Query 022735
Match_columns 293
No_of_seqs 218 out of 1493
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 5.6E-24 1.2E-28 167.6 8.4 98 34-131 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 1.6E-22 3.5E-27 159.3 8.3 85 151-235 16-106 (106)
3 PF08693 SKG6: Transmembrane a 97.3 0.00015 3.2E-09 46.4 1.9 27 262-288 14-40 (40)
4 PF01102 Glycophorin_A: Glycop 95.0 0.011 2.3E-07 47.6 1.3 21 255-275 59-79 (122)
5 PTZ00382 Variant-specific surf 93.8 0.055 1.2E-06 41.7 2.7 19 255-273 61-79 (96)
6 PF02009 Rifin_STEVOR: Rifin/s 93.5 0.024 5.1E-07 52.6 0.4 29 262-290 258-286 (299)
7 PF02439 Adeno_E3_CR2: Adenovi 93.4 0.068 1.5E-06 33.7 2.2 18 262-279 5-22 (38)
8 PF06697 DUF1191: Protein of u 92.8 0.18 3.9E-06 46.1 4.9 19 253-271 206-225 (278)
9 PF04478 Mid2: Mid2 like cell 92.6 0.065 1.4E-06 44.5 1.6 14 260-273 49-62 (154)
10 PF14610 DUF4448: Protein of u 92.0 0.18 3.9E-06 43.6 3.8 29 259-287 156-184 (189)
11 PF12877 DUF3827: Domain of un 89.2 0.31 6.7E-06 49.1 3.1 29 253-281 263-291 (684)
12 PF15102 TMEM154: TMEM154 prot 88.3 0.3 6.5E-06 40.3 1.9 12 262-273 58-69 (146)
13 PF01034 Syndecan: Syndecan do 87.3 0.18 3.9E-06 35.7 -0.0 12 262-273 11-22 (64)
14 PF15345 TMEM51: Transmembrane 86.8 2.4 5.1E-05 37.7 6.7 31 259-289 56-87 (233)
15 PTZ00046 rifin; Provisional 86.8 0.22 4.8E-06 47.0 0.3 28 263-290 318-345 (358)
16 TIGR01477 RIFIN variant surfac 86.2 0.25 5.4E-06 46.6 0.3 27 263-289 313-339 (353)
17 PF02480 Herpes_gE: Alphaherpe 85.5 0.25 5.5E-06 48.3 0.0 12 187-198 239-250 (439)
18 PF08374 Protocadherin: Protoc 85.1 1.2 2.6E-05 39.1 3.9 20 258-277 36-55 (221)
19 PF03302 VSP: Giardia variant- 84.5 0.75 1.6E-05 44.4 2.8 29 257-285 364-394 (397)
20 PF02439 Adeno_E3_CR2: Adenovi 81.1 0.58 1.3E-05 29.6 0.3 27 262-288 8-34 (38)
21 PF01299 Lamp: Lysosome-associ 79.3 0.41 8.9E-06 44.5 -1.1 32 260-291 270-303 (306)
22 PF13908 Shisa: Wnt and FGF in 78.6 1 2.3E-05 38.4 1.3 14 260-273 79-92 (179)
23 PHA03265 envelope glycoprotein 78.2 2.6 5.7E-05 39.7 3.8 28 260-287 347-376 (402)
24 PF01034 Syndecan: Syndecan do 76.0 0.83 1.8E-05 32.3 -0.1 20 259-278 12-31 (64)
25 PF05568 ASFV_J13L: African sw 75.6 1.7 3.7E-05 35.8 1.6 11 263-273 32-42 (189)
26 PF05454 DAG1: Dystroglycan (D 74.0 1 2.2E-05 41.6 0.0 10 277-286 165-174 (290)
27 PF11857 DUF3377: Domain of un 71.3 5.3 0.00011 29.1 3.1 21 258-278 27-47 (74)
28 TIGR01478 STEVOR variant surfa 70.4 1.8 4E-05 39.6 0.7 13 48-60 57-69 (295)
29 PF06365 CD34_antigen: CD34/Po 69.5 5.3 0.00012 34.9 3.4 29 260-288 100-130 (202)
30 PTZ00370 STEVOR; Provisional 69.2 2 4.4E-05 39.4 0.7 18 43-60 49-68 (296)
31 PF07172 GRP: Glycine rich pro 67.3 3.8 8.3E-05 31.4 1.8 18 5-22 3-20 (95)
32 PF04478 Mid2: Mid2 like cell 65.9 0.98 2.1E-05 37.6 -1.8 21 257-277 50-70 (154)
33 PF04689 S1FA: DNA binding pro 64.8 16 0.00034 25.9 4.3 32 254-285 7-40 (69)
34 PF12768 Rax2: Cortical protei 64.2 12 0.00025 34.6 4.7 19 255-273 222-240 (281)
35 PF01102 Glycophorin_A: Glycop 62.3 5.9 0.00013 31.9 2.1 17 258-274 66-82 (122)
36 PF08693 SKG6: Transmembrane a 61.2 6.6 0.00014 25.2 1.7 32 259-290 7-39 (40)
37 PF05545 FixQ: Cbb3-type cytoc 55.5 5.1 0.00011 26.6 0.6 15 277-291 24-38 (49)
38 KOG3653 Transforming growth fa 55.1 22 0.00048 35.2 5.0 8 225-232 124-131 (534)
39 PTZ00382 Variant-specific surf 54.9 4.7 0.0001 31.0 0.4 6 196-201 28-33 (96)
40 PF14914 LRRC37AB_C: LRRC37A/B 52.1 8.5 0.00018 31.9 1.4 22 260-281 120-141 (154)
41 TIGR02976 phageshock_pspB phag 51.4 15 0.00032 27.0 2.5 15 265-279 6-20 (75)
42 PLN03150 hypothetical protein; 50.1 16 0.00035 37.4 3.5 29 259-287 543-572 (623)
43 PF05393 Hum_adeno_E3A: Human 47.8 22 0.00047 26.9 2.9 12 262-273 32-43 (94)
44 PF03229 Alpha_GJ: Alphavirus 46.2 41 0.00088 26.8 4.3 23 257-279 80-102 (126)
45 COG3197 FixS Uncharacterized p 45.8 31 0.00066 24.0 3.2 30 262-292 3-32 (58)
46 PF14991 MLANA: Protein melan- 45.6 4.8 0.0001 31.8 -0.9 12 274-285 38-50 (118)
47 PF15012 DUF4519: Domain of un 44.3 8.2 0.00018 26.6 0.2 20 261-280 29-48 (56)
48 PF05337 CSF-1: Macrophage col 42.3 8.3 0.00018 35.2 0.0 29 262-290 227-255 (285)
49 PRK01844 hypothetical protein; 42.2 12 0.00026 27.2 0.8 25 263-287 5-29 (72)
50 PF07204 Orthoreo_P10: Orthore 42.2 14 0.00031 28.2 1.2 15 262-276 44-58 (98)
51 PF12768 Rax2: Cortical protei 41.5 15 0.00033 33.8 1.6 30 257-286 228-257 (281)
52 TIGR02595 PEP_exosort PEP-CTER 39.8 38 0.00083 19.4 2.5 9 279-287 15-23 (26)
53 PF01708 Gemini_mov: Geminivir 39.6 1.1E+02 0.0023 23.3 5.5 16 258-273 33-48 (91)
54 PF14316 DUF4381: Domain of un 39.0 22 0.00048 29.2 2.0 9 280-288 39-47 (146)
55 PF04971 Lysis_S: Lysis protei 39.0 15 0.00032 26.4 0.8 26 260-285 33-58 (68)
56 PF02009 Rifin_STEVOR: Rifin/s 38.9 6.7 0.00015 36.4 -1.2 31 260-290 260-290 (299)
57 PHA03283 envelope glycoprotein 38.7 22 0.00047 35.5 2.2 9 226-234 332-340 (542)
58 PTZ00087 thrombosponding-relat 37.3 44 0.00096 30.6 3.8 26 255-280 291-316 (340)
59 PRK00523 hypothetical protein; 36.7 13 0.00028 27.0 0.2 25 263-287 6-30 (72)
60 PF13908 Shisa: Wnt and FGF in 36.7 32 0.00069 29.1 2.7 18 260-277 75-92 (179)
61 PF05568 ASFV_J13L: African sw 36.3 13 0.00029 30.7 0.3 18 261-278 34-51 (189)
62 PF06667 PspB: Phage shock pro 36.2 37 0.0008 24.9 2.6 12 266-277 7-18 (75)
63 COG4736 CcoQ Cbb3-type cytochr 35.8 23 0.0005 24.8 1.4 16 277-292 24-39 (60)
64 PF12877 DUF3827: Domain of un 35.7 45 0.00098 34.2 3.9 35 256-290 262-297 (684)
65 PF07297 DPM2: Dolichol phosph 34.3 21 0.00046 26.4 1.1 27 263-289 46-77 (78)
66 COG3763 Uncharacterized protei 34.1 19 0.00041 26.0 0.8 15 274-288 16-30 (71)
67 PF13268 DUF4059: Protein of u 33.5 59 0.0013 23.6 3.2 10 280-289 27-36 (72)
68 PF15102 TMEM154: TMEM154 prot 32.5 7.5 0.00016 32.2 -1.7 6 284-289 83-88 (146)
69 COG3889 Predicted solute bindi 32.5 58 0.0012 34.2 4.1 27 260-286 844-871 (872)
70 PF10873 DUF2668: Protein of u 32.4 75 0.0016 26.3 4.0 13 261-273 62-74 (155)
71 PF03302 VSP: Giardia variant- 31.3 26 0.00055 33.9 1.4 34 257-290 360-396 (397)
72 KOG1226 Integrin beta subunit 30.7 62 0.0013 33.8 4.0 26 261-286 712-738 (783)
73 PHA03292 envelope glycoprotein 30.6 1.2E+02 0.0027 29.1 5.7 13 261-273 316-329 (413)
74 KOG1094 Discoidin domain recep 30.3 42 0.00091 34.4 2.7 8 182-189 290-297 (807)
75 PF05808 Podoplanin: Podoplani 29.5 18 0.00039 30.5 0.0 20 257-276 126-145 (162)
76 PF06024 DUF912: Nucleopolyhed 28.2 7.5 0.00016 30.1 -2.3 7 283-289 87-93 (101)
77 PF10883 DUF2681: Protein of u 27.0 46 0.00099 25.2 1.8 16 271-286 11-26 (87)
