Query 022736
Match_columns 293
No_of_seqs 194 out of 2034
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:46:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2743 Cobalamin synthesis pr 100.0 7.9E-49 1.7E-53 334.1 21.2 263 24-292 49-311 (391)
2 COG0523 Putative GTPases (G3E 100.0 1.1E-47 2.5E-52 342.3 22.2 243 32-292 1-246 (323)
3 PRK11537 putative GTP-binding 100.0 3.5E-44 7.6E-49 321.4 21.5 241 29-292 1-245 (318)
4 TIGR02475 CobW cobalamin biosy 100.0 1.2E-42 2.6E-47 314.5 22.6 255 30-293 2-274 (341)
5 PF02492 cobW: CobW/HypB/UreG, 100.0 8.6E-36 1.9E-40 247.3 12.1 175 33-225 1-177 (178)
6 cd03112 CobW_like The function 100.0 3.8E-31 8.2E-36 215.2 15.2 154 33-198 1-158 (158)
7 COG1159 Era GTPase [General fu 99.9 1E-25 2.2E-30 194.5 8.4 185 29-275 3-192 (298)
8 PRK10463 hydrogenase nickel in 99.9 2.9E-25 6.2E-30 194.4 9.7 195 19-258 91-287 (290)
9 TIGR00073 hypB hydrogenase acc 99.9 4.5E-24 9.6E-29 181.3 13.2 192 22-258 12-205 (207)
10 TIGR00101 ureG urease accessor 99.9 9.3E-23 2E-27 171.8 15.5 189 33-259 2-195 (199)
11 PF02421 FeoB_N: Ferrous iron 99.8 1.6E-20 3.4E-25 151.0 7.4 152 35-255 3-156 (156)
12 COG1160 Predicted GTPases [Gen 99.8 1E-19 2.2E-24 165.7 12.0 160 33-259 4-164 (444)
13 PRK00089 era GTPase Era; Revie 99.8 7.8E-19 1.7E-23 156.8 14.3 168 29-258 2-169 (292)
14 TIGR00436 era GTP-binding prot 99.8 8.5E-19 1.8E-23 154.8 12.6 161 34-258 2-162 (270)
15 PRK15494 era GTPase Era; Provi 99.8 4.1E-19 8.8E-24 161.5 9.1 165 30-258 50-214 (339)
16 PRK09435 membrane ATPase/prote 99.8 3.7E-18 8E-23 153.4 14.3 193 30-259 54-259 (332)
17 COG0378 HypB Ni2+-binding GTPa 99.8 1.1E-18 2.4E-23 142.3 9.3 185 32-258 13-199 (202)
18 COG0218 Predicted GTPase [Gene 99.7 1.5E-17 3.2E-22 136.8 10.9 182 17-258 9-195 (200)
19 COG1160 Predicted GTPases [Gen 99.7 9.2E-18 2E-22 152.9 10.6 167 32-256 178-347 (444)
20 cd04163 Era Era subfamily. Er 99.7 4.2E-17 9.1E-22 132.0 11.9 165 31-257 2-166 (168)
21 PF03308 ArgK: ArgK protein; 99.7 4E-18 8.6E-23 145.6 5.7 191 30-259 27-229 (266)
22 COG1703 ArgK Putative periplas 99.7 8.9E-17 1.9E-21 139.0 10.7 193 30-259 49-253 (323)
23 TIGR03598 GTPase_YsxC ribosome 99.7 1.4E-16 3.1E-21 132.0 9.5 169 18-249 4-179 (179)
24 PRK12298 obgE GTPase CgtA; Rev 99.7 9.9E-17 2.1E-21 147.9 9.4 163 34-257 161-330 (390)
25 KOG1423 Ras-like GTPase ERA [C 99.7 3E-16 6.6E-21 135.5 10.6 181 29-257 69-268 (379)
26 COG0486 ThdF Predicted GTPase 99.7 1.4E-16 3.1E-21 145.5 7.3 155 35-258 220-374 (454)
27 PRK13768 GTPase; Provisional 99.6 7.3E-16 1.6E-20 134.7 9.2 218 33-259 3-246 (253)
28 cd01894 EngA1 EngA1 subfamily. 99.6 1.4E-15 3.1E-20 122.3 9.9 155 36-257 1-155 (157)
29 KOG1532 GTPase XAB1, interacts 99.6 2.6E-16 5.7E-21 134.0 5.2 223 29-256 16-260 (366)
30 PRK12299 obgE GTPase CgtA; Rev 99.6 1.5E-15 3.3E-20 137.4 9.8 162 32-258 158-326 (335)
31 PF10662 PduV-EutP: Ethanolami 99.6 1.7E-15 3.6E-20 119.4 8.7 103 125-257 40-143 (143)
32 cd01895 EngA2 EngA2 subfamily. 99.6 3.7E-15 8E-20 121.6 11.0 167 33-257 3-172 (174)
33 PF03029 ATP_bind_1: Conserved 99.6 6.1E-16 1.3E-20 133.7 5.9 209 37-257 1-234 (238)
34 cd00881 GTP_translation_factor 99.6 6.5E-15 1.4E-19 122.2 10.9 184 35-258 2-185 (189)
35 TIGR03156 GTP_HflX GTP-binding 99.6 6.7E-15 1.5E-19 134.2 11.8 158 30-257 187-349 (351)
36 PRK12296 obgE GTPase CgtA; Rev 99.6 2.2E-15 4.9E-20 141.6 8.5 165 32-257 159-337 (500)
37 PRK03003 GTP-binding protein D 99.6 4.7E-15 1E-19 140.8 10.1 160 31-258 37-197 (472)
38 TIGR03594 GTPase_EngA ribosome 99.6 7E-15 1.5E-19 138.2 10.8 157 35-258 2-158 (429)
39 cd01898 Obg Obg subfamily. Th 99.6 1.4E-14 3E-19 118.5 11.0 157 35-257 3-168 (170)
40 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.6E-14 3.5E-19 117.8 11.3 164 33-258 1-164 (168)
41 TIGR03594 GTPase_EngA ribosome 99.6 1.4E-14 3E-19 136.2 12.2 167 31-256 171-340 (429)
42 cd04164 trmE TrmE (MnmE, ThdF, 99.6 8.1E-15 1.8E-19 117.8 9.2 151 34-257 3-154 (157)
43 PRK12297 obgE GTPase CgtA; Rev 99.6 9.8E-15 2.1E-19 135.5 10.9 158 34-257 160-324 (424)
44 PRK00093 GTP-binding protein D 99.6 1E-14 2.2E-19 137.4 11.0 165 31-255 172-339 (435)
45 TIGR00750 lao LAO/AO transport 99.6 2.4E-14 5.2E-19 128.3 12.8 194 30-258 32-236 (300)
46 PRK00093 GTP-binding protein D 99.6 1.2E-14 2.6E-19 136.9 11.0 157 33-257 2-159 (435)
47 PRK11058 GTPase HflX; Provisio 99.6 3E-14 6.5E-19 132.9 13.3 161 30-258 195-360 (426)
48 cd04171 SelB SelB subfamily. 99.6 1.3E-14 2.9E-19 117.6 9.6 111 121-256 51-162 (164)
49 cd04160 Arfrp1 Arfrp1 subfamil 99.6 7.2E-15 1.6E-19 119.9 8.0 115 120-257 49-166 (167)
50 PRK00454 engB GTP-binding prot 99.6 1.5E-14 3.2E-19 121.3 9.7 176 20-258 12-192 (196)
51 TIGR02729 Obg_CgtA Obg family 99.6 1.9E-14 4.2E-19 130.1 10.5 163 32-257 157-326 (329)
52 COG2262 HflX GTPases [General 99.6 1.6E-14 3.4E-19 130.1 9.4 169 20-257 180-353 (411)
53 PRK09866 hypothetical protein; 99.6 6.8E-14 1.5E-18 132.9 14.0 124 120-262 229-355 (741)
54 cd01879 FeoB Ferrous iron tran 99.5 1.7E-14 3.7E-19 116.3 8.4 153 37-257 1-154 (158)
55 PRK09518 bifunctional cytidyla 99.5 2.9E-14 6.4E-19 141.5 10.5 162 30-258 273-434 (712)
56 cd01878 HflX HflX subfamily. 99.5 3.4E-14 7.3E-19 120.2 9.4 159 30-257 39-202 (204)
57 PRK05291 trmE tRNA modificatio 99.5 1.6E-14 3.4E-19 136.1 8.0 153 33-258 216-368 (449)
58 PRK03003 GTP-binding protein D 99.5 3.5E-14 7.6E-19 134.8 10.4 166 31-256 210-378 (472)
59 PRK09554 feoB ferrous iron tra 99.5 2.7E-14 5.9E-19 141.7 9.8 157 33-258 4-166 (772)
60 smart00178 SAR Sar1p-like memb 99.5 3.7E-14 8E-19 118.2 8.4 164 31-257 16-182 (184)
61 PRK09518 bifunctional cytidyla 99.5 5.9E-14 1.3E-18 139.4 11.1 165 31-255 449-616 (712)
62 cd01897 NOG NOG1 is a nucleola 99.5 4.8E-14 1E-18 115.1 8.7 161 33-257 1-165 (168)
63 TIGR02528 EutP ethanolamine ut 99.5 8.8E-14 1.9E-18 110.5 9.0 104 124-256 38-141 (142)
64 cd01876 YihA_EngB The YihA (En 99.5 2.2E-13 4.8E-18 110.3 11.1 161 35-257 2-168 (170)
65 cd04154 Arl2 Arl2 subfamily. 99.5 1.3E-13 2.7E-18 113.5 8.9 112 120-256 57-171 (173)
66 KOG1489 Predicted GTP-binding 99.5 3.3E-14 7.2E-19 123.6 5.5 167 30-257 194-364 (366)
67 cd01881 Obg_like The Obg-like 99.5 5.6E-14 1.2E-18 115.3 6.6 158 37-256 1-173 (176)
68 cd01889 SelB_euk SelB subfamil 99.5 1.1E-13 2.4E-18 116.0 8.1 118 120-258 67-184 (192)
69 COG0370 FeoB Fe2+ transport sy 99.5 1.1E-13 2.3E-18 131.9 8.5 156 33-257 4-161 (653)
70 cd00880 Era_like Era (E. coli 99.5 1.7E-13 3.6E-18 109.5 8.0 115 120-257 44-161 (163)
71 PRK04213 GTP-binding protein; 99.5 2.5E-13 5.5E-18 114.5 9.1 169 31-258 8-190 (201)
72 cd04155 Arl3 Arl3 subfamily. 99.5 2.7E-13 5.9E-18 111.2 8.5 155 32-256 14-171 (173)
73 cd04157 Arl6 Arl6 subfamily. 99.4 3.2E-13 6.8E-18 109.4 8.4 113 120-257 44-161 (162)
74 PF00009 GTP_EFTU: Elongation 99.4 2.7E-13 5.8E-18 113.3 8.1 113 119-258 68-185 (188)
75 cd01890 LepA LepA subfamily. 99.4 2.1E-12 4.5E-17 106.5 13.4 110 120-258 66-175 (179)
76 cd04151 Arl1 Arl1 subfamily. 99.4 4.4E-13 9.6E-18 108.5 8.9 112 120-256 42-156 (158)
77 TIGR00231 small_GTP small GTP- 99.4 5.9E-13 1.3E-17 106.2 9.5 111 121-256 50-160 (161)
78 cd04156 ARLTS1 ARLTS1 subfamil 99.4 6.6E-13 1.4E-17 107.4 9.5 112 121-256 44-158 (160)
79 PRK15467 ethanolamine utilizat 99.4 9.6E-13 2.1E-17 107.0 10.3 104 125-258 41-145 (158)
80 cd01861 Rab6 Rab6 subfamily. 99.4 1.3E-12 2.8E-17 105.8 10.7 108 122-257 50-159 (161)
81 PF01926 MMR_HSR1: 50S ribosom 99.4 4.9E-13 1.1E-17 102.8 7.4 114 35-195 2-116 (116)
82 TIGR00437 feoB ferrous iron tr 99.4 3.1E-13 6.7E-18 131.1 7.4 152 39-258 1-153 (591)
83 cd00879 Sar1 Sar1 subfamily. 99.4 6.3E-13 1.4E-17 111.0 8.3 122 121-257 63-188 (190)
84 cd00878 Arf_Arl Arf (ADP-ribos 99.4 8.3E-13 1.8E-17 106.7 8.8 112 120-256 42-156 (158)
85 cd04149 Arf6 Arf6 subfamily. 99.4 9.3E-13 2E-17 108.1 9.1 111 121-256 53-166 (168)
86 cd04165 GTPBP1_like GTPBP1-lik 99.4 1.9E-12 4.1E-17 111.1 11.2 126 119-257 82-220 (224)
87 cd01864 Rab19 Rab19 subfamily. 99.4 1.4E-12 3.1E-17 106.2 10.0 109 121-257 52-163 (165)
88 cd01863 Rab18 Rab18 subfamily. 99.4 6.7E-13 1.4E-17 107.5 8.0 106 121-256 49-158 (161)
89 cd01865 Rab3 Rab3 subfamily. 99.4 1.6E-12 3.5E-17 106.0 10.1 108 121-257 50-160 (165)
90 cd04158 ARD1 ARD1 subfamily. 99.4 1.1E-12 2.4E-17 107.6 8.9 115 120-258 42-159 (169)
91 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 3E-12 6.5E-17 106.5 11.5 117 120-257 51-167 (183)
92 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 9.8E-13 2.1E-17 108.5 8.3 112 120-256 58-172 (174)
93 cd01884 EF_Tu EF-Tu subfamily. 99.4 1.1E-12 2.4E-17 110.2 8.6 109 119-249 63-172 (195)
94 cd01891 TypA_BipA TypA (tyrosi 99.4 9.1E-13 2E-17 110.6 8.0 114 119-254 63-176 (194)
95 cd04145 M_R_Ras_like M-Ras/R-R 99.4 1.5E-12 3.2E-17 105.7 9.0 108 121-257 50-161 (164)
96 cd04159 Arl10_like Arl10-like 99.4 1.2E-12 2.6E-17 104.9 8.3 112 121-257 44-158 (159)
97 KOG1191 Mitochondrial GTPase [ 99.4 3.7E-13 8E-18 123.3 5.8 170 33-257 269-447 (531)
98 cd04139 RalA_RalB RalA/RalB su 99.4 1.8E-12 3.9E-17 104.9 9.4 109 121-257 48-159 (164)
99 cd00154 Rab Rab family. Rab G 99.4 2E-12 4.3E-17 103.6 9.4 107 121-256 49-158 (159)
100 TIGR00450 mnmE_trmE_thdF tRNA 99.4 9E-13 2E-17 123.7 8.5 122 33-201 204-325 (442)
101 smart00173 RAS Ras subfamily o 99.4 1.3E-12 2.9E-17 106.1 8.4 108 121-257 48-159 (164)
102 cd04138 H_N_K_Ras_like H-Ras/N 99.4 1.5E-12 3.3E-17 105.1 8.7 105 123-257 51-159 (162)
103 cd04119 RJL RJL (RabJ-Like) su 99.4 1.1E-12 2.3E-17 106.7 7.5 108 121-257 49-164 (168)
104 cd01866 Rab2 Rab2 subfamily. 99.4 3.5E-12 7.6E-17 104.4 10.4 106 121-258 53-164 (168)
105 cd01860 Rab5_related Rab5-rela 99.4 3E-12 6.5E-17 103.8 9.8 108 121-257 50-160 (163)
106 cd04112 Rab26 Rab26 subfamily. 99.4 3.8E-12 8.3E-17 106.5 10.6 109 121-258 50-161 (191)
107 cd04143 Rhes_like Rhes_like su 99.4 5.2E-12 1.1E-16 110.0 11.7 136 121-285 48-195 (247)
108 cd01862 Rab7 Rab7 subfamily. 99.4 7.7E-12 1.7E-16 102.2 12.1 109 122-257 50-164 (172)
109 cd01868 Rab11_like Rab11-like. 99.4 3.5E-12 7.7E-17 103.7 9.9 108 121-257 52-162 (165)
110 cd04137 RheB Rheb (Ras Homolog 99.4 1.5E-12 3.3E-17 107.6 7.8 110 121-258 49-161 (180)
111 cd04106 Rab23_lke Rab23-like s 99.4 3.2E-12 7E-17 103.5 9.5 105 121-257 51-160 (162)
112 cd04150 Arf1_5_like Arf1-Arf5- 99.4 2.5E-12 5.5E-17 104.5 8.8 112 120-256 43-157 (159)
113 smart00175 RAB Rab subfamily o 99.4 3.9E-12 8.5E-17 103.1 9.7 107 122-257 50-159 (164)
114 cd01888 eIF2_gamma eIF2-gamma 99.4 4.8E-12 1E-16 107.1 10.5 114 121-260 83-199 (203)
115 TIGR00491 aIF-2 translation in 99.4 3E-12 6.4E-17 123.7 10.3 189 30-256 2-212 (590)
116 cd04136 Rap_like Rap-like subf 99.4 2.2E-12 4.7E-17 104.6 7.9 108 121-257 49-160 (163)
117 cd04101 RabL4 RabL4 (Rab-like4 99.4 1.1E-11 2.4E-16 100.6 12.1 108 121-257 52-161 (164)
118 COG1084 Predicted GTPase [Gene 99.4 5.6E-12 1.2E-16 110.6 10.9 166 29-256 165-332 (346)
119 cd04175 Rap1 Rap1 subgroup. T 99.4 2.4E-12 5.3E-17 104.7 8.2 109 121-257 49-160 (164)
120 cd04113 Rab4 Rab4 subfamily. 99.4 4.1E-12 9E-17 102.9 9.5 107 121-256 49-158 (161)
121 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 6.5E-12 1.4E-16 102.4 10.7 108 121-257 51-161 (166)
122 PLN03118 Rab family protein; P 99.4 6.1E-12 1.3E-16 107.0 10.9 109 121-257 62-174 (211)
123 smart00177 ARF ARF-like small 99.4 3.8E-12 8.2E-17 105.1 9.3 114 120-258 56-172 (175)
124 PF00025 Arf: ADP-ribosylation 99.3 5.9E-12 1.3E-16 104.0 10.2 159 30-257 12-173 (175)
125 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 1.7E-11 3.7E-16 103.5 13.1 109 121-257 50-165 (201)
126 cd04109 Rab28 Rab28 subfamily. 99.3 7.2E-12 1.6E-16 106.9 10.4 109 121-258 50-164 (215)
127 cd04114 Rab30 Rab30 subfamily. 99.3 7.1E-12 1.5E-16 102.3 9.7 158 31-257 6-166 (169)
128 cd04123 Rab21 Rab21 subfamily. 99.3 3.3E-12 7.2E-17 103.1 7.7 107 122-257 50-159 (162)
129 PLN00223 ADP-ribosylation fact 99.3 4.5E-12 9.7E-17 105.3 8.4 113 120-257 60-175 (181)
130 cd04122 Rab14 Rab14 subfamily. 99.3 2E-11 4.4E-16 99.6 12.1 107 121-256 51-160 (166)
131 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 2E-11 4.4E-16 102.7 12.4 165 35-257 3-181 (196)
132 cd04161 Arl2l1_Arl13_like Arl2 99.3 2.9E-12 6.3E-17 105.0 7.1 115 120-256 42-165 (167)
133 cd04166 CysN_ATPS CysN_ATPS su 99.3 1.6E-12 3.5E-17 110.4 5.7 110 119-251 75-185 (208)
134 cd04110 Rab35 Rab35 subfamily. 99.3 2.6E-11 5.7E-16 102.2 12.9 104 122-257 56-164 (199)
135 cd00877 Ran Ran (Ras-related n 99.3 1.4E-11 3.1E-16 100.8 10.9 104 121-258 49-157 (166)
136 cd04142 RRP22 RRP22 subfamily. 99.3 1.3E-11 2.7E-16 104.1 10.7 116 121-256 49-170 (198)
137 cd01867 Rab8_Rab10_Rab13_like 99.3 1.5E-11 3.3E-16 100.4 10.9 108 121-257 52-162 (167)
138 TIGR00487 IF-2 translation ini 99.3 9.1E-12 2E-16 120.5 10.9 162 29-256 84-246 (587)
139 cd04124 RabL2 RabL2 subfamily. 99.3 8.6E-12 1.9E-16 101.4 8.9 104 121-256 49-154 (161)
140 cd04127 Rab27A Rab27a subfamil 99.3 1.3E-11 2.8E-16 101.9 10.1 108 121-257 63-174 (180)
141 PTZ00133 ADP-ribosylation fact 99.3 8.8E-12 1.9E-16 103.6 9.0 112 121-257 61-175 (182)
142 cd04118 Rab24 Rab24 subfamily. 99.3 1.4E-11 3.1E-16 103.1 10.0 109 122-257 51-163 (193)
143 COG0536 Obg Predicted GTPase [ 99.3 4.1E-12 8.8E-17 112.0 6.7 162 35-256 162-329 (369)
144 cd04144 Ras2 Ras2 subfamily. 99.3 1.8E-11 3.8E-16 102.4 10.3 107 122-257 48-160 (190)
145 PRK10512 selenocysteinyl-tRNA- 99.3 7.3E-12 1.6E-16 121.9 8.8 112 122-258 52-164 (614)
146 cd04140 ARHI_like ARHI subfami 99.3 2.9E-11 6.2E-16 98.6 11.1 108 121-257 49-162 (165)
147 cd00876 Ras Ras family. The R 99.3 1E-11 2.2E-16 100.0 8.2 109 121-257 47-158 (160)
148 PRK05306 infB translation init 99.3 1.3E-11 2.9E-16 122.3 10.3 162 29-256 287-448 (787)
149 cd01892 Miro2 Miro2 subfamily. 99.3 2.9E-11 6.2E-16 99.3 10.4 107 122-259 55-165 (169)
150 cd00157 Rho Rho (Ras homology) 99.3 1.1E-11 2.3E-16 101.3 7.8 111 121-256 48-169 (171)
151 PTZ00369 Ras-like protein; Pro 99.3 3.5E-11 7.5E-16 100.6 10.9 107 122-257 54-164 (189)
152 cd01886 EF-G Elongation factor 99.3 2.8E-11 6.1E-16 106.7 10.7 129 35-201 2-131 (270)
153 cd04176 Rap2 Rap2 subgroup. T 99.3 1.2E-11 2.6E-16 100.4 7.7 107 122-257 50-160 (163)
154 cd04104 p47_IIGP_like p47 (47- 99.3 2.4E-11 5.2E-16 102.3 9.7 118 121-256 52-180 (197)
155 cd04116 Rab9 Rab9 subfamily. 99.3 3E-11 6.4E-16 98.8 9.9 107 121-256 54-167 (170)
156 KOG0073 GTP-binding ADP-ribosy 99.3 2.7E-11 6E-16 95.8 8.8 155 35-257 19-175 (185)
157 cd01893 Miro1 Miro1 subfamily. 99.3 3E-11 6.6E-16 98.6 9.6 114 120-257 46-161 (166)
158 PRK04004 translation initiatio 99.3 2E-11 4.2E-16 118.3 9.7 133 29-199 3-136 (586)
159 cd04125 RabA_like RabA-like su 99.3 3.7E-11 8.1E-16 100.2 10.1 108 121-257 49-159 (188)
160 TIGR00475 selB selenocysteine- 99.3 2.2E-11 4.8E-16 118.1 9.9 113 121-257 50-163 (581)
161 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 2.2E-11 4.8E-16 100.2 8.4 108 121-257 50-161 (172)
162 CHL00189 infB translation init 99.3 1.9E-11 4.2E-16 120.1 9.3 166 29-257 241-407 (742)
163 cd04177 RSR1 RSR1 subgroup. R 99.2 2.4E-11 5.2E-16 99.4 8.3 108 122-257 50-161 (168)
164 cd04132 Rho4_like Rho4-like su 99.2 1E-10 2.2E-15 97.3 12.3 109 121-257 49-164 (187)
165 cd04147 Ras_dva Ras-dva subfam 99.2 2.2E-11 4.8E-16 102.6 8.3 110 122-258 48-161 (198)
166 cd04120 Rab12 Rab12 subfamily. 99.2 5.4E-11 1.2E-15 100.5 10.6 109 121-257 49-160 (202)
167 cd03114 ArgK-like The function 99.2 1.2E-10 2.5E-15 93.6 11.9 141 34-197 1-148 (148)
168 KOG1534 Putative transcription 99.2 1.2E-11 2.6E-16 102.0 5.8 161 35-201 6-179 (273)
169 cd04108 Rab36_Rab34 Rab34/Rab3 99.2 1.2E-10 2.5E-15 95.8 11.7 108 121-258 49-163 (170)
170 TIGR01393 lepA GTP-binding pro 99.2 1.1E-10 2.4E-15 113.4 13.3 127 121-277 70-196 (595)
171 smart00174 RHO Rho (Ras homolo 99.2 8.7E-11 1.9E-15 96.4 10.4 112 121-257 46-169 (174)
172 cd04148 RGK RGK subfamily. Th 99.2 4.6E-11 1E-15 102.4 9.1 108 121-258 50-161 (221)
173 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 1.2E-10 2.5E-15 95.1 11.1 72 120-202 43-115 (164)
174 PLN03071 GTP-binding nuclear p 99.2 8.7E-11 1.9E-15 100.6 10.4 103 121-257 62-169 (219)
175 PRK12317 elongation factor 1-a 99.2 2.9E-11 6.3E-16 113.6 8.1 111 119-250 82-195 (425)
176 cd04126 Rab20 Rab20 subfamily. 99.2 1.3E-10 2.9E-15 99.4 11.3 124 121-256 44-186 (220)
177 cd04167 Snu114p Snu114p subfam 99.2 2.2E-11 4.9E-16 103.8 6.5 94 120-226 70-166 (213)
178 cd04130 Wrch_1 Wrch-1 subfamil 99.2 1.1E-10 2.4E-15 96.0 10.3 109 122-255 49-169 (173)
179 cd04121 Rab40 Rab40 subfamily. 99.2 1.2E-10 2.6E-15 97.5 10.5 105 121-257 55-164 (189)
180 cd01871 Rac1_like Rac1-like su 99.2 2E-10 4.4E-15 94.7 11.3 108 121-256 49-171 (174)
181 cd04111 Rab39 Rab39 subfamily. 99.2 5.2E-11 1.1E-15 101.4 7.9 105 121-257 52-163 (211)
182 PRK12736 elongation factor Tu; 99.2 3.1E-10 6.7E-15 105.5 13.1 115 120-257 74-198 (394)
183 PRK05433 GTP-binding protein L 99.2 2.6E-10 5.5E-15 111.0 13.0 127 120-276 73-199 (600)
184 cd04128 Spg1 Spg1p. Spg1p (se 99.2 1.7E-10 3.6E-15 96.0 10.1 113 121-258 49-164 (182)
185 cd04168 TetM_like Tet(M)-like 99.2 5.2E-10 1.1E-14 96.9 13.2 71 119-202 62-132 (237)
186 CHL00071 tufA elongation facto 99.2 3E-10 6.6E-15 106.1 12.5 71 119-202 73-144 (409)
187 cd01870 RhoA_like RhoA-like su 99.2 2.5E-10 5.3E-15 93.7 10.5 118 121-257 49-172 (175)
188 cd04117 Rab15 Rab15 subfamily. 99.2 5.3E-10 1.1E-14 90.9 12.2 107 121-256 49-158 (161)
189 cd04105 SR_beta Signal recogni 99.2 2.8E-10 6.2E-15 96.3 10.8 74 120-203 47-126 (203)
190 cd00882 Ras_like_GTPase Ras-li 99.2 8.8E-11 1.9E-15 92.4 7.0 112 120-256 44-156 (157)
191 cd04115 Rab33B_Rab33A Rab33B/R 99.2 9.9E-11 2.2E-15 95.9 7.5 106 121-255 51-164 (170)
192 cd01874 Cdc42 Cdc42 subfamily. 99.1 3.9E-10 8.4E-15 93.1 11.0 115 121-255 49-170 (175)
193 KOG1533 Predicted GTPase [Gene 99.1 1.1E-11 2.3E-16 103.8 1.3 161 35-203 5-180 (290)
194 cd01883 EF1_alpha Eukaryotic e 99.1 5.4E-11 1.2E-15 101.9 5.6 117 119-249 75-194 (219)
195 PLN03110 Rab GTPase; Provision 99.1 5.9E-10 1.3E-14 95.2 11.9 108 121-257 61-171 (216)
196 cd04146 RERG_RasL11_like RERG/ 99.1 3.6E-10 7.8E-15 92.0 10.0 106 122-256 48-160 (165)
197 cd04134 Rho3 Rho3 subfamily. 99.1 3.1E-10 6.8E-15 94.8 9.7 114 121-259 48-173 (189)
198 PF09439 SRPRB: Signal recogni 99.1 2.4E-10 5.2E-15 94.1 8.6 121 31-202 2-128 (181)
199 cd04135 Tc10 TC10 subfamily. 99.1 2.2E-10 4.7E-15 94.0 8.5 109 122-255 49-169 (174)
200 PLN03108 Rab family protein; P 99.1 4.3E-10 9.2E-15 95.7 10.2 106 122-256 56-164 (210)
201 cd01896 DRG The developmentall 99.1 2.7E-10 5.8E-15 98.5 9.0 90 34-166 2-91 (233)
202 PRK14974 cell division protein 99.1 2.1E-09 4.5E-14 97.2 14.9 149 30-201 138-294 (336)
203 PRK12735 elongation factor Tu; 99.1 1.2E-09 2.5E-14 101.8 13.5 106 119-247 73-180 (396)
204 PRK10218 GTP-binding protein; 99.1 7.7E-10 1.7E-14 107.4 12.7 107 119-247 66-172 (607)
205 TIGR01425 SRP54_euk signal rec 99.1 1.1E-09 2.5E-14 101.5 12.8 149 30-200 98-253 (429)
206 PLN03127 Elongation factor Tu; 99.1 5.8E-10 1.2E-14 105.0 10.1 71 119-202 122-193 (447)
207 COG4917 EutP Ethanolamine util 99.1 3.2E-10 6.9E-15 85.9 6.5 103 124-257 40-143 (148)
208 PRK05506 bifunctional sulfate 99.1 9.2E-11 2E-15 115.3 4.4 109 119-250 102-211 (632)
209 PRK05124 cysN sulfate adenylyl 99.1 2E-10 4.3E-15 109.0 6.5 111 119-251 105-216 (474)
210 TIGR00484 EF-G translation elo 99.1 9.9E-10 2.1E-14 109.1 11.2 136 30-202 8-143 (689)
211 PRK00049 elongation factor Tu; 99.1 3E-09 6.5E-14 99.0 13.8 70 119-201 73-143 (396)
212 cd01875 RhoG RhoG subfamily. 99.1 2.7E-09 5.9E-14 89.3 12.2 120 121-259 51-176 (191)
213 PF00448 SRP54: SRP54-type pro 99.1 8.3E-09 1.8E-13 86.7 15.1 158 33-219 2-167 (196)
214 PRK10416 signal recognition pa 99.1 8.9E-09 1.9E-13 92.8 16.3 152 30-200 112-273 (318)
215 KOG0410 Predicted GTP binding 99.0 3.5E-10 7.7E-15 99.0 6.8 157 25-257 171-338 (410)
216 TIGR01394 TypA_BipA GTP-bindin 99.0 1.5E-09 3.2E-14 105.4 11.9 136 119-277 62-207 (594)
217 PRK12739 elongation factor G; 99.0 7.3E-10 1.6E-14 110.0 9.5 135 30-202 6-141 (691)
218 cd01882 BMS1 Bms1. Bms1 is an 99.0 5.5E-10 1.2E-14 96.0 7.5 143 31-245 38-181 (225)
219 cd04170 EF-G_bact Elongation f 99.0 1E-09 2.2E-14 96.8 9.2 82 119-218 62-143 (268)
220 TIGR03680 eif2g_arch translati 99.0 1.7E-09 3.8E-14 100.9 11.1 113 121-258 80-194 (406)
221 cd01885 EF2 EF2 (for archaea a 99.0 1.3E-09 2.9E-14 93.2 9.4 88 120-220 72-162 (222)
222 TIGR00485 EF-Tu translation el 99.0 3.8E-09 8.2E-14 98.3 13.0 104 120-246 74-179 (394)
223 PRK04000 translation initiatio 99.0 3.3E-09 7.1E-14 99.1 12.5 113 121-258 85-199 (411)
224 PRK00007 elongation factor G; 99.0 1.4E-09 3E-14 108.0 10.4 135 30-202 8-143 (693)
225 PLN03126 Elongation factor Tu; 99.0 6.2E-10 1.3E-14 105.4 7.3 70 120-202 143-213 (478)
226 cd04169 RF3 RF3 subfamily. Pe 99.0 2.8E-09 6E-14 93.9 10.8 71 119-202 69-139 (267)
227 TIGR02034 CysN sulfate adenyly 99.0 6.3E-10 1.4E-14 103.8 6.9 108 120-250 79-187 (406)
228 cd04129 Rho2 Rho2 subfamily. 99.0 2.7E-09 5.8E-14 88.9 9.7 113 121-258 49-171 (187)
229 cd01850 CDC_Septin CDC/Septin. 99.0 9.4E-10 2E-14 97.4 7.2 62 151-218 113-175 (276)
230 cd04133 Rop_like Rop subfamily 99.0 6.3E-09 1.4E-13 86.0 11.3 112 121-257 49-170 (176)
231 PTZ00327 eukaryotic translatio 99.0 3.6E-09 7.7E-14 99.7 10.9 112 122-258 118-231 (460)
232 cd03115 SRP The signal recogni 99.0 1.7E-08 3.7E-13 83.1 13.6 148 34-202 2-155 (173)
233 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 7.4E-09 1.6E-13 86.1 11.4 109 121-254 53-174 (182)
234 KOG1954 Endocytosis/signaling 99.0 1.3E-09 2.8E-14 97.0 6.8 172 31-225 57-250 (532)
235 smart00053 DYNc Dynamin, GTPas 99.0 5.3E-09 1.2E-13 90.3 10.6 77 120-202 124-208 (240)
236 PRK11889 flhF flagellar biosyn 99.0 3.5E-08 7.5E-13 90.1 16.2 160 31-219 240-404 (436)
237 smart00176 RAN Ran (Ras-relate 99.0 5.2E-09 1.1E-13 88.3 10.2 106 121-257 44-151 (200)
238 cd04131 Rnd Rnd subfamily. Th 99.0 6.6E-09 1.4E-13 86.1 10.6 110 121-255 49-171 (178)
239 PF00350 Dynamin_N: Dynamin fa 99.0 8.1E-10 1.8E-14 90.2 5.0 69 120-196 100-168 (168)
240 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 1E-08 2.3E-13 88.3 12.1 110 121-255 61-183 (232)
241 COG0552 FtsY Signal recognitio 98.9 1.1E-08 2.3E-13 90.8 12.0 146 29-198 136-296 (340)
242 COG1163 DRG Predicted GTPase [ 98.9 2.1E-09 4.5E-14 94.4 7.5 95 30-167 61-155 (365)
243 COG2229 Predicted GTPase [Gene 98.9 1.5E-08 3.2E-13 82.2 11.7 108 120-257 67-175 (187)
244 cd04103 Centaurin_gamma Centau 98.9 2.7E-09 5.9E-14 86.6 7.6 104 122-256 48-155 (158)
245 KOG0076 GTP-binding ADP-ribosy 98.9 2.1E-09 4.5E-14 86.1 6.6 163 35-257 20-184 (197)
246 KOG0090 Signal recognition par 98.9 1.9E-09 4.2E-14 89.2 6.6 138 31-220 37-179 (238)
247 TIGR00483 EF-1_alpha translati 98.9 1.5E-09 3.2E-14 102.1 6.5 114 119-250 83-197 (426)
248 TIGR00064 ftsY signal recognit 98.9 3.2E-08 6.9E-13 87.4 14.3 156 30-201 70-232 (272)
249 cd01899 Ygr210 Ygr210 subfamil 98.9 2.6E-09 5.6E-14 96.2 7.3 42 121-163 69-110 (318)
250 PTZ00141 elongation factor 1- 98.9 1E-08 2.3E-13 96.6 11.5 116 119-250 83-203 (446)
251 cd01853 Toc34_like Toc34-like 98.9 3.6E-09 7.8E-14 92.1 7.4 23 32-54 31-53 (249)
252 PRK00771 signal recognition pa 98.9 2.2E-08 4.8E-13 93.6 13.1 150 30-200 93-246 (437)
253 COG0532 InfB Translation initi 98.9 4.7E-09 1E-13 97.9 8.0 165 29-256 2-166 (509)
254 PTZ00132 GTP-binding nuclear p 98.9 4E-08 8.8E-13 83.7 12.9 103 121-257 58-165 (215)
255 PRK14722 flhF flagellar biosyn 98.8 3.6E-08 7.9E-13 90.2 12.3 157 32-218 137-307 (374)
256 PTZ00416 elongation factor 2; 98.8 3.6E-09 7.8E-14 106.9 6.1 141 30-199 17-157 (836)
257 TIGR00991 3a0901s02IAP34 GTP-b 98.8 2.4E-08 5.1E-13 88.7 10.5 129 30-202 36-169 (313)
258 PF00071 Ras: Ras family; Int 98.8 7.1E-08 1.5E-12 77.9 12.5 106 121-255 48-156 (162)
259 PRK12726 flagellar biosynthesi 98.8 7.4E-08 1.6E-12 87.7 13.7 147 30-200 204-356 (407)
260 KOG0075 GTP-binding ADP-ribosy 98.8 2.3E-09 4.9E-14 83.5 3.3 156 35-259 23-181 (186)
261 PRK10867 signal recognition pa 98.8 7.2E-08 1.6E-12 90.0 13.7 152 30-200 98-254 (433)
262 KOG1145 Mitochondrial translat 98.8 9.1E-09 2E-13 95.8 7.6 166 26-256 147-312 (683)
263 PRK13351 elongation factor G; 98.8 4E-08 8.6E-13 97.8 12.7 70 119-201 71-140 (687)
264 cd01900 YchF YchF subfamily. 98.8 5.5E-09 1.2E-13 91.9 5.5 101 35-163 1-103 (274)
265 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.8 5.4E-08 1.2E-12 83.4 11.3 70 121-201 49-120 (222)
266 COG0541 Ffh Signal recognition 98.8 8.1E-08 1.8E-12 87.8 12.6 151 30-200 98-253 (451)
267 KOG0461 Selenocysteine-specifi 98.8 2.6E-08 5.7E-13 88.0 8.9 124 119-262 68-195 (522)
268 PF08477 Miro: Miro-like prote 98.8 1.4E-08 3E-13 77.9 6.5 63 123-197 52-119 (119)
269 TIGR00503 prfC peptide chain r 98.8 5.8E-08 1.3E-12 93.2 11.7 70 119-201 78-147 (527)
270 TIGR00959 ffh signal recogniti 98.8 1.8E-07 4E-12 87.3 14.6 150 31-200 98-253 (428)
271 KOG0462 Elongation factor-type 98.8 1.6E-08 3.4E-13 94.2 7.3 126 121-276 125-250 (650)
272 PRK06731 flhF flagellar biosyn 98.8 4.6E-07 1E-11 79.7 16.2 150 31-201 74-226 (270)
273 PRK09601 GTP-binding protein Y 98.7 1.6E-08 3.4E-13 92.1 6.5 103 33-163 3-107 (364)
274 COG3596 Predicted GTPase [Gene 98.7 8.5E-08 1.8E-12 82.8 10.3 125 31-201 37-163 (296)
275 PRK12723 flagellar biosynthesi 98.7 8.2E-07 1.8E-11 81.9 16.9 158 30-219 172-339 (388)
276 PRK12740 elongation factor G; 98.7 9.9E-08 2.1E-12 94.7 11.8 70 119-201 58-127 (668)
277 PTZ00258 GTP-binding protein; 98.7 2.4E-08 5.3E-13 91.8 6.6 103 33-163 22-126 (390)
278 PRK14723 flhF flagellar biosyn 98.7 4.3E-07 9.3E-12 89.6 15.4 159 32-219 185-350 (767)
279 PRK00741 prfC peptide chain re 98.7 1.1E-07 2.3E-12 91.4 10.9 71 119-202 77-147 (526)
280 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.7 1.2E-07 2.7E-12 77.5 9.3 157 33-258 23-183 (221)
281 PRK12724 flagellar biosynthesi 98.7 6.4E-07 1.4E-11 82.8 15.1 157 32-219 223-386 (432)
282 cd01873 RhoBTB RhoBTB subfamil 98.7 3.2E-07 7E-12 77.1 11.5 107 121-255 66-191 (195)
283 PRK05703 flhF flagellar biosyn 98.7 4.8E-07 1E-11 84.7 13.5 158 33-219 222-384 (424)
284 PLN00043 elongation factor 1-a 98.7 9E-08 1.9E-12 90.3 8.7 117 119-249 83-202 (447)
285 TIGR00176 mobB molybdopterin-g 98.6 2.5E-08 5.5E-13 80.6 4.1 91 34-130 1-99 (155)
286 KOG0780 Signal recognition par 98.6 2.8E-07 6E-12 82.9 10.9 148 29-199 98-253 (483)
287 PRK12727 flagellar biosynthesi 98.6 9.8E-07 2.1E-11 83.6 15.2 156 31-219 349-511 (559)
288 PLN00116 translation elongatio 98.6 4E-08 8.7E-13 99.5 6.4 166 29-219 16-186 (843)
289 KOG0070 GTP-binding ADP-ribosy 98.6 2.2E-08 4.8E-13 81.2 3.6 112 119-258 59-176 (181)
290 KOG0078 GTP-binding protein SE 98.6 4.5E-07 9.8E-12 75.2 11.3 153 31-252 11-166 (207)
291 KOG0092 GTPase Rab5/YPT51 and 98.6 1.5E-07 3.2E-12 76.9 8.1 108 121-257 54-164 (200)
292 COG1100 GTPase SAR1 and relate 98.6 4.6E-08 1E-12 83.3 5.1 116 34-202 7-127 (219)
293 TIGR02836 spore_IV_A stage IV 98.6 1.6E-07 3.5E-12 85.8 8.7 131 34-199 19-193 (492)
294 cd01858 NGP_1 NGP-1. Autoanti 98.6 5.5E-08 1.2E-12 78.8 5.1 33 34-70 104-136 (157)
295 COG0481 LepA Membrane GTPase L 98.6 1.5E-07 3.2E-12 86.6 8.3 127 120-278 75-203 (603)
296 KOG0072 GTP-binding ADP-ribosy 98.6 2.8E-08 6E-13 77.2 2.6 115 119-258 60-177 (182)
297 PF04548 AIG1: AIG1 family; I 98.6 3.3E-07 7.2E-12 78.0 8.9 82 119-203 47-133 (212)
298 KOG0394 Ras-related GTPase [Ge 98.6 1.5E-07 3.3E-12 76.2 6.3 150 34-252 11-170 (210)
299 PRK06995 flhF flagellar biosyn 98.6 2E-06 4.4E-11 81.2 14.8 159 32-219 256-418 (484)
300 PRK07560 elongation factor EF- 98.5 2.9E-07 6.2E-12 92.2 9.4 135 30-200 18-153 (731)
301 KOG0077 Vesicle coat complex C 98.5 2.9E-07 6.3E-12 73.4 7.2 167 31-255 19-188 (193)
302 TIGR00993 3a0901s04IAP86 chlor 98.5 2.7E-07 5.8E-12 88.8 8.3 125 34-201 120-251 (763)
303 KOG0448 Mitofusin 1 GTPase, in 98.5 1.2E-06 2.7E-11 83.7 12.6 102 122-243 207-309 (749)
304 PF00735 Septin: Septin; Inte 98.5 2.5E-07 5.4E-12 82.0 7.2 58 151-216 112-172 (281)
305 cd04102 RabL3 RabL3 (Rab-like3 98.5 4E-07 8.7E-12 76.9 8.1 69 121-201 54-144 (202)
306 cd03110 Fer4_NifH_child This p 98.5 2.9E-06 6.3E-11 70.1 13.0 162 34-218 2-170 (179)
307 cd04178 Nucleostemin_like Nucl 98.5 1.3E-07 2.9E-12 77.8 4.8 35 33-71 118-152 (172)
308 TIGR00490 aEF-2 translation el 98.5 5.2E-07 1.1E-11 90.1 9.7 70 119-201 84-153 (720)
309 PRK14721 flhF flagellar biosyn 98.5 4.4E-06 9.5E-11 77.8 15.0 156 32-219 191-353 (420)
310 COG1419 FlhF Flagellar GTP-bin 98.5 4.9E-06 1.1E-10 76.1 14.8 161 32-226 203-372 (407)
311 PLN00023 GTP-binding protein; 98.5 7.2E-07 1.6E-11 79.9 8.8 69 121-201 83-166 (334)
312 COG1217 TypA Predicted membran 98.5 1.2E-06 2.7E-11 80.5 10.3 136 118-276 65-210 (603)
313 KOG0074 GTP-binding ADP-ribosy 98.5 3.6E-07 7.9E-12 70.9 5.8 118 119-258 60-177 (185)
314 KOG1144 Translation initiation 98.4 1.6E-06 3.6E-11 83.4 11.2 190 29-257 472-684 (1064)
315 COG5256 TEF1 Translation elong 98.4 4.9E-07 1.1E-11 82.1 7.2 121 119-255 83-209 (428)
316 KOG0098 GTPase Rab2, small G p 98.4 2.1E-06 4.6E-11 69.8 9.9 146 35-251 9-159 (216)
317 KOG1490 GTP-binding protein CR 98.4 2.9E-07 6.3E-12 85.2 5.0 139 30-215 166-310 (620)
318 COG3640 CooC CO dehydrogenase 98.4 5.4E-06 1.2E-10 70.2 11.8 147 34-199 2-198 (255)
319 COG2895 CysN GTPases - Sulfate 98.4 1.4E-06 3.1E-11 77.6 8.7 115 119-256 84-202 (431)
320 KOG0084 GTPase Rab1/YPT1, smal 98.4 1.9E-06 4.2E-11 70.7 8.8 150 32-252 9-164 (205)
321 COG1161 Predicted GTPases [Gen 98.4 3.9E-07 8.4E-12 82.4 5.2 35 34-72 134-168 (322)
322 KOG2486 Predicted GTPase [Gene 98.4 2.4E-07 5.1E-12 80.0 3.5 124 30-201 134-263 (320)
323 KOG0093 GTPase Rab3, small G p 98.4 6.9E-06 1.5E-10 64.3 11.1 158 22-254 12-177 (193)
324 COG5257 GCD11 Translation init 98.4 3.2E-07 7E-12 80.6 4.1 116 123-262 88-204 (415)
325 PF05049 IIGP: Interferon-indu 98.4 6.5E-07 1.4E-11 81.7 6.2 70 119-198 84-153 (376)
326 KOG0081 GTPase Rab27, small G 98.4 7.1E-07 1.5E-11 70.6 5.3 100 122-253 68-174 (219)
327 PF04670 Gtr1_RagA: Gtr1/RagA 98.4 7.2E-07 1.6E-11 76.7 5.9 91 120-216 47-141 (232)
328 KOG0086 GTPase Rab4, small G p 98.3 4.8E-06 1E-10 65.5 9.7 147 35-251 12-162 (214)
329 PRK14845 translation initiatio 98.3 7.1E-07 1.5E-11 91.1 6.5 124 120-256 525-669 (1049)
330 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 8.5E-07 1.8E-11 70.5 5.5 33 34-70 85-117 (141)
331 COG0480 FusA Translation elong 98.3 1.5E-06 3.3E-11 85.5 8.3 144 29-216 7-157 (697)
332 KOG0071 GTP-binding ADP-ribosy 98.3 2.3E-06 5E-11 66.4 7.0 114 120-258 60-176 (180)
333 KOG0080 GTPase Rab18, small G 98.3 1.2E-06 2.5E-11 69.6 5.1 143 35-249 14-163 (209)
334 cd01851 GBP Guanylate-binding 98.3 2.4E-06 5.3E-11 73.3 7.5 26 29-54 4-29 (224)
335 PRK09563 rbgA GTPase YlqF; Rev 98.3 1E-06 2.2E-11 78.5 5.2 36 32-71 121-156 (287)
336 COG2403 Predicted GTPase [Gene 98.3 7E-05 1.5E-09 67.3 16.4 167 30-227 124-305 (449)
337 PRK09602 translation-associate 98.2 1.6E-06 3.4E-11 80.6 5.7 41 122-163 73-113 (396)
338 KOG0079 GTP-binding protein H- 98.2 8.5E-06 1.8E-10 63.8 8.7 100 121-252 57-161 (198)
339 TIGR03597 GTPase_YqeH ribosome 98.2 3.1E-06 6.7E-11 77.9 7.5 91 34-164 156-249 (360)
340 cd01855 YqeH YqeH. YqeH is an 98.2 1.2E-06 2.6E-11 73.1 4.1 38 33-70 128-169 (190)
341 COG3276 SelB Selenocysteine-sp 98.2 3.1E-06 6.7E-11 77.6 6.7 110 121-258 50-160 (447)
342 cd01849 YlqF_related_GTPase Yl 98.2 1.9E-06 4.2E-11 69.5 4.8 36 31-70 99-134 (155)
343 PTZ00099 rab6; Provisional 98.2 8.5E-06 1.8E-10 67.3 8.6 111 120-258 28-140 (176)
344 PRK13796 GTPase YqeH; Provisio 98.2 2.4E-06 5.2E-11 78.7 5.8 39 34-72 162-201 (365)
345 PF03193 DUF258: Protein of un 98.2 5.2E-07 1.1E-11 72.9 1.2 23 33-55 36-58 (161)
346 TIGR03499 FlhF flagellar biosy 98.2 3.8E-06 8.2E-11 74.7 6.7 39 31-69 193-235 (282)
347 TIGR03596 GTPase_YlqF ribosome 98.2 1.9E-06 4E-11 76.5 4.5 35 32-70 118-152 (276)
348 KOG0095 GTPase Rab30, small G 98.1 9.3E-06 2E-10 63.7 7.3 147 33-253 8-162 (213)
349 KOG0458 Elongation factor 1 al 98.1 7E-06 1.5E-10 77.4 7.8 122 120-257 254-385 (603)
350 COG1763 MobB Molybdopterin-gua 98.1 5.1E-06 1.1E-10 67.2 5.9 39 31-69 1-41 (161)
351 KOG1424 Predicted GTP-binding 98.1 3.1E-06 6.8E-11 78.7 4.7 37 32-72 314-350 (562)
352 cd02037 MRP-like MRP (Multiple 98.1 9.5E-05 2.1E-09 60.5 12.6 130 34-199 2-134 (169)
353 PRK12289 GTPase RsgA; Reviewed 98.1 3.6E-06 7.8E-11 76.9 4.5 21 34-54 174-194 (352)
354 PRK12288 GTPase RsgA; Reviewed 98.1 3.7E-06 8.1E-11 76.7 4.3 21 34-54 207-227 (347)
355 PRK14493 putative bifunctional 98.1 1.5E-05 3.3E-10 70.3 7.9 93 32-132 1-99 (274)
356 COG1162 Predicted GTPases [Gen 98.1 3.3E-06 7.1E-11 74.5 3.6 36 33-69 165-200 (301)
357 COG5019 CDC3 Septin family pro 98.0 1.7E-05 3.6E-10 71.4 8.0 91 120-218 81-194 (373)
358 TIGR00092 GTP-binding protein 98.0 8.8E-06 1.9E-10 74.3 6.3 102 35-163 5-108 (368)
359 KOG0781 Signal recognition par 98.0 7.6E-06 1.6E-10 75.6 5.3 158 30-201 376-545 (587)
360 cd02034 CooC The accessory pro 98.0 4E-05 8.6E-10 58.8 7.8 92 35-132 2-98 (116)
361 COG0012 Predicted GTPase, prob 98.0 1.2E-05 2.7E-10 72.5 5.7 103 33-163 3-108 (372)
362 COG5258 GTPBP1 GTPase [General 98.0 1.3E-05 2.9E-10 72.2 5.7 121 123-256 203-335 (527)
363 cd02036 MinD Bacterial cell di 97.9 0.00027 5.8E-09 57.9 13.0 124 34-200 2-128 (179)
364 KOG2655 Septin family protein 97.9 3.5E-05 7.5E-10 69.7 8.1 54 151-216 128-184 (366)
365 KOG0087 GTPase Rab11/YPT3, sma 97.9 4.1E-05 8.8E-10 63.7 7.9 108 35-200 17-133 (222)
366 PRK10751 molybdopterin-guanine 97.9 1.5E-05 3.3E-10 65.4 5.2 40 30-69 4-45 (173)
367 TIGR00157 ribosome small subun 97.9 1.1E-05 2.5E-10 70.2 4.8 23 33-55 121-143 (245)
368 cd01856 YlqF YlqF. Proteins o 97.9 2.1E-05 4.5E-10 64.6 5.9 35 32-70 115-149 (171)
369 KOG0091 GTPase Rab39, small G 97.9 0.00014 3E-09 58.1 10.1 154 35-255 11-168 (213)
370 PRK00652 lpxK tetraacyldisacch 97.9 9.8E-05 2.1E-09 66.7 10.3 148 30-196 47-201 (325)
371 KOG4252 GTP-binding protein [S 97.9 5.1E-05 1.1E-09 61.5 7.0 128 35-219 23-155 (246)
372 COG5192 BMS1 GTP-binding prote 97.9 0.00013 2.8E-09 68.9 10.5 83 152-242 133-224 (1077)
373 COG1120 FepC ABC-type cobalami 97.8 1.6E-05 3.4E-10 69.1 4.1 45 10-54 1-50 (258)
374 COG1341 Predicted GTPase or GT 97.8 0.00018 3.9E-09 65.7 11.0 43 28-70 69-113 (398)
375 KOG0468 U5 snRNP-specific prot 97.8 5E-05 1.1E-09 72.8 7.6 158 30-220 126-286 (971)
376 COG1126 GlnQ ABC-type polar am 97.8 1.9E-05 4.2E-10 66.2 4.3 44 11-54 2-50 (240)
377 PF01656 CbiA: CobQ/CobB/MinD/ 97.8 0.00023 5E-09 59.1 10.8 148 34-200 1-162 (195)
378 PF03205 MobB: Molybdopterin g 97.8 2.5E-05 5.5E-10 62.0 4.5 37 33-69 1-40 (140)
379 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 2.6E-05 5.7E-10 67.5 4.8 46 9-54 2-52 (254)
380 KOG2485 Conserved ATP/GTP bind 97.8 3.3E-05 7.1E-10 68.0 5.1 40 31-70 142-182 (335)
381 PRK14489 putative bifunctional 97.8 6.8E-05 1.5E-09 69.2 7.2 40 30-69 203-244 (366)
382 cd01858 NGP_1 NGP-1. Autoanti 97.8 3E-05 6.5E-10 62.7 4.1 88 148-258 4-93 (157)
383 PRK04296 thymidine kinase; Pro 97.7 0.00051 1.1E-08 57.4 11.0 91 34-138 4-96 (190)
384 PRK13543 cytochrome c biogenes 97.7 6.1E-05 1.3E-09 64.1 5.4 49 6-54 6-59 (214)
385 cd02032 Bchl_like This family 97.7 0.0006 1.3E-08 60.0 11.7 37 34-70 2-40 (267)
386 cd02038 FleN-like FleN is a me 97.7 0.00074 1.6E-08 53.4 11.1 105 34-199 2-110 (139)
387 CHL00175 minD septum-site dete 97.7 0.0013 2.8E-08 58.4 13.7 37 33-69 17-55 (281)
388 PRK00098 GTPase RsgA; Reviewed 97.7 6.3E-05 1.4E-09 67.4 5.3 23 33-55 165-187 (298)
389 KOG0097 GTPase Rab14, small G 97.7 0.0002 4.4E-09 55.7 7.1 149 32-250 11-163 (215)
390 PRK13539 cytochrome c biogenes 97.7 5.2E-05 1.1E-09 64.2 4.2 46 10-55 1-51 (207)
391 COG2884 FtsE Predicted ATPase 97.6 8E-05 1.7E-09 61.3 5.0 45 11-55 1-51 (223)
392 cd01859 MJ1464 MJ1464. This f 97.6 6.6E-05 1.4E-09 60.5 4.6 22 33-54 102-123 (156)
393 KOG1486 GTP-binding protein DR 97.6 0.00016 3.4E-09 62.0 6.8 93 33-168 63-155 (364)
394 KOG1491 Predicted GTP-binding 97.6 4.5E-05 9.7E-10 67.8 3.7 103 33-163 21-125 (391)
395 KOG0395 Ras-related GTPase [Ge 97.6 0.00023 4.9E-09 59.8 7.7 22 34-55 5-26 (196)
396 cd03296 ABC_CysA_sulfate_impor 97.6 5.6E-05 1.2E-09 65.4 4.1 46 10-55 1-51 (239)
397 PRK14491 putative bifunctional 97.6 0.00017 3.6E-09 70.6 7.8 40 29-68 7-48 (597)
398 COG1119 ModF ABC-type molybden 97.6 0.00018 3.8E-09 61.6 6.9 64 7-70 27-97 (257)
399 PRK14494 putative molybdopteri 97.6 0.0002 4.3E-09 61.5 7.3 36 32-67 1-38 (229)
400 TIGR01007 eps_fam capsular exo 97.6 0.0012 2.7E-08 55.5 12.2 39 32-70 17-58 (204)
401 TIGR01969 minD_arch cell divis 97.6 0.0013 2.9E-08 56.9 12.7 36 34-69 3-40 (251)
402 cd01854 YjeQ_engC YjeQ/EngC. 97.6 8.5E-05 1.8E-09 66.2 5.1 23 33-55 162-184 (287)
403 cd02035 ArsA ArsA ATPase funct 97.6 0.00086 1.9E-08 57.2 11.1 37 34-70 1-39 (217)
404 COG3638 ABC-type phosphate/pho 97.6 6.7E-05 1.5E-09 63.8 4.0 45 10-54 2-52 (258)
405 PRK14255 phosphate ABC transpo 97.6 7.4E-05 1.6E-09 65.2 4.5 47 7-54 2-53 (252)
406 PRK11124 artP arginine transpo 97.6 7E-05 1.5E-09 64.9 4.2 46 10-55 1-51 (242)
407 PRK14248 phosphate ABC transpo 97.6 9.9E-05 2.1E-09 65.1 5.2 50 5-54 15-69 (268)
408 cd03111 CpaE_like This protein 97.6 0.0011 2.3E-08 49.9 10.1 73 35-166 3-78 (106)
409 cd02117 NifH_like This family 97.6 0.0012 2.5E-08 56.1 11.6 37 34-70 2-40 (212)
410 cd03116 MobB Molybdenum is an 97.6 9.3E-05 2E-09 60.0 4.4 38 32-69 1-40 (159)
411 TIGR03348 VI_IcmF type VI secr 97.6 0.00012 2.6E-09 77.0 6.3 24 29-52 108-131 (1169)
412 PRK14246 phosphate ABC transpo 97.5 8.4E-05 1.8E-09 65.2 4.0 54 1-55 1-59 (257)
413 TIGR01288 nodI ATP-binding ABC 97.5 9.7E-05 2.1E-09 66.4 4.5 47 9-55 2-53 (303)
414 PRK11831 putative ABC transpor 97.5 9.3E-05 2E-09 65.3 4.2 49 7-55 3-56 (269)
415 TIGR01281 DPOR_bchL light-inde 97.5 0.0019 4E-08 56.9 12.5 36 35-70 3-40 (268)
416 CHL00072 chlL photochlorophyll 97.5 0.0019 4.1E-08 57.7 12.6 36 35-70 3-40 (290)
417 PRK14242 phosphate transporter 97.5 0.00012 2.7E-09 63.8 4.9 46 9-54 4-54 (253)
418 PRK05480 uridine/cytidine kina 97.5 0.00015 3.2E-09 61.5 5.0 39 29-67 3-41 (209)
419 PRK11247 ssuB aliphatic sulfon 97.5 0.00012 2.7E-09 64.1 4.6 46 10-55 11-61 (257)
420 COG4108 PrfC Peptide chain rel 97.5 0.00032 7E-09 64.5 7.3 83 120-216 80-162 (528)
421 cd03274 ABC_SMC4_euk Eukaryoti 97.5 0.00012 2.6E-09 62.3 4.3 41 12-53 6-46 (212)
422 PRK10247 putative ABC transpor 97.5 0.00015 3.2E-09 62.3 4.8 45 10-54 6-55 (225)
423 PRK14269 phosphate ABC transpo 97.5 0.00011 2.3E-09 64.0 4.0 45 10-54 1-50 (246)
424 PRK11231 fecE iron-dicitrate t 97.5 0.00011 2.4E-09 64.2 4.0 45 10-54 1-50 (255)
425 PF13207 AAA_17: AAA domain; P 97.5 0.0001 2.2E-09 56.5 3.2 22 34-55 1-22 (121)
426 PRK14259 phosphate ABC transpo 97.5 0.00015 3.2E-09 64.1 4.6 48 7-54 9-61 (269)
427 PRK14268 phosphate ABC transpo 97.5 0.00016 3.5E-09 63.3 4.8 44 11-54 12-60 (258)
428 TIGR00682 lpxK tetraacyldisacc 97.4 0.00073 1.6E-08 60.8 9.0 149 30-197 26-181 (311)
429 cd01849 YlqF_related_GTPase Yl 97.4 0.00015 3.2E-09 58.5 4.1 80 154-256 1-81 (155)
430 KOG3883 Ras family small GTPas 97.4 0.00042 9.2E-09 54.8 6.3 74 121-203 60-135 (198)
431 PRK14267 phosphate ABC transpo 97.4 0.00016 3.5E-09 63.1 4.5 44 11-54 4-52 (253)
432 PRK14274 phosphate ABC transpo 97.4 0.00014 3E-09 63.8 4.0 44 11-54 12-60 (259)
433 COG1117 PstB ABC-type phosphat 97.4 0.00019 4.2E-09 60.2 4.5 47 8-54 4-55 (253)
434 PRK14271 phosphate ABC transpo 97.4 0.0002 4.2E-09 63.5 4.9 49 6-54 16-69 (276)
435 PRK14250 phosphate ABC transpo 97.4 0.00016 3.5E-09 62.7 4.2 45 10-54 2-51 (241)
436 COG1124 DppF ABC-type dipeptid 97.4 0.00049 1.1E-08 58.8 6.9 45 10-54 2-55 (252)
437 PRK14270 phosphate ABC transpo 97.4 0.00019 4.2E-09 62.6 4.6 46 9-54 2-52 (251)
438 COG3839 MalK ABC-type sugar tr 97.4 0.00015 3.3E-09 65.5 4.0 44 11-54 3-51 (338)
439 cd03259 ABC_Carb_Solutes_like 97.4 0.00015 3.3E-09 61.5 3.8 43 12-54 1-48 (213)
440 PRK13185 chlL protochlorophyll 97.4 0.0043 9.2E-08 54.6 13.1 38 33-70 3-42 (270)
441 cd01859 MJ1464 MJ1464. This f 97.4 0.00014 3.1E-09 58.5 3.3 83 152-258 12-94 (156)
442 PRK10744 pstB phosphate transp 97.4 0.00021 4.4E-09 62.8 4.6 45 10-54 12-61 (260)
443 KOG0088 GTPase Rab21, small G 97.4 0.00027 5.9E-09 56.1 4.8 108 120-255 61-170 (218)
444 cd03265 ABC_DrrA DrrA is the A 97.4 0.00015 3.2E-09 61.9 3.6 43 12-54 1-48 (220)
445 COG1131 CcmA ABC-type multidru 97.4 0.00016 3.5E-09 64.6 4.0 46 10-55 3-54 (293)
446 PRK10575 iron-hydroxamate tran 97.4 0.00022 4.7E-09 62.8 4.7 46 9-54 9-59 (265)
447 cd03258 ABC_MetN_methionine_tr 97.4 0.0002 4.2E-09 61.7 4.3 43 12-54 2-53 (233)
448 COG1127 Ttg2A ABC-type transpo 97.4 0.00026 5.7E-09 60.4 4.7 46 9-54 6-56 (263)
449 PRK14241 phosphate transporter 97.4 0.00021 4.5E-09 62.6 4.3 44 11-54 4-52 (258)
450 TIGR01968 minD_bact septum sit 97.4 0.006 1.3E-07 53.1 13.6 36 34-69 4-41 (261)
451 PRK14261 phosphate ABC transpo 97.4 0.00022 4.7E-09 62.3 4.4 44 11-54 6-54 (253)
452 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.00069 1.5E-08 49.1 6.5 30 34-63 1-32 (99)
