. Escherichia coli GlnE has two separate NT domains. The N-terminal NT domain catalyzes the deadenylylation of GS, and the C-terminal NT domain the adenylylation reaction. The majority of proteins in this family conta
Probab=84.13 E-value=15 Score=30.50 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=27.0
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
+.-+..+||...+=..+.||+|+.+..++.
T Consensus 55 ~~~~la~Gs~GR~E~~~~SD~D~~~v~~~~ 84 (172)
T cd05401 55 PFALLALGSYGRGELNPSSDQDLLLLYDDD 84 (172)
T ss_pred cEEEEEeCCcccCCcCCCcCcceEEEeCCC
Confidence 468999999999999999999999998754
No 39
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=83.36 E-value=6.9 Score=36.09 Aligned_cols=60 Identities=25% Similarity=0.237 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHh
Q 022734 31 VISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQ 100 (293)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~ 100 (293)
+.+.+++.+... .|++.+.+-||+.-| ...+.|||+.+.-|.... ....++..+...+.+
T Consensus 157 i~~~V~~av~~~--~p~~~vt~~GsfRRG-k~~ggDvD~LithP~~~s-------~~~~~~~~l~~~le~ 216 (353)
T KOG2534|consen 157 IQQTVQEAVWAF--DPEAFVTVTGSFRRG-KKMGGDVDFLITHPGSTS-------TEAKLLQLLMILLEK 216 (353)
T ss_pred HHHHHHHHHhhc--CCCcEEEEeccccCC-cccCCCeeEEEeCCCCCc-------hhhhHHHHHHHHHHh
Confidence 344456666654 699999999999976 445679999998776421 134455666555554
No 40
>PHA02603 nrdC.11 hypothetical protein; Provisional
Probab=78.03 E-value=1.3 Score=41.19 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEeecCcccCCCCCCCCccee
Q 022734 49 TVEPFGSFVSNLFSRWGDLDIS 70 (293)
Q Consensus 49 ~v~~fGS~~tgl~~~~SDiDl~ 70 (293)
-...+||.+.|+.+|+||+|+-
T Consensus 5 ~~~~~GShaYG~~tp~SD~D~r 26 (330)
T PHA02603 5 MKGLFGSHLYGTSTPESDVDYK 26 (330)
T ss_pred EEEecccceeCCCCCCcccccc
Confidence 3567999999999999999974
No 41
>COG3541 Predicted nucleotidyltransferase [General function prediction only]
Probab=77.32 E-value=1.3 Score=39.34 Aligned_cols=21 Identities=24% Similarity=0.080 Sum_probs=18.2
Q ss_pred ecCcccCCCCCCCCcceeeec
Q 022734 53 FGSFVSNLFSRWGDLDISIEL 73 (293)
Q Consensus 53 fGS~~tgl~~~~SDiDl~l~~ 73 (293)
=||.+-|+..|+||+|+--+.
T Consensus 16 sGS~~yGf~spdSDyDvR~V~ 36 (248)
T COG3541 16 SGSHLYGFPSPDSDYDVRGVH 36 (248)
T ss_pred ccccccCCCCCCCccceeeEE
Confidence 399999999999999997653
No 42
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=77.00 E-value=13 Score=31.50 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=44.6
Q ss_pred CCCEEEeecCccc----CCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcc-eEEEeccCcceEEEE
Q 022734 46 RGATVEPFGSFVS----NLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYR-RLQFVAHARVPILKF 120 (293)
Q Consensus 46 ~~~~v~~fGS~~t----gl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~-~v~~I~~ArVPIIk~ 120 (293)
.++++.+.|+++. |.--.+.|||+.+..++.. ...+.++.++.. .++. ..... ...-.++++
T Consensus 15 ~gv~~~ivGG~av~l~~g~~r~T~DIDlfi~~~~~~--------~~~~~~~~~a~~----~g~~~~~~~~-~~~~~~~~~ 81 (181)