78 PHA03286 envelope glycoprotein 26.2 57 0.0012 32.0 2.8 9 226-234 324-332 (492)
79 TIGR03521 GldG gliding-associa 25.6 46 0.001 33.6 2.1 15 275-289 536-550 (552)
80 PF00558 Vpu: Vpu protein; In 25.4 16 0.00034 27.2 -0.9 8 263-270 7-14 (81)
81 PF11353 DUF3153: Protein of u 24.6 53 0.0011 28.6 2.1 18 268-285 188-205 (209)
82 PF15099 PIRT: Phosphoinositid 23.7 40 0.00087 27.2 1.0 9 185-193 24-32 (129)
83 PF05624 LSR: Lipolysis stimul 23.4 50 0.0011 21.8 1.2 18 262-279 5-22 (49)
84 PTZ00208 65 kDa invariant surf 23.1 9.1 0.0002 36.8 -3.2 25 263-287 390-414 (436)
85 KOG4482 Sarcoglycan complex, a 22.8 41 0.00089 32.2 1.1 14 217-230 234-247 (449)
86 PF03597 CcoS: Cytochrome oxid 22.6 73 0.0016 20.9 1.9 29 263-292 3-31 (45)
87 PF11884 DUF3404: Domain of un 21.6 65 0.0014 29.4 2.1 10 223-232 210-219 (262)
88 PF07213 DAP10: DAP10 membrane 21.6 23 0.0005 26.2 -0.7 7 262-268 36-42 (79)
89 PF00974 Rhabdo_glycop: Rhabdo 21.0 32 0.0007 34.4 0.0 15 181-195 340-354 (501)
90 PRK09458 pspB phage shock prot 20.8 91 0.002 22.9 2.3 14 264-277 5-18 (75)
91 PF12301 CD99L2: CD99 antigen 20.7 95 0.0021 26.4 2.8 6 265-270 116-121 (169)
92 PF08374 Protocadherin: Protoc 20.6 80 0.0017 27.9 2.4 16 262-277 43-58 (221)
93 PF05795 Plasmodium_Vir: Plasm 20.4 1.4E+02 0.003 27.4 4.1 7 122-128 116-122 (354)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.90 E-value=5.6e-24 Score=167.62 Aligned_cols=98 Identities=34% Similarity=0.557 Sum_probs=73.9
Q ss_pred ccccc-c-Cccc-CCCh--HHHHHHHHHHhhhccCC---CCceeeecCCCCCcEEEEEEcCCCCChhhhHHHHHHhHHhh
Q 022735 34 YKGCA-K-QFFQ-DPVS--SQALSALFGSLVSQSTK---TKFFKTSSGTGQASISGLFQCRGDLSNSDCYNCVSKLPTLS 105 (293)
Q Consensus 34 ~~~C~-~-~~~~-~~ns--~~NL~~ll~~L~s~~~~---~~f~~~s~G~~pd~vygl~~CrgD~~~~~C~~Cv~~a~~~~ 105 (293)
|+.|+ + .+++ +.++ +.||+.||.+|..+++. .+|+++..|.++++||||+||++|+++++|+.||+.|...+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 78899 3 3434 4455 99999999999988653 37998888999999999999999999999999999999999
Q ss_pred hhhcCCCcceEEEccceEEEEeeccc
Q 022735 106 DKQCGKTISARVQLLGCYMLYEVSGF 131 (293)
Q Consensus 106 ~~~C~~~~~a~i~~d~C~lRYsn~~f 131 (293)
.+.|+..++|++|++.|+|||++++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999987
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.87 E-value=1.6e-22 Score=159.26 Aligned_cols=85 Identities=36% Similarity=0.688 Sum_probs=68.9
Q ss_pred CchHHHHHHHHHHHHhhccccC--Cccccc----cCCeEEEEEEcCCCCChhhHHHHHHHHHHHHhhhCCCCccEEEEcC
Q 022735 151 GSGFEERRDAALQAMENGVVSG--HGFYTT----SYQSVFLLAQCEGDLGDSDCGDCVKGAVQRAQVECGSSISGQVYLH 224 (293)
Q Consensus 151 ~~~f~~~~~~~~~~l~~~~~~~--~~f~~~----~~~~vYgLaQCt~DLs~~~C~~CL~~a~~~i~~~C~~~~ggrv~~~ 224 (293)
++.|+.+++.++..+...++.+ .+|+++ ..++||||+||++||++++|+.||+.++.+++++|++++||+|+++
T Consensus 16 ~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~~ 95 (106)
T PF01657_consen 16 NSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWYD 95 (106)
T ss_dssp T-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEES
T ss_pred CchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEECC
Confidence 4569999999999998775533 356554 4679999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCC
Q 022735 225 KCFISYSYYPN 235 (293)
Q Consensus 225 ~C~lRYe~y~f 235 (293)
+|+||||+|+|
T Consensus 96 ~C~lRY~~~~F 106 (106)
T PF01657_consen 96 SCFLRYENYPF 106 (106)
T ss_dssp SEEEEEESS--
T ss_pred CEEEEEECCCC
Confidence 99999999998
No 3
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=97.29 E-value=0.00015 Score=46.43 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=16.7
Q ss_pred EEEEeehHHHHHHHHHHHHHHHHHhhh
Q 022735 262 TVAIILGGAAGVGFVVICLLFARNLVK 288 (293)
Q Consensus 262 iiaivv~~v~~~~~~~~~~~~~rr~~k 288 (293)
.+++++|++++++++.+.+++||||+|
T Consensus 14 a~~VvVPV~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 14 AVGVVVPVGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred EEEEEechHHHHHHHHHHhheEEeccC
Confidence 367778877666555555555666543
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=95.02 E-value=0.011 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=13.9
Q ss_pred CCCCCCcEEEEeehHHHHHHH
Q 022735 255 PGPNTGKTVAIILGGAAGVGF 275 (293)
Q Consensus 255 ~~~~~~~iiaivv~~v~~~~~ 275 (293)
++...+.|++|++++++.+++
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIG 79 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHH
T ss_pred cCccccceeehhHHHHHHHHH
Confidence 344556688888888877643
No 5
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=93.76 E-value=0.055 Score=41.69 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=14.0
Q ss_pred CCCCCCcEEEEeehHHHHH
Q 022735 255 PGPNTGKTVAIILGGAAGV 273 (293)
Q Consensus 255 ~~~~~~~iiaivv~~v~~~ 273 (293)
.+.+++.|++|+|++++++
T Consensus 61 ~~ls~gaiagi~vg~~~~v 79 (96)
T PTZ00382 61 SGLSTGAIAGISVAVVAVV 79 (96)
T ss_pred CCcccccEEEEEeehhhHH
Confidence 3456678999999877665
No 6
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=93.54 E-value=0.024 Score=52.57 Aligned_cols=29 Identities=31% Similarity=0.200 Sum_probs=16.7
Q ss_pred EEEEeehHHHHHHHHHHHHHHHHHhhhcc
Q 022735 262 TVAIILGGAAGVGFVVICLLFARNLVKKH 290 (293)
Q Consensus 262 iiaivv~~v~~~~~~~~~~~~~rr~~kk~ 290 (293)
|++.+++++++|+++++.|++||.||||+
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666555555556666666665443
No 7
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=93.40 E-value=0.068 Score=33.72 Aligned_cols=18 Identities=39% Similarity=0.863 Sum_probs=11.9
Q ss_pred EEEEeehHHHHHHHHHHH
Q 022735 262 TVAIILGGAAGVGFVVIC 279 (293)
Q Consensus 262 iiaivv~~v~~~~~~~~~ 279 (293)
.|+|++++++.++++++|
T Consensus 5 ~IaIIv~V~vg~~iiii~ 22 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIIC 22 (38)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 588888877766444433
No 8
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=92.78 E-value=0.18 Score=46.05 Aligned_cols=19 Identities=16% Similarity=-0.179 Sum_probs=10.2
Q ss_pred CCCCCCCCcEEEE-eehHHH
Q 022735 253 SGPGPNTGKTVAI-ILGGAA 271 (293)
Q Consensus 253 ~~~~~~~~~iiai-vv~~v~ 271 (293)
.+++...|++|.- ++++++
T Consensus 206 ~~~~~~~W~iv~g~~~G~~~ 225 (278)
T PF06697_consen 206 PRKRSWWWKIVVGVVGGVVL 225 (278)
T ss_pred cCCcceeEEEEEEehHHHHH
Confidence 3566667775443 444443
No 9
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=92.61 E-value=0.065 Score=44.49 Aligned_cols=14 Identities=7% Similarity=0.375 Sum_probs=9.3
Q ss_pred CcEEEEeehHHHHH
Q 022735 260 GKTVAIILGGAAGV 273 (293)
Q Consensus 260 ~~iiaivv~~v~~~ 273 (293)
..||++|||+-+++
T Consensus 49 nIVIGvVVGVGg~i 62 (154)
