Query 022735
Match_columns 293
No_of_seqs 218 out of 1493
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 10:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022735.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022735hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 24.9 23 0.0017 24.2 2.8 12 278-289 47-58 (100)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 17.7 6 0.00044 27.0 -1.8 11 279-289 37-47 (91)
3 d1ep5a_ b.47.1.3 (A:) Viral ca 13.8 47 0.0034 24.2 2.3 45 218-269 78-125 (156)
4 d1vcpa_ b.47.1.3 (A:) Viral ca 13.3 48 0.0035 24.0 2.3 45 218-269 72-119 (149)
5 d1wyka_ b.47.1.3 (A:) Viral ca 13.3 49 0.0036 23.9 2.3 45 218-269 74-121 (152)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.4 57 0.0042 22.3 2.2 11 279-289 54-64 (107)
7 d3d4ub1 g.9.1.3 (B:1-37) Carbo 8.4 36 0.0026 18.5 -0.0 25 96-122 2-27 (37)
8 d1cl4a_ g.40.1.1 (A:) Nucleoca 7.6 27 0.002 18.9 -0.7 19 106-124 2-20 (32)
9 d1r3jc_ f.14.1.1 (C:) Potassiu 7.0 1.6E+02 0.012 19.3 3.1 9 283-291 95-103 (103)
10 d1g25a_ g.44.1.1 (A:) TFIIH Ma 6.6 79 0.0058 19.2 1.1 17 94-110 31-47 (65)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=24.86 E-value=23 Score=24.16 Aligned_cols=12 Identities=25% Similarity=0.044 Sum_probs=6.2
Q ss_pred HHHHHHHHhhhc
Q 022735 278 ICLLFARNLVKK 289 (293)
Q Consensus 278 ~~~~~~rr~~kk 289 (293)
+.++++|.|+||
T Consensus 47 l~~~~~~~r~~~ 58 (100)
T d3dtub2 47 ILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHBTTT
T ss_pred HHHHhhhhhccC
Confidence 344455655554
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=17.68 E-value=6 Score=27.02 Aligned_cols=11 Identities=0% Similarity=-0.245 Sum_probs=4.5
Q ss_pred HHHHHHHhhhc
Q 022735 279 CLLFARNLVKK 289 (293)
Q Consensus 279 ~~~~~rr~~kk 289 (293)
.++.+|-|++|
T Consensus 37 ~~~~~ryR~~~ 47 (91)
T d1fftb2 37 VGFAWKYRASN 47 (91)
T ss_dssp HTTTTTTTTST
T ss_pred HhhheeeeccC
Confidence 33344444433
No 3
>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]}
Probab=13.75 E-value=47 Score=24.21 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=24.6
Q ss_pred cEEEEcCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCC---CCCCCcEEEEeehH
Q 022735 218 SGQVYLHKCFISYSYYPNGVPRRQSSSSSSSSPDSSGP---GPNTGKTVAIILGG 269 (293)
Q Consensus 218 ggrv~~~~C~lRYe~y~f~~~~~~~~~p~~~~~~~~~~---~~~~~~iiaivv~~ 269 (293)
.|-.-...=.++||.-.|-.|..... |..++ -.+.+++++||++.
T Consensus 78 eg~YNwhhGavq~~~grftip~g~g~-------~GDSGRpi~DN~GkVVaIVLGG 125 (156)
T d1ep5a_ 78 QGYYSWHHGAVQYENGRFTVPKGVGA-------KGDSGRPILDNQGRVVAIVLGG 125 (156)
T ss_dssp SEEEEETTEEEEEETTEEEEETTCCC-------TTCTTCEEECTTSCEEEEEEEE
T ss_pred CceeccccceEEEeCCeEEeccCCCC-------CCCCCCccCcCCCcEEEEEecC
Confidence 34333334457888777744332211 11112 24678999999874
No 4
>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]}
Probab=13.34 E-value=48 Score=23.96 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=24.3
Q ss_pred cEEEEcCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCC---CCCCCcEEEEeehH
Q 022735 218 SGQVYLHKCFISYSYYPNGVPRRQSSSSSSSSPDSSGP---GPNTGKTVAIILGG 269 (293)
Q Consensus 218 ggrv~~~~C~lRYe~y~f~~~~~~~~~p~~~~~~~~~~---~~~~~~iiaivv~~ 269 (293)
.|-.-...=.++||.-.|-.|..... +..++ -.++++++|||++.