453 PRK14265 phosphate ABC transpo 97.3 0.00022 4.7E-09 63.2 4.4 48 7-54 16-68 (274)
454 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00017 3.6E-09 61.5 3.5 43 12-54 1-52 (218)
455 PRK13537 nodulation ABC transp 97.3 0.00022 4.8E-09 64.1 4.5 45 11-55 7-56 (306)
456 COG1116 TauB ABC-type nitrate/ 97.3 0.00022 4.7E-09 61.3 4.1 44 11-54 3-51 (248)
457 cd03261 ABC_Org_Solvent_Resist 97.3 0.00016 3.4E-09 62.5 3.3 44 12-55 1-49 (235)
458 cd03301 ABC_MalK_N The N-termi 97.3 0.00019 4.2E-09 60.9 3.8 44 12-55 1-49 (213)
459 KOG2749 mRNA cleavage and poly 97.3 0.0016 3.5E-08 58.4 9.6 159 29-201 100-278 (415)
460 cd03257 ABC_NikE_OppD_transpor 97.3 0.00023 5E-09 60.9 4.3 44 12-55 2-54 (228)
461 TIGR02673 FtsE cell division A 97.3 0.00024 5.1E-09 60.4 4.3 43 12-54 2-50 (214)
462 PF13671 AAA_33: AAA domain; P 97.3 0.00021 4.5E-09 56.4 3.7 22 34-55 1-22 (143)
463 PRK14237 phosphate transporter 97.3 0.00026 5.6E-09 62.4 4.6 45 10-54 19-68 (267)
464 PRK14273 phosphate ABC transpo 97.3 0.00032 6.9E-09 61.3 5.1 44 11-54 7-55 (254)
465 TIGR02315 ABC_phnC phosphonate 97.3 0.00024 5.3E-09 61.5 4.4 43 12-54 2-50 (243)
466 COG1125 OpuBA ABC-type proline 97.3 0.00021 4.5E-09 61.5 3.8 44 11-54 1-49 (309)
467 COG3842 PotA ABC-type spermidi 97.3 0.00021 4.5E-09 65.0 4.0 46 9-54 3-53 (352)
468 PRK13536 nodulation factor exp 97.3 0.00018 3.8E-09 65.7 3.6 45 11-55 41-90 (340)
469 cd03262 ABC_HisP_GlnQ_permease 97.3 0.0002 4.4E-09 60.7 3.8 43 12-54 1-48 (213)
470 TIGR03864 PQQ_ABC_ATP ABC tran 97.3 0.00021 4.5E-09 61.8 3.8 44 12-55 2-50 (236)
471 cd01131 PilT Pilus retraction 97.3 0.00086 1.9E-08 56.4 7.5 23 33-55 2-24 (198)
472 cd03260 ABC_PstB_phosphate_tra 97.3 0.00019 4.1E-09 61.6 3.6 43 12-54 1-48 (227)
473 cd02019 NK Nucleoside/nucleoti 97.3 0.00025 5.5E-09 49.0 3.5 31 34-64 1-31 (69)
474 PRK01889 GTPase RsgA; Reviewed 97.3 0.00024 5.3E-09 65.2 4.5 83 151-256 111-193 (356)
475 PRK13638 cbiO cobalt transport 97.3 0.00024 5.2E-09 62.8 4.3 43 12-54 2-49 (271)
476 TIGR03522 GldA_ABC_ATP gliding 97.3 0.00019 4.2E-09 64.4 3.7 46 10-55 1-51 (301)
477 PRK11248 tauB taurine transpor 97.3 0.0002 4.4E-09 62.7 3.7 44 12-55 2-50 (255)
478 cd03218 ABC_YhbG The ABC trans 97.3 0.00021 4.5E-09 61.5 3.7 43 12-54 1-48 (232)
479 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.00019 4E-09 61.3 3.4 44 12-55 1-53 (220)
480 PRK14247 phosphate ABC transpo 97.3 0.00025 5.5E-09 61.8 4.3 45 11-55 3-52 (250)
481 cd02023 UMPK Uridine monophosp 97.3 0.00022 4.7E-09 59.9 3.7 34 34-67 1-34 (198)
482 PF13479 AAA_24: AAA domain 97.3 0.00082 1.8E-08 57.2 7.3 76 34-132 5-80 (213)
483 PRK13540 cytochrome c biogenes 97.3 0.00022 4.7E-09 60.0 3.7 43 12-54 2-49 (200)
484 PRK13849 putative crown gall t 97.3 0.0056 1.2E-07 52.8 12.5 110 35-165 5-118 (231)
485 PRK13538 cytochrome c biogenes 97.3 0.00023 5E-09 60.1 3.9 44 12-55 2-50 (204)
486 PRK11264 putative amino-acid A 97.3 0.00028 6.1E-09 61.4 4.5 44 11-54 3-51 (250)
487 PRK10584 putative ABC transpor 97.3 0.00029 6.2E-09 60.5 4.5 44 11-54 6-58 (228)
488 PRK14253 phosphate ABC transpo 97.3 0.0003 6.5E-09 61.2 4.6 44 11-54 3-51 (249)
489 PRK15439 autoinducer 2 ABC tra 97.3 0.00031 6.7E-09 67.8 5.1 54 2-55 2-60 (510)
490 cd03266 ABC_NatA_sodium_export 97.3 0.00026 5.7E-09 60.3 4.1 43 12-54 2-53 (218)
491 PRK14256 phosphate ABC transpo 97.3 0.00027 5.8E-09 61.7 4.2 44 11-54 4-52 (252)
492 cd03269 ABC_putative_ATPase Th 97.3 0.00019 4.1E-09 60.8 3.2 43 12-54 1-48 (210)
493 COG1136 SalX ABC-type antimicr 97.3 0.00027 5.8E-09 60.3 4.1 43 12-54 2-53 (226)
494 PRK14239 phosphate transporter 97.3 0.00027 5.9E-09 61.6 4.2 44 11-54 5-53 (252)
495 PRK13649 cbiO cobalt transport 97.3 0.00027 5.9E-09 62.7 4.3 46 10-55 1-56 (280)
496 PRK10418 nikD nickel transport 97.3 0.00033 7.2E-09 61.2 4.8 45 9-54 2-51 (254)
497 TIGR00972 3a0107s01c2 phosphat 97.3 0.00025 5.4E-09 61.7 4.0 44 12-55 2-50 (247)
498 PF13555 AAA_29: P-loop contai 97.3 0.00025 5.5E-09 47.7 3.1 21 33-53 24-44 (62)
499 PRK11629 lolD lipoprotein tran 97.3 0.00027 5.8E-09 60.9 4.1 44 11-54 5-57 (233)
500 TIGR01978 sufC FeS assembly AT 97.3 0.00021 4.5E-09 61.9 3.4 43 12-54 1-48 (243)
No 1
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.9e-49 Score=334.12 Aligned_cols=263 Identities=49% Similarity=0.775 Sum_probs=236.4
Q ss_pred cccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeecc
Q 022736 24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV 103 (293)
Q Consensus 24 ~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~ 103 (293)
.+.....|+|+.+|+||+|||||||+|+++...+|+++||+.|+||....+++.++.+...+-.+++.++|+|||+||++
T Consensus 49 ~~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtV 128 (391)
T KOG2743|consen 49 TKSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTV 128 (391)
T ss_pred cccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEe
Confidence 34555779999999999999999999999999999999999999999889999999887777788999999999999999
Q ss_pred chhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736 104 KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (293)
Q Consensus 104 ~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (293)
+++.+.+++.++.++++||+|++||+|+++|+++...||.+..+.+..++|+||+|||+.+....++.......+.++..
T Consensus 129 k~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~ 208 (391)
T KOG2743|consen 129 KDNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATR 208 (391)
T ss_pred cchHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888877666566778999
Q ss_pred HHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCC
Q 022736 184 QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSS 263 (293)
Q Consensus 184 qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~ 263 (293)
|+.+||.|++||+|+++++ .+..+++.++.+|..|+++++.+++++...++.+.||+-+.-..+...++.. .+.
T Consensus 209 QiA~AD~II~NKtDli~~e----~~~~l~q~I~~INslA~m~~Tky~~vdlsnvLdi~ayds~ss~nl~~k~~~~--~~~ 282 (391)
T KOG2743|consen 209 QIALADRIIMNKTDLVSEE----EVKKLRQRIRSINSLAQMIETKYSRVDLSNVLDIHAFDSESSINLDKKLQHS--GGT 282 (391)
T ss_pred HHhhhheeeeccccccCHH----HHHHHHHHHHHhhhHHHhhhhhhccccHHHhcccccccccccchhhhhhccC--CCC
Confidence 9999999999999999975 5799999999999999999999999999999999999987444443333322 233
Q ss_pred CCCCCCCEEEEEEecCCCCCHHHHHHhhh
Q 022736 264 QNLHDNNVRTLSICEPLAVNLDKVILQIA 292 (293)
Q Consensus 264 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 292 (293)
+.+|+.++.++.+..+...+.+.+..||+
T Consensus 283 ~~h~d~~i~ti~~~~~~~~~~E~~n~wl~ 311 (391)
T KOG2743|consen 283 QIHLDQSIGTITFEVPGLAKEEHLNMWLQ 311 (391)
T ss_pred CcccCCCcceEEEEeCCccCHHHHHHHHH
Confidence 44568899999999999999999999985
No 2
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=100.00 E-value=1.1e-47 Score=342.29 Aligned_cols=243 Identities=41% Similarity=0.681 Sum_probs=206.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccch-hhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~-~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+||++|+||+|||||||+|+|++...|+|+||++||+|+ +++|. ..+.... ++++|++|||||||+++++.+.
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGE-vgID~~~~l~~~~-----e~~~El~nGCICCT~r~dl~~~ 74 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGE-VGIDGGALLSDTG-----EEVVELTNGCICCTVRDDLLPA 74 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCcc-ccccCCCccccCC-----ccEEEeCCceEEEeccchhHHH
Confidence 699999999999999999999998889999999999998 99995 6665532 4689999999999999999999
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
+.+|....+.+|+++|||+|+++|.++.++++..+.+.....+|.+|+|||+.++....... ...+..|+++||+
T Consensus 75 ~~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~-----~~~~~~Qia~AD~ 149 (323)
T COG0523 75 LERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAI-----AELAEDQLAFADV 149 (323)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHH-----HHHHHHHHHhCcE
Confidence 99999866779999999999999999999998777888999999999999999998876531 2456799999999
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhcc-C-CCCCCCC
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY-K-SSQNLHD 268 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~-~-~~~~~~~ 268 (293)
|++||+|+++++ .++.+++.++++||.|+++...++..+...++....++... ...+...+.. . +.+.+|+
T Consensus 150 ivlNK~Dlv~~~----~l~~l~~~l~~lnp~A~i~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~~h~h~~~~ 222 (323)
T COG0523 150 IVLNKTDLVDAE----ELEALEARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDR---DVGRTSPLFSDHQHDHEHDE 222 (323)
T ss_pred EEEecccCCCHH----HHHHHHHHHHHhCCCCeEEEccccCCCHHHhhccccccccc---cccccCccccccCCCchhcc
Confidence 999999999976 47999999999999999999999999888888888877554 2222222211 1 2222333
Q ss_pred CCEEEEEEecCCCCCHHHHHHhhh
Q 022736 269 NNVRTLSICEPLAVNLDKVILQIA 292 (293)
Q Consensus 269 ~~~~~~~~~~~~p~~~~~~~~~l~ 292 (293)
++++++++..++|++|++|.+||.
T Consensus 223 ~~i~s~~~~~~~p~~~~~l~~~l~ 246 (323)
T COG0523 223 GGISSFSVRADRPFDPERLEAFLD 246 (323)
T ss_pred cCceEEEEecCCCCCHHHHHHHHH
Confidence 469999999999999999999985
No 3
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=100.00 E-value=3.5e-44 Score=321.36 Aligned_cols=241 Identities=31% Similarity=0.509 Sum_probs=198.7
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
+.++||++|+||+|||||||+|++++...+.+++|+.||+|+ +++|..++.... .+++++.|||+||++++++.
T Consensus 1 ~~~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~-v~iD~~ll~~~~-----~~v~eL~~GCiCCs~~~~l~ 74 (318)
T PRK11537 1 MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELE 74 (318)
T ss_pred CCccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCC-ccccHHHHhCcC-----ceEEEECCCEEEEccCchHH
Confidence 347999999999999999999999988778999999999997 899998886522 35789999999999999999
Q ss_pred HHHHHHHhhc----CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 109 QALEQLVQRK----ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 109 ~~l~~l~~~~----~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
.++.+++... .++|+|+|||+|+++|.++.+.++.++.+....+++.+|+|||+.++...++. ......|
T Consensus 75 ~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~------~~~~~~Q 148 (318)
T PRK11537 75 DALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ------FTIAQSQ 148 (318)
T ss_pred HHHHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc------cHHHHHH
Confidence 9999997531 26999999999999999999988767778888999999999999988776543 3456799
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCC
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQ 264 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~ 264 (293)
+++||+||+||+|++++. +++++.++.+||.|+++.+.++.++...++.+..+........ .....+.+
T Consensus 149 i~~AD~IvlnK~Dl~~~~------~~~~~~l~~lnp~a~i~~~~~~~v~~~~l~~~~~~~~~~~~~~-----~~~~~~~~ 217 (318)
T PRK11537 149 VGYADRILLTKTDVAGEA------EKLRERLARINARAPVYTVVHGDIDLSLLFNTNGFMLEENVVS-----TKPRFHFI 217 (318)
T ss_pred HHhCCEEEEeccccCCHH------HHHHHHHHHhCCCCEEEEeccCCCCHHHHhCCCCcCccccccc-----cCcccccC
Confidence 999999999999999742 6899999999999999999999998888876654432111000 00001112
Q ss_pred CCCCCCEEEEEEecCCCCCHHHHHHhhh
Q 022736 265 NLHDNNVRTLSICEPLAVNLDKVILQIA 292 (293)
Q Consensus 265 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 292 (293)
++|++++.+++++.++|++|++|..||+
T Consensus 218 ~~~~~~i~s~~~~~~~p~~~~~l~~~L~ 245 (318)
T PRK11537 218 ADKQNDISSIVVELDYPVDISEVSRVME 245 (318)
T ss_pred CcccCceEEEEEEcCCCCCHHHHHHHHH
Confidence 2456789999999999999999999985
No 4
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=100.00 E-value=1.2e-42 Score=314.53 Aligned_cols=255 Identities=31% Similarity=0.510 Sum_probs=198.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCC-CCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.++||++|+||+|||||||+|++++...+.+++++.||+|+ .++|..++.... .+...+++++++|||+||++++++.
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~-~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~ 80 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGD-LGIDGEILKACGIEGCSEENIVELANGCICCTVADDFI 80 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCcc-ccchHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence 46899999999999999999999988778999999999997 899999887522 1112346899999999999999999
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHh--------hhc-------
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--------KYR------- 173 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~--------~~~------- 173 (293)
.+|.+++....++|+|+|||+|+++|.++.+.+. .+.+....+++.||+|||+.++..... ...
T Consensus 81 ~~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~-~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (341)
T TIGR02475 81 PTMTKLLARRQRPDHILIETSGLALPKPLVQAFQ-WPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLD 159 (341)
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhc-CccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccc
Confidence 9999998655789999999999999999999874 355667789999999999997753211 000
Q ss_pred ccCC-chHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCC-CEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 174 HLSS-YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSL-AHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 174 ~~~~-~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~-a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
.... ...+..|+++||+|++||+|+++++ .++++++.|+.+||. ++++++.++.++...++.+..+........
T Consensus 160 ~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~----~l~~~~~~l~~~~~~~a~i~~~~~~~v~~~~ll~~~~~~~~~~~~~ 235 (341)
T TIGR02475 160 HETPLEELFEDQLACADLVILNKADLLDAA----GLARVRAEIAAELPRAVKIVEASHGEVDARVLLGLGAAAEDDLDNR 235 (341)
T ss_pred ccchHHHHHHHHHHhCCEEEEeccccCCHH----HHHHHHHHHHHhCCCCCEEEEcccCCCCHHHHhCCCCcChhhhhcC
Confidence 0000 1234699999999999999999875 578999999998885 699999999999988888754332221111
Q ss_pred hhhhhhhccCCCCCCCCCCEEEEEEecCCCCCHHHHHHhhhC
Q 022736 252 EGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS 293 (293)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 293 (293)
..+.. ...+++++++++++++++.++|+++++|+.||++
T Consensus 236 ~~~~~---~~~~~~~~~~~i~s~~~~~~~p~~~~~~~~~L~~ 274 (341)
T TIGR02475 236 PSHHD---FEGGEEHDHDEFDSVVVDLGEVADPAALRQRLER 274 (341)
T ss_pred ccccc---ccCCCCCCCCCEEEEEEEcCCCCCHHHHHHHHHh
Confidence 11110 0011233446799999999999999999999974
No 5
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=100.00 E-value=8.6e-36 Score=247.34 Aligned_cols=175 Identities=49% Similarity=0.798 Sum_probs=141.4
Q ss_pred eEEEEEecCCCcHHHHHHHHH-ccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYIL-NGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll-~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
|+++|+||+|||||||+++++ ...++.+++++.||+|. .++|..++.... ..+.++.+||+||+.++++..++
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~-~~iD~~~l~~~~-----~~v~~l~~gcicc~~~~~~~~~l 74 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGE-VNIDAELLQEDG-----VPVVELNNGCICCTLRDDLVEAL 74 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTS-THHHHHHHHTTT------EEEEECTTTESS-TTS-HHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccc-cccchhhhcccc-----eEEEEecCCCcccccHHHHHHHH
Confidence 899999999999999999999 56779999999999997 899999987632 24789999999999999999999
Q ss_pred HHHHhhc-CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 112 EQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 112 ~~l~~~~-~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
.++.... .++|+||||++|+++|.++. + ....+.....++.+|+|||+.++...... ...+..|++.||+
T Consensus 75 ~~l~~~~~~~~d~IiIE~sG~a~p~~l~--~-~~~~~~~~~~~~~iI~vVDa~~~~~~~~~------~~~~~~Qi~~ADv 145 (178)
T PF02492_consen 75 RRLLREYEERPDRIIIETSGLADPAPLI--L-QDPPLKEDFRLDSIITVVDATNFDELENI------PELLREQIAFADV 145 (178)
T ss_dssp HHHCCCCHGC-SEEEEEEECSSGGGGHH--H-HSHHHHHHESESEEEEEEEGTTHGGHTTH------CHHHHHHHCT-SE
T ss_pred HHHHHhcCCCcCEEEECCccccccchhh--h-ccccccccccccceeEEeccccccccccc------hhhhhhcchhcCE
Confidence 9998753 37999999999999999982 2 25667778899999999999988432221 3556799999999
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~ 225 (293)
+++||+|+++.++ .++++++.++++||.|+++
T Consensus 146 IvlnK~D~~~~~~---~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 146 IVLNKIDLVSDEQ---KIERVREMIRELNPKAPIV 177 (178)
T ss_dssp EEEE-GGGHHHH-----HHHHHHHHHHH-TTSEEE
T ss_pred EEEeccccCChhh---HHHHHHHHHHHHCCCCEEe
Confidence 9999999998752 4689999999999999986
No 6
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.97 E-value=3.8e-31 Score=215.17 Aligned_cols=154 Identities=51% Similarity=0.873 Sum_probs=133.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
|+++++|++|||||||++++++...+.+++++.+++|+ .++|...+.... ..++++.+||+||++++++..++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~-~~~d~~~~~~~~-----~~v~~l~~GCiCC~~~~~l~~~l~ 74 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGE-VGIDNQLVVDTD-----EEIIEMNNGCICCTVRGDLIRALL 74 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCc-cchhHHHHhCCC-----ceEEEeCCCEeEeeCchhHHHHHH
Confidence 78999999999999999999987668899999999997 888887776422 357899999999999999999996
Q ss_pred HHHh----hcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 113 QLVQ----RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 113 ~l~~----~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
+++. ...++|+|+|||||+++|.++.+.++.+..+....+++.++++||+.++..+++. ...+..|+++|
T Consensus 75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~------~~~~~~Qi~~a 148 (158)
T cd03112 75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQ------QTEAQSQIAFA 148 (158)
T ss_pred HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhc------cHHHHHHHHHC
Confidence 5543 3468999999999999999999887777778888999999999999998887654 24567999999
Q ss_pred CEEEEeCCCC
Q 022736 189 DVVILNKVDL 198 (293)
Q Consensus 189 ~iivlNK~D~ 198 (293)
|++|+||+|+
T Consensus 149 d~ivlnk~dl 158 (158)
T cd03112 149 DRILLNKTDL 158 (158)
T ss_pred CEEEEecccC
Confidence 9999999996
No 7
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=1e-25 Score=194.52 Aligned_cols=185 Identities=23% Similarity=0.334 Sum_probs=137.5
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..++.+++|+|+||+|||||+|+|+ |+|++++++.+++ ++..+..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~----G~KisIvS~k~QT----TR~~I~G--------------------------- 47 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALV----GQKISIVSPKPQT----TRNRIRG--------------------------- 47 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHh----cCceEeecCCcch----hhhheeE---------------------------
Confidence 4689999999999999999999999 9999999999997 4444332
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
+...++.++||+||||++.|......++...+..+...+|.+++|||+.......+.. ..+.+.....+
T Consensus 48 ------I~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~-----il~~lk~~~~p 116 (298)
T COG1159 48 ------IVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEF-----ILEQLKKTKTP 116 (298)
T ss_pred ------EEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHH-----HHHHHhhcCCC
Confidence 1113567899999999999988888888888888899999999999998744433321 12222333459
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh-----ccCCC
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH-----QYKSS 263 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~-----~~~~~ 263 (293)
.++++||+|+++++. .+..+.+.++.. .++.+++++||.+|.+++.|.+.+.++ .+||.
T Consensus 117 vil~iNKID~~~~~~---~l~~~~~~~~~~-------------~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~ 180 (298)
T COG1159 117 VILVVNKIDKVKPKT---VLLKLIAFLKKL-------------LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPE 180 (298)
T ss_pred eEEEEEccccCCcHH---HHHHHHHHHHhh-------------CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCCh
Confidence 999999999998762 123444444333 356789999999999999998888653 34565
Q ss_pred CCCCCCCEEEEE
Q 022736 264 QNLHDNNVRTLS 275 (293)
Q Consensus 264 ~~~~~~~~~~~~ 275 (293)
++.+|.+.+++.
T Consensus 181 d~itD~~~rf~~ 192 (298)
T COG1159 181 DQITDRPERFLA 192 (298)
T ss_pred hhccCChHHHHH
Confidence 565555544443
No 8
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.92 E-value=2.9e-25 Score=194.36 Aligned_cols=195 Identities=21% Similarity=0.215 Sum_probs=147.6
Q ss_pred ccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCc
Q 022736 19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANG 97 (293)
Q Consensus 19 ~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~g 97 (293)
....+|..+.+.+..++.|+|+||||||||++++++. ....+++++.+|+++ .+ |..++.... ...+++++|
T Consensus 91 ~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t-~~-Da~rI~~~g-----~pvvqi~tG 163 (290)
T PRK10463 91 LAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQT-VN-DAARIRATG-----TPAIQVNTG 163 (290)
T ss_pred HHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCc-HH-HHHHHHhcC-----CcEEEecCC
Confidence 4556677777889999999999999999999999986 345689999999997 44 777766422 246889999
Q ss_pred ceeeccchhHHHHHHHHHhhcCCCCEEEEecCCC-CCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccC
Q 022736 98 CICCTVKHSLVQALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLS 176 (293)
Q Consensus 98 cicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~-~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~ 176 (293)
|+||..+.++..++..|.. .+.+++|||+.|. ..|..+. +....+ +++++...+.+ ...
T Consensus 164 ~~Chl~a~mv~~Al~~L~~--~~~d~liIEnvGnLvcPa~fd--------lge~~~----v~vlsV~eg~d------kpl 223 (290)
T PRK10463 164 KGCHLDAQMIADAAPRLPL--DDNGILFIENVGNLVCPASFD--------LGEKHK----VAVLSVTEGED------KPL 223 (290)
T ss_pred CCCcCcHHHHHHHHHHHhh--cCCcEEEEECCCCccCCCccc--------hhhcee----EEEEECccccc------cch
Confidence 9999999999999998864 5679999999994 6775321 222223 24444443321 111
Q ss_pred CchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 177 SYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 177 ~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+++ .|++.||++|+||+|+++... ++++.+.+.++.+||.+ +++++|+++|+|+++|.+|+.
T Consensus 224 Kyp---~~f~~ADIVVLNKiDLl~~~~--~dle~~~~~lr~lnp~a-------------~I~~vSA~tGeGld~L~~~L~ 285 (290)
T PRK10463 224 KYP---HMFAAASLMLLNKVDLLPYLN--FDVEKCIACAREVNPEI-------------EIILISATSGEGMDQWLNWLE 285 (290)
T ss_pred hcc---chhhcCcEEEEEhHHcCcccH--HHHHHHHHHHHhhCCCC-------------cEEEEECCCCCCHHHHHHHHH
Confidence 234 557889999999999986422 46788889999999875 467899999999999999997
Q ss_pred hh
Q 022736 257 EH 258 (293)
Q Consensus 257 ~~ 258 (293)
+.
T Consensus 286 ~~ 287 (290)
T PRK10463 286 TQ 287 (290)
T ss_pred Hh
Confidence 53
No 9
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.91 E-value=4.5e-24 Score=181.33 Aligned_cols=192 Identities=19% Similarity=0.258 Sum_probs=137.9
Q ss_pred cCcccCCCCceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee
Q 022736 22 SNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC 100 (293)
Q Consensus 22 ~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic 100 (293)
.++..+....+|+++|+|++|||||||++++++. ..+.+++++.++++. ++|...+...+ ..++++.+||+|
T Consensus 12 ~~~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~--~~D~~~~~~~~-----~~~~~l~~gcic 84 (207)
T TIGR00073 12 KNRERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVIT--KFDAERLRKYG-----APAIQINTGKEC 84 (207)
T ss_pred HHHHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--cccHHHHHHcC-----CcEEEEcCCCcc
Confidence 4556667778999999999999999999999986 445799999999974 56777665422 257899999999
Q ss_pred eccchhHHHHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736 101 CTVKHSLVQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (293)
Q Consensus 101 c~~~~~l~~~l~~l~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (293)
|....++..++..+.. .++|+|||||+| +..+..+ .......+.|+|+........
T Consensus 85 ~~~~~~~~~~l~~~~~--~~~d~IiIEt~G~l~~~~~~------------~~~~~~~i~Vvd~~~~d~~~~--------- 141 (207)
T TIGR00073 85 HLDAHMVAHALEDLPL--DDIDLLFIENVGNLVCPADF------------DLGEHMRVVLLSVTEGDDKPL--------- 141 (207)
T ss_pred cCChHHHHHHHHHhcc--CCCCEEEEecCCCcCCCccc------------ccccCeEEEEEecCcccchhh---------
Confidence 9776666666665543 367999999999 4433211 011223357888865432211
Q ss_pred HHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 180 EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 180 ~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
....+++.|+++++||+|+.+... ....++.+.+++++|. .+++.+|+++++|++++.+|+.++
T Consensus 142 ~~~~~~~~a~iiv~NK~Dl~~~~~--~~~~~~~~~l~~~~~~-------------~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 142 KYPGMFKEADLIVINKADLAEAVG--FDVEKMKADAKKINPE-------------AEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhHhHHhhCCEEEEEHHHccccch--hhHHHHHHHHHHhCCC-------------CCEEEEECCCCCCHHHHHHHHHHh
Confidence 122446789999999999986421 1356677778777764 356889999999999999998653
No 10
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.90 E-value=9.3e-23 Score=171.79 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=135.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhc-cCcceeeccchhHH--
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL-ANGCICCTVKHSLV-- 108 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l-~~gcicc~~~~~l~-- 108 (293)
..++|+|++|||||||++++++. ....+++++.++++. ..+...+.... .+..+..+.+ .+||.||+.+.++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~--~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT--QEDAEFLVKNS-ALPPERILGVETGGCPHTAIREDASMN 78 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC--hhHHHHHHHcC-CCCcCceehhhcCCCccceeccCHHHH
Confidence 35789999999999999999986 445678999999985 33554443321 1111223333 79999999999984
Q ss_pred -HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 109 -QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 109 -~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
.+|.++..+..++|+++|||+|..- ...+ .+. -.+.+|+|+|+.++..... ....|+..
T Consensus 79 ~~~L~~l~~~~~~~D~iiIEt~G~~l----~~~~--~~~-----l~~~~i~vvD~~~~~~~~~---------~~~~qi~~ 138 (199)
T TIGR00101 79 LEAVAEMEARFPPLEMVFIESGGDNL----SATF--SPE-----LADLTIFVIDVAAGDKIPR---------KGGPGITR 138 (199)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCc----cccc--chh-----hhCcEEEEEEcchhhhhhh---------hhHhHhhh
Confidence 5556665444579999999999421 1111 111 1467899999987665321 12468999
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
||++++||+|+.+... ..++.+.+.++.+||.+ +++.+|+++|+|++++.+|+.++.
T Consensus 139 ad~~~~~k~d~~~~~~--~~~~~~~~~~~~~~~~~-------------~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 139 SDLLVINKIDLAPMVG--ADLGVMERDAKKMRGEK-------------PFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred ccEEEEEhhhcccccc--ccHHHHHHHHHHhCCCC-------------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 9999999999985311 35788889999998864 457899999999999999997653
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=1.6e-20 Score=151.00 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=102.9
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
|+++|.||+|||||+|+|+ |.+ +.+.|.+|+|.......+.
T Consensus 3 ialvG~PNvGKStLfN~Lt----g~~-~~v~n~pG~Tv~~~~g~~~---------------------------------- 43 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALT----GAK-QKVGNWPGTTVEKKEGIFK---------------------------------- 43 (156)
T ss_dssp EEEEESTTSSHHHHHHHHH----TTS-EEEEESTTSSSEEEEEEEE----------------------------------
T ss_pred EEEECCCCCCHHHHHHHHH----CCC-ceecCCCCCCeeeeeEEEE----------------------------------
Confidence 7899999999999999999 777 5579999974432221111
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHH--HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736 115 VQRKERLDHILLETTGLANPAPLA--SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~--~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv 192 (293)
.++.++.+||+||+....+.. +... ..++ ...+.|.++.|+|++++...+. ....+.+++.|.+++
T Consensus 44 ---~~~~~~~lvDlPG~ysl~~~s~ee~v~-~~~l-~~~~~D~ii~VvDa~~l~r~l~-------l~~ql~e~g~P~vvv 111 (156)
T PF02421_consen 44 ---LGDQQVELVDLPGIYSLSSKSEEERVA-RDYL-LSEKPDLIIVVVDATNLERNLY-------LTLQLLELGIPVVVV 111 (156)
T ss_dssp ---ETTEEEEEEE----SSSSSSSHHHHHH-HHHH-HHTSSSEEEEEEEGGGHHHHHH-------HHHHHHHTTSSEEEE
T ss_pred ---ecCceEEEEECCCcccCCCCCcHHHHH-HHHH-hhcCCCEEEEECCCCCHHHHHH-------HHHHHHHcCCCEEEE
Confidence 133568999999976643332 1111 1222 1357899999999998766543 234556778999999
Q ss_pred EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+||+|.+.......+.+.+.+.+. -+++++||.+++|+++|.+.+
T Consensus 112 lN~~D~a~~~g~~id~~~Ls~~Lg------------------~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 112 LNKMDEAERKGIEIDAEKLSERLG------------------VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EETHHHHHHTTEEE-HHHHHHHHT------------------S-EEEEBTTTTBTHHHHHHHH
T ss_pred EeCHHHHHHcCCEECHHHHHHHhC------------------CCEEEEEeCCCcCHHHHHhhC
Confidence 999999877655455666666653 357899999999999987653
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1e-19 Score=165.66 Aligned_cols=160 Identities=23% Similarity=0.249 Sum_probs=122.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
|+|+|+|+||+|||||+|+|+ +++.|+++..+|. +++.+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~----g~r~AIV~D~pGv----TRDr~y~~~----------------------------- 46 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT----GRRIAIVSDTPGV----TRDRIYGDA----------------------------- 46 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh----CCeeeEeecCCCC----ccCCcccee-----------------------------
Confidence 899999999999999999999 9999999999996 555554310
Q ss_pred HHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736 113 QLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii 191 (293)
...+..+.+|||+|+.... .-+...+...++....++|+++||||+..+.+..+.. ...++.....|.++
T Consensus 47 ----~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~-----ia~~Lr~~~kpviL 117 (444)
T COG1160 47 ----EWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEE-----IAKILRRSKKPVIL 117 (444)
T ss_pred ----EEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCCEEE
Confidence 1345679999999988533 2233334456677788999999999999877766653 45666766789999
Q ss_pred EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
|+||+|..+.++ . . . ....+.+.+++++||..|.|+++|.+.+.+..
T Consensus 118 vvNK~D~~~~e~------~-~---~-----------efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 118 VVNKIDNLKAEE------L-A---Y-----------EFYSLGFGEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred EEEcccCchhhh------h-H---H-----------HHHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence 999999874431 1 1 1 11225678999999999999999999887654
No 13
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=7.8e-19 Score=156.84 Aligned_cols=168 Identities=24% Similarity=0.362 Sum_probs=112.5
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..+..+|+|+|.+|||||||+|+|+ |.+++++++.++++. ..+.. +
T Consensus 2 ~~~~g~V~iiG~pn~GKSTLin~L~----g~~~~~vs~~~~tt~----~~i~~-----------------i--------- 47 (292)
T PRK00089 2 GFKSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTR----HRIRG-----------------I--------- 47 (292)
T ss_pred CceeEEEEEECCCCCCHHHHHHHHh----CCceeecCCCCCccc----ccEEE-----------------E---------
Confidence 3578999999999999999999999 888999888887621 11110 0
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
. ..++.+++++||||+.++.......+..........+|.+++|+|+......... .+...+.+...+
T Consensus 48 ------~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~-----~i~~~l~~~~~p 115 (292)
T PRK00089 48 ------V-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDE-----FILEKLKKVKTP 115 (292)
T ss_pred ------E-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHH-----HHHHHHhhcCCC
Confidence 0 0134679999999998876555443334444555789999999999872221111 012223333568
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.++|+||+|+.... ..+...++.+... .++.+++++|++++.|++++.+++.+.
T Consensus 116 vilVlNKiDl~~~~------~~l~~~~~~l~~~----------~~~~~i~~iSA~~~~gv~~L~~~L~~~ 169 (292)
T PRK00089 116 VILVLNKIDLVKDK------EELLPLLEELSEL----------MDFAEIVPISALKGDNVDELLDVIAKY 169 (292)
T ss_pred EEEEEECCcCCCCH------HHHHHHHHHHHhh----------CCCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 99999999998432 2233333333221 123568899999999999999888654
No 14
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=8.5e-19 Score=154.85 Aligned_cols=161 Identities=20% Similarity=0.227 Sum_probs=105.6
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
.++++|.+|||||||+|+|+ +.+++++++.++++.. .+.. +
T Consensus 2 ~V~liG~pnvGKSTLln~L~----~~~~~~vs~~~~TTr~----~i~~----i--------------------------- 42 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLH----GQKISITSPKAQTTRN----RISG----I--------------------------- 42 (270)
T ss_pred EEEEECCCCCCHHHHHHHHh----CCcEeecCCCCCcccC----cEEE----E---------------------------
Confidence 58899999999999999999 7888999998887322 1110 0
Q ss_pred HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEE
Q 022736 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivl 193 (293)
...++.+++|+||||+.++.......+..........+|.+++|+|++........ +...+.....+.++|+
T Consensus 43 --~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~------i~~~l~~~~~p~ilV~ 114 (270)
T TIGR00436 43 --HTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEF------VLTKLQNLKRPVVLTR 114 (270)
T ss_pred --EEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHH------HHHHHHhcCCCEEEEE
Confidence 00133568999999987753322222223334455689999999999865332111 2333444567889999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
||+|+.+.. .+...+..+... ..+.+++++||++|.|+++|.+++.+.
T Consensus 115 NK~Dl~~~~-------~~~~~~~~~~~~----------~~~~~v~~iSA~~g~gi~~L~~~l~~~ 162 (270)
T TIGR00436 115 NKLDNKFKD-------KLLPLIDKYAIL----------EDFKDIVPISALTGDNTSFLAAFIEVH 162 (270)
T ss_pred ECeeCCCHH-------HHHHHHHHHHhh----------cCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 999997532 122222222110 123468999999999999999988653
No 15
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=4.1e-19 Score=161.46 Aligned_cols=165 Identities=18% Similarity=0.274 Sum_probs=108.8
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+..-++++|.+|+|||||+|+|+ +.++++++..+++|.......+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~----~~k~~ivs~k~~tTr~~~~~~~~----------------------------- 96 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRII----GEKLSIVTPKVQTTRSIITGIIT----------------------------- 96 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHh----CCceeeccCCCCCccCcEEEEEE-----------------------------
Confidence 344578999999999999999999 77888888888763221110000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
.++.+++|+||||+.++.......+..........+|++++|+|+.......... +...+.+...+.
T Consensus 97 --------~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~-----il~~l~~~~~p~ 163 (339)
T PRK15494 97 --------LKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHN-----ILDKLRSLNIVP 163 (339)
T ss_pred --------eCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCE
Confidence 1345689999999876543332222233334456899999999987543322210 222334445678
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
++|+||+|+.+. ....+.+.++..++ ...++++||++|.|++++.+|+.+.
T Consensus 164 IlViNKiDl~~~-----~~~~~~~~l~~~~~-------------~~~i~~iSAktg~gv~eL~~~L~~~ 214 (339)
T PRK15494 164 IFLLNKIDIESK-----YLNDIKAFLTENHP-------------DSLLFPISALSGKNIDGLLEYITSK 214 (339)
T ss_pred EEEEEhhcCccc-----cHHHHHHHHHhcCC-------------CcEEEEEeccCccCHHHHHHHHHHh
Confidence 999999998643 23455555544332 2467899999999999999998753
No 16
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.78 E-value=3.7e-18 Score=153.37 Aligned_cols=193 Identities=17% Similarity=0.192 Sum_probs=121.9
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhh------hc--CCCCcchhhhhhccCcce
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMI------NE--GEGGALVEEWVELANGCI 99 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~------~~--~~~~~~~~~~~~l~~gci 99 (293)
.+..+|.|+|++|||||||++.|... ..+.+++++..|+++ ...+..++ .. ...++ ++...++
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s-~~~~gallgd~~r~~~~~~~~~~----~~r~~~~-- 126 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS-TRTGGSILGDKTRMERLSRHPNA----FIRPSPS-- 126 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc-cccchhhhchHhHHHhhcCCCCe----EEEecCC--
Confidence 45678999999999999999998764 458899999999986 33233332 21 11111 1222223
Q ss_pred eeccch---hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccC
Q 022736 100 CCTVKH---SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLS 176 (293)
Q Consensus 100 cc~~~~---~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~ 176 (293)
||.+.+ .+.+++.. +. ..++|++||||+|+....... ...+|.+++++++........
T Consensus 127 ~~~l~~~a~~~~~~~~~-~~-~~g~d~viieT~Gv~qs~~~i-----------~~~aD~vlvv~~p~~gd~iq~------ 187 (332)
T PRK09435 127 SGTLGGVARKTRETMLL-CE-AAGYDVILVETVGVGQSETAV-----------AGMVDFFLLLQLPGAGDELQG------ 187 (332)
T ss_pred cccccchHHHHHHHHHH-Hh-ccCCCEEEEECCCCccchhHH-----------HHhCCEEEEEecCCchHHHHH------
Confidence 666653 23333332 22 468999999999988543221 134788888887544332211
Q ss_pred CchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 177 SYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 177 ~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
....+++.+|++|+||+|+++..........++..++..+|... . ...+++.+|+.+++|+++|.+++.
T Consensus 188 ---~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~------~--w~~pVi~vSA~~g~GIdeL~~~I~ 256 (332)
T PRK09435 188 ---IKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDP------G--WQPPVLTCSALEGEGIDEIWQAIE 256 (332)
T ss_pred ---HHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhccccccc------C--CCCCEEEEECCCCCCHHHHHHHHH
Confidence 11236788999999999998754322233444445544443221 0 014688999999999999999987
Q ss_pred hhc
Q 022736 257 EHQ 259 (293)
Q Consensus 257 ~~~ 259 (293)
++.
T Consensus 257 ~~~ 259 (332)
T PRK09435 257 DHR 259 (332)
T ss_pred HHH
Confidence 653
No 17
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.77 E-value=1.1e-18 Score=142.34 Aligned_cols=185 Identities=23% Similarity=0.268 Sum_probs=132.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+-.+.|.|++|||||||+.++++. ....+++||.+|.-+ .-|...+... .+ ...+....|-.|+--......+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t--~~Da~~l~~~-~g---~~i~~v~TG~~CH~da~m~~~a 86 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT--KEDADRLRKL-PG---EPIIGVETGKGCHLDASMNLEA 86 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec--hhhHHHHHhC-CC---CeeEEeccCCccCCcHHHHHHH
Confidence 357899999999999999999986 345899999999875 3455555541 11 2334444554456445566778
Q ss_pred HHHHHhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 111 LEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
++++..+....|++|||+.| +..+.+.. +.. ..-|+|+|...+...-... ++. +..+|
T Consensus 87 i~~l~~~~~~~Dll~iEs~GNL~~~~sp~--------L~d----~~~v~VidvteGe~~P~K~-----gP~----i~~aD 145 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVGNLVCPFSPD--------LGD----HLRVVVIDVTEGEDIPRKG-----GPG----IFKAD 145 (202)
T ss_pred HHHHhhcCCcCCEEEEecCcceecccCcc--------hhh----ceEEEEEECCCCCCCcccC-----CCc----eeEee
Confidence 88887765568999999999 66653222 111 1458888887654322110 232 34599
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
++|+||+|+++.-+ ++++.+.+..+++||.++ ++.+|++||+|++++.+|+...
T Consensus 146 llVInK~DLa~~v~--~dlevm~~da~~~np~~~-------------ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 146 LLVINKTDLAPYVG--ADLEVMARDAKEVNPEAP-------------IIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred EEEEehHHhHHHhC--ccHHHHHHHHHHhCCCCC-------------EEEEeCCCCcCHHHHHHHHHhh
Confidence 99999999998654 588999999999999864 4668999999999999998753
No 18
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.5e-17 Score=136.78 Aligned_cols=182 Identities=16% Similarity=0.216 Sum_probs=125.8
Q ss_pred ccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccC
Q 022736 17 TTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELAN 96 (293)
Q Consensus 17 ~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~ 96 (293)
+..++......+....|-|+++|++|+|||||||+|++ .++.|-+++.||.|..+....+
T Consensus 9 f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~---~k~LArtSktPGrTq~iNff~~----------------- 68 (200)
T COG0218 9 FITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTN---QKNLARTSKTPGRTQLINFFEV----------------- 68 (200)
T ss_pred EEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhC---CcceeecCCCCCccceeEEEEe-----------------
Confidence 44567777788888999999999999999999999993 2457999999997443332211
Q ss_pred cceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCC---cHHHH--HhhhcchhhccccccccEEEEEcccchHHHHhh
Q 022736 97 GCICCTVKHSLVQALEQLVQRKERLDHILLETTGLAN---PAPLA--SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK 171 (293)
Q Consensus 97 gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~---~~~~~--~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~ 171 (293)
...+.+||.||+.- |.... +.-+...++.....+..++.++|+.+.....+.
