Query 022734
Match_columns 293
No_of_seqs 188 out of 1230
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pq1_A Poly(A) RNA polymerase; 100.0 8.6E-58 2.9E-62 434.4 23.6 260 3-279 130-408 (464)
2 4e8f_A Poly(A) RNA polymerase 100.0 6.2E-54 2.1E-58 405.6 21.1 255 3-287 40-300 (405)
3 3hj4_A Minor editosome-associa 100.0 9.3E-54 3.2E-58 396.8 19.0 268 1-290 1-278 (384)
4 3nyb_A Poly(A) RNA polymerase 100.0 3.7E-51 1.3E-55 376.7 22.2 225 4-283 18-242 (323)
5 4fh3_A Poly(A) RNA polymerase 100.0 2.7E-51 9.1E-56 381.8 20.9 251 6-286 15-271 (349)
6 2ikf_A RNA uridylyl transferas 100.0 3.3E-49 1.1E-53 368.2 20.3 251 5-284 26-286 (353)
7 2b4v_A RNA editing complex pro 100.0 1.5E-46 5E-51 359.3 20.7 242 3-283 16-375 (468)
8 1q79_A Poly(A) polymerase alph 100.0 1.5E-36 5.1E-41 293.0 20.1 211 6-282 37-292 (514)
9 2hhp_A Poly(A) polymerase; tem 100.0 2.2E-36 7.4E-41 292.8 20.7 212 6-283 24-280 (530)
10 1r89_A TRNA nucleotidyltransfe 99.4 4.6E-12 1.6E-16 119.4 18.5 167 7-191 3-182 (437)
11 1px5_A 2'-5'-oligoadenylate sy 99.2 5.4E-10 1.8E-14 103.4 17.3 183 10-195 10-243 (349)
12 4at7_A Interleukin enhancer-bi 98.4 6.8E-06 2.3E-10 74.9 16.2 181 4-195 24-230 (364)
13 1no5_A Hypothetical protein HI 98.1 1.9E-05 6.6E-10 60.9 9.0 42 32-75 14-55 (114)
14 1ylq_A Putative nucleotidyltra 97.8 1.6E-05 5.4E-10 59.5 3.9 43 31-75 3-46 (96)
15 1wot_A Putative minimal nucleo 97.6 4E-05 1.4E-09 57.5 4.3 30 46-75 24-53 (98)
16 2rff_A Putative nucleotidyltra 97.6 4.8E-05 1.6E-09 58.4 4.1 51 25-75 9-61 (111)
17 4ebj_A Aminoglycoside nucleoti 96.6 0.0011 3.8E-08 57.5 3.4 51 26-76 17-69 (272)
18 4at7_B NF90, interleukin enhan 96.4 0.035 1.2E-06 51.0 12.1 165 15-195 20-264 (383)
19 1kny_A Kntase, kanamycin nucle 96.2 0.0017 5.8E-08 56.9 2.3 45 30-76 14-60 (253)
20 2fmp_A DNA polymerase beta; nu 93.6 0.24 8.1E-06 45.0 8.5 130 30-172 157-292 (335)
21 2bcq_A DNA polymerase lambda; 93.0 0.37 1.3E-05 43.7 8.8 127 29-172 153-286 (335)
22 3jz0_A Lincosamide nucleotidyl 91.7 0.16 5.6E-06 45.1 4.6 49 24-75 20-69 (287)
23 2ihm_A POL MU, DNA polymerase 86.6 2.7 9.3E-05 38.3 8.9 65 30-105 161-225 (360)
24 3b0x_A DNA polymerase beta fam 83.3 7.1 0.00024 37.8 10.7 115 30-172 165-279 (575)
25 1jaj_A DNA polymerase beta-lik 82.3 1.2 4.2E-05 36.4 4.1 104 45-171 29-135 (174)
26 2pbe_A AAD6, aminoglycoside 6- 80.7 5.1 0.00017 35.4 7.9 43 30-75 8-53 (294)
27 1jms_A Terminal deoxynucleotid 74.5 8.9 0.0003 35.2 7.8 66 30-104 181-246 (381)
28 3er9_B Poly(A) polymerase cata 55.1 19 0.00064 33.1 5.6 107 7-130 137-253 (479)
29 2fcl_A Hypothetical protein TM 48.2 68 0.0023 25.5 7.6 44 28-72 15-61 (169)
30 2kng_A Protein LSR2; DNA-bindi 45.1 17 0.0006 23.6 2.8 25 159-183 15-39 (55)
31 1v4a_A Glutamate-ammonia-ligas 37.4 28 0.00097 32.4 4.2 29 47-75 154-182 (440)
32 3k7d_A Glutamate-ammonia-ligas 34.3 40 0.0014 32.0 4.7 30 47-76 234-263 (498)
33 2w9m_A Polymerase X; SAXS, DNA 23.0 4E+02 0.014 25.3 9.7 87 50-172 182-269 (578)
34 1sy9_B Cyclic-nucleotide-gated 22.4 68 0.0023 16.8 2.2 16 153-168 8-23 (26)
35 2c5k_T Syntaxin TLG1, T-snare 21.5 28 0.00095 25.2 0.8 37 6-42 47-87 (95)
No 1
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=100.00 E-value=8.6e-58 Score=434.40 Aligned_cols=260 Identities=22% Similarity=0.340 Sum_probs=203.8
Q ss_pred CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccc-
Q 022734 3 SYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISS- 81 (293)
Q Consensus 3 ~~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s- 81 (293)
....|+.||.+|+++++||++|.+.|..++++|++++++. ||+++|.+|||++||+++|+||||+|+..++....+.
T Consensus 130 ~a~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~--fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~ 207 (464)
T 3pq1_A 130 YAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAY--FPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAH 207 (464)
T ss_dssp TSSSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTT--STTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCS
T ss_pred ccchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEeCCCccCCCCCCCCeEEEEecCCccccccc
Confidence 3467999999999999999999999999999999999987 7999999999999999999999999998764321100
Q ss_pred ----------------cchhhHHHHHHHHHHHHHhc-CCcceEEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHH
Q 022734 82 ----------------AGKKVKQSLLGDLLRALRQK-GGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKF 144 (293)
Q Consensus 82 ----------------~~k~~~~~~l~~l~~~L~~~-~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~l 144 (293)
.++...+++|+.+++.|++. +++.+++.|.+||||||||.++.+|++||||+||..|+.||++
T Consensus 208 ~~~g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~l 287 (464)
T 3pq1_A 208 KISGNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSEL 287 (464)
T ss_dssp CEECC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHH
T ss_pred ccccchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHH
Confidence 01223457899999999874 4788999999999999999999999999999999999999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCC-CChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCccccccchhh
Q 022734 145 LFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGT-FNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAE 223 (293)
Q Consensus 145 l~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~-lsSy~l~lmvi~fLQ~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e 223 (293)
++.|.+.||++|+|++++|+||+++||++++.|| ||||+|++|||+|||++.||+||+||++++.... .+
T Consensus 288 l~~y~~~dprlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~---------~~ 358 (464)
T 3pq1_A 288 LYIYGALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADA---------ED 358 (464)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTT---------C-
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCc---------cc
Confidence 9999999999999999999999999999999999 9999999999999999999999999998642110 01
Q ss_pred HHHHHHhhhhcccccCCccCCCCcchHHHHHHHHHHHhccCcchhhhhhccccccc
Q 022734 224 RQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCS 279 (293)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~ 279 (293)
..+.+.|++++..-....+...|++++|+||++||+||++ |||+.++||.
T Consensus 359 ~~~vdg~~~~F~~dl~~l~~~~N~~slgeLL~gFF~yYa~------FDf~~~vIsI 408 (464)
T 3pq1_A 359 KCVIEGNNCTFVRDLSRIKPSQNTETLELLLKEFFEYFGN------FAXXXXXXXX 408 (464)
T ss_dssp --------------------CCCCCCHHHHHHHHHHHGGG------CCCCCCCCCC
T ss_pred ceeeccccccccccHhhcCCCCCcCCHHHHHHHHHHHHHh------CCCccccccc
Confidence 1233444443322111224688999999999999999996 9999999988
No 2
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=100.00 E-value=6.2e-54 Score=405.61 Aligned_cols=255 Identities=22% Similarity=0.310 Sum_probs=216.1
Q ss_pred CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCccccc
Q 022734 3 SYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSA 82 (293)
Q Consensus 3 ~~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~ 82 (293)
..+.|+.+|.+++++++||++|.+.|++++++|++++++. +|+++|.+|||+++|+++|+||||+++..+....
T Consensus 40 ~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~--~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~---- 113 (405)
T 4e8f_A 40 SHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRI--SPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQ---- 113 (405)
T ss_dssp SCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEESHHHHTCCBSSCCEEEEEECCC-------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCC----
Confidence 3568999999999999999999999999999999999997 6999999999999999999999999999875321
Q ss_pred chhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEE-EcCC----ceEEEEeecCchhhhhhHHHHHHhccCchhHH
Q 022734 83 GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFE-TIHQ----NISCDISIDNLCGQIKSKFLFWISQIDGRFRD 157 (293)
Q Consensus 83 ~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~-~~~~----gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~ 157 (293)
..+++.++++.|++. ..+++.|.+||||||||. ++.+ |++||||++|..|+.+|++++.|.+.+|++|+
T Consensus 114 ----~~~~l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~~g~~~t~ll~~y~~~~p~~r~ 187 (405)
T 4e8f_A 114 ----SDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKP 187 (405)
T ss_dssp ----CTTHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHH
T ss_pred ----HHHHHHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecccchHHHHHHHHHHHhhCHHHHH
Confidence 123678888888875 568899999999999999 8778 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHH-hcCCCCCCCchhhhcCCCCCCccccccchhhHHHHHHhhhhccc
Q 022734 158 MVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHF-QTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIAR 236 (293)
Q Consensus 158 L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fL-Q~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~ 236 (293)
|++++|+||+++||++++.||||||+|++||++|| |...||+||+||++.+.... ...+ |+..+..