T PF04478_consen 49 NIVIGVVVGVGGPI 62 (154)
T ss_pred cEEEEEEecccHHH
Confidence 34788998864443
No 10
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=92.03 E-value=0.18 Score=43.56 Aligned_cols=29 Identities=21% Similarity=0.047 Sum_probs=17.7
Q ss_pred CCcEEEEeehHHHHHHHHHHHHHHHHHhh
Q 022735 259 TGKTVAIILGGAAGVGFVVICLLFARNLV 287 (293)
Q Consensus 259 ~~~iiaivv~~v~~~~~~~~~~~~~rr~~ 287 (293)
.+..++|+||++++++++++.++++++|+
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R~ 184 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNRK 184 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeecc
Confidence 44479999999887755544333333333
No 11
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=89.25 E-value=0.31 Score=49.11 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=18.9
Q ss_pred CCCCCCCCcEEEEeehHHHHHHHHHHHHH
Q 022735 253 SGPGPNTGKTVAIILGGAAGVGFVVICLL 281 (293)
Q Consensus 253 ~~~~~~~~~iiaivv~~v~~~~~~~~~~~ 281 (293)
...+++.|.|+++++|+.+++++++++++
T Consensus 263 ~s~~~NlWII~gVlvPv~vV~~Iiiil~~ 291 (684)
T PF12877_consen 263 KSPPNNLWIIAGVLVPVLVVLLIIIILYW 291 (684)
T ss_pred CCCCCCeEEEehHhHHHHHHHHHHHHHHH
Confidence 34567888888888887666544444333
No 12
>PF15102 TMEM154: TMEM154 protein family
Probab=88.32 E-value=0.3 Score=40.32 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=8.2
Q ss_pred EEEEeehHHHHH
Q 022735 262 TVAIILGGAAGV 273 (293)
Q Consensus 262 iiaivv~~v~~~ 273 (293)
++.|+||.|+++
T Consensus 58 iLmIlIP~VLLv 69 (146)
T PF15102_consen 58 ILMILIPLVLLV 69 (146)
T ss_pred EEEEeHHHHHHH
Confidence 788888855443
No 13
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=87.25 E-value=0.18 Score=35.67 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=0.0
Q ss_pred EEEEeehHHHHH
Q 022735 262 TVAIILGGAAGV 273 (293)
Q Consensus 262 iiaivv~~v~~~ 273 (293)
..++|.++|+.+
T Consensus 11 laavIaG~Vvgl 22 (64)
T PF01034_consen 11 LAAVIAGGVVGL 22 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 345555554443
No 14
>PF15345 TMEM51: Transmembrane protein 51
Probab=86.79 E-value=2.4 Score=37.72 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=17.6
Q ss_pred CCcEEEEeehHHHHH-HHHHHHHHHHHHhhhc
Q 022735 259 TGKTVAIILGGAAGV-GFVVICLLFARNLVKK 289 (293)
Q Consensus 259 ~~~iiaivv~~v~~~-~~~~~~~~~~rr~~kk 289 (293)
+.-+||.|+.++-++ +++.+|+.++.|||++
T Consensus 56 Kt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 56 KTFSVAYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred eeEEEEEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 334577776555433 5556777765555443
No 15
>PTZ00046 rifin; Provisional
Probab=86.76 E-value=0.22 Score=47.03 Aligned_cols=28 Identities=32% Similarity=0.228 Sum_probs=13.3
Q ss_pred EEEeehHHHHHHHHHHHHHHHHHhhhcc
Q 022735 263 VAIILGGAAGVGFVVICLLFARNLVKKH 290 (293)
Q Consensus 263 iaivv~~v~~~~~~~~~~~~~rr~~kk~ 290 (293)
++-|+++|++|+++++.|++.|-||||+
T Consensus 318 iaSiiAIvVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 318 IASIVAIVVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3334444444444455566555544443
No 16
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=86.20 E-value=0.25 Score=46.58 Aligned_cols=27 Identities=33% Similarity=0.214 Sum_probs=12.8
Q ss_pred EEEeehHHHHHHHHHHHHHHHHHhhhc
Q 022735 263 VAIILGGAAGVGFVVICLLFARNLVKK 289 (293)
Q Consensus 263 iaivv~~v~~~~~~~~~~~~~rr~~kk 289 (293)
++-++++|++|+++++.|++.|-||||
T Consensus 313 iaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 313 IASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333444444444445556655544444
No 17
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=85.47 E-value=0.25 Score=48.30 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=8.6
Q ss_pred EEcCCCCChhhH
Q 022735 187 AQCEGDLGDSDC 198 (293)
Q Consensus 187 aQCt~DLs~~~C 198 (293)
..|.++-.+.+|
T Consensus 239 ~~C~~~~~~~~C 250 (439)
T PF02480_consen 239 ANCSPSGWPRRC 250 (439)
T ss_dssp EEEBTTC-TTTT
T ss_pred cCCCCCCCcCCC
Confidence 679998777777
No 18
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=85.06 E-value=1.2 Score=39.12 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=11.9
Q ss_pred CCCcEEEEeehHHHHHHHHH
Q 022735 258 NTGKTVAIILGGAAGVGFVV 277 (293)
Q Consensus 258 ~~~~iiaivv~~v~~~~~~~ 277 (293)
....+||||.|+++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~ 55 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIF 55 (221)
T ss_pred ceeeeeeeecchhhhHHHHH
Confidence 34456788877766653333
No 19
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=84.50 E-value=0.75 Score=44.44 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=17.9
Q ss_pred CCCCcEEEEeehHHHHH-HHH-HHHHHHHHH
Q 022735 257 PNTGKTVAIILGGAAGV-GFV-VICLLFARN 285 (293)
Q Consensus 257 ~~~~~iiaivv~~v~~~-~~~-~~~~~~~rr 285 (293)
-+++.|.+|.|++|++| .|+ +++|||.-|
T Consensus 364 LstgaIaGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred ccccceeeeeehhHHHHHHHHHHHhhheeec
Confidence 35777899998877776 333 344444333
No 20
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=81.07 E-value=0.58 Score=29.57 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=14.1
Q ss_pred EEEEeehHHHHHHHHHHHHHHHHHhhh
Q 022735 262 TVAIILGGAAGVGFVVICLLFARNLVK 288 (293)
Q Consensus 262 iiaivv~~v~~~~~~~~~~~~~rr~~k 288 (293)
+|+-|+.+++++++.+++|.+.+||.+
T Consensus 8 IIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 444444555566566666554444433
No 21
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=79.33 E-value=0.41 Score=44.50 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=18.5
Q ss_pred CcEEEEeehHHHHH-HHH-HHHHHHHHHhhhccC
Q 022735 260 GKTVAIILGGAAGV-GFV-VICLLFARNLVKKHD 291 (293)
Q Consensus 260 ~~iiaivv~~v~~~-~~~-~~~~~~~rr~~kk~~ 291 (293)
..+|.|+||++++. +++ ++.|++.|||.+++|
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~gY 303 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRAGY 303 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccccccc
Confidence 45677878765543 333 345666666655544
No 22
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=78.63 E-value=1 Score=38.37 Aligned_cols=14 Identities=43% Similarity=0.411 Sum_probs=6.5
Q ss_pred CcEEEEeehHHHHH
Q 022735 260 GKTVAIILGGAAGV 273 (293)
Q Consensus 260 ~~iiaivv~~v~~~ 273 (293)
+.|++||+++|++|
T Consensus 79 ~iivgvi~~Vi~Iv 92 (179)
T PF13908_consen 79 GIIVGVICGVIAIV 92 (179)
T ss_pred eeeeehhhHHHHHH
Confidence 34445555444443
No 23
>PHA03265 envelope glycoprotein D; Provisional
Probab=78.20 E-value=2.6 Score=39.67 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=15.0
