Query 022735
Match_columns 293
No_of_seqs 218 out of 1493
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 99.9 7.1E-27 2.4E-31 183.7 10.8 101 30-131 3-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 99.9 5.8E-27 2E-31 184.2 10.1 102 29-131 2-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 2.3E-24 7.8E-29 169.3 10.8 99 137-235 3-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 1.2E-23 4.1E-28 165.2 10.8 99 137-235 3-108 (108)
5 2ks1_B Epidermal growth factor 95.8 0.0031 1.1E-07 40.5 1.6 29 261-289 12-41 (44)
6 2l2t_A Receptor tyrosine-prote 95.5 0.0035 1.2E-07 40.2 0.8 32 258-289 8-40 (44)
7 2jwa_A Receptor tyrosine-prote 95.5 0.0031 1.1E-07 40.3 0.5 28 262-289 14-41 (44)
8 2k1k_A Ephrin type-A receptor 93.5 0.0093 3.2E-07 37.0 -0.8 29 257-285 8-37 (38)
9 2l2t_A Receptor tyrosine-prote 77.1 1 3.4E-05 28.7 1.5 31 261-291 8-39 (44)
10 1iij_A ERBB-2 receptor protein 67.0 0.28 9.7E-06 29.6 -2.7 6 281-286 29-34 (35)
11 2l34_A TYRO protein tyrosine k 66.5 0.61 2.1E-05 27.8 -1.3 26 260-285 7-32 (33)
12 2lx0_A Membrane fusion protein 62.3 5.5 0.00019 22.5 2.2 23 267-289 10-32 (32)
13 1q55_A EP-cadherin, C-cadherin 53.6 2.8 9.4E-05 43.2 0.0 15 259-273 704-718 (880)
14 2knc_B Integrin beta-3; transm 53.4 2.9 9.9E-05 29.9 0.1 23 262-284 10-33 (79)
15 1cd1_A CD1, MCD1D.1; immunolog 50.0 3.4 0.00012 37.0 0.0 13 75-87 91-103 (315)
16 2llm_A Amyloid beta A4 protein 55.4 3.4 0.00012 25.9 0.0 28 258-285 15-42 (43)
17 1s7q_A H-2KB, H-2 class I hist 49.4 3.5 0.00012 37.6 0.0 9 262-270 283-291 (348)
18 2l9u_A Receptor tyrosine-prote 42.9 24 0.00083 21.0 2.9 9 280-288 27-35 (40)
19 1afo_A Glycophorin A; integral 31.8 14 0.00049 22.5 0.7 12 262-273 12-23 (40)
20 4b19_A PEPA1; toxin, toxin apo 28.4 32 0.0011 19.8 1.8 6 268-273 10-15 (30)
21 2klu_A T-cell surface glycopro 27.1 35 0.0012 23.4 2.1 12 265-276 12-23 (70)
22 2k9j_B Integrin beta-3; transm 25.8 11 0.00038 23.6 -0.6 15 262-276 9-23 (43)
23 2kv5_A FST, putative uncharact 23.8 16 0.00056 21.4 -0.0 13 265-277 8-20 (33)
24 1kxf_A Sindbis virus capsid pr 20.1 37 0.0013 29.2 1.4 38 225-269 193-233 (264)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.94 E-value=7.1e-27 Score=183.66 Aligned_cols=101 Identities=30% Similarity=0.547 Sum_probs=89.0
Q ss_pred ccccccccccCcccCCCh--HHHHHHHHHHhhhccCCC--CceeeecC-CCCCcEEEEEEcCCCCChhhhHHHHHHhHHh
Q 022735 30 TTLVYKGCAKQFFQDPVS--SQALSALFGSLVSQSTKT--KFFKTSSG-TGQASISGLFQCRGDLSNSDCYNCVSKLPTL 104 (293)
Q Consensus 30 ~~~~~~~C~~~~~~~~ns--~~NL~~ll~~L~s~~~~~--~f~~~s~G-~~pd~vygl~~CrgD~~~~~C~~Cv~~a~~~ 104 (293)
+.++++.|+++ ++++++ ++||+.||++|+++++.. +|++...| .++|+||||+|||+|+++++|+.||+.|+.+
T Consensus 3 t~~v~~~Cn~~-~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 3a2e_A 3 TAFVSSACNTQ-KIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCEEEEEECSS-BCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cceeeeecCCC-ccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 67899999765 455676 999999999999987643 35565555 4569999999999999999999999999999