T Consensus 188 Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~-~~~g------------~~~~f~~ 254 (405)
T 4e8f_A 188 MVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEK-IVDG------------FDVGFDD 254 (405)
T ss_dssp HHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCC-EETT------------EECCCCC
T ss_pred HHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhccccccc-ccCC------------eeecccc
Confidence 99999999999999999999999999999999999 77789999999998764321 0111 1111100
Q ss_pred ccCCccCCCCcchHHHHHHHHHHHhccCcchhhhhhccccccccccchhhh
Q 022734 237 FSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRMLL 287 (293)
Q Consensus 237 ~~~~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~~~~~~ 287 (293)
-....+++.|.+++|+||++||+||+.+ |||+.++||....|+.+.
T Consensus 255 ~l~~~~~~~n~~slg~LL~~FF~yY~~~-----Fd~~~~vIsir~~g~~~~ 300 (405)
T 4e8f_A 255 KLEDIPPSQNYSSLGSLLHGFFRFYAYK-----FEPREKVVTFRRPDGYLT 300 (405)
T ss_dssp CGGGSCCCSCCCCHHHHHHHHHHHHHHT-----CCTTTBEECSSSTTCCCB
T ss_pred chhhhccccccccHHHHHHHHHHHHhcc-----cCCCCcEEEEecCCcccc
Confidence 0112356789999999999999999965 999999999774555443
No 3
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=100.00 E-value=9.3e-54 Score=396.77 Aligned_cols=268 Identities=21% Similarity=0.251 Sum_probs=209.5
Q ss_pred CCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcc-
Q 022734 1 MGSYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCI- 79 (293)
Q Consensus 1 ~~~~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~- 79 (293)
|+.-..|++||.+|+++++||++|.+.|++++++|++++++. +|+++|.+|||++||+++|+||||+|+..++....
T Consensus 1 ~~~~~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~--~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~ 78 (384)
T 3hj4_A 1 MVAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLA--VNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWL 78 (384)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHH--STTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGG
T ss_pred CcchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH--CCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccc
Confidence 556678999999999999999999999999999999999987 69999999999999999999999999998764321
Q ss_pred cccchhhHHHHHH--HHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhcc-CchhH
Q 022734 80 SSAGKKVKQSLLG--DLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQI-DGRFR 156 (293)
Q Consensus 80 ~s~~k~~~~~~l~--~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~-~~~~r 156 (293)
....+......++ ++.+.+.. ..+.++. |.+||||||||.|+.+|++||||+||..|+.||++++.|.+. ++++|
T Consensus 79 ~~~~~~~~~~~lrll~L~k~~~~-~~ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn~~gi~ns~ll~~y~~~~p~rlr 156 (384)
T 3hj4_A 79 QGMERVDEQNNKRMTRFGKEASA-MGMEDVR-YIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYG 156 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH-HTCEEEE-EECSSSCEEEEECTTTCCEEEEEECCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccchhhHHHHHHHHHHHhhccc-CCeeEEe-ecCcccCEEEEEEcCCCeEEEEEecccchHHHHHHHHHHHhcCcHHHH
Confidence 1011111122221 13333322 3566666 459999999999999999999999999999999999999998 56899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCccccccchhhHHHHHHhhhhccc
Q 022734 157 DMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIAR 236 (293)
Q Consensus 157 ~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~ 236 (293)
+|++++|+||+++||++++.||||||+|++|||+|||++ |+||+||++.+... . ... .... +..+...
T Consensus 157 ~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~--~vLP~Lq~~~~~~~--~---~~~---~~~~--~~~~~~~ 224 (384)
T 3hj4_A 157 AYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQEL--GLLPVFSKPTGEFG--E---LTV---ADAE--MLLQEFK 224 (384)
T ss_dssp HHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHH--TSSCCCCCCCSTTS--C---CCH---HHHH--HHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcC--CCCCccccccccCC--c---ccc---cccH--hhhhhhc
Confidence 999999999999999999999999999999999999998 99999999654321 1 100 0111 1122222
Q ss_pred ccC-CccCCCCcchHHHH----HHHHHHHhccCcchhhhhhccccccccccchh-hhhhh
Q 022734 237 FSS-DKYRKINRSSLAHL----FVSFLEKVFIPVMFFLLIFAGNAKCSLDESRM-LLYSL 290 (293)
Q Consensus 237 ~~~-~~~~~~n~~sl~~L----l~~Ff~yY~~~~~~~~f~~~~~~~c~~~~~~~-~~~~~ 290 (293)
..+ ....+.|+++|||| |++||+||+. |||+.++||-...+|- .+|.+
T Consensus 225 l~~~~~~~s~N~~sLgeL~~~lL~~Ff~yY~~------Fdf~~~vISi~~p~~~~~~~~~ 278 (384)
T 3hj4_A 225 LPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAK------YDFSAGTVSLIHPRRHRTVYER 278 (384)
T ss_dssp CCGGGGGCSSCHHHHHHHHHHHHHHHHHHHHH------CCTTTBCBCSSSTTCBHHHHHH
T ss_pred CCCCcCcCCCCcccHHHHHHHHHHHHHHHhee------cCCCCCEEEecCCcccccccch
Confidence 221 12357899999999 9999999995 9999999987665553 44544
No 4
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-51 Score=376.69 Aligned_cols=225 Identities=28% Similarity=0.378 Sum_probs=202.9
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccc
Q 022734 4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAG 83 (293)
Q Consensus 4 ~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~ 83 (293)
.+.|++||.+|+++++||++|.+.|++++++|++++++. +|+++|.+|||+++|+++|+||||+++..+.+.
T Consensus 18 ~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~--~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~------ 89 (323)
T 3nyb_A 18 SDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQL--WPDADLHVFGSYSTDLYLPGSDIDCVVTSELGG------ 89 (323)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTT--CTTCCEEEESTTTTTCCCTTSCEEEEECSSCCG------
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEeCccccCCCCCCCCceEEEecCCCC------
Confidence 467999999999999999999999999999999999997 699999999999999999999999999987642
Q ss_pred hhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHH
Q 022734 84 KKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVK 163 (293)
Q Consensus 84 k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK 163 (293)
.+.++.|.++++.|++.+.+.++++|.+||||||||+|+.+|++||||++|.+|+++|++++.|...+|++|+|++++|
T Consensus 90 -~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li~~~~~~~~~~r~lv~~iK 168 (323)
T 3nyb_A 90 -KESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLIREWLDDTPGLRELVLIVK 168 (323)
T ss_dssp -GGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHHHHHHHSCTTHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1235688999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhhcCCCCCCccccccchhhHHHHHHhhhhcccccCCccC
Q 022734 164 EWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYR 243 (293)
Q Consensus 164 ~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 243 (293)
+||+++||++++.||+|||+|++||++|||++ |+++|. .
T Consensus 169 ~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~-p~~~~~----------------------------------------~ 207 (323)
T 3nyb_A 169 QFLHARRLNNVHTGGLGGFSIICLVFSFLHMH-PRIITN----------------------------------------E 207 (323)
T ss_dssp HHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTC-HHHHTT----------------------------------------C
T ss_pred HHHHHcCCCCccCCCcCHHHHHHHHHHHHHhC-CccCcc----------------------------------------c
Confidence 99999999999999999999999999999997 433331 0
Q ss_pred CCCcchHHHHHHHHHHHhccCcchhhhhhccccccccccc
Q 022734 244 KINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDES 283 (293)
Q Consensus 244 ~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~~ 283 (293)
..+..++|+||++||+||+++ |||..++|+...|+
T Consensus 208 ~~~~~~lg~LL~~Ff~~Y~~~-----Fd~~~~~Isv~~g~ 242 (323)
T 3nyb_A 208 IDPKDNLGVLLIEFFELYGKN-----FGYDDVALGSSDGY 242 (323)
T ss_dssp BCGGGCHHHHHHHHHHHHHHT-----CCTTTEEEEESSSC
T ss_pred CCccccHHHHHHHHHHHhccc-----cCCCCcEEEEecCC
Confidence 023468999999999999965 99999988876665
No 5
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=100.00 E-value=2.7e-51 Score=381.81 Aligned_cols=251 Identities=22% Similarity=0.295 Sum_probs=204.1
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchh
Q 022734 6 VLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKK 85 (293)
Q Consensus 6 ~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~ 85 (293)
.|.+.+.++++.++||++|.+.|++++++|++++++. +|+++|.+|||+++|+++|+||||+++..+...