T PF09970_consen 15 RGVEYVIVGGAAVNLAYGRRRTTKDIDLFIENPSPN--------LEADALREVAEE----NGWDLGWTDF-GTPRYVVKV 81 (181)
T ss_pred cCCeEEEECHHHHHHHhCCCCCCCCeEEEeCCCchH--------HHHHHHHHHHHH----cCCCcCcccc-CCCceEEEe
Confidence 5789999999975 4444567999998765321 122345555432 2221 11111 122223344
Q ss_pred EEcCCceEEEEeecCchhhhh
Q 022734 121 ETIHQNISCDISIDNLCGQIK 141 (293)
Q Consensus 121 ~~~~~gi~vDIs~~n~~g~~~ 141 (293)
. ..++.+|+ +.|..|+.-
T Consensus 82 ~--~~~v~IDl-~~ni~~~~v 99 (181)
T PF09970_consen 82 G--GEDVRIDL-LENIGDFYV 99 (181)
T ss_pred C--CCCeEEEc-hhccCCccc
Confidence 4 47899999 666666644
No 43
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=76.16 E-value=6 Score=40.69 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CCCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 26 ETRMKVISDLREVVESVESL-RGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 26 ~~R~~~~~~l~~~l~~~~~~-~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
+.|+.+.+.-..++++. .+ +++.+...|++.-|--.|.||||+.+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~~~aLvAvGGYGR~EL~P~SDIDLLiL~~~ 55 (693)
T PRK00227 6 QLREDAEASALALLGSL-QLPPGTALAATGSLARREMTPYSDLDLILLHPP 55 (693)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCCeEEEEeccccccCcCCCcCceEEEEeCC
Confidence 46777888888888875 35 457899999999999999999999999874
No 44
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=75.84 E-value=40 Score=27.09 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=26.8
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
...+..+||..-+=.++.||+|..|+..+
T Consensus 49 ~~a~lalGS~GR~E~~~~sDqD~alv~~d 77 (138)
T PF03445_consen 49 PFAWLALGSYGRREQTLYSDQDNALVFED 77 (138)
T ss_pred CEEEEEECcccccCCCcCccccceeeecC
Confidence 46789999999999999999999999887
No 45
>PHA02996 poly(A) polymerase large subunit; Provisional
Probab=75.36 E-value=11 Score=35.81 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCC---CCcceeeecCCCCcc
Q 022734 6 VLEPILKDILGMLNPLREDWETRM---KVISDLREVVESVESLRGATVEPFGSFVSNLFSRW---GDLDISIELSNGSCI 79 (293)
Q Consensus 6 ~L~~~l~~~~~~~~pt~~e~~~R~---~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~---SDiDl~l~~~~~~~~ 79 (293)
.|..++.+-++...|++ +...|. .++..+.+++++...-.+-...+|||+..-+-.|. +|||+.=.
T Consensus 124 ~la~~~L~synv~~~~~-kvmgrh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhllNp~I~YgDIDilqT------- 195 (467)
T PHA02996 124 KLARDALNSYNVAVISE-KVMGRHNVSDLVGNVNKLMEEYLRRHNKSCICYGSYSLHLLNPEIEYGDIDILQT------- 195 (467)
T ss_pred HHHHHHHHhccccCCCc-cccccccccHHHHHHHHHHHHHHHhcCCceEEeeceeeeecCCccccCCcceeee-------
Confidence 34455555566666664 322222 34444444444432224667789999998776665 89999643
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEE----EEEcCCceEEE
Q 022734 80 SSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILK----FETIHQNISCD 130 (293)
Q Consensus 80 ~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk----~~~~~~gi~vD 130 (293)
..+.+|-.++-.+.---+. ++-.. +||-+| +.++..+.-+|
T Consensus 196 ------Nar~fLInlaflI~fitG~-~v~Ll---kVPyLknyivlkdee~~hIiD 240 (467)