Q ss_pred hhhhcCCCcceEEEccceEEEEeeccc
Q 022735 105 SDKQCGKTISARVQLLGCYMLYEVSGF 131 (293)
Q Consensus 105 ~~~~C~~~~~a~i~~d~C~lRYsn~~f 131 (293)
+.+.||++++|++|+|.|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 999999999999999999999999987
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.94 E-value=5.8e-27 Score=184.20 Aligned_cols=102 Identities=28% Similarity=0.514 Sum_probs=92.1
Q ss_pred cccccccccccCcccCCCh--HHHHHHHHHHhhhccCC--CCceeeecCCCC-CcEEEEEEcCCCCChhhhHHHHHHhHH
Q 022735 29 YTTLVYKGCAKQFFQDPVS--SQALSALFGSLVSQSTK--TKFFKTSSGTGQ-ASISGLFQCRGDLSNSDCYNCVSKLPT 103 (293)
Q Consensus 29 ~~~~~~~~C~~~~~~~~ns--~~NL~~ll~~L~s~~~~--~~f~~~s~G~~p-d~vygl~~CrgD~~~~~C~~Cv~~a~~ 103 (293)
+++++++.|++ +++++++ ++||+.||++|+++++. .+|+++++|.+| ++||||+|||||+++++|+.||+.|+.
T Consensus 2 ~t~~~~~~C~~-~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 2e79_A 2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceeeeeeCCC-CeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHH
Confidence 46789999998 5566777 99999999999988653 358888888776 799999999999999999999999999
Q ss_pred hhhhhcCCCcceEEEccceEEEEeeccc
Q 022735 104 LSDKQCGKTISARVQLLGCYMLYEVSGF 131 (293)
Q Consensus 104 ~~~~~C~~~~~a~i~~d~C~lRYsn~~f 131 (293)
++.+.||++++|++|++.|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 9999999999999999999999999987
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.91 E-value=2.3e-24 Score=169.30 Aligned_cols=99 Identities=23% Similarity=0.478 Sum_probs=84.1
Q ss_pred cccceeecCCCcc-CCchHHHHHHHHHHHHhhccccCC-ccccc-----cCCeEEEEEEcCCCCChhhHHHHHHHHHHHH
Q 022735 137 LEMLFKTCGSTNV-AGSGFEERRDAALQAMENGVVSGH-GFYTT-----SYQSVFLLAQCEGDLGDSDCGDCVKGAVQRA 209 (293)
Q Consensus 137 ~~~~~~~~~~~~~-~~~~f~~~~~~~~~~l~~~~~~~~-~f~~~-----~~~~vYgLaQCt~DLs~~~C~~CL~~a~~~i 209 (293)
+..+++.|+..++ .++.|+.+++.++..|...++.+. .|++. +.++||||+||+||+++++|+.||+.++.++
T Consensus 3 t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 3a2e_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred cceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3456678987777 467899999999999987654332 34332 3478999999999999999999999999999
Q ss_pred hhhCCCCccEEEEcCeeEEEEecCCC
Q 022735 210 QVECGSSISGQVYLHKCFISYSYYPN 235 (293)
Q Consensus 210 ~~~C~~~~ggrv~~~~C~lRYe~y~f 235 (293)
+++|++++||+||+++|+||||+|+|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999998
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.90 E-value=1.2e-23 Score=165.21 Aligned_cols=99 Identities=23% Similarity=0.475 Sum_probs=84.2
Q ss_pred cccceeecCCCcc-CCchHHHHHHHHHHHHhhccccC-Cccccc-----cCCeEEEEEEcCCCCChhhHHHHHHHHHHHH
Q 022735 137 LEMLFKTCGSTNV-AGSGFEERRDAALQAMENGVVSG-HGFYTT-----SYQSVFLLAQCEGDLGDSDCGDCVKGAVQRA 209 (293)