T Consensus 15 el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~--~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~-------- 84 (349)
T 4fh3_A 15 EFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRI--SPDAELVAFGSLESGLALKNSDMDLCVLMDSRV-------- 84 (349)
T ss_dssp HHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEESHHHHTCCBSSCCEEEEEECCTTS--------
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeeccCCCCCCCCCEEEEEecCCCC--------
Confidence 4556666679999999999999999999999999997 799999999999999999999999999877542
Q ss_pred hHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcC-----CceEEEEeecCchhhhhhHHHHHHhccCchhHHHHH
Q 022734 86 VKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIH-----QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVL 160 (293)
Q Consensus 86 ~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~-----~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~ 160 (293)
.......++.+.+... ..+++.|.+||||||||.+.. +|+.||||++|.+|+++|++++.|...+|++|+|++
T Consensus 85 ~~~~~~~~~~~~~~~~--~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~~g~~~t~ll~~~~~~~~~~r~l~~ 162 (349)
T 4fh3_A 85 QSDTIALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNRLAIHNTLLLSSYTKLDARLKPMVL 162 (349)
T ss_dssp CHHHHHHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred ChHHHHHHHHHHHHhh--cccceEeeeeeeeeEEEEecccccccccceeecCcCcchHHHHHHHHHHHhhcCHHHHHHHH
Confidence 1223344444444432 346788999999999999864 689999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC-CCCCCCchhhhcCCCCCCccccccchhhHHHHHHhhhhcccccC
Q 022734 161 LVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC-VPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSS 239 (293)
Q Consensus 161 ~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~-~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~~ 239 (293)
+||+||+++||++++.||+|||+|++|||+|||+. .||++|+++........ . .+.|+.++..-..
T Consensus 163 ~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~-~------------~~~~~~~f~~~~~ 229 (349)
T 4fh3_A 163 LVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEK-I------------VDGFDVGFDDKLE 229 (349)
T ss_dssp HHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCC-E------------ETTEECCCCCCGG
T ss_pred HHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccc-c------------ccCcccccccchh
Confidence 99999999999999999999999999999999875 78999998764322110 0 0112222211112
Q ss_pred CccCCCCcchHHHHHHHHHHHhccCcchhhhhhccccccccccchhh
Q 022734 240 DKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESRML 286 (293)
Q Consensus 240 ~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~~~~~ 286 (293)
....+.|++++|+||++||+||+.+ |||...+||...++..+
T Consensus 230 ~~~~~~n~~slg~LL~~FF~~Y~~~-----Fd~~~~vIsi~~~~~~~ 271 (349)
T 4fh3_A 230 DIPPSQNYSSLGSLLHGFFRFYAYK-----FEPREKVVTFRRPDGYL 271 (349)
T ss_dssp GSCCCSCCCCHHHHHHHHHHHHHHT-----CCTTTBCBCSSSTTCCC
T ss_pred hcccccCcccHHHHHHHHHHHhhhc-----cCCCCceEEecCCCCcc
Confidence 2356789999999999999999976 99999999987776554
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=100.00 E-value=3.3e-49 Score=368.15 Aligned_cols=251 Identities=17% Similarity=0.162 Sum_probs=206.5
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcc-cCCCCCCCCcceeeecCCC----Ccc
Q 022734 5 NVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFV-SNLFSRWGDLDISIELSNG----SCI 79 (293)
Q Consensus 5 ~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~-tgl~~~~SDiDl~l~~~~~----~~~ 79 (293)
..|+.+|.+.++...++.+|.++|++++++|++++++. +|+++|.+|||++ +|+++|+||||+++..+.. ...
T Consensus 26 ~~l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~--~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~ 103 (353)
T 2ikf_A 26 AVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAV--DPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGG 103 (353)
T ss_dssp HHHHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHH--CTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH--CCCcEEEEecCccccCCCCCCcceeEEEeecccccccccc
Confidence 46889999999999999999999999999999999997 7999999999996 9999999999999986531 100
Q ss_pred ccc---chhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhccCchhH
Q 022734 80 SSA---GKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFR 156 (293)
Q Consensus 80 ~s~---~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r 156 (293)
... .+....+++.++++.|++.+.+.+|+.|.+||||||||++ ++|++||||++|.+|+++|++++.|.+.+|++|
T Consensus 104 ~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~-~~~i~~Dis~~n~~g~~~t~ll~~~~~~~p~~r 182 (353)
T 2ikf_A 104 DAATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG-GGAVDFDITAYRRNGVRNSALLRAYFEQNPPCR 182 (353)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC-SSSCEEEEEESCCHHHHHHHHHHHHHHHSTTHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc-CCCcEEEEEecCccHHHHHHHHHHHHHhCccHH
Confidence 000 0112356889999999988888899999999999999999 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCChHHHHHHHHHHHhcC-CCCCCCchhhhcCCCCCCccccccchhhHHHHHHhhhhc
Q 022734 157 DMVLLVKEWAKAHDINNPKT-GTFNSYSLSLLVLFHFQTC-VPAILPPLKDIYPGNLVDDLKGVRANAERQIAEICAFNI 234 (293)
Q Consensus 157 ~L~~~iK~wak~~~l~~~~~-G~lsSy~l~lmvi~fLQ~~-~p~ilP~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~ 234 (293)
+|+++||+||+++||++++. ||+|||+|++||++|||+. .||++|+++.... ++.+ .
T Consensus 183 ~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~-----~~~~----------------~ 241 (353)
T 2ikf_A 183 WLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVS-----RVEP----------------L 241 (353)
T ss_dssp HHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGG-----GSCS----------------S
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChh-----hccC----------------C
Confidence 99999999999999999999 9999999999999999875 6899999874321 1110 1
Q ss_pred ccccCCccCCCCcchHHHHHHHHHHHhccCcchhhhhhccccccccccch
Q 022734 235 ARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDESR 284 (293)
Q Consensus 235 ~~~~~~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~~~ 284 (293)
+.+.+......|..++|+||++||+||+++ |||...+||...+|.
T Consensus 242 ~~~~~~~~~~~~~~slg~LL~~Ff~~Y~~~-----fd~~~~vIsi~~~~~ 286 (353)
T 2ikf_A 242 PPHLPLEEPADEGLELGTQVLDFLHFFLHE-----FDSDKQVISLNRPGI 286 (353)
T ss_dssp CCCCCCCCCTTTTHHHHHHHHHHHHHHHHT-----SCTTTEEECSSSSSC
T ss_pred CcCCccccCCCCcccHHHHHHHHHHHhccc-----cCcCceEEEcCCCcc
Confidence 122222345678899999999999999965 999999998776653
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=100.00 E-value=1.5e-46 Score=359.35 Aligned_cols=242 Identities=17% Similarity=0.178 Sum_probs=196.8
Q ss_pred CccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCc-ccCCCCCCCCcceeeecCCCCcccc
Q 022734 3 SYNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSF-VSNLFSRWGDLDISIELSNGSCISS 81 (293)
Q Consensus 3 ~~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~-~tgl~~~~SDiDl~l~~~~~~~~~s 81 (293)
.+..++..+.+......+++++.+.|..++++|+.++++. +|+++|++|||+ .+|+++|+||||+++..++. ...