Q ss_pred CcEEEEeehH-HHHHH-HHHHHHHHHHHhh
Q 022735 260 GKTVAIILGG-AAGVG-FVVICLLFARNLV 287 (293)
Q Consensus 260 ~~iiaivv~~-v~~~~-~~~~~~~~~rr~~ 287 (293)
+..++|+++. |+.++ +-+|.|++|||||
T Consensus 347 ~~~~g~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 347 STFVGISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred CcccceEEccchhhhhhhhHHHHHHhhhhh
Confidence 3456666554 33343 3355566677765
No 24
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=75.97 E-value=0.83 Score=32.33 Aligned_cols=20 Identities=5% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCcEEEEeehHHHHHHHHHH
Q 022735 259 TGKTVAIILGGAAGVGFVVI 278 (293)
Q Consensus 259 ~~~iiaivv~~v~~~~~~~~ 278 (293)
.+.|.++|++.+.+++++++
T Consensus 12 aavIaG~Vvgll~ailLIlf 31 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILF 31 (64)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777766655544
No 25
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=75.56 E-value=1.7 Score=35.81 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=4.8
Q ss_pred EEEeehHHHHH
Q 022735 263 VAIILGGAAGV 273 (293)
Q Consensus 263 iaivv~~v~~~ 273 (293)
+.|++++|+.+
T Consensus 32 ~tILiaIvVli 42 (189)
T PF05568_consen 32 YTILIAIVVLI 42 (189)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 26
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=74.02 E-value=1 Score=41.58 Aligned_cols=10 Identities=20% Similarity=0.763 Sum_probs=0.0
Q ss_pred HHHHHHHHHh
Q 022735 277 VICLLFARNL 286 (293)
Q Consensus 277 ~~~~~~~rr~ 286 (293)
++|+|++|||
T Consensus 165 Ia~icyrrkR 174 (290)
T PF05454_consen 165 IACICYRRKR 174 (290)
T ss_dssp ----------
T ss_pred HHHHhhhhhh
Confidence 3344433333
No 27
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=71.29 E-value=5.3 Score=29.13 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=14.5
Q ss_pred CCCcEEEEeehHHHHHHHHHH
Q 022735 258 NTGKTVAIILGGAAGVGFVVI 278 (293)
Q Consensus 258 ~~~~iiaivv~~v~~~~~~~~ 278 (293)
++.++++|++|.+.++.++++
T Consensus 27 ~~~~avaVviPl~L~LCiLvl 47 (74)
T PF11857_consen 27 GTVNAVAVVIPLVLLLCILVL 47 (74)
T ss_pred CceeEEEEeHHHHHHHHHHHH
Confidence 345579999998877744443
No 28
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=70.38 E-value=1.8 Score=39.57 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhh
Q 022735 48 SQALSALFGSLVS 60 (293)
Q Consensus 48 ~~NL~~ll~~L~s 60 (293)
+.-++.+...+-.
T Consensus 57 DpEmK~iid~~n~ 69 (295)
T TIGR01478 57 DPELKEIIDKLNE 69 (295)
T ss_pred cHHHHHHHHHHhH
Confidence 5556666666644
No 29
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=69.48 E-value=5.3 Score=34.95 Aligned_cols=29 Identities=7% Similarity=-0.080 Sum_probs=15.8
Q ss_pred CcEEEEeehH--HHHHHHHHHHHHHHHHhhh
Q 022735 260 GKTVAIILGG--AAGVGFVVICLLFARNLVK 288 (293)
Q Consensus 260 ~~iiaivv~~--v~~~~~~~~~~~~~rr~~k 288 (293)
..+|+||+.+ .++++++..+|+++.||..
T Consensus 100 ~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 100 PTLIALVTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred eEEEehHHhhHHHHHHHHHHHHHHhhhhccC
Confidence 3567776655 2222344445667766653
No 30
>PTZ00370 STEVOR; Provisional
Probab=69.23 E-value=2 Score=39.40 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=12.2
Q ss_pred cCCCh--HHHHHHHHHHhhh
Q 022735 43 QDPVS--SQALSALFGSLVS 60 (293)
Q Consensus 43 ~~~ns--~~NL~~ll~~L~s 60 (293)
|.|+. ..-++.+...+-.
T Consensus 49 ~~p~YdNDpemK~i~d~~n~ 68 (296)
T PTZ00370 49 HNPHYHNDPELKEIIDKMNE 68 (296)
T ss_pred CCCCCCCcHHHHHHHHHHhH
Confidence 34555 6778888887755
No 31
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=67.28 E-value=3.8 Score=31.45 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=9.0
Q ss_pred chhHHHHHHHHHHHHhhc
Q 022735 5 SKPQFLLTLSLLCFFTNL 22 (293)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (293)
||.+++|.|+|.++||+.
T Consensus 3 SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 676665545443334433
No 32
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=65.87 E-value=0.98 Score=37.60 Aligned_cols=21 Identities=19% Similarity=-0.040 Sum_probs=13.7
Q ss_pred CCCCcEEEEeehHHHHHHHHH
Q 022735 257 PNTGKTVAIILGGAAGVGFVV 277 (293)
Q Consensus 257 ~~~~~iiaivv~~v~~~~~~~ 277 (293)
.-.|.+|+|-+|+++++++++
T Consensus 50 IVIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALV 70 (154)
T ss_pred EEEEEEecccHHHHHHHHHhh
Confidence 467777888777776554444
No 33
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.78 E-value=16 Score=25.88 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=19.7
Q ss_pred CCCCCCCcEEEEeehHHHHHHHHH--HHHHHHHH
Q 022735 254 GPGPNTGKTVAIILGGAAGVGFVV--ICLLFARN 285 (293)
Q Consensus 254 ~~~~~~~~iiaivv~~v~~~~~~~--~~~~~~rr 285 (293)
.++-+.+.||.|||+.+++++++. +.+..|++
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred ccCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 355677889999888776654442 23344444
No 34
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=64.20 E-value=12 Score=34.55 Aligned_cols=19 Identities=32% Similarity=0.216 Sum_probs=11.1
Q ss_pred CCCCCCcEEEEeehHHHHH
Q 022735 255 PGPNTGKTVAIILGGAAGV 273 (293)
Q Consensus 255 ~~~~~~~iiaivv~~v~~~ 273 (293)
++...+.||.|.+++.+.+
T Consensus 222 ~~l~~G~VVlIslAiALG~ 240 (281)
T PF12768_consen 222 KKLSRGFVVLISLAIALGT 240 (281)
T ss_pred ccccceEEEEEehHHHHHH
Confidence 4445666777766654443
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=62.32 E-value=5.9 Score=31.87 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=8.7
Q ss_pred CCCcEEEEeehHHHHHH
Q 022735 258 NTGKTVAIILGGAAGVG 274 (293)
Q Consensus 258 ~~~~iiaivv~~v~~~~ 274 (293)
-.+.|++++.|++..++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 34455566555544443
No 36
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=61.18 E-value=6.6 Score=25.21 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCcEEEEeehHHHHHHHHH-HHHHHHHHhhhcc
Q 022735 259 TGKTVAIILGGAAGVGFVV-ICLLFARNLVKKH 290 (293)
Q Consensus 259 ~~~iiaivv~~v~~~~~~~-~~~~~~rr~~kk~ 290 (293)
..+.++|.+++++-++.++ +..+++...+||+
T Consensus 7 ~~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 7 NSNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred CCceEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 3457999999888775544 4456777777765
No 37
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=55.48 E-value=5.1 Score=26.59 Aligned_cols=15 Identities=27% Similarity=0.007 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhhccC
Q 022735 277 VICLLFARNLVKKHD 291 (293)
Q Consensus 277 ~~~~~~~rr~~kk~~ 291 (293)
.+.++.+++++||+.
