BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022735
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|B Chain B, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|C Chain C, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
 pdb|3A2E|D Chain D, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
           Protein From Ginkgo Biloba Seeds
          Length = 108

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 81  GLFQCRGDLSNSDCYNCVSKLPTLSDKQCGKTISARVQLLGCYMLYEVSGF 131
           G   C+  +S SDC  C+S L       C   I ARVQL+ C++ YE   F
Sbjct: 58  GRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108



 Score = 37.4 bits (85), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 150 AGSGFEERRDAALQAM-ENGVVSGHGFYTTSYQS-----VFLLAQCEGDLGDSDCGDCVK 203
           +GS F     A L  + +N   SG+ + T+   S      +  A C+  +  SDC  C+ 
Sbjct: 17  SGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLS 76

Query: 204 GAVQRAQVECGSSISGQVYLHKCFISY 230
             V R    C ++I  +V L  CFI Y
Sbjct: 77  NLVNRIFSICNNAIGARVQLVDCFIQY 103


>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M
           Proneurosin
          Length = 223

 Score = 27.7 bits (60), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 189 CEGDLGDS-DCGDCVKGAVQRAQVECGSSISGQVYLHKC 226
           C+GD G    CGD ++G V    + CGS     VY + C
Sbjct: 173 CQGDSGGPLVCGDHLRGLVSWGNIPCGSKEKPGVYTNVC 211


>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A
           Para-Amidobenzylanmine P1 Group Carry A High Binding
           Efficiency
 pdb|3VFE|A Chain A, Virtual Screening And X-Ray Crystallography For Human
           Kallikrein 6 Inhibitors With An Amidinothiophene P1
           Group
          Length = 223

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 189 CEGDLGDS-DCGDCVKGAVQRAQVECGSSISGQVYLHKC 226
           C+GD G    CGD ++G V    + CGS     VY + C
Sbjct: 172 CQGDSGGPLVCGDHLRGLVSWGNIPCGSKEKPGVYTNVC 210


>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
           Inhibitor
 pdb|1LO6|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine
           Inhibitor At 1.56 A Resolution
          Length = 223

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 189 CEGDLGDS-DCGDCVKGAVQRAQVECGSSISGQVYLHKC 226
           C+GD G    CGD ++G V    + CGS     VY + C
Sbjct: 172 CQGDSGGPLVCGDHLRGLVSWGNIPCGSKEKPGVYTNVC 210


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,446,199
Number of Sequences: 62578
Number of extensions: 206812
Number of successful extensions: 328
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 7
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)