T PHA02996 196 ------NSRTFLINLAFLIKFITGR-NVVLL---KVPYLKNYMVLKDEEDNHIID 240 (467)
T ss_pred ------ccHHHHHHHHHHHhhhcCc-eEEEE---EcccccceEEEEecCCCEEEE
Confidence 2345777776655432222 33333 899775 45554455555
No 46
>PRK08609 hypothetical protein; Provisional
Probab=74.97 E-value=24 Score=35.56 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 32 ISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 32 ~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
.+.|.+.++.+ -+..++.+-||+.-|-.+ ..|||+.+..++
T Consensus 162 a~~i~~~l~~~--~~~~~v~~~GS~RR~~et-~gDiDili~~~~ 202 (570)
T PRK08609 162 AQEIEEYLATI--DEIIRFSRAGSLRRARET-VKDLDFIIATDE 202 (570)
T ss_pred HHHHHHHHHhC--CCccEEEeccchhccccc-cCCeeEEEecCC
Confidence 34445555553 356899999999876543 359999997654
No 47
>PF03296 Pox_polyA_pol: Poxvirus poly(A) polymerase nucleotidyltransferase domain; InterPro: IPR024231 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This entry represents the nucleotidyltransferase domain of the catalytic subunit [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=72.91 E-value=29 Score=28.09 Aligned_cols=98 Identities=20% Similarity=0.297 Sum_probs=44.9
Q ss_pred HHHcCCCHHHHHHHHHH---HHHHHHHHHhhhcCCCCEEEeecCcccCCCCCC---CCcceeeecCCCCcccccchhhHH
Q 022734 15 LGMLNPLREDWETRMKV---ISDLREVVESVESLRGATVEPFGSFVSNLFSRW---GDLDISIELSNGSCISSAGKKVKQ 88 (293)
Q Consensus 15 ~~~~~pt~~e~~~R~~~---~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~---SDiDl~l~~~~~~~~~s~~k~~~~ 88 (293)
+.-..|+. +...|..+ +..+.+++++...-.+-+..+|||+..-+-.|+ +|||+.=. ..+
T Consensus 16 ~~v~~~~~-~~~grh~vS~lV~~V~klmeEyLrrhNk~CicYGSyslhllN~~I~YgDIDilqT-------------Nar 81 (149)
T PF03296_consen 16 YNVANPSG-KVMGRHNVSDLVENVNKLMEEYLRRHNKSCICYGSYSLHLLNPNIKYGDIDILQT-------------NAR 81 (149)
T ss_dssp H--S--------------THHHHHHHHHHHHHHH-TTTEEEESHHHHHTTSTTS--SS-EEEES-------------THH
T ss_pred hcccccCc-cccccccCcHHHHHHHHHHHHHHHhhCCCeEEeeeeeEEecCCCcccCcchhhhc-------------ccH
Confidence 33344444 44555433 333333333322224566788999987766554 89999632 245
Q ss_pred HHHHHHHHHHHhcCCcceEEEeccCcceEE----EEEEcCCceEEE
Q 022734 89 SLLGDLLRALRQKGGYRRLQFVAHARVPIL----KFETIHQNISCD 130 (293)
Q Consensus 89 ~~l~~l~~~L~~~~~~~~v~~I~~ArVPII----k~~~~~~gi~vD 130 (293)
.+|-.++-.+.---+. ++... +||.+ .+++...+.-+|
T Consensus 82 ~flI~laflI~fitG~-~~~L~---kvPyLknyivlkd~~~~hIiD 123 (149)
T PF03296_consen 82 TFLINLAFLIKFITGR-DVVLL---KVPYLKNYIVLKDEEDNHIID 123 (149)
T ss_dssp HHHHHHHHHHHHHCSS--EEEE---EETTSTTEEEEEETTS-EEEE
T ss_pred HHHHHHHHHHhhhcCc-ceEEE---EchhhhceEEEEecCCCEEEE
Confidence 6777777666543332 33322 77854 456655555555
No 48
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=67.25 E-value=1.1e+02 Score=28.50 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEE
Q 022734 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQF 109 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~ 109 (293)
.+...+...+.++ -+-.++..-||..-+-. -.+|||+.+...++. . +.+.+.+-+....+..