T Consensus 69 -----------------------~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~ 125 (200)
T COG0218 69 -----------------------DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR 125 (200)
T ss_pred -----------------------cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH
Confidence 12378999999543 22221 223345677777789999999999998877665
Q ss_pred hcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 172 YRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 172 ~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
. ..+++.+.+.+.++++||+|.++..+....+..++..+..-.+. . ..++..|+.++.|++++
T Consensus 126 e-----m~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~-~-----------~~~~~~ss~~k~Gi~~l 188 (200)
T COG0218 126 E-----MIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD-D-----------QWVVLFSSLKKKGIDEL 188 (200)
T ss_pred H-----HHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc-c-----------ceEEEEecccccCHHHH
Confidence 3 57788888999999999999998764311222222222211111 0 11566788888999988
Q ss_pred hhhhhhh
Q 022736 252 EGLLEEH 258 (293)
Q Consensus 252 ~~~l~~~ 258 (293)
...+.+.
T Consensus 189 ~~~i~~~ 195 (200)
T COG0218 189 KAKILEW 195 (200)
T ss_pred HHHHHHH
Confidence 8777543
No 19
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=9.2e-18 Score=152.90 Aligned_cols=167 Identities=21% Similarity=0.317 Sum_probs=124.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
..-++|+|.||+|||||+|+|+ ++.-+++++.+|+ +++.+.. ..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~il----geeR~Iv~~~aGT----TRD~I~~---------~~------------------- 221 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAIL----GEERVIVSDIAGT----TRDSIDI---------EF------------------- 221 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhc----cCceEEecCCCCc----cccceee---------eE-------------------
Confidence 4457889999999999999999 7778999999997 3333221 00
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHH---hhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~---~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
..++-.|.+|||+|+-....+.+ .+...+.++...+++.+++|+|++......+.. ........+.+
T Consensus 222 -----e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-----ia~~i~~~g~~ 291 (444)
T COG1160 222 -----ERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-----IAGLIEEAGRG 291 (444)
T ss_pred -----EECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-----HHHHHHHcCCC
Confidence 12455789999999887666654 233445667778899999999999876655532 35566677889
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+||+||+|++..++ ..++.++..++...|. +++.+++.+||.+|.+++.+.+.+.
T Consensus 292 ~vIvvNKWDl~~~~~--~~~~~~k~~i~~~l~~----------l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 292 IVIVVNKWDLVEEDE--ATMEEFKKKLRRKLPF----------LDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred eEEEEEccccCCchh--hHHHHHHHHHHHHhcc----------ccCCeEEEEEecCCCChHHHHHHHH
Confidence 999999999988632 3567777777765554 4668899999999999888876654
No 20
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=4.2e-17 Score=131.96 Aligned_cols=165 Identities=23% Similarity=0.340 Sum_probs=105.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+...++++|.+|||||||+|+++ +.+++++.+..+++ ...... +
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~----~~~~~~~~~~~~~~----~~~~~~-----------------~----------- 45 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTT----RNRIRG-----------------I----------- 45 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHh----CCceEeccCCCCce----eceEEE-----------------E-----------
Confidence 35679999999999999999999 67777776665531 100000 0
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
....+.+++++||||+..+..................+|.+++++|+......... .....+.+.+.+.+
T Consensus 46 -----~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~-----~~~~~~~~~~~~~i 115 (168)
T cd04163 46 -----YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDE-----FILELLKKSKTPVI 115 (168)
T ss_pred -----EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHH-----HHHHHHHHhCCCEE
Confidence 00124578999999988776554333222233445678899999999875221111 02223344457899
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+||+|+.... .........+...++ ..+++.+|++++.+++++.+++.+
T Consensus 116 iv~nK~Dl~~~~---~~~~~~~~~~~~~~~-------------~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 116 LVLNKIDLVKDK---EDLLPLLEKLKELGP-------------FAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred EEEEchhccccH---HHHHHHHHHHHhccC-------------CCceEEEEeccCCChHHHHHHHHh
Confidence 999999998432 123444444443332 245788999999999999888754
No 21
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.72 E-value=4e-18 Score=145.61 Aligned_cols=191 Identities=21% Similarity=0.264 Sum_probs=107.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCcccc------chhhhhc--CCCCcchhhhhhccCcce
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAMINE--GEGGALVEEWVELANGCI 99 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~------d~~~~~~--~~~~~~~~~~~~l~~gci 99 (293)
.+..+|+|+|+||||||||+++|... ..|++++|+.-||.+ ... |+..+.. ...+++++.+..-.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS-p~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG---- 101 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS-PFTGGALLGDRIRMQELSRDPGVFIRSMATRG---- 101 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG-GCC---SS--GGGCHHHHTSTTEEEEEE---S----
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC-CCCCCcccccHHHhcCcCCCCCEEEeecCcCC----
Confidence 35779999999999999999999875 469999999999976 222 2222222 12333333222111
Q ss_pred eeccchhHHHHHHHH--HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC
Q 022736 100 CCTVKHSLVQALEQL--VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177 (293)
Q Consensus 100 cc~~~~~l~~~l~~l--~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~ 177 (293)
..+-+..+..+. +....+||+|||||.|.....--.. .-+|.+++|+-+...... +
T Consensus 102 ---~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~-----------~~aD~~v~v~~Pg~GD~i-----Q--- 159 (266)
T PF03308_consen 102 ---SLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIA-----------DMADTVVLVLVPGLGDEI-----Q--- 159 (266)
T ss_dssp ---SHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHH-----------TTSSEEEEEEESSTCCCC-----C---
T ss_pred ---CCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHH-----------HhcCeEEEEecCCCccHH-----H---
Confidence 011222222221 1224689999999999886532221 235667777755433211 0
Q ss_pred chHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 178 ~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.....-++.+|++|+||+|+..++ .....++..++...+... . -..+++.+||.+++|+++|.+.+.+
T Consensus 160 -~~KaGimEiaDi~vVNKaD~~gA~---~~~~~l~~~l~l~~~~~~-----~---W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 160 -AIKAGIMEIADIFVVNKADRPGAD---RTVRDLRSMLHLLRERED-----G---WRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp -TB-TTHHHH-SEEEEE--SHHHHH---HHHHHHHHHHHHCSTSCT-----S---B--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred -HHhhhhhhhccEEEEeCCChHHHH---HHHHHHHHHHhhcccccc-----C---CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 011233577999999999966544 345555666654443210 0 0147889999999999999999877
Q ss_pred hc
Q 022736 258 HQ 259 (293)
Q Consensus 258 ~~ 259 (293)
+.
T Consensus 228 ~~ 229 (266)
T PF03308_consen 228 HR 229 (266)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 22
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.70 E-value=8.9e-17 Score=139.03 Aligned_cols=193 Identities=21% Similarity=0.238 Sum_probs=116.4
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhc--------CCCCcchhhhhhccCcce
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE--------GEGGALVEEWVELANGCI 99 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~--------~~~~~~~~~~~~l~~gci 99 (293)
.+.++++|+|+||||||||+.+|... ..|++|+|+.-||++ ...-..++.+ ...+++++.+- +..
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS-p~TGGsiLGDRiRM~~~~~~~~vFiRs~~---srG- 123 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS-PFTGGSILGDRIRMQRLAVDPGVFIRSSP---SRG- 123 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC-CCCCccccccHhhHHhhccCCCeEEeecC---CCc-
Confidence 46779999999999999999999885 679999999999987 2222222222 01222222111 000
Q ss_pred eeccchhHHHHHHHH--HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC
Q 022736 100 CCTVKHSLVQALEQL--VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177 (293)
Q Consensus 100 cc~~~~~l~~~l~~l--~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~ 177 (293)
..+-+..+..+. +....++|+|||||.|......-.. .-+|.+++|.=+..+.+..
T Consensus 124 ---~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-----------~~aDt~~~v~~pg~GD~~Q-------- 181 (323)
T COG1703 124 ---TLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-----------NMADTFLVVMIPGAGDDLQ-------- 181 (323)
T ss_pred ---cchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-----------hhcceEEEEecCCCCcHHH--------
Confidence 111222222222 1224689999999999887532221 2345556655444332211
Q ss_pred chHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 178 YPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 178 ~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
......++.+|++|+||.|.-.++ .....+...|+... ......-+ ..+++.+||.+|+|+++|++.+.+
T Consensus 182 -~iK~GimEiaDi~vINKaD~~~A~---~a~r~l~~al~~~~---~~~~~~~W---~ppv~~t~A~~g~Gi~~L~~ai~~ 251 (323)
T COG1703 182 -GIKAGIMEIADIIVINKADRKGAE---KAARELRSALDLLR---EVWRENGW---RPPVVTTSALEGEGIDELWDAIED 251 (323)
T ss_pred -HHHhhhhhhhheeeEeccChhhHH---HHHHHHHHHHHhhc---ccccccCC---CCceeEeeeccCCCHHHHHHHHHH
Confidence 112244688999999999965543 34455555565442 01111111 256889999999999999999987
Q ss_pred hc
Q 022736 258 HQ 259 (293)
Q Consensus 258 ~~ 259 (293)
+.
T Consensus 252 h~ 253 (323)
T COG1703 252 HR 253 (323)
T ss_pred HH
Confidence 65
No 23
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.68 E-value=1.4e-16 Score=132.03 Aligned_cols=169 Identities=16% Similarity=0.183 Sum_probs=101.8
Q ss_pred cccccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCccccchhhhhcCCCCcchhhhhhccC
Q 022736 18 THEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELAN 96 (293)
Q Consensus 18 ~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~-vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~ 96 (293)
-++.-+..+....+.+-++|+|.+|+|||||+|+|.. .+ ++.+...+|++..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~----~~~~~~~~~~~~~t~~~~~~------------------- 60 (179)
T TIGR03598 4 VKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTN----RKKLARTSKTPGRTQLINFF------------------- 60 (179)
T ss_pred EeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhC----CCCcccccCCCCcceEEEEE-------------------
Confidence 3566677778888899999999999999999999994 32 34444444432111100
Q ss_pred cceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcH------HHHHhhhcchhhccccccccEEEEEcccchHHHHh
Q 022736 97 GCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA------PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID 170 (293)
Q Consensus 97 gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~------~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~ 170 (293)
..+.++.++||||+.... ...... ...++.....++.+++|+|+........
T Consensus 61 ---------------------~~~~~~~liDtpG~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ii~vvd~~~~~~~~~ 118 (179)
T TIGR03598 61 ---------------------EVNDGFRLVDLPGYGYAKVSKEEKEKWQKL-IEEYLEKRENLKGVVLLMDIRHPLKELD 118 (179)
T ss_pred ---------------------EeCCcEEEEeCCCCccccCChhHHHHHHHH-HHHHHHhChhhcEEEEEecCCCCCCHHH
Confidence 001257899999975431 111111 1223333345678999999976433322
Q ss_pred hhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736 171 KYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT 249 (293)
Q Consensus 171 ~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~ 249 (293)
.. ....+.+...+.++++||+|+.++.+......++++.++... ....++++||++|+|++
T Consensus 119 ~~-----~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~-------------~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 119 LE-----MLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA-------------DDPSVQLFSSLKKTGID 179 (179)
T ss_pred HH-----HHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc-------------CCCceEEEECCCCCCCC
Confidence 11 123344456789999999999865432223344444444321 11368999999999863
No 24
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=9.9e-17 Score=147.90 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=97.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
-|+|+|+||||||||+|+|+ +.++ .+++.+++|.....-.+..
T Consensus 161 dValVG~PNaGKSTLln~Lt----~~k~-~vs~~p~TT~~p~~Giv~~-------------------------------- 203 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVS----AAKP-KVADYPFTTLVPNLGVVRV-------------------------------- 203 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHh----CCcc-cccCCCCCccCcEEEEEEe--------------------------------
Confidence 59999999999999999999 4454 6777777643322211111
Q ss_pred HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHH-----Hh
Q 022736 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ-----IA 186 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q-----i~ 186 (293)
.+...++|+||||+.++......+ ....+.+..+++.+++|+|+..+. ........ +...+.+ ..
T Consensus 204 ----~~~~~i~~vDtPGi~~~a~~~~~L-g~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~---l~~eL~~~~~~L~~ 275 (390)
T PRK12298 204 ----DDERSFVVADIPGLIEGASEGAGL-GIRFLKHLERCRVLLHLIDIAPIDGSDPVENARI---IINELEKYSPKLAE 275 (390)
T ss_pred ----CCCcEEEEEeCCCccccccchhhH-HHHHHHHHHhCCEEEEEeccCcccccChHHHHHH---HHHHHHhhhhhhcC
Confidence 112248999999988754321111 122345667899999999987321 11111000 1111111 24
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.|.++|+||+|+.+..+ +.+..+.+....+. ...++++||+++++++++.+++.+
T Consensus 276 kP~IlVlNKiDl~~~~e----l~~~l~~l~~~~~~------------~~~Vi~ISA~tg~GIdeLl~~I~~ 330 (390)
T PRK12298 276 KPRWLVFNKIDLLDEEE----AEERAKAIVEALGW------------EGPVYLISAASGLGVKELCWDLMT 330 (390)
T ss_pred CCEEEEEeCCccCChHH----HHHHHHHHHHHhCC------------CCCEEEEECCCCcCHHHHHHHHHH
Confidence 68899999999976432 22222222221110 024789999999999998887754
No 25
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.67 E-value=3e-16 Score=135.52 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=117.3
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..++--++++|.||+|||||.|.++ |+|++.++....+ ++..+ -.+||
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mi----g~kv~~vS~K~~T----Tr~~i-----------------lgi~t------- 116 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMI----GQKVSAVSRKVHT----TRHRI-----------------LGIIT------- 116 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhh----CCccccccccccc----eeeee-----------------eEEEe-------
Confidence 3567779999999999999999999 9999999988876 22111 11333
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHH----hhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLAS----VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~----~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
.+..+++|.||||+..+..... .-+.+....+...+|.|+.|+|+.+-..++... .......+.
T Consensus 117 ---------s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~ys- 184 (379)
T KOG1423|consen 117 ---------SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEYS- 184 (379)
T ss_pred ---------cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHHh-
Confidence 4567899999999776554432 112345556677899999999998522211100 000112222
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHH------------h---hcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIH------------E---INSLAHVIRSVRCQVDLSEVLNCRAYDATHVT 249 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~------------~---lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~ 249 (293)
..+.++|+||+|...... .+-.+.+.|. + ..|...++...-+.-.+.++|.+||++|+|++
T Consensus 185 -~ips~lvmnkid~~k~k~---~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~Gik 260 (379)
T KOG1423|consen 185 -KIPSILVMNKIDKLKQKR---LLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIK 260 (379)
T ss_pred -cCCceeeccchhcchhhh---HHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHH
Confidence 358999999999887653 2222222221 1 11222333333344457889999999999999
Q ss_pred hhhhhhhh
Q 022736 250 RLEGLLEE 257 (293)
Q Consensus 250 ~l~~~l~~ 257 (293)
++.+||-.
T Consensus 261 dlkqyLms 268 (379)
T KOG1423|consen 261 DLKQYLMS 268 (379)
T ss_pred HHHHHHHh
Confidence 99999854
No 26
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.4e-16 Score=145.51 Aligned_cols=155 Identities=23% Similarity=0.294 Sum_probs=113.3
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
++|+|.||+|||||+|+|+ ++..|||+.-+|+ +++.++. .+.
T Consensus 220 vvIiG~PNvGKSSLLNaL~----~~d~AIVTdI~GT----TRDviee---------~i~--------------------- 261 (454)
T COG0486 220 VVIIGRPNVGKSSLLNALL----GRDRAIVTDIAGT----TRDVIEE---------DIN--------------------- 261 (454)
T ss_pred EEEECCCCCcHHHHHHHHh----cCCceEecCCCCC----ccceEEE---------EEE---------------------
Confidence 4568999999999999999 7888999999998 5555543 111
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 194 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN 194 (293)
-++..+.++||+|+-+.....+.+...+..+...++|.|++|+|++......+.. ..+ ...-..+.++|+|
T Consensus 262 ---i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-----~~~-~~~~~~~~i~v~N 332 (454)
T COG0486 262 ---LNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-----LIE-LLPKKKPIIVVLN 332 (454)
T ss_pred ---ECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-----HHH-hcccCCCEEEEEe
Confidence 2456788999999999988888888888888889999999999998743222210 111 1122356799999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+|+.++... ..+ ++. +-..++.+|+++++|++.|.+.+.+.
T Consensus 333 K~DL~~~~~~----~~~-----~~~-------------~~~~~i~iSa~t~~Gl~~L~~~i~~~ 374 (454)
T COG0486 333 KADLVSKIEL----ESE-----KLA-------------NGDAIISISAKTGEGLDALREAIKQL 374 (454)
T ss_pred chhccccccc----chh-----hcc-------------CCCceEEEEecCccCHHHHHHHHHHH
Confidence 9999986521 111 000 11246889999999999999888654
No 27
>PRK13768 GTPase; Provisional
Probab=99.64 E-value=7.3e-16 Score=134.68 Aligned_cols=218 Identities=16% Similarity=0.141 Sum_probs=115.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhh-----hhccCcceeecc-c
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW-----VELANGCICCTV-K 104 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~-----~~l~~gcicc~~-~ 104 (293)
-+++++|++|+||||++..+... ..|+++.++..|++.+ .++...-.+..+-+..+++ ...+++++.|.. .
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~-~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~ 81 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE-YLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLL 81 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc-cCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHH
Confidence 47889999999999999988764 5689999999999852 2111000000000111111 112333444421 0
Q ss_pred hhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736 105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (293)
Q Consensus 105 ~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (293)
..-...+...+. ..+.+++++||||..++.... ..+. + .+.... .+.+++|+|+....+..+...........
T Consensus 82 ~~~~~~l~~~l~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~-~-~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~ 157 (253)
T PRK13768 82 LTKADEIKEEIE-SLDADYVLVDTPGQMELFAFRESGRKLV-E-RLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSV 157 (253)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCCcHHHHHhhhHHHHHHH-H-HHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHH
Confidence 111112222222 234699999999987754321 1111 1 111111 67899999997654443321100000011
Q ss_pred HHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHh-------hcCCC----E----EEEeecCCCCchhhcccccCCcc
Q 022736 182 IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHE-------INSLA----H----VIRSVRCQVDLSEVLNCRAYDAT 246 (293)
Q Consensus 182 ~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~-------lnp~a----~----i~~~~~~~~~~~~i~~~sa~~~~ 246 (293)
..+...+.++|+||+|+++..+. +.+.+.++. +.... . +.+..........++++|+.+++
T Consensus 158 ~~~~~~~~i~v~nK~D~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~ 233 (253)
T PRK13768 158 QLRLGLPQIPVLNKADLLSEEEL----ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE 233 (253)
T ss_pred HHHcCCCEEEEEEhHhhcCchhH----HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc
Confidence 12456789999999999876532 333332221 00000 0 00000000012367899999999
Q ss_pred hhhhhhhhhhhhc
Q 022736 247 HVTRLEGLLEEHQ 259 (293)
Q Consensus 247 ~~~~l~~~l~~~~ 259 (293)
|++++.+++.+..
T Consensus 234 gl~~L~~~I~~~l 246 (253)
T PRK13768 234 GFDELYAAIQEVF 246 (253)
T ss_pred CHHHHHHHHHHHc
Confidence 9999999998754
No 28
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.63 E-value=1.4e-15 Score=122.31 Aligned_cols=155 Identities=22% Similarity=0.216 Sum_probs=95.6
Q ss_pred EEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHHH
Q 022736 36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV 115 (293)
Q Consensus 36 ~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l~ 115 (293)
+++|.+|+|||||+|+|+ +.+...+.+.++.+....... +
T Consensus 1 ~l~G~~~~GKssl~~~l~----~~~~~~~~~~~~~t~~~~~~~----------------------~-------------- 40 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLT----GRRDAIVEDTPGVTRDRIYGE----------------------A-------------- 40 (157)
T ss_pred CccCCCCCCHHHHHHHHh----CCcEEeecCCCCceeCceeEE----------------------E--------------
Confidence 478999999999999999 555566666555411100000 0
Q ss_pred hhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeC
Q 022736 116 QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195 (293)
Q Consensus 116 ~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK 195 (293)
...+.++.++||||+.+........+..........+|.+++|+|+......... .+..++.+...+.++|+||
T Consensus 41 -~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-----~~~~~~~~~~~piiiv~nK 114 (157)
T cd01894 41 -EWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-----EIAKYLRKSKKPVILVVNK 114 (157)
T ss_pred -EECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-----HHHHHHHhcCCCEEEEEEC
Confidence 0123568899999987754411111112223344678999999999753222111 1233445556789999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+.+... ....+..+ ....++.+|++++.|++++.+++.+
T Consensus 115 ~D~~~~~~-------~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 115 VDNIKEED-------EAAEFYSL--------------GFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred cccCChHH-------HHHHHHhc--------------CCCCeEEEecccCCCHHHHHHHHHh
Confidence 99986531 12222222 1235688999999999999888754
No 29
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.63 E-value=2.6e-16 Score=133.99 Aligned_cols=223 Identities=14% Similarity=0.176 Sum_probs=120.0
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhh---c-cCcceeec
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE---L-ANGCICCT 102 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~---l-~~gcicc~ 102 (293)
..+.++++++|..|||||||+++|..+ ..+...=+|+.||.. .++....--+-++-+..+++.. | +||.|..+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv-~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAV-RNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHH-hcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 446778889999999999999999875 334446677777764 2222111001111122222221 1 57777655
Q ss_pred cch---hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH--HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC
Q 022736 103 VKH---SLVQALEQLVQRKERLDHILLETTGLANPAPLA--SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177 (293)
Q Consensus 103 ~~~---~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~--~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~ 177 (293)
+.- .+...+.-+-++...+++++|||||..+-.... ..+. -..++..+. -+|+++||..+...+...++....
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsII-te~lass~p-tvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSII-TETLASSFP-TVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccch-HhhHhhcCC-eEEEEEecCCcCCCchhHHHHHHH
Confidence 432 222222222233456899999999965432111 1111 122333333 368999998754333222222122
Q ss_pred chHHHHHHhccCEEEEeCCCCCCCCCC---cchHHHHHHHHHhhcCCCEEEEeecCCC--------CchhhcccccCCcc
Q 022736 178 YPEAIHQIAFADVVILNKVDLVSPERS---GDSLDELEKEIHEINSLAHVIRSVRCQV--------DLSEVLNCRAYDAT 246 (293)
Q Consensus 178 ~~~~~~qi~~a~iivlNK~D~~~~~~~---~~~~~~~~~~l~~lnp~a~i~~~~~~~~--------~~~~i~~~sa~~~~ 246 (293)
+..++...+.|.++++||+|+.+.+-. ..+.+.++..+... ....+....+.+ ..-..+.+|+++|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~--~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEA--ESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhh--ccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 344566778899999999999886521 12334444444431 111111100000 11234578999999
Q ss_pred hhhhhhhhhh
Q 022736 247 HVTRLEGLLE 256 (293)
Q Consensus 247 ~~~~l~~~l~ 256 (293)
|++++...+.
T Consensus 251 G~ddf~~av~ 260 (366)
T KOG1532|consen 251 GFDDFFTAVD 260 (366)
T ss_pred cHHHHHHHHH
Confidence 9988776553
No 30
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=1.5e-15 Score=137.43 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=96.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
++=|+|+|+||||||||+|+|.. .++. +.+.+++|.....-.+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~----a~~~-va~ypfTT~~p~~G~v~~------------------------------ 202 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSA----AKPK-IADYPFTTLHPNLGVVRV------------------------------ 202 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHc----CCCc-cCCCCCceeCceEEEEEe------------------------------
Confidence 34589999999999999999994 3333 455565533222111110
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHHH-----
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIHQ----- 184 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~q----- 184 (293)
.+..+++++|+||+.+.......+ ...++.+..+++++++|+|++... ..+.. +...+.+
T Consensus 203 ------~~~~~~~i~D~PGli~ga~~~~gL-g~~flrhie~a~vlI~ViD~s~~~s~e~~~~------~~~EL~~~~~~L 269 (335)
T PRK12299 203 ------DDYKSFVIADIPGLIEGASEGAGL-GHRFLKHIERTRLLLHLVDIEAVDPVEDYKT------IRNELEKYSPEL 269 (335)
T ss_pred ------CCCcEEEEEeCCCccCCCCccccH-HHHHHHHhhhcCEEEEEEcCCCCCCHHHHHH------HHHHHHHhhhhc
Confidence 123458999999987543321111 123345556788999999997532 11111 1111111
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
...+.++|+||+|+.+..+. ....+....+..+ ..++++||++++|++++..++.+.
T Consensus 270 ~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~---------------~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 270 ADKPRILVLNKIDLLDEEEE--REKRAALELAALG---------------GPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred ccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC---------------CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 24689999999999765421 1111111111110 357899999999999999988654
No 31
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.62 E-value=1.7e-15 Score=119.36 Aligned_cols=103 Identities=18% Similarity=0.283 Sum_probs=72.4
Q ss_pred EEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCC
Q 022736 125 LLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPER 203 (293)
Q Consensus 125 iidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~ 203 (293)
+||||| +.+...+...+ +....++|.|++|.|++....... +........+.+-|+||+|+.+.+
T Consensus 40 ~IDTPGEyiE~~~~y~aL-----i~ta~dad~V~ll~dat~~~~~~p--------P~fa~~f~~pvIGVITK~Dl~~~~- 105 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHAL-----IVTAQDADVVLLLQDATEPRSVFP--------PGFASMFNKPVIGVITKIDLPSDD- 105 (143)
T ss_pred EEECChhheeCHHHHHHH-----HHHHhhCCEEEEEecCCCCCccCC--------chhhcccCCCEEEEEECccCccch-
Confidence 699999 44443344333 345578999999999985432111 223334467899999999999433
Q ss_pred CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 204 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 204 ~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..+++.++.|+.. ...++|.+|+.+|+|+++|.++|++
T Consensus 106 --~~i~~a~~~L~~a--------------G~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 106 --ANIERAKKWLKNA--------------GVKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred --hhHHHHHHHHHHc--------------CCCCeEEEECCCCcCHHHHHHHHhC
Confidence 2567777777754 2357899999999999999999863
No 32
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.62 E-value=3.7e-15 Score=121.58 Aligned_cols=167 Identities=23% Similarity=0.283 Sum_probs=99.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
..++++|.+|+|||||+|+|+. .........++.+ ...... .
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~----~~~~~~~~~~~~~----~~~~~~---------~--------------------- 44 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLG----EERVIVSDIAGTT----RDSIDV---------P--------------------- 44 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhC----ccceeccCCCCCc----cCceee---------E---------------------
Confidence 4588999999999999999994 3333333333321 110000 0
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHH---hhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLAS---VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~---~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
. ...+.++.+|||||+.+...... .+.....+......|.+++|+|+.......... ......+...+.
T Consensus 45 --~-~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~~~ 116 (174)
T cd01895 45 --F-EYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-----IAGLILEEGKAL 116 (174)
T ss_pred --E-EECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-----HHHHHHhcCCCE
Confidence 0 01335688999999876532211 111111223345788999999997654332210 122233346788
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
++++||+|+.+..+ ....++.+.+++..+.. ....++.+|+++++|++++..++..
T Consensus 117 iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 117 VIVVNKWDLVEKDS--KTMKEFKKEIRRKLPFL----------DYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred EEEEeccccCCccH--HHHHHHHHHHHhhcccc----------cCCceEEEeccCCCCHHHHHHHHHH
Confidence 99999999987531 13455556665543321 1246889999999999998877653
No 33
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.61 E-value=6.1e-16 Score=133.67 Aligned_cols=209 Identities=19% Similarity=0.201 Sum_probs=98.0
Q ss_pred EEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhc-----cCcceeec--cc---
Q 022736 37 ITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL-----ANGCICCT--VK--- 104 (293)
Q Consensus 37 i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l-----~~gcicc~--~~--- 104 (293)
|+|++||||||+++++.+. ..++++.+|+-||+.+ ......--+-++-+..+++.+- +++-+.|- +.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~-~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~ 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE-NLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S---SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc-ccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH
Confidence 6899999999999999874 5689999999999983 2221111111112222222222 33333441 12
Q ss_pred hhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhh-cchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736 105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLW-LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (293)
Q Consensus 105 ~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~-~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (293)
+++.+.+... ..+|+|+||||+.+......... .-..+....++ ++++++|+....+..............+-
T Consensus 80 d~l~~~i~~~-----~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~-~~v~LvD~~~~~~~~~f~s~~L~s~s~~~ 153 (238)
T PF03029_consen 80 DWLDEEIEKY-----EDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRL-VVVFLVDSSFCSDPSKFVSSLLLSLSIML 153 (238)
T ss_dssp HHHHHHHHHH-----H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhc-----CCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcce-EEEEEEecccccChhhHHHHHHHHHHHHh
Confidence 2334444332 23899999999876433332111 01122322333 68999999877654443322211223345
Q ss_pred HHhccCEEEEeCCCCCCCCCCcchHHH------HHHHH----HhhcCC-CEEEEeecCCCCch-hhcccccCCcchhhhh
Q 022736 184 QIAFADVVILNKVDLVSPERSGDSLDE------LEKEI----HEINSL-AHVIRSVRCQVDLS-EVLNCRAYDATHVTRL 251 (293)
Q Consensus 184 qi~~a~iivlNK~D~~~~~~~~~~~~~------~~~~l----~~lnp~-a~i~~~~~~~~~~~-~i~~~sa~~~~~~~~l 251 (293)
+++.|.+.|+||+|+++.. ..+.++. +...+ +.++.. +.++ ...... .++++|+.+++++++|
T Consensus 154 ~~~lP~vnvlsK~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l----~~~~~~~~f~pls~~~~~~~~~L 228 (238)
T PF03029_consen 154 RLELPHVNVLSKIDLLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELL----DDFGLVIRFIPLSSKDGEGMEEL 228 (238)
T ss_dssp HHTSEEEEEE--GGGS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHC----CCCSSS---EE-BTTTTTTHHHH
T ss_pred hCCCCEEEeeeccCcccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH----hhcCCCceEEEEECCChHHHHHH
Confidence 6789999999999999732 1011111 11111 111100 0000 112223 6789999999999999
Q ss_pred hhhhhh
Q 022736 252 EGLLEE 257 (293)
Q Consensus 252 ~~~l~~ 257 (293)
...+.+
T Consensus 229 ~~~id~ 234 (238)
T PF03029_consen 229 LAAIDK 234 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 34
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.60 E-value=6.5e-15 Score=122.20 Aligned_cols=184 Identities=18% Similarity=0.133 Sum_probs=99.0
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
++++|.+|||||||+|+|+............++.. .+...... .....+..++.++..
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~----------- 59 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETF----LDVLKEER-------ERGITIKSGVATFEW----------- 59 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceeccc----ccCCHHHH-------HcCCCeecceEEEee-----------
Confidence 68899999999999999996532111111111100 00000000 001112222332221
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 194 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN 194 (293)
.+.+++|+||||..+...... .....+|.+++|+|+......... .......+...+.++++|
T Consensus 60 ----~~~~~~liDtpG~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~~i~iv~n 122 (189)
T cd00881 60 ----PDRRVNFIDTPGHEDFSSEVI--------RGLSVSDGAILVVDANEGVQPQTR-----EHLRIAREGGLPIIVAIN 122 (189)
T ss_pred ----CCEEEEEEeCCCcHHHHHHHH--------HHHHhcCEEEEEEECCCCCcHHHH-----HHHHHHHHCCCCeEEEEE
Confidence 246789999999765433322 122468899999999764322211 012233445678999999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+|+.++.+.......+.+.++.+.....-.. ........+++++|+++|.|++++..++...
T Consensus 123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 123 KIDRVGEEDLEEVLREIKELLGLIGFISTKEE-GTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred CCCCcchhcHHHHHHHHHHHHccccccchhhh-hcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 99998754322233344444443221000000 0001123568899999999999999888643
No 35
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.60 E-value=6.7e-15 Score=134.23 Aligned_cols=158 Identities=21% Similarity=0.339 Sum_probs=99.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
...|.++++|.+|+|||||+|+|+ +.+ +++.+.+++|.......+ .+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~----~~~-~~v~~~~~tT~d~~~~~i-------------~~--------------- 233 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALT----GAD-VYAADQLFATLDPTTRRL-------------DL--------------- 233 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh----CCc-eeeccCCccccCCEEEEE-------------Ee---------------
Confidence 456889999999999999999999 444 455566665332221111 11
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--
Q 022736 110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-- 185 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-- 185 (293)
.++..+.|+||+|+.. |....+.+ ...+.....+|.+++|+|++........ . .+...+.++
T Consensus 234 --------~~~~~i~l~DT~G~~~~l~~~lie~f--~~tle~~~~ADlil~VvD~s~~~~~~~~-~---~~~~~L~~l~~ 299 (351)
T TIGR03156 234 --------PDGGEVLLTDTVGFIRDLPHELVAAF--RATLEEVREADLLLHVVDASDPDREEQI-E---AVEKVLEELGA 299 (351)
T ss_pred --------CCCceEEEEecCcccccCCHHHHHHH--HHHHHHHHhCCEEEEEEECCCCchHHHH-H---HHHHHHHHhcc
Confidence 1234688999999843 55554443 2344556789999999999764322110 0 012333444
Q ss_pred -hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 -~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..+.++|+||+|+.+.. .+.. +.. . ...++.+||++|.|+++|..++.+
T Consensus 300 ~~~piIlV~NK~Dl~~~~-------~v~~-~~~--~-------------~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 300 EDIPQLLVYNKIDLLDEP-------RIER-LEE--G-------------YPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred CCCCEEEEEEeecCCChH-------hHHH-HHh--C-------------CCCEEEEEccCCCCHHHHHHHHHh
Confidence 35779999999997532 1111 110 0 123678999999999999888753
No 36
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=2.2e-15 Score=141.61 Aligned_cols=165 Identities=22% Similarity=0.214 Sum_probs=96.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
+.-|+|+|+||||||||+|+|.. .+.. +.+.+++|.......+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~----akpk-IadypfTTl~P~lGvv~------------------------------- 202 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSA----AKPK-IADYPFTTLVPNLGVVQ------------------------------- 202 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhc----CCcc-ccccCcccccceEEEEE-------------------------------
Confidence 44589999999999999999994 3333 35666653222111110
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH------HHHhhh-cccCCchHH---
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL------FQIDKY-RHLSSYPEA--- 181 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~------~~~~~~-~~~~~~~~~--- 181 (293)
..+..+.|+||||+.+.......+. ...+.+..+++.+++|||++... ..+... ..+..+...
T Consensus 203 ------~~~~~f~laDtPGliegas~g~gLg-~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~ 275 (500)
T PRK12296 203 ------AGDTRFTVADVPGLIPGASEGKGLG-LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDG 275 (500)
T ss_pred ------ECCeEEEEEECCCCccccchhhHHH-HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccc
Confidence 1234689999999865433222111 22345567789999999997531 111110 000001000
Q ss_pred ----HHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 182 ----IHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 182 ----~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
......|.+||+||+|+.+..+ ..+.+...+... . ..++++|+++++|+++|..++.+
T Consensus 276 ~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~~~l~~~--------------g-~~Vf~ISA~tgeGLdEL~~~L~e 337 (500)
T PRK12296 276 DLGLGDLAERPRLVVLNKIDVPDARE---LAEFVRPELEAR--------------G-WPVFEVSAASREGLRELSFALAE 337 (500)
T ss_pred cchhhhhcCCCEEEEEECccchhhHH---HHHHHHHHHHHc--------------C-CeEEEEECCCCCCHHHHHHHHHH
Confidence 0112578999999999975431 122223233221 0 24789999999999999888754
No 37
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=4.7e-15 Score=140.78 Aligned_cols=160 Identities=23% Similarity=0.220 Sum_probs=99.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
.+|.|+|+|.+|+|||||+|+|+ +.+.+++...+|. ++..+... .
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~----~~~~~~v~~~~gv----T~d~~~~~---------~------------------ 81 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRIL----GRREAVVEDVPGV----TRDRVSYD---------A------------------ 81 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHh----CcCcccccCCCCC----CEeeEEEE---------E------------------
Confidence 45889999999999999999999 5556677777764 22221110 0
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 111 LEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
...+..+.++||||+... ..+...+ ..........+|++++|+|+.......+.. +...+.....|.
T Consensus 82 ------~~~~~~~~l~DT~G~~~~~~~~~~~~-~~~~~~~~~~aD~il~VvD~~~~~s~~~~~-----i~~~l~~~~~pi 149 (472)
T PRK03003 82 ------EWNGRRFTVVDTGGWEPDAKGLQASV-AEQAEVAMRTADAVLFVVDATVGATATDEA-----VARVLRRSGKPV 149 (472)
T ss_pred ------EECCcEEEEEeCCCcCCcchhHHHHH-HHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCE
Confidence 013345889999997632 2222111 112223345789999999998654332211 233444556789
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
++|+||+|+..... .... ... ..+...+++||++|.|++++.+++.+.
T Consensus 150 ilV~NK~Dl~~~~~------~~~~-~~~--------------~g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 150 ILAANKVDDERGEA------DAAA-LWS--------------LGLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred EEEEECccCCccch------hhHH-HHh--------------cCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 99999999864321 1111 111 122345789999999999998887643
No 38
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.58 E-value=7e-15 Score=138.20 Aligned_cols=157 Identities=21% Similarity=0.185 Sum_probs=101.8
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
|+++|.+|+|||||+|+|+ +.+.+++...+|.+ ++.... ..
T Consensus 2 i~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~t----~d~~~~---------~~---------------------- 42 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLT----GKRDAIVSDTPGVT----RDRKYG---------DA---------------------- 42 (429)
T ss_pred EEEECCCCCCHHHHHHHHh----CCCcceecCCCCcc----cCceEE---------EE----------------------
Confidence 7899999999999999999 56667777777752 211111 00
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 194 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN 194 (293)
...+..+.++||||+..........+..........+|.+++|+|+.......+.. +..++++...+.++|+|
T Consensus 43 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~-----i~~~l~~~~~piilVvN 115 (429)
T TIGR03594 43 --EWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEE-----IAKWLRKSGKPVILVAN 115 (429)
T ss_pred --EECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-----HHHHHHHhCCCEEEEEE
Confidence 01334588999999754322222222222334446789999999998654333321 34455666788999999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+|+.+.+. .... ... +.+.+++.+||.+|.|++++.+++...
T Consensus 116 K~D~~~~~~---~~~~----~~~--------------lg~~~~~~vSa~~g~gv~~ll~~i~~~ 158 (429)
T TIGR03594 116 KIDGKKEDA---VAAE----FYS--------------LGFGEPIPISAEHGRGIGDLLDAILEL 158 (429)
T ss_pred CccCCcccc---cHHH----HHh--------------cCCCCeEEEeCCcCCChHHHHHHHHHh
Confidence 999876542 1111 111 234568899999999999998887644
No 39
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.58 E-value=1.4e-14 Score=118.49 Aligned_cols=157 Identities=20% Similarity=0.218 Sum_probs=88.9
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
|+++|.+|||||||+|+|.. .+. .+...++++.......+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~----~~~-~v~~~~~~t~~~~~~~~~---------------------------------- 43 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN----AKP-KIADYPFTTLVPNLGVVR---------------------------------- 43 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc----CCc-cccCCCccccCCcceEEE----------------------------------
Confidence 68999999999999999984 322 233333331110000000
Q ss_pred HhhcCC-CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch---HHHHhhhcccCCchHHHHH-----H
Q 022736 115 VQRKER-LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL---LFQIDKYRHLSSYPEAIHQ-----I 185 (293)
Q Consensus 115 ~~~~~~-~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~---~~~~~~~~~~~~~~~~~~q-----i 185 (293)
..+ ..+.|+||||+.+.......+ ...++.....+|.+++|+|+... ...... +.+.+.+ .
T Consensus 44 ---~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~------~~~~l~~~~~~~~ 113 (170)
T cd01898 44 ---VDDGRSFVVADIPGLIEGASEGKGL-GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKT------IRNELELYNPELL 113 (170)
T ss_pred ---cCCCCeEEEEecCcccCcccccCCc-hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHH------HHHHHHHhCcccc
Confidence 122 268899999975322111111 11222333468899999999864 111111 1111211 2
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..+.++|+||+|+.+... ....+....+.. ....++.+|++++.|++++.+++.+
T Consensus 114 ~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 114 EKPRIVVLNKIDLLDEEE---LFELLKELLKEL--------------WGKPVFPISALTGEGLDELLRKLAE 168 (170)
T ss_pred ccccEEEEEchhcCCchh---hHHHHHHHHhhC--------------CCCCEEEEecCCCCCHHHHHHHHHh
Confidence 467899999999976542 122222222221 0134688999999999999888754
No 40
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.58 E-value=1.6e-14 Score=117.77 Aligned_cols=164 Identities=16% Similarity=0.127 Sum_probs=94.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
|+++|+|.+|+|||||+|+|.... +... ...+.+..+....+.. .
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~----~~~~-~~~~~t~~~~~~~~~~-------------~----------------- 45 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN----VAAG-EAGGITQHIGAFEVPA-------------E----------------- 45 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc----cccc-cCCCeEEeeccEEEec-------------c-----------------
Confidence 789999999999999999998532 1110 1111101100000000 0
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv 192 (293)
...+.++.++||||......... .....+|.+++|+|+......... .....+.+...+.++|
T Consensus 46 ----~~~~~~~~iiDtpG~~~~~~~~~--------~~~~~~d~il~v~d~~~~~~~~~~-----~~~~~~~~~~~p~ivv 108 (168)
T cd01887 46 ----VLKIPGITFIDTPGHEAFTNMRA--------RGASLTDIAILVVAADDGVMPQTI-----EAIKLAKAANVPFIVA 108 (168)
T ss_pred ----cCCcceEEEEeCCCcHHHHHHHH--------HHHhhcCEEEEEEECCCCccHHHH-----HHHHHHHHcCCCEEEE
Confidence 01246789999999754332221 122467889999999764221110 0122344566789999
Q ss_pred EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+||+|+.+.. ...+...++.+.... ... .+ ....++++|+.+|+|++++.+++.++
T Consensus 109 ~NK~Dl~~~~-----~~~~~~~~~~~~~~~--~~~-~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 109 LNKIDKPNAN-----PERVKNELSELGLQG--EDE-WG--GDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred EEceeccccc-----HHHHHHHHHHhhccc--ccc-cc--CcCcEEEeecccCCCHHHHHHHHHHh
Confidence 9999987532 234444443332110 000 00 12367899999999999999998654
No 41
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.58 E-value=1.4e-14 Score=136.24 Aligned_cols=167 Identities=24% Similarity=0.300 Sum_probs=105.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..-++++|.+|+|||||+|+|+ +....++...+|++.. .+.. ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~----~~~~~~~~~~~gtt~~----~~~~---------~~~----------------- 216 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALL----GEERVIVSDIAGTTRD----SIDI---------PFE----------------- 216 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHH----CCCeeecCCCCCceEC----cEeE---------EEE-----------------
Confidence 34568889999999999999999 5545556666665221 1100 000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
.++..+.++||||+....... +.+.....+.....+|++++|+|+.......+.. ......+...
T Consensus 217 -------~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-----~~~~~~~~~~ 284 (429)
T TIGR03594 217 -------RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-----IAGLILEAGK 284 (429)
T ss_pred -------ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCC
Confidence 123368899999986644332 2222222334456789999999998654433321 2223334467
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+.++|+||+|+++.. .....+.+.++...+. +...+++.+||++|.|++++.+++.
T Consensus 285 ~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~----------~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 285 ALVIVVNKWDLVKDE---KTREEFKKELRRKLPF----------LDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred cEEEEEECcccCCCH---HHHHHHHHHHHHhccc----------CCCCceEEEeCCCCCCHHHHHHHHH
Confidence 899999999998322 2455666666544332 1235678999999999988876654
No 42
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.58 E-value=8.1e-15 Score=117.76 Aligned_cols=151 Identities=23% Similarity=0.271 Sum_probs=94.8
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
.++++|.+|||||||+|+++ +.+.+.+.+.++.+.......+
T Consensus 3 ~i~l~G~~~~GKstli~~l~----~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 44 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALA----GRDRAIVSDIAGTTRDVIEESI---------------------------------- 44 (157)
T ss_pred EEEEECCCCCCHHHHHHHHH----CCceEeccCCCCCccceEEEEE----------------------------------
Confidence 47899999999999999999 5555566666654211100000
Q ss_pred HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-HHhccCEEE
Q 022736 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVVI 192 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-qi~~a~iiv 192 (293)
...+.++.++||||+.+..................+++.+++|+|+......... .... ....+.++|
T Consensus 45 ---~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~--------~~~~~~~~~~vi~v 113 (157)
T cd04164 45 ---DIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDL--------EILELPADKPIIVV 113 (157)
T ss_pred ---EeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHH--------HHHHhhcCCCEEEE
Confidence 0123467899999976643322111112223344578999999999864332221 1222 345789999
Q ss_pred EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+||+|+.+... . . ......+++.+|+.++.|++++..++..
T Consensus 114 ~nK~D~~~~~~----~------~--------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 154 (157)
T cd04164 114 LNKSDLLPDSE----L------L--------------SLLAGKPIIAISAKTGEGLDELKEALLE 154 (157)
T ss_pred EEchhcCCccc----c------c--------------cccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 99999987542 0 0 0011246788999999999999988865
No 43
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=9.8e-15 Score=135.55 Aligned_cols=158 Identities=21% Similarity=0.262 Sum_probs=93.4
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
-|+|+|+||||||||+|+|.+ .+.. +.+.+++|.......+..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~----ak~k-Ia~ypfTTl~PnlG~v~~-------------------------------- 202 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSN----AKPK-IANYHFTTLVPNLGVVET-------------------------------- 202 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHc----CCCc-cccCCcceeceEEEEEEE--------------------------------
Confidence 799999999999999999994 3333 345555433221111100
Q ss_pred HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHH-----HHh
Q 022736 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIH-----QIA 186 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~-----qi~ 186 (293)
.++..++|+|+||+.+.......+ ...++.+..+++++++|+|++... ........ +...+. ...
T Consensus 203 ----~~~~~~~laD~PGliega~~~~gL-g~~fLrhier~~llI~VID~s~~~~~dp~e~~~~---i~~EL~~y~~~L~~ 274 (424)
T PRK12297 203 ----DDGRSFVMADIPGLIEGASEGVGL-GHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEK---INKELKLYNPRLLE 274 (424)
T ss_pred ----eCCceEEEEECCCCcccccccchH-HHHHHHHHhhCCEEEEEEeCCccccCChHHHHHH---HHHHHhhhchhccC
Confidence 123568999999986533221111 123355667889999999996431 11111100 111111 135
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.+||+||+|+.... +.+....+.+. ..++++||++++|+++|..++.+
T Consensus 275 kP~IVV~NK~DL~~~~------e~l~~l~~~l~---------------~~i~~iSA~tgeGI~eL~~~L~~ 324 (424)
T PRK12297 275 RPQIVVANKMDLPEAE------ENLEEFKEKLG---------------PKVFPISALTGQGLDELLYAVAE 324 (424)
T ss_pred CcEEEEEeCCCCcCCH------HHHHHHHHHhC---------------CcEEEEeCCCCCCHHHHHHHHHH
Confidence 6889999999974321 22222222221 24688999999999999888754
No 44
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=1e-14 Score=137.37 Aligned_cols=165 Identities=21% Similarity=0.284 Sum_probs=104.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
...-++++|.+|+|||||+|+|+ +....++...+|++. ..+.. ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll----~~~~~~~~~~~gtt~----~~~~~---------~~------------------ 216 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALL----GEERVIVSDIAGTTR----DSIDT---------PF------------------ 216 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCceE----EEEEE---------EE------------------
Confidence 34568899999999999999999 555566666776522 11100 00
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
...+.++.++||||+.....+. +.+.....+.....+|++++|+|+.......+.. ......+...
T Consensus 217 ------~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-----i~~~~~~~~~ 285 (435)
T PRK00093 217 ------ERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-----IAGLALEAGR 285 (435)
T ss_pred ------EECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCC
Confidence 0134568999999986654432 1111122334556789999999998654433221 2223334457
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+.++++||+|+.+.+ ....+.+.++...+. +...+++.+||++|.|++++.+++
T Consensus 286 ~~ivv~NK~Dl~~~~----~~~~~~~~~~~~l~~----------~~~~~i~~~SA~~~~gv~~l~~~i 339 (435)
T PRK00093 286 ALVIVVNKWDLVDEK----TMEEFKKELRRRLPF----------LDYAPIVFISALTGQGVDKLLEAI 339 (435)
T ss_pred cEEEEEECccCCCHH----HHHHHHHHHHHhccc----------ccCCCEEEEeCCCCCCHHHHHHHH
Confidence 899999999998543 245555555543321 123568899999999998777654
No 45
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.57 E-value=2.4e-14 Score=128.27 Aligned_cols=194 Identities=20% Similarity=0.181 Sum_probs=106.9
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccch--
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH-- 105 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~-- 105 (293)
.+..+++|+|++|||||||++.|... ..|.+++++..|+.. ....+.++.+.. . ..+ .....|+.++.+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~-~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~ 106 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS-PFTGGSILGDRT-R--MQR-LATDPGAFIRSMPTRG 106 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-Ccchhhhcccch-h--hhh-cccCCCceeeecCccc
Confidence 35789999999999999999999874 458899999999875 211122221100 0 000 00112222222111
Q ss_pred -------hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCc
Q 022736 106 -------SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSY 178 (293)
Q Consensus 106 -------~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~ 178 (293)
...+.+.. +. ..++|++||||+|......- ....+|.++++.++..... +.. +
T Consensus 107 ~~~~~~~~~~~~~~~-l~-~~g~D~viidT~G~~~~e~~-----------i~~~aD~i~vv~~~~~~~e-l~~------~ 166 (300)
T TIGR00750 107 HLGGLSQATRELILL-LD-AAGYDVIIVETVGVGQSEVD-----------IANMADTFVVVTIPGTGDD-LQG------I 166 (300)
T ss_pred cccchhHHHHHHHHH-HH-hCCCCEEEEeCCCCchhhhH-----------HHHhhceEEEEecCCccHH-HHH------H
Confidence 12222222 22 36899999999997744311 1133566676665543222 111 1
Q ss_pred hHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 179 PEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 179 ~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
. ....+.++++++||+|+............+...+..+.... .+ .. ..++.+|+++++|++++.+++.+.
T Consensus 167 ~--~~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~------~~-~~-~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 167 K--AGLMEIADIYVVNKADGEGATNVTIARLMLALALEEIRRRE------DG-WR-PPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred H--HHHhhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccc------cC-CC-CCEEEEEccCCCCHHHHHHHHHHH
Confidence 1 12246789999999999865311000001111122221110 00 01 247899999999999999988654
No 46
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.57 E-value=1.2e-14 Score=136.87 Aligned_cols=157 Identities=24% Similarity=0.228 Sum_probs=99.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
|.|+++|.+|+|||||+|+|+ +.+.+++...+|. +++.... ...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~----~~~~~~v~~~~~~----t~d~~~~---------~~~------------------- 45 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLT----GKRDAIVADTPGV----TRDRIYG---------EAE------------------- 45 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHh----CCCceeeCCCCCC----cccceEE---------EEE-------------------
Confidence 678999999999999999999 6666777776664 2211111 000
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHH-HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736 113 QLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~-~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii 191 (293)
..+.++.++||||+..... +... +..........+|++++|+|+.......+.. ...++.+...+.++
T Consensus 46 -----~~~~~~~liDT~G~~~~~~~~~~~-~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~-----~~~~l~~~~~piil 114 (435)
T PRK00093 46 -----WLGREFILIDTGGIEPDDDGFEKQ-IREQAELAIEEADVILFVVDGRAGLTPADEE-----IAKILRKSNKPVIL 114 (435)
T ss_pred -----ECCcEEEEEECCCCCCcchhHHHH-HHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCcEEE
Confidence 1335689999999876222 1111 1112233446789999999998643332211 23455566789999
Q ss_pred EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 192 ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 192 vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+||+|+.+.++ .+... .. +.+..++.+|+.+|.|++++.+++.+
T Consensus 115 v~NK~D~~~~~~------~~~~~-~~--------------lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 115 VVNKVDGPDEEA------DAYEF-YS--------------LGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred EEECccCccchh------hHHHH-Hh--------------cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 999999754221 11111 11 12345788999999999998888754
No 47
>PRK11058 GTPase HflX; Provisional
Probab=99.57 E-value=3e-14 Score=132.90 Aligned_cols=161 Identities=20% Similarity=0.300 Sum_probs=99.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
..+|.|+++|.+|||||||+|+|+ +.+++ +.+.++++.......+. +
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt----~~~~~-v~~~~~tTld~~~~~i~-------------l--------------- 241 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRIT----EARVY-AADQLFATLDPTLRRID-------------V--------------- 241 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh----CCcee-eccCCCCCcCCceEEEE-------------e---------------
Confidence 356899999999999999999999 55555 56666653322111110 0
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--
Q 022736 110 ALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-- 185 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-- 185 (293)
.+...++|+||+|+.. |....+.| ...+.....+|.+++|+|+++....... . .+...+.++
T Consensus 242 --------~~~~~~~l~DTaG~~r~lp~~lve~f--~~tl~~~~~ADlIL~VvDaS~~~~~e~l-~---~v~~iL~el~~ 307 (426)
T PRK11058 242 --------ADVGETVLADTVGFIRHLPHDLVAAF--KATLQETRQATLLLHVVDAADVRVQENI-E---AVNTVLEEIDA 307 (426)
T ss_pred --------CCCCeEEEEecCcccccCCHHHHHHH--HHHHHHhhcCCEEEEEEeCCCccHHHHH-H---HHHHHHHHhcc
Confidence 1122578999999743 55555543 2345566789999999999864321110 0 011223333
Q ss_pred -hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 186 -AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 186 -~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
..+.++|+||+|+.+... ..+. . ... .....+.+||++|+|+++|.+++.+.