T Consensus 24 gi~~w~~~~~~k~~~ 38 (49)
T PF05545_consen 24 GIVIWAYRPRNKKRF 38 (49)
T ss_pred HHHHHHHcccchhhH
Confidence 334444454444443
No 38
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=55.12 E-value=22 Score=35.19 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=5.5
Q ss_pred eeEEEEec
Q 022735 225 KCFISYSY 232 (293)
Q Consensus 225 ~C~lRYe~ 232 (293)
-|+.+|+.
T Consensus 124 ~CN~n~s~ 131 (534)
T KOG3653|consen 124 FCNANFSH 131 (534)
T ss_pred cccCCccc
Confidence 58877764
No 39
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=54.92 E-value=4.7 Score=30.98 Aligned_cols=6 Identities=33% Similarity=1.387 Sum_probs=3.4
Q ss_pred hhHHHH
Q 022735 196 SDCGDC 201 (293)
Q Consensus 196 ~~C~~C 201 (293)
+.|..|
T Consensus 28 ~~C~~C 33 (96)
T PTZ00382 28 GNCKSC 33 (96)
T ss_pred CCCcCC
Confidence 356665
No 40
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=52.05 E-value=8.5 Score=31.88 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=13.3
Q ss_pred CcEEEEeehHHHHHHHHHHHHH
Q 022735 260 GKTVAIILGGAAGVGFVVICLL 281 (293)
Q Consensus 260 ~~iiaivv~~v~~~~~~~~~~~ 281 (293)
..|+||.|.+|+.++++++|+.
T Consensus 120 klilaisvtvv~~iliii~CLi 141 (154)
T PF14914_consen 120 KLILAISVTVVVMILIIIFCLI 141 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3567877766555555556654
No 41
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=51.43 E-value=15 Score=26.98 Aligned_cols=15 Identities=20% Similarity=-0.057 Sum_probs=7.7
Q ss_pred EeehHHHHHHHHHHH
Q 022735 265 IILGGAAGVGFVVIC 279 (293)
Q Consensus 265 ivv~~v~~~~~~~~~ 279 (293)
+++|+++.+++++..
T Consensus 6 l~~Pliif~ifVap~ 20 (75)
T TIGR02976 6 LAIPLIIFVIFVAPL 20 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666555444433
No 42
>PLN03150 hypothetical protein; Provisional
Probab=50.09 E-value=16 Score=37.39 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=14.6
Q ss_pred CCcEEEEeehHHHHHHHHH-HHHHHHHHhh
Q 022735 259 TGKTVAIILGGAAGVGFVV-ICLLFARNLV 287 (293)
Q Consensus 259 ~~~iiaivv~~v~~~~~~~-~~~~~~rr~~ 287 (293)
.+.++++++++++++++++ +.+++||||+
T Consensus 543 ~~~~i~~~~~~~~~~l~~~~~~~~~~~~r~ 572 (623)
T PLN03150 543 VGAKIGIAFGVSVAFLFLVICAMCWWKRRQ 572 (623)
T ss_pred CceEEEEEhHHHHHHHHHHHHHhhheeehh
Confidence 3446777777665543333 3334445443
No 43
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=47.83 E-value=22 Score=26.88 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=5.2
Q ss_pred EEEEeehHHHHH
Q 022735 262 TVAIILGGAAGV 273 (293)
Q Consensus 262 iiaivv~~v~~~ 273 (293)
-+.|-..+|+.+
T Consensus 32 ~Lgm~~lvI~~i 43 (94)
T PF05393_consen 32 NLGMWFLVICGI 43 (94)
T ss_pred ccchhHHHHHHH
Confidence 344444444444
No 44
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=46.24 E-value=41 Score=26.77 Aligned_cols=23 Identities=13% Similarity=0.455 Sum_probs=14.7
Q ss_pred CCCCcEEEEeehHHHHHHHHHHH
Q 022735 257 PNTGKTVAIILGGAAGVGFVVIC 279 (293)
Q Consensus 257 ~~~~~iiaivv~~v~~~~~~~~~ 279 (293)
.....++..|++.+.++.+.+++
T Consensus 80 ~p~d~aLp~VIGGLcaL~LaamG 102 (126)
T PF03229_consen 80 PPVDFALPLVIGGLCALTLAAMG 102 (126)
T ss_pred CCcccchhhhhhHHHHHHHHHHH
Confidence 33456788888887766555443
No 45
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=45.79 E-value=31 Score=23.97 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=16.0
Q ss_pred EEEEeehHHHHHHHHHHHHHHHHHhhhccCC
Q 022735 262 TVAIILGGAAGVGFVVICLLFARNLVKKHDD 292 (293)
Q Consensus 262 iiaivv~~v~~~~~~~~~~~~~rr~~kk~~~ 292 (293)
++.|.+|+.++++++.+..+ ++-.|.+++|
T Consensus 3 ~l~~Lipvsi~l~~v~l~~f-lWavksgQyD 32 (58)
T COG3197 3 ILYILIPVSILLGAVGLGAF-LWAVKSGQYD 32 (58)
T ss_pred eeeeHHHHHHHHHHHHHHHH-HHhcccCCcc
Confidence 56677776554444444334 4444555554
No 46
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=45.57 E-value=4.8 Score=31.81 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=0.0
Q ss_pred HHHHH-HHHHHHH
Q 022735 274 GFVVI-CLLFARN 285 (293)
Q Consensus 274 ~~~~~-~~~~~rr 285 (293)
+++++ |+++.||
T Consensus 38 iLLliGCWYckRR 50 (118)
T PF14991_consen 38 ILLLIGCWYCKRR 50 (118)
T ss_dssp -------------
T ss_pred HHHHHhheeeeec
Confidence 34444 4444333
No 47
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=44.28 E-value=8.2 Score=26.58 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=13.9
Q ss_pred cEEEEeehHHHHHHHHHHHH
Q 022735 261 KTVAIILGGAAGVGFVVICL 280 (293)
Q Consensus 261 ~iiaivv~~v~~~~~~~~~~ 280 (293)
++..||+|++++++++++.|
T Consensus 29 kv~tVVlP~l~~~~~~Ivv~ 48 (56)
T PF15012_consen 29 KVFTVVLPTLAAVFLFIVVF 48 (56)
T ss_pred hheeEehhHHHHHHHHHhhe
Confidence 47889999888775554443
No 48
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=42.34 E-value=8.3 Score=35.24 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=0.0
Q ss_pred EEEEeehHHHHHHHHHHHHHHHHHhhhcc
Q 022735 262 TVAIILGGAAGVGFVVICLLFARNLVKKH 290 (293)
Q Consensus 262 iiaivv~~v~~~~~~~~~~~~~rr~~kk~ 290 (293)
+.-+.||.|++|++-+-+++|+|||+|.+
T Consensus 227 vf~lLVPSiILVLLaVGGLLfYr~rrRs~ 255 (285)
T PF05337_consen 227 VFYLLVPSIILVLLAVGGLLFYRRRRRSH 255 (285)
T ss_dssp -----------------------------
T ss_pred cccccccchhhhhhhccceeeeccccccc
Confidence 45555666555544444555555555443
No 49
>PRK01844 hypothetical protein; Provisional
Probab=42.23 E-value=12 Score=27.20 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=12.9
Q ss_pred EEEeehHHHHHHHHHHHHHHHHHhh
Q 022735 263 VAIILGGAAGVGFVVICLLFARNLV 287 (293)
Q Consensus 263 iaivv~~v~~~~~~~~~~~~~rr~~ 287 (293)
++|+++++++++=++++|++.|+--
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~ 29 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYM 29 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444444455666666543
No 50
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=42.20 E-value=14 Score=28.17 Aligned_cols=15 Identities=13% Similarity=-0.226 Sum_probs=6.8
Q ss_pred EEEEeehHHHHHHHH
Q 022735 262 TVAIILGGAAGVGFV 276 (293)
Q Consensus 262 iiaivv~~v~~~~~~ 276 (293)
.+|..-+++++++++
T Consensus 44 yLA~GGG~iLilIii 58 (98)
T PF07204_consen 44 YLAAGGGLILILIII 58 (98)
T ss_pred HhhccchhhhHHHHH
Confidence 445544444444333
No 51