T Consensus 165 ~ia~ei~~yl~~~--~~~~~~~~aGs~RR~re-tv~DiD~~~s~~~~~-----------~----v~~~~~~~~~~~~vi~ 226 (326)
T COG1796 165 PIAQEIEGYLEEL--TPIIQASIAGSLRRGRE-TVGDIDILISTSHPE-----------S----VLEELLEMPNVQEVIA 226 (326)
T ss_pred HHHHHHHHHHHhc--cchheeeeccchhhccc-cccceeeEeccCCcH-----------H----HHHHHhcCCCcceeee
Confidence 3444555566554 23467778888875533 246999999865421 1 2333333444555554
Q ss_pred eccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCC
Q 022734 110 VAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTG 177 (293)
Q Consensus 110 I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G 177 (293)
-...++-.+...+ .|++||+-+-.....-++ ++.+--+. .--+-|+..|+.+|..-+..|
T Consensus 227 ~G~~k~s~~~~~~--~~~svD~r~v~~e~fGaa-l~~fTGSk-----ehNi~iR~lA~~kg~klseyG 286 (326)
T COG1796 227 KGETKVSMLLILD--EGTSVDFRVVPPEAFGAA-LQHFTGSK-----EHNIKIRQLAKAKGEKLSEYG 286 (326)
T ss_pred cCCceeeEEEEec--CCCeeEEEEcCHHHhhhh-hhhcccch-----hhhHHHHHHHHHhCcchhhcc
Confidence 4555666555555 799999977554433332 33222222 223567778888887654443
No 49
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=66.20 E-value=12 Score=33.83 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=25.6
Q ss_pred CCCCEEEeecCcccCCCCCCCCcceeeec
Q 022734 45 LRGATVEPFGSFVSNLFSRWGDLDISIEL 73 (293)
Q Consensus 45 ~~~~~v~~fGS~~tgl~~~~SDiDl~l~~ 73 (293)
.|--.+=+-||-..|+...+||||+++..
T Consensus 119 Vp~~~mGVTGSiL~gl~~~nSDIDfVVYG 147 (315)
T COG1665 119 VPVNSMGVTGSILLGLYDENSDIDFVVYG 147 (315)
T ss_pred CchhhccccccccccccCCCCCceEEEEc
Confidence 56667777899999999999999999987
No 50
>PRK05007 PII uridylyl-transferase; Provisional
Probab=65.39 E-value=51 Score=35.10 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=27.0
Q ss_pred CCCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 46 RGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 46 ~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
+++.+...|++.-|--.|.||||+.++.++
T Consensus 79 ~~~alvAvGgyGR~EL~p~SDiDll~l~~~ 108 (884)
T PRK05007 79 PDLALVAVGGYGRGELHPLSDIDLLILSRK 108 (884)
T ss_pred CceEEEecCCCCCcccCCcccceEEEEeCC
Confidence 357899999999999999999999999874
No 51
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.19 E-value=44 Score=34.97 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCC---CEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 25 WETRMKVISDLREVVESVESLRG---ATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 25 ~~~R~~~~~~l~~~l~~~~~~~~---~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
.+.|...++.+-.-+-+..++++ +-+...|.+.-|--.|.||||+.+..|..
T Consensus 41 ~~~~~~~~d~~L~~lw~~~g~~~~~~~aLvAVGGyGRgEL~P~SDiDlL~L~p~~ 95 (867)
T COG2844 41 IELRTDLVDQLLIRLWQEIGFADASGLALVAVGGYGRGELHPLSDIDLLLLSPQK 95 (867)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccceEEEEeccccccccCCCccceEEEecCCC
Confidence 44555555544333322223444 78999999999999999999999998864
No 52
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=61.53 E-value=59 Score=34.67 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=26.6
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
++.+...|++.-|--.|.||||+.++.++.
T Consensus 78 ~~alvAvGgyGR~EL~p~SDiDll~l~~~~ 107 (895)
T PRK00275 78 DIALVAVGGYGRGELHPYSDIDLLILLDSA 107 (895)
T ss_pred CEEEEEcCCccccCcCCCCCceEEEEecCC
Confidence 468999999999999999999999998753
No 53
>PRK04374 PII uridylyl-transferase; Provisional
Probab=59.99 E-value=65 Score=34.23 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=26.6
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
++.+...|++.-|--.|.||||+.++.++.