T Consensus 308 ~~~pvIiV~NKiDL~~~~~-----~~~~-~-~~~--------------~~~~~v~ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 308 HEIPTLLVMNKIDMLDDFE-----PRID-R-DEE--------------NKPIRVWLSAQTGAGIPLLFQALTER 360 (426)
T ss_pred CCCCEEEEEEcccCCCchh-----HHHH-H-Hhc--------------CCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 367899999999975321 1111 0 000 01124678999999999999888653
No 48
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.57 E-value=1.3e-14 Score=117.59 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-cCEEEEeCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDLV 199 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D~~ 199 (293)
..+.++||||..... .........+|.+++|+|+......... .....+..... +.++++||+|+.
T Consensus 51 ~~~~~~DtpG~~~~~--------~~~~~~~~~ad~ii~V~d~~~~~~~~~~-----~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 KRLGFIDVPGHEKFI--------KNMLAGAGGIDLVLLVVAADEGIMPQTR-----EHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred cEEEEEECCChHHHH--------HHHHhhhhcCCEEEEEEECCCCccHhHH-----HHHHHHHHhCCCcEEEEEECcccc
Confidence 457899999974321 1112234578999999999752111110 01122333444 789999999997
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+.........++.+.++... ....+++++|+++++|++++..++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 118 DEDWLELVEEEIRELLAGTF------------LADAPIFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred CHHHHHHHHHHHHHHHHhcC------------cCCCcEEEEeCCCCcCHHHHHHHHh
Confidence 64211011223333333210 0124678999999999999887764
No 49
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.57 E-value=7.2e-15 Score=119.88 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~ 196 (293)
+.++.++||||..........+ ...++.+++|+|+........... .+..+.. ....|.++++||+
T Consensus 49 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~~~~v~vvd~~~~~~~~~~~~---~~~~~~~~~~~~~~p~ilv~NK~ 117 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKY--------YAECHAIIYVIDSTDRERFEESKS---ALEKVLRNEALEGVPLLILANKQ 117 (167)
T ss_pred CEEEEEEECCCChhhHHHHHHH--------hCCCCEEEEEEECchHHHHHHHHH---HHHHHHhChhhcCCCEEEEEEcc
Confidence 4678899999976544333221 246788999999976432211100 0111111 1246889999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+.. ...++...++...... + .....++.+||++|+|++++..|+.+
T Consensus 118 D~~~~~----~~~~~~~~~~~~~~~~-------~-~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 118 DLPDAL----SVEEIKEVFQDKAEEI-------G-RRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ccccCC----CHHHHHHHhccccccc-------c-CCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 987643 2344555444332110 0 01135789999999999999999853
No 50
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.56 E-value=1.5e-14 Score=121.27 Aligned_cols=176 Identities=14% Similarity=0.164 Sum_probs=101.6
Q ss_pred cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce
Q 022736 20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI 99 (293)
Q Consensus 20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci 99 (293)
|...-++......|-++++|.+|+|||||+|+|+... .++.+...+|.+..++..
T Consensus 12 ~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~---~~~~~~~~~~~t~~~~~~---------------------- 66 (196)
T PRK00454 12 SAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRK---NLARTSKTPGRTQLINFF---------------------- 66 (196)
T ss_pred hhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---CcccccCCCCceeEEEEE----------------------
Confidence 4444455556677889999999999999999999421 133444444432111100
Q ss_pred eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCc---HHHHH--hhhcchhhccccccccEEEEEcccchHHHHhhhcc
Q 022736 100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANP---APLAS--VLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 174 (293)
Q Consensus 100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~---~~~~~--~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~ 174 (293)
..+.++.|+||||+... ....+ ..+...++.....++.+++++|+..........
T Consensus 67 ------------------~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-- 126 (196)
T PRK00454 67 ------------------EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ-- 126 (196)
T ss_pred ------------------ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHH--
Confidence 00145889999996432 11010 111122334444567788889976533222110
Q ss_pred cCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhh
Q 022736 175 LSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGL 254 (293)
Q Consensus 175 ~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~ 254 (293)
...++.....+.++++||+|+.+..+ ...+...++...... ...++++|+++++|++++.++
T Consensus 127 ---i~~~l~~~~~~~iiv~nK~Dl~~~~~----~~~~~~~i~~~l~~~-----------~~~~~~~Sa~~~~gi~~l~~~ 188 (196)
T PRK00454 127 ---MIEWLKEYGIPVLIVLTKADKLKKGE----RKKQLKKVRKALKFG-----------DDEVILFSSLKKQGIDELRAA 188 (196)
T ss_pred ---HHHHHHHcCCcEEEEEECcccCCHHH----HHHHHHHHHHHHHhc-----------CCceEEEEcCCCCCHHHHHHH
Confidence 22334445567899999999986542 233232232221110 135678999999999999988
Q ss_pred hhhh
Q 022736 255 LEEH 258 (293)
Q Consensus 255 l~~~ 258 (293)
+...
T Consensus 189 i~~~ 192 (196)
T PRK00454 189 IAKW 192 (196)
T ss_pred HHHH
Confidence 8653
No 51
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.56 E-value=1.9e-14 Score=130.08 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=95.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
++-|+|+|++|||||||+|+|.+. +. .+.+.+.++.....-.+. +
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~----~~-~va~y~fTT~~p~ig~v~-------------~----------------- 201 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAA----KP-KIADYPFTTLVPNLGVVR-------------V----------------- 201 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcC----Cc-cccCCCCCccCCEEEEEE-------------e-----------------
Confidence 455999999999999999999953 22 244544442211110000 0
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHHH-----H
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAIH-----Q 184 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~~-----q 184 (293)
.+..++.|+||||+.+.......+ ...++++..+++.+++|+|+.... ........ +...+. .
T Consensus 202 ------~~~~~~~i~D~PGli~~a~~~~gL-g~~flrhierad~ll~VvD~s~~~~~~~~e~l~~---l~~EL~~~~~~l 271 (329)
T TIGR02729 202 ------DDGRSFVIADIPGLIEGASEGAGL-GHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEI---IRNELKKYSPEL 271 (329)
T ss_pred ------CCceEEEEEeCCCcccCCcccccH-HHHHHHHHHhhCEEEEEEcCccccccCHHHHHHH---HHHHHHHhhhhh
Confidence 112568999999986543221111 122345556789999999997531 11111100 111111 1
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
...+.++|+||+|+.++. ...++.+.+.+.. . ..++.+||++++|++++..++.+
T Consensus 272 ~~kp~IIV~NK~DL~~~~----~~~~~~~~l~~~~-------------~-~~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 272 AEKPRIVVLNKIDLLDEE----ELAELLKELKKAL-------------G-KPVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred ccCCEEEEEeCccCCChH----HHHHHHHHHHHHc-------------C-CcEEEEEccCCcCHHHHHHHHHH
Confidence 246889999999997653 2233333332211 1 24788999999999999988764
No 52
>COG2262 HflX GTPases [General function prediction only]
Probab=99.55 E-value=1.6e-14 Score=130.09 Aligned_cols=169 Identities=22% Similarity=0.335 Sum_probs=109.0
Q ss_pred cccCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcce
Q 022736 20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI 99 (293)
Q Consensus 20 ~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gci 99 (293)
....++...+..+|.|.++|+.|||||||+|+|... .+.+-.-=|.+ ...+.+.+. +
T Consensus 180 R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~----~~~~~d~LFAT-LdpttR~~~-------------l----- 236 (411)
T COG2262 180 REPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGA----DVYVADQLFAT-LDPTTRRIE-------------L----- 236 (411)
T ss_pred HHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhcc----Ceecccccccc-ccCceeEEE-------------e-----
Confidence 334455666778999999999999999999999932 22221111222 222221111 0
Q ss_pred eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC
Q 022736 100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS 177 (293)
Q Consensus 100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~ 177 (293)
.++..+++-||.|+.. |..+.++| ...+.+....|.++.|||++... ..... ..
T Consensus 237 ------------------~~g~~vlLtDTVGFI~~LP~~LV~AF--ksTLEE~~~aDlllhVVDaSdp~-~~~~~---~~ 292 (411)
T COG2262 237 ------------------GDGRKVLLTDTVGFIRDLPHPLVEAF--KSTLEEVKEADLLLHVVDASDPE-ILEKL---EA 292 (411)
T ss_pred ------------------CCCceEEEecCccCcccCChHHHHHH--HHHHHHhhcCCEEEEEeecCChh-HHHHH---HH
Confidence 2346789999999665 66666665 46788889999999999998752 11111 11
Q ss_pred chHHHHHH---hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhh
Q 022736 178 YPEAIHQI---AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGL 254 (293)
Q Consensus 178 ~~~~~~qi---~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~ 254 (293)
....+.++ ..|.++|+||+|++.... ....+.... ...+.+||.+|.|++.|.+.
T Consensus 293 v~~vL~el~~~~~p~i~v~NKiD~~~~~~-------~~~~~~~~~---------------~~~v~iSA~~~~gl~~L~~~ 350 (411)
T COG2262 293 VEDVLAEIGADEIPIILVLNKIDLLEDEE-------ILAELERGS---------------PNPVFISAKTGEGLDLLRER 350 (411)
T ss_pred HHHHHHHcCCCCCCEEEEEecccccCchh-------hhhhhhhcC---------------CCeEEEEeccCcCHHHHHHH
Confidence 23344444 357899999999987641 111221111 14578899999999999887
Q ss_pred hhh
Q 022736 255 LEE 257 (293)
Q Consensus 255 l~~ 257 (293)
+.+
T Consensus 351 i~~ 353 (411)
T COG2262 351 IIE 353 (411)
T ss_pred HHH
Confidence 754
No 53
>PRK09866 hypothetical protein; Provisional
Probab=99.55 E-value=6.8e-14 Score=132.87 Aligned_cols=124 Identities=17% Similarity=0.126 Sum_probs=82.7
Q ss_pred CCCEEEEecCCCCCcHHH-HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc--cCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--ADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~--a~iivlNK~ 196 (293)
..+++||||||+..+..- ....+. .....+|.|++|+|+.......+.. +...+.+... +.++|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~----eqL~eADvVLFVVDat~~~s~~Dee-----Ilk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLN----QQLARASAVLAVLDYTQLKSISDEE-----VREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHH----HHHhhCCEEEEEEeCCCCCChhHHH-----HHHHHHhcCCCCCEEEEEEcc
Confidence 478999999999876422 222222 2457889999999998654333321 2344455553 899999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCC
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKS 262 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~ 262 (293)
|+.+..+ ...+.+...++..... ..+++.+++++||+.|.|++.|.+.+..+...|
T Consensus 300 Dl~dree--ddkE~Lle~V~~~L~q--------~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l~ 355 (741)
T PRK09866 300 DQQDRNS--DDADQVRALISGTLMK--------GCITPQQIFPVSSMWGYLANRARHELANNGKLP 355 (741)
T ss_pred cCCCccc--chHHHHHHHHHHHHHh--------cCCCCceEEEEeCCCCCCHHHHHHHHHhCCCCC
Confidence 9975332 2345666665533111 123567899999999999999999998765544
No 54
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.55 E-value=1.7e-14 Score=116.26 Aligned_cols=153 Identities=21% Similarity=0.213 Sum_probs=88.3
Q ss_pred EEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHHHh
Q 022736 37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQ 116 (293)
Q Consensus 37 i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l~~ 116 (293)
|+|..|+|||||+|++.. .+ ..+...+|.+.......+.
T Consensus 1 l~G~~~~GKssl~~~~~~----~~-~~~~~~~~~t~~~~~~~~~------------------------------------ 39 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG----AR-QKVGNWPGVTVEKKEGRFK------------------------------------ 39 (158)
T ss_pred CCCCCCCCHHHHHHHHhc----Cc-ccccCCCCcccccceEEEe------------------------------------
Confidence 579999999999999984 32 2233334432211111110
Q ss_pred hcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeC
Q 022736 117 RKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNK 195 (293)
Q Consensus 117 ~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK 195 (293)
..+.++.++||||+.+..... +..+....+.. ..+|.+++|+|+........ ....+.+...+.++|+||
T Consensus 40 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~-------~~~~~~~~~~~~iiv~NK 110 (158)
T cd01879 40 -LGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIVNVVDATNLERNLY-------LTLQLLELGLPVVVALNM 110 (158)
T ss_pred -eCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEEEEeeCCcchhHHH-------HHHHHHHcCCCEEEEEeh
Confidence 123468899999976532210 00011111222 47889999999986432211 112233446789999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+.+.... ........+.++ ..++.+|+.++.|+.++..++..
T Consensus 111 ~Dl~~~~~~---~~~~~~~~~~~~---------------~~~~~iSa~~~~~~~~l~~~l~~ 154 (158)
T cd01879 111 IDEAEKRGI---KIDLDKLSELLG---------------VPVVPTSARKGEGIDELKDAIAE 154 (158)
T ss_pred hhhcccccc---hhhHHHHHHhhC---------------CCeEEEEccCCCCHHHHHHHHHH
Confidence 999765432 111222222211 24688999999999998888754
No 55
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.53 E-value=2.9e-14 Score=141.52 Aligned_cols=162 Identities=25% Similarity=0.230 Sum_probs=103.1
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
...|.|+|+|.+|+|||||+|+|+ +.+.+++...+|.+ ++.+...
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~----~~~~~iv~~~pGvT----~d~~~~~--------------------------- 317 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRIL----GRREAVVEDTPGVT----RDRVSYD--------------------------- 317 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCee----EEEEEEE---------------------------
Confidence 346889999999999999999999 66778888888752 2222110
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
...++..+.++||||+.....-....+..........+|++++|+|+.......+.. +...+.....+.
T Consensus 318 ------~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~-----i~~~Lr~~~~pv 386 (712)
T PRK09518 318 ------AEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDER-----IVRMLRRAGKPV 386 (712)
T ss_pred ------EEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHhcCCCE
Confidence 002345688999999764221111111122233346789999999997643333221 233445567899
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
++|+||+|+..... ......+ +.+..++++||.+|.|++++.+++.+.
T Consensus 387 IlV~NK~D~~~~~~------~~~~~~~---------------lg~~~~~~iSA~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 387 VLAVNKIDDQASEY------DAAEFWK---------------LGLGEPYPISAMHGRGVGDLLDEALDS 434 (712)
T ss_pred EEEEECcccccchh------hHHHHHH---------------cCCCCeEEEECCCCCCchHHHHHHHHh
Confidence 99999999865321 1111111 122345789999999999998887643
No 56
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.53 E-value=3.4e-14 Score=120.16 Aligned_cols=159 Identities=20% Similarity=0.340 Sum_probs=91.9
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
...+.|+|+|++|||||||+|++++. .+ .+.+.++.+.......+ .+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~----~~-~~~~~~~~t~~~~~~~~-------------~~--------------- 85 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGA----DV-YAEDQLFATLDPTTRRL-------------RL--------------- 85 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcc----hh-ccCCccceeccceeEEE-------------Ee---------------
Confidence 45789999999999999999999953 21 11222221111000000 00
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCc--HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-
Q 022736 110 ALEQLVQRKERLDHILLETTGLANP--APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA- 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~--~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~- 186 (293)
.+..++.|+||||+.+. ......+ ...+.....+|.+++|+|+......... ..+...+.++.
T Consensus 86 --------~~~~~~~i~Dt~G~~~~~~~~~~~~~--~~~~~~~~~~d~ii~v~D~~~~~~~~~~----~~~~~~l~~~~~ 151 (204)
T cd01878 86 --------PDGREVLLTDTVGFIRDLPHQLVEAF--RSTLEEVAEADLLLHVVDASDPDYEEQI----ETVEKVLKELGA 151 (204)
T ss_pred --------cCCceEEEeCCCccccCCCHHHHHHH--HHHHHHHhcCCeEEEEEECCCCChhhHH----HHHHHHHHHcCc
Confidence 12236899999997542 2222221 1122334578999999999754322111 00223344433
Q ss_pred --ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 187 --~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.++|+||+|+.+... ....... ....++.+|++++.|++++..++..
T Consensus 152 ~~~~viiV~NK~Dl~~~~~-------~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 152 EDIPMILVLNKIDLLDDEE-------LEERLEA---------------GRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred CCCCEEEEEEccccCChHH-------HHHHhhc---------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 46799999999976542 1111110 1235789999999999999888753
No 57
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.53 E-value=1.6e-14 Score=136.10 Aligned_cols=153 Identities=23% Similarity=0.258 Sum_probs=100.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
+.++++|.+|+|||||+|+|+ +.+.+++.+.+|++.......+.
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~----~~~~a~v~~~~gtT~d~~~~~i~-------------------------------- 259 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALL----GEERAIVTDIAGTTRDVIEEHIN-------------------------------- 259 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHh----CCCCcccCCCCCcccccEEEEEE--------------------------------
Confidence 457889999999999999999 55667777777763221111110
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv 192 (293)
.++..+.++||||+.++....+.+.....+.....+|.+++|+|++........ ..+......+.++|
T Consensus 260 -----~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~-------~~l~~~~~~piiiV 327 (449)
T PRK05291 260 -----LDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDD-------EILEELKDKPVIVV 327 (449)
T ss_pred -----ECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHH-------HHHHhcCCCCcEEE
Confidence 123457899999987765554443333344556779999999999764322110 11111224688999
Q ss_pred EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+||+|+.+.... . . .....++.+|+++|+|+++|..++.+.
T Consensus 328 ~NK~DL~~~~~~----~------~---------------~~~~~~i~iSAktg~GI~~L~~~L~~~ 368 (449)
T PRK05291 328 LNKADLTGEIDL----E------E---------------ENGKPVIRISAKTGEGIDELREAIKEL 368 (449)
T ss_pred EEhhhccccchh----h------h---------------ccCCceEEEEeeCCCCHHHHHHHHHHH
Confidence 999999764311 0 0 011356889999999999999998654
No 58
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.53 E-value=3.5e-14 Score=134.85 Aligned_cols=166 Identities=22% Similarity=0.218 Sum_probs=97.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
..+-++++|.+|+|||||+|+|+ +....+++..+|++. +.+.. .++
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~----~~~~~~~s~~~gtT~----d~~~~---------~~~----------------- 255 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLA----GEERSVVDDVAGTTV----DPVDS---------LIE----------------- 255 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCccC----CcceE---------EEE-----------------
Confidence 46778999999999999999999 555556677777522 11110 000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHH---HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~---~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
.++..+.|+||||+....... +.+..-........+|++++|+|++......+.. ....+.....
T Consensus 256 -------~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-----~~~~~~~~~~ 323 (472)
T PRK03003 256 -------LGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-----VLSMVIEAGR 323 (472)
T ss_pred -------ECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCC
Confidence 123357899999974321110 1110001112335789999999998654332211 1222233456
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+.++|+||+|+.+.+. ...+...+...... ....+++.+||++|.|++++...+.
T Consensus 324 piIiV~NK~Dl~~~~~----~~~~~~~i~~~l~~----------~~~~~~~~~SAk~g~gv~~lf~~i~ 378 (472)
T PRK03003 324 ALVLAFNKWDLVDEDR----RYYLEREIDRELAQ----------VPWAPRVNISAKTGRAVDKLVPALE 378 (472)
T ss_pred CEEEEEECcccCChhH----HHHHHHHHHHhccc----------CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 8899999999986431 12233333321111 1224567899999999988876664
No 59
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.53 E-value=2.7e-14 Score=141.67 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=97.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
..++++|.+|+|||||+|+|.. .+. .+.|.+|.+.......+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg----~~~-~vgn~pGvTve~k~g~~~-------------------------------- 46 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTG----ARQ-RVGNWAGVTVERKEGQFS-------------------------------- 46 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCCceEeeEEEEEE--------------------------------
Confidence 4688999999999999999984 333 356777753311111110
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHH------HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736 113 QLVQRKERLDHILLETTGLANPAPL------ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~------~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
.++.++.++||||+.+.... .+... ..++ .....|.++.|+|+++....+. +...+.+.+
T Consensus 47 -----~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~-~~~l-~~~~aD~vI~VvDat~ler~l~-------l~~ql~e~g 112 (772)
T PRK09554 47 -----TTDHQVTLVDLPGTYSLTTISSQTSLDEQIA-CHYI-LSGDADLLINVVDASNLERNLY-------LTLQLLELG 112 (772)
T ss_pred -----cCceEEEEEECCCccccccccccccHHHHHH-HHHH-hccCCCEEEEEecCCcchhhHH-------HHHHHHHcC
Confidence 23456889999997653221 11111 1111 1246899999999998654332 122345567
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.|.++++||+|+.+......+.+++.+.+ . .+++++|+.+|+|++++.+.+.+.
T Consensus 113 iPvIvVlNK~Dl~~~~~i~id~~~L~~~L---G---------------~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 113 IPCIVALNMLDIAEKQNIRIDIDALSARL---G---------------CPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred CCEEEEEEchhhhhccCcHHHHHHHHHHh---C---------------CCEEEEEeecCCCHHHHHHHHHHh
Confidence 89999999999875443212222222222 1 246789999999999998887553
No 60
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.52 E-value=3.7e-14 Score=118.16 Aligned_cols=164 Identities=18% Similarity=0.144 Sum_probs=95.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+.+-++++|.+|||||||++++.. .+.+.+....+ .+...+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~----~~~~~~~~t~~----~~~~~~------------------------------- 56 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKN----DRLAQHQPTQH----PTSEEL------------------------------- 56 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhc----CCCcccCCccc----cceEEE-------------------------------
Confidence 346678999999999999999994 33222111111 110000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~ 187 (293)
..++.++.++||||........... ...++.+++|+|+............ +...+. ....
T Consensus 57 ------~~~~~~~~~~D~~G~~~~~~~~~~~--------~~~ad~ii~vvD~~~~~~~~~~~~~---l~~l~~~~~~~~~ 119 (184)
T smart00178 57 ------AIGNIKFTTFDLGGHQQARRLWKDY--------FPEVNGIVYLVDAYDKERFAESKRE---LDALLSDEELATV 119 (184)
T ss_pred ------EECCEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECCcHHHHHHHHHH---HHHHHcChhhcCC
Confidence 0123567899999986554444322 2468899999999764322111000 111111 1246
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|.++|+||+|+.... ..+++++.+.-...... ..........++++|+++|+|++++.+||.+
T Consensus 120 piliv~NK~Dl~~~~----~~~~i~~~l~l~~~~~~---~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 120 PFLILGNKIDAPYAA----SEDELRYALGLTNTTGS---KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred CEEEEEeCccccCCC----CHHHHHHHcCCCccccc---ccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 889999999986432 34566655532110000 0000123456899999999999999999864
No 61
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.52 E-value=5.9e-14 Score=139.36 Aligned_cols=165 Identities=19% Similarity=0.175 Sum_probs=100.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
..+-++++|.+|+|||||+|+|+ +.+..++...+|++...-...+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~----~~~~~~v~~~~gtT~d~~~~~~-------------~----------------- 494 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLT----HEERAVVNDLAGTTRDPVDEIV-------------E----------------- 494 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh----CccccccCCCCCCCcCcceeEE-------------E-----------------
Confidence 45788999999999999999999 5555666777776321110000 0
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHH--hhh-cchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLAS--VLW-LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~--~~~-~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
.++.++.|+||||+........ .+. .-........+|++++|+|++......+.. ..........
T Consensus 495 -------~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-----i~~~~~~~~~ 562 (712)
T PRK09518 495 -------IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-----VMSMAVDAGR 562 (712)
T ss_pred -------ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCC
Confidence 1334678999999764322111 111 011123346789999999998654332211 1222333467
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+.++|+||+|+.+.. ....+.+.++...+. ++..+++.+||++|.|++++.+.+
T Consensus 563 piIiV~NK~DL~~~~----~~~~~~~~~~~~l~~----------~~~~~ii~iSAktg~gv~~L~~~i 616 (712)
T PRK09518 563 ALVLVFNKWDLMDEF----RRQRLERLWKTEFDR----------VTWARRVNLSAKTGWHTNRLAPAM 616 (712)
T ss_pred CEEEEEEchhcCChh----HHHHHHHHHHHhccC----------CCCCCEEEEECCCCCCHHHHHHHH
Confidence 899999999998643 223444444432211 233566889999999988877655
No 62
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.52 E-value=4.8e-14 Score=115.10 Aligned_cols=161 Identities=21% Similarity=0.214 Sum_probs=86.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
|.++++|.+|+|||||+|+|+.. +.. +...++.+..+.....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~----~~~-~~~~~~~t~~~~~~~~--------------------------------- 42 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRA----KPE-VAPYPFTTKSLFVGHF--------------------------------- 42 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC----CCc-cCCCCCcccceeEEEE---------------------------------
Confidence 67899999999999999999953 211 1112221111100000
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhcc-ccccccEEEEEcccchHHH-HhhhcccCCchHHHHHH--hcc
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLES-AVRLDSIITVVDAKNLLFQ-IDKYRHLSSYPEAIHQI--AFA 188 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~-~~~~d~vi~vvDa~~~~~~-~~~~~~~~~~~~~~~qi--~~a 188 (293)
...+.++.|+||||+.+........+....+.. ....|.+++|+|+...... ..... .+...+.+. ..+
T Consensus 43 ----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~---~~~~~l~~~~~~~p 115 (168)
T cd01897 43 ----DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQL---SLFEEIKPLFKNKP 115 (168)
T ss_pred ----ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHH---HHHHHHHhhcCcCC
Confidence 012356899999997532100000000000101 1224789999999753210 01000 012222233 568
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.++|+||+|+.+..+ ........+ . ....++.+||++|+|++++..|+.+
T Consensus 116 vilv~NK~Dl~~~~~----~~~~~~~~~-~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 116 VIVVLNKIDLLTFED----LSEIEEEEE-L--------------EGEEVLKISTLTEEGVDEVKNKACE 165 (168)
T ss_pred eEEEEEccccCchhh----HHHHHHhhh-h--------------ccCceEEEEecccCCHHHHHHHHHH
Confidence 899999999976542 122111111 0 1135789999999999999988754
No 63
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.50 E-value=8.8e-14 Score=110.55 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=63.3
Q ss_pred EEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCC
Q 022736 124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPER 203 (293)
Q Consensus 124 iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~ 203 (293)
.++||||....... +..........+|.+++|+|+.+...... ..+......+.++|+||+|+.+...
T Consensus 38 ~~iDt~G~~~~~~~----~~~~~~~~~~~ad~vilv~d~~~~~s~~~--------~~~~~~~~~p~ilv~NK~Dl~~~~~ 105 (142)
T TIGR02528 38 GAIDTPGEYVENRR----LYSALIVTAADADVIALVQSATDPESRFP--------PGFASIFVKPVIGLVTKIDLAEADV 105 (142)
T ss_pred eeecCchhhhhhHH----HHHHHHHHhhcCCEEEEEecCCCCCcCCC--------hhHHHhccCCeEEEEEeeccCCccc
Confidence 48999996311111 11111223467899999999976544221 1222233458999999999875331
Q ss_pred CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 204 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 204 ~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
..+...+.++..+ ...++.+||++|+|++++..++.
T Consensus 106 ---~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 106 ---DIERAKELLETAG--------------AEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ---CHHHHHHHHHHcC--------------CCcEEEEecCCCCCHHHHHHHHh
Confidence 2344444444322 13568899999999999887763
No 64
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.50 E-value=2.2e-13 Score=110.35 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=92.1
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
|+++|.+|||||||+|.|... ..........+.+..+. ..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~---~~~~~~~~~~~~t~~~~--~~----------------------------------- 41 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNR---KKLARTSKTPGKTQLIN--FF----------------------------------- 41 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcC---CceeeecCCCCcceeEE--EE-----------------------------------
Confidence 688999999999999999942 12222333333211000 00
Q ss_pred HhhcCCCCEEEEecCCCCCc------HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 115 VQRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~------~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
..+..+.++||||+... ...... ....++.....++.+++++|.......... .+..++.....+
T Consensus 42 ---~~~~~~~~~D~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-----~~~~~l~~~~~~ 112 (170)
T cd01876 42 ---NVNDKFRLVDLPGYGYAKVSKEVKEKWGK-LIEEYLENRENLKGVVLLIDSRHGPTEIDL-----EMLDWLEELGIP 112 (170)
T ss_pred ---EccCeEEEecCCCccccccCHHHHHHHHH-HHHHHHHhChhhhEEEEEEEcCcCCCHhHH-----HHHHHHHHcCCC
Confidence 01125789999997653 111111 112233444567788999998754222111 123445555678
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.++++||+|+.+..+.......+...++.. ....+++++|++++.+.+++.+++.+
T Consensus 113 vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 113 FLVVLTKADKLKKSELAKALKEIKKELKLF-------------EIDPPIILFSSLKGQGIDELRALIEK 168 (170)
T ss_pred EEEEEEchhcCChHHHHHHHHHHHHHHHhc-------------cCCCceEEEecCCCCCHHHHHHHHHH
Confidence 899999999976543211112222222210 12246789999999999999998864
No 65
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.48 E-value=1.3e-13 Score=113.53 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=66.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~ 196 (293)
+..+.++||||........... ....+++++|+|+............ +..++. .-..+.++|+||+
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~~p~iiv~nK~ 125 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNY--------FESTDALIWVVDSSDRLRLDDCKRE---LKELLQEERLAGATLLILANKQ 125 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHHHH---HHHHHhChhhcCCCEEEEEECc
Confidence 3457899999976433333221 2467889999999875322111000 111111 1245789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
|+.+.. ..+++...++..... .....++.+||++|+|++++..|+.
T Consensus 126 Dl~~~~----~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 126 DLPGAL----SEEEIREALELDKIS----------SHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccccCC----CHHHHHHHhCccccC----------CCceEEEeccCCCCcCHHHHHHHHh
Confidence 987643 234444444321100 0113578999999999999998874
No 66
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.48 E-value=3.3e-14 Score=123.61 Aligned_cols=167 Identities=22% Similarity=0.230 Sum_probs=100.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
+.++-+.++|+||||||||+|+|.++.+ .|-...|.+ ....--.+..
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKp----kVa~YaFTT-L~P~iG~v~y---------------------------- 240 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKP----KVAHYAFTT-LRPHIGTVNY---------------------------- 240 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCC----cccccceee-eccccceeec----------------------------
Confidence 4466689999999999999999996532 333333322 1111000000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH--HHHhhhcccCCchHHH--HHH
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL--FQIDKYRHLSSYPEAI--HQI 185 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~--~~~~~~~~~~~~~~~~--~qi 185 (293)
.+..++-+-|.||+.+.+.....+- ...+++..+++.+++|||.+... .++.....+..-.+.+ ...
T Consensus 241 --------ddf~q~tVADiPGiI~GAh~nkGlG-~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~ 311 (366)
T KOG1489|consen 241 --------DDFSQITVADIPGIIEGAHMNKGLG-YKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLA 311 (366)
T ss_pred --------cccceeEeccCccccccccccCccc-HHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhc
Confidence 1223478999999888766654332 34578888999999999998761 1111111110001111 112
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..|.+||+||+|+.++++ .-++.+.+.++. ..++++||++++++++|...+.+
T Consensus 312 ~rp~liVaNKiD~~eae~--~~l~~L~~~lq~-----------------~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 312 DRPALIVANKIDLPEAEK--NLLSSLAKRLQN-----------------PHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCceEEEEeccCchhHHH--HHHHHHHHHcCC-----------------CcEEEeeeccccchHHHHHHHhh
Confidence 467899999999875431 112333333321 25799999999999988876653
No 67
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.48 E-value=5.6e-14 Score=115.32 Aligned_cols=158 Identities=23% Similarity=0.210 Sum_probs=86.8
Q ss_pred EEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHHHh
Q 022736 37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQ 116 (293)
Q Consensus 37 i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l~~ 116 (293)
++|++|||||||+|+|.. .+. .+.+.++++.......+.
T Consensus 1 iiG~~~~GKStll~~l~~----~~~-~~~~~~~~t~~~~~~~~~------------------------------------ 39 (176)
T cd01881 1 LVGLPNVGKSTLLNALTN----AKP-KVANYPFTTLEPNLGVVE------------------------------------ 39 (176)
T ss_pred CCCCCCCcHHHHHHHHhc----CCc-cccCCCceeecCcceEEE------------------------------------
Confidence 579999999999999994 333 223333331111111000
Q ss_pred hcC-CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-----HHHhhhcccCCchHHH--H-----
Q 022736 117 RKE-RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-----FQIDKYRHLSSYPEAI--H----- 183 (293)
Q Consensus 117 ~~~-~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-----~~~~~~~~~~~~~~~~--~----- 183 (293)
.. +.++.|+||||+.+.....+.+. .........+|.+++|+|+.... ......... ..+.. .
T Consensus 40 -~~~~~~~~i~DtpG~~~~~~~~~~~~-~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 115 (176)
T cd01881 40 -VPDGARIQVADIPGLIEGASEGRGLG-NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEIL--NAELKLYDLETIL 115 (176)
T ss_pred -cCCCCeEEEEeccccchhhhcCCCcc-HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHH--HHHHHHhhhhhHH
Confidence 12 45688999999854322111111 11223345688999999997652 111110000 01111 1
Q ss_pred --HHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 184 --QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 184 --qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
....|.++|+||+|+.+... ........... .....++.+|++++.|++++.+++.
T Consensus 116 ~~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 116 GLLTAKPVIYVLNKIDLDDAEE----LEEELVRELAL-------------EEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred HHHhhCCeEEEEEchhcCchhH----HHHHHHHHHhc-------------CCCCCEEEEehhhhcCHHHHHHHHH
Confidence 13678999999999986542 12211011110 0124578999999999999988764
No 68
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.48 E-value=1.1e-13 Score=116.03 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=70.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
+..+.++||||... +. ..+......+|.+++|+|+.......... ..........+.++++||+|+.
T Consensus 67 ~~~~~i~DtpG~~~---~~-----~~~~~~~~~~d~vi~VvD~~~~~~~~~~~-----~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 67 NLQITLVDCPGHAS---LI-----RTIIGGAQIIDLMLLVVDATKGIQTQTAE-----CLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred CceEEEEECCCcHH---HH-----HHHHHHHhhCCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECcccC
Confidence 56789999999732 22 12223345678999999998643221110 1112222356789999999998
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+..+.....+++.+.++...... + ....+++++|+++|+|+++|.+++.+.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~~~~~-------~-~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 134 PEEERERKIEKMKKKLQKTLEKT-------R-FKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc-------C-cCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 64322122344444443221100 0 012357899999999999999998754
No 69
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.1e-13 Score=131.92 Aligned_cols=156 Identities=18% Similarity=0.175 Sum_probs=108.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
..++++|-||+|||||+|+|... + ..|.|.+|.|+.-..-.+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~----~-q~VgNwpGvTVEkkeg~~~-------------------------------- 46 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA----N-QKVGNWPGVTVEKKEGKLK-------------------------------- 46 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc----C-ceecCCCCeeEEEEEEEEE--------------------------------
Confidence 34899999999999999999954 2 2468899963321111111
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHH--HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLA--SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~--~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
..+.++-++|.||+....+.. +... .+++ ...+.|.+|.|+||++....+.- .-.+.+++.+.+
T Consensus 47 -----~~~~~i~ivDLPG~YSL~~~S~DE~Va-r~~l-l~~~~D~ivnVvDAtnLeRnLyl-------tlQLlE~g~p~i 112 (653)
T COG0370 47 -----YKGHEIEIVDLPGTYSLTAYSEDEKVA-RDFL-LEGKPDLIVNVVDATNLERNLYL-------TLQLLELGIPMI 112 (653)
T ss_pred -----ecCceEEEEeCCCcCCCCCCCchHHHH-HHHH-hcCCCCEEEEEcccchHHHHHHH-------HHHHHHcCCCeE
Confidence 234568899999976533222 2111 1111 23567899999999998876642 234456788999
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+++|++|.......+-+.+++.+.+. -++++++|.+|+|.+++...+.+
T Consensus 113 laLNm~D~A~~~Gi~ID~~~L~~~LG------------------vPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 113 LALNMIDEAKKRGIRIDIEKLSKLLG------------------VPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred EEeccHhhHHhcCCcccHHHHHHHhC------------------CCEEEEEeecCCCHHHHHHHHHH
Confidence 99999998877665566777777774 45788999999999988877654
No 70
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.46 E-value=1.7e-13 Score=109.48 Aligned_cols=115 Identities=23% Similarity=0.204 Sum_probs=70.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
..++.++||||+.+........ ..........+|.+++++|+.......... +.....+...+.++|+||+|+.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~-~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGRER-EELARRVLERADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred CCcEEEEECCCCCccccchhhH-HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEccccC
Confidence 4678999999987654333210 011112235688999999998765443321 1223344567899999999998
Q ss_pred CCCCCcchHHHHHH---HHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 200 SPERSGDSLDELEK---EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 200 ~~~~~~~~~~~~~~---~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..... ..... ..... ....+++.+|+.++.|+.++.+++.+
T Consensus 118 ~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~sa~~~~~v~~l~~~l~~ 161 (163)
T cd00880 118 PEEEE----EELLELRLLILLL-------------LLGLPVIAVSALTGEGIDELREALIE 161 (163)
T ss_pred ChhhH----HHHHHHHHhhccc-------------ccCCceEEEeeeccCCHHHHHHHHHh
Confidence 75421 22211 11111 12356788999999999999888754
No 71
>PRK04213 GTP-binding protein; Provisional
Probab=99.46 E-value=2.5e-13 Score=114.47 Aligned_cols=169 Identities=20% Similarity=0.209 Sum_probs=90.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+.+-++++|.+|+|||||+|+|.. .+. .....+|. +.....-
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~----~~~-~~~~~~~~----t~~~~~~----------------------------- 49 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTG----KKV-RVGKRPGV----TRKPNHY----------------------------- 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCce----eeCceEE-----------------------------
Confidence 346789999999999999999984 221 12233342 1110000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCc-------HHHHHhhhcchhhc-cccccccEEEEEcccchHHHHhhhccc------C
Q 022736 111 LEQLVQRKERLDHILLETTGLANP-------APLASVLWLDDQLE-SAVRLDSIITVVDAKNLLFQIDKYRHL------S 176 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~-------~~~~~~~~~~~~~~-~~~~~d~vi~vvDa~~~~~~~~~~~~~------~ 176 (293)
.. .++.++||||+... ....+..+ ..++. ....++.+++|+|+..+.......... .
T Consensus 50 -------~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~ 120 (201)
T PRK04213 50 -------DW-GDFILTDLPGFGFMSGVPKEVQEKIKDEI-VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDV 120 (201)
T ss_pred -------ee-cceEEEeCCccccccccCHHHHHHHHHHH-HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHH
Confidence 01 14789999996321 11111111 11122 334577899999997543211100000 0
Q ss_pred CchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 177 SYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 177 ~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+...+.....+.++|+||+|+.+..+ ....++.+.+ +-... .... ...++++||++| |++++.+|+.
T Consensus 121 ~l~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~---~~~~~-----~~~~-~~~~~~~SA~~g-gi~~l~~~l~ 188 (201)
T PRK04213 121 EMFDFLRELGIPPIVAVNKMDKIKNRD--EVLDEIAERL---GLYPP-----WRQW-QDIIAPISAKKG-GIEELKEAIR 188 (201)
T ss_pred HHHHHHHHcCCCeEEEEECccccCcHH--HHHHHHHHHh---cCCcc-----cccc-CCcEEEEecccC-CHHHHHHHHH
Confidence 012223334678999999999875431 1223333222 21000 0000 124789999999 9999999987
Q ss_pred hh
Q 022736 257 EH 258 (293)
Q Consensus 257 ~~ 258 (293)
+.
T Consensus 189 ~~ 190 (201)
T PRK04213 189 KR 190 (201)
T ss_pred Hh
Confidence 54
No 72
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.45 E-value=2.7e-13 Score=111.25 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=87.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
..-++++|++|||||||++++... .........| .+...+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~----~~~~~~~t~g----~~~~~i~------------------------------- 54 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE----DISHITPTQG----FNIKTVQ------------------------------- 54 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC----CCcccCCCCC----cceEEEE-------------------------------
Confidence 455889999999999999999843 1111111111 1100000
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH---HHHhcc
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI---HQIAFA 188 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~---~qi~~a 188 (293)
..+.++.++|++|.......... ....++.+++|+|+............ ..... .....|
T Consensus 55 ------~~~~~~~~~D~~G~~~~~~~~~~--------~~~~~~~ii~v~D~~~~~~~~~~~~~---~~~~~~~~~~~~~p 117 (173)
T cd04155 55 ------SDGFKLNVWDIGGQRAIRPYWRN--------YFENTDCLIYVIDSADKKRLEEAGAE---LVELLEEEKLAGVP 117 (173)
T ss_pred ------ECCEEEEEEECCCCHHHHHHHHH--------HhcCCCEEEEEEeCCCHHHHHHHHHH---HHHHHhChhhcCCC
Confidence 12356789999996543222211 12456789999999864322111000 01111 122467
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.++++||+|+.+... ...+.+.++. . .+. . ....++.+|+++|+|++++..|+.
T Consensus 118 ~ivv~nK~D~~~~~~----~~~i~~~l~~-~---~~~----~--~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 118 VLVFANKQDLATAAP----AEEIAEALNL-H---DLR----D--RTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred EEEEEECCCCccCCC----HHHHHHHcCC-c---ccC----C--CeEEEEEeECCCCCCHHHHHHHHh
Confidence 889999999876432 2344333321 1 000 0 012457899999999999999985
No 73
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.44 E-value=3.2e-13 Score=109.40 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=66.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-----HHhccCEEEEe
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-----QIAFADVVILN 194 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-----qi~~a~iivlN 194 (293)
+..+.++||||........... ...++.+++|+|+............ ...... .-..|.++|+|
T Consensus 44 ~~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~iiv~N 112 (162)
T cd04157 44 NLSFTAFDMSGQGKYRGLWEHY--------YKNIQGIIFVIDSSDRLRLVVVKDE---LELLLNHPDIKHRRVPILFFAN 112 (162)
T ss_pred CEEEEEEECCCCHhhHHHHHHH--------HccCCEEEEEEeCCcHHHHHHHHHH---HHHHHcCcccccCCCCEEEEEe
Confidence 3457899999976544443322 2468899999999865432110000 011111 12468899999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+|+.+... ..++...++. ..+ .. . ...++.+||++|+|++++..|+.+
T Consensus 113 K~Dl~~~~~----~~~~~~~l~~----~~~---~~--~-~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 113 KMDLPDALT----AVKITQLLGL----ENI---KD--K-PWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CccccCCCC----HHHHHHHhCC----ccc---cC--c-eEEEEEeeCCCCCchHHHHHHHhc
Confidence 999976431 2333333321 100 00 0 124788999999999999999853
No 74
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.44 E-value=2.7e-13 Score=113.35 Aligned_cols=113 Identities=22% Similarity=0.292 Sum_probs=72.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
....+.||||||..+. . .........+|.+|+|||+.......... +.....+...+.++++||+|+
T Consensus 68 ~~~~i~~iDtPG~~~f---~-----~~~~~~~~~~D~ailvVda~~g~~~~~~~-----~l~~~~~~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDF---I-----KEMIRGLRQADIAILVVDANDGIQPQTEE-----HLKILRELGIPIIVVLNKMDL 134 (188)
T ss_dssp SSEEEEEEEESSSHHH---H-----HHHHHHHTTSSEEEEEEETTTBSTHHHHH-----HHHHHHHTT-SEEEEEETCTS
T ss_pred cccceeecccccccce---e-----ecccceecccccceeeeeccccccccccc-----ccccccccccceEEeeeeccc
Confidence 4567899999996432 1 11233456789999999998654433221 344556677889999999999
Q ss_pred CCCCCCcchHHHHHHHHH-----hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIH-----EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~-----~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
... .+.+..+.++ .+.-.- -...+++++|+.+|.|++.|.+.+.++
T Consensus 135 ~~~-----~~~~~~~~~~~~l~~~~~~~~---------~~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 135 IEK-----ELEEIIEEIKEKLLKEYGENG---------EEIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp SHH-----HHHHHHHHHHHHHHHHTTSTT---------TSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred hhh-----hHHHHHHHHHHHhccccccCc---------cccceEEEEecCCCCCHHHHHHHHHHh
Confidence 832 2333333332 221100 012468899999999999999888654
No 75
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.44 E-value=2.1e-12 Score=106.54 Aligned_cols=110 Identities=19% Similarity=0.152 Sum_probs=67.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
+..+.|+||||..+....... ....+|++++|+|+.......... ......+...+.++|+||+|+.
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~--------~~~~ad~~i~v~D~~~~~~~~~~~-----~~~~~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSR--------SLAACEGALLLVDATQGVEAQTLA-----NFYLALENNLEIIPVINKIDLP 132 (179)
T ss_pred cEEEEEEECCCChhhHHHHHH--------HHHhcCeEEEEEECCCCccHhhHH-----HHHHHHHcCCCEEEEEECCCCC
Confidence 456789999998765443322 224688999999997643221110 0111222356789999999986
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.. .....+.+..... .+...++.+|+++|+|++++..++...
T Consensus 133 ~~~-----~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 133 SAD-----PERVKQQIEDVLG-----------LDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred cCC-----HHHHHHHHHHHhC-----------CCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 532 1222223322211 112357899999999999999988654
No 76
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.44 E-value=4.4e-13 Score=108.52 Aligned_cols=112 Identities=15% Similarity=0.067 Sum_probs=66.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~ 196 (293)
+..+.++||||..........+ ...++.+++|+|+........... .+...+.+ -..|.++|+||+
T Consensus 42 ~~~~~i~Dt~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd04151 42 NLKFQVWDLGGQTSIRPYWRCY--------YSNTDAIIYVVDSTDRDRLGTAKE---ELHAMLEEEELKGAVLLVFANKQ 110 (158)
T ss_pred CEEEEEEECCCCHHHHHHHHHH--------hcCCCEEEEEEECCCHHHHHHHHH---HHHHHHhchhhcCCcEEEEEeCC
Confidence 3467899999986544433222 246888999999986532211100 01111111 146899999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
|+.+.. ...++...+...... . . ..+++++|+++|.|++++.+|+.
T Consensus 111 Dl~~~~----~~~~i~~~~~~~~~~--------~-~-~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 111 DMPGAL----SEAEISEKLGLSELK--------D-R-TWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CCCCCC----CHHHHHHHhCccccC--------C-C-cEEEEEeeccCCCCHHHHHHHHh
Confidence 987543 123343333211100 0 0 12478999999999999998875
No 77
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.44 E-value=5.9e-13 Score=106.21 Aligned_cols=111 Identities=16% Similarity=0.199 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
..+.++||||..+......... ..........|.++.|+|+.......... ......+ ..+.++++||+|+..
T Consensus 50 ~~~~~~D~~G~~~~~~~~~~~~-~~~~~~i~~~d~~~~v~~~~~~~~~~~~~-----~~~~~~~-~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 50 YKFNLLDTAGQEDYRAIRRLYY-RAVESSLRVFDIVILVLDVEEILEKQTKE-----IIHHAES-NVPIILVGNKIDLRD 122 (161)
T ss_pred EEEEEEECCCcccchHHHHHHH-hhhhEEEEEEEEeeeehhhhhHhHHHHHH-----HHHhccc-CCcEEEEEEcccCCc
Confidence 4578999999665544433222 22222334455555555554433211110 1111122 568999999999976
Q ss_pred CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.. ...+..+.+..++. ..++++|+.++.|++++.+++.
T Consensus 123 ~~----~~~~~~~~~~~~~~--------------~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 123 AK----LKTHVAFLFAKLNG--------------EPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred ch----hhHHHHHHHhhccC--------------CceEEeecCCCCCHHHHHHHhh
Confidence 42 12333333433321 3478999999999999988874
No 78
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.43 E-value=6.6e-13 Score=107.44 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.++||||........... ....+.+++|+|+.+......... .+...+.. -..|.++|+||+|
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~--------~~~~~~iv~v~D~~~~~~~~~~~~---~~~~~~~~~~~~~~piilv~nK~D 112 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCY--------LENTDGLVYVVDSSDEARLDESQK---ELKHILKNEHIKGVPVVLLANKQD 112 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHH--------hccCCEEEEEEECCcHHHHHHHHH---HHHHHHhchhhcCCCEEEEEECcc
Confidence 457899999976433332211 245788999999987542211100 01112211 2468899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+.... ...++...++. .. . ... ....++.+||++|+|++++..++.
T Consensus 113 l~~~~----~~~~i~~~~~~-~~---~---~~~--~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 113 LPGAL----TAEEITRRFKL-KK---Y---CSD--RDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cccCc----CHHHHHHHcCC-cc---c---CCC--CcEEEEecccccCCChHHHHHHHh
Confidence 86432 12333333320 00 0 000 012478899999999999988774
No 79
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.43 E-value=9.6e-13 Score=106.96 Aligned_cols=104 Identities=14% Similarity=0.181 Sum_probs=64.8
Q ss_pred EEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-HHhccCEEEEeCCCCCCCCC
Q 022736 125 LLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-QIAFADVVILNKVDLVSPER 203 (293)
Q Consensus 125 iidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-qi~~a~iivlNK~D~~~~~~ 203 (293)
+|||||.....+-.. .........+|.+++|+|+........ ..... ....+.++++||+|+.+.+
T Consensus 41 ~iDtpG~~~~~~~~~----~~~~~~~~~ad~il~v~d~~~~~s~~~--------~~~~~~~~~~~ii~v~nK~Dl~~~~- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWY----HALITTLQDVDMLIYVHGANDPESRLP--------AGLLDIGVSKRQIAVISKTDMPDAD- 107 (158)
T ss_pred cccCCccccCCHHHH----HHHHHHHhcCCEEEEEEeCCCcccccC--------HHHHhccCCCCeEEEEEccccCccc-
Confidence 699999644322111 111223467899999999985532211 11111 1235789999999986532
Q ss_pred CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 204 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 204 ~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
...+.+.++..... .+++.+|+++|+|++++..++.+.
T Consensus 108 ----~~~~~~~~~~~~~~-------------~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 108 ----VAATRKLLLETGFE-------------EPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred ----HHHHHHHHHHcCCC-------------CCEEEEECCCccCHHHHHHHHHHh
Confidence 35555555543211 367889999999999999888654
No 80
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.42 E-value=1.3e-12 Score=105.79 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=64.7
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLV 199 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D~~ 199 (293)
.+.++||||..........+ ...++.+++|+|........... .. +.....+.. .|.++++||+|+.
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~~~~~-~~--~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSY--------IRDSSVAVVVYDITNRQSFDNTD-KW--IDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEECCCcHHHHHHHHHH--------hccCCEEEEEEECcCHHHHHHHH-HH--HHHHHHhCCCCCEEEEEEEChhcc
Confidence 47899999965443333222 24578899999998654322110 00 111222222 6789999999996
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+..+ ...++.....+..+ ..++.+|+.++.|++++..++.+
T Consensus 119 ~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 119 DKRQ--VSTEEGEKKAKELN---------------AMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ccCc--cCHHHHHHHHHHhC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 5432 12333333333322 23577999999999999988754
No 81
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.42 E-value=4.9e-13 Score=102.81 Aligned_cols=114 Identities=29% Similarity=0.306 Sum_probs=69.5
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
|+|+|.+|||||||+|+|+ +.+.+.+.+.++++....... ..
T Consensus 2 V~iiG~~~~GKSTlin~l~----~~~~~~~~~~~~~T~~~~~~~-------------~~--------------------- 43 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALT----GKKLAKVSNIPGTTRDPVYGQ-------------FE--------------------- 43 (116)
T ss_dssp EEEEESTTSSHHHHHHHHH----TSTSSEESSSTTSSSSEEEEE-------------EE---------------------
T ss_pred EEEECCCCCCHHHHHHHHh----ccccccccccccceeeeeeee-------------ee---------------------
Confidence 6889999999999999999 444455666666522221100 00
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHh-hhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEE
Q 022736 115 VQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~-~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivl 193 (293)
..+..+.|+||||+.+....... -.....+.....+|.+++|+|+.......... +...++ -..+.++|+
T Consensus 44 ---~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~-----~~~~l~-~~~~~i~v~ 114 (116)
T PF01926_consen 44 ---YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKN-----ILRELK-NKKPIILVL 114 (116)
T ss_dssp ---ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHH-----HHHHHH-TTSEEEEEE
T ss_pred ---eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH-----HHHHHh-cCCCEEEEE
Confidence 12345789999998875433321 11223445557789999999987732211110 122222 456789999
Q ss_pred eC
Q 022736 194 NK 195 (293)
Q Consensus 194 NK 195 (293)
||
T Consensus 115 NK 116 (116)
T PF01926_consen 115 NK 116 (116)
T ss_dssp ES
T ss_pred cC
Confidence 98
No 82
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.41 E-value=3.1e-13 Score=131.11 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=90.3
Q ss_pred ecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHHHhhc
Q 022736 39 GFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRK 118 (293)
Q Consensus 39 G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l~~~~ 118 (293)
|.+|+|||||+|+|.. .+. .+.+.+|.+.......+. .
T Consensus 1 G~pNvGKSSL~N~Ltg----~~~-~v~n~pG~Tv~~~~~~i~-------------------------------------~ 38 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG----ANQ-TVGNWPGVTVEKKEGKLG-------------------------------------F 38 (591)
T ss_pred CCCCCCHHHHHHHHhC----CCC-eecCCCCeEEEEEEEEEE-------------------------------------E
Confidence 8899999999999994 332 456777753222111111 1
Q ss_pred CCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D 197 (293)
++.++.++||||..+..... +......++ .....|.++.|+|+++....+.. .....+.+.+.++++||+|
T Consensus 39 ~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l-~~~~aDvvI~VvDat~ler~l~l-------~~ql~~~~~PiIIVlNK~D 110 (591)
T TIGR00437 39 QGEDIEIVDLPGIYSLTTFSLEEEVARDYL-LNEKPDLVVNVVDASNLERNLYL-------TLQLLELGIPMILALNLVD 110 (591)
T ss_pred CCeEEEEEECCCccccCccchHHHHHHHHH-hhcCCCEEEEEecCCcchhhHHH-------HHHHHhcCCCEEEEEehhH
Confidence 22357899999976543221 001111111 12367999999999875433221 1122334678999999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+......+. +.+.+.. + .+++++||++|+|++++.+++.+.