T Consensus 16 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~--~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~-~~~- 91 (468)
T 2b4v_A 16 HYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKW--TPDAKVYCCGSMVTYGQMERGSDLDLACMFDDP-YPS- 91 (468)
T ss_dssp HHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHH--CTTCEEEEETHHHHHSSCBTTCCEEEEEECSSS-SCC-
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH--CCCcEEEEeeCchhcCCCCCCCceeEEEecCCC-Ccc-
Confidence 3567889999998899999999999999999999999997 799999999999 69999999999999998732 111
Q ss_pred cchhhHHHHHHHHHHHHHhc-CC--cceEEEeccCcceEEEEE----Ec-------------------------------
Q 022734 82 AGKKVKQSLLGDLLRALRQK-GG--YRRLQFVAHARVPILKFE----TI------------------------------- 123 (293)
Q Consensus 82 ~~k~~~~~~l~~l~~~L~~~-~~--~~~v~~I~~ArVPIIk~~----~~------------------------------- 123 (293)
.......+.++++.|++. ++ +.+++.|.+|||||||++ ++
T Consensus 92 --~~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 169 (468)
T 2b4v_A 92 --HEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKARTALLDVRNQCVGD 169 (468)
T ss_dssp --HHHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEECCCCHHHHHHHHHSCCCHHHHHHHTEEEEEEESCCCCH
T ss_pred --chhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEEecccccccccccccccccccccccccccccccccccc
Confidence 111112345688888875 23 578999999999999997 21
Q ss_pred ------------------------------------------------------------------------CCceEEEE
Q 022734 124 ------------------------------------------------------------------------HQNISCDI 131 (293)
Q Consensus 124 ------------------------------------------------------------------------~~gi~vDI 131 (293)
.+|++|||
T Consensus 170 ~~~~~~~~~~~~~n~~~~~~~~~~~~c~~~v~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ld~rf~~~~~gi~~DI 249 (468)
T 2b4v_A 170 NDVEYIAEKMGRDNVEGIRVDRTTYGCRIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLDVRFVPEMFMYRWDI 249 (468)
T ss_dssp HHHHHHHHHHCGGGEEEEEEEECSSEEEEEEEESSHHHHHHHHTCCCCSSSSCGGGGGGEEEEESCTTSCCGGGSSCEEE
T ss_pred ccccchhhhcccccccccccccccccccceeecccccchhhhhcccccccccccccccccccccccccccccccceEEEE
Confidence 14789999
Q ss_pred eecCchhhhhhHHHHHHhccCch-hHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC------CCCCCCchh
Q 022734 132 SIDNLCGQIKSKFLFWISQIDGR-FRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC------VPAILPPLK 204 (293)
Q Consensus 132 s~~n~~g~~~t~ll~~~~~~~~~-~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~------~p~ilP~l~ 204 (293)
|+| .+|++||++++.|++.||+ +|+|+++||+||+++||++++.||||||+|++|||||||+. +|+++|++|
T Consensus 250 Sfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~lq 328 (468)
T 2b4v_A 250 SFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPA 328 (468)
T ss_dssp ESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGG
T ss_pred ecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccchh
Confidence 998 8999999999999999999 99999999999999999999999999999999999999986 367888887
Q ss_pred hhcCCCCCCccccccchhhHHHHHHhhhhcccccCCccCCCCcchHHHHHHHHHHHhccCcchhhhhhccccccccccc
Q 022734 205 DIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNAKCSLDES 283 (293)
Q Consensus 205 ~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~~c~~~~~ 283 (293)
++... . .|. ++...|..++|+||++||+||+.+ |||+.++||...|+
T Consensus 329 ~l~~~---~----------------------~~~--p~~~~n~~sLg~LL~~FF~yYg~~-----Fd~~~~vISir~g~ 375 (468)
T 2b4v_A 329 HLPRY---P----------------------DFS--PLYDCDPTELGRLLHGFFIFYAHH-----FDYEREVVSLNRNR 375 (468)
T ss_dssp GSCSS---C----------------------CCC--CCCCCCHHHHHHHHHHHHHHHHHS-----SCTTTEEBCSSSSS
T ss_pred hcccc---c----------------------CCC--cccccCccCHHHHHHHHHHHHccc-----cCCCCcEEEecCCc
Confidence 75321 0 011 123567899999999999999965 99999988887665
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=1.5e-36 Score=292.96 Aligned_cols=211 Identities=20% Similarity=0.250 Sum_probs=179.7
Q ss_pred chHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhh--------------cCCCCEEEeecCcccCCCCCCCCcce
Q 022734 6 VLEPILKDILGM--LNPLREDWETRMKVISDLREVVESVE--------------SLRGATVEPFGSFVSNLFSRWGDLDI 69 (293)
Q Consensus 6 ~L~~~l~~~~~~--~~pt~~e~~~R~~~~~~l~~~l~~~~--------------~~~~~~v~~fGS~~tgl~~~~SDiDl 69 (293)
.++.+|.+++.. +.||+||.+.|+++++.|++++++.. ..++++|.+|||+++|+++|+||||+
T Consensus 37 ~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDID~ 116 (514)
T 1q79_A 37 LLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDA 116 (514)
T ss_dssp HHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEEE
T ss_pred HhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEeeeeccCCCCCCCceeE
Confidence 356677777765 89999999999999999999998521 13589999999999999999999999
Q ss_pred eeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCc-------------
Q 022734 70 SIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNL------------- 136 (293)
Q Consensus 70 ~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~------------- 136 (293)
++..+... ...+++..+.+.|++.+.+.+++.|.+|+||||||+. +|++|||++++.
T Consensus 117 ~~v~p~~~--------~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~~p~~l~l~~ 186 (514)
T 1q79_A 117 LCVAPRHV--------DRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCF--DGIEIDILFARLALQTIPEDLDLRD 186 (514)
T ss_dssp EEEECTTS--------CHHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSCSSBCTTCCTTC
T ss_pred EEecCCcC--------CHHHHHHHHHHHHhcCccCceEEEecCCcccEEEEEE--CCeeEEEEEecCCcccCcccccCCc
Confidence 99987542 1245778888999987889999999999999999998 799999999762
Q ss_pred ---------------hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC
Q 022734 137 ---------------CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201 (293)
Q Consensus 137 ---------------~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~ilP 201 (293)
+|++.+++|..+...++++|.++++||+||++|||+++..||||||+|++||+++||.+ |
T Consensus 187 ~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~-P---- 261 (514)
T 1q79_A 187 DSLLKNLDIRAIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLY-P---- 261 (514)
T ss_dssp GGGGTTCCHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHS-T----
T ss_pred hhhhcccchhhhhhhhhHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhC-C----
Confidence 46777888888888889999999999999999999999999999999999999999986 1
Q ss_pred chhhhcCCCCCCccccccchhhHHHHHHhhhhcccccCCccCCCCcchHHHHHHHHHHHhccCcchhhhhhcccc-cccc
Q 022734 202 PLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNA-KCSL 280 (293)
Q Consensus 202 ~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~-~c~~ 280 (293)
+ .++++|+..||+||++ |+|...+ +|+.
T Consensus 262 ~---------------------------------------------~s~~~LL~~FF~~y~~------~dw~~pV~l~~~ 290 (514)
T 1q79_A 262 N---------------------------------------------AIASTLVHKFFLVFSK------WEWPNPVLLKQP 290 (514)
T ss_dssp T---------------------------------------------CCHHHHHHHHHHHHHS------CCTTSCBCSSCC
T ss_pred C---------------------------------------------CCHHHHHHHHHHHHhc------CCCCCCeEeccc
Confidence 0 1579999999999997 7887543 4554
Q ss_pred cc
Q 022734 281 DE 282 (293)
Q Consensus 281 ~~ 282 (293)
.+
T Consensus 291 ~~ 292 (514)
T 1q79_A 291 EE 292 (514)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 9
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=2.2e-36 Score=292.77 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=181.4
Q ss_pred chHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHhhh-------cCC-------CCEEEeecCcccCCCCCCCCcce
Q 022734 6 VLEPILKDILGM--LNPLREDWETRMKVISDLREVVESVE-------SLR-------GATVEPFGSFVSNLFSRWGDLDI 69 (293)
Q Consensus 6 ~L~~~l~~~~~~--~~pt~~e~~~R~~~~~~l~~~l~~~~-------~~~-------~~~v~~fGS~~tgl~~~~SDiDl 69 (293)
.++.+|.+++.. +.||+||.+.|+++++.|+++++++. +.| +++|.+|||+++|+++|+||||+
T Consensus 24 ~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~SDID~ 103 (530)
T 2hhp_A 24 KLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDT 103 (530)
T ss_dssp HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTCCEEE
T ss_pred hhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhccccCceEEEecccccCCCCCCCceeE
Confidence 456777777776 89999999999999999999998731 123 79999999999999999999999
Q ss_pred eeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEEeecCc-------------
Q 022734 70 SIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDISIDNL------------- 136 (293)
Q Consensus 70 ~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~n~------------- 136 (293)
++..+... ...+++..+.+.|++.+.+.+++.|.+|+||||||+. +|++|||++++.
T Consensus 104 ~v~~p~~~--------~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~~~~~~ip~~l~l~~ 173 (530)
T 2hhp_A 104 LVVVPKHV--------TREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKF--SGISIDLICARLDQPQVPLSLTLSD 173 (530)
T ss_dssp EEEECTTC--------CHHHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEECSSSCBCTTCCSCC
T ss_pred EEecCCcC--------CHHHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEE--CCEeeEEEEeccccccCCcccCCCc
Confidence 99987542 1346788899999987889999999999999999998 899999999764
Q ss_pred ---------------hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcCCCCCCC
Q 022734 137 ---------------CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTCVPAILP 201 (293)
Q Consensus 137 ---------------~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~~p~ilP 201 (293)
+|++.++++..+....+++|.++++||+||++|||+++..|++|||+|++||+++||.+ |
T Consensus 174 ~~~L~~ld~~~~~slng~r~~d~I~~~vp~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~-P---- 248 (530)
T 2hhp_A 174 KNLLRNLDEKDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLY-P---- 248 (530)
T ss_dssp GGGGTTCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHS-T----
T ss_pred hhhhhccchhhhhccchHHHHHHHHHHccCcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcC-C----
Confidence 47788999999988889999999999999999999999999999999999999999975 1
Q ss_pred chhhhcCCCCCCccccccchhhHHHHHHhhhhcccccCCccCCCCcchHHHHHHHHHHHhccCcchhhhhhcccc-cccc
Q 022734 202 PLKDIYPGNLVDDLKGVRANAERQIAEICAFNIARFSSDKYRKINRSSLAHLFVSFLEKVFIPVMFFLLIFAGNA-KCSL 280 (293)
Q Consensus 202 ~l~~l~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~n~~sl~~Ll~~Ff~yY~~~~~~~~f~~~~~~-~c~~ 280 (293)
+ .++++|+..||+||++ |+|...+ +|+.
T Consensus 249 ~---------------------------------------------~s~~~LL~~FF~~y~~------~dw~~pV~l~~~ 277 (530)
T 2hhp_A 249 N---------------------------------------------ACSAVILNRFFIILSE------WNWPQPVILKPI 277 (530)
T ss_dssp T---------------------------------------------CCHHHHHHHHHHHHHH------CCTTSCEESSCC
T ss_pred C---------------------------------------------CCHHHHHHHHHHHHhc------CCCCCceEeccc
Confidence 0 1579999999999997 7887443 4554
Q ss_pred ccc
Q 022734 281 DES 283 (293)
Q Consensus 281 ~~~ 283 (293)
..|
T Consensus 278 ~~g 280 (530)
T 2hhp_A 278 EDG 280 (530)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=99.44 E-value=4.6e-12 Score=119.38 Aligned_cols=167 Identities=20% Similarity=0.239 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCC-CCcceeeecCCCCcccccchh
Q 022734 7 LEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRGATVEPFGSFVSNLFSRW-GDLDISIELSNGSCISSAGKK 85 (293)
Q Consensus 7 L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~-SDiDl~l~~~~~~~~~s~~k~ 85 (293)
+++.+.++++.+.|+++|.+.-....+.|.+.|++. ++++..-||++.|+++++ ||||+.+..+.... +.