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=41.47 E-value=15 Score=33.80 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=16.4
Q ss_pred CCCCcEEEEeehHHHHHHHHHHHHHHHHHh
Q 022735 257 PNTGKTVAIILGGAAGVGFVVICLLFARNL 286 (293)
Q Consensus 257 ~~~~~iiaivv~~v~~~~~~~~~~~~~rr~ 286 (293)
.-...-+||.+++|++++++.+.+.+.|||
T Consensus 228 ~VVlIslAiALG~v~ll~l~Gii~~~~~r~ 257 (281)
T PF12768_consen 228 FVVLISLAIALGTVFLLVLIGIILAYIRRR 257 (281)
T ss_pred EEEEEehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444777777777665554433333443
No 52
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=39.78 E-value=38 Score=19.39 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 022735 279 CLLFARNLV 287 (293)
Q Consensus 279 ~~~~~rr~~ 287 (293)
.++..||||
T Consensus 15 ~~~~~rrrk 23 (26)
T TIGR02595 15 GFLLLRRRR 23 (26)
T ss_pred HHHHHhhcc
Confidence 334444433
No 53
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=39.60 E-value=1.1e+02 Score=23.28 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=7.0
Q ss_pred CCCcEEEEeehHHHHH
Q 022735 258 NTGKTVAIILGGAAGV 273 (293)
Q Consensus 258 ~~~~iiaivv~~v~~~ 273 (293)
..++++.|++.+.+++
T Consensus 33 ~ws~vv~v~i~~lvaV 48 (91)
T PF01708_consen 33 PWSRVVEVAIFTLVAV 48 (91)
T ss_pred cceeEeeeeehHHHHH
Confidence 3444544444443333
No 54
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=39.00 E-value=22 Score=29.16 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=3.6
Q ss_pred HHHHHHhhh
Q 022735 280 LLFARNLVK 288 (293)
Q Consensus 280 ~~~~rr~~k 288 (293)
+..+||+++
T Consensus 39 ~~~~r~~~~ 47 (146)
T PF14316_consen 39 WRLWRRWRR 47 (146)
T ss_pred HHHHHHHHc
Confidence 333444443
No 55
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=38.95 E-value=15 Score=26.41 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=12.8
Q ss_pred CcEEEEeehHHHHHHHHHHHHHHHHH
Q 022735 260 GKTVAIILGGAAGVGFVVICLLFARN 285 (293)
Q Consensus 260 ~~iiaivv~~v~~~~~~~~~~~~~rr 285 (293)
+..|+|+.+++..++-.+.-++|.+|
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~k 58 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKIK 58 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhhh
Confidence 44566665555444433444454333
No 56
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.92 E-value=6.7 Score=36.45 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=13.9
Q ss_pred CcEEEEeehHHHHHHHHHHHHHHHHHhhhcc
Q 022735 260 GKTVAIILGGAAGVGFVVICLLFARNLVKKH 290 (293)
Q Consensus 260 ~~iiaivv~~v~~~~~~~~~~~~~rr~~kk~ 290 (293)
..+|||+|-+++.|++.++..++++++-||+
T Consensus 260 aSiiaIliIVLIMvIIYLILRYRRKKKmkKK 290 (299)
T PF02009_consen 260 ASIIAILIIVLIMVIIYLILRYRRKKKMKKK 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4456665544333333344444443444443
No 57
>PHA03283 envelope glycoprotein E; Provisional
Probab=38.73 E-value=22 Score=35.45 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=5.8
Q ss_pred eEEEEecCC
Q 022735 226 CFISYSYYP 234 (293)
Q Consensus 226 C~lRYe~y~ 234 (293)
|.++|..++
T Consensus 332 fVv~yNgHv 340 (542)
T PHA03283 332 FVLLYNGHP 340 (542)
T ss_pred EEEEECCee
Confidence 777775443
No 58
>PTZ00087 thrombosponding-related protein; Provisional
Probab=37.34 E-value=44 Score=30.57 Aligned_cols=26 Identities=19% Similarity=0.027 Sum_probs=17.3
Q ss_pred CCCCCCcEEEEeehHHHHHHHHHHHH
Q 022735 255 PGPNTGKTVAIILGGAAGVGFVVICL 280 (293)
Q Consensus 255 ~~~~~~~iiaivv~~v~~~~~~~~~~ 280 (293)
+.+++-+|+.|++|+|+++.++.+.+
T Consensus 291 ~~sst~~i~~i~~piv~vi~v~~ily 316 (340)
T PTZ00087 291 KESSTFKILIILLPIVLIICVMGILY 316 (340)
T ss_pred CCCCcceEeeeehhHHHHHHHHHHHH
Confidence 44556678888899887774444433
No 59
>PRK00523 hypothetical protein; Provisional
Probab=36.71 E-value=13 Score=27.01 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=12.1
Q ss_pred EEEeehHHHHHHHHHHHHHHHHHhh
Q 022735 263 VAIILGGAAGVGFVVICLLFARNLV 287 (293)
Q Consensus 263 iaivv~~v~~~~~~~~~~~~~rr~~ 287 (293)
++|.+.++++++=+++.|++.|+--
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~ 30 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMF 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333345666666543
No 60
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=36.69 E-value=32 Score=29.14 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=11.8
Q ss_pred CcEEEEeehHHHHHHHHH
Q 022735 260 GKTVAIILGGAAGVGFVV 277 (293)
Q Consensus 260 ~~iiaivv~~v~~~~~~~ 277 (293)
+.++.|+|++|++|++++
T Consensus 75 ~~~~~iivgvi~~Vi~Iv 92 (179)
T PF13908_consen 75 YFITGIIVGVICGVIAIV 92 (179)
T ss_pred cceeeeeeehhhHHHHHH
Confidence 446778888877664443
No 61
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=36.35 E-value=13 Score=30.68 Aligned_cols=18 Identities=11% Similarity=0.050 Sum_probs=12.3
Q ss_pred cEEEEeehHHHHHHHHHH
Q 022735 261 KTVAIILGGAAGVGFVVI 278 (293)
Q Consensus 261 ~iiaivv~~v~~~~~~~~ 278 (293)
..|+|||+++++++++.+
T Consensus 34 ILiaIvVliiiiivli~l 51 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYL 51 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 458999988777654443
No 62
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=36.18 E-value=37 Score=24.90 Aligned_cols=12 Identities=17% Similarity=-0.039 Sum_probs=5.5
Q ss_pred eehHHHHHHHHH
Q 022735 266 ILGGAAGVGFVV 277 (293)
Q Consensus 266 vv~~v~~~~~~~ 277 (293)
++|.++.+++++
T Consensus 7 ~~plivf~ifVa 18 (75)
T PF06667_consen 7 FVPLIVFMIFVA 18 (75)
T ss_pred HHHHHHHHHHHH
Confidence 445444444443
No 63
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.83 E-value=23 Score=24.81 Aligned_cols=16 Identities=19% Similarity=0.002 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhccCC
Q 022735 277 VICLLFARNLVKKHDD 292 (293)
Q Consensus 277 ~~~~~~~rr~~kk~~~ 292 (293)
.+.++.+|+.+|+..|
T Consensus 24 avi~~ayr~~~K~~~d 39 (60)
T COG4736 24 AVIYFAYRPGKKGEFD 39 (60)
T ss_pred HHHHHHhcccchhhHH
Confidence 3344445555555443
No 64
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=35.65 E-value=45 Score=34.15 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCCCCcEEEEeehHHHHH-HHHHHHHHHHHHhhhcc
Q 022735 256 GPNTGKTVAIILGGAAGV-GFVVICLLFARNLVKKH 290 (293)
Q Consensus 256 ~~~~~~iiaivv~~v~~~-~~~~~~~~~~rr~~kk~ 290 (293)
..+...-++|++++++-+ ++++|+.++.++.++|.