T Consensus 111 l~~~~~i~~d~----~~L~~~l-------------g-~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 111 EAEKKGIRIDE----EKLEERL-------------G-VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred HHHhCCChhhH----HHHHHHc-------------C-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 87544321111 2222211 1 246889999999999999888643
No 83
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.41 E-value=6.3e-13 Score=110.95 Aligned_cols=122 Identities=15% Similarity=0.116 Sum_probs=68.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~D 197 (293)
..+.++|+||.......... .....+.+++|+|+........... .+..... ....|.++++||+|
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~--------~~~~ad~iilV~D~~~~~s~~~~~~---~~~~i~~~~~~~~~pvivv~NK~D 131 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKD--------YFPEVDGIVFLVDAADPERFQESKE---ELDSLLSDEELANVPFLILGNKID 131 (190)
T ss_pred EEEEEEECCCCHHHHHHHHH--------HhccCCEEEEEEECCcHHHHHHHHH---HHHHHHcCccccCCCEEEEEeCCC
Confidence 45779999996543322221 1245688999999976432111100 0111111 12367899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCC-EEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLA-HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a-~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.... ..+++++.++...... +++...........++.+||++|+|++++.+|+.+
T Consensus 132 l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 132 LPGAV----SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred CCCCc----CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence 86532 3466666665322110 01111011111235789999999999999999864
No 84
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.41 E-value=8.3e-13 Score=106.71 Aligned_cols=112 Identities=17% Similarity=0.152 Sum_probs=67.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~ 196 (293)
..++.++||||..........+. ...+.+++|+|+............ +..... .-..+.++++||+
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~D~~~~~~~~~~~~~---~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYY--------ENTNGIIFVVDSSDRERIEEAKEE---LHKLLNEEELKGVPLLIFANKQ 110 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHh--------ccCCEEEEEEECCCHHHHHHHHHH---HHHHHhCcccCCCcEEEEeecc
Confidence 35688999999755433332221 356889999999865321111000 111111 1245789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
|+.... ..+++.+.++...... ...+++.+|+++|.|++++..++.
T Consensus 111 D~~~~~----~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 111 DLPGAL----SVSELIEKLGLEKILG----------RRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred CCcccc----CHHHHHHhhChhhccC----------CcEEEEEeeCCCCCCHHHHHHHHh
Confidence 988643 2455555554332110 113578899999999999988774
No 85
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.41 E-value=9.3e-13 Score=108.06 Aligned_cols=111 Identities=16% Similarity=0.071 Sum_probs=65.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.++||+|..........+ ...++++|+|+|+.+......... .+.+.+.. -..+.++|.||+|
T Consensus 53 ~~~~l~Dt~G~~~~~~~~~~~--------~~~a~~ii~v~D~t~~~s~~~~~~---~~~~~~~~~~~~~~piilv~NK~D 121 (168)
T cd04149 53 VKFNVWDVGGQDKIRPLWRHY--------YTGTQGLIFVVDSADRDRIDEARQ---ELHRIINDREMRDALLLVFANKQD 121 (168)
T ss_pred EEEEEEECCCCHHHHHHHHHH--------hccCCEEEEEEeCCchhhHHHHHH---HHHHHhcCHhhcCCcEEEEEECcC
Confidence 457899999986544443222 246789999999987432211100 01122211 1357899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+.+.. ..+++...++... . . .. ...++++||++|+|++++..||.
T Consensus 122 l~~~~----~~~~i~~~~~~~~----~----~-~~-~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 122 LPDAM----KPHEIQEKLGLTR----I----R-DR-NWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CccCC----CHHHHHHHcCCCc----c----C-CC-cEEEEEeeCCCCCChHHHHHHHh
Confidence 86432 2344444432110 0 0 00 12467899999999999999885
No 86
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.41 E-value=1.9e-12 Score=111.11 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=74.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccc--cccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV 196 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~--~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~ 196 (293)
.+..+.+|||||.... ... ..... ...|.+++|+|+.......+.. +..++...+.+.++++||+
T Consensus 82 ~~~~i~liDtpG~~~~---~~~-----~~~~~~~~~~D~~llVvda~~g~~~~d~~-----~l~~l~~~~ip~ivvvNK~ 148 (224)
T cd04165 82 SSKLVTFIDLAGHERY---LKT-----TLFGLTGYAPDYAMLVVAANAGIIGMTKE-----HLGLALALNIPVFVVVTKI 148 (224)
T ss_pred CCcEEEEEECCCcHHH---HHH-----HHHhhcccCCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEECc
Confidence 3566889999996432 111 11122 3578899999997654433321 3445566778899999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCC-CE--------EEE-eecC-CCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSL-AH--------VIR-SVRC-QVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~-a~--------i~~-~~~~-~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+++.++....+.++.+.++..... .+ +.. +... .-...++|.+|+.+|+|++.|..+|..
T Consensus 149 D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 149 DLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 9987543323333444444321100 00 000 0001 112347889999999999999988854
No 87
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.41 E-value=1.4e-12 Score=106.19 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=64.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
.++.|+||||.......... ....+|++++++|+.+........ .+...+.+. ..|.++|.||+|
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~--------~~~~~d~~llv~d~~~~~s~~~~~----~~~~~i~~~~~~~~p~ivv~nK~D 119 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQS--------YYRSANGAIIAYDITRRSSFESVP----HWIEEVEKYGASNVVLLLIGNKCD 119 (165)
T ss_pred EEEEEEECCChHHHHHHHHH--------HhccCCEEEEEEECcCHHHHHhHH----HHHHHHHHhCCCCCcEEEEEECcc
Confidence 45789999995432222211 124578999999998765432110 012222221 345789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. .........+... ...++.+|+++|.|++++..++..
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 120 LEEQREV--LFEEACTLAEKNG--------------MLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred ccccccc--CHHHHHHHHHHcC--------------CcEEEEEECCCCCCHHHHHHHHHH
Confidence 9765421 2334444333221 134678999999999998887753
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.41 E-value=6.7e-13 Score=107.53 Aligned_cols=106 Identities=16% Similarity=0.076 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH----HHhccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH----QIAFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~----qi~~a~iivlNK~ 196 (293)
.++.++||||........... ...+|.+++|+|........... . +...+. .-..+.++|.||+
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~-~---~~~~i~~~~~~~~~~~~iv~nK~ 116 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSY--------YRGAQGVILVYDVTRRDTFTNLE-T---WLNELETYSTNNDIVKMLVGNKI 116 (161)
T ss_pred EEEEEEECCCchhhhhhhHHH--------hCCCCEEEEEEECCCHHHHHhHH-H---HHHHHHHhCCCCCCcEEEEEECC
Confidence 457899999965433222211 24578999999998654422210 0 111111 1234579999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
|+..... ..+......+..+ ..++.+|+++|.|++++.+++.
T Consensus 117 D~~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 117 DKENREV---TREEGLKFARKHN---------------MLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ccccccc---CHHHHHHHHHHcC---------------CEEEEEecCCCCCHHHHHHHHH
Confidence 9974432 3344444444321 2368899999999998887764
No 89
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.40 E-value=1.6e-12 Score=106.04 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=64.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.++||+|.......... .....+++++|+|........ ... .+...+.+. ..+.++|.||+|
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~--------~~~~~~~~l~v~d~~~~~s~~-~~~---~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTA--------YYRGAMGFILMYDITNEESFN-AVQ---DWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEEECCChHHHHHHHHH--------HccCCcEEEEEEECCCHHHHH-HHH---HHHHHHHHhCCCCCCEEEEEECcc
Confidence 45789999996543333221 225688899999987653322 111 112222222 245799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+.... ..+...+..+.++ -.++.+||++|.|++++.+++..
T Consensus 118 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 118 MEDERVV--SSERGRQLADQLG---------------FEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred cCccccc--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHH
Confidence 9765421 2233333333221 13678999999999999888754
No 90
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.40 E-value=1.1e-12 Score=107.56 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=67.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~ 196 (293)
+..+.++||||........... ....|++++|+|++.......... .+....++. ..+.+++.||+
T Consensus 42 ~~~i~l~Dt~G~~~~~~~~~~~--------~~~ad~ii~V~D~s~~~s~~~~~~---~~~~~~~~~~~~~~piilv~NK~ 110 (169)
T cd04158 42 NLKFTIWDVGGKHKLRPLWKHY--------YLNTQAVVFVVDSSHRDRVSEAHS---ELAKLLTEKELRDALLLIFANKQ 110 (169)
T ss_pred CEEEEEEECCCChhcchHHHHH--------hccCCEEEEEEeCCcHHHHHHHHH---HHHHHhcChhhCCCCEEEEEeCc
Confidence 4567899999976554443222 245789999999976532211100 011222221 25788999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+.... ..+++.+.++ ++... ......++.+||++|.|++++..|+.+.
T Consensus 111 Dl~~~~----~~~~~~~~~~-~~~~~--------~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 111 DVAGAL----SVEEMTELLS-LHKLC--------CGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred CcccCC----CHHHHHHHhC-Ccccc--------CCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 986432 2344444442 21100 0001246788999999999999998653
No 91
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.40 E-value=3e-12 Score=106.50 Aligned_cols=117 Identities=20% Similarity=0.143 Sum_probs=65.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
+..+.++||+|..........+ ...+|++++|+|++...........+..+.........|.++|+||+|+.
T Consensus 51 ~~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 51 GITFHFWDVGGQEKLRPLWKSY--------TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred ceEEEEEECCCcHhHHHHHHHH--------hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 3457899999975443333222 24588899999998753321110000001111122346889999999986
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.. ..+.+...+. ++... ......++++||++|+|++++..++.+
T Consensus 123 ~~~----~~~~~~~~~~-~~~~~--------~~~~~~~~~~SA~~~~gi~~l~~~l~~ 167 (183)
T cd04152 123 NAL----SVSEVEKLLA-LHELS--------ASTPWHVQPACAIIGEGLQEGLEKLYE 167 (183)
T ss_pred ccC----CHHHHHHHhC-ccccC--------CCCceEEEEeecccCCCHHHHHHHHHH
Confidence 432 1233333332 11100 001124678999999999999888753
No 92
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.39 E-value=9.8e-13 Score=108.46 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=64.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~ 196 (293)
+..+.++||||.......... ....+|++++|+|++........... ....+.. ...|.++++||+
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~--------~~~~~d~vi~V~D~s~~~~~~~~~~~---l~~~~~~~~~~~~p~viv~NK~ 126 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNT--------YYTNTDAVILVIDSTDRERLPLTKEE---LYKMLAHEDLRKAVLLVLANKQ 126 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHH--------HhhcCCEEEEEEECCCHHHHHHHHHH---HHHHHhchhhcCCCEEEEEECC
Confidence 356889999997543322221 12467899999999865322111000 1111111 135779999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
|+.+.. ...++.+.+.... .. . .. ..++++||.+|+|++++..||.
T Consensus 127 Dl~~~~----~~~~i~~~l~~~~-----~~--~--~~-~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 127 DLKGAM----TPAEISESLGLTS-----IR--D--HT-WHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCCCCC----CHHHHHHHhCccc-----cc--C--Cc-eEEEecccCCCCCHHHHHHHHh
Confidence 986532 2234444332110 00 0 01 1468999999999999999885
No 93
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.39 E-value=1.1e-12 Score=110.23 Aligned_cols=109 Identities=23% Similarity=0.228 Sum_probs=62.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D 197 (293)
.+.++.||||||..+ +. .........+|.+++|+|+......... .+...+.+.+.+ .++++||+|
T Consensus 63 ~~~~i~~iDtPG~~~---~~-----~~~~~~~~~~D~~ilVvda~~g~~~~~~-----~~~~~~~~~~~~~iIvviNK~D 129 (195)
T cd01884 63 ANRHYAHVDCPGHAD---YI-----KNMITGAAQMDGAILVVSATDGPMPQTR-----EHLLLARQVGVPYIVVFLNKAD 129 (195)
T ss_pred CCeEEEEEECcCHHH---HH-----HHHHHHhhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCcEEEEEeCCC
Confidence 356789999999753 11 2224455679999999999765432221 123344455555 568899999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT 249 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~ 249 (293)
+++.++ ..+.+.+.++.+-..... . ....+++++||++|.+..
T Consensus 130 ~~~~~~---~~~~~~~~i~~~l~~~g~---~---~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 130 MVDDEE---LLELVEMEVRELLSKYGF---D---GDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCCcHH---HHHHHHHHHHHHHHHhcc---c---ccCCeEEEeeCccccCCC
Confidence 975332 223333333332111100 0 012457889999998753
No 94
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.39 E-value=9.1e-13 Score=110.62 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=64.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
++..+.++||||..+....... ....+|.+++|+|+.......... +.....+...+.++++||+|+
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~--------~~~~~d~~ilV~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVER--------VLSMVDGVLLLVDASEGPMPQTRF-----VLKKALELGLKPIVVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHH--------HHHhcCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEECCCC
Confidence 3456889999998654433322 225678999999997632111110 112223446788999999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGL 254 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~ 254 (293)
..... ....+++.+.+..+... .+..+ .+++.+||++|.|..++..|
T Consensus 130 ~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~-~~iv~~Sa~~g~~~~~~~~~ 176 (194)
T cd01891 130 PDARP-EEVVDEVFDLFIELGAT-------EEQLD-FPVLYASAKNGWASLNLEDP 176 (194)
T ss_pred CCCCH-HHHHHHHHHHHHHhCCc-------cccCc-cCEEEeehhccccccccccc
Confidence 75321 01223333333322211 01112 35788999999888665443
No 95
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.39 E-value=1.5e-12 Score=105.67 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~ 196 (293)
..+.++||||..+...+..... ...+.+++|+|..+...... ... +...+.+. ..|.+++.||+
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~piiiv~NK~ 117 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYM--------RTGEGFLLVFSVTDRGSFEE-VDK---FHTQILRVKDRDEFPMILVGNKA 117 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHH--------hhCCEEEEEEECCCHHHHHH-HHH---HHHHHHHHhCCCCCCEEEEeeCc
Confidence 3467899999776554443222 35788999999987543211 110 11122221 35789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+.... ...+..+..+..+ ..++.+||++|.|++++..++..
T Consensus 118 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~ 161 (164)
T cd04145 118 DLEHQRKV--SREEGQELARKLK---------------IPYIETSAKDRLNVDKAFHDLVR 161 (164)
T ss_pred ccccccee--cHHHHHHHHHHcC---------------CcEEEeeCCCCCCHHHHHHHHHH
Confidence 98764321 2233333333221 24688999999999998877743
No 96
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.39 E-value=1.2e-12 Score=104.92 Aligned_cols=112 Identities=15% Similarity=0.127 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~D 197 (293)
..+.++||||..........+ ....+.+++|+|+............ +..... ....|.++|+||+|
T Consensus 44 ~~~~~~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~p~iiv~nK~D 112 (159)
T cd04159 44 VTLKVWDLGGQPRFRSMWERY--------CRGVNAIVYVVDAADRTALEAAKNE---LHDLLEKPSLEGIPLLVLGNKND 112 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHHHH---HHHHHcChhhcCCCEEEEEeCcc
Confidence 457899999975544333222 2457889999999865432211000 011111 12357899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+... ...+...+.. ... .. ....++.+|+++|.|++++..|+.+
T Consensus 113 ~~~~~~----~~~~~~~~~~-~~~------~~---~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 113 LPGALS----VDELIEQMNL-KSI------TD---REVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCcC----HHHHHHHhCc-ccc------cC---CceEEEEEEeccCCChHHHHHHHhh
Confidence 876532 2222222210 000 00 1124678999999999999888753
No 97
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.7e-13 Score=123.26 Aligned_cols=170 Identities=22% Similarity=0.176 Sum_probs=105.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
+-++|+|+||+|||||+|+|. ...++||+..+|+ +++.+.. .+.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~----~~drsIVSpv~GT----TRDaiea---------~v~------------------- 312 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALS----REDRSIVSPVPGT----TRDAIEA---------QVT------------------- 312 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHh----cCCceEeCCCCCc----chhhhee---------Eee-------------------
Confidence 568889999999999999999 6778999999998 3333321 111
Q ss_pred HHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccc--hHHHHhhhcccC-----CchHHHHH
Q 022736 113 QLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLS-----SYPEAIHQ 184 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~--~~~~~~~~~~~~-----~~~~~~~q 184 (293)
-+++.+.++||+|+-+ .....+.+....+.+...+.|++++|+|+.. ....+.....+. ........
T Consensus 313 -----~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~ 387 (531)
T KOG1191|consen 313 -----VNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKM 387 (531)
T ss_pred -----cCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccc
Confidence 2567899999999887 4445555556666777889999999999943 222111000000 00000011
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEE-eecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR-SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~-~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..++.+++.||+|+...-. ++ +..++.. ...+.-.+..+..+|+.+++|.++|.+.+.+
T Consensus 388 ~~~~~i~~~nk~D~~s~~~------~~--------~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 388 EKQRIILVANKSDLVSKIP------EM--------TKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred cccceEEEechhhccCccc------cc--------cCCceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 3357789999999887521 00 1222211 1112112233344899999999988876643
No 98
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.39 E-value=1.8e-12 Score=104.94 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=64.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.++||||........... ....+.+++++|.......... ... +..+... ...|.++|+||+|
T Consensus 48 ~~~~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-~~~--~~~~~~~~~~~~~piiiv~NK~D 116 (164)
T cd04139 48 VQLNILDTAGQEDYAAIRDNY--------HRSGEGFLLVFSITDMESFTAT-AEF--REQILRVKDDDNVPLLLVGNKCD 116 (164)
T ss_pred EEEEEEECCChhhhhHHHHHH--------hhcCCEEEEEEECCCHHHHHHH-HHH--HHHHHHhcCCCCCCEEEEEEccc
Confidence 457899999976544433222 1345778888887654321110 000 1112222 3568899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+ .......+..+.++ .+++.+|+++++|++++..++.+
T Consensus 117 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 117 LEDKRQ--VSSEEAANLARQWG---------------VPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred cccccc--cCHHHHHHHHHHhC---------------CeEEEeeCCCCCCHHHHHHHHHH
Confidence 976321 12333344443332 24678999999999999888754
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.39 E-value=2e-12 Score=103.55 Aligned_cols=107 Identities=16% Similarity=0.128 Sum_probs=66.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
.++.++|+||..........+ ...+|.+++|+|+........ .. .+...+.+. ..+.++++||+|
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~d~ii~v~d~~~~~~~~~-~~---~~~~~~~~~~~~~~p~ivv~nK~D 116 (159)
T cd00154 49 VKLQIWDTAGQERFRSITPSY--------YRGAHGAILVYDITNRESFEN-LD---KWLKELKEYAPENIPIILVGNKID 116 (159)
T ss_pred EEEEEEecCChHHHHHHHHHH--------hcCCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhCCCCCcEEEEEEccc
Confidence 467899999975443333222 245789999999987432211 11 122223332 368899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+..+.+ ...+.+++..+..+ ..++.+|+.++.|++++..++.
T Consensus 117 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 117 LEDQRQ--VSTEEAQQFAKENG---------------LLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cccccc--ccHHHHHHHHHHcC---------------CeEEEEecCCCCCHHHHHHHHh
Confidence 973332 23344444444311 3468899999999999988764
No 100
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.39 E-value=9e-13 Score=123.69 Aligned_cols=122 Identities=24% Similarity=0.260 Sum_probs=75.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.-++++|.+|+|||||+|+|+ +...+++...+|++.. .+.. .+.
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~----~~~~aivs~~pgtTrd----~~~~---------~i~------------------- 247 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALL----KQDRAIVSDIKGTTRD----VVEG---------DFE------------------- 247 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCcEEE----EEEE---------EEE-------------------
Confidence 347789999999999999999 4555666777776322 1110 000
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI 192 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv 192 (293)
.++..+.++||||+.+.....+.............+|.+++|+|++........ +.........+.++|
T Consensus 248 -----~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~------~l~~~~~~~~piIlV 316 (442)
T TIGR00450 248 -----LNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF------LIIDLNKSKKPFILV 316 (442)
T ss_pred -----ECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH------HHHHHhhCCCCEEEE
Confidence 123446899999987655443322222233444678999999999764322110 111122225678999
Q ss_pred EeCCCCCCC
Q 022736 193 LNKVDLVSP 201 (293)
Q Consensus 193 lNK~D~~~~ 201 (293)
+||+|+.+.
T Consensus 317 ~NK~Dl~~~ 325 (442)
T TIGR00450 317 LNKIDLKIN 325 (442)
T ss_pred EECccCCCc
Confidence 999998643
No 101
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.38 E-value=1.3e-12 Score=106.07 Aligned_cols=108 Identities=17% Similarity=0.069 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~ 196 (293)
..+.++||||..+.......++ ...+.+++|+|+......... . .+...+.+ ...|.++|.||+
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~pii~v~nK~ 115 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYM--------RTGEGFLLVYSITDRQSFEEI-K---KFREQILRVKDRDDVPIVLVGNKC 115 (164)
T ss_pred EEEEEEECCCcccchHHHHHHH--------hhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCCEEEEEECc
Confidence 3467899999876554443222 457889999998764332111 0 01111111 135778999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+... ..........+..+ ..++.+||+++.|++++.+++.+
T Consensus 116 Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 116 DLESERV--VSTEEGKELARQWG---------------CPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred cccccce--EcHHHHHHHHHHcC---------------CEEEEeecCCCCCHHHHHHHHHH
Confidence 9876432 12233333333322 24688999999999999888754
No 102
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.38 E-value=1.5e-12 Score=105.05 Aligned_cols=105 Identities=16% Similarity=0.077 Sum_probs=62.3
Q ss_pred EEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCCCC
Q 022736 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVDL 198 (293)
Q Consensus 123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~D~ 198 (293)
+-++||+|......+...+. ...+.+++|+|......... ... +...+.+ -..|.++|.||+|+
T Consensus 51 ~~i~Dt~G~~~~~~l~~~~~--------~~~~~~i~v~~~~~~~s~~~-~~~---~~~~i~~~~~~~~~piivv~nK~Dl 118 (162)
T cd04138 51 LDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINSRKSFED-IHT---YREQIKRVKDSDDVPMVLVGNKCDL 118 (162)
T ss_pred EEEEECCCCcchHHHHHHHH--------hcCCEEEEEEECCCHHHHHH-HHH---HHHHHHHhcCCCCCCEEEEEECccc
Confidence 55899999766554443222 34677888888875432211 100 1112222 24578999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.. .....+....+..+ ..++.+|+++|.|++++..++.+
T Consensus 119 ~~~~---~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 119 AART---VSSRQGQDLAKSYG---------------IPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ccce---ecHHHHHHHHHHhC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence 7643 12333333333221 13678999999999999887753
No 103
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.38 E-value=1.1e-12 Score=106.66 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=64.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HH-------HhccCEEE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQ-------IAFADVVI 192 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~q-------i~~a~iiv 192 (293)
..+.|+||||..........+ ....+++|+|+|.++........ .+...+ .. ...+.++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~~ilv~D~~~~~s~~~~~----~~~~~~~~~~~~~~~~~~~piilv 116 (168)
T cd04119 49 VRVNFFDLSGHPEYLEVRNEF--------YKDTQGVLLVYDVTDRQSFEALD----SWLKEMKQEGGPHGNMENIVVVVC 116 (168)
T ss_pred EEEEEEECCccHHHHHHHHHH--------hccCCEEEEEEECCCHHHHHhHH----HHHHHHHHhccccccCCCceEEEE
Confidence 457799999975443333221 14578899999998654321110 011111 11 13568999
Q ss_pred EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.||+|+.+... ..........+..+ ..++.+|+++|.|++++..++..
T Consensus 117 ~nK~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 117 ANKIDLTKHRA--VSEDEGRLWAESKG---------------FKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred EEchhcccccc--cCHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence 99999974322 12333333333221 23578999999999999888753
No 104
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.38 E-value=3.5e-12 Score=104.41 Aligned_cols=106 Identities=16% Similarity=0.046 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN 194 (293)
..+.|+||||......+.. .....+|.+++|+|+.+...... ...++.++ ..+.++|.|
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~--------~~~~~~d~il~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~pvivv~n 117 (168)
T cd01866 53 IKLQIWDTAGQESFRSITR--------SYYRGAAGALLVYDITRRETFNH-------LTSWLEDARQHSNSNMTIMLIGN 117 (168)
T ss_pred EEEEEEECCCcHHHHHHHH--------HHhccCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCCcEEEEEE
Confidence 3578999999543222221 12246788999999986443222 12233222 346799999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+|+.+... ...++.+...+..+ ..++.+|+.+++|++++..++.+.
T Consensus 118 K~Dl~~~~~--~~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 118 KCDLESRRE--VSYEEGEAFAKEHG---------------LIFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred CcccccccC--CCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999975432 23344444443321 236789999999999988777543
No 105
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.37 E-value=3e-12 Score=103.80 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=64.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.++||||.......... .....+++++|+|+.+........ .+...+.+. ..+.+++.||+|
T Consensus 50 ~~~~i~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iivv~nK~D 117 (163)
T cd01860 50 VKFEIWDTAGQERYRSLAPM--------YYRGAAAAIVVYDITSEESFEKAK----SWVKELQRNASPNIIIALVGNKAD 117 (163)
T ss_pred EEEEEEeCCchHHHHHHHHH--------HhccCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECcc
Confidence 45779999995432222211 123578899999998654322110 012222222 245688999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+... .....+.+..+..+ ..++.+|+++|.|+.++.+++.+
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 118 LESKRQ--VSTEEAQEYADENG---------------LLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred ccccCc--CCHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHH
Confidence 875332 23444444444432 23688999999999999888754
No 106
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.37 E-value=3.8e-12 Score=106.54 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=64.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||||.......... ....+|++|+|+|..+....... .. +...+.+. ..|.++|.||+|
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~--------~~~~ad~~i~v~D~~~~~s~~~~-~~---~~~~i~~~~~~~~piiiv~NK~D 117 (191)
T cd04112 50 VKLQIWDTAGQERFRSVTHA--------YYRDAHALLLLYDITNKASFDNI-RA---WLTEIKEYAQEDVVIMLLGNKAD 117 (191)
T ss_pred EEEEEEeCCCcHHHHHhhHH--------HccCCCEEEEEEECCCHHHHHHH-HH---HHHHHHHhCCCCCcEEEEEEccc
Confidence 45779999995433222211 12457889999999875432111 00 11122222 357889999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+...... .........+..+ ..++.+|+++|.|++++..++.+.
T Consensus 118 l~~~~~~--~~~~~~~l~~~~~---------------~~~~e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 118 MSGERVV--KREDGERLAKEYG---------------VPFMETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred chhcccc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9754321 2233333333221 246788999999999999888653
No 107
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.37 E-value=5.2e-12 Score=110.03 Aligned_cols=136 Identities=17% Similarity=0.077 Sum_probs=76.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH------------Hhcc
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------------IAFA 188 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------------i~~a 188 (293)
+.+-|+||+|......+... .....|++|+|+|..+....... .. +...+.+ ...+
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~--------~~~~ad~iIlVfdv~~~~Sf~~i-~~---~~~~I~~~k~~~~~~~~~~~~~p 115 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRL--------SILTGDVFILVFSLDNRESFEEV-CR---LREQILETKSCLKNKTKENVKIP 115 (247)
T ss_pred EEEEEEECCCChhhhHHHHH--------HhccCCEEEEEEeCCCHHHHHHH-HH---HHHHHHHhhcccccccccCCCCc
Confidence 45679999997543322211 12457889999998765432111 00 1111111 1457
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCC
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHD 268 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~ 268 (293)
.++|.||+|+....+ ...+++.+.+...+ ...++.+||+++.|++++..++......|.....+
T Consensus 116 iIivgNK~Dl~~~~~--v~~~ei~~~~~~~~--------------~~~~~evSAktg~gI~elf~~L~~~~~~p~e~~~~ 179 (247)
T cd04143 116 MVICGNKADRDFPRE--VQRDEVEQLVGGDE--------------NCAYFEVSAKKNSNLDEMFRALFSLAKLPNEMSPS 179 (247)
T ss_pred EEEEEECccchhccc--cCHHHHHHHHHhcC--------------CCEEEEEeCCCCCCHHHHHHHHHHHhccccccCcc
Confidence 899999999975332 23455555554211 12468899999999999999887655444322211
Q ss_pred CCEEEEEEecCCCCCHH
Q 022736 269 NNVRTLSICEPLAVNLD 285 (293)
Q Consensus 269 ~~~~~~~~~~~~p~~~~ 285 (293)
.-+.+.+.+..++|+-
T Consensus 180 -~~~~~~~~~~~~~~~~ 195 (247)
T cd04143 180 -LHRKISVQYGDALHKK 195 (247)
T ss_pred -ccceeeeeeccccccc
Confidence 1234444444444443
No 108
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.37 E-value=7.7e-12 Score=102.21 Aligned_cols=109 Identities=18% Similarity=0.089 Sum_probs=64.3
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEeC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILNK 195 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlNK 195 (293)
.+.++|+||......+... ....++.+|+++|+....... ..... ......+. ..|.++|+||
T Consensus 50 ~~~~~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~p~ilv~nK 118 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVA--------FYRGADCCVLVYDVTNPKSFE-SLDSW--RDEFLIQASPSDPENFPFVVLGNK 118 (172)
T ss_pred EEEEEeCCChHHHHhHHHH--------HhcCCCEEEEEEECCCHHHHH-HHHHH--HHHHHHhcCccCCCCceEEEEEEC
Confidence 4569999996433222221 124578899999997654321 11000 01112211 4577999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+.++.. ...+.+....+... ...++.+|+.+|.|++++..++.+
T Consensus 119 ~Dl~~~~~--~~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~i~~ 164 (172)
T cd01862 119 IDLEEKRQ--VSTKKAQQWCQSNG--------------NIPYFETSAKEAINVEQAFETIAR 164 (172)
T ss_pred cccccccc--cCHHHHHHHHHHcC--------------CceEEEEECCCCCCHHHHHHHHHH
Confidence 99985322 12344444444322 135788999999999999888764
No 109
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.37 E-value=3.5e-12 Score=103.75 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.++||||........... ....+.+++|+|..+....... . .+...+.+. ..|.++|.||+|
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~pi~vv~nK~D 119 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDITKKQTFENV-E---RWLKELRDHADSNIVIMLVGNKSD 119 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHH--------HCCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 356799999975433333221 1356789999999864432211 0 011112221 256789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ..++..+..+.. . ..++.+|+++|.|++++..++..
T Consensus 120 l~~~~~~--~~~~~~~~~~~~--~-------------~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 120 LRHLRAV--PTEEAKAFAEKN--G-------------LSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred ccccccC--CHHHHHHHHHHc--C-------------CEEEEEECCCCCCHHHHHHHHHH
Confidence 8764321 233334333321 1 23678999999999999888753
No 110
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.37 E-value=1.5e-12 Score=107.57 Aligned_cols=110 Identities=17% Similarity=0.141 Sum_probs=64.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
+.+.++||||..+.......+ ...++.+++++|........... .. +....++ ...|.++++||+|
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~-~~--~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKY--------SIGIHGYILVYSVTSRKSFEVVK-VI--YDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEEEECCChHhhHHHHHHH--------HhhCCEEEEEEECCCHHHHHHHH-HH--HHHHHHhcCCCCCCEEEEEEchh
Confidence 456899999976543332221 23567789999988654321110 00 1112222 2347899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+....+. .........+..+ ..++++|++++.|++++..|+.+.
T Consensus 118 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (180)
T cd04137 118 LHTQRQV--STEEGKELAESWG---------------AAFLESSARENENVEEAFELLIEE 161 (180)
T ss_pred hhhcCcc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 8754321 2222333332221 246789999999999998887643
No 111
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.37 E-value=3.2e-12 Score=103.51 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
.++.|+||||......+...+ ....+.+++|+|......... ...+..++ ..|.++|.||
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~v~v~d~~~~~s~~~-------l~~~~~~~~~~~~~~p~iiv~nK 115 (162)
T cd04106 51 VRLMLWDTAGQEEFDAITKAY--------YRGAQACILVFSTTDRESFEA-------IESWKEKVEAECGDIPMVLVQTK 115 (162)
T ss_pred EEEEEeeCCchHHHHHhHHHH--------hcCCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCCEEEEEEC
Confidence 467899999965443333222 246788899999876543221 11222222 4578999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+.+..+. ..++.....+.++ -+++.+|++++.|++++..++..
T Consensus 116 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 116 IDLLDQAVI--TNEEAEALAKRLQ---------------LPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred hhcccccCC--CHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHH
Confidence 999765432 2233333333322 13678999999999999888753
No 112
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.37 E-value=2.5e-12 Score=104.46 Aligned_cols=112 Identities=15% Similarity=0.081 Sum_probs=64.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~ 196 (293)
...+.++||||..........+ ...+|++++|+|+........... .+.....+ -..|.+++.||+
T Consensus 43 ~~~~~l~D~~G~~~~~~~~~~~--------~~~ad~~i~v~D~~~~~s~~~~~~---~~~~~~~~~~~~~~piilv~NK~ 111 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRERIGEARE---ELQRMLNEDELRDAVLLVFANKQ 111 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHHHHHHHHH---HHHHHHhcHHhcCCCEEEEEECC
Confidence 3457899999986544333222 256789999999986432111100 01111111 125789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
|+.+.. ...++...+. ++. + ... ...++++||++|+|++++..||.
T Consensus 112 Dl~~~~----~~~~i~~~~~-~~~-~-----~~~---~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 112 DLPNAM----SAAEVTDKLG-LHS-L-----RNR---NWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCCCC----CHHHHHHHhC-ccc-c-----CCC---CEEEEEeeCCCCCCHHHHHHHHh
Confidence 986532 1233333331 110 0 000 12467899999999999999885
No 113
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.36 E-value=3.9e-12 Score=103.07 Aligned_cols=107 Identities=17% Similarity=0.073 Sum_probs=64.9
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVDL 198 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D~ 198 (293)
++.++|+||..........+ ...+|.+++|+|+.+........ .+...+.+ -..|.+++.||+|+
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~~~----~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSY--------YRGAVGALLVYDITNRESFENLK----NWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEECCChHHHHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEEchhc
Confidence 46799999964332222211 24578999999998755432210 01111111 13688999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+..+ ...+...+..+..+ .+++.+|+.++.|++++..++.+
T Consensus 118 ~~~~~--~~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 118 EDQRQ--VSREEAEAFAEEHG---------------LPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ccccC--CCHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 76432 13344444443321 13678999999999999888754
No 114
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.36 E-value=4.8e-12 Score=107.10 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=67.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch-HH-HHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LF-QIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~-~~-~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D 197 (293)
..+.||||||..+ +. ..++.....+|.+++|+|+... .. .... ....+...+. +.++++||+|
T Consensus 83 ~~i~~iDtPG~~~---~~-----~~~~~~~~~~D~~llVvd~~~~~~~~~t~~------~l~~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 83 RHVSFVDCPGHEI---LM-----ATMLSGAAVMDGALLLIAANEPCPQPQTSE------HLAALEIMGLKHIIIVQNKID 148 (203)
T ss_pred cEEEEEECCChHH---HH-----HHHHHhhhcCCEEEEEEECCCCCCCcchHH------HHHHHHHcCCCcEEEEEEchh
Confidence 5689999999532 22 2334455678999999999852 11 1110 1122222333 4688999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhcc
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY 260 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~ 260 (293)
+.+..+ .....+.+++...... .....++++||++|+|+++|.+++.+...
T Consensus 149 l~~~~~----~~~~~~~i~~~~~~~~--------~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 149 LVKEEQ----ALENYEQIKKFVKGTI--------AENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred ccCHHH----HHHHHHHHHHHHhccc--------cCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 986431 2222233332211100 01235789999999999999999976543
No 115
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.36 E-value=3e-12 Score=123.67 Aligned_cols=189 Identities=17% Similarity=0.165 Sum_probs=94.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC-ccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~-~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.|.|+++++|.+|+|||||+|+|... + +...++|. +..+....+.... ..++|.. ..
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~----~--v~~~e~ggiTq~iG~~~v~~~~------------~~~~~~~----~~ 59 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGS----A--VAKREAGGITQHIGATEIPMDV------------IEGICGD----LL 59 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc----c--cccccCCceecccCeeEeeecc------------ccccccc----cc
Confidence 47899999999999999999999943 2 22333332 0000000000000 0000000 00
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
. ..-.......+.|+||||......+.. ......|.+++|+|+.......... ....+.....+
T Consensus 60 ~---~~~v~~~~~~l~~iDTpG~e~f~~l~~--------~~~~~aD~~IlVvD~~~g~~~qt~e-----~i~~l~~~~vp 123 (590)
T TIGR00491 60 K---KFKIRLKIPGLLFIDTPGHEAFTNLRK--------RGGALADLAILIVDINEGFKPQTQE-----ALNILRMYKTP 123 (590)
T ss_pred c---ccccccccCcEEEEECCCcHhHHHHHH--------HHHhhCCEEEEEEECCcCCCHhHHH-----HHHHHHHcCCC
Confidence 0 000001123588999999654333221 1224688999999998643221110 12233445678
Q ss_pred CEEEEeCCCCCCCCCCcc----------hHHHH--------HHHHHhhcCC---CEEEEeecCCCCchhhcccccCCcch
Q 022736 189 DVVILNKVDLVSPERSGD----------SLDEL--------EKEIHEINSL---AHVIRSVRCQVDLSEVLNCRAYDATH 247 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~----------~~~~~--------~~~l~~lnp~---a~i~~~~~~~~~~~~i~~~sa~~~~~ 247 (293)
.++++||+|+.+...... ....+ ...+.++... ...+.........-.++++||++|+|
T Consensus 124 iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeG 203 (590)
T TIGR00491 124 FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEG 203 (590)
T ss_pred EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCC
Confidence 999999999974210000 00011 1111122111 10000000111224678999999999
Q ss_pred hhhhhhhhh
Q 022736 248 VTRLEGLLE 256 (293)
Q Consensus 248 ~~~l~~~l~ 256 (293)
+++|..++.
T Consensus 204 ideLl~~l~ 212 (590)
T TIGR00491 204 IPELLTMLA 212 (590)
T ss_pred hhHHHHHHH
Confidence 999998774
No 116
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.36 E-value=2.2e-12 Score=104.58 Aligned_cols=108 Identities=16% Similarity=0.085 Sum_probs=63.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~ 196 (293)
..+.|+||||......+...+. ...+++++|+|.......... . .+...+.+. ..|.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~piilv~nK~ 116 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYI--------KNGQGFVLVYSITSQSSFNDL-Q---DLREQILRVKDTENVPMVLVGNKC 116 (163)
T ss_pred EEEEEEECCCccccchHHHHHh--------hcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCCEEEEEECc
Confidence 3456899999766544443221 357889999998764432111 0 011122211 35778999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+.... .........+..+ .+++.+||++|.|+.++..++.+
T Consensus 117 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 117 DLEDERVV--SREEGQALARQWG---------------CPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ccccccee--cHHHHHHHHHHcC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence 98754321 1222222222111 24688999999999999888753
No 117
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.36 E-value=1.1e-11 Score=100.62 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=64.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
.++.++||||.......... ...+.|++++|+|.++....... ..+...+.+. ..+.++|.||+|+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~ii~v~d~~~~~s~~~~----~~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSN--------YWESPSVFILVYDVSNKASFENC----SRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEEECCCHHHHHHHHHH--------HhCCCCEEEEEEECcCHHHHHHH----HHHHHHHHHhCCCCCEEEEEECccc
Confidence 56889999996443333322 22567899999999875432211 0012222222 3678999999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+..+. ............+ ..++.+|++++.|++++..++.+
T Consensus 120 ~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 120 ADKAEV--TDAQAQAFAQANQ---------------LKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred ccccCC--CHHHHHHHHHHcC---------------CeEEEEeCCCCCChHHHHHHHHH
Confidence 765432 1111111111111 23678999999999999887753
No 118
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=5.6e-12 Score=110.64 Aligned_cols=166 Identities=20% Similarity=0.241 Sum_probs=94.2
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
....|.++|.|+||+|||||++.+.+. ++-|-..-|.+ -++.--.+.
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~A----kpEvA~YPFTT-K~i~vGhfe---------------------------- 211 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTA----KPEVAPYPFTT-KGIHVGHFE---------------------------- 211 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcC----CCccCCCCccc-cceeEeeee----------------------------
Confidence 446889999999999999999999954 33343333332 222110000
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHH-hhhcccCCchHHHHHHh
Q 022736 109 QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQI-DKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~-~~~~~~~~~~~~~~qi~ 186 (293)
.+...+-+|||||+.+ |..-.+.+-.++.++-..--+.|+|++|++....+. ..... .+.+......
T Consensus 212 ---------~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~--L~~eIk~~f~ 280 (346)
T COG1084 212 ---------RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQIS--LLEEIKELFK 280 (346)
T ss_pred ---------cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHH--HHHHHHHhcC
Confidence 1334678999999665 544444443233222222335689999998543211 11000 1223333344
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+.++|+||+|..+.+ .++++...+.... ..+.+.+++..+.+.+.+...+.
T Consensus 281 ~p~v~V~nK~D~~~~e----~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~d~~~~~v~ 332 (346)
T COG1084 281 APIVVVINKIDIADEE----KLEEIEASVLEEG--------------GEEPLKISATKGCGLDKLREEVR 332 (346)
T ss_pred CCeEEEEecccccchh----HHHHHHHHHHhhc--------------cccccceeeeehhhHHHHHHHHH
Confidence 6799999999998654 3455554433221 12345567777777766655443
No 119
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.36 E-value=2.4e-12 Score=104.66 Aligned_cols=109 Identities=13% Similarity=0.046 Sum_probs=64.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.|+||||......+..... ..+|++++|+|........... .. ....... -..|.++|.||+|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~~~-~~--~~~i~~~~~~~~~piilv~nK~D 117 (164)
T cd04175 49 CMLEILDTAGTEQFTAMRDLYM--------KNGQGFVLVYSITAQSTFNDLQ-DL--REQILRVKDTEDVPMILVGNKCD 117 (164)
T ss_pred EEEEEEECCCcccchhHHHHHH--------hhCCEEEEEEECCCHHHHHHHH-HH--HHHHHHhcCCCCCCEEEEEECCc
Confidence 3456899999866555443322 4567889999986543321110 00 1111111 1357899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+.... .........+..+ .+++.+||++|.|++++..|+.+
T Consensus 118 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 118 LEDERVV--GKEQGQNLARQWG---------------CAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred chhccEE--cHHHHHHHHHHhC---------------CEEEEeeCCCCCCHHHHHHHHHH
Confidence 9764321 2222222223222 24678999999999999888754
No 120
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.36 E-value=4.1e-12 Score=102.92 Aligned_cols=107 Identities=13% Similarity=0.037 Sum_probs=65.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.++||||.......... ....++.+++|+|..+........ .+...+.+. ..+.+++.||+|
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~iivv~nK~D 116 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRS--------YYRGAAGALLVYDITNRTSFEALP----TWLSDARALASPNIVVILVGNKSD 116 (161)
T ss_pred EEEEEEECcchHHHHHhHHH--------HhcCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEEchh
Confidence 35679999996433222221 124678999999998755432210 012222222 346889999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+....+ ..........+..+ ..++.+|++++.|++++..++.
T Consensus 117 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 117 LADQRE--VTFLEASRFAQENG---------------LLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred cchhcc--CCHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHH
Confidence 876432 13344444444322 2467899999999999988775
No 121
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.35 E-value=6.5e-12 Score=102.37 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=64.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+-++||||..........+ ....+++++|+|+++....... . .+...+.+. ..+.++|.||+|
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~--------~~~~~~ii~v~d~~~~~s~~~l-~---~~~~~~~~~~~~~~~~iiv~nK~D 118 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSY--------YRGAHGIIIVYDVTDQESFNNV-K---QWLQEIDRYASENVNKLLVGNKCD 118 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHH--------hCcCCEEEEEEECcCHHHHHhH-H---HHHHHHHHhCCCCCcEEEEEEChh
Confidence 346799999965433333222 1467899999999875432211 0 011122221 257799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+...... ...+.....+..+ .+++.+|+++|+|++++..++.+
T Consensus 119 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 119 LTDKRVV--DYSEAQEFADELG---------------IPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred cccccCC--CHHHHHHHHHHcC---------------CeEEEEECCCCcCHHHHHHHHHH
Confidence 8764422 2233333333211 24688999999999999887754
No 122
>PLN03118 Rab family protein; Provisional
Probab=99.35 E-value=6.1e-12 Score=107.04 Aligned_cols=109 Identities=20% Similarity=0.134 Sum_probs=65.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~ 196 (293)
..+.|+||||......+...+ ...++.+++|+|..+......... . +...+.. ...+.++|.||+
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~d~~vlv~D~~~~~sf~~~~~-~--~~~~~~~~~~~~~~~~ilv~NK~ 130 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSY--------YRNAQGIILVYDVTRRETFTNLSD-V--WGKEVELYSTNQDCVKMLVGNKV 130 (211)
T ss_pred EEEEEEECCCchhhHHHHHHH--------HhcCCEEEEEEECCCHHHHHHHHH-H--HHHHHHHhcCCCCCCEEEEEECc
Confidence 457899999976654443322 145788999999987543322100 0 1111111 123578999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+...... .........+..+ ..++.+|++++.|++++..++..
T Consensus 131 Dl~~~~~i--~~~~~~~~~~~~~---------------~~~~e~SAk~~~~v~~l~~~l~~ 174 (211)
T PLN03118 131 DRESERDV--SREEGMALAKEHG---------------CLFLECSAKTRENVEQCFEELAL 174 (211)
T ss_pred cccccCcc--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 98764321 2233333333221 13678999999999999888764
No 123
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.35 E-value=3.8e-12 Score=105.12 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=66.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--H-hccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--I-AFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i-~~a~iivlNK~ 196 (293)
...+.++||||..........+ ...++++|+|+|++.......... .+...+.+ . ..+.++|.||+
T Consensus 56 ~~~l~l~D~~G~~~~~~~~~~~--------~~~ad~ii~v~D~t~~~s~~~~~~---~l~~~~~~~~~~~~piilv~NK~ 124 (175)
T smart00177 56 NISFTVWDVGGQDKIRPLWRHY--------YTNTQGLIFVVDSNDRDRIDEARE---ELHRMLNEDELRDAVILVFANKQ 124 (175)
T ss_pred CEEEEEEECCCChhhHHHHHHH--------hCCCCEEEEEEECCCHHHHHHHHH---HHHHHhhCHhhcCCcEEEEEeCc
Confidence 3567899999986654444332 246788999999986432211100 01111111 1 24789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+.+.. ...++...+.... ... ....++++||++|+|+.++.+||.+.
T Consensus 125 Dl~~~~----~~~~i~~~~~~~~--------~~~--~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 125 DLPDAM----KAAEITEKLGLHS--------IRD--RNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred CcccCC----CHHHHHHHhCccc--------cCC--CcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 986542 1233333332110 000 11235689999999999999998654
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.35 E-value=5.9e-12 Score=104.05 Aligned_cols=159 Identities=22% Similarity=0.224 Sum_probs=94.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+---+++.|+.||||||++++|.. .+..-+.+..|- ++ ..+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~----~~~~~~~pT~g~--~~--~~i~----------------------------- 54 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN----GEISETIPTIGF--NI--EEIK----------------------------- 54 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS----SSEEEEEEESSE--EE--EEEE-----------------------------
T ss_pred CcEEEEEEECCCccchHHHHHHhhh----ccccccCccccc--cc--ceee-----------------------------
Confidence 4445568899999999999999984 222223333331 11 1110
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHh
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIA 186 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~ 186 (293)
..+..+.+.|.+|-....++...+. ..++++|+|||+............ +...+. ...
T Consensus 55 --------~~~~~~~~~d~gG~~~~~~~w~~y~--------~~~~~iIfVvDssd~~~l~e~~~~---L~~ll~~~~~~~ 115 (175)
T PF00025_consen 55 --------YKGYSLTIWDLGGQESFRPLWKSYF--------QNADGIIFVVDSSDPERLQEAKEE---LKELLNDPELKD 115 (175)
T ss_dssp --------ETTEEEEEEEESSSGGGGGGGGGGH--------TTESEEEEEEETTGGGGHHHHHHH---HHHHHTSGGGTT
T ss_pred --------eCcEEEEEEeccccccccccceeec--------cccceeEEEEecccceeecccccc---hhhhcchhhccc
Confidence 1345678999999654444443322 367899999999864321111100 111221 124
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.|.+|++||.|+.+.. ....+...+.-.. .. .. ..-.++.+|+.+|+|+.+..+||.+
T Consensus 116 ~piLIl~NK~D~~~~~----~~~~i~~~l~l~~-l~-------~~-~~~~v~~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 116 IPILILANKQDLPDAM----SEEEIKEYLGLEK-LK-------NK-RPWSVFSCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp SEEEEEEESTTSTTSS----THHHHHHHTTGGG-TT-------SS-SCEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred ceEEEEeccccccCcc----hhhHHHhhhhhhh-cc-------cC-CceEEEeeeccCCcCHHHHHHHHHh
Confidence 6789999999987754 3355555443111 00 00 1235788999999999999999864
No 125
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=1.7e-11 Score=103.46 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=66.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-H------HhccCEEEE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-Q------IAFADVVIL 193 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-q------i~~a~iivl 193 (293)
..+.|+||||......+...+ ...++++|+|+|.+......... .+...+. . -..|.++|.
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~--------~~~a~~~ilv~D~t~~~s~~~~~----~~~~~i~~~~~~~~~~~~piilv~ 117 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVY--------YRGAVGAIIVFDVTRPSTFEAVL----KWKADLDSKVTLPNGEPIPCLLLA 117 (201)
T ss_pred EEEEEEECCCchhhhhhHHHH--------hCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhcccCCCCCcEEEEE
Confidence 457899999975443333222 24678899999987654322110 0111111 1 234779999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
||+|+.+... ...+++.+..+..+ ...++.+|+++|.|++++..|+..
T Consensus 118 NK~Dl~~~~~--~~~~~~~~~~~~~~--------------~~~~~e~Sak~~~~v~e~f~~l~~ 165 (201)
T cd04107 118 NKCDLKKRLA--KDGEQMDQFCKENG--------------FIGWFETSAKEGINIEEAMRFLVK 165 (201)
T ss_pred ECCCcccccc--cCHHHHHHHHHHcC--------------CceEEEEeCCCCCCHHHHHHHHHH
Confidence 9999974222 23455555554332 134678999999999998888754
No 126
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.34 E-value=7.2e-12 Score=106.95 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=65.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh------ccCEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA------FADVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~------~a~iivlN 194 (293)
..+.|+||+|...+..+...+ ...+|++|+|+|.++....... . .+...+.+.. .+.++|.|
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~--------~~~ad~iilV~D~t~~~s~~~~-~---~w~~~l~~~~~~~~~~~piilVgN 117 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKY--------IYGAHAVFLVYDVTNSQSFENL-E---DWYSMVRKVLKSSETQPLVVLVGN 117 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHH--------hhcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhccccCCCceEEEEEE
Confidence 457899999975554444333 2468899999999875432211 0 0122222221 24678999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+|+.+.... ..++.....+..+ ...+.+||++|+|++++.+++...
T Consensus 118 K~DL~~~~~v--~~~~~~~~~~~~~---------------~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 118 KTDLEHNRTV--KDDKHARFAQANG---------------MESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred Cccccccccc--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999754321 2233333333221 124678999999999998888653
No 127
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.33 E-value=7.1e-12 Score=102.30 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=87.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
...-++++|.+|+|||||+++++... +....+.+.+.+.... .+...
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~-------~~~~~~~t~~~~~~~~-----------~~~~~--------------- 52 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGL-------FPPGQGATIGVDFMIK-----------TVEIK--------------- 52 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCceeeEEEEE-----------EEEEC---------------
Confidence 45779999999999999999998531 0111111111110000 00000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hc
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AF 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~ 187 (293)
.....+.++|+||.......... .....+.+++|+|.......... . .+...+.+. ..
T Consensus 53 -------~~~~~~~~~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~l~~~~~~~~ 113 (169)
T cd04114 53 -------GEKIKLQIWDTAGQERFRSITQS--------YYRSANALILTYDITCEESFRCL-P---EWLREIEQYANNKV 113 (169)
T ss_pred -------CEEEEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCC
Confidence 11234678999996443322221 12457889999999765332110 0 011112222 34
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.++|.||+|+.+..+. ...+.+.+....+ ..++.+|+++|.|+.++..++..
T Consensus 114 ~~i~v~NK~D~~~~~~i---~~~~~~~~~~~~~--------------~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 114 ITILVGNKIDLAERREV---SQQRAEEFSDAQD--------------MYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred eEEEEEECccccccccc---CHHHHHHHHHHcC--------------CeEEEeeCCCCCCHHHHHHHHHH
Confidence 56999999998754432 2233333333322 23578999999999999887753
No 128
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.33 E-value=3.3e-12 Score=103.10 Aligned_cols=107 Identities=19% Similarity=0.172 Sum_probs=64.7
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D~ 198 (293)
.+.++||||..........+ ...++.+++|+|..+........ .+...+.+. ..+.++++||+|+
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~piiiv~nK~D~ 117 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIY--------YRDADGAILVYDITDADSFQKVK----KWIKELKQMRGNNISLVIVGNKIDL 117 (162)
T ss_pred EEEEEECCchHHHHHhhHHH--------hccCCEEEEEEECCCHHHHHHHH----HHHHHHHHhCCCCCeEEEEEECccc
Confidence 47899999965443333221 13578899999987654321110 011122222 3578999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
...... ..+.+.+..+..+ ..++.+|++++.|++++..|+..