T Consensus 3 ~~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~~----~~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~-----~e 73 (437)
T 1r89_A 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDEL----GVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS-----KE 73 (437)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH----TCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC-----HH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHhC----CCeEEEeccccCCCcCCCCCCceEEEEcCCCCC-----HH
Confidence 567788999999999999999999999999999872 369999999999999987 79999999976421 11
Q ss_pred hHHH-HHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEEEE--eecC------chhhhhhHHHHHHhccCch-h
Q 022734 86 VKQS-LLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISCDI--SIDN------LCGQIKSKFLFWISQIDGR-F 155 (293)
Q Consensus 86 ~~~~-~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDI--s~~n------~~g~~~t~ll~~~~~~~~~-~ 155 (293)
+... .+..+.+.++ .+ + +..|..|-|+... +|+++|| ++.- ..++..|.+...|...... +
T Consensus 74 ~l~~~~l~~~~e~l~---~~---~-~~ya~hpyV~~~f--~g~~vDVVP~y~v~~g~~~~tavDrtp~H~~fv~~r~~~~ 144 (437)
T 1r89_A 74 ELRERGLEIGKAVLD---SY---E-IRYAEHPYVHGVV--KGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGK 144 (437)
T ss_dssp HHHHHHHHHHHHHSS---SE---E-EEESSSEEEEEEE--TTEEEEEEEEECCSSSSCCCSHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHH---Hh---h-hhccCCceEEEEe--cceEEEEEEEEEccCCccccccccCcHHHHHHHHhhhhhh
Confidence 1111 1222222232 12 2 3467789888777 6999998 3322 2355557788888865322 8
Q ss_pred HHHHHHHHHHHHHCCCCCC--CCCCCChHHHHHHHHHH
Q 022734 156 RDMVLLVKEWAKAHDINNP--KTGTFNSYSLSLLVLFH 191 (293)
Q Consensus 156 r~L~~~iK~wak~~~l~~~--~~G~lsSy~l~lmvi~f 191 (293)
+.+++++|+|.+..|+.++ ..+|+|||.+-||+++|
T Consensus 145 ~~~VRLLK~f~k~~~~ygse~k~~gfSsYllELLv~~y 182 (437)
T 1r89_A 145 ENEVRLLKGFLKANGIYGAEYKVRGFSGYLCELLIVFY 182 (437)
T ss_dssp HHHHHHHHHHHHHTTCBCCSTTTCCBCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCcCCCcccCCCCCHHHHHHHHHHH
Confidence 9999999999999999866 46889999999999985
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=99.20 E-value=5.4e-10 Score=103.39 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=109.3
Q ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCC-------CEEEeecCcccCCCCCC-CCcceeeecCCCCccc
Q 022734 10 ILKDIL-GMLNPLREDWETRMKVISDLREVVESVESLRG-------ATVEPFGSFVSNLFSRW-GDLDISIELSNGSCIS 80 (293)
Q Consensus 10 ~l~~~~-~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~-------~~v~~fGS~~tgl~~~~-SDiDl~l~~~~~~~~~ 80 (293)
.+..|+ +.++|+.++.+.-...++.|.+.|++.. +.+ .++...||++.|+++++ ||+||++..+......
T Consensus 10 ~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~-~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~ 88 (349)
T 1px5_A 10 DLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERC-FQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFE 88 (349)
T ss_dssp GHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHT-TCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhh-cccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchh
Confidence 455566 7889999999988899999999998731 211 36778899999999986 8999999988632111
Q ss_pred ccchhhHHHHHHHHHHHHHhc---CCcc-eEEEec-cCcceE-EEEEEc----CCceEEEE--eecCch-----------
Q 022734 81 SAGKKVKQSLLGDLLRALRQK---GGYR-RLQFVA-HARVPI-LKFETI----HQNISCDI--SIDNLC----------- 137 (293)
Q Consensus 81 s~~k~~~~~~l~~l~~~L~~~---~~~~-~v~~I~-~ArVPI-Ik~~~~----~~gi~vDI--s~~n~~----------- 137 (293)
........++..+.+.|.+. ..+. ..++.. .-+.|- +.+... ..++++|| ++++..
T Consensus 89 -~~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvPa~~~l~~~~~~~~~~~~ 167 (349)
T 1px5_A 89 -DQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE 167 (349)
T ss_dssp -HHHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEEEECSSCSCCTTSCCCHH
T ss_pred -hHHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEEehhhhcccccccCCChH
Confidence 11122345677777666542 2232 333321 113552 444432 25799996 334210
Q ss_pred ----hh--------------hhhHHHHHHhc-cCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 022734 138 ----GQ--------------IKSKFLFWISQ-IDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 138 ----g~--------------~~t~ll~~~~~-~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
.+ ..|.+...+++ ....++.|++++|+|.+.++.. ...++++||++.+|+++...+.
T Consensus 168 ~y~~li~~~~~~~~~g~~~~~~~~~h~~~v~~~~~~~k~lIRLlK~W~~~~~~~-~~~~~~ssy~lELL~~~a~e~~ 243 (349)
T 1px5_A 168 IYVQLIKECKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKT-HGNKLPPQYALELLTVYAWEQG 243 (349)
T ss_dssp HHHHHHHHHHHHTCTTTTGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHTT-CSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCccchhcCHHHHHHHHHhCcHHHHHHHHHHHHHHHHhhhc-ccCCCCChHHHHHHHHHHHHhC
Confidence 01 11344444443 3457899999999999888642 2357899999999999987765
No 12
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=98.44 E-value=6.8e-06 Score=74.93 Aligned_cols=181 Identities=12% Similarity=0.153 Sum_probs=122.6
Q ss_pred ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhcCCC------CEEEeecCcccCCCCCCC-CcceeeecCCC
Q 022734 4 YNVLEPILKDILGMLNPLREDWETRMKVISDLREVVESVESLRG------ATVEPFGSFVSNLFSRWG-DLDISIELSNG 76 (293)
Q Consensus 4 ~~~L~~~l~~~~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~~~------~~v~~fGS~~tgl~~~~S-DiDl~l~~~~~ 76 (293)
.+.+.+.|.+=-..+.||++|+.+-..+++++++++..+.--|+ ..|...||++.|+.+.++ |+|+++....-
T Consensus 24 d~~~~~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~l 103 (364)
T 4at7_A 24 ETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKIL 103 (364)
T ss_dssp CHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSC
T ss_pred hHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCC
Confidence 46788888888889999999999999999999999987532233 368889999999999987 99999988754
Q ss_pred CcccccchhhHHHHHHHHHHHHHhcCCcceEEE--------eccCcceEEEEEEc-----------CCceEEEEeecCch
Q 022734 77 SCISSAGKKVKQSLLGDLLRALRQKGGYRRLQF--------VAHARVPILKFETI-----------HQNISCDISIDNLC 137 (293)
Q Consensus 77 ~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~--------I~~ArVPIIk~~~~-----------~~gi~vDIs~~n~~ 137 (293)
+ .+.....+++++.+.|+.......+.+ |..+. +.+++.-. ..=++...+..+..
T Consensus 104 P-----T~e~v~~L~~kV~e~L~~q~~~e~~~~~~~e~~~~I~~~~-~~v~i~It~tsp~lrk~dp~~~Ld~~~cl~aLa 177 (364)
T 4at7_A 104 P-----TLEAVAALGNKVVESLRAQDPSEVLTMLTNETGFEISSSD-ATVKILITTVPPNLRKLDPELHLDIKVLQSALA 177 (364)
T ss_dssp C-----BHHHHHHHHHHHHHHHHHHCTTSCCEEEEETTEEEEECSS-CEEEEEEEECHHHHHTCCTTTBCCHHHHHHHHH
T ss_pred C-----CHHHHHHHHHHHHHHhhhhccccceeeccCcceEEEecCC-CcEEEEEEeCChhhccCChhHhcCHHHHHHHHH
Confidence 3 233344567888888876532222221 11111 11222210 01111112333445
Q ss_pred hhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCCCCCCCChHHHHHHHHHHHhcC
Q 022734 138 GQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNPKTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 138 g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
+++.+++.+.-+. +..++.+++++|...++.. ..+.|+.|++.+++.+-+-+.
T Consensus 178 alRhAkWfq~na~-~s~v~~lIRIlkDlc~R~~----~w~pL~~waLELL~~~Ai~s~ 230 (364)
T 4at7_A 178 AIRHARWFEENAS-QSTVKVLIRLLKDLRIRFP----GFEPLTPWILDLLGHYAVMNN 230 (364)
T ss_dssp HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCG----GGTTCCHHHHHHHHHHHHHSS
T ss_pred HhhhhHHHHhhcc-ccccceeehhhHHHHHhcC----CcCCCCHHHHHHHHHHHHhcC
Confidence 6777888876554 4667899999999766652 236899999999999988874
No 13
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=98.06 E-value=1.9e-05 Score=60.86 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 32 ISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 32 ~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
++.+.+.+++. .+...+.+|||++.|-+.++||||++|..+.