Q Consensus 137 ~~~~~~~~~~~~~-~~~~f~~~~~~~~~~l~~~~~~~-~~f~~~-----~~~~vYgLaQCt~DLs~~~C~~CL~~a~~~i 209 (293)
+.+.++.|+..++ .++.|+.+++.++..|...++.+ .+|+++ ..++||||+||+|||++++|+.||+.++.++
T Consensus 3 t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 2e79_A 3 TAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp CCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred ceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Confidence 4567788987666 45789999999999997665432 245442 1368999999999999999999999999999
Q ss_pred hhhCCCCccEEEEcCeeEEEEecCCC
Q 022735 210 QVECGSSISGQVYLHKCFISYSYYPN 235 (293)
Q Consensus 210 ~~~C~~~~ggrv~~~~C~lRYe~y~f 235 (293)
+++|++++||+||+++|++|||+|+|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999997
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=95.84 E-value=0.0031 Score=40.46 Aligned_cols=29 Identities=14% Similarity=-0.019 Sum_probs=13.4
Q ss_pred cEEEEeehHHHHH-HHHHHHHHHHHHhhhc
Q 022735 261 KTVAIILGGAAGV-GFVVICLLFARNLVKK 289 (293)
Q Consensus 261 ~iiaivv~~v~~~-~~~~~~~~~~rr~~kk 289 (293)
.|.+-||+.++++ ++++..++++|||++|
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 3444455544444 3333344555555544
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=95.47 E-value=0.0035 Score=40.15 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=14.8
Q ss_pred CCCcEEEEeehHHHHHHH-HHHHHHHHHHhhhc
Q 022735 258 NTGKTVAIILGGAAGVGF-VVICLLFARNLVKK 289 (293)
Q Consensus 258 ~~~~iiaivv~~v~~~~~-~~~~~~~~rr~~kk 289 (293)
+++.|.+-||+.++++++ ++..++++|||+++
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 333444555554444433 33344555555444
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=95.46 E-value=0.0031 Score=40.34 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=12.6
Q ss_pred EEEEeehHHHHHHHHHHHHHHHHHhhhc
Q 022735 262 TVAIILGGAAGVGFVVICLLFARNLVKK 289 (293)
Q Consensus 262 iiaivv~~v~~~~~~~~~~~~~rr~~kk 289 (293)
|+++||++++++++.+..++++|||+.|
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 5666777433333333333344444433
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=93.46 E-value=0.0093 Score=37.02 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=17.4
Q ss_pred CCCCcEEEEeehHHHHHHHH-HHHHHHHHH
Q 022735 257 PNTGKTVAIILGGAAGVGFV-VICLLFARN 285 (293)
Q Consensus 257 ~~~~~iiaivv~~v~~~~~~-~~~~~~~rr 285 (293)
-+.+.|..||+++++.++++ .+.+++|||
T Consensus 8 ls~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 8 LTGGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 34556778888877766444 344445544
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=77.12 E-value=1 Score=28.67 Aligned_cols=31 Identities=32% Similarity=0.301 Sum_probs=15.8
Q ss_pred cEEEEeehHHHHHHHHHHHHH-HHHHhhhccC
Q 022735 261 KTVAIILGGAAGVGFVVICLL-FARNLVKKHD 291 (293)
Q Consensus 261 ~iiaivv~~v~~~~~~~~~~~-~~rr~~kk~~ 291 (293)
.+-+|+.++|..++++++... .|--.|+|+.