T Consensus 72 ~~alvAvGgYGR~EL~p~SDIDLliL~~~~ 101 (869)
T PRK04374 72 GLSLHAVGGYGRGELFPRSDVDLLVLGETA 101 (869)
T ss_pred CEEEEEcCCccccccCCcccceEEEEecCC
Confidence 368999999999999999999999998743
No 54
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=57.47 E-value=87 Score=33.22 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=26.6
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
++.+...|++.-|---|.||||+.+..++.
T Consensus 56 ~iaLvAvGGYGR~eL~P~SDIDlliL~~~~ 85 (854)
T PRK01759 56 DLALIAVGGYGRREMFPLSDLDILILTEQP 85 (854)
T ss_pred CeEEEEeCCcccccCCCcccceEEEEeCCC
Confidence 368999999999999999999999998743
No 55
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=54.95 E-value=96 Score=32.80 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=27.2
Q ss_pred CCCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 46 RGATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 46 ~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
.++-+...||+.-|=-.|.||+|+.++.++.
T Consensus 42 ~~~aliA~GgyGR~El~p~SDiDll~l~~~~ 72 (850)
T TIGR01693 42 SGIALVAVGGYGRGELAPYSDIDLLFLHDGK 72 (850)
T ss_pred CCeEEEEeCCccccCcCCCCCCeEEEEeCCC
Confidence 3578999999999999999999999998743
No 56
>PRK03059 PII uridylyl-transferase; Provisional
Probab=53.85 E-value=91 Score=33.08 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=26.3
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
++.+...|++.-|--.|.||||+.++.++
T Consensus 61 ~~alvAvGgyGR~EL~p~SDiDll~l~~~ 89 (856)
T PRK03059 61 GAALVAVGGYGRGELFPYSDVDLLVLLPD 89 (856)
T ss_pred CeEEEEcCCCCCcccCCCCCCEEEEEecC
Confidence 56899999999999999999999999864
No 57
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=49.91 E-value=44 Score=31.15 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
.+.+.|.+.++.+ .|..++.+-||+.-|-.+ .+|||+++..++.
T Consensus 149 ~i~~~i~~~l~~~--~~~~~v~i~GSyRRgket-~gDIDili~~~~~ 192 (334)
T smart00483 149 AVEYIVKRAVRKI--LPDAIVTLTGSFRRGKET-GHDVDFLITSPHP 192 (334)
T ss_pred HHHHHHHHHHHhh--CCCcEEEEecccccCCCc-CCCeeEEEecCCc
Confidence 4445555666664 478999999999976543 3599999987653
No 58
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=45.10 E-value=54 Score=28.44 Aligned_cols=27 Identities=30% Similarity=0.107 Sum_probs=23.4
Q ss_pred EEEeecCcccCCCCCCCCcceeeecCC
Q 022734 49 TVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 49 ~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
-++.-||..|=--.+.||+|+=|+.+.
T Consensus 99 GlY~MGS~gSi~Qs~~SDlDiWvCh~~ 125 (204)
T PF12633_consen 99 GLYSMGSTGSIGQSSSSDLDIWVCHDS 125 (204)
T ss_pred EEEecCCCccccCCCCCCCeEEEEcCC
Confidence 478889999888899999999998764
No 59
>PF11774 Lsr2: Lsr2 ; InterPro: IPR024412 This entry represents Lsr2, which is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homologue of the H-NS-like proteins []. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression [, ].; PDB: 4E1R_B 4E1P_B 2KNG_A.