T Consensus 14 ~~~i~~~l~~~--~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 55 (114)
T 1no5_A 14 LAIVKTILQQL--VPDYTVWAFGSRVKGKAKKYSDLDLAIISEE 55 (114)
T ss_dssp HHHHHHHHHHH--CTTSEEEEEGGGTTTCCCTTCCEEEEEECSS
T ss_pred HHHHHHHHHHh--CCCCEEEEEeccCCCCCCCCCCeEEEEEeCC
Confidence 44566666653 3567999999999999999999999998764
No 14
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=97.78 E-value=1.6e-05 Score=59.46 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCC-CCcceeeecCC
Q 022734 31 VISDLREVVESVESLRGATVEPFGSFVSNLFSRW-GDLDISIELSN 75 (293)
Q Consensus 31 ~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~-SDiDl~l~~~~ 75 (293)
+++.+.+.+++. ++...+.+|||++.|-+.++ ||||+.+..+.
T Consensus 3 ~l~~i~~~l~~~--~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKD--VQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHH--CTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHH--cCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 456677777765 46689999999999999999 99999998754
No 15
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.65 E-value=4e-05 Score=57.47 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=26.5
Q ss_pred CCCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 46 RGATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 46 ~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
+-..+.+|||++.|-+.++||||+++..+.
T Consensus 24 ~v~~v~LFGS~arG~~~~~SDiDl~V~~~~ 53 (98)
T 1wot_A 24 GAVRVRVFGSVARGEAREDSDLDLLVAFEE 53 (98)
T ss_dssp TCSSCEECSHHHHTCCCTTCCCEEEECCCS
T ss_pred CCcEEEEEccccCCCCCCCCCEEEEEEeCC
Confidence 446799999999999999999999997754
No 16
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.59 E-value=4.8e-05 Score=58.45 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCCC-CEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 25 WETRMKVISDLREVVESVE-SLRG-ATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 25 ~~~R~~~~~~l~~~l~~~~-~~~~-~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
...+.++++.+++++..+. .+|+ ..+.+|||++.|-+.++||||++|..+.
T Consensus 9 ~~~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 9 IESQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 3456667777777666542 2545 5799999999999999999999998764
No 17
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=96.62 E-value=0.0011 Score=57.48 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhhc-CCC-CEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 26 ETRMKVISDLREVVESVES-LRG-ATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 26 ~~R~~~~~~l~~~l~~~~~-~~~-~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
-.++.+.+.++++++.+.. +++ ..+.+|||++.|-+.++||||++|..+..
T Consensus 17 ~~~q~Vq~eL~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 17 LYFQGVQHTIARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVSTQ 69 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred cChHHHHHHHHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecCC
Confidence 3444554555554443321 344 68999999999999999999999998764
No 18
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=96.41 E-value=0.035 Score=50.96 Aligned_cols=165 Identities=14% Similarity=0.158 Sum_probs=98.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhhcC---------C--------------------------C----CEEEeecC
Q 022734 15 LGMLNPLREDWETRMKVISDLREVVESVESL---------R--------------------------G----ATVEPFGS 55 (293)
Q Consensus 15 ~~~~~pt~~e~~~R~~~~~~l~~~l~~~~~~---------~--------------------------~----~~v~~fGS 55 (293)
...+.|++||+++-+.++..+++.++.+-.+ + . .-|.-.|+
T Consensus 20 H~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVMRVG~ 99 (383)
T 4at7_B 20 HSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVMRVGL 99 (383)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEEECHH
T ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeeeEece
Confidence 3568999999999999999999999854210 0 0 12555899
Q ss_pred cccCCCCCCC-CcceeeecCCCCcccccchhhHHHHHHHHHHHH----HhcC-CcceEEE-eccCcceEEEEEEc-CCce
Q 022734 56 FVSNLFSRWG-DLDISIELSNGSCISSAGKKVKQSLLGDLLRAL----RQKG-GYRRLQF-VAHARVPILKFETI-HQNI 127 (293)
Q Consensus 56 ~~tgl~~~~S-DiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L----~~~~-~~~~v~~-I~~ArVPIIk~~~~-~~gi 127 (293)
++-|+.+.+- ++|+++....-+ ...++.++++.| +... .-..|.. ...| -|..... ...+
T Consensus 100 laKGlLLkGd~~veLVvlck~kP---------T~~ll~~va~~L~~qL~~~t~~~y~v~~~~~ea---~i~i~~~~~p~~ 167 (383)
T 4at7_B 100 VAKGLLLKGDLDLELVLLCKEKP---------TTALLDKVADNLAIQLTTVTEDKYEILQSVDDA---AIVIKNTKEPPL 167 (383)
T ss_dssp HHHTCCCTTCCEEEEEEEESSCC---------BHHHHHHHHHHHHHHHTTTCCCCCEEEEEGGGT---EEEEECSSSSCC
T ss_pred ecccceECCCCceeEEEEeCCCC---------cHHHHHHHHHHHHHHHhhccCCceEEeecCCcc---eEEEecCCCCCe
Confidence 9999999875 999999887543 234555555544 3311 1112221 2222 1112221 2235
Q ss_pred EEEEeecCc---------------------------------hhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCCCC
Q 022734 128 SCDISIDNL---------------------------------CGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDINNP 174 (293)
Q Consensus 128 ~vDIs~~n~---------------------------------~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~~~ 174 (293)
.|-|++... .+++.+++.+.-+..-+.+..+++++|...++..
T Consensus 168 ~v~I~lTSp~~re~~~~~~~~~~~~~~dp~d~Ld~~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~---- 243 (383)
T 4at7_B 168 SLTIHLTSPVVREEMEKVLAGETLSVNDPPDVLDRQKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVP---- 243 (383)
T ss_dssp EEEEEEECHHHHHHHHHHHTTCCCCCCCCTTBCCHHHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCG----
T ss_pred EEEEEECCcccccchhhcccccccccCChhhcCCHHHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcC----
Confidence 555555332 1222222222222222357789999999666652
Q ss_pred CCCCCChHHHHHHHHHHHhcC
Q 022734 175 KTGTFNSYSLSLLVLFHFQTC 195 (293)
Q Consensus 175 ~~G~lsSy~l~lmvi~fLQ~~ 195 (293)
..+.|+.|++-+|+.+-+-..
T Consensus 244 ~~~pL~~waLELL~~~ai~s~ 264 (383)
T 4at7_B 244 TWGPLRGWPLELLCEKSIGTA 264 (383)
T ss_dssp GGGGGTTHHHHHHHHHHHHTS
T ss_pred CcCCCcHhHHHHHHHHHhhCC
Confidence 225799999999999988754
No 19
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=96.23 E-value=0.0017 Score=56.89 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhcCC--CCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 30 KVISDLREVVESVESLR--GATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~--~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
.+++.+.+.+++. ++ -..+.+|||.+.|-+.++||||+.|.....
T Consensus 14 ~~~~~~~~~l~~~--~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 14 KIVHEIKERILDK--YGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp HHHHHHHHHHHHH--HGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred HHHHHHHHHHHHH--cCCCeeEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 3444444444432 23 367999999999999999999999987654
No 20
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=93.62 E-value=0.24 Score=45.02 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEE
Q 022734 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQF 109 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~ 109 (293)
.+.+.|.+.++++ .|+.++.+-||+.-|-.+ .+|||+.+..++..... .+ ...++..+...|.+.+...++..
T Consensus 157 ~ia~~i~~~l~~~--~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~--~~--~~~l~~~v~~~l~~~~~v~~~l~ 229 (335)
T 2fmp_A 157 QMQDIVLNEVKKV--DSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSES--TK--QPKLLHQVVEQLQKVHFITDTLS 229 (335)
T ss_dssp HHHHHHHHHHHHH--CTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSC--BC--SSCHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHhc--CCCcEEEeccccccccCc-cCCeEEEEECCCccccc--cc--hhhhHHHHHHHHHhCCcceeeee
Confidence 4555666666665 478999999999877554 46999999877432100 00 11356677777877777666555
Q ss_pred eccCcceEE-EEEEcC-----CceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCC
Q 022734 110 VAHARVPIL-KFETIH-----QNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (293)
Q Consensus 110 I~~ArVPII-k~~~~~-----~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~ 172 (293)
....+.-.+ ++.... .++.|||-+-.... ..+.++.+--+ +..-+-++.||+++|+.
T Consensus 230 ~g~~k~~~v~~l~~~~~~~~~~~~rVDl~~vp~~~-~~~aLl~fTGS-----~~fnr~lR~~A~~kG~k 292 (335)
T 2fmp_A 230 KGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQ-YYCGVLYFTGS-----DIFNKNMRAHALEKGFT 292 (335)
T ss_dssp ECSSEEEEEECCCCCTTCCCCCCEEEEEEECCGGG-HHHHHHHHHCC-----HHHHHHHHHHHHHTTEE
T ss_pred cCCceEEEEEEeCCcccccCCCceEEEEEEECHHH-HHHHHHHhhCC-----HHHHHHHHHHHHHcCCc
Confidence 544443332 222111 28999998865433 33334433222 23346788999998863
No 21
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=93.00 E-value=0.37 Score=43.74 Aligned_cols=127 Identities=16% Similarity=0.254 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEE
Q 022734 29 MKVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQ 108 (293)
Q Consensus 29 ~~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~ 108 (293)
..+.+.|.+.++.+ .|+.++.+-||+.-|-.+ .+|||+.+..++... ...++..+...|.+.+...++.