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 334455554444556666544 3455555543
No 10
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=67.02 E-value=0.28 Score=29.62 Aligned_cols=6 Identities=0% Similarity=0.268 Sum_probs=2.6
Q ss_pred HHHHHh
Q 022735 281 LFARNL 286 (293)
Q Consensus 281 ~~~rr~ 286 (293)
+++|||
T Consensus 29 ~~iRRr 34 (35)
T 1iij_A 29 ILIKRR 34 (35)
T ss_dssp HHHHHC
T ss_pred eEEeec
Confidence 334543
No 11
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=66.45 E-value=0.61 Score=27.77 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=14.9
Q ss_pred CcEEEEeehHHHHHHHHHHHHHHHHH
Q 022735 260 GKTVAIILGGAAGVGFVVICLLFARN 285 (293)
Q Consensus 260 ~~iiaivv~~v~~~~~~~~~~~~~rr 285 (293)
+.+.+||++-+++++++.+.+++++|
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ceEEeEeHHHHHHHHHHHHHHhheec
Confidence 44566777766666555544444443
No 12
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=62.31 E-value=5.5 Score=22.47 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=14.6
Q ss_pred ehHHHHHHHHHHHHHHHHHhhhc
Q 022735 267 LGGAAGVGFVVICLLFARNLVKK 289 (293)
Q Consensus 267 v~~v~~~~~~~~~~~~~rr~~kk 289 (293)
.+.|+.+.++++.|++++-..||
T Consensus 10 aglvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 10 AGLVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555556777777777665544
No 13
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=53.57 E-value=2.8 Score=43.23 Aligned_cols=15 Identities=13% Similarity=-0.122 Sum_probs=0.0
Q ss_pred CCcEEEEeehHHHHH
Q 022735 259 TGKTVAIILGGAAGV 273 (293)
Q Consensus 259 ~~~iiaivv~~v~~~ 273 (293)
.+.+|+|++++++++
T Consensus 704 ~~aii~il~~~~~ll 718 (880)
T 1q55_A 704 LPIILVILGSVLALL 718 (880)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344667766665544
No 14
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.37 E-value=2.9 Score=29.92 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=11.3
Q ss_pred EEEEeehHHHHHHHH-HHHHHHHH
Q 022735 262 TVAIILGGAAGVGFV-VICLLFAR 284 (293)
Q Consensus 262 iiaivv~~v~~~~~~-~~~~~~~r 284 (293)
+.+||+++++.++++ ++++++||
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555333 23334444
No 15
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=49.97 E-value=3.4 Score=37.02 Aligned_cols=13 Identities=15% Similarity=-0.049 Sum_probs=8.7
Q ss_pred CCCcEEEEEEcCC
Q 022735 75 GQASISGLFQCRG 87 (293)
Q Consensus 75 ~pd~vygl~~Crg 87 (293)
++-+...+.-|.=
T Consensus 91 g~ht~Q~~~gCe~ 103 (315)
T 1cd1_A 91 YPIEIQLSAGCEM 103 (315)
T ss_dssp CCEEEEEEEEEEE
T ss_pred CcEEEEEEEEEEE
Confidence 3556777887863
No 16
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=55.39 E-value=3.4 Score=25.89 Aligned_cols=28 Identities=25% Similarity=0.571 Sum_probs=13.8
Q ss_pred CCCcEEEEeehHHHHHHHHHHHHHHHHH
Q 022735 258 NTGKTVAIILGGAAGVGFVVICLLFARN 285 (293)
Q Consensus 258 ~~~~iiaivv~~v~~~~~~~~~~~~~rr 285 (293)
+.+.+|.+.++.|++..++++..++.||
T Consensus 15 srga~iGL~v~gVai~~vIVvsl~mlRr 42 (43)
T 2llm_A 15 NKGAIIGLMVGGVVIATVIVITLVMLKK 42 (43)
Confidence 3444566665555544444444444444
No 17
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=49.43 E-value=3.5 Score=37.62 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=0.0
Q ss_pred EEEEeehHH
Q 022735 262 TVAIILGGA 270 (293)
Q Consensus 262 iiaivv~~v 270 (293)
||+||++++
T Consensus 283 ~~~i~~~~~ 291 (348)
T 1s7q_A 283 NMATVAVLV 291 (348)
T ss_dssp ---------
T ss_pred EEEEEeehh
Confidence 455555543
No 18
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=42.94 E-value=24 Score=20.98 Aligned_cols=9 Identities=22% Similarity=0.335 Sum_probs=4.7
Q ss_pred HHHHHHhhh
Q 022735 280 LLFARNLVK 288 (293)
Q Consensus 280 ~~~~rr~~k 288 (293)
|+.||-|+.