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~---------------~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 118 ERQRVV--SKSEAEEYAKSVG---------------AKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ccccCC--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 754321 2334444444322 23578999999999999988754
No 129
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.33 E-value=4.5e-12 Score=105.33 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=66.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~ 196 (293)
+..+.++|+||......+...+ ...+|++|+|+|+++......... .+...+.+ -..+.+++.||+
T Consensus 60 ~~~~~i~D~~Gq~~~~~~~~~~--------~~~a~~iI~V~D~s~~~s~~~~~~---~l~~~l~~~~~~~~piilv~NK~ 128 (181)
T PLN00223 60 NISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRDRVVEARD---ELHRMLNEDELRDAVLLVFANKQ 128 (181)
T ss_pred CEEEEEEECCCCHHHHHHHHHH--------hccCCEEEEEEeCCcHHHHHHHHH---HHHHHhcCHhhCCCCEEEEEECC
Confidence 3457899999975443333222 145789999999986543221100 01111111 135789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+.. ..+++.+.+.-.+... ....++++||++|+|+.++..|+.+
T Consensus 129 Dl~~~~----~~~~~~~~l~l~~~~~----------~~~~~~~~Sa~~g~gv~e~~~~l~~ 175 (181)
T PLN00223 129 DLPNAM----NAAEITDKLGLHSLRQ----------RHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
T ss_pred CCCCCC----CHHHHHHHhCccccCC----------CceEEEeccCCCCCCHHHHHHHHHH
Confidence 987643 2345555443111100 0013567899999999999999864
No 130
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.33 E-value=2e-11 Score=99.55 Aligned_cols=107 Identities=15% Similarity=0.070 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
.++.++||||.......... ....++++++|+|..+....... . .+....... ..+.++|.||+|
T Consensus 51 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~~~~ilv~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~iiiv~nK~D 118 (166)
T cd04122 51 IKLQIWDTAGQERFRAVTRS--------YYRGAAGALMVYDITRRSTYNHL-S---SWLTDARNLTNPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEEECCCcHHHHHHHHH--------HhcCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 45789999996543333322 12467899999999875432211 0 011111122 235789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+.+..+. ..++..+..+..+ ..++.+||++|+|++++..++.
T Consensus 119 l~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 119 LEAQRDV--TYEEAKQFADENG---------------LLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred cccccCc--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHH
Confidence 9765432 2344444443321 2467899999999998876654
No 131
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.33 E-value=2e-11 Score=102.66 Aligned_cols=165 Identities=17% Similarity=0.151 Sum_probs=90.4
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC-CCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
|+++|.+|+|||||+|.|+ |.+.+..... .+. +......
T Consensus 3 i~lvG~~g~GKSsl~N~il----g~~~~~~~~~~~~~----T~~~~~~-------------------------------- 42 (196)
T cd01852 3 LVLVGKTGAGKSATGNTIL----GREVFESKLSASSV----TKTCQKE-------------------------------- 42 (196)
T ss_pred EEEECCCCCCHHHHHHHhh----CCCccccccCCCCc----cccccee--------------------------------
Confidence 7889999999999999999 4444322221 111 1110000
Q ss_pred HHhhcCCCCEEEEecCCCCCcH----HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----
Q 022736 114 LVQRKERLDHILLETTGLANPA----PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---- 185 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~----~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---- 185 (293)
.....+.++.+|||||+.+.. .+... +..........++.+++|+|+..+... +.. ....+.++
T Consensus 43 -~~~~~~~~i~viDTPG~~d~~~~~~~~~~~-i~~~~~~~~~g~~~illVi~~~~~t~~-d~~-----~l~~l~~~fg~~ 114 (196)
T cd01852 43 -SAVWDGRRVNVIDTPGLFDTSVSPEQLSKE-IVRCLSLSAPGPHAFLLVVPLGRFTEE-EEQ-----AVETLQELFGEK 114 (196)
T ss_pred -eEEECCeEEEEEECcCCCCccCChHHHHHH-HHHHHHhcCCCCEEEEEEEECCCcCHH-HHH-----HHHHHHHHhChH
Confidence 000134568999999988753 12221 112222234568899999999874322 211 22233222
Q ss_pred -hccCEEEEeCCCCCCCCCCcch----HHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 186 -AFADVVILNKVDLVSPERSGDS----LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 186 -~~a~iivlNK~D~~~~~~~~~~----~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
-...++|+||.|.+..++.... -..++..++......-. +..... ++..+..+.+|.+.+.+
T Consensus 115 ~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~---------f~~~~~-~~~~~~q~~~Ll~~i~~ 181 (196)
T cd01852 115 VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA---------FNNKAK-GEEQEQQVKELLAKVES 181 (196)
T ss_pred hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE---------EeCCCC-cchhHHHHHHHHHHHHH
Confidence 2466899999998865432111 13445555544322111 223334 56677778888877765
No 132
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.33 E-value=2.9e-12 Score=104.95 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=64.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH---HHhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH---QIAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~---qi~~a~iivlNK~ 196 (293)
+..+.++|+||......+... ....++++++|+|++........... +..... ....|.++|.||+
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~--------~~~~a~~ii~V~D~s~~~s~~~~~~~---l~~l~~~~~~~~~piliv~NK~ 110 (167)
T cd04161 42 KYEVCIFDLGGGANFRGIWVN--------YYAEAHGLVFVVDSSDDDRVQEVKEI---LRELLQHPRVSGKPILVLANKQ 110 (167)
T ss_pred CEEEEEEECCCcHHHHHHHHH--------HHcCCCEEEEEEECCchhHHHHHHHH---HHHHHcCccccCCcEEEEEeCC
Confidence 356789999997554443322 12467899999999865322111000 011111 1245789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc------chhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA------THVTRLEGLLE 256 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~------~~~~~l~~~l~ 256 (293)
|+.+... ...+.+.+. +. .+.. ..-..-.++.+||++| .|+.+...||.
T Consensus 111 Dl~~~~~----~~~i~~~~~-l~---~~~~---~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 111 DKKNALL----GADVIEYLS-LE---KLVN---ENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCcCCCC----HHHHHHhcC-cc---cccC---CCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 9876431 233333321 10 1100 0001135678999998 78999889985
No 133
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.33 E-value=1.6e-12 Score=110.43 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=60.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D 197 (293)
.+..+.|+||||..+.. . ........+|.+++|+|+.......... ..........+ .++|+||+|
T Consensus 75 ~~~~~~liDTpG~~~~~---~-----~~~~~~~~ad~~llVvD~~~~~~~~~~~-----~~~~~~~~~~~~iIvviNK~D 141 (208)
T cd04166 75 PKRKFIIADTPGHEQYT---R-----NMVTGASTADLAILLVDARKGVLEQTRR-----HSYILSLLGIRHVVVAVNKMD 141 (208)
T ss_pred CCceEEEEECCcHHHHH---H-----HHHHhhhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCCcEEEEEEchh
Confidence 35578999999964321 1 1122346789999999998653222110 12223333434 456899999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
+.+..+ .....+...++.+.... + .+...++++||++|.|+.+.
T Consensus 142 ~~~~~~--~~~~~i~~~~~~~~~~~-------~-~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 142 LVDYSE--EVFEEIVADYLAFAAKL-------G-IEDITFIPISALDGDNVVSR 185 (208)
T ss_pred cccCCH--HHHHHHHHHHHHHHHHc-------C-CCCceEEEEeCCCCCCCccC
Confidence 975431 11223333333221110 0 11234789999999998643
No 134
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.32 E-value=2.6e-11 Score=102.21 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=64.0
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNKV 196 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK~ 196 (293)
.+.|+||||......+.... ....+++++|+|+.+...... ...++.++ ..+.++|.||+
T Consensus 56 ~l~l~D~~G~~~~~~~~~~~--------~~~a~~iilv~D~~~~~s~~~-------~~~~~~~i~~~~~~~piivVgNK~ 120 (199)
T cd04110 56 KLQIWDTAGQERFRTITSTY--------YRGTHGVIVVYDVTNGESFVN-------VKRWLQEIEQNCDDVCKVLVGNKN 120 (199)
T ss_pred EEEEEeCCCchhHHHHHHHH--------hCCCcEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCCEEEEEECc
Confidence 46799999965443333222 134678999999986543221 11222222 24679999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+.... .........+..+ ..++.+|+++|.|++++..++..
T Consensus 121 Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 121 DDPERKVV--ETEDAYKFAGQMG---------------ISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred cccccccc--CHHHHHHHHHHcC---------------CEEEEEECCCCcCHHHHHHHHHH
Confidence 98764321 2233333333322 24678999999999999888754
No 135
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.32 E-value=1.4e-11 Score=100.76 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=64.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
..+.++||+|......+...+ ...+|++|+|+|......... ...++.++ ..|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKFGGLRDGY--------YIGGQCAIIMFDVTSRVTYKN-------VPNWHRDLVRVCGNIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhhccccHHH--------hcCCCEEEEEEECCCHHHHHH-------HHHHHHHHHHhCCCCcEEEEEEc
Confidence 457899999975543222221 145789999999986544321 12222222 4678999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+|+.+... ..+..+..+ .+ ...++.+||++|+|++++..++...
T Consensus 114 ~Dl~~~~~----~~~~~~~~~-~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 114 VDIKDRKV----KAKQITFHR-KK--------------NLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred hhcccccC----CHHHHHHHH-Hc--------------CCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99874321 111111111 11 1346889999999999999988643
No 136
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.32 E-value=1.3e-11 Score=104.15 Aligned_cols=116 Identities=18% Similarity=0.079 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH------HhccCEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ------IAFADVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q------i~~a~iivlN 194 (293)
.++.|+||||...........+..........+|++++|+|+.+....... . .+...+.+ -..|.++|.|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~-~---~~~~~i~~~~~~~~~~~piiivgN 124 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYV-K---LLRQQILETRPAGNKEPPIVVVGN 124 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcccCCCCCCEEEEEE
Confidence 456799999975421111111111112234578999999999875432211 0 01111111 1257899999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
|+|+...... ....+....++.. . -.++.+||++|.|++++...+.
T Consensus 125 K~Dl~~~~~~--~~~~~~~~~~~~~-~-------------~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 125 KRDQQRHRFA--PRHVLSVLVRKSW-K-------------CGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred Cccccccccc--cHHHHHHHHHHhc-C-------------CcEEEecCCCCCCHHHHHHHHH
Confidence 9999654321 1222222222111 0 2468899999999998876554
No 137
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.32 E-value=1.5e-11 Score=100.42 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.++||||.......... ....+|++++|+|+....... ... .+...+.+. ..+.++|.||+|
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~--------~~~~ad~~i~v~d~~~~~s~~-~~~---~~~~~i~~~~~~~~p~iiv~nK~D 119 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTA--------YYRGAMGIILVYDITDEKSFE-NIR---NWMRNIEEHASEDVERMLVGNKCD 119 (167)
T ss_pred EEEEEEeCCchHHHHHHHHH--------HhCCCCEEEEEEECcCHHHHH-hHH---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 35689999996543333221 124678999999987654322 110 112222221 246799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ..++.....+..+ ..++.+|+.++.|++++..++.+
T Consensus 120 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~ 162 (167)
T cd01867 120 MEEKRVV--SKEEGEALADEYG---------------IKFLETSAKANINVEEAFFTLAK 162 (167)
T ss_pred cccccCC--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 9864321 2334444433221 13588999999999998887754
No 138
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.32 E-value=9.1e-12 Score=120.48 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=95.6
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCC-CccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG-EEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g-~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
..|.|+++++|..|+|||||+++|... +++ ..+.+ .+..+....+ ..
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~----~v~--~~e~~GIT~~ig~~~v-------------~~------------- 131 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKT----KVA--QGEAGGITQHIGAYHV-------------EN------------- 131 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC----Ccc--cccCCceeecceEEEE-------------EE-------------
Confidence 458899999999999999999999842 221 11221 1111100000 00
Q ss_pred HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
.+...+.|+||||......... .....+|.+++|+|+.......... ..........
T Consensus 132 ----------~~~~~i~~iDTPGhe~F~~~r~--------rga~~aDiaILVVda~dgv~~qT~e-----~i~~~~~~~v 188 (587)
T TIGR00487 132 ----------EDGKMITFLDTPGHEAFTSMRA--------RGAKVTDIVVLVVAADDGVMPQTIE-----AISHAKAANV 188 (587)
T ss_pred ----------CCCcEEEEEECCCCcchhhHHH--------hhhccCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCC
Confidence 0112578999999765433321 2335678899999987543221110 1222333456
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
|.++++||+|+.+.. .+++...++...-... .++ ....++++||++|+|++++.+++.
T Consensus 189 PiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~----~~~--~~~~~v~iSAktGeGI~eLl~~I~ 246 (587)
T TIGR00487 189 PIIVAINKIDKPEAN-----PDRVKQELSEYGLVPE----DWG--GDTIFVPVSALTGDGIDELLDMIL 246 (587)
T ss_pred CEEEEEECcccccCC-----HHHHHHHHHHhhhhHH----hcC--CCceEEEEECCCCCChHHHHHhhh
Confidence 899999999986532 3455555544321100 000 112578999999999999988874
No 139
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.31 E-value=8.6e-12 Score=101.41 Aligned_cols=104 Identities=17% Similarity=0.125 Sum_probs=61.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
.++.++||+|........... ....|++++|+|++........ ..+...+.+. ..+.++|+||+|+
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~----~~~~~~i~~~~~~~p~ivv~nK~Dl 116 (161)
T cd04124 49 ILVDFWDTAGQERFQTMHASY--------YHKAHACILVFDVTRKITYKNL----SKWYEELREYRPEIPCIVVANKIDL 116 (161)
T ss_pred EEEEEEeCCCchhhhhhhHHH--------hCCCCEEEEEEECCCHHHHHHH----HHHHHHHHHhCCCCcEEEEEECccC
Confidence 456799999976543333222 2467889999999765432221 0122222222 4678999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.... ..+.....+..+ .+++.+|+++|.|++++...+.
T Consensus 117 ~~~~-----~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 117 DPSV-----TQKKFNFAEKHN---------------LPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred chhH-----HHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHH
Confidence 5321 111111111111 2467899999999998877664
No 140
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.31 E-value=1.3e-11 Score=101.93 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=64.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~ 196 (293)
..+.|+||||.......... ....++++++|+|..+........ .+...+.+. ..+.++|.||+
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~----~~~~~i~~~~~~~~~piiiv~nK~ 130 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTA--------FFRDAMGFLLIFDLTNEQSFLNVR----NWMSQLQTHAYCENPDIVLCGNKA 130 (180)
T ss_pred EEEEEEeCCChHHHHHHHHH--------HhCCCCEEEEEEECCCHHHHHHHH----HHHHHHHHhcCCCCCcEEEEEeCc
Confidence 45789999996543333222 124678899999998654332210 011112221 34679999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+.... ..++.....+..+ -.++.+|+++|.|++++..++.+
T Consensus 131 Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 131 DLEDQRQV--SEEQAKALADKYG---------------IPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred cchhcCcc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 99764321 2233333333321 13578999999999999888753
No 141
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.31 E-value=8.8e-12 Score=103.65 Aligned_cols=112 Identities=18% Similarity=0.105 Sum_probs=64.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.++||+|..........+ ...+|++|+|+|+++......... .+...+.. -..+.++|.||.|
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~--------~~~ad~iI~v~D~t~~~s~~~~~~---~l~~~~~~~~~~~~piilv~NK~D 129 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHY--------YQNTNGLIFVVDSNDRERIGDARE---ELERMLSEDELRDAVLLVFANKQD 129 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHHHHHHHHH---HHHHHHhCHhhcCCCEEEEEeCCC
Confidence 457899999976544433322 246788999999976432211110 01111111 1246789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+.. ...++...+... .. ... ...++.+||++|.|++++..|+.+
T Consensus 130 l~~~~----~~~~i~~~l~~~--~~-----~~~---~~~~~~~Sa~tg~gv~e~~~~l~~ 175 (182)
T PTZ00133 130 LPNAM----STTEVTEKLGLH--SV-----RQR---NWYIQGCCATTAQGLYEGLDWLSA 175 (182)
T ss_pred CCCCC----CHHHHHHHhCCC--cc-----cCC---cEEEEeeeCCCCCCHHHHHHHHHH
Confidence 86532 123333333210 00 000 113568899999999999999865
No 142
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.30 E-value=1.4e-11 Score=103.06 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=62.6
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV 199 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~~ 199 (293)
.+.|+||+|..........+ ....|.+++|+|.......... . .+...+.+. ..|.++|.||+|+.
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~--------~~~~d~iilv~d~~~~~s~~~~-~---~~~~~i~~~~~~~piilv~nK~Dl~ 118 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIY--------YRGAKAAIVCYDLTDSSSFERA-K---FWVKELQNLEEHCKIYLCGTKSDLI 118 (193)
T ss_pred EEEEEECCCchhhhhhhHhh--------cCCCCEEEEEEECCCHHHHHHH-H---HHHHHHHhcCCCCCEEEEEEccccc
Confidence 35689999975433222211 1357889999999765432111 0 012222222 35789999999987
Q ss_pred CCCCC--cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 200 SPERS--GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 200 ~~~~~--~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+..+. ......+.+..+..+ ..++.+|+++|+|++++.+++.+
T Consensus 119 ~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~i~~ 163 (193)
T cd04118 119 EQDRSLRQVDFHDVQDFADEIK---------------AQHFETSSKTGQNVDELFQKVAE 163 (193)
T ss_pred ccccccCccCHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence 54311 011122222222111 23678999999999999988865
No 143
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.30 E-value=4.1e-12 Score=111.98 Aligned_cols=162 Identities=22% Similarity=0.247 Sum_probs=96.6
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
|.++|+||||||||++.+..+. .-|-...|.+ ....--.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~Ak----PKIadYpFTT-L~PnLGvV----------------------------------- 201 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAK----PKIADYPFTT-LVPNLGVV----------------------------------- 201 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcC----CcccCCcccc-ccCcccEE-----------------------------------
Confidence 7899999999999999999653 2233333332 10000000
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHH--HHhhh----cccCCchHHHHHHhcc
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKY----RHLSSYPEAIHQIAFA 188 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~--~~~~~----~~~~~~~~~~~qi~~a 188 (293)
.......+++-|-||+.+-++....+- ...+++..++.++++|||.+.... +.... .++..|. ..-.+++
T Consensus 202 -~~~~~~sfv~ADIPGLIEGAs~G~GLG-~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~--~~L~~K~ 277 (369)
T COG0536 202 -RVDGGESFVVADIPGLIEGASEGVGLG-LRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS--PKLAEKP 277 (369)
T ss_pred -EecCCCcEEEecCcccccccccCCCcc-HHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh--HHhccCc
Confidence 001334589999999887655543332 455788889999999999875431 11111 1111111 1223568
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
-+||+||+|+..++ +.++.+.+.+...... .....+|+.+++|++.|...+.
T Consensus 278 ~ivv~NKiD~~~~~---e~~~~~~~~l~~~~~~-------------~~~~~ISa~t~~g~~~L~~~~~ 329 (369)
T COG0536 278 RIVVLNKIDLPLDE---EELEELKKALAEALGW-------------EVFYLISALTREGLDELLRALA 329 (369)
T ss_pred eEEEEeccCCCcCH---HHHHHHHHHHHHhcCC-------------CcceeeehhcccCHHHHHHHHH
Confidence 89999999976554 2456666666543221 1112299999999987775553
No 144
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.30 E-value=1.8e-11 Score=102.42 Aligned_cols=107 Identities=18% Similarity=0.122 Sum_probs=63.2
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEeC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILNK 195 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlNK 195 (293)
.+.|+||||......+...+ ....|++++|+|.++....... . .+...+... ..|.++|.||
T Consensus 48 ~l~i~Dt~G~~~~~~~~~~~--------~~~ad~~ilv~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~~~piilvgNK 115 (190)
T cd04144 48 MLEVLDTAGQEEYTALRDQW--------IREGEGFILVYSITSRSTFERV-E---RFREQIQRVKDESAADVPIMIVGNK 115 (190)
T ss_pred EEEEEECCCchhhHHHHHHH--------HHhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHHhcccCCCCCEEEEEEC
Confidence 46789999975544333221 2457889999998765432211 0 011112111 2477889999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+...... .........+.++ ..++.+||++|.|++++..++.+
T Consensus 116 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 116 CDKVYEREV--STEEGAALARRLG---------------CEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred hhccccCcc--CHHHHHHHHHHhC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence 999754321 1222222222221 13578999999999999888764
No 145
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.29 E-value=7.3e-12 Score=121.94 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=69.0
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVS 200 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D~~~ 200 (293)
.+.||||||... +. ..+......+|.+++|+|+.......... ....+..++.+. ++|+||+|+++
T Consensus 52 ~i~~IDtPGhe~---fi-----~~m~~g~~~~D~~lLVVda~eg~~~qT~e-----hl~il~~lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 52 VLGFIDVPGHEK---FL-----SNMLAGVGGIDHALLVVACDDGVMAQTRE-----HLAILQLTGNPMLTVALTKADRVD 118 (614)
T ss_pred EEEEEECCCHHH---HH-----HHHHHHhhcCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCeEEEEEECCccCC
Confidence 367999999632 11 22234456789999999998654332211 233445555564 68999999986
Q ss_pred CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+. ...+...++...... .+...+++++|+++|+|++.|.+++.+.
T Consensus 119 ~~~----~~~v~~ei~~~l~~~--------~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 119 EAR----IAEVRRQVKAVLREY--------GFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred HHH----HHHHHHHHHHHHHhc--------CCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 432 233333333221110 0112458899999999999999998754
No 146
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.29 E-value=2.9e-11 Score=98.61 Aligned_cols=108 Identities=18% Similarity=0.088 Sum_probs=63.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEEe
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVILN 194 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivlN 194 (293)
..+.++||||......+.... ....+.+++|+|..+....... . .+.+.+.+. ..|.++|.|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~~-~---~~~~~i~~~~~~~~~~~piilv~n 116 (165)
T cd04140 49 CTLQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSVTSKQSLEEL-K---PIYELICEIKGNNIEKIPIMLVGN 116 (165)
T ss_pred EEEEEEECCCCCcchHHHHHH--------hhcCCEEEEEEECCCHHHHHHH-H---HHHHHHHHHhcCCCCCCCEEEEEE
Confidence 456799999986544333211 2356788999998765432211 0 022223332 357899999
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+|+.+..+. .........+..+ ..++.+||++|+|++++..|+..
T Consensus 117 K~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 117 KCDESHKREV--SSNEGAACATEWN---------------CAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CccccccCee--cHHHHHHHHHHhC---------------CcEEEeecCCCCCHHHHHHHHHh
Confidence 9999763321 1122222222111 24678999999999999888753
No 147
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.29 E-value=1e-11 Score=100.04 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH---HhccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---IAFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---i~~a~iivlNK~D 197 (293)
..+.++|+||........... ....+.+++|+|..+....... ... +...... ...+.++++||+|
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~~~~-~~~--~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLY--------IRQGDGFILVYSITDRESFEEI-KGY--REQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEEEEECCChHHHHHHHHHH--------HhcCCEEEEEEECCCHHHHHHH-HHH--HHHHHHhcCCCCCcEEEEEECCc
Confidence 456799999966543333221 2356889999998764432111 000 1111111 2467899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+... ...+.+....+..+ ..++.+|+.++.|++++..++..
T Consensus 116 ~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 116 LENERQ--VSKEEGKALAKEWG---------------CPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred ccccce--ecHHHHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHh
Confidence 986432 23344444444332 24678999999999999888753
No 148
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.29 E-value=1.3e-11 Score=122.27 Aligned_cols=162 Identities=17% Similarity=0.168 Sum_probs=96.4
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..|.|+|+|+|..|+|||||+++|... ++ ...+.+. ++.. .|...+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~----~v--~~~e~~G---IT~~------------------iga~~v~------ 333 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT----NV--AAGEAGG---ITQH------------------IGAYQVE------ 333 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC----Cc--cccccCc---eeee------------------ccEEEEE------
Confidence 568999999999999999999999742 22 1122221 1110 0111110
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
..+..+.|+||||......... .....+|.+|+|+|+.......... ..........+
T Consensus 334 ---------~~~~~ItfiDTPGhe~F~~m~~--------rga~~aDiaILVVdAddGv~~qT~e-----~i~~a~~~~vP 391 (787)
T PRK05306 334 ---------TNGGKITFLDTPGHEAFTAMRA--------RGAQVTDIVVLVVAADDGVMPQTIE-----AINHAKAAGVP 391 (787)
T ss_pred ---------ECCEEEEEEECCCCccchhHHH--------hhhhhCCEEEEEEECCCCCCHhHHH-----HHHHHHhcCCc
Confidence 1234578999999765433331 2235678999999997643222110 12223344578
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.++++||+|+.+.. ...+...+....- +...++ ....++++||++|+|+++|.+++.
T Consensus 392 iIVviNKiDl~~a~-----~e~V~~eL~~~~~----~~e~~g--~~vp~vpvSAktG~GI~eLle~I~ 448 (787)
T PRK05306 392 IIVAINKIDKPGAN-----PDRVKQELSEYGL----VPEEWG--GDTIFVPVSAKTGEGIDELLEAIL 448 (787)
T ss_pred EEEEEECccccccC-----HHHHHHHHHHhcc----cHHHhC--CCceEEEEeCCCCCCchHHHHhhh
Confidence 99999999996542 3444444443211 100011 113578999999999999988875
No 149
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.28 E-value=2.9e-11 Score=99.26 Aligned_cols=107 Identities=14% Similarity=0.022 Sum_probs=62.3
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~D 197 (293)
.+.+.|++|.......... ....+|++++|+|++....... ...+..++ ..|.++|+||+|
T Consensus 55 ~l~~~d~~g~~~~~~~~~~--------~~~~~d~~llv~d~~~~~s~~~-------~~~~~~~~~~~~~~p~iiv~NK~D 119 (169)
T cd01892 55 YLILREVGEDEVAILLNDA--------ELAACDVACLVYDSSDPKSFSY-------CAEVYKKYFMLGEIPCLFVAAKAD 119 (169)
T ss_pred EEEEEecCCcccccccchh--------hhhcCCEEEEEEeCCCHHHHHH-------HHHHHHHhccCCCCeEEEEEEccc
Confidence 4678899986543221111 1257899999999976543211 12233332 468899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
+.+..+. ......+..+.+ ....++.+||.+|+|++++...+.+..
T Consensus 120 l~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 120 LDEQQQR--YEVQPDEFCRKL--------------GLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred ccccccc--cccCHHHHHHHc--------------CCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 8654311 011111111211 122357899999999998888776543
No 150
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.28 E-value=1.1e-11 Score=101.28 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=64.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.++||||..+....... .....+++++++|..+......... .+...+.+. ..|.++|.||+|+
T Consensus 48 ~~l~~~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~p~ivv~nK~Dl 116 (171)
T cd00157 48 VNLGLWDTAGQEEYDRLRPL--------SYPNTDVFLICFSVDSPSSFENVKT---KWIPEIRHYCPNVPIILVGTKIDL 116 (171)
T ss_pred EEEEEEeCCCcccccccchh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEEccHHh
Confidence 45789999997654222111 1146789999999987443222110 011122221 3678999999998
Q ss_pred CCCCCCc---------chHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 199 VSPERSG---------DSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 199 ~~~~~~~---------~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+..... .......+..... ....++.+|+.+|.|++++..++.
T Consensus 117 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 117 RDDENTLKKLEKGKEPITPEEGEKLAKEI--------------GAIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred hhchhhhhhcccCCCccCHHHHHHHHHHh--------------CCeEEEEeecCCCCCHHHHHHHHh
Confidence 8654210 0111222222222 123578899999999999987764
No 151
>PTZ00369 Ras-like protein; Provisional
Probab=99.28 E-value=3.5e-11 Score=100.58 Aligned_cols=107 Identities=17% Similarity=0.094 Sum_probs=64.3
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~D 197 (293)
.+-|+||||..+...+...+. ...+++++|+|.++...... .. .+...+.+. ..|.++|.||+|
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~--------~~~d~iilv~D~s~~~s~~~-~~---~~~~~i~~~~~~~~~piiiv~nK~D 121 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYM--------RTGQGFLCVYSITSRSSFEE-IA---SFREQILRVKDKDRVPMILVGNKCD 121 (189)
T ss_pred EEEEEeCCCCccchhhHHHHh--------hcCCEEEEEEECCCHHHHHH-HH---HHHHHHHHhcCCCCCCEEEEEECcc
Confidence 356899999877655443221 35788999999987543211 10 011122111 346799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+.... .........+..+ .+++.+||++|.|++++..|+.+
T Consensus 122 l~~~~~i--~~~~~~~~~~~~~---------------~~~~e~Sak~~~gi~~~~~~l~~ 164 (189)
T PTZ00369 122 LDSERQV--STGEGQELAKSFG---------------IPFLETSAKQRVNVDEAFYELVR 164 (189)
T ss_pred ccccccc--CHHHHHHHHHHhC---------------CEEEEeeCCCCCCHHHHHHHHHH
Confidence 8654321 1222223222221 23678999999999998888754
No 152
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.27 E-value=2.8e-11 Score=106.68 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=72.7
Q ss_pred EEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
|+++|.+|+|||||+++|+.... -.+.+.+.. |+ ...|...... ..+ +.+..+..+|.
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~--~~-~~~D~~~~E~-~rg------iti~~~~~~~~----------- 60 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRIHKIGEVHG--GG-ATMDFMEQER-ERG------ITIQSAATTCF----------- 60 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCcccccccC--Cc-cccCCCcccc-CCC------cCeeccEEEEE-----------
Confidence 67999999999999999985310 112222221 11 1112111110 001 11111112111
Q ss_pred HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEE
Q 022736 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVIL 193 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivl 193 (293)
..+.++.+|||||..+.... .......+|.+++|+|+.......... ......+...|.++++
T Consensus 61 ----~~~~~i~liDTPG~~df~~~--------~~~~l~~aD~ailVVDa~~g~~~~t~~-----~~~~~~~~~~p~ivvi 123 (270)
T cd01886 61 ----WKDHRINIIDTPGHVDFTIE--------VERSLRVLDGAVAVFDAVAGVEPQTET-----VWRQADRYNVPRIAFV 123 (270)
T ss_pred ----ECCEEEEEEECCCcHHHHHH--------HHHHHHHcCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEE
Confidence 23567899999997653222 123446678999999998754332211 2334455667899999
Q ss_pred eCCCCCCC
Q 022736 194 NKVDLVSP 201 (293)
Q Consensus 194 NK~D~~~~ 201 (293)
||+|+.+.
T Consensus 124 NK~D~~~a 131 (270)
T cd01886 124 NKMDRTGA 131 (270)
T ss_pred ECCCCCCC
Confidence 99998764
No 153
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.27 E-value=1.2e-11 Score=100.45 Aligned_cols=107 Identities=21% Similarity=0.127 Sum_probs=62.6
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD 197 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~D 197 (293)
.+.|+||||......+.... ....|++++|+|..+....... . .+...+.+ ...|.++|.||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~--------~~~ad~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~piviv~nK~D 117 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLY--------IKNGQGFIVVYSLVNQQTFQDI-K---PMRDQIVRVKGYEKVPIILVGNKVD 117 (163)
T ss_pred EEEEEECCCcccccchHHHH--------HhhCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCCEEEEEECcc
Confidence 35689999975544443322 1457889999998765432111 0 01222222 2467899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+.... .........+..+ ..++.+||++|.|++++..++..
T Consensus 118 l~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 118 LESEREV--SSAEGRALAEEWG---------------CPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred chhcCcc--CHHHHHHHHHHhC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence 8654321 1122222222111 23578999999999999888753
No 154
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.27 E-value=2.4e-11 Score=102.34 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=64.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
.++.++||||+.+.....+.++ .. ......|.++++.|.. +...... +...+.+...+.++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l-~~--~~~~~~d~~l~v~~~~-~~~~d~~------~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYL-EE--MKFSEYDFFIIISSTR-FSSNDVK------LAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHH-HH--hCccCcCEEEEEeCCC-CCHHHHH------HHHHHHHhCCCEEEEEecccchh
Confidence 4678999999876432222221 11 1124577777776543 3221111 23445555678899999999864
Q ss_pred CCC---------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC--Ccchhhhhhhhhh
Q 022736 201 PER---------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY--DATHVTRLEGLLE 256 (293)
Q Consensus 201 ~~~---------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~--~~~~~~~l~~~l~ 256 (293)
..+ ....+.++++.+....+.. ......+|.+|+. .+.++..|.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~--------~~~~p~v~~vS~~~~~~~~~~~l~~~~~ 180 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEA--------GVSEPPVFLVSNFDPSDYDFPKLRETLL 180 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHc--------CCCCCCEEEEeCCChhhcChHHHHHHHH
Confidence 322 1123444444444333211 1234678899998 4566777766654
No 155
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.27 E-value=3e-11 Score=98.84 Aligned_cols=107 Identities=18% Similarity=0.082 Sum_probs=61.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHHH------HhccCEEEE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQ------IAFADVVIL 193 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~q------i~~a~iivl 193 (293)
..+.|+||||......+.... ....+++++++|..+....... . .+.. .... -..|.++|.
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~~-~---~~~~~~~~~~~~~~~~~~piilv~ 121 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPF--------YRGSDCCLLTFAVDDSQSFQNL-S---NWKKEFIYYADVKEPESFPFVVLG 121 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHH--------hcCCCEEEEEEECCCHHHHHhH-H---HHHHHHHHhcccccCCCCcEEEEE
Confidence 457799999965433333221 1356778888887654321110 0 0111 1110 124779999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
||+|+.+.. ....++.+..+..+. ..++.+||++|.|+.++..++.
T Consensus 122 nK~Dl~~~~---~~~~~~~~~~~~~~~--------------~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 122 NKNDIPERQ---VSTEEAQAWCRENGD--------------YPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred ECccccccc---cCHHHHHHHHHHCCC--------------CeEEEEECCCCCCHHHHHHHHH
Confidence 999986432 233455555544321 2467899999999988877664
No 156
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.26 E-value=2.7e-11 Score=95.78 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=98.6
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
+.+.|..||||||++++|+ +..+-.+++.+|- ++....
T Consensus 19 iLiLGLdNsGKTti~~kl~----~~~~~~i~pt~gf--~Iktl~------------------------------------ 56 (185)
T KOG0073|consen 19 ILILGLDNSGKTTIVKKLL----GEDTDTISPTLGF--QIKTLE------------------------------------ 56 (185)
T ss_pred EEEEecCCCCchhHHHHhc----CCCccccCCccce--eeEEEE------------------------------------
Confidence 5678999999999999999 4444556666553 221110
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 194 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN 194 (293)
...+.+.+.|-.|.....+++.+++ ...|++|+|+|++....-..-...+.....--+-++.+.+++.|
T Consensus 57 ---~~~~~L~iwDvGGq~~lr~~W~nYf--------estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlan 125 (185)
T KOG0073|consen 57 ---YKGYTLNIWDVGGQKTLRSYWKNYF--------ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLAN 125 (185)
T ss_pred ---ecceEEEEEEcCCcchhHHHHHHhh--------hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEe
Confidence 2456789999999988887776654 56789999999976543322211111111111223457899999
Q ss_pred CCCCCCCCCCcchHHHHHHH--HHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKE--IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~--l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|.|+..+- ..+.+... |..+.+.. -.+++.+|+.+|+++.+-.+|+..
T Consensus 126 k~dl~~~l----~~~~i~~~~~L~~l~ks~-----------~~~l~~cs~~tge~l~~gidWL~~ 175 (185)
T KOG0073|consen 126 KQDLPGAL----SLEEISKALDLEELAKSH-----------HWRLVKCSAVTGEDLLEGIDWLCD 175 (185)
T ss_pred cCcCcccc----CHHHHHHhhCHHHhcccc-----------CceEEEEeccccccHHHHHHHHHH
Confidence 99987543 23444422 23332221 146788999999888877888754
No 157
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.26 E-value=3e-11 Score=98.63 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVD 197 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D 197 (293)
..++.++||||..+...... ......|.+++|+|..+......... .+...+.+. ..+.++|.||+|
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~--------~~~~~ad~~ilv~d~~~~~s~~~~~~---~~~~~i~~~~~~~pviiv~nK~D 114 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLA--------AEIRKANVICLVYSVDRPSTLERIRT---KWLPLIRRLGVKVPIILVGNKSD 114 (166)
T ss_pred eEEEEEEeCCCchhhhHHHh--------hhcccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEchh
Confidence 35678999999765333221 11256788999999876443221000 011112211 457899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..........+....+..+. ...++.+||+++.|++++...+.+
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 115 LRDGSSQAGLEEEMLPIMNEFRE-------------IETCVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred cccccchhHHHHHHHHHHHHHhc-------------ccEEEEeccccccCHHHHHHHHHH
Confidence 97654210001111111222211 124678999999999988776654
No 158
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.26 E-value=2e-11 Score=118.35 Aligned_cols=133 Identities=21% Similarity=0.210 Sum_probs=70.3
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC-ccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~-~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
..|.|+++++|..|+|||||+++|... .+...++|. +..+....+... ..+-..| ..
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~------~v~~~~~g~itq~ig~~~~~~~--------~~~~~~~--------~~ 60 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGT------AVAAKEAGGITQHIGATEVPID--------VIEKIAG--------PL 60 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCc------ccccCCCCceEEeeceeecccc--------ccccccc--------ee
Confidence 458999999999999999999999732 222333332 000000000000 0000000 00
Q ss_pred HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
... +-....-+.+.|+||||......... ......|.+++|+|+.......... ....+.....
T Consensus 61 ~~~---~~~~~~~~~i~~iDTPG~e~f~~~~~--------~~~~~aD~~IlVvDa~~g~~~qt~e-----~i~~~~~~~v 124 (586)
T PRK04004 61 KKP---LPIKLKIPGLLFIDTPGHEAFTNLRK--------RGGALADIAILVVDINEGFQPQTIE-----AINILKRRKT 124 (586)
T ss_pred ccc---cccccccCCEEEEECCChHHHHHHHH--------HhHhhCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCC
Confidence 000 00000112478999999765433321 1224678999999998642221110 1223344567
Q ss_pred cCEEEEeCCCCC
Q 022736 188 ADVVILNKVDLV 199 (293)
Q Consensus 188 a~iivlNK~D~~ 199 (293)
+.++++||+|+.
T Consensus 125 piIvviNK~D~~ 136 (586)
T PRK04004 125 PFVVAANKIDRI 136 (586)
T ss_pred CEEEEEECcCCc
Confidence 889999999986
No 159
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.26 E-value=3.7e-11 Score=100.17 Aligned_cols=108 Identities=15% Similarity=0.134 Sum_probs=62.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.++||+|.......... ....++++++|+|..+...... ... +...+.+. ..+.+++.||+|
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~--------~~~~~d~iilv~d~~~~~s~~~-i~~---~~~~i~~~~~~~~~~ivv~nK~D 116 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNS--------YYRGAHGYLLVYDVTDQESFEN-LKF---WINEINRYARENVIKVIVANKSD 116 (188)
T ss_pred EEEEEEECCCcHHHHhhHHH--------HccCCCEEEEEEECcCHHHHHH-HHH---HHHHHHHhCCCCCeEEEEEECCC
Confidence 34679999996543322221 1246789999999986543221 110 11222222 135688999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+.... .........+.. . -.++.+|++++.|++++..++.+
T Consensus 117 l~~~~~v--~~~~~~~~~~~~--------------~-~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 117 LVNNKVV--DSNIAKSFCDSL--------------N-IPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred CcccccC--CHHHHHHHHHHc--------------C-CeEEEEeCCCCCCHHHHHHHHHH
Confidence 8754321 122222222211 1 14678999999999988877754
No 160
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.26 E-value=2.2e-11 Score=118.10 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=68.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLV 199 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~~ 199 (293)
..+.||||||.... . ..+......+|.+++|+|+......... +....+...+.+ .++++||+|++
T Consensus 50 ~~v~~iDtPGhe~f---~-----~~~~~g~~~aD~aILVVDa~~G~~~qT~-----ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 50 YRLGFIDVPGHEKF---I-----SNAIAGGGGIDAALLVVDADEGVMTQTG-----EHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEEEEECCCHHHH---H-----HHHHhhhccCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEECCCCC
Confidence 45789999995321 1 2223445678999999999864322111 123344555667 89999999998
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+......+++.+.++...- ....+++++|+++|+|++++..++..
T Consensus 117 ~~~~~~~~~~ei~~~l~~~~~-----------~~~~~ii~vSA~tG~GI~eL~~~L~~ 163 (581)
T TIGR00475 117 NEEEIKRTEMFMKQILNSYIF-----------LKNAKIFKTSAKTGQGIGELKKELKN 163 (581)
T ss_pred CHHHHHHHHHHHHHHHHHhCC-----------CCCCcEEEEeCCCCCCchhHHHHHHH
Confidence 754210112233333332210 01246789999999999988877754
No 161
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.25 E-value=2.2e-11 Score=100.23 Aligned_cols=108 Identities=17% Similarity=0.092 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~ 196 (293)
..+.|+||+|..+...+....+ ...+++++|+|..+........ .+...+.+. ..|.++|.||+
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~--------~~~d~~ilv~d~~~~~Sf~~~~----~~~~~i~~~~~~~~~piilvgNK~ 117 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYM--------RCGEGFIICYSVTDRHSFQEAS----EFKKLITRVRLTEDIPLVLVGNKV 117 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHh--------hcCCEEEEEEECCchhHHHHHH----HHHHHHHHhcCCCCCCEEEEEECh
Confidence 3467999999766544443221 3568899999987654432211 012222222 35789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|+.+..+. ..++..+..+..+ ..++.+||++|.|++++..|+..
T Consensus 118 Dl~~~~~v--~~~~~~~~a~~~~---------------~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 118 DLESQRQV--TTEEGRNLAREFN---------------CPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred hhhhcCcc--CHHHHHHHHHHhC---------------CEEEEEecCCCCCHHHHHHHHHH
Confidence 98654322 2233333333221 24678999999999999888854
No 162
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.25 E-value=1.9e-11 Score=120.13 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=96.2
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCC-CccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG-EEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g-~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
..+.|+|+|+|..|+|||||+++|.... ++. .+.+ .+..+....+. +.
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~----~~~--~e~~GiTq~i~~~~v~-------------~~------------ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQ----IAQ--KEAGGITQKIGAYEVE-------------FE------------ 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhcc----Ccc--ccCCccccccceEEEE-------------EE------------
Confidence 4589999999999999999999998431 111 1111 10000000000 00
Q ss_pred HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
....+..+.|+||||........ ......+|.+++|+|+......... .....+.....
T Consensus 290 --------~~~~~~kItfiDTPGhe~F~~mr--------~rg~~~aDiaILVVDA~dGv~~QT~-----E~I~~~k~~~i 348 (742)
T CHL00189 290 --------YKDENQKIVFLDTPGHEAFSSMR--------SRGANVTDIAILIIAADDGVKPQTI-----EAINYIQAANV 348 (742)
T ss_pred --------ecCCceEEEEEECCcHHHHHHHH--------HHHHHHCCEEEEEEECcCCCChhhH-----HHHHHHHhcCc
Confidence 00123568899999964332222 1233568899999999764322111 01222334456
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|.++++||+|+.+.. ..++...++..... ....+ ...+++++||++|.|+++|.+++..
T Consensus 349 PiIVViNKiDl~~~~-----~e~v~~eL~~~~ll----~e~~g--~~vpvv~VSAktG~GIdeLle~I~~ 407 (742)
T CHL00189 349 PIIVAINKIDKANAN-----TERIKQQLAKYNLI----PEKWG--GDTPMIPISASQGTNIDKLLETILL 407 (742)
T ss_pred eEEEEEECCCccccC-----HHHHHHHHHHhccc----hHhhC--CCceEEEEECCCCCCHHHHHHhhhh
Confidence 889999999997642 34555555433110 00011 1235789999999999999888754
No 163
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.25 E-value=2.4e-11 Score=99.40 Aligned_cols=108 Identities=15% Similarity=0.046 Sum_probs=62.5
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKVD 197 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~D 197 (293)
.+.++||||......+.+... ...+.+++|+|..+........ .+...+.+ -..|.+++.||+|
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~vlv~~~~~~~s~~~~~----~~~~~i~~~~~~~~~piiiv~nK~D 117 (168)
T cd04177 50 DLEILDTAGTEQFTAMRELYI--------KSGQGFLLVYSVTSEASLNELG----ELREQVLRIKDSDNVPMVLVGNKAD 117 (168)
T ss_pred EEEEEeCCCcccchhhhHHHH--------hhCCEEEEEEECCCHHHHHHHH----HHHHHHHHhhCCCCCCEEEEEEChh
Confidence 467999999766544443221 3467788899887643322110 01222222 1356789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+.... ..+...+..+..+ ...++.+||+++.|++++..++..
T Consensus 118 ~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 118 LEDDRQV--SREDGVSLSQQWG--------------NVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred ccccCcc--CHHHHHHHHHHcC--------------CceEEEeeCCCCCCHHHHHHHHHH
Confidence 8754321 2222222222211 124678999999999988887753
No 164
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.25 E-value=1e-10 Score=97.31 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=63.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
..+.|+||||......+... ....+|++++|+|.++........ ..+...+ ..|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~ii~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~piilv~nK 114 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPL--------SYPDVDVLLICYAVDNPTSLDNVE------DKWFPEVNHFCPGTPIMLVGLK 114 (187)
T ss_pred EEEEEEECCCchhHHHHHHH--------hCCCCCEEEEEEECCCHHHHHHHH------HHHHHHHHHhCCCCCEEEEEeC
Confidence 35679999996543332221 124678999999998654322110 0122111 3578999999
Q ss_pred CCCCCCCCC--cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERS--GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~--~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+.+.... .....+..+..+..+ ...++.+|+++|.|++++..++..
T Consensus 115 ~Dl~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~f~~l~~ 164 (187)
T cd04132 115 TDLRKDKNLDRKVTPAQAESVAKKQG--------------AFAYLECSAKTMENVEEVFDTAIE 164 (187)
T ss_pred hhhhhCccccCCcCHHHHHHHHHHcC--------------CcEEEEccCCCCCCHHHHHHHHHH
Confidence 998753210 011233333333221 124688999999999988877754
No 165
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.25 E-value=2.2e-11 Score=102.56 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=63.5
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHH---HHhccCEEEEeCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIH---QIAFADVVILNKVD 197 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~---qi~~a~iivlNK~D 197 (293)
.+.|+||||......+... ....+|++++|+|+.......... . +.. +.. ....|.++|+||+|
T Consensus 48 ~l~i~D~~G~~~~~~~~~~--------~~~~ad~vilv~d~~~~~s~~~~~-~---~~~~i~~~~~~~~~piilv~NK~D 115 (198)
T cd04147 48 TLDILDTSGSYSFPAMRKL--------SIQNSDAFALVYAVDDPESFEEVE-R---LREEILEVKEDKFVPIVVVGNKAD 115 (198)
T ss_pred EEEEEECCCchhhhHHHHH--------HhhcCCEEEEEEECCCHHHHHHHH-H---HHHHHHHhcCCCCCcEEEEEEccc
Confidence 4679999997654333221 124678999999997654322110 0 111 111 12468899999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+.+.. .......+... .... ..++.+|+++|.|++++.+++...
T Consensus 116 l~~~~~~-v~~~~~~~~~~-~~~~-------------~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 116 SLEEERQ-VPAKDALSTVE-LDWN-------------CGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred ccccccc-ccHHHHHHHHH-hhcC-------------CcEEEecCCCCCCHHHHHHHHHHH
Confidence 8764211 11112221111 1100 235779999999999999888653
No 166
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.25 E-value=5.4e-11 Score=100.55 Aligned_cols=109 Identities=18% Similarity=0.117 Sum_probs=65.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
.++.|+||+|......+...+. ..++++|+|+|.++....... . .+...+.+. ..+.++|.||+|
T Consensus 49 v~l~iwDtaGqe~~~~l~~~y~--------~~ad~iIlVfDvtd~~Sf~~l-~---~w~~~i~~~~~~~~piilVgNK~D 116 (202)
T cd04120 49 IRLQIWDTAGQERFNSITSAYY--------RSAKGIILVYDITKKETFDDL-P---KWMKMIDKYASEDAELLLVGNKLD 116 (202)
T ss_pred EEEEEEeCCCchhhHHHHHHHh--------cCCCEEEEEEECcCHHHHHHH-H---HHHHHHHHhCCCCCcEEEEEECcc
Confidence 4578999999765544443222 467889999999876543221 1 122223322 246789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..+. ......+..+.+. . ..++.+||++|.|++++..|+..
T Consensus 117 L~~~~~v--~~~~~~~~a~~~~-~-------------~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 117 CETDREI--SRQQGEKFAQQIT-G-------------MRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ccccccc--CHHHHHHHHHhcC-C-------------CEEEEecCCCCCCHHHHHHHHHH
Confidence 8754332 2222222222211 0 23678999999999988877753
No 167
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.24 E-value=1.2e-10 Score=93.60 Aligned_cols=141 Identities=23% Similarity=0.287 Sum_probs=79.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCC--Ccch---hhhhhccCcceeeccchh
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEG--GALV---EEWVELANGCICCTVKHS 106 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~--~~~~---~~~~~l~~gcicc~~~~~ 106 (293)
++.++|+.||||||++..+... ..+.++.++..|++.... ....+..... .... -....++.|+.+-.....
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFS-GGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRA 79 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCc-ccchhcCceEhhheecCCCceEEEcCCcCcccccchh
Confidence 3788999999999999999774 568899999999875221 1111111000 0000 001112222222222222
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
..+.+ +.+. ..++|++||||+|..... .. .....|.++.++.++....+ .........
T Consensus 80 ~~~~~-~~~~-~~~~D~iiIDtaG~~~~~--~~---------~~~~Ad~~ivv~tpe~~D~y---------~~~k~~~~~ 137 (148)
T cd03114 80 TPEVI-RVLD-AAGFDVIIVETVGVGQSE--VD---------IASMADTTVVVMAPGAGDDI---------QAIKAGIME 137 (148)
T ss_pred HHHHH-HHHH-hcCCCEEEEECCccChhh--hh---------HHHhCCEEEEEECCCchhHH---------HHhhhhHhh
Confidence 33333 3333 257999999999976332 11 11345667787777622221 112234556
Q ss_pred ccCEEEEeCCC
Q 022736 187 FADVVILNKVD 197 (293)
Q Consensus 187 ~a~iivlNK~D 197 (293)
.||++++||+|
T Consensus 138 ~~~~~~~~k~~ 148 (148)
T cd03114 138 IADIVVVNKAD 148 (148)
T ss_pred hcCEEEEeCCC
Confidence 79999999997
No 168
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=99.23 E-value=1.2e-11 Score=101.96 Aligned_cols=161 Identities=17% Similarity=0.272 Sum_probs=95.7
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCcc-----ccc-hhhhhcCCCCcchhhhhhccCcceeeccchh
Q 022736 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEI-----GVE-RAMINEGEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~-----~~d-~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
..+.|+.||||||+.+.+.++ ..|+...+|+.||..+. .+| |++++- +.+.++-..--++|-+.|- +.
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsv--dDVmEdl~~GPNGgLv~cm--Ey 81 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISV--DDVMEDLDLGPNGGLVYCM--EY 81 (273)
T ss_pred EEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccH--HHHHHHhccCCCccchhHH--HH
Confidence 467999999999999999886 67999999999997622 222 222211 1111111122245555562 12
Q ss_pred HHHHHHHHHhhcC--CCCEEEEecCCCCC---cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736 107 LVQALEQLVQRKE--RLDHILLETTGLAN---PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (293)
Q Consensus 107 l~~~l~~l~~~~~--~~d~iiidt~G~~~---~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (293)
+.+.+.-+....+ .-+|+++|+||..+ ..+++..+. +..-+..+++ ++++++|+.-..+.....+.-..+..+
T Consensus 82 l~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv-~hl~~~~F~~-c~Vylldsqf~vD~~KfiSG~lsAlsA 159 (273)
T KOG1534|consen 82 LLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIV-EHLKQWNFNV-CVVYLLDSQFLVDSTKFISGCLSALSA 159 (273)
T ss_pred HHHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHH-HHHhcccCce-eEEEEeccchhhhHHHHHHHHHHHHHH
Confidence 3333333333333 56899999999544 445555443 1111223455 578888886444332222222223456
Q ss_pred HHHHhccCEEEEeCCCCCCC
Q 022736 182 IHQIAFADVVILNKVDLVSP 201 (293)
Q Consensus 182 ~~qi~~a~iivlNK~D~~~~ 201 (293)
+.+++.|.+-|++|.|+++.
T Consensus 160 Mi~lE~P~INvlsKMDLlk~ 179 (273)
T KOG1534|consen 160 MISLEVPHINVLSKMDLLKD 179 (273)
T ss_pred HHHhcCcchhhhhHHHHhhh
Confidence 67889999999999999975
No 169
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.23 E-value=1.2e-10 Score=95.76 Aligned_cols=108 Identities=18% Similarity=0.096 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---h----ccCEEEE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---A----FADVVIL 193 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~----~a~iivl 193 (293)
..+.|+||||......+... ....+|.+++|+|+........ ...++.++ . .+.++|.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~~ilv~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~~iilVg 113 (170)
T cd04108 49 FSLQLWDTAGQERFKCIAST--------YYRGAQAIIIVFDLTDVASLEH-------TRQWLEDALKENDPSSVLLFLVG 113 (170)
T ss_pred EEEEEEeCCChHHHHhhHHH--------HhcCCCEEEEEEECcCHHHHHH-------HHHHHHHHHHhcCCCCCeEEEEE
Confidence 35779999997543333322 1246889999999976432211 11222221 1 2358999
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
||+|+.+..+.........+..++++ ..++.+||++|.|++++...+.+.