Probab=44.17 E-value=43 Score=26.02 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=38.9
Q ss_pred eEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhcc------------------CchhHHHHHHHHHHHHHCCCCCCCCC
Q 022734 116 PILKFETIHQNISCDISIDNLCGQIKSKFLFWISQI------------------DGRFRDMVLLVKEWAKAHDINNPKTG 177 (293)
Q Consensus 116 PIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~------------------~~~~r~L~~~iK~wak~~~l~~~~~G 177 (293)
-.|.|.-.+...++|+|-.|..-++. .|.-|+.. -..-++-..-|+.||+..|+.-+.+|
T Consensus 20 etv~F~ldG~~YeIDLs~~na~~lr~--~l~~yi~~arr~~g~~~~~~~~~~~~~~~~~~~~~~IR~WA~~nG~~Vs~RG 97 (110)
T PF11774_consen 20 ETVRFGLDGVDYEIDLSAENAAKLRD--ALAPYIAAARRVGGRARRRRRRARSAAAAPREDTAAIREWARENGYEVSDRG 97 (110)
T ss_dssp EEEEEEETTEEEEEEE-HHHHHHHHH--HHHHHHHHSEEE---------SSGGG---SSTHHHHHHHHHHHTT----SSS
T ss_pred eEEEEEECCeEEEEECCHHHHHHHHH--HHHHHHHHheEccccccccccCccccCCCCccchHHHHHHHHHcCCcCCCCC
Confidence 46788876677888998887665555 24444321 12346678899999999999988899
Q ss_pred CCChH
Q 022734 178 TFNSY 182 (293)
Q Consensus 178 ~lsSy 182 (293)
-++.=
T Consensus 98 RIp~~ 102 (110)
T PF11774_consen 98 RIPAE 102 (110)
T ss_dssp ---HH
T ss_pred cCCHH
Confidence 88753
No 60
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=43.64 E-value=1.5e+02 Score=23.79 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=41.1
Q ss_pred CCEEEeecCcccCC--CCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcC
Q 022734 47 GATVEPFGSFVSNL--FSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH 124 (293)
Q Consensus 47 ~~~v~~fGS~~tgl--~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~ 124 (293)
+.++++.|-++-.+ +.+..|+|+++..+. ...+.++.+.. ...-+. ...+-+++++..
T Consensus 16 g~~~ylVGG~VRD~Llg~~~~DiDi~v~~~~------------~~~~~~l~~~~----~~~~v~--~~~~f~t~~v~~-- 75 (139)
T cd05398 16 GYEAYLVGGAVRDLLLGRPPKDIDIATDADG------------PEFAEALFKKI----GGRVVG--LGEEFGTATVVI-- 75 (139)
T ss_pred CceEEEECChHHHHHcCCCCCCceEEEeCCC------------HHHHHHHHHhc----CCcEEe--cCCcccEEEEEE--
Confidence 78999999887644 446679999986531 12233333221 111111 134666777776
Q ss_pred CceEEEEeecC
Q 022734 125 QNISCDISIDN 135 (293)
Q Consensus 125 ~gi~vDIs~~n 135 (293)
.|..+||+.-.
T Consensus 76 ~~~~~di~~~R 86 (139)
T cd05398 76 NGLTIDVATLR 86 (139)
T ss_pred CCEEEEEcccc
Confidence 48889987644
No 61
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=43.41 E-value=61 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=17.1
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCCCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSNGS 77 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~ 77 (293)
+.-|...|-...+=-...||||++.+.+...
T Consensus 127 ~~~ViamGKlGg~ELny~SDiDLifvy~~~~ 157 (247)
T PF03710_consen 127 GFAVIAMGKLGGRELNYSSDIDLIFVYDPDG 157 (247)
T ss_dssp SEEEEE-HHHHTT---TT--EEEEEEE---T
T ss_pred CeEEEEeccccccccCCccCCceEEEecccc
Confidence 4567777877766677899999999988654
No 62
>PRK03381 PII uridylyl-transferase; Provisional
Probab=40.84 E-value=86 Score=32.84 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=26.2
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
.+.+...|++.-|--.|.||||+.++.++
T Consensus 57 ~~alvAvg~~gr~el~p~SD~Dll~l~~~ 85 (774)
T PRK03381 57 GVALVAVGGLGRRELLPYSDLDLVLLHDG 85 (774)
T ss_pred CeEEEEeCCcCCcCcCCCCCCeEEEEeCC
Confidence 36889999999999999999999999874
No 63
>PF04229 GrpB: GrpB protein; InterPro: IPR007344 This family of uncharacterised proteins is also known as GrpB.; PDB: 2NRK_A.
Probab=39.49 E-value=2e+02 Score=23.76 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=55.2
Q ss_pred CCEEEeecCccc-CCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEE----
Q 022734 47 GATVEPFGSFVS-NLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFE---- 121 (293)
Q Consensus 47 ~~~v~~fGS~~t-gl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~---- 121 (293)
-+.+.=+||++- |+.-+. .|||.+..++.... ..+...|.. .++... ..+..+|--.+.