T Consensus 27 flywrgrrh 35 (40)
T 2l9u_A 27 FLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHH
T ss_pred eEEEccccc
Confidence 455665553
No 19
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=31.79 E-value=14 Score=22.52 Aligned_cols=12 Identities=50% Similarity=0.645 Sum_probs=6.1
Q ss_pred EEEEeehHHHHH
Q 022735 262 TVAIILGGAAGV 273 (293)
Q Consensus 262 iiaivv~~v~~~ 273 (293)
++.|+.++.+.+
T Consensus 12 i~lII~~vmaGi 23 (40)
T 1afo_A 12 ITLIIFGVMAGV 23 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 445555555544
No 20
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=28.44 E-value=32 Score=19.77 Aligned_cols=6 Identities=17% Similarity=0.113 Sum_probs=2.3
Q ss_pred hHHHHH
Q 022735 268 GGAAGV 273 (293)
Q Consensus 268 ~~v~~~ 273 (293)
|+++..
T Consensus 10 ~visGc 15 (30)
T 4b19_A 10 PVISGC 15 (30)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 333333
No 21
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=27.12 E-value=35 Score=23.38 Aligned_cols=12 Identities=50% Similarity=0.913 Sum_probs=8.0
Q ss_pred EeehHHHHHHHH
Q 022735 265 IILGGAAGVGFV 276 (293)
Q Consensus 265 ivv~~v~~~~~~ 276 (293)
||++.++.++++
T Consensus 12 ivlGg~~~lll~ 23 (70)
T 2klu_A 12 IVLGGVAGLLLF 23 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
Confidence 788877766433
No 22
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=25.83 E-value=11 Score=23.58 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=8.2
Q ss_pred EEEEeehHHHHHHHH
Q 022735 262 TVAIILGGAAGVGFV 276 (293)
Q Consensus 262 iiaivv~~v~~~~~~ 276 (293)
+.+|+.++++.++++
T Consensus 9 ~~~Iv~gvi~~ivli 23 (43)
T 2k9j_B 9 ILVVLLSVMGAILLI 23 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHH
Confidence 456666665554333
No 23
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=23.78 E-value=16 Score=21.44 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=6.2
Q ss_pred EeehHHHHHHHHH
Q 022735 265 IILGGAAGVGFVV 277 (293)
Q Consensus 265 ivv~~v~~~~~~~ 277 (293)
|+.|+++.+++.+
T Consensus 8 IIaPivVGvvl~L 20 (33)
T 2kv5_A 8 VIAPIFVGLVLEM 20 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555543333
No 24
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A
Probab=20.14 E-value=37 Score=29.19 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=22.5
Q ss_pred eeEEEEecCCCCCCCCCCCCCCCCCCCCCCCC---CCCCcEEEEeehH
Q 022735 225 KCFISYSYYPNGVPRRQSSSSSSSSPDSSGPG---PNTGKTVAIILGG 269 (293)
Q Consensus 225 ~C~lRYe~y~f~~~~~~~~~p~~~~~~~~~~~---~~~~~iiaivv~~ 269 (293)
.=-++||.-.|-.|..... ++++++ .+.|++||||++.
T Consensus 193 hGaVqy~~grftvp~G~G~-------~GDSGRpI~DN~GrVVaIVLGG 233 (264)
T 1kxf_A 193 HGAVQYSGGRFTIPRGVGG-------RGDSGRPIMDNSGRVVAIVLGG 233 (264)
T ss_dssp TEEEEEETTEEEEETTSCC-------TTCTTCEEECTTSCEEEEEEEE
T ss_pred cceEEeeCCeEEecccCCC-------CCCCCCccccCCCcEEEEEecC
Confidence 3457899888844432211 111221 4678999999975
Done!