T Consensus 72 eg~YNwhhGavq~~~grft~p~g~g~-------~GDSGRpi~DN~GkVVaIVLGG 119 (149)
T d1vcpa_ 72 EGHYNWHHGAVQYSGGRFTIPTGAGK-------PGDSGRPIFDNKGRVVAIVLGG 119 (149)
T ss_dssp SEEEEETTEEEEEETTEEEEETTSCC-------TTCTTCEEECTTSCEEEEEEEE
T ss_pred CceeccccceEEEeCCeEEeccccCC-------CCCCCCccCcCCCCEEEEEecC
Confidence 33333334457888777743322211 11111 24678999999874
No 5
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}
Probab=13.31 E-value=49 Score=23.94 Aligned_cols=45 Identities=31% Similarity=0.424 Sum_probs=24.7
Q ss_pred cEEEEcCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCC---CCCCCcEEEEeehH
Q 022735 218 SGQVYLHKCFISYSYYPNGVPRRQSSSSSSSSPDSSGP---GPNTGKTVAIILGG 269 (293)
Q Consensus 218 ggrv~~~~C~lRYe~y~f~~~~~~~~~p~~~~~~~~~~---~~~~~~iiaivv~~ 269 (293)
.|-.-...=.++|+.-.|-.|..... |..++ -.+.++++|||++.
T Consensus 74 eg~YNwhhGavq~~~grftip~g~g~-------~GDSGRpi~DN~GrVVaIVLGG 121 (152)
T d1wyka_ 74 EGFYNWHHGAVQYSGGRFTIPRGVGG-------RGDSGRPIMDNSGRVVAIVLGG 121 (152)
T ss_dssp SEEEEETTEEEEEETTEEEEETTTCC-------TTCTTCEEECTTSCEEEEEEEE
T ss_pred CceeccccceEEEeCCeEEecccCCC-------CCCCCCccCcCCCcEEEEEecC
Confidence 34333344567888777744332211 11112 24678899999874
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=11.41 E-value=57 Score=22.31 Aligned_cols=11 Identities=9% Similarity=-0.004 Sum_probs=5.0
Q ss_pred HHHHHHHhhhc
Q 022735 279 CLLFARNLVKK 289 (293)
Q Consensus 279 ~~~~~rr~~kk 289 (293)
.+..+|-|+++
T Consensus 54 ~~~~~~~r~~~ 64 (107)
T d3ehbb2 54 LICIVRFNRRA 64 (107)
T ss_dssp HHHHHHSBTTT
T ss_pred HHHhhhhhccC
Confidence 34445544444
No 7
>d3d4ub1 g.9.1.3 (B:1-37) Carboxypeptidase inhibitor {Tick (Rhipicephalus bursa) [TaxId: 67831]}
Probab=8.41 E-value=36 Score=18.50 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=16.1
Q ss_pred HHHHHhHHhh-hhhcCCCcceEEEccce
Q 022735 96 NCVSKLPTLS-DKQCGKTISARVQLLGC 122 (293)
Q Consensus 96 ~Cv~~a~~~~-~~~C~~~~~a~i~~d~C 122 (293)
+||...+.-+ ..+||. ++++-|.+|
T Consensus 2 ~cvs~gfgc~p~s~cp~--e~rlsy~gc 27 (37)
T d3d4ub1 2 ECVSKGFGCLPQSDCPQ--EARLSYGGC 27 (37)
T ss_dssp HHHHTTCEEECGGGSCG--GGEECCSCC
T ss_pred cccccCcCcCccccCCH--hHeeccCCc
Confidence 4666555443 346885 788888877
No 8
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=7.61 E-value=27 Score=18.88 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=15.4
Q ss_pred hhhcCCCcceEEEccceEE
Q 022735 106 DKQCGKTISARVQLLGCYM 124 (293)
Q Consensus 106 ~~~C~~~~~a~i~~d~C~l 124 (293)
...||.=+.++.|-.+|.-
T Consensus 2 P~lCPrC~kG~HWa~~Crs 20 (32)
T d1cl4a_ 2 PGLCPRCKRGKHWANECKS 20 (32)
T ss_dssp CCSCSSCSSCSSCSTTCCC
T ss_pred CccCccccCcchHHHHhhh
Confidence 4579998899999988853
No 9
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.02 E-value=1.6e+02 Score=19.28 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.9
Q ss_pred HHHhhhccC
Q 022735 283 ARNLVKKHD 291 (293)
Q Consensus 283 ~rr~~kk~~ 291 (293)
.++++||+|
T Consensus 95 ~~~~~rr~h 103 (103)
T d1r3jc_ 95 GREQERRGH 103 (103)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhcCC
Confidence 444444443
No 10
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.56 E-value=79 Score=19.18 Aligned_cols=17 Identities=29% Similarity=0.600 Sum_probs=0.0
Q ss_pred hHHHHHHhHHhhhhhcC
Q 022735 94 CYNCVSKLPTLSDKQCG 110 (293)
Q Consensus 94 C~~Cv~~a~~~~~~~C~ 110 (293)
|..|+......-...||
T Consensus 31 c~~Ci~~~~~~~~~~CP 47 (65)
T d1g25a_ 31 CESCVDLLFVRGAGNCP 47 (65)
T ss_dssp EHHHHHHHHHTTSSSCT
T ss_pred hHHHHHHHhCcCcCCCC
Done!