T Consensus 114 nK~Dl~~~~~~~~~~~~~~~~~~~~~---------------~~~~e~Sa~~g~~v~~lf~~l~~~ 163 (170)
T cd04108 114 TKKDLSSPAQYALMEQDAIKLAAEMQ---------------AEYWSVSALSGENVREFFFRVAAL 163 (170)
T ss_pred EChhcCccccccccHHHHHHHHHHcC---------------CeEEEEECCCCCCHHHHHHHHHHH
Confidence 99998654321001112222222221 235678999999999988777543
No 170
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.23 E-value=1.1e-10 Score=113.41 Aligned_cols=127 Identities=18% Similarity=0.155 Sum_probs=74.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
..+.|+||||..+...... .....+|++++|+|+.......... ..........+.++++||+|+.+
T Consensus 70 ~~l~liDTPG~~dF~~~v~--------~~l~~aD~aILVvDat~g~~~qt~~-----~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVS--------RSLAACEGALLLVDAAQGIEAQTLA-----NVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred EEEEEEECCCcHHHHHHHH--------HHHHhCCEEEEEecCCCCCCHhHHH-----HHHHHHHcCCCEEEEEECcCCCc
Confidence 5678999999876543332 1234678999999998643222110 01111223467899999999865
Q ss_pred CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEe
Q 022736 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSIC 277 (293)
Q Consensus 201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
.. ...+.+.++.... .+..+++.+||++|.|++++.+++.+....|. ...+.+++.+++.
T Consensus 137 ~~-----~~~~~~el~~~lg-----------~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~-~~~~~pl~~~V~~ 196 (595)
T TIGR01393 137 AD-----PERVKKEIEEVIG-----------LDASEAILASAKTGIGIEEILEAIVKRVPPPK-GDPDAPLKALIFD 196 (595)
T ss_pred cC-----HHHHHHHHHHHhC-----------CCcceEEEeeccCCCCHHHHHHHHHHhCCCCC-CCCCCCeEEEEEE
Confidence 32 1233333333221 11235789999999999999998865433232 1233445555543
No 171
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.22 E-value=8.7e-11 Score=96.35 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.++||||......+... .....+++++|+|..+......... .+...+.+. ..|.++|.||+|+
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPL--------SYPDTDVFLICFSVDSPASFENVKE---KWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred EEEEEEECCCCcccchhchh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEecChhh
Confidence 45789999997544332221 1246789999999986543221100 011112211 4678999999998
Q ss_pred CCCCCC----------cchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERS----------GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~----------~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.... ....++..+..+.. ....++.+|+++|.|++++...+..
T Consensus 115 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 115 REDKSTLRELSKQKQEPVTYEQGEALAKRI--------------GAVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred hhChhhhhhhhcccCCCccHHHHHHHHHHc--------------CCcEEEEecCCCCCCHHHHHHHHHH
Confidence 753210 00011111122211 2234678999999999988877653
No 172
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.22 E-value=4.6e-11 Score=102.43 Aligned_cols=108 Identities=11% Similarity=0.028 Sum_probs=63.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNKV 196 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK~ 196 (293)
.++.|+||||... ...... +. ...|++++|+|..+....... . .+...+.+ ...|.++|.||+
T Consensus 50 ~~l~i~Dt~G~~~---~~~~~~----~~--~~ad~iilV~d~td~~S~~~~-~---~~~~~l~~~~~~~~~piilV~NK~ 116 (221)
T cd04148 50 STLVVIDHWEQEM---WTEDSC----MQ--YQGDAFVVVYSVTDRSSFERA-S---ELRIQLRRNRQLEDRPIILVGNKS 116 (221)
T ss_pred EEEEEEeCCCcch---HHHhHH----hh--cCCCEEEEEEECCCHHHHHHH-H---HHHHHHHHhcCCCCCCEEEEEECh
Confidence 4578999999761 111111 10 168899999999876432211 0 01122222 235789999999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+.+..+. ..+...+..... + ..++.+||.++.|++++.+++...
T Consensus 117 Dl~~~~~v--~~~~~~~~a~~~--------------~-~~~~e~SA~~~~gv~~l~~~l~~~ 161 (221)
T cd04148 117 DLARSREV--SVQEGRACAVVF--------------D-CKFIETSAGLQHNVDELLEGIVRQ 161 (221)
T ss_pred hcccccee--cHHHHHHHHHHc--------------C-CeEEEecCCCCCCHHHHHHHHHHH
Confidence 98765421 122222221111 1 235789999999999999888653
No 173
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.22 E-value=1.2e-10 Score=95.14 Aligned_cols=72 Identities=21% Similarity=0.097 Sum_probs=43.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-HhccCEEEEeCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-IAFADVVILNKVDL 198 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-i~~a~iivlNK~D~ 198 (293)
+..+.++||+|......+.... ...+|++++|+|+........... .+...... -..|.++|.||+|+
T Consensus 43 ~~~l~i~Dt~G~~~~~~~~~~~--------~~~ad~ii~V~D~t~~~s~~~~~~---~l~~~~~~~~~~piilv~NK~Dl 111 (164)
T cd04162 43 DAIMELLEIGGSQNLRKYWKRY--------LSGSQGLIFVVDSADSERLPLARQ---ELHQLLQHPPDLPLVVLANKQDL 111 (164)
T ss_pred CeEEEEEECCCCcchhHHHHHH--------HhhCCEEEEEEECCCHHHHHHHHH---HHHHHHhCCCCCcEEEEEeCcCC
Confidence 4567899999976654444322 246788999999987543211100 01111111 23568999999998
Q ss_pred CCCC
Q 022736 199 VSPE 202 (293)
Q Consensus 199 ~~~~ 202 (293)
.++.
T Consensus 112 ~~~~ 115 (164)
T cd04162 112 PAAR 115 (164)
T ss_pred cCCC
Confidence 6543
No 174
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.21 E-value=8.7e-11 Score=100.60 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=63.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
..+.|+||+|......+...+ ....+++|+|+|.++...... ...++.++ ..+.++|.||
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilvfD~~~~~s~~~-------i~~w~~~i~~~~~~~piilvgNK 126 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGY--------YIHGQCAIIMFDVTARLTYKN-------VPTWHRDLCRVCENIPIVLCGNK 126 (219)
T ss_pred EEEEEEECCCchhhhhhhHHH--------cccccEEEEEEeCCCHHHHHH-------HHHHHHHHHHhCCCCcEEEEEEc
Confidence 457899999976654433222 135678999999987654322 11222222 3578999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+.+... ..+.+ ...+. + ...++.+||++|.|++++..|+..
T Consensus 127 ~Dl~~~~v---~~~~~-~~~~~-~--------------~~~~~e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 127 VDVKNRQV---KAKQV-TFHRK-K--------------NLQYYEISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred hhhhhccC---CHHHH-HHHHh-c--------------CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 99864321 11222 11111 0 023578999999999999888864
No 175
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.21 E-value=2.9e-11 Score=113.59 Aligned_cols=111 Identities=14% Similarity=0.264 Sum_probs=60.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc--hHHHHhhhcccCCchHHHHHHhc-cCEEEEeC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIAF-ADVVILNK 195 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~qi~~-a~iivlNK 195 (293)
++..+.|+||||..+... ........+|.+++|+|+.. ....... ........... +.++++||
T Consensus 82 ~~~~i~liDtpG~~~~~~--------~~~~~~~~aD~~ilVvDa~~~~~~~~~~~-----~~~~~~~~~~~~~iivviNK 148 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVK--------NMITGASQADAAVLVVAADDAGGVMPQTR-----EHVFLARTLGINQLIVAINK 148 (425)
T ss_pred CCeEEEEEECCCcccchh--------hHhhchhcCCEEEEEEEcccCCCCCcchH-----HHHHHHHHcCCCeEEEEEEc
Confidence 456789999999643211 11233457899999999975 2211110 01222333343 46889999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR 250 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~ 250 (293)
+|+.+..+ .....+.+.++.+...... ......++++||++|+|+++
T Consensus 149 ~Dl~~~~~--~~~~~~~~~i~~~l~~~g~------~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 149 MDAVNYDE--KRYEEVKEEVSKLLKMVGY------KPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cccccccH--HHHHHHHHHHHHHHHhhCC------CcCcceEEEeecccCCCccc
Confidence 99986321 1122233333322111000 00113578999999999875
No 176
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.21 E-value=1.3e-10 Score=99.39 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=67.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~ 198 (293)
+++.|+||+|......+...+ ...++++|+|+|.+.......... .+...... -..+.++|.||+|+
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~--------~~~ad~~IlV~Dvt~~~Sf~~l~~---~~~~l~~~~~~~~piIlVgNK~DL 112 (220)
T cd04126 44 YNISIWDTAGREQFHGLGSMY--------CRGAAAVILTYDVSNVQSLEELED---RFLGLTDTANEDCLFAVVGNKLDL 112 (220)
T ss_pred EEEEEEeCCCcccchhhHHHH--------hccCCEEEEEEECCCHHHHHHHHH---HHHHHHHhcCCCCcEEEEEECccc
Confidence 457899999976554444322 246889999999987543222100 01111111 12467899999999
Q ss_pred CCCC-----------------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 199 VSPE-----------------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 199 ~~~~-----------------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+.. .+....++.....++++....+.+.... .....++.+||++|+|++++..++.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~-~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 113 TEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSP-AAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred ccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccc-cccceEEEeeCCCCCCHHHHHHHHH
Confidence 7511 1112344444444444321111111111 1112467899999999998876664
No 177
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.21 E-value=2.2e-11 Score=103.76 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=58.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
...+.++||||..+..... ......+|++++|+|+.......... +.........+.++++||+|++
T Consensus 70 ~~~i~iiDtpG~~~f~~~~--------~~~~~~aD~~llVvD~~~~~~~~~~~-----~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEV--------AAALRLSDGVVLVVDVVEGVTSNTER-----LIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEEECCCCcchHHHH--------HHHHHhCCEEEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECcccC
Confidence 3567899999987643222 22335789999999997654322110 1112223347899999999986
Q ss_pred CCCC---CcchHHHHHHHHHhhcCCCEEEE
Q 022736 200 SPER---SGDSLDELEKEIHEINSLAHVIR 226 (293)
Q Consensus 200 ~~~~---~~~~~~~~~~~l~~lnp~a~i~~ 226 (293)
..+. ....+..+.+.++.+|+.+..+.
T Consensus 137 ~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~ 166 (213)
T cd04167 137 ILELKLPPNDAYFKLRHIIDEVNNIIASFS 166 (213)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2110 01245778888888888776554
No 178
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.21 E-value=1.1e-10 Score=95.96 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=61.0
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDLV 199 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~~ 199 (293)
.+.|+||||......+... ....++.+++|+|..+......... .+...+.+. ..+.+++.||+|+.
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~--------~~~~a~~~i~v~d~~~~~sf~~~~~---~~~~~~~~~~~~~piilv~nK~Dl~ 117 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPL--------CYPDTDVFLLCFSVVNPSSFQNISE---KWIPEIRKHNPKAPIILVGTQADLR 117 (173)
T ss_pred EEEEEECCCChhhcccccc--------ccCCCcEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeeChhhc
Confidence 4679999997543222211 2246788999999886543221100 011122221 35779999999987
Q ss_pred CCCC----------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 200 SPER----------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 200 ~~~~----------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+... +....+......+.. ....++.+||++|.|++++.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~--------------~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 118 TDVNVLIQLARYGEKPVSQSRAKALAEKI--------------GACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred cChhHHHHHhhcCCCCcCHHHHHHHHHHh--------------CCCeEEEEeCCCCCCHHHHHHHH
Confidence 5320 001112222222222 12367899999999999887654
No 179
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.20 E-value=1.2e-10 Score=97.47 Aligned_cols=105 Identities=13% Similarity=0.083 Sum_probs=66.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
..+-|+||+|......+...+. ..+|++++|+|.++....... ..++.++ ..+.++|.||
T Consensus 55 ~~l~iwDt~G~~~~~~l~~~~~--------~~ad~illVfD~t~~~Sf~~~-------~~w~~~i~~~~~~~piilVGNK 119 (189)
T cd04121 55 VKLQLWDTSGQGRFCTIFRSYS--------RGAQGIILVYDITNRWSFDGI-------DRWIKEIDEHAPGVPKILVGNR 119 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHh--------cCCCEEEEEEECcCHHHHHHH-------HHHHHHHHHhCCCCCEEEEEEC
Confidence 4567999999865444433221 478899999999875543221 1222222 3467899999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+...... ..++.+...+..+ ..++.+||++|.|++++..++..
T Consensus 120 ~DL~~~~~v--~~~~~~~~a~~~~---------------~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 120 LHLAFKRQV--ATEQAQAYAERNG---------------MTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred ccchhccCC--CHHHHHHHHHHcC---------------CEEEEecCCCCCCHHHHHHHHHH
Confidence 998654321 2344444444322 24678999999999998888764
No 180
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.19 E-value=2e-10 Score=94.73 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=61.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
.++.|+||+|......+... .....+++|+|+|..+......... .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~sf~~~~~---~~~~~~~~~~~~~piilvgnK~Dl 117 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPL--------SYPQTDVFLICFSLVSPASFENVRA---KWYPEVRHHCPNTPIILVGTKLDL 117 (174)
T ss_pred EEEEEEECCCchhhhhhhhh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEeeChhh
Confidence 45779999996543332221 1246789999999987543322100 011111111 3578999999998
Q ss_pred CCCCCCcchHHHH-------------HHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 199 VSPERSGDSLDEL-------------EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 199 ~~~~~~~~~~~~~-------------~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+... ..+++ .+..+.++ ...++.+||++|+|++++...+.
T Consensus 118 ~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 118 RDDKD---TIEKLKEKKLTPITYPQGLAMAKEIG--------------AVKYLECSALTQKGLKTVFDEAI 171 (174)
T ss_pred ccChh---hHHHHhhccCCCCCHHHHHHHHHHcC--------------CcEEEEecccccCCHHHHHHHHH
Confidence 64321 11111 11111111 12567899999999998876654
No 181
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.19 E-value=5.2e-11 Score=101.41 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-------hccCEEEE
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-------AFADVVIL 193 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-------~~a~iivl 193 (293)
..+.++||+|......+... .....+.+++|+|..+...... +..++.++ ..+.++|.
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~--------~~~~~d~iilv~D~~~~~Sf~~-------l~~~~~~i~~~~~~~~~~iilvg 116 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRS--------YYRNSVGVLLVFDITNRESFEH-------VHDWLEEARSHIQPHRPVFILVG 116 (211)
T ss_pred EEEEEEeCCcchhHHHHHHH--------HhcCCcEEEEEEECCCHHHHHH-------HHHHHHHHHHhcCCCCCeEEEEE
Confidence 35779999996543332221 1245788999999987543221 11222221 12347788
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
||+|+.+..+. ..+......+..+ ..++.+|+++|+|++++..++.+
T Consensus 117 NK~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 117 HKCDLESQRQV--TREEAEKLAKDLG---------------MKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred Ecccccccccc--CHHHHHHHHHHhC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 99998764321 2233333333221 23567899999999998888754
No 182
>PRK12736 elongation factor Tu; Reviewed
Probab=99.18 E-value=3.1e-10 Score=105.51 Aligned_cols=115 Identities=23% Similarity=0.226 Sum_probs=65.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~ 198 (293)
+.++.||||||..+ +. .........+|.+++|+|+......... ++.......+.+ .++++||+|+
T Consensus 74 ~~~i~~iDtPGh~~---f~-----~~~~~~~~~~d~~llVvd~~~g~~~~t~-----~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 74 KRHYAHVDCPGHAD---YV-----KNMITGAAQMDGAILVVAATDGPMPQTR-----EHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CcEEEEEECCCHHH---HH-----HHHHHHHhhCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCEEEEEEEecCC
Confidence 45789999999532 22 2223445678999999999864332221 123344555667 4678999999
Q ss_pred CCCCCCcc-hHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc--------hhhhhhhhhhh
Q 022736 199 VSPERSGD-SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT--------HVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~-~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~--------~~~~l~~~l~~ 257 (293)
++.++... ..+++...++.+.-. ....+++++|+++|. ++..|.+.+..
T Consensus 141 ~~~~~~~~~i~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~ 198 (394)
T PRK12736 141 VDDEELLELVEMEVRELLSEYDFP----------GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDE 198 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHhCCC----------cCCccEEEeeccccccCCCcchhhHHHHHHHHHH
Confidence 85442101 112344444433211 012467889999983 34555555544
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.18 E-value=2.6e-10 Score=111.02 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=75.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
...+.||||||..+...... .....+|.+++|+|+.......... ..........+.++|+||+|+.
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~--------~sl~~aD~aILVVDas~gv~~qt~~-----~~~~~~~~~lpiIvViNKiDl~ 139 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVS--------RSLAACEGALLVVDASQGVEAQTLA-----NVYLALENDLEIIPVLNKIDLP 139 (600)
T ss_pred cEEEEEEECCCcHHHHHHHH--------HHHHHCCEEEEEEECCCCCCHHHHH-----HHHHHHHCCCCEEEEEECCCCC
Confidence 35678999999877543322 1234678999999998653322110 1111223356789999999986
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEE
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSI 276 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 276 (293)
+.. ...+.+.++.... ++..+++.+||++|.|+++|.+++.+....|. ...+.+++.+++
T Consensus 140 ~a~-----~~~v~~ei~~~lg-----------~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~-~~~~~pl~~~Vf 199 (600)
T PRK05433 140 AAD-----PERVKQEIEDVIG-----------IDASDAVLVSAKTGIGIEEVLEAIVERIPPPK-GDPDAPLKALIF 199 (600)
T ss_pred ccc-----HHHHHHHHHHHhC-----------CCcceEEEEecCCCCCHHHHHHHHHHhCcccc-CCCCCCceEEEE
Confidence 532 2333333333211 11235789999999999999999865433232 123344554444
No 184
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.18 E-value=1.7e-10 Score=95.96 Aligned_cols=113 Identities=10% Similarity=0.150 Sum_probs=62.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
.++.|+||+|......+... ....++++++|+|.++........ .+...+.+. ..+ ++|.||+|
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~--------~~~~a~~iilv~D~t~~~s~~~i~----~~~~~~~~~~~~~~p-ilVgnK~D 115 (182)
T cd04128 49 ITFSIWDLGGQREFINMLPL--------VCNDAVAILFMFDLTRKSTLNSIK----EWYRQARGFNKTAIP-ILVGTKYD 115 (182)
T ss_pred EEEEEEeCCCchhHHHhhHH--------HCcCCCEEEEEEECcCHHHHHHHH----HHHHHHHHhCCCCCE-EEEEEchh
Confidence 45779999997543333221 224678899999998765432210 011222221 124 78899999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+...... .....+.+..+.+... .. ..++.+||++|.|++++..++...
T Consensus 116 l~~~~~~-~~~~~~~~~~~~~a~~----------~~-~~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 116 LFADLPP-EEQEEITKQARKYAKA----------MK-APLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred ccccccc-hhhhhhHHHHHHHHHH----------cC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 8642110 0001111222221110 01 246789999999999998887643
No 185
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.17 E-value=5.2e-10 Score=96.89 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=46.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
.+.++.++||||..+..... ......+|.+++|+|+......... .+.........|.++++||+|+
T Consensus 62 ~~~~i~liDTPG~~~f~~~~--------~~~l~~aD~~IlVvd~~~g~~~~~~-----~~~~~~~~~~~P~iivvNK~D~ 128 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEV--------ERSLSVLDGAILVISAVEGVQAQTR-----ILWRLLRKLNIPTIIFVNKIDR 128 (237)
T ss_pred CCEEEEEEeCCCccchHHHH--------HHHHHHhCeEEEEEeCCCCCCHHHH-----HHHHHHHHcCCCEEEEEECccc
Confidence 45678999999987643322 1233567899999999865432211 1223334456788999999998
Q ss_pred CCCC
Q 022736 199 VSPE 202 (293)
Q Consensus 199 ~~~~ 202 (293)
.+..
T Consensus 129 ~~a~ 132 (237)
T cd04168 129 AGAD 132 (237)
T ss_pred cCCC
Confidence 8643
No 186
>CHL00071 tufA elongation factor Tu
Probab=99.17 E-value=3e-10 Score=106.09 Aligned_cols=71 Identities=27% Similarity=0.245 Sum_probs=45.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D 197 (293)
++.++.|+||||.. .+. .........+|.+++|+|+.......... ..........+ .++++||+|
T Consensus 73 ~~~~~~~iDtPGh~---~~~-----~~~~~~~~~~D~~ilVvda~~g~~~qt~~-----~~~~~~~~g~~~iIvvvNK~D 139 (409)
T CHL00071 73 ENRHYAHVDCPGHA---DYV-----KNMITGAAQMDGAILVVSAADGPMPQTKE-----HILLAKQVGVPNIVVFLNKED 139 (409)
T ss_pred CCeEEEEEECCChH---HHH-----HHHHHHHHhCCEEEEEEECCCCCcHHHHH-----HHHHHHHcCCCEEEEEEEccC
Confidence 34578999999953 222 22234456789999999998654332211 23344555667 557899999
Q ss_pred CCCCC
Q 022736 198 LVSPE 202 (293)
Q Consensus 198 ~~~~~ 202 (293)
+++.+
T Consensus 140 ~~~~~ 144 (409)
T CHL00071 140 QVDDE 144 (409)
T ss_pred CCCHH
Confidence 98654
No 187
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.16 E-value=2.5e-10 Score=93.75 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=61.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~ 198 (293)
..+.++||+|..+...+.. ......|.++++.|..+......... .+...+.+ -..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~~~~~~~s~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl 117 (175)
T cd01870 49 VELALWDTAGQEDYDRLRP--------LSYPDTDVILMCFSIDSPDSLENIPE---KWTPEVKHFCPNVPIILVGNKKDL 117 (175)
T ss_pred EEEEEEeCCCchhhhhccc--------cccCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeeChhc
Confidence 4578999999754322211 12246788888888875432111000 01112222 14578999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEe----ecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRS----VRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~----~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+.... ... +...+.. .+... .........++.+||++|.|++++..++.+
T Consensus 118 ~~~~~~---~~~----i~~~~~~-~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 118 RNDEHT---RRE----LAKMKQE-PVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred ccChhh---hhh----hhhccCC-CccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHH
Confidence 754311 111 1111100 00000 000011235788999999999999888754
No 188
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.16 E-value=5.3e-10 Score=90.87 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=62.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+.|+||+|.......... ....+|++++|+|..+....... . .+...+.+. ..+.++|.||.|
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~sf~~~-~---~~~~~~~~~~~~~~~iilvgnK~D 116 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQ--------YYRRAQGIFLVYDISSERSYQHI-M---KWVSDVDEYAPEGVQKILIGNKAD 116 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHH--------HhcCCcEEEEEEECCCHHHHHHH-H---HHHHHHHHhCCCCCeEEEEEECcc
Confidence 34679999996544333322 12467889999998765432211 0 011222222 246789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+....+. ...+.....+..+ ..++.+||+++.|++++..|+.
T Consensus 117 l~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 117 EEQKRQV--GDEQGNKLAKEYG---------------MDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred cccccCC--CHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHH
Confidence 8764422 1122222222221 2357899999999999888774
No 189
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.16 E-value=2.8e-10 Score=96.27 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=43.0
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccc-cccEEEEEcccchHHHHhhhcccCCchHHHH--H---HhccCEEEE
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITVVDAKNLLFQIDKYRHLSSYPEAIH--Q---IAFADVVIL 193 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~-~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~--q---i~~a~iivl 193 (293)
+..+.|+||||.......... .+ .. ++++|+|+|+............. +...+. + -..|.+++.
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~-----~~---~~~~~~vV~VvD~~~~~~~~~~~~~~--l~~il~~~~~~~~~~pvliv~ 116 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLE-----TL---KNSAKGIVFVVDSATFQKNLKDVAEF--LYDILTDLEKVKNKIPVLIAC 116 (203)
T ss_pred CceEEEEECCCCHHHHHHHHH-----HH---hccCCEEEEEEECccchhHHHHHHHH--HHHHHHHHhhccCCCCEEEEe
Confidence 345889999997654333221 11 22 48999999998763222211000 111111 1 146789999
Q ss_pred eCCCCCCCCC
Q 022736 194 NKVDLVSPER 203 (293)
Q Consensus 194 NK~D~~~~~~ 203 (293)
||+|+..+..
T Consensus 117 NK~Dl~~a~~ 126 (203)
T cd04105 117 NKQDLFTAKP 126 (203)
T ss_pred cchhhcccCC
Confidence 9999987553
No 190
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.15 E-value=8.8e-11 Score=92.43 Aligned_cols=112 Identities=18% Similarity=0.039 Sum_probs=65.8
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
+.++.++|+||......... ......+.+++|+|+.........................+.++++||+|+.
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~--------~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~ 115 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRR--------LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLP 115 (157)
T ss_pred EEEEEEEecCChHHHHhHHH--------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc
Confidence 45688999999765433321 1225678899999998765433221000001112233356789999999998
Q ss_pred CCCCCcchHHHHH-HHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 200 SPERSGDSLDELE-KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 200 ~~~~~~~~~~~~~-~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
..... .... ....... ....++.+|+.++.++.++..|+.
T Consensus 116 ~~~~~----~~~~~~~~~~~~-------------~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 116 EERVV----SEEELAEQLAKE-------------LGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cccch----HHHHHHHHHHhh-------------cCCcEEEEecCCCCChHHHHHHHh
Confidence 65431 1111 1111111 124578899999999998888864
No 191
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.15 E-value=9.9e-11 Score=95.94 Aligned_cols=106 Identities=18% Similarity=0.149 Sum_probs=58.1
Q ss_pred CCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----HhccCEEEEeC
Q 022736 121 LDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ----IAFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q----i~~a~iivlNK 195 (293)
..+.|+||+|..... .+... ....+|++++|+|..+........ .+...+.+ -..|.++|.||
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~p~iiv~nK 118 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQH--------YYRNVHAVVFVYDVTNMASFHSLP----SWIEECEQHSLPNEVPRILVGNK 118 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHH--------hhcCCCEEEEEEECCCHHHHHhHH----HHHHHHHHhcCCCCCCEEEEEEC
Confidence 457899999964322 11111 124678899999998654332210 01111111 13578999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCC---cchhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD---ATHVTRLEGLL 255 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~---~~~~~~l~~~l 255 (293)
+|+....+. .........+..+ -.++.+||++ +.+++++...+
T Consensus 119 ~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~~~~i~~~f~~l 164 (170)
T cd04115 119 CDLREQIQV--PTDLAQRFADAHS---------------MPLFETSAKDPSENDHVEAIFMTL 164 (170)
T ss_pred ccchhhcCC--CHHHHHHHHHHcC---------------CcEEEEeccCCcCCCCHHHHHHHH
Confidence 998754421 1122222222211 2357789998 66666665544
No 192
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.15 E-value=3.9e-10 Score=93.11 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=60.9
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||+|......+... .....+++|+|+|..+......... .+...+.+. ..|.++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~--------~~~~a~~~ilv~d~~~~~s~~~~~~---~w~~~i~~~~~~~piilvgnK~Dl 117 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPL--------SYPQTDVFLVCFSVVSPSSFENVKE---KWVPEITHHCPKTPFLLVGTQIDL 117 (175)
T ss_pred EEEEEEECCCccchhhhhhh--------hcccCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEECHhh
Confidence 45779999997654332221 1246788999999876543221100 011112111 3578999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEee-----cCCCCchhhcccccCCcchhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSV-----RCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~-----~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
.+..+ +.+.+..... +.+... ........++.+||++|+|++++...+
T Consensus 118 ~~~~~-------~~~~l~~~~~--~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~ 170 (175)
T cd01874 118 RDDPS-------TIEKLAKNKQ--KPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEA 170 (175)
T ss_pred hhChh-------hHHHhhhccC--CCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHH
Confidence 65421 1111111100 000000 000112357889999999998876554
No 193
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=99.14 E-value=1.1e-11 Score=103.81 Aligned_cols=161 Identities=17% Similarity=0.152 Sum_probs=91.1
Q ss_pred EEEEecCCCcHHHHHHHHHc--cCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhh-----hhhccCcceeec-----
Q 022736 35 TVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEE-----WVELANGCICCT----- 102 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~--~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~-----~~~l~~gcicc~----- 102 (293)
-+|+|+|||||||..+.+.+ ...|+++++|+-||+. -+......-+-..-+.+++ -.--++|-+||-
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaN-d~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~ 83 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPAN-DNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEA 83 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcc-cCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHh
Confidence 36799999999999998866 2458999999999987 2222110000000001111 111245566662
Q ss_pred cchhHHHHHHHHHhhcCCCCEEEEecCCCCCc---HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736 103 VKHSLVQALEQLVQRKERLDHILLETTGLANP---APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (293)
Q Consensus 103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~---~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (293)
.-+++.+.++. ..-.|+++|+||..+. ....+.++ ....+...++ +++-++|+.-+.++....+.+....
T Consensus 84 ~idwl~~~l~~-----~~~~Y~lFDcPGQVELft~h~~l~~I~-~~Lek~~~rl-~~V~LiDs~ycs~p~~~iS~lL~sl 156 (290)
T KOG1533|consen 84 NIDWLLEKLKP-----LTDHYVLFDCPGQVELFTHHDSLNKIF-RKLEKLDYRL-VAVNLIDSHYCSDPSKFISSLLVSL 156 (290)
T ss_pred hhHHHHHHhhh-----ccCcEEEEeCCCcEEEEeccchHHHHH-HHHHHcCceE-EEEEeeeceeeCChHHHHHHHHHHH
Confidence 12455555554 2356999999996542 11112121 1112223344 4677788865555444333222223
Q ss_pred HHHHHHhccCEEEEeCCCCCCCCC
Q 022736 180 EAIHQIAFADVVILNKVDLVSPER 203 (293)
Q Consensus 180 ~~~~qi~~a~iivlNK~D~~~~~~ 203 (293)
..+-+++.|.+-|++|+|+....+
T Consensus 157 ~tMl~melphVNvlSK~Dl~~~yg 180 (290)
T KOG1533|consen 157 ATMLHMELPHVNVLSKADLLKKYG 180 (290)
T ss_pred HHHHhhcccchhhhhHhHHHHhhc
Confidence 345677899999999999886543
No 194
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.14 E-value=5.4e-11 Score=101.88 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=60.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH--HhhhcccCCchHHHHHHh-ccCEEEEeC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIA-FADVVILNK 195 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~qi~-~a~iivlNK 195 (293)
.+..+.++||||..+. . .........+|.+++|+|+...... .................. .+.++++||
T Consensus 75 ~~~~i~liDtpG~~~~---~-----~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK 146 (219)
T cd01883 75 EKYRFTILDAPGHRDF---V-----PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNK 146 (219)
T ss_pred CCeEEEEEECCChHHH---H-----HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEc
Confidence 4567899999996432 1 1122334568999999999863110 000000000112223333 356779999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT 249 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~ 249 (293)
+|+............+.+.++.+...... ......++++||++|+|++
T Consensus 147 ~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~------~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 147 MDDVTVNWSEERYDEIKKELSPFLKKVGY------NPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHcCC------CcCCceEEEeecCcCCCCC
Confidence 99984310001234444444322111000 0012458899999999986
No 195
>PLN03110 Rab GTPase; Provisional
Probab=99.14 E-value=5.9e-10 Score=95.23 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=62.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
.++.|+||+|......+...+ ....+++++|+|......... .. .+...+.+. ..+.++|.||+|
T Consensus 61 ~~l~l~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~~~-~~---~~~~~~~~~~~~~~piiiv~nK~D 128 (216)
T PLN03110 61 VKAQIWDTAGQERYRAITSAY--------YRGAVGALLVYDITKRQTFDN-VQ---RWLRELRDHADSNIVIMMAGNKSD 128 (216)
T ss_pred EEEEEEECCCcHHHHHHHHHH--------hCCCCEEEEEEECCChHHHHH-HH---HHHHHHHHhCCCCCeEEEEEEChh
Confidence 357799999965443333221 135788999999875433211 10 012222222 356799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+...... ..+.. ..+...+ . ..++.+||++|.|++++..++..
T Consensus 129 l~~~~~~--~~~~~-~~l~~~~-~-------------~~~~e~SA~~g~~v~~lf~~l~~ 171 (216)
T PLN03110 129 LNHLRSV--AEEDG-QALAEKE-G-------------LSFLETSALEATNVEKAFQTILL 171 (216)
T ss_pred cccccCC--CHHHH-HHHHHHc-C-------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 8654321 11222 2222211 1 24678999999999988877743
No 196
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.13 E-value=3.6e-10 Score=91.98 Aligned_cols=106 Identities=18% Similarity=0.137 Sum_probs=60.9
Q ss_pred CEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-----HhccCEEEEeC
Q 022736 122 DHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ-----IAFADVVILNK 195 (293)
Q Consensus 122 d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q-----i~~a~iivlNK 195 (293)
.+-|+||||.... ..... .....+|++++++|..+...... ... +...+.+ ...|.++|.||
T Consensus 48 ~~~i~D~~g~~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~-~~~---~~~~~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 48 SLEILDTAGQQQADTEQLE--------RSIRWADGFVLVYSITDRSSFDE-ISQ---LKQLIREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEEECCCCcccccchHH--------HHHHhCCEEEEEEECCCHHHHHH-HHH---HHHHHHHHhcCCCCCCEEEEEEC
Confidence 4679999997631 11111 11245788999999987643221 100 1222222 24678999999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc-chhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA-THVTRLEGLLE 256 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~-~~~~~l~~~l~ 256 (293)
+|+.+.... ..+...+..+..+ ..++.+|++++ .|++++..++.
T Consensus 116 ~Dl~~~~~v--~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 116 ADLLHYRQV--STEEGEKLASELG---------------CLFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred CchHHhCcc--CHHHHHHHHHHcC---------------CEEEEeCCCCCchhHHHHHHHHH
Confidence 998654321 2223333333221 23578999999 58988877664
No 197
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.13 E-value=3.1e-10 Score=94.79 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=62.1
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||+|......+... ....++.+++|.|..+......... .+...+.+. ..|.++|.||+|+
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~--------~~~~a~~~ilv~dv~~~~sf~~~~~---~~~~~i~~~~~~~piilvgNK~Dl 116 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSL--------SYADTDVIMLCFSVDSPDSLENVES---KWLGEIREHCPGVKLVLVALKCDL 116 (189)
T ss_pred EEEEEEECCCChhccccccc--------cccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEEChhh
Confidence 45789999997543222111 1245778888888776543321100 011112111 3578999999999
Q ss_pred CCCCCCcc----------hHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 199 VSPERSGD----------SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 199 ~~~~~~~~----------~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
.+..+... ..++..+..+.. ....++.+||++|.|++++..|+....
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 117 REARNERDDLQRYGKHTISYEEGLAVAKRI--------------NALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred ccChhhHHHHhhccCCCCCHHHHHHHHHHc--------------CCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 76432100 001111111111 112467899999999999998886543
No 198
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.13 E-value=2.4e-10 Score=94.07 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=62.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+-|.++|+|+.|||||+|+..|.....-.. +.+-++.. .. .+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T--~tS~e~n~----~~-~~------------------------------- 43 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPT--VTSMENNI----AY-NV------------------------------- 43 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B-----SSEEE----EC-CG-------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCe--eccccCCc----eE-Ee-------------------------------
Confidence 468899999999999999999996421111 11111110 00 00
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH-----H
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH-----Q 184 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~-----q 184 (293)
....+..+-+||+||........ +.+ .....+.+||||||+............. ....+. .
T Consensus 44 -----~~~~~~~~~lvD~PGH~rlr~~~~~~~------~~~~~~k~IIfvvDSs~~~~~~~~~Ae~--Ly~iL~~~~~~~ 110 (181)
T PF09439_consen 44 -----NNSKGKKLRLVDIPGHPRLRSKLLDEL------KYLSNAKGIIFVVDSSTDQKELRDVAEY--LYDILSDTEVQK 110 (181)
T ss_dssp -----SSTCGTCECEEEETT-HCCCHHHHHHH------HHHGGEEEEEEEEETTTHHHHHHHHHHH--HHHHHHHHHCCT
T ss_pred -----ecCCCCEEEEEECCCcHHHHHHHHHhh------hchhhCCEEEEEEeCccchhhHHHHHHH--HHHHHHhhhhcc
Confidence 00133467899999966543322 211 1234577899999998765444332111 111111 2
Q ss_pred HhccCEEEEeCCCCCCCC
Q 022736 185 IAFADVVILNKVDLVSPE 202 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~ 202 (293)
-..+.+|+.||.|+..+.
T Consensus 111 ~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 111 NKPPILIACNKQDLFTAK 128 (181)
T ss_dssp T--EEEEEEE-TTSTT--
T ss_pred CCCCEEEEEeCccccccC
Confidence 245788999999998765
No 199
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.13 E-value=2.2e-10 Score=93.99 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=59.1
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDLV 199 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~~ 199 (293)
.+.++||||.......... .....+.+++|+|..+......... .+...+.+ -..+.++|.||+|+.
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~--------~~~~~~~~ilv~~~~~~~s~~~~~~---~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPL--------SYPMTDVFLICFSVVNPASFQNVKE---EWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred EEEEEeCCCcccccccccc--------cCCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEeEchhhh
Confidence 4568999996543222211 1245678899999876543211100 01122222 245679999999986
Q ss_pred CCCCCc----------chHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 200 SPERSG----------DSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 200 ~~~~~~----------~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+..... ...+......+.+ ....++.+||++|.|++++.+.+
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 118 DDPKTLARLNDMKEKPVTVEQGQKLAKEI--------------GAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred cChhhHHHHhhccCCCCCHHHHHHHHHHc--------------CCCEEEEecCCcCCCHHHHHHHH
Confidence 543100 0011111122211 22357889999999999887654
No 200
>PLN03108 Rab family protein; Provisional
Probab=99.12 E-value=4.3e-10 Score=95.67 Aligned_cols=106 Identities=18% Similarity=0.042 Sum_probs=61.6
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVDL 198 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D~ 198 (293)
.+-++||+|......+... ....+|.+++|+|..+....... . .+...+.+. ..+.+++.||+|+
T Consensus 56 ~l~l~Dt~G~~~~~~~~~~--------~~~~ad~~vlv~D~~~~~s~~~l-~---~~~~~~~~~~~~~~piiiv~nK~Dl 123 (210)
T PLN03108 56 KLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRETFNHL-A---SWLEDARQHANANMTIMLIGNKCDL 123 (210)
T ss_pred EEEEEeCCCcHHHHHHHHH--------HhccCCEEEEEEECCcHHHHHHH-H---HHHHHHHHhcCCCCcEEEEEECccC
Confidence 3568999996433222211 11357889999999865432211 0 011111111 3567999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+... ...+...+..+..+ ..++.+|++++.|++++..|+.
T Consensus 124 ~~~~~--~~~~~~~~~~~~~~---------------~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 124 AHRRA--VSTEEGEQFAKEHG---------------LIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred ccccC--CCHHHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHH
Confidence 75432 13344444443321 1367899999999998776664
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.12 E-value=2.7e-10 Score=98.45 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=51.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
-++++|++|+|||||+|+|... +.. +.+.++++.......+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~----~~~-v~~~~~tT~~~~~g~~~--------------------------------- 43 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNT----KSE-VAAYEFTTLTCVPGVLE--------------------------------- 43 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCC----Ccc-ccCCCCccccceEEEEE---------------------------------
Confidence 3678999999999999999943 222 22333321111110000
Q ss_pred HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH
Q 022736 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~ 166 (293)
..+.++.++||||+.+.......+ ....+.....+|.+++|+|+.+..
T Consensus 44 ----~~~~~i~l~DtpG~~~~~~~~~~~-~~~~l~~~~~ad~il~V~D~t~~~ 91 (233)
T cd01896 44 ----YKGAKIQLLDLPGIIEGAADGKGR-GRQVIAVARTADLILMVLDATKPE 91 (233)
T ss_pred ----ECCeEEEEEECCCcccccccchhH-HHHHHHhhccCCEEEEEecCCcch
Confidence 123457799999976533211111 011233446789999999987644
No 202
>PRK14974 cell division protein FtsY; Provisional
Probab=99.11 E-value=2.1e-09 Score=97.21 Aligned_cols=149 Identities=22% Similarity=0.216 Sum_probs=82.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchh
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
.+..+++++|++|+||||++.+|... ..+.+++++..|... .+.-..+-.. ...++. ++......+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R-~~a~eqL~~~a~~lgv~----------v~~~~~g~d 206 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR-AGAIEQLEEHAERLGVK----------VIKHKYGAD 206 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc-HHHHHHHHHHHHHcCCc----------eecccCCCC
Confidence 34678999999999999999988763 457789998877432 1111111000 000110 000011111
Q ss_pred ----HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736 107 ----LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (293)
Q Consensus 107 ----l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (293)
+..++... ...+.|+|||||+|... ...++..+. . +......+.+++|+|+....+.... ...
T Consensus 207 p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~--~-i~~~~~pd~~iLVl~a~~g~d~~~~-------a~~ 274 (336)
T PRK14974 207 PAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELK--K-IVRVTKPDLVIFVGDALAGNDAVEQ-------ARE 274 (336)
T ss_pred HHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHH--H-HHHhhCCceEEEeeccccchhHHHH-------HHH
Confidence 12223322 13568999999999654 445544321 1 1122346778999999765332221 122
Q ss_pred HHHHhccCEEEEeCCCCCCC
Q 022736 182 IHQIAFADVVILNKVDLVSP 201 (293)
Q Consensus 182 ~~qi~~a~iivlNK~D~~~~ 201 (293)
+.+.-..+-+|+||.|....
T Consensus 275 f~~~~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 275 FNEAVGIDGVILTKVDADAK 294 (336)
T ss_pred HHhcCCCCEEEEeeecCCCC
Confidence 23334579999999998643
No 203
>PRK12735 elongation factor Tu; Reviewed
Probab=99.11 E-value=1.2e-09 Score=101.78 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE-EEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i-ivlNK~D 197 (293)
++.++.|+||||.. .+. .........+|.+++|+|+......... ++...+...+.+.+ +++||+|
T Consensus 73 ~~~~i~~iDtPGh~---~f~-----~~~~~~~~~aD~~llVvda~~g~~~qt~-----e~l~~~~~~gi~~iivvvNK~D 139 (396)
T PRK12735 73 ANRHYAHVDCPGHA---DYV-----KNMITGAAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred CCcEEEEEECCCHH---HHH-----HHHHhhhccCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEecC
Confidence 34578999999963 222 2223445678999999999764322211 12333344455666 4799999
Q ss_pred CCCCCCCcch-HHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch
Q 022736 198 LVSPERSGDS-LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH 247 (293)
Q Consensus 198 ~~~~~~~~~~-~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~ 247 (293)
+.+.++.... ..++.+.++.+.-.. ....++++|+++|.+
T Consensus 140 l~~~~~~~~~~~~ei~~~l~~~~~~~----------~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 140 MVDDEELLELVEMEVRELLSKYDFPG----------DDTPIIRGSALKALE 180 (396)
T ss_pred CcchHHHHHHHHHHHHHHHHHcCCCc----------CceeEEecchhcccc
Confidence 9854321001 113334444332100 013467888888743
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.11 E-value=7.7e-10 Score=107.38 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=63.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
.+..+.|+||||..+....... ....+|.+++|+|+.......... ......+...+.++++||+|+
T Consensus 66 ~~~~inliDTPG~~df~~~v~~--------~l~~aDg~ILVVDa~~G~~~qt~~-----~l~~a~~~gip~IVviNKiD~ 132 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVER--------VMSMVDSVLLVVDAFDGPMPQTRF-----VTKKAFAYGLKPIVVINKVDR 132 (607)
T ss_pred CCEEEEEEECCCcchhHHHHHH--------HHHhCCEEEEEEecccCccHHHHH-----HHHHHHHcCCCEEEEEECcCC
Confidence 4567899999998776543322 235689999999998653322211 122334456788999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH 247 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~ 247 (293)
.++.- ...++++...+..+... ....+ .+++.+|+++|.+
T Consensus 133 ~~a~~-~~vl~ei~~l~~~l~~~-------~~~~~-~PVi~~SA~~G~~ 172 (607)
T PRK10218 133 PGARP-DWVVDQVFDLFVNLDAT-------DEQLD-FPIVYASALNGIA 172 (607)
T ss_pred CCCch-hHHHHHHHHHHhccCcc-------ccccC-CCEEEeEhhcCcc
Confidence 75431 12334444444332211 11112 3478899999873
No 205
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.10 E-value=1.1e-09 Score=101.49 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=84.6
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
.+..++.++|++||||||++.+|... ..|.+++++..|+.....++.........++. +.......+.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp----------~~~~~~~~dp 167 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIP----------FYGSYTESDP 167 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCe----------EEeecCCCCH
Confidence 34668999999999999999999753 45889999998874311111100000000100 0000111121
Q ss_pred H----HHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736 108 V----QALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (293)
Q Consensus 108 ~----~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (293)
. +.+..+. ..++|+|||||+|-.... ...+.+. . +......+.+++|+|+........ ....+
T Consensus 168 ~~i~~~~l~~~~--~~~~DvViIDTaGr~~~d~~lm~El~--~-i~~~~~p~e~lLVlda~~Gq~a~~-------~a~~F 235 (429)
T TIGR01425 168 VKIASEGVEKFK--KENFDIIIVDTSGRHKQEDSLFEEML--Q-VAEAIQPDNIIFVMDGSIGQAAEA-------QAKAF 235 (429)
T ss_pred HHHHHHHHHHHH--hCCCCEEEEECCCCCcchHHHHHHHH--H-HhhhcCCcEEEEEeccccChhHHH-------HHHHH
Confidence 1 2333222 257899999999965543 3332221 1 123345677999999976543322 12344
Q ss_pred HHHhccCEEEEeCCCCCC
Q 022736 183 HQIAFADVVILNKVDLVS 200 (293)
Q Consensus 183 ~qi~~a~iivlNK~D~~~ 200 (293)
.+.-..+-+|+||.|...
T Consensus 236 ~~~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 236 KDSVDVGSVIITKLDGHA 253 (429)
T ss_pred HhccCCcEEEEECccCCC
Confidence 444457899999999754
No 206
>PLN03127 Elongation factor Tu; Provisional
Probab=99.08 E-value=5.8e-10 Score=104.99 Aligned_cols=71 Identities=27% Similarity=0.295 Sum_probs=45.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D 197 (293)
.+.+++||||||..+. . .........+|.+++|+|+.......+. +....+.....+. ++++||+|
T Consensus 122 ~~~~i~~iDtPGh~~f---~-----~~~~~g~~~aD~allVVda~~g~~~qt~-----e~l~~~~~~gip~iIvviNKiD 188 (447)
T PLN03127 122 AKRHYAHVDCPGHADY---V-----KNMITGAAQMDGGILVVSAPDGPMPQTK-----EHILLARQVGVPSLVVFLNKVD 188 (447)
T ss_pred CCeEEEEEECCCccch---H-----HHHHHHHhhCCEEEEEEECCCCCchhHH-----HHHHHHHHcCCCeEEEEEEeec
Confidence 3457899999998542 1 1122333568999999999765332221 1334455566675 67899999
Q ss_pred CCCCC
Q 022736 198 LVSPE 202 (293)
Q Consensus 198 ~~~~~ 202 (293)
+++.+
T Consensus 189 lv~~~ 193 (447)
T PLN03127 189 VVDDE 193 (447)
T ss_pred cCCHH
Confidence 98643
No 207
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.07 E-value=3.2e-10 Score=85.94 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=68.6
Q ss_pred EEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCC
Q 022736 124 ILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPE 202 (293)
Q Consensus 124 iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~ 202 (293)
-.||||| +.+..... ...+....++|.+++|-.+....+... +....-...+.|-|++|+|+.++.
T Consensus 40 ~~IDTPGEy~~~~~~Y-----~aL~tt~~dadvi~~v~~and~~s~f~--------p~f~~~~~k~vIgvVTK~DLaed~ 106 (148)
T COG4917 40 GDIDTPGEYFEHPRWY-----HALITTLQDADVIIYVHAANDPESRFP--------PGFLDIGVKKVIGVVTKADLAEDA 106 (148)
T ss_pred cccCCchhhhhhhHHH-----HHHHHHhhccceeeeeecccCccccCC--------cccccccccceEEEEecccccchH
Confidence 4789999 33322222 222345567887887776654332211 112222345689999999999643
Q ss_pred CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 203 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 203 ~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+++..+..|++.. ..+||.+|+.+..|+++|.++|..
T Consensus 107 ----dI~~~~~~L~eaG--------------a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 107 ----DISLVKRWLREAG--------------AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ----hHHHHHHHHHHcC--------------CcceEEEeccCcccHHHHHHHHHh
Confidence 5788888888654 267899999999999999998864
No 208
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.07 E-value=9.2e-11 Score=115.32 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=62.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D 197 (293)
.+.+++||||||..+ +. .........+|.+++|||+......... +.......+.. +.++++||+|
T Consensus 102 ~~~~~~liDtPG~~~---f~-----~~~~~~~~~aD~~llVvda~~g~~~~t~-----e~~~~~~~~~~~~iivvvNK~D 168 (632)
T PRK05506 102 PKRKFIVADTPGHEQ---YT-----RNMVTGASTADLAIILVDARKGVLTQTR-----RHSFIASLLGIRHVVLAVNKMD 168 (632)
T ss_pred CCceEEEEECCChHH---HH-----HHHHHHHHhCCEEEEEEECCCCccccCH-----HHHHHHHHhCCCeEEEEEEecc
Confidence 456789999999542 11 1122345678999999999765432111 02223344443 4677999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR 250 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~ 250 (293)
+++.++ ..++.+...++.+.... .+....++++|+++|.|+.+
T Consensus 169 ~~~~~~--~~~~~i~~~i~~~~~~~--------~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQ--EVFDEIVADYRAFAAKL--------GLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchh--HHHHHHHHHHHHHHHHc--------CCCCccEEEEecccCCCccc
Confidence 985321 12333444443221110 01113578999999999864
No 209
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.07 E-value=2e-10 Score=108.98 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=64.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-ccCEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a~iivlNK~D 197 (293)
++.+++||||||..+ +.. ........+|.+++|||+......... ........++ .+.++++||+|
T Consensus 105 ~~~~i~~iDTPGh~~---f~~-----~~~~~l~~aD~allVVDa~~G~~~qt~-----~~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHEQ---YTR-----NMATGASTCDLAILLIDARKGVLDQTR-----RHSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcHH---HHH-----HHHHHHhhCCEEEEEEECCCCccccch-----HHHHHHHHhCCCceEEEEEeec
Confidence 356799999999432 221 122334778999999999765432111 0122333333 35678999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
+++..+ ..+..+.+.++.+..... .....+++++|+++|+|+..+
T Consensus 172 ~~~~~~--~~~~~i~~~l~~~~~~~~-------~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYSE--EVFERIREDYLTFAEQLP-------GNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccchh--HHHHHHHHHHHHHHHhcC-------CCCCceEEEEEeecCCCcccc
Confidence 985332 234455555543221110 012256789999999998754
No 210
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.06 E-value=9.9e-10 Score=109.07 Aligned_cols=136 Identities=16% Similarity=0.086 Sum_probs=75.2
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.++.-|+|+|.+|+|||||+++|+...... -.+-..+.|+ ...|...... ..++.. ......+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~-~~~~~~~~g~-~~~D~~~~e~-~rgiti----~~~~~~~---------- 70 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRI-HKIGEVHDGA-ATMDWMEQEK-ERGITI----TSAATTV---------- 70 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCc-cccccccCCc-cccCCCHHHH-hcCCCE----ecceEEE----------
Confidence 357789999999999999999998532110 0011111121 1112111110 001100 0000000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
...+.++.|+||||..+..... ......+|++++|+|+.......... ......+...+.
T Consensus 71 -------~~~~~~i~liDTPG~~~~~~~~--------~~~l~~~D~~ilVvda~~g~~~~~~~-----~~~~~~~~~~p~ 130 (689)
T TIGR00484 71 -------FWKGHRINIIDTPGHVDFTVEV--------ERSLRVLDGAVAVLDAVGGVQPQSET-----VWRQANRYEVPR 130 (689)
T ss_pred -------EECCeEEEEEECCCCcchhHHH--------HHHHHHhCEEEEEEeCCCCCChhHHH-----HHHHHHHcCCCE
Confidence 1245678999999987643221 22335679999999998654332211 222344456789
Q ss_pred EEEEeCCCCCCCC
Q 022736 190 VVILNKVDLVSPE 202 (293)
Q Consensus 190 iivlNK~D~~~~~ 202 (293)
++++||+|+.+..
T Consensus 131 ivviNK~D~~~~~ 143 (689)
T TIGR00484 131 IAFVNKMDKTGAN 143 (689)
T ss_pred EEEEECCCCCCCC
Confidence 9999999998653
No 211
>PRK00049 elongation factor Tu; Reviewed
Probab=99.06 E-value=3e-09 Score=98.95 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=44.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE-EEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i-ivlNK~D 197 (293)
++.+++||||||.. .+. .........+|.+++|+|+......... ++...+...+.+.+ +++||+|
T Consensus 73 ~~~~i~~iDtPG~~---~f~-----~~~~~~~~~aD~~llVVDa~~g~~~qt~-----~~~~~~~~~g~p~iiVvvNK~D 139 (396)
T PRK00049 73 EKRHYAHVDCPGHA---DYV-----KNMITGAAQMDGAILVVSAADGPMPQTR-----EHILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred CCeEEEEEECCCHH---HHH-----HHHHhhhccCCEEEEEEECCCCCchHHH-----HHHHHHHHcCCCEEEEEEeecC
Confidence 34578999999973 222 2223445678999999999865433221 12334444566766 5799999
Q ss_pred CCCC
Q 022736 198 LVSP 201 (293)
Q Consensus 198 ~~~~ 201 (293)
+.+.