T Consensus 262 ~~s~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~ 297 (684)
T PF12877_consen 262 AKSPPNNLWIIAGVLVPVLVVLLIIIILYWKLCRKN 297 (684)
T ss_pred CCCCCCCeEEEehHhHHHHHHHHHHHHHHHHHhccc
Confidence 344445689999987766 55566777888876553
No 65
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=34.27 E-value=21 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.039 Sum_probs=15.0
Q ss_pred EEEeehHHHHHHHH-----HHHHHHHHHhhhc
Q 022735 263 VAIILGGAAGVGFV-----VICLLFARNLVKK 289 (293)
Q Consensus 263 iaivv~~v~~~~~~-----~~~~~~~rr~~kk 289 (293)
-||.+|+++.++.+ .+.+..+|.+|||
T Consensus 46 yAi~lP~~lll~~~~~vg~f~g~vmik~~~kk 77 (78)
T PF07297_consen 46 YAIILPIFLLLLGLSGVGTFLGYVMIKSKKKK 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 57777876654222 2334556666655
No 66
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.12 E-value=19 Score=25.98 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhhh
Q 022735 274 GFVVICLLFARNLVK 288 (293)
Q Consensus 274 ~~~~~~~~~~rr~~k 288 (293)
+-++.+|++.||--+
T Consensus 16 ~G~~~G~fiark~~~ 30 (71)
T COG3763 16 AGLIGGFFIARKQMK 30 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444556777666543
No 67
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=33.51 E-value=59 Score=23.56 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=4.8
Q ss_pred HHHHHHhhhc
Q 022735 280 LLFARNLVKK 289 (293)
Q Consensus 280 ~~~~rr~~kk 289 (293)
+.+||.++||
T Consensus 27 wi~~Ra~~~~ 36 (72)
T PF13268_consen 27 WILWRALRKK 36 (72)
T ss_pred HHHHHHHHcC
Confidence 3445554444
No 68
>PF15102 TMEM154: TMEM154 protein family
Probab=32.45 E-value=7.5 Score=32.19 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=2.3
Q ss_pred HHhhhc
Q 022735 284 RNLVKK 289 (293)
Q Consensus 284 rr~~kk 289 (293)
||+|.|
T Consensus 83 kRkr~K 88 (146)
T PF15102_consen 83 KRKRTK 88 (146)
T ss_pred eecccC
Confidence 333333
No 69
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=32.45 E-value=58 Score=34.19 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=13.3
Q ss_pred CcEEEEeehHHHHH-HHHHHHHHHHHHh
Q 022735 260 GKTVAIILGGAAGV-GFVVICLLFARNL 286 (293)
Q Consensus 260 ~~iiaivv~~v~~~-~~~~~~~~~~rr~ 286 (293)
+++.+-|++.++++ +|.++-++++|||
T Consensus 844 ttt~~~i~g~i~iiv~LaAla~lLrRRr 871 (872)
T COG3889 844 TTTGGGICGPIVIIVGLAALALLLRRRR 871 (872)
T ss_pred cccccccchHHHHHHHHHHHHHHHHhhc
Confidence 33455555555333 4445555554443
No 70
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=32.38 E-value=75 Score=26.34 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=8.6
Q ss_pred cEEEEeehHHHHH
Q 022735 261 KTVAIILGGAAGV 273 (293)
Q Consensus 261 ~iiaivv~~v~~~ 273 (293)
.|-+||.++|.++
T Consensus 62 AIaGIVfgiVfim 74 (155)
T PF10873_consen 62 AIAGIVFGIVFIM 74 (155)
T ss_pred eeeeeehhhHHHH
Confidence 3567777777655
No 71
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=31.31 E-value=26 Score=33.93 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=21.5
Q ss_pred CCCCcEEEEeehHHHHHHHHHH--H-HHHHHHhhhcc
Q 022735 257 PNTGKTVAIILGGAAGVGFVVI--C-LLFARNLVKKH 290 (293)
Q Consensus 257 ~~~~~iiaivv~~v~~~~~~~~--~-~~~~rr~~kk~ 290 (293)
++.+..-+.|++|.|++|+++- + |+.||-..|+|
T Consensus 360 n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 360 NKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred ccccccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 4455566777787666655543 3 56688777664
No 72
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=30.66 E-value=62 Score=33.82 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=16.7
Q ss_pred cEEEEeehHHHHHHHHHHH-HHHHHHh
Q 022735 261 KTVAIILGGAAGVGFVVIC-LLFARNL 286 (293)
Q Consensus 261 ~iiaivv~~v~~~~~~~~~-~~~~rr~ 286 (293)
.|++|++++|++++++.+. +++|+-+
T Consensus 712 ~~~~i~lgvv~~ivligl~llliwkll 738 (783)
T KOG1226|consen 712 NILAIVLGVVAGIVLIGLALLLIWKLL 738 (783)
T ss_pred cEeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999888877555444 3445543
No 73
>PHA03292 envelope glycoprotein I; Provisional
Probab=30.57 E-value=1.2e+02 Score=29.10 Aligned_cols=13 Identities=38% Similarity=0.399 Sum_probs=6.4
Q ss_pred cEE-EEeehHHHHH
Q 022735 261 KTV-AIILGGAAGV 273 (293)
Q Consensus 261 ~ii-aivv~~v~~~ 273 (293)
+++ .||+|+.+++
T Consensus 316 k~~a~ivip~~~~~ 329 (413)
T PHA03292 316 KIVAMIVIPTACVV 329 (413)
T ss_pred cEEEEEEhHHHHHH
Confidence 444 4556654433
No 74
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=30.30 E-value=42 Score=34.38 Aligned_cols=8 Identities=13% Similarity=0.123 Sum_probs=3.8
Q ss_pred eEEEEEEc
Q 022735 182 SVFLLAQC 189 (293)
Q Consensus 182 ~vYgLaQC 189 (293)
+|.+-++|
T Consensus 290 ri~~~~~~ 297 (807)
T KOG1094|consen 290 RIFGGVEV 297 (807)
T ss_pred ccccceeE
Confidence 34444455
No 75
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=29.49 E-value=18 Score=30.48 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=0.0
Q ss_pred CCCCcEEEEeehHHHHHHHH
Q 022735 257 PNTGKTVAIILGGAAGVGFV 276 (293)
Q Consensus 257 ~~~~~iiaivv~~v~~~~~~ 276 (293)
-.+..+++|||++++++.++
T Consensus 126 L~T~tLVGIIVGVLlaIG~i 145 (162)
T PF05808_consen 126 LSTVTLVGIIVGVLLAIGFI 145 (162)
T ss_dssp --------------------
T ss_pred cceeeeeeehhhHHHHHHHH
Confidence 34556789999988777444
No 76
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=28.16 E-value=7.5 Score=30.09 Aligned_cols=7 Identities=29% Similarity=0.192 Sum_probs=3.0
Q ss_pred HHHhhhc
Q 022735 283 ARNLVKK 289 (293)
Q Consensus 283 ~rr~~kk 289 (293)
.|.|+++
T Consensus 87 LRer~~~ 93 (101)
T PF06024_consen 87 LRERQKS 93 (101)
T ss_pred Eeccccc
Confidence 4444433
No 77
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.03 E-value=46 Score=25.15 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 022735 271 AGVGFVVICLLFARNL 286 (293)
Q Consensus 271 ~~~~~~~~~~~~~rr~ 286 (293)
++++++++.|.+|+-+
T Consensus 11 ~~v~~~i~~y~~~k~~ 26 (87)
T PF10883_consen 11 GAVVALILAYLWWKVK 26 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 78
>PHA03286 envelope glycoprotein E; Provisional
Probab=26.23 E-value=57 Score=32.02 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=5.8
Q ss_pred eEEEEecCC
Q 022735 226 CFISYSYYP 234 (293)
Q Consensus 226 C~lRYe~y~ 234 (293)
|.++|.-++
T Consensus 324 fVl~yNGH~ 332 (492)
T PHA03286 324 VVALYNGRP 332 (492)
T ss_pred EEEEECCcc
Confidence 677776554
No 79
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=25.58 E-value=46 Score=33.58 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhc
Q 022735 275 FVVICLLFARNLVKK 289 (293)
Q Consensus 275 ~~~~~~~~~rr~~kk 289 (293)
++++++++|++||||
T Consensus 536 ~l~~G~~~~~~Rrr~ 550 (552)
T TIGR03521 536 LLLFGLSFTYIRKRK 550 (552)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344555556555544
No 80
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.41 E-value=16 Score=27.22 Aligned_cols=8 Identities=38% Similarity=0.094 Sum_probs=2.7
Q ss_pred EEEeehHH
Q 022735 263 VAIILGGA 270 (293)
Q Consensus 263 iaivv~~v 270 (293)
++|+.-+|
T Consensus 7 ~~iialiv 14 (81)
T PF00558_consen 7 LAIIALIV 14 (81)
T ss_dssp -HHHHHHH
T ss_pred HHHHHHHH
Confidence 34433333
No 81
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=24.57 E-value=53 Score=28.65 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 022735 268 GGAAGVGFVVICLLFARN 285 (293)
Q Consensus 268 ~~v~~~~~~~~~~~~~rr 285 (293)
+++++++++++.++++++
T Consensus 188 G~v~I~~l~~~~~~l~~~ 205 (209)
T PF11353_consen 188 GTVLIVLLILLGFLLRRR 205 (209)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344434444445554433
No 82
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=23.68 E-value=40 Score=27.23 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=4.3
Q ss_pred EEEEcCCCC
Q 022735 185 LLAQCEGDL 193 (293)
Q Consensus 185 gLaQCt~DL 193 (293)
+-+-|.|-.