T Consensus 32 ~~~IeHIGSTsVpgl~AKp-iIDI~v~V~~~~~~------------~~~~~~L~~-~Gy~~~--~~~~~~~~~~~f~k~~ 95 (167)
T PF04229_consen 32 ALRIEHIGSTSVPGLAAKP-IIDILVGVEDLEDL------------DAYIEALEA-LGYVYN--RGEPGIPGRRFFRKGD 95 (167)
T ss_dssp EEEEEEESGGGSTT--B-S--EEEEEEES-SGGG------------GGGHHHHHH-TT-EE----TTTTSTTEEEEEE--
T ss_pred hhEEEEeccceeCCcccCC-eeeEEeccCChHHH------------HHHHHHHHH-cCCEec--CCCCCCccceeeEccC
Confidence 458999999865 665554 78888877654311 111223332 233211 123333422221
Q ss_pred -EcCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHH
Q 022734 122 -TIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAK 167 (293)
Q Consensus 122 -~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak 167 (293)
+......+-|+..+.....+--.+|.|+..+|..+.-.--+|.=+.
T Consensus 96 ~~~~~~~hlhv~~~~~~~~~~~l~FRDyLr~~p~~~~~Y~~lK~~la 142 (167)
T PF04229_consen 96 EDGERTHHLHVCPAGSPEWRRHLLFRDYLRAHPELRREYEALKRELA 142 (167)
T ss_dssp -SSS--EEEEEEETT-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCCccEEEEEEeCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 2223345555555544566777789999999999999999998544
No 64
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=32.30 E-value=51 Score=33.32 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=39.9
Q ss_pred EEEEEEcCCceEEEE-eecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 022734 117 ILKFETIHQNISCDI-SIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 117 IIk~~~~~~gi~vDI-s~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
||||.+ +.++.|= ++|-..-+-++-=++.|.+.+.++. +.++|.|+++- |.-++||..+
T Consensus 103 Iirfy~--SW~d~~n~~in~iTEL~TSGtLr~Y~kk~~~vn--~kaik~W~RQI----------------LkGL~yLHs~ 162 (632)
T KOG0584|consen 103 IIRFYD--SWVDTDNKTINFITELFTSGTLREYRKKHRRVN--IKAIKSWCRQI----------------LKGLVYLHSQ 162 (632)
T ss_pred eeeeee--heecCCCceeeeeeecccCCcHHHHHHHhccCC--HHHHHHHHHHH----------------HHHhhhhhcC
Confidence 788876 4443332 2333333444445677766554433 24999999873 3447899999
Q ss_pred CCCCCC
Q 022734 196 VPAILP 201 (293)
Q Consensus 196 ~p~ilP 201 (293)
.|||+.
T Consensus 163 ~PPIIH 168 (632)
T KOG0584|consen 163 DPPIIH 168 (632)
T ss_pred CCCccc
Confidence 888774
No 65
>PRK05092 PII uridylyl-transferase; Provisional
Probab=30.16 E-value=95 Score=33.27 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=26.4
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
++.|...|++.-|=-.|.||||+.++.++.
T Consensus 105 ~~alvA~GgyGr~EL~p~SDiDLl~l~~~~ 134 (931)
T PRK05092 105 RLAVLAVGGYGRGELAPGSDIDLLFLLPYK 134 (931)
T ss_pred ceEEEEecCcCCcccCCCCCceEEEEeCCC
Confidence 367899999999999999999999998753
No 66
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=29.34 E-value=95 Score=25.62 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcc---eeee
Q 022734 34 DLREVVESVESLRGATVEPFGSFVSNLFSRWGDLD---ISIE 72 (293)
Q Consensus 34 ~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiD---l~l~ 72 (293)
.|++.|.......+.-+..||.+.+|++...++++ +++.