T Consensus 153 ~~ia~~i~~~l~~~--~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~--------~~~ll~~v~~~l~~~~~i~~~l 221 (335)
T 2bcq_A 153 TEIEQTVQKAAQAF--NSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRS--------HRGIFSRLLDSLRQEGFLTDDL 221 (335)
T ss_dssp HHHHHHHHHHHHTT--CTTCEEEECHHHHTTCSE-ESSEEEEEECTTSST--------TTTCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEccccccCCCC-CCCeEEEEecCCchh--------hhhHHHHHHHHHHhCCchHHHh
Confidence 34555666777765 478999999999977655 469999998775421 1236777777887766665543
Q ss_pred Eecc--C-cceEEEE-EEc---CCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCC
Q 022734 109 FVAH--A-RVPILKF-ETI---HQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (293)
Q Consensus 109 ~I~~--A-rVPIIk~-~~~---~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~ 172 (293)
.... . ..-...+ ..+ ..++.|||-+-.... ..+.++.+--+ +..-+-++.||+++|+.
T Consensus 222 ~~~~~~g~~~k~~~v~~l~~~~~~~~rVDl~~vp~~~-~g~ALl~fTGS-----~~fnr~lR~~A~~~G~k 286 (335)
T 2bcq_A 222 VSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSE-FACALLYFTGS-----AHFNRSMRALAKTKGMS 286 (335)
T ss_dssp ECCTTSTTCCEEEEEECCSSTTCCCEEEEEEECCGGG-HHHHHHHHHCC-----HHHHHHHHHHHHHTTCE
T ss_pred hccccCCCCceEEEEEEccCCCCCceEEEEEEECHHH-HHHHHHHhhCC-----HHHHHHHHHHHHHcCCC
Confidence 3210 1 1112122 222 268999998865433 33334433222 23347889999998873
No 22
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=91.72 E-value=0.16 Score=45.09 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCC-EEEeecCcccCCCCCCCCcceeeecCC
Q 022734 24 DWETRMKVISDLREVVESVESLRGA-TVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 24 e~~~R~~~~~~l~~~l~~~~~~~~~-~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
.....+++++.|.+.+++ .+.+ .|.++||.++|-....||+|+++...+
T Consensus 20 ~m~~~~e~l~~I~~~~~~---d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 20 HMLKQKELIANVKNLTES---DERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp --CHHHHHHHHHHHHHHH---CTTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred CccCHHHHHHHHHHHHhc---CCCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 344556778888887765 3454 588999999999889999999999875
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=86.58 E-value=2.7 Score=38.32 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcc
Q 022734 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYR 105 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~ 105 (293)
.+.+.|.+.++++ .|+.++.+-||+.-|-.+ .+|||+.+..++... ...+|..+...|.+.+...
T Consensus 161 ~i~~~i~~~l~~~--~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~--------~~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 161 ALQQLIEAAVRQT--LPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQ--------EVGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp HHHHHHHHHHHTT--CTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTT--------TTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhc--CCCcEEEEccccccCCCc-cCCeEEEEecCChhh--------hhhHHHHHHHHHHhCCCee
Confidence 4555666677765 588999999999977655 469999998775431 1237778888887765544
No 24
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=83.32 E-value=7.1 Score=37.75 Aligned_cols=115 Identities=11% Similarity=0.147 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEE
Q 022734 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQF 109 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~ 109 (293)
.+.+.|.+.++.+ -+..++.+-||+.-|-.+ .+|||+.+..++. . .+...|.+.+...++..
T Consensus 165 ~~~~~i~~~l~~~--~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~~-----------~----~v~~~l~~~~~~~~~~~ 226 (575)
T 3b0x_A 165 SLARSLLEAIRAL--PGVERAELCGSARRYKDT-VGDLDFLVASREG-----------E----RAVEGFVRLPQVKEVYA 226 (575)
T ss_dssp HHHHHHHHHHHTS--TTCCEEEECHHHHTTCSE-ESSEEEEEECSSH-----------H----HHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHHHHHhC--CCCcEEEEccccccCCCc-cCCeEEEEeCCCH-----------H----HHHHHHHhCcchhhHhh
Confidence 3445556666654 367899999999876544 3599999986542 1 23344555555544433
Q ss_pred eccCcceEEEEEEcCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCCC
Q 022734 110 VAHARVPILKFETIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDIN 172 (293)
Q Consensus 110 I~~ArVPIIk~~~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l~ 172 (293)
-...+..+ .. ..|+.|||-+-.... ..+.++.+--+ +..-+-++.||+++|+.
T Consensus 227 ~g~~k~~~---~~-~~~~rvDl~~~~~~~-~~~al~~~TGs-----~~~n~~lR~~A~~~g~~ 279 (575)
T 3b0x_A 227 KGKERATV---FL-KNGLQVDLRVVPPES-YGAGLQYLTGS-----AAHSIRLRALAQEKGLK 279 (575)
T ss_dssp ECSSEEEE---EE-TTSCEEEEEEECGGG-HHHHHHHHHCC-----HHHHHHHHHHHHHTTCE
T ss_pred cCCCceEE---Ec-cCCcEEEEEEECHHH-HHHHHHHhhCC-----HHHHHHHHHHHHHcCCC
Confidence 22333222 22 378999998865433 33344443322 23447889999998874
No 25
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=82.29 E-value=1.2 Score=36.36 Aligned_cols=104 Identities=11% Similarity=0.100 Sum_probs=60.9
Q ss_pred CCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHh--cCCcc-eEEEeccCcceEEEEE
Q 022734 45 LRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQ--KGGYR-RLQFVAHARVPILKFE 121 (293)
Q Consensus 45 ~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~--~~~~~-~v~~I~~ArVPIIk~~ 121 (293)
.|++++.+-||+.-|-.+ .+|||+.+..++. ..+.+.|.+ .+... ++..-...+.-+ ++.
T Consensus 29 ~~g~~v~iaGS~RRgket-~gDiDiLit~~~~---------------~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~ 91 (174)
T 1jaj_A 29 ILSKNIVAVGSLRREEKM-LNDVDLLIIVPEK---------------KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIE 91 (174)
T ss_dssp ECTTTEEEEEHHHHTCSE-ECCEEEEEEESSH---------------HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEE
T ss_pred CCCcEEEEeccccCCCCC-CCCEEEEEecCCH---------------HHHHHHHHhccCCceeHhHeecCCCeEEE-EeC
Confidence 578999999999977554 3499999986531 123344444 45444 443333333222 222
Q ss_pred EcCCceEEEEeecCchhhhhhHHHHHHhccCchhHHHHHHHHHHHHHCCC
Q 022734 122 TIHQNISCDISIDNLCGQIKSKFLFWISQIDGRFRDMVLLVKEWAKAHDI 171 (293)
Q Consensus 122 ~~~~gi~vDIs~~n~~g~~~t~ll~~~~~~~~~~r~L~~~iK~wak~~~l 171 (293)
..+.++.|||-+-.... ..+.++.+--+ +....-++.||+++|+
T Consensus 92 ~~~~~~rVDl~~vp~~~-fg~ALl~fTGS-----k~hn~~lR~~A~~kG~ 135 (174)
T 1jaj_A 92 WEKKTYQLDLFTALAEE-KPYAIFHFTGP-----VSYLIRIRAALKKKNY 135 (174)
T ss_dssp SSSCCEEEEEEEEETTC-HHHHHHHHHSC-----HHHHHHHHHHHHHTTE
T ss_pred CCCCceEEEEEEeCHHH-HHHHHHHhHCC-----HHHHHHHHHHHHHcCC
Confidence 21278999998855433 23334433222 2334778889999876
No 26
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=80.72 E-value=5.1 Score=35.39 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhcCCCCE-EEeecCcccCC--CCCCCCcceeeecCC
Q 022734 30 KVISDLREVVESVESLRGAT-VEPFGSFVSNL--FSRWGDLDISIELSN 75 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~-v~~fGS~~tgl--~~~~SDiDl~l~~~~ 75 (293)
++++.+.++.+. .+.++ |.+-||.+++- .-.-||+|+++...+
T Consensus 8 em~~~i~~~a~~---d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALN---DERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHH---CTTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcC---CcCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 567777777765 34454 77889999965 677799999999864
No 27
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=74.48 E-value=8.9 Score=35.17 Aligned_cols=66 Identities=24% Similarity=0.256 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCc
Q 022734 30 KVISDLREVVESVESLRGATVEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGY 104 (293)
Q Consensus 30 ~~~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~ 104 (293)
.+.+.|.+.++++ .|+.++.+-||+.-|-.+ .+|||+.+..++.. ......+|..+...|.+.+..