T Consensus 24 ~~~~~ip~v 32 (129)
T PF15099_consen 24 ASTLCIPSV 32 (129)
T ss_pred eeEEEeecc
Confidence 334455544
No 83
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=23.35 E-value=50 Score=21.81 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=7.5
Q ss_pred EEEEeehHHHHHHHHHHH
Q 022735 262 TVAIILGGAAGVGFVVIC 279 (293)
Q Consensus 262 iiaivv~~v~~~~~~~~~ 279 (293)
++.|+++.+..++++.++
T Consensus 5 V~~iilg~~ll~~LigiC 22 (49)
T PF05624_consen 5 VVLIILGALLLLLLIGIC 22 (49)
T ss_pred EeHHHHHHHHHHHHHHHH
Confidence 344444444333333343
No 84
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=23.06 E-value=9.1 Score=36.79 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=10.6
Q ss_pred EEEeehHHHHHHHHHHHHHHHHHhh
Q 022735 263 VAIILGGAAGVGFVVICLLFARNLV 287 (293)
Q Consensus 263 iaivv~~v~~~~~~~~~~~~~rr~~ 287 (293)
+|+.||+++++++-+.+|.+.||||
T Consensus 390 ~avl~p~~il~~~~~~~~~~v~rrr 414 (436)
T PTZ00208 390 LAVLVPAIILAIIAVAFFIMVKRRR 414 (436)
T ss_pred HHHHHHHHHHHHHHHHhheeeeecc
Confidence 4445554433322233344445544
No 85
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=22.75 E-value=41 Score=32.23 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=10.3
Q ss_pred ccEEEEcCeeEEEE
Q 022735 217 ISGQVYLHKCFISY 230 (293)
Q Consensus 217 ~ggrv~~~~C~lRY 230 (293)
-+-....+||+++-
T Consensus 234 fap~F~vDWCnv~l 247 (449)
T KOG4482|consen 234 FAPTFPVDWCNVAL 247 (449)
T ss_pred cCCcceeeeeeeEe
Confidence 34456678999987
No 86
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=22.62 E-value=73 Score=20.90 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=12.6
Q ss_pred EEEeehHHHHHHHHHHHHHHHHHhhhccCC
Q 022735 263 VAIILGGAAGVGFVVICLLFARNLVKKHDD 292 (293)
Q Consensus 263 iaivv~~v~~~~~~~~~~~~~rr~~kk~~~ 292 (293)
|.+.+|+..+++++++..++ +..|+++.|
T Consensus 3 l~~lip~sl~l~~~~l~~f~-Wavk~GQfd 31 (45)
T PF03597_consen 3 LYILIPVSLILGLIALAAFL-WAVKSGQFD 31 (45)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHccCCCC
Confidence 44455554444333333333 333444443
No 87
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=21.62 E-value=65 Score=29.38 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=8.1
Q ss_pred cCeeEEEEec
Q 022735 223 LHKCFISYSY 232 (293)
Q Consensus 223 ~~~C~lRYe~ 232 (293)
+.+|.+||.+
T Consensus 210 ~~sC~~r~gN 219 (262)
T PF11884_consen 210 GNSCFVRYGN 219 (262)
T ss_pred CCcccceecc
Confidence 5789999984
No 88
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=21.59 E-value=23 Score=26.20 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=3.2
Q ss_pred EEEEeeh
Q 022735 262 TVAIILG 268 (293)
Q Consensus 262 iiaivv~ 268 (293)
..+||++
T Consensus 36 LaGiV~~ 42 (79)
T PF07213_consen 36 LAGIVAA 42 (79)
T ss_pred HHHHHHH
Confidence 3444444
No 89
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=20.99 E-value=32 Score=34.35 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=9.4
Q ss_pred CeEEEEEEcCCCCCh
Q 022735 181 QSVFLLAQCEGDLGD 195 (293)
Q Consensus 181 ~~vYgLaQCt~DLs~ 195 (293)
...|--+-+..+..+
T Consensus 340 ~~~Y~~V~~~~~i~~ 354 (501)
T PF00974_consen 340 DTHYKRVDIWGPIIP 354 (501)
T ss_dssp EEEEEEEEESSSEES
T ss_pred EEEEEEEeccCcccc
Confidence 456777777766544
No 90
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.79 E-value=91 Score=22.86 Aligned_cols=14 Identities=21% Similarity=0.017 Sum_probs=7.2
Q ss_pred EEeehHHHHHHHHH
Q 022735 264 AIILGGAAGVGFVV 277 (293)
Q Consensus 264 aivv~~v~~~~~~~ 277 (293)
.+++|+++.+++++
T Consensus 5 fl~~PliiF~ifVa 18 (75)
T PRK09458 5 FLAIPLTIFVLFVA 18 (75)
T ss_pred HHHHhHHHHHHHHH
Confidence 34556555554444
No 91
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=20.66 E-value=95 Score=26.43 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=2.2
Q ss_pred EeehHH
Q 022735 265 IILGGA 270 (293)
Q Consensus 265 ivv~~v 270 (293)
+|.+||
T Consensus 116 ~IaGIv 121 (169)
T PF12301_consen 116 TIAGIV 121 (169)
T ss_pred hhhhHH
Confidence 333333
No 92
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=20.63 E-value=80 Score=27.93 Aligned_cols=16 Identities=31% Similarity=0.075 Sum_probs=6.2
Q ss_pred EEEEeehHHHHHHHHH
Q 022735 262 TVAIILGGAAGVGFVV 277 (293)
Q Consensus 262 iiaivv~~v~~~~~~~ 277 (293)
|||-++.+|+++++.+
T Consensus 43 iVAG~~tVILVI~i~v 58 (221)
T PF08374_consen 43 IVAGIMTVILVIFIVV 58 (221)
T ss_pred eecchhhhHHHHHHHH
Confidence 3433333334443333
No 93
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=20.38 E-value=1.4e+02 Score=27.43 Aligned_cols=7 Identities=29% Similarity=0.709 Sum_probs=3.3
Q ss_pred eEEEEee
Q 022735 122 CYMLYEV 128 (293)
Q Consensus 122 C~lRYsn 128 (293)
|..-|..
T Consensus 116 C~~~~~~ 122 (354)
T PF05795_consen 116 CKPYYKY 122 (354)
T ss_pred Ccccccc
Confidence 5444444
Done!