T Consensus 17 ~lq~~id~~~~~~d~Ill~YG~Cg~~~g~~~~~~~~~~~~~~ 58 (166)
T PF07796_consen 17 ELQEEIDKASKDYDGILLFYGLCGNGLGLIARRLPELGLVIP 58 (166)
T ss_pred HHHHHHHHhhccCCeEEEEEeCCCCccchhhhhccccceeEe
Confidence 44444444322346778899999999988888888 7764
No 67
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=24.77 E-value=4.3e+02 Score=22.68 Aligned_cols=38 Identities=24% Similarity=0.545 Sum_probs=21.1
Q ss_pred HHHHHHHhhhcCCCCEEEee-cCcccCCC----C-CCCCcceeee
Q 022734 34 DLREVVESVESLRGATVEPF-GSFVSNLF----S-RWGDLDISIE 72 (293)
Q Consensus 34 ~l~~~l~~~~~~~~~~v~~f-GS~~tgl~----~-~~SDiDl~l~ 72 (293)
.++++++.+ .-.++.+.++ |.....++ . +.+|||+.|.
T Consensus 59 ~~~~i~~~l-~~~gI~~~~lKG~~l~~~Y~~~~~R~~~DiDlLV~ 102 (249)
T PF14907_consen 59 ELQEILAAL-NANGIPVILLKGAALAQLYPDPGLRPMGDIDLLVP 102 (249)
T ss_pred HHHHHHHHH-HHcCCCEEEEchHHHHHhCCCCCCCCCCCeEEEEe
Confidence 444444443 1247777777 44433222 2 2379999986
No 68
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=24.22 E-value=1.5e+02 Score=32.14 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=25.4
Q ss_pred CEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 48 ATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 48 ~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
.-|..+|++..+=-.+.||+|++++...
T Consensus 724 ~avia~Gk~Gr~EL~~~SDlDl~fl~~~ 751 (1007)
T PRK14109 724 IAVIGMGRLGGRELGYGSDADVMFVHEP 751 (1007)
T ss_pred EEEEEeccccccccCCCCCCcEEEEeCC
Confidence 6799999999988999999999999874
No 69
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=23.30 E-value=1.9e+02 Score=22.32 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=27.6
Q ss_pred HHHHHHHhhhcCCCCEEEeecCcccCCCC---CCCCcceeeecC
Q 022734 34 DLREVVESVESLRGATVEPFGSFVSNLFS---RWGDLDISIELS 74 (293)
Q Consensus 34 ~l~~~l~~~~~~~~~~v~~fGS~~tgl~~---~~SDiDl~l~~~ 74 (293)
.+-+.+++. .|++.+..-|..++...- ...++|.++...
T Consensus 57 ~~~~~ik~~--~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GE 98 (127)
T cd02068 57 ELAKIAKEV--LPNVIVVVGGPHATFFPEEILEEPGVDFVVIGE 98 (127)
T ss_pred HHHHHHHHH--CCCCEEEECCcchhhCHHHHhcCCCCCEEEECC
Confidence 344456664 589999999998885533 356899888754
No 70
>PF04439 Adenyl_transf: Streptomycin adenylyltransferase; InterPro: IPR007530 Also known as aminoglycoside 6-adenylyltransferase (2.7.7 from EC), this protein confers resistance to aminoglycoside antibiotics.; PDB: 2PBE_A.
Probab=20.84 E-value=1.3e+02 Score=27.37 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhcCCCCE-EEeecCcccCCCCCC--CCcceeeecCC
Q 022734 29 MKVISDLREVVESVESLRGAT-VEPFGSFVSNLFSRW--GDLDISIELSN 75 (293)
Q Consensus 29 ~~~~~~l~~~l~~~~~~~~~~-v~~fGS~~tgl~~~~--SDiDl~l~~~~ 75 (293)
+++++.|-++.++ -+.++ |.+=||.++.-.-++ ||.|++....+
T Consensus 5 ~em~~~Il~~A~~---d~rIraV~l~GSR~n~~~~~D~fqDyDIv~~v~d 51 (282)
T PF04439_consen 5 QEMMDLILEFAKQ---DERIRAVILNGSRANPNAPKDEFQDYDIVYVVTD 51 (282)
T ss_dssp HHHHHHHHHHHHH----TTEEEEEE----------------EEEEEEES-
T ss_pred HHHHHHHHHHHhc---CCcEEEEEEecCCCCCCCCccccccccEEEEecc
Confidence 3555555555554 35665 677799998765544 89999999865
Done!