T Consensus 181 ~ia~~i~~~l~~~--~~~~~v~i~GSyRRgket-~gDvDilit~~~~~------~~~~~~ll~~vv~~L~~~~~i 246 (381)
T 1jms_A 181 AVSMLVKEAVVTF--LPDALVTMTGGFRRGKMT-GHDVDFLITSPEAT------EDEEQQLLHKVTDFWKQQGLL 246 (381)
T ss_dssp HHHHHHHHHHHHH--CTTCEEEECHHHHTTCSC-BSSEEEEEECTTCC------HHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhc--CCCcEEEEccccccCCCC-cCCeEEEEeCCCcc------ccchhhHHHHHHHHHHhCCCc
Confidence 4555666666665 588999999999977654 45999999877542 111234777888888776554
No 28
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=55.07 E-value=19 Score=33.12 Aligned_cols=107 Identities=18% Similarity=0.237 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH---HHHHHHHHHhhhcCCCCEEEeecCcccCCCCCC---CCcceeeecCCCCccc
Q 022734 7 LEPILKDILGMLNPLREDWETRMKV---ISDLREVVESVESLRGATVEPFGSFVSNLFSRW---GDLDISIELSNGSCIS 80 (293)
Q Consensus 7 L~~~l~~~~~~~~pt~~e~~~R~~~---~~~l~~~l~~~~~~~~~~v~~fGS~~tgl~~~~---SDiDl~l~~~~~~~~~ 80 (293)
+..++..-++...|++.+...|..+ +..+.+++++...-.+-...+|||+..-+-.|+ +|||+.=.
T Consensus 137 la~~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrrhNk~CicYGSySlhlLNp~I~YgDIDilqT-------- 208 (479)
T 3er9_B 137 LARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQT-------- 208 (479)
T ss_dssp HHHHHHHHHCCCC-----------CCTTHHHHHHHHHHHHHHCTTTEEEESHHHHHTTCTTCCCCSCEEEES--------
T ss_pred HHHHHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHhcCCCeEEeeceeeeecCCCcccCCcceeee--------
Confidence 4445555455566665454455432 444444444322224566789999988776654 89999632
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEE----EEEEcCCceEEE
Q 022734 81 SAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPIL----KFETIHQNISCD 130 (293)
Q Consensus 81 s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPII----k~~~~~~gi~vD 130 (293)
..+.+|-.++-.+.---+. ++.. -+||-+ -+.++..+.-+|
T Consensus 209 -----Nar~fLInlafLI~FitG~-~v~L---lkVPyLknyivlkdee~~hIiD 253 (479)
T 3er9_B 209 -----NSRTFLIDLAFLIKFITGN-NIIL---SKIPYLRNYMVIKDENDNHIID 253 (479)
T ss_dssp -----SHHHHHHHHHHHHHHHHCC-CCEE---EECTTSSSEEEEECTTCCEEEE
T ss_pred -----ccHHHHHHHHHHHhhhcCc-eEEE---EEcccccceEEEEecCCCEEEE
Confidence 2456776666655432222 2222 277854 355654555555
No 29
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=48.23 E-value=68 Score=25.53 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCEEEeecCccc---CCCCCCCCcceeee
Q 022734 28 RMKVISDLREVVESVESLRGATVEPFGSFVS---NLFSRWGDLDISIE 72 (293)
Q Consensus 28 R~~~~~~l~~~l~~~~~~~~~~v~~fGS~~t---gl~~~~SDiDl~l~ 72 (293)
|..+...++++.+.+ .-.++.-.+-||++. |...+.-|||+.+.
T Consensus 15 ~~~~~~~L~~i~~~L-~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~ 61 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRL-XNEXVNWVVTGSLSFALQGVPVEVHDIDIQTD 61 (169)
T ss_dssp CHHHHHHHHHHHHHH-TTSSCCEEEEHHHHHHHTTCCCCCCSEEEEEC
T ss_pred cHHHHHHHHHHHHHH-HhcCCCEEEeHHHHHHHcCCCCCCCccEEEec
Confidence 334444455555443 125788999999965 66667779999983
No 30
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=45.08 E-value=17 Score=23.56 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=21.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCCChHH
Q 022734 159 VLLVKEWAKAHDINNPKTGTFNSYS 183 (293)
Q Consensus 159 ~~~iK~wak~~~l~~~~~G~lsSy~ 183 (293)
..-|+.||+..|+.-+.+|-++.=.
T Consensus 15 ~~aIR~WAr~nG~~VsdRGRIp~~V 39 (55)
T 2kng_A 15 SAAIREWARRNGHNVSTRGRIPADV 39 (55)
T ss_dssp HHHHHHHHHHTTCCCCSSSCCCHHH
T ss_pred hHHHHHHHHHcCCcCCCCCCCCHHH
Confidence 4579999999999998899988643
No 31
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=37.36 E-value=28 Score=32.36 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=25.5
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSN 75 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~ 75 (293)
+.-|..+||..-+=-.+.||+|++++.++
T Consensus 154 ~~aviamGk~Gr~EL~~~SDiDli~l~~~ 182 (440)
T 1v4a_A 154 PLLILGMGKLGGGELNFSSDIDLIFAWPE 182 (440)
T ss_dssp CCEEEECHHHHTTCCCSSCCEEEEEEECC
T ss_pred CEEEEEeccccccCcCCCCCcceEEEeCC
Confidence 36789999999988999999999998774
No 32
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=34.26 E-value=40 Score=31.98 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=25.7
Q ss_pred CCEEEeecCcccCCCCCCCCcceeeecCCC
Q 022734 47 GATVEPFGSFVSNLFSRWGDLDISIELSNG 76 (293)
Q Consensus 47 ~~~v~~fGS~~tgl~~~~SDiDl~l~~~~~ 76 (293)
+.-|..+|+..-+=-.+.||+|++++.++.
T Consensus 234 ~~aviamGklGg~EL~~~SDiDlifv~~~~ 263 (498)
T 3k7d_A 234 GFAVVGYGKLGGWELGYSSDLDLIFLHDCP 263 (498)
T ss_dssp SEEEEEEHHHHTTCCCTTCCEEEEEEECCC
T ss_pred CEEEEeeccccccccCcccccceeeeecCc
Confidence 367899999998888899999999988754
No 33
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=22.99 E-value=4e+02 Score=25.31 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=49.0
Q ss_pred EEeecCcccCCCCCCCCcceeeecCCCCcccccchhhHHHHHHHHHHHHHhcCCcceEEEeccCcceEEEEEEcCCceEE
Q 022734 50 VEPFGSFVSNLFSRWGDLDISIELSNGSCISSAGKKVKQSLLGDLLRALRQKGGYRRLQFVAHARVPILKFETIHQNISC 129 (293)
Q Consensus 50 v~~fGS~~tgl~~~~SDiDl~l~~~~~~~~~s~~k~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~v 129 (293)
+.+-||+.-|-.+ .+|||+.+.. +. ..+ |.+.+.+. .-...+.-+ +. .|+.|
T Consensus 182 ~~~~Gs~RR~~e~-~gDiD~li~~-~~-----------~~v-------l~~~~~v~---~~g~~k~~~-~~----~~~~v 233 (578)
T 2w9m_A 182 PAPAGDVRRGLET-VRAAELTVTG-TP-----------DDV-------LARLPELT---VQGDGVLSG-DY----EGVPV 233 (578)
T ss_dssp CEECHHHHHTCSE-ESSEEEEEES-CH-----------HHH-------HHHCTTCE---EC---CEEE-EE----TTEEE
T ss_pred CEEecccccCCCc-cCCEEEEEec-Ch-----------HHH-------HhcCccce---ecCCceEEE-EE----CCEEE
Confidence 8889999876544 3499999976 31 111 33333332 111223222 22 68999
Q ss_pred EEeecCchhhhhhHHHHHHhccCchhHHHH-HHHHHHHHHCCCC
Q 022734 130 DISIDNLCGQIKSKFLFWISQIDGRFRDMV-LLVKEWAKAHDIN 172 (293)
Q Consensus 130 DIs~~n~~g~~~t~ll~~~~~~~~~~r~L~-~~iK~wak~~~l~ 172 (293)
||-+-.... ..+.++.+- . ... +-++.||+++|+.
T Consensus 234 Dl~~~~~~~-~~~al~~~T-G------~~n~~~lr~~A~~~g~~ 269 (578)
T 2w9m_A 234 EIACAPAEA-RGALDLLRS-G------EHFAGQVQAAAQARGFT 269 (578)
T ss_dssp EEEEECTTT-HHHHHHHTS-C------HHHHHHHHHHHHTTTCE
T ss_pred EEEEECHHH-HHHHHHHHh-h------hhHHHHHHHHHHHcCCC
Confidence 998865433 223333321 1 444 7889999998863
No 34
>1sy9_B Cyclic-nucleotide-gated olfactory channel; helix-turn-helix, calcium-binding protein; NMR {Xenopus laevis}
Probab=22.40 E-value=68 Score=16.85 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=12.9
Q ss_pred chhHHHHHHHHHHHHH
Q 022734 153 GRFRDMVLLVKEWAKA 168 (293)
Q Consensus 153 ~~~r~L~~~iK~wak~ 168 (293)
.|+..|+-+++.||.+
T Consensus 8 rri~rlvgv~r~wa~~ 23 (26)
T 1sy9_B 8 RRIARLVGVLREWAYR 23 (26)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3677888999999865
No 35
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=21.52 E-value=28 Score=25.22 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHhh
Q 022734 6 VLEPILKDILGMLNP----LREDWETRMKVISDLREVVESV 42 (293)
Q Consensus 6 ~L~~~l~~~~~~~~p----t~~e~~~R~~~~~~l~~~l~~~ 42 (293)
.|...|.++.+.+.- +++|+..|++.+..+++-+..+
T Consensus 47 el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~l 87 (95)
T 2c5k_T 47 DVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDAL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666555544 7778888888888888776654
Done!