T Consensus 140 ~~~~ 143 (396)
T PRK00049 140 MVDD 143 (396)
T ss_pred Ccch
Confidence 9864
No 212
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.05 E-value=2.7e-09 Score=89.33 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=63.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~ 198 (293)
..+-|+||+|......+.... ...++++|+|.|.++......... .+...+.+ -..|.++|.||.|+
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~--------~~~a~~~ilvydit~~~Sf~~~~~---~w~~~i~~~~~~~piilvgNK~DL 119 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLS--------YPQTNVFIICFSIASPSSYENVRH---KWHPEVCHHCPNVPILLVGTKKDL 119 (191)
T ss_pred EEEEEEECCCchhhhhhhhhh--------ccCCCEEEEEEECCCHHHHHHHHH---HHHHHHHhhCCCCCEEEEEeChhh
Confidence 457799999976544333221 146788999999876544221100 01111111 13578999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEe----ecCCCCchhhcccccCCcchhhhhhhhhhhhc
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRS----VRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~----~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
.+... ..+. ++..... .+... .........++.+||++|+|++++..++....
T Consensus 120 ~~~~~---~~~~----~~~~~~~-~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 120 RNDAD---TLKK----LKEQGQA-PITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred hcChh---hHHH----HhhccCC-CCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 65321 0111 1111000 00000 00001112468899999999999988876543
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.05 E-value=8.3e-09 Score=86.69 Aligned_cols=158 Identities=23% Similarity=0.267 Sum_probs=86.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-eccchhHH-
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLV- 108 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~~l~- 108 (293)
.+++++|+.|+||||.+-+|... ..++++++++.|..- .+.-..+-. ..+..+-.++ +....+-.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R-~ga~eQL~~----------~a~~l~vp~~~~~~~~~~~~ 70 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR-IGAVEQLKT----------YAEILGVPFYVARTESDPAE 70 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS-THHHHHHHH----------HHHHHTEEEEESSTTSCHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC-ccHHHHHHH----------HHHHhccccchhhcchhhHH
Confidence 47899999999999999999763 239999999988653 222211110 0111111111 11122222
Q ss_pred ---HHHHHHHhhcCCCCEEEEecCCCCCcHHH-HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 109 ---QALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 109 ---~~l~~l~~~~~~~d~iiidt~G~~~~~~~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
+.++.. ...++|+|||||+|......- ...+ ...+ .....+.+++|+++......+.. ...+.+
T Consensus 71 ~~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el--~~~~-~~~~~~~~~LVlsa~~~~~~~~~-------~~~~~~ 138 (196)
T PF00448_consen 71 IAREALEKF--RKKGYDLVLIDTAGRSPRDEELLEEL--KKLL-EALNPDEVHLVLSATMGQEDLEQ-------ALAFYE 138 (196)
T ss_dssp HHHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHH--HHHH-HHHSSSEEEEEEEGGGGGHHHHH-------HHHHHH
T ss_pred HHHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHH--HHHh-hhcCCccceEEEecccChHHHHH-------HHHHhh
Confidence 233332 235689999999997654322 2211 1111 22245678999999876654432 112222
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
.-..+-++++|.|-... ...+.+.+....
T Consensus 139 ~~~~~~lIlTKlDet~~------~G~~l~~~~~~~ 167 (196)
T PF00448_consen 139 AFGIDGLILTKLDETAR------LGALLSLAYESG 167 (196)
T ss_dssp HSSTCEEEEESTTSSST------THHHHHHHHHHT
T ss_pred cccCceEEEEeecCCCC------cccceeHHHHhC
Confidence 23468899999997643 245555555443
No 214
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.05 E-value=8.9e-09 Score=92.76 Aligned_cols=152 Identities=17% Similarity=0.237 Sum_probs=81.1
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchh-
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHS- 106 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~- 106 (293)
.+..+++++|++|+||||++..|... ..+.+|.++..|......++.........++ +.+......+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i----------~~~~~~~~~dp 181 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV----------PVIAQKEGADP 181 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCc----------eEEEeCCCCCH
Confidence 34678999999999999999999763 4578999998886421111110000000000 1111111111
Q ss_pred ---HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhh-cchhhcc--ccccccEEEEEcccchHHHHhhhcccCCch
Q 022736 107 ---LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLW-LDDQLES--AVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (293)
Q Consensus 107 ---l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~-~~~~~~~--~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (293)
..+.+... ...++|+|||||||... ....++.+. ....... ....+.+++|+|+......... .
T Consensus 182 a~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-------a 252 (318)
T PRK10416 182 ASVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-------A 252 (318)
T ss_pred HHHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-------H
Confidence 11222211 23679999999999654 222222111 0000000 1234568999999865443321 1
Q ss_pred HHHHHHhccCEEEEeCCCCCC
Q 022736 180 EAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 180 ~~~~qi~~a~iivlNK~D~~~ 200 (293)
..+.+.-..+-+|+||.|...
T Consensus 253 ~~f~~~~~~~giIlTKlD~t~ 273 (318)
T PRK10416 253 KAFHEAVGLTGIILTKLDGTA 273 (318)
T ss_pred HHHHhhCCCCEEEEECCCCCC
Confidence 122222346889999999553
No 215
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.05 E-value=3.5e-10 Score=98.98 Aligned_cols=157 Identities=21% Similarity=0.254 Sum_probs=97.2
Q ss_pred ccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC--CCCccccchhhhhcCCCCcchhhhhhccCcceeec
Q 022736 25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE--FGEEIGVERAMINEGEGGALVEEWVELANGCICCT 102 (293)
Q Consensus 25 ~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d--~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (293)
........|||.++|+.|||||||+++|... ++.-++ |.+ ...+.... .+
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~A------al~p~drLFAT-LDpT~h~a-------------~L-------- 222 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALTKA------ALYPNDRLFAT-LDPTLHSA-------------HL-------- 222 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHHhh------hcCccchhhee-ccchhhhc-------------cC--------
Confidence 3445668999999999999999999999842 111111 111 11111110 11
Q ss_pred cchhHHHHHHHHHhhcCCCCEEEEecCCCCC--cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736 103 VKHSLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (293)
Q Consensus 103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~--~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (293)
..+..+++.||.|+.. |..+...| +..+.+....|.++.|+|.++..-..... ....
T Consensus 223 ---------------psg~~vlltDTvGFisdLP~~LvaAF--~ATLeeVaeadlllHvvDiShP~ae~q~e----~Vl~ 281 (410)
T KOG0410|consen 223 ---------------PSGNFVLLTDTVGFISDLPIQLVAAF--QATLEEVAEADLLLHVVDISHPNAEEQRE----TVLH 281 (410)
T ss_pred ---------------CCCcEEEEeechhhhhhCcHHHHHHH--HHHHHHHhhcceEEEEeecCCccHHHHHH----HHHH
Confidence 2344588999999654 55555555 56788888999999999998754322211 1344
Q ss_pred HHHHHhccC-------EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736 181 AIHQIAFAD-------VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG 253 (293)
Q Consensus 181 ~~~qi~~a~-------iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~ 253 (293)
.+.+++.++ +=|-||+|..+..- ++. ....+.+|+.+|+|.+++..
T Consensus 282 vL~~igv~~~pkl~~mieVdnkiD~e~~~~----------------------e~E-----~n~~v~isaltgdgl~el~~ 334 (410)
T KOG0410|consen 282 VLNQIGVPSEPKLQNMIEVDNKIDYEEDEV----------------------EEE-----KNLDVGISALTGDGLEELLK 334 (410)
T ss_pred HHHhcCCCcHHHHhHHHhhccccccccccC----------------------ccc-----cCCccccccccCccHHHHHH
Confidence 556666543 33457777654321 000 01246889999999998887
Q ss_pred hhhh
Q 022736 254 LLEE 257 (293)
Q Consensus 254 ~l~~ 257 (293)
.+.+
T Consensus 335 a~~~ 338 (410)
T KOG0410|consen 335 AEET 338 (410)
T ss_pred HHHH
Confidence 7653
No 216
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.05 E-value=1.5e-09 Score=105.43 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=75.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
.+..+.||||||..+...... .....+|.+++|||+.......... +.....+...+.++++||+|+
T Consensus 62 ~~~kinlIDTPGh~DF~~ev~--------~~l~~aD~alLVVDa~~G~~~qT~~-----~l~~a~~~~ip~IVviNKiD~ 128 (594)
T TIGR01394 62 NGTKINIVDTPGHADFGGEVE--------RVLGMVDGVLLLVDASEGPMPQTRF-----VLKKALELGLKPIVVINKIDR 128 (594)
T ss_pred CCEEEEEEECCCHHHHHHHHH--------HHHHhCCEEEEEEeCCCCCcHHHHH-----HHHHHHHCCCCEEEEEECCCC
Confidence 456788999999866433221 2235679999999997643222111 233344556788999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc----------hhhhhhhhhhhhccCCCCCCCC
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT----------HVTRLEGLLEEHQYKSSQNLHD 268 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~----------~~~~l~~~l~~~~~~~~~~~~~ 268 (293)
.++.. ....+++.+.+..+.... ..+. .+++.+||++|. ++..|.+.+.+....|. ...+
T Consensus 129 ~~a~~-~~v~~ei~~l~~~~g~~~-------e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~-~~~~ 198 (594)
T TIGR01394 129 PSARP-DEVVDEVFDLFAELGADD-------EQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK-GDLD 198 (594)
T ss_pred CCcCH-HHHHHHHHHHHHhhcccc-------cccc-CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC-CCCC
Confidence 75421 112344444444332210 1111 246788999885 56666666554332221 1223
Q ss_pred CCEEEEEEe
Q 022736 269 NNVRTLSIC 277 (293)
Q Consensus 269 ~~~~~~~~~ 277 (293)
.+++..++.
T Consensus 199 ~pl~~~V~~ 207 (594)
T TIGR01394 199 EPLQMLVTN 207 (594)
T ss_pred CCEEEEEEE
Confidence 445554443
No 217
>PRK12739 elongation factor G; Reviewed
Probab=99.04 E-value=7.3e-10 Score=109.97 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=76.3
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.++.-|+|+|.+|+|||||+++|+.... -.+++.+. .|+ ...|...... ..++ .+....+++
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~--~~~-~~~D~~~~E~-~rgi------ti~~~~~~~------- 68 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVH--DGA-ATMDWMEQEQ-ERGI------TITSAATTC------- 68 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCcccccccc--CCc-cccCCChhHh-hcCC------CccceeEEE-------
Confidence 4677899999999999999999985311 11111111 111 1122211111 0011 111111110
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
..++.++.||||||..+... ........+|++++|+|+.......+.. ......+.+.+
T Consensus 69 --------~~~~~~i~liDTPG~~~f~~--------e~~~al~~~D~~ilVvDa~~g~~~qt~~-----i~~~~~~~~~p 127 (691)
T PRK12739 69 --------FWKGHRINIIDTPGHVDFTI--------EVERSLRVLDGAVAVFDAVSGVEPQSET-----VWRQADKYGVP 127 (691)
T ss_pred --------EECCEEEEEEcCCCHHHHHH--------HHHHHHHHhCeEEEEEeCCCCCCHHHHH-----HHHHHHHcCCC
Confidence 12456789999999754211 1234446779999999998664333221 23334455678
Q ss_pred CEEEEeCCCCCCCC
Q 022736 189 DVVILNKVDLVSPE 202 (293)
Q Consensus 189 ~iivlNK~D~~~~~ 202 (293)
.++++||+|+.+.+
T Consensus 128 ~iv~iNK~D~~~~~ 141 (691)
T PRK12739 128 RIVFVNKMDRIGAD 141 (691)
T ss_pred EEEEEECCCCCCCC
Confidence 89999999998643
No 218
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.04 E-value=5.5e-10 Score=96.00 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=79.2
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
...+++++|.+|+|||||+|.|+..... ..+....|. .. +++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~---~~~~~~~g~-i~-------------------------i~~--------- 79 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTK---QNISDIKGP-IT-------------------------VVT--------- 79 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhccc---Ccccccccc-EE-------------------------EEe---------
Confidence 3456889999999999999999853111 111111121 00 000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV 190 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i 190 (293)
..+.++.++||||.. ... +.....+|.+++|+|+.......+.. +...+...+.+.+
T Consensus 80 -------~~~~~i~~vDtPg~~--~~~---------l~~ak~aDvVllviDa~~~~~~~~~~-----i~~~l~~~g~p~v 136 (225)
T cd01882 80 -------GKKRRLTFIECPNDI--NAM---------IDIAKVADLVLLLIDASFGFEMETFE-----FLNILQVHGFPRV 136 (225)
T ss_pred -------cCCceEEEEeCCchH--HHH---------HHHHHhcCEEEEEEecCcCCCHHHHH-----HHHHHHHcCCCeE
Confidence 133468899999843 111 22235689999999997544322211 2333334456755
Q ss_pred E-EEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc
Q 022736 191 V-ILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 245 (293)
Q Consensus 191 i-vlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~ 245 (293)
+ |+||+|+++.. ..+..+.+.|+..... ..++..+++.+||++.
T Consensus 137 i~VvnK~D~~~~~---~~~~~~~~~l~~~~~~--------~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 137 MGVLTHLDLFKKN---KTLRKTKKRLKHRFWT--------EVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEeccccCCcH---HHHHHHHHHHHHHHHH--------hhCCCCcEEEEeeccC
Confidence 5 99999998543 2344555555431110 0112356777777654
No 219
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.03 E-value=1e-09 Score=96.84 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
.+.++.+|||||..+..... ......+|.+++|+|+.......... ........+.+.++++||+|+
T Consensus 62 ~~~~i~liDtPG~~~f~~~~--------~~~l~~aD~~i~Vvd~~~g~~~~~~~-----~~~~~~~~~~p~iivvNK~D~ 128 (268)
T cd04170 62 KGHKINLIDTPGYADFVGET--------RAALRAADAALVVVSAQSGVEVGTEK-----LWEFADEAGIPRIIFINKMDR 128 (268)
T ss_pred CCEEEEEEECcCHHHHHHHH--------HHHHHHCCEEEEEEeCCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCcc
Confidence 35678999999975432222 12235678999999998653322110 122344556789999999998
Q ss_pred CCCCCCcchHHHHHHHHHhh
Q 022736 199 VSPERSGDSLDELEKEIHEI 218 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~l 218 (293)
.... .....+.++..
T Consensus 129 ~~~~-----~~~~~~~l~~~ 143 (268)
T cd04170 129 ERAD-----FDKTLAALQEA 143 (268)
T ss_pred CCCC-----HHHHHHHHHHH
Confidence 7653 34444555443
No 220
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.03 E-value=1.7e-09 Score=100.89 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=65.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-HHHhhhcccCCchHHHHHHhc-cCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D~ 198 (293)
..+.++||||..+. . ..+......+|.+++|+|+.... ..... +....+...+. +.++++||+|+
T Consensus 80 ~~i~liDtPGh~~f---~-----~~~~~g~~~aD~aIlVVDa~~g~~~~qt~-----e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 80 RRVSFVDAPGHETL---M-----ATMLSGAALMDGALLVIAANEPCPQPQTK-----EHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred cEEEEEECCCHHHH---H-----HHHHHHHHHCCEEEEEEECCCCccccchH-----HHHHHHHHcCCCeEEEEEEcccc
Confidence 46789999996332 1 11233345679999999998642 11100 01222333333 46888999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+.++.....+++.+.++... ....+++++|+++|+|++.|.+++...
T Consensus 147 ~~~~~~~~~~~~i~~~l~~~~------------~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 147 VSKEKALENYEEIKEFVKGTV------------AENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred CCHHHHHHHHHHHHhhhhhcc------------cCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 865321011222232222110 011357899999999999999998753
No 221
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.03 E-value=1.3e-09 Score=93.24 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=52.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
+..+.|+||||..+..... ......+|++++|+|+.......... ......+.+.+.++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~--------~~~l~~aD~~ilVvD~~~g~~~~t~~-----~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEV--------TAALRLCDGALVVVDAVEGVCVQTET-----VLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHH--------HHHHHhcCeeEEEEECCCCCCHHHHH-----HHHHHHHcCCCEEEEEECCCcc
Confidence 4667899999987644332 22336789999999998654322210 1122223346889999999986
Q ss_pred CCCC---CcchHHHHHHHHHhhcC
Q 022736 200 SPER---SGDSLDELEKEIHEINS 220 (293)
Q Consensus 200 ~~~~---~~~~~~~~~~~l~~lnp 220 (293)
..+. ..+...++...+.++|.
T Consensus 139 ~~e~~~~~~~~~~~~~~ii~~~n~ 162 (222)
T cd01885 139 ILELKLSPEEAYQRLARIIEQVNA 162 (222)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHhH
Confidence 2110 01344555666666654
No 222
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.02 E-value=3.8e-09 Score=98.31 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE-EEEeCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV-VILNKVDL 198 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i-ivlNK~D~ 198 (293)
+..+.||||||..+. . ..+......+|.+++|+|+......... ++.........+.+ +++||+|+
T Consensus 74 ~~~~~liDtpGh~~f---~-----~~~~~~~~~~D~~ilVvda~~g~~~qt~-----e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 74 NRHYAHVDCPGHADY---V-----KNMITGAAQMDGAILVVSATDGPMPQTR-----EHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CEEEEEEECCchHHH---H-----HHHHHHHhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCEEEEEEEeccc
Confidence 456899999997432 1 1223444678999999999864322211 12333444556665 57999999
Q ss_pred CCCCCCcc-hHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc
Q 022736 199 VSPERSGD-SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT 246 (293)
Q Consensus 199 ~~~~~~~~-~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~ 246 (293)
++.+++.. ..+++++.++.+.-. -..-+++++|+++|.
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~----------~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 141 VDDEELLELVEMEVRELLSEYDFP----------GDDTPIIRGSALKAL 179 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCC----------ccCccEEECcccccc
Confidence 86432100 012344444433210 011356788998874
No 223
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.02 E-value=3.3e-09 Score=99.14 Aligned_cols=113 Identities=21% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH-HHHhhhcccCCchHHHHHHhc-cCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL-FQIDKYRHLSSYPEAIHQIAF-ADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~-~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D~ 198 (293)
..+.|+||||..+ +. ..++.....+|.+++|+|+.... ...... ....+..... +.++|+||+|+
T Consensus 85 ~~i~liDtPG~~~---f~-----~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-----~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHET---LM-----ATMLSGAALMDGAILVIAANEPCPQPQTKE-----HLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHH---HH-----HHHHHHHhhCCEEEEEEECCCCCCChhHHH-----HHHHHHHcCCCcEEEEEEeecc
Confidence 4688999999532 21 23344556789999999998542 111100 1223333333 46888999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+.++.....+++...++... ....+++++|+++|+|++.|.+++...
T Consensus 152 ~~~~~~~~~~~~i~~~l~~~~------------~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 152 VSKERALENYEQIKEFVKGTV------------AENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred ccchhHHHHHHHHHHHhcccc------------CCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 875421011222222222110 012357899999999999999988764
No 224
>PRK00007 elongation factor G; Reviewed
Probab=99.02 E-value=1.4e-09 Score=108.03 Aligned_cols=135 Identities=17% Similarity=0.152 Sum_probs=76.5
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.++.-|+|+|.+|+|||||+++|+..... .++..+. -|+ ...|...... ..++ .+......+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~--~~~-~~~D~~~~E~-~rg~------ti~~~~~~~------- 70 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQ-ERGI------TITSAATTC------- 70 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCcccccccc--CCc-ccCCCCHHHH-hCCC------CEeccEEEE-------
Confidence 35778999999999999999999853111 1111111 111 1112111111 0011 111100100
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
...+..+.||||||..+... ........+|++++|+|+.......+.. ......+...+
T Consensus 71 --------~~~~~~~~liDTPG~~~f~~--------ev~~al~~~D~~vlVvda~~g~~~qt~~-----~~~~~~~~~~p 129 (693)
T PRK00007 71 --------FWKDHRINIIDTPGHVDFTI--------EVERSLRVLDGAVAVFDAVGGVEPQSET-----VWRQADKYKVP 129 (693)
T ss_pred --------EECCeEEEEEeCCCcHHHHH--------HHHHHHHHcCEEEEEEECCCCcchhhHH-----HHHHHHHcCCC
Confidence 12456799999999754211 1233446678999999998765443321 23345556778
Q ss_pred CEEEEeCCCCCCCC
Q 022736 189 DVVILNKVDLVSPE 202 (293)
Q Consensus 189 ~iivlNK~D~~~~~ 202 (293)
.++++||+|+.+++
T Consensus 130 ~iv~vNK~D~~~~~ 143 (693)
T PRK00007 130 RIAFVNKMDRTGAD 143 (693)
T ss_pred EEEEEECCCCCCCC
Confidence 99999999998654
No 225
>PLN03126 Elongation factor Tu; Provisional
Probab=99.01 E-value=6.2e-10 Score=105.43 Aligned_cols=70 Identities=24% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~ 198 (293)
+..+.||||||..+. . .........+|.+++|||+......... ++.......+.+ .++++||+|+
T Consensus 143 ~~~i~liDtPGh~~f---~-----~~~~~g~~~aD~ailVVda~~G~~~qt~-----e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 143 NRHYAHVDCPGHADY---V-----KNMITGAAQMDGAILVVSGADGPMPQTK-----EHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CcEEEEEECCCHHHH---H-----HHHHHHHhhCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCCCeEEEEEecccc
Confidence 457899999996532 1 1223344578999999999865433221 123344445566 4678999999
Q ss_pred CCCC
Q 022736 199 VSPE 202 (293)
Q Consensus 199 ~~~~ 202 (293)
++.+
T Consensus 210 ~~~~ 213 (478)
T PLN03126 210 VDDE 213 (478)
T ss_pred cCHH
Confidence 8743
No 226
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.01 E-value=2.8e-09 Score=93.94 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=45.2
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
.+.++.++||||..+..... ......+|.+++|+|+.......... +.........|.++++||+|+
T Consensus 69 ~~~~i~liDTPG~~df~~~~--------~~~l~~aD~~IlVvda~~g~~~~~~~-----i~~~~~~~~~P~iivvNK~D~ 135 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDT--------YRTLTAVDSAVMVIDAAKGVEPQTRK-----LFEVCRLRGIPIITFINKLDR 135 (267)
T ss_pred CCEEEEEEECCCchHHHHHH--------HHHHHHCCEEEEEEECCCCccHHHHH-----HHHHHHhcCCCEEEEEECCcc
Confidence 45778999999976533211 12234689999999997643322110 122333446788999999998
Q ss_pred CCCC
Q 022736 199 VSPE 202 (293)
Q Consensus 199 ~~~~ 202 (293)
.+..
T Consensus 136 ~~a~ 139 (267)
T cd04169 136 EGRD 139 (267)
T ss_pred CCCC
Confidence 7653
No 227
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.00 E-value=6.3e-10 Score=103.80 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=62.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDL 198 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~ 198 (293)
+..+.||||||..+. .. ........+|.+++|||+......... +.......++.+ .++++||+|+
T Consensus 79 ~~~~~liDtPGh~~f---~~-----~~~~~~~~aD~allVVda~~G~~~qt~-----~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 KRKFIVADTPGHEQY---TR-----NMATGASTADLAVLLVDARKGVLEQTR-----RHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred CeEEEEEeCCCHHHH---HH-----HHHHHHhhCCEEEEEEECCCCCccccH-----HHHHHHHHcCCCcEEEEEEeccc
Confidence 457899999995432 11 122345678999999999765432211 012233444444 5679999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR 250 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~ 250 (293)
.+..+ ..++.+.+.++.+.... + +...+++++||.+|+|++.
T Consensus 146 ~~~~~--~~~~~i~~~~~~~~~~~-------~-~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 146 VDYDE--EVFENIKKDYLAFAEQL-------G-FRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ccchH--HHHHHHHHHHHHHHHHc-------C-CCCccEEEeecccCCCCcc
Confidence 86432 22334444443322110 0 1113578999999999875
No 228
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.99 E-value=2.7e-09 Score=88.95 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=61.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
.++.++||+|......... .....++.++++.|............ .+...+.+. ..+.++|.||+|+
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~--------~~~~~a~~~llv~~i~~~~s~~~~~~---~~~~~i~~~~~~~piilvgnK~Dl 117 (187)
T cd04129 49 VQLALWDTAGQEEYERLRP--------LSYSKAHVILIGFAVDTPDSLENVRT---KWIEEVRRYCPNVPVILVGLKKDL 117 (187)
T ss_pred EEEEEEECCCChhccccch--------hhcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEeeChhh
Confidence 3467999999643321111 11245677888888765432211100 012222222 3578999999998
Q ss_pred CCCCC--------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPER--------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~--------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.+... .....+......+.. ....++.+||++|.|++++..++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 118 RQDAVAKEEYRTQRFVPIQQGKRVAKEI--------------GAKKYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred hhCcccccccccCCcCCHHHHHHHHHHh--------------CCcEEEEccCCCCCCHHHHHHHHHHH
Confidence 54210 001112222222222 12356889999999999999888653
No 229
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.99 E-value=9.4e-10 Score=97.38 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=35.7
Q ss_pred cccccEEEEEcccc-hHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736 151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (293)
Q Consensus 151 ~~~d~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l 218 (293)
.+++++++++++.. .....+.. ....+.+ ..+.++|+||+|+++.++.......+.+.++..
T Consensus 113 ~rvh~~ly~i~~~~~~l~~~D~~-----~lk~l~~-~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~ 175 (276)
T cd01850 113 TRVHACLYFIEPTGHGLKPLDIE-----FMKRLSK-RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEH 175 (276)
T ss_pred CceEEEEEEEeCCCCCCCHHHHH-----HHHHHhc-cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHc
Confidence 36888999999864 22222210 1222222 467899999999987554323334444455544
No 230
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.98 E-value=6.3e-09 Score=86.04 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=63.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||+|..+...+... .....+++|+|.|.++......... .+...+.+. ..+.++|.||+|+
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~--------~~~~a~~~ilvyd~~~~~Sf~~~~~---~w~~~i~~~~~~~piilvgnK~Dl 117 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPL--------SYRGADVFVLAFSLISRASYENVLK---KWVPELRHYAPNVPIVLVGTKLDL 117 (176)
T ss_pred EEEEEEECCCCccccccchh--------hcCCCcEEEEEEEcCCHHHHHHHHH---HHHHHHHHhCCCCCEEEEEeChhh
Confidence 45779999997654333321 1246788999999876554322100 011112221 3467899999999
Q ss_pred CCCCC--------CcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPER--------SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~--------~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.+... +....++..+..+..+ ....+.+||++|.|++++-..+..
T Consensus 118 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--------------~~~~~E~SAk~~~nV~~~F~~~~~ 170 (176)
T cd04133 118 RDDKQYLADHPGASPITTAQGEELRKQIG--------------AAAYIECSSKTQQNVKAVFDAAIK 170 (176)
T ss_pred ccChhhhhhccCCCCCCHHHHHHHHHHcC--------------CCEEEECCCCcccCHHHHHHHHHH
Confidence 65320 0012233333333221 123678999999999988776654
No 231
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.97 E-value=3.6e-09 Score=99.66 Aligned_cols=112 Identities=14% Similarity=0.193 Sum_probs=68.8
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch-HHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLV 199 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~~ 199 (293)
.+.||||||..+ +. ..++.....+|.+++|||+... ...... ++......++.+ .++++||+|++
T Consensus 118 ~i~~IDtPGH~~---fi-----~~m~~g~~~~D~alLVVda~~g~~~~qT~-----ehl~i~~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 118 HVSFVDCPGHDI---LM-----ATMLNGAAVMDAALLLIAANESCPQPQTS-----EHLAAVEIMKLKHIIILQNKIDLV 184 (460)
T ss_pred eEeeeeCCCHHH---HH-----HHHHHHHhhCCEEEEEEECCCCccchhhH-----HHHHHHHHcCCCcEEEEEeccccc
Confidence 578999999432 22 2334455678999999999863 222111 122333444444 57899999998
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.++.....+++++.++... ....+++++||++|+|++.|.++|.+.
T Consensus 185 ~~~~~~~~~~ei~~~l~~~~------------~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 185 KEAQAQDQYEEIRNFVKGTI------------ADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred CHHHHHHHHHHHHHHHHhhc------------cCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 64422122233333333211 123578999999999999999998753
No 232
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.97 E-value=1.7e-08 Score=83.08 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=80.9
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcC-CCCcchhhhhhccCcceeeccchhHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+++++|++|+||||+...+... ..+.+++++..|+.. ......+.... ..++. -+.+....+..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~-~~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~ 70 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR-PAAIEQLRVLGEQVGVP----------VFEEGEGKDPVSI 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC-hHHHHHHHHhcccCCeE----------EEecCCCCCHHHH
Confidence 6789999999999999998764 457899999988753 11111111100 00100 0111111222222
Q ss_pred HHHHH--hhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 111 LEQLV--QRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 111 l~~l~--~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
+.+.+ ....+.+++||||+|... .......+. .+......+.+++|+|+......... .....++.+
T Consensus 71 ~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~---~l~~~~~~~~~~lVv~~~~~~~~~~~------~~~~~~~~~- 140 (173)
T cd03115 71 AKRAIEHAREENFDVVIVDTAGRLQIDENLMEELK---KIKRVVKPDEVLLVVDAMTGQDAVNQ------AKAFNEALG- 140 (173)
T ss_pred HHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHH---HHHhhcCCCeEEEEEECCCChHHHHH------HHHHHhhCC-
Confidence 22211 123578999999999653 222222211 11222347889999999654433221 122222333
Q ss_pred cCEEEEeCCCCCCCC
Q 022736 188 ADVVILNKVDLVSPE 202 (293)
Q Consensus 188 a~iivlNK~D~~~~~ 202 (293)
.+.+|+||.|.....
T Consensus 141 ~~~viltk~D~~~~~ 155 (173)
T cd03115 141 ITGVILTKLDGDARG 155 (173)
T ss_pred CCEEEEECCcCCCCc
Confidence 689999999976543
No 233
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.97 E-value=7.4e-09 Score=86.10 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=59.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+-|+||+|......+... ....++++++|.|.++......... .+...+.+. ..+.++|.||+|+
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~--------~~~~ad~~ilvyDit~~~Sf~~~~~---~w~~~i~~~~~~~piilVgNK~DL 121 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPL--------SYPDSDAVLICFDISRPETLDSVLK---KWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred EEEEEEECCCchhhHhhhhh--------hcCCCCEEEEEEECCCHHHHHHHHH---HHHHHHHHHCCCCCEEEEeEChhh
Confidence 45779999997543332221 1246788999999887544322100 011112221 3467899999998
Q ss_pred CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch-hhhhhhh
Q 022736 199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGL 254 (293)
Q Consensus 199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~-~~~l~~~ 254 (293)
.+.. ++....++..+..++++ ....+.+||++|+| ++++-..
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--------------~~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 122 RTDLTTLVELSNHRQTPVSYDQGANMAKQIG--------------AATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred hcChhhHHHHHhcCCCCCCHHHHHHHHHHcC--------------CCEEEECCcCCCCCCHHHHHHH
Confidence 5421 00012223333333222 12467899999998 8876544
No 234
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.3e-09 Score=97.00 Aligned_cols=172 Identities=21% Similarity=0.291 Sum_probs=92.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccC-C----------CCeEEEEEcC-----CCCccccchhhhhcCCCCcchhhhhhc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGK-H----------GKRIAVILNE-----FGEEIGVERAMINEGEGGALVEEWVEL 94 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~-~----------~~~vavv~~d-----~g~~~~~d~~~~~~~~~~~~~~~~~~l 94 (293)
..|.|.++|....||||||++|+... + ..-++++..+ +|++..+|...-..+-+. . --.+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~-F---G~af 132 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNK-F---GNAF 132 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhh-h---HHHH
Confidence 57999999999999999999999752 1 2233444432 122122221100000000 0 0011
Q ss_pred cCcceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHH--HHhhhcchhhcc-ccccccEEEEEcccchHHHHhh
Q 022736 95 ANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLES-AVRLDSIITVVDAKNLLFQIDK 171 (293)
Q Consensus 95 ~~gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~--~~~~~~~~~~~~-~~~~d~vi~vvDa~~~~~~~~~ 171 (293)
.|-..|..+.+.+.+ .+-||||||+...... .+.+=....++. ..++|.|+++.|+....- .+
T Consensus 133 lnRf~csqmp~~vLe------------~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI-sd- 198 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLE------------SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDI-SD- 198 (532)
T ss_pred HHHHHHhcCChhhhh------------heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccc-cH-
Confidence 123334444443333 3669999997653322 221111111111 147899999999964321 11
Q ss_pred hcccCCchHHHHHH---hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736 172 YRHLSSYPEAIHQI---AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (293)
Q Consensus 172 ~~~~~~~~~~~~qi---~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~ 225 (293)
++...+.++ +.-..||+||+|.++.++.......+...|..+-..+.+.
T Consensus 199 -----Ef~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWslgkv~nTpev~ 250 (532)
T KOG1954|consen 199 -----EFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVMNTPEVS 250 (532)
T ss_pred -----HHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhhhhhcCCCcce
Confidence 133344444 4567999999999998765555555666666555444443
No 235
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.96 E-value=5.3e-09 Score=90.27 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=44.7
Q ss_pred CCCEEEEecCCCCCc------HHHHHhh--hcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEE
Q 022736 120 RLDHILLETTGLANP------APLASVL--WLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVV 191 (293)
Q Consensus 120 ~~d~iiidt~G~~~~------~~~~~~~--~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ii 191 (293)
.+++.||||||+... ..+...+ +...++.. .-+.+++|+|+.......+.. .+...+.......++
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~--~~~IIL~Vvda~~d~~~~d~l----~ia~~ld~~~~rti~ 197 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK--EECLILAVTPANVDLANSDAL----KLAKEVDPQGERTIG 197 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC--ccCeEEEEEECCCCCCchhHH----HHHHHHHHcCCcEEE
Confidence 489999999998632 2221111 11122221 234789999987543322210 123344555678899
Q ss_pred EEeCCCCCCCC
Q 022736 192 ILNKVDLVSPE 202 (293)
Q Consensus 192 vlNK~D~~~~~ 202 (293)
|+||+|..+..
T Consensus 198 ViTK~D~~~~~ 208 (240)
T smart00053 198 VITKLDLMDEG 208 (240)
T ss_pred EEECCCCCCcc
Confidence 99999998754
No 236
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.96 E-value=3.5e-08 Score=90.14 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=91.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee--eccchh
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC--CTVKHS 106 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic--c~~~~~ 106 (293)
+..+++|+|+.|+||||++..|... ..+.+++++..|... .+.-..+... .+ ..||-. +....+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-iaAvEQLk~y----------ae-~lgipv~v~~d~~~ 307 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDY----------VK-TIGFEVIAVRDEAA 307 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHH----------hh-hcCCcEEecCCHHH
Confidence 3568999999999999999999764 457899999988753 1111111110 01 112222 223445
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
+..++..+.. ..++|+|||||+|-.. .......+ ...+. ....+.+++|+|+......... ....+..
T Consensus 308 L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL--~~~lk-~~~PdevlLVLsATtk~~d~~~------i~~~F~~- 376 (436)
T PRK11889 308 MTRALTYFKE-EARVDYILIDTAGKNYRASETVEEM--IETMG-QVEPDYICLTLSASMKSKDMIE------IITNFKD- 376 (436)
T ss_pred HHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHH--HHHHh-hcCCCeEEEEECCccChHHHHH------HHHHhcC-
Confidence 6666655432 2368999999999543 23323222 11121 2234567888998755443322 1222333
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
...+-+|+||.|-...- ..+.+.....+
T Consensus 377 ~~idglI~TKLDET~k~------G~iLni~~~~~ 404 (436)
T PRK11889 377 IHIDGIVFTKFDETASS------GELLKIPAVSS 404 (436)
T ss_pred CCCCEEEEEcccCCCCc------cHHHHHHHHHC
Confidence 24689999999976533 34444444443
No 237
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.96 E-value=5.2e-09 Score=88.30 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=62.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+-|+||+|......+...+ ....+++|+|+|.+...+..... .+...+.+. ..+.++|.||+|+
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~--------~~~ad~~ilV~D~t~~~S~~~i~----~w~~~i~~~~~~~piilvgNK~Dl 111 (200)
T smart00176 44 IRFNVWDTAGQEKFGGLRDGY--------YIQGQCAIIMFDVTARVTYKNVP----NWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred EEEEEEECCCchhhhhhhHHH--------hcCCCEEEEEEECCChHHHHHHH----HHHHHHHHhCCCCCEEEEEECccc
Confidence 457799999976544333222 14578899999998765432210 011112221 3478999999998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
..... ..+.+ ...+. + ...++.+||++|+|++++..|+..
T Consensus 112 ~~~~v---~~~~~-~~~~~-~--------------~~~~~e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 112 KDRKV---KAKSI-TFHRK-K--------------NLQYYDISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred ccccC---CHHHH-HHHHH-c--------------CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 64321 11221 11111 1 024578999999999999888864
No 238
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.95 E-value=6.6e-09 Score=86.07 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=58.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||+|......+... ....++++++|.|.++......... .+...+.+. ..+.++|.||+|+
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~--------~~~~a~~~ilvfdit~~~Sf~~~~~---~w~~~i~~~~~~~~iilVgnK~DL 117 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPL--------CYPDSDAVLICFDISRPETLDSVLK---KWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred EEEEEEECCCchhhhhcchh--------hcCCCCEEEEEEECCChhhHHHHHH---HHHHHHHHHCCCCCEEEEEEChhh
Confidence 45779999996433222211 1246788999999876544322100 012122221 3467888999998
Q ss_pred CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcch-hhhhhhhh
Q 022736 199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGLL 255 (293)
Q Consensus 199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~-~~~l~~~l 255 (293)
.+.. ++....++..+.-++++ ....+.+||++|++ ++++-..+
T Consensus 118 ~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~--------------~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 118 RTDLSTLMELSHQRQAPVSYEQGCAIAKQLG--------------AEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred hcChhHHHHHHhcCCCCCCHHHHHHHHHHhC--------------CCEEEECccCcCCcCHHHHHHHH
Confidence 6421 00011222222222221 12457899999995 87765443
No 239
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.95 E-value=8.1e-10 Score=90.22 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=39.2
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~ 196 (293)
..++.||||||+........... .. .....|.+++|+++.......+.. .+...........++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~-~~---~~~~~d~vi~V~~~~~~~~~~~~~----~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEIT-EE---YLPKADVVIFVVDANQDLTESDME----FLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHH-HH---HHSTTEEEEEEEETTSTGGGHHHH----HHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHH-HH---hhccCCEEEEEeccCcccchHHHH----HHHHHhcCCCCeEEEEEcCC
Confidence 46789999999865332221111 12 225778999999998754432211 02223333444578888984
No 240
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.95 E-value=1e-08 Score=88.34 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=60.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||+|......+.... ...++++++|.|.++......... .+...+.+. ..+.++|.||+|+
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~--------~~~ad~vIlVyDit~~~Sf~~~~~---~w~~~i~~~~~~~piilVgNK~DL 129 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLC--------YSDSDAVLLCFDISRPETVDSALK---KWKAEIMDYCPSTRILLIGCKTDL 129 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHH--------cCCCcEEEEEEECCChHHHHHHHH---HHHHHHHHhCCCCCEEEEEECccc
Confidence 457899999965433333221 246788999999987554322100 011122221 2457899999998
Q ss_pred CCCC----------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc-hhhhhhhhh
Q 022736 199 VSPE----------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLL 255 (293)
Q Consensus 199 ~~~~----------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~-~~~~l~~~l 255 (293)
.+.. .+....++..+..++++ ...++.+||++|+ +++++-..+
T Consensus 130 ~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~--------------~~~~~EtSAktg~~~V~e~F~~~ 183 (232)
T cd04174 130 RTDLSTLMELSNQKQAPISYEQGCALAKQLG--------------AEVYLECSAFTSEKSIHSIFRSA 183 (232)
T ss_pred ccccchhhhhccccCCcCCHHHHHHHHHHcC--------------CCEEEEccCCcCCcCHHHHHHHH
Confidence 5421 00012233333333222 1235789999997 787665443
No 241
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.1e-08 Score=90.77 Aligned_cols=146 Identities=20% Similarity=0.245 Sum_probs=85.8
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCC-CCccccchhhhhcCCCCcchhhhhhccCcceeec--c
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF-GEEIGVERAMINEGEGGALVEEWVELANGCICCT--V 103 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~-g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~ 103 (293)
..++-|++++|..|+||||.|-+|... ..|+++.+...|. -+ -.++. +-.++ -..||-+-+ .
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA-aAiEQ-L~~w~-----------er~gv~vI~~~~ 202 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA-AAIEQ-LEVWG-----------ERLGVPVISGKE 202 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH-HHHHH-HHHHH-----------HHhCCeEEccCC
Confidence 456778999999999999999999874 5689998888763 11 00110 00000 001111111 0
Q ss_pred ch----hHHHHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhcccccc-----ccEEEEEcccchHHHHhhhc
Q 022736 104 KH----SLVQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRL-----DSIITVVDAKNLLFQIDKYR 173 (293)
Q Consensus 104 ~~----~l~~~l~~l~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~-----d~vi~vvDa~~~~~~~~~~~ 173 (293)
.. -..+++.. ....++|++||||+| +.....+++.+. ...+-..+. +-+++++||..+.+.+..
T Consensus 203 G~DpAaVafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~--KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q-- 276 (340)
T COG0552 203 GADPAAVAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELK--KIVRVIKKDDPDAPHEILLVLDATTGQNALSQ-- 276 (340)
T ss_pred CCCcHHHHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHH--HHHHHhccccCCCCceEEEEEEcccChhHHHH--
Confidence 11 12333332 224689999999999 777777765431 111111122 237777899987765543
Q ss_pred ccCCchHHHHHHhccCEEEEeCCCC
Q 022736 174 HLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 174 ~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
...+...-.-+-++++|+|-
T Consensus 277 -----Ak~F~eav~l~GiIlTKlDg 296 (340)
T COG0552 277 -----AKIFNEAVGLDGIILTKLDG 296 (340)
T ss_pred -----HHHHHHhcCCceEEEEeccc
Confidence 23444444568999999994
No 242
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.94 E-value=2.1e-09 Score=94.37 Aligned_cols=95 Identities=23% Similarity=0.181 Sum_probs=62.2
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
..-..++++|||++|||||+|+|. +.+..+-..+|.+-..+... .
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LT----nt~seva~y~FTTl~~VPG~--------------l----------------- 105 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLT----NTKSEVADYPFTTLEPVPGM--------------L----------------- 105 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHh----CCCccccccCceecccccce--------------E-----------------
Confidence 345569999999999999999999 44444445555431111110 0
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHH
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF 167 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~ 167 (293)
...+.++-++|+||+.+.+....... ...+.....+|.|++|+|+.....
T Consensus 106 -------~Y~ga~IQild~Pgii~gas~g~grG-~~vlsv~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 106 -------EYKGAQIQLLDLPGIIEGASSGRGRG-RQVLSVARNADLIIIVLDVFEDPH 155 (365)
T ss_pred -------eecCceEEEEcCcccccCcccCCCCc-ceeeeeeccCCEEEEEEecCCChh
Confidence 13556788999999877655443211 233556678999999999986544
No 243
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.94 E-value=1.5e-08 Score=82.16 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=69.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-ccCEEEEeCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVDL 198 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a~iivlNK~D~ 198 (293)
+...-+++|||.....-+++.+. ......|++||++........ .....+.... .+.+|.+||.|+
T Consensus 67 ~~~v~LfgtPGq~RF~fm~~~l~--------~ga~gaivlVDss~~~~~~a~-----~ii~f~~~~~~ip~vVa~NK~DL 133 (187)
T COG2229 67 DTGVHLFGTPGQERFKFMWEILS--------RGAVGAIVLVDSSRPITFHAE-----EIIDFLTSRNPIPVVVAINKQDL 133 (187)
T ss_pred cceEEEecCCCcHHHHHHHHHHh--------CCcceEEEEEecCCCcchHHH-----HHHHHHhhccCCCEEEEeecccc
Confidence 35678999999876554444332 236778999999875543110 0122222223 578999999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
.++. ..+.+++.+..-+-. .+++.+++..+++..+....+..
T Consensus 134 ~~a~----ppe~i~e~l~~~~~~-------------~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 134 FDAL----PPEKIREALKLELLS-------------VPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred CCCC----CHHHHHHHHHhccCC-------------CceeeeecccchhHHHHHHHHHh
Confidence 8875 457888887755411 35677888888887766555543
No 244
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.94 E-value=2.7e-09 Score=86.58 Aligned_cols=104 Identities=10% Similarity=0.044 Sum_probs=58.6
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH----hccCEEEEeCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI----AFADVVILNKVD 197 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi----~~a~iivlNK~D 197 (293)
.+.|+||+|..... . ....+++++|.|.++......... +...+.+. ..|.++|.||.|
T Consensus 48 ~l~i~D~~g~~~~~-~------------~~~~~~~ilv~d~~~~~sf~~~~~----~~~~i~~~~~~~~~piilvgnK~D 110 (158)
T cd04103 48 LLLIRDEGGAPDAQ-F------------ASWVDAVIFVFSLENEASFQTVYN----LYHQLSSYRNISEIPLILVGTQDA 110 (158)
T ss_pred EEEEEECCCCCchh-H------------HhcCCEEEEEEECCCHHHHHHHHH----HHHHHHHhcCCCCCCEEEEeeHHH
Confidence 36689999985421 1 134678999999887654332110 11122222 246789999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+.....+....+..++..++... ..++.+||+++.|++++-.++.
T Consensus 111 l~~~~~~~v~~~~~~~~~~~~~~--------------~~~~e~SAk~~~~i~~~f~~~~ 155 (158)
T cd04103 111 ISESNPRVIDDARARQLCADMKR--------------CSYYETCATYGLNVERVFQEAA 155 (158)
T ss_pred hhhcCCcccCHHHHHHHHHHhCC--------------CcEEEEecCCCCCHHHHHHHHH
Confidence 85321111122222232222211 2467899999999998876654
No 245
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.1e-09 Score=86.07 Aligned_cols=163 Identities=19% Similarity=0.136 Sum_probs=97.3
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
++|.|.-|||||||+.++-... +..+|. . +...+ -.++-+++|-+|-.
T Consensus 20 vlIlgldnAGKttfLe~~Kt~~--------~~~~~~-l--~~~ki---------~~tvgLnig~i~v~------------ 67 (197)
T KOG0076|consen 20 VLILGLDNAGKTTFLEALKTDF--------SKAYGG-L--NPSKI---------TPTVGLNIGTIEVC------------ 67 (197)
T ss_pred heeeccccCCchhHHHHHHHHH--------HhhhcC-C--CHHHe---------ecccceeecceeec------------
Confidence 6789999999999999986431 111121 1 11111 12334455545421
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEe
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILN 194 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlN 194 (293)
+-...++|..|.-...++...+. ..+.++++++||.+............+..+--.+-+.|.++.+|
T Consensus 68 -----~~~l~fwdlgGQe~lrSlw~~yY--------~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 -----NAPLSFWDLGGQESLRSLWKKYY--------WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred -----cceeEEEEcCChHHHHHHHHHHH--------HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 12357999999877666665443 45678999999987443222111111111111333567899999
Q ss_pred CCCCCCCCCCcchHHHHHHHHH--hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIH--EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~--~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
|-|+-+..+ ...+..... ..+|.. --.+.++|+.+|+|+.+-..|+..
T Consensus 135 kqd~q~~~~----~~El~~~~~~~e~~~~r-----------d~~~~pvSal~gegv~egi~w~v~ 184 (197)
T KOG0076|consen 135 KQDLQNAME----AAELDGVFGLAELIPRR-----------DNPFQPVSALTGEGVKEGIEWLVK 184 (197)
T ss_pred hhhhhhhhh----HHHHHHHhhhhhhcCCc-----------cCccccchhhhcccHHHHHHHHHH
Confidence 999887653 344444443 333321 135679999999999998888864
No 246
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.9e-09 Score=89.22 Aligned_cols=138 Identities=20% Similarity=0.273 Sum_probs=86.5
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
..+-++++|+.+||||+|+-.|... ..+..+.+-++.+ +..+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~g--s~~~TvtSiepn~--a~~r---------------------------------- 78 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITG--SHRGTVTSIEPNE--ATYR---------------------------------- 78 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcC--CccCeeeeeccce--eeEe----------------------------------
Confidence 3468999999999999999999865 2333455555543 0000
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-H----HH
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-H----QI 185 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~----qi 185 (293)
.+....-+||.||-.........+ +.+..++..+|||||+..+.........+ +...+ . .-
T Consensus 79 -------~gs~~~~LVD~PGH~rlR~kl~e~-----~~~~~~akaiVFVVDSa~f~k~vrdvaef--Lydil~~~~~~~~ 144 (238)
T KOG0090|consen 79 -------LGSENVTLVDLPGHSRLRRKLLEY-----LKHNYSAKAIVFVVDSATFLKNVRDVAEF--LYDILLDSRVKKN 144 (238)
T ss_pred -------ecCcceEEEeCCCcHHHHHHHHHH-----ccccccceeEEEEEeccccchhhHHHHHH--HHHHHHhhccccC
Confidence 122235699999977665555333 34446788899999999877655443111 01111 1 11
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcC
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINS 220 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp 220 (293)
..+.+|+.||.|+..+...+....++++.|+.++.
T Consensus 145 ~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~ 179 (238)
T KOG0090|consen 145 KPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRE 179 (238)
T ss_pred CCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHH
Confidence 23568888999998776544556666666665553
No 247
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.93 E-value=1.5e-09 Score=102.11 Aligned_cols=114 Identities=14% Similarity=0.288 Sum_probs=60.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-cCEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~-a~iivlNK~D 197 (293)
++..+.|+||||..+ +. ..+.......|.+++|+|+......... .............. +.++++||+|
T Consensus 83 ~~~~i~iiDtpGh~~---f~-----~~~~~~~~~aD~~ilVvDa~~~~~~~~~--~t~~~~~~~~~~~~~~iIVviNK~D 152 (426)
T TIGR00483 83 DKYEVTIVDCPGHRD---FI-----KNMITGASQADAAVLVVAVGDGEFEVQP--QTREHAFLARTLGINQLIVAINKMD 152 (426)
T ss_pred CCeEEEEEECCCHHH---HH-----HHHHhhhhhCCEEEEEEECCCCCcccCC--chHHHHHHHHHcCCCeEEEEEEChh
Confidence 356789999999532 22 1223334678999999999865211000 00001112233333 4677999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR 250 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~ 250 (293)
+.+..+ .....+.+.++.+...... ......++++||++|.|+.+
T Consensus 153 l~~~~~--~~~~~~~~ei~~~~~~~g~------~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 153 SVNYDE--EEFEAIKKEVSNLIKKVGY------NPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred ccCccH--HHHHHHHHHHHHHHHHcCC------CcccceEEEeeccccccccc
Confidence 975321 1222333333322111000 00123578999999999865
No 248
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.92 E-value=3.2e-08 Score=87.38 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=81.8
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchh
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
.+..+++++|++|+||||++..|... ..|.+++++..|... .+-...+-.. ...++. +.....+ ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r-~~a~~ql~~~~~~~~i~---~~~~~~~---~dp~~~ 142 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR-AAAIEQLEEWAKRLGVD---VIKQKEG---ADPAAV 142 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC-HHHHHHHHHHHHhCCeE---EEeCCCC---CCHHHH
Confidence 44678999999999999999999763 457899999988632 1111111000 000000 0000000 000011
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhh-cchhhc--cccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLANP-APLASVLW-LDDQLE--SAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~-~~~~~~--~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (293)
....+.... ..++|++||||||.... ......+. +..... .....+.+++|+|+......... ...+
T Consensus 143 ~~~~l~~~~--~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~-------~~~f 213 (272)
T TIGR00064 143 AFDAIQKAK--ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQ-------AKVF 213 (272)
T ss_pred HHHHHHHHH--HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHH-------HHHH
Confidence 122233222 36799999999996542 22221110 000000 01226788999999765443321 1222
Q ss_pred HHHhccCEEEEeCCCCCCC
Q 022736 183 HQIAFADVVILNKVDLVSP 201 (293)
Q Consensus 183 ~qi~~a~iivlNK~D~~~~ 201 (293)
.+.-..+-+|+||.|....
T Consensus 214 ~~~~~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 214 NEAVGLTGIILTKLDGTAK 232 (272)
T ss_pred HhhCCCCEEEEEccCCCCC
Confidence 2223478999999997644
No 249
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.92 E-value=2.6e-09 Score=96.16 Aligned_cols=42 Identities=29% Similarity=0.311 Sum_probs=28.4
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~ 163 (293)
..+-++||||+.........+ ....+.....+|.+++|+|+.
T Consensus 69 v~i~l~D~aGlv~ga~~~~gl-g~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGL-GNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ceEEEEECCCCCCCccchhhH-HHHHHHHHHHCCEEEEEEeCC
Confidence 457899999985443222221 123455668899999999996
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.91 E-value=1e-08 Score=96.62 Aligned_cols=116 Identities=14% Similarity=0.190 Sum_probs=64.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH--HhhhcccCCchHHHHHHhccC-EEEEeC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFAD-VVILNK 195 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~qi~~a~-iivlNK 195 (293)
++..+.||||||..+. . .........+|.+++|||+...... ......-.++..+...++.+. ++++||
T Consensus 83 ~~~~i~lIDtPGh~~f---~-----~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNK 154 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDF---I-----KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINK 154 (446)
T ss_pred CCeEEEEEECCChHHH---H-----HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEc
Confidence 4567899999995432 1 2223445678999999999865310 000000011233445566665 589999
Q ss_pred CCCCC--CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736 196 VDLVS--PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR 250 (293)
Q Consensus 196 ~D~~~--~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~ 250 (293)
+|... ..+ ..++++.+.++.+....... .....++++|+++|+|+.+
T Consensus 155 mD~~~~~~~~--~~~~~i~~~i~~~l~~~g~~------~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQ--ERYDEIKKEVSAYLKKVGYN------PEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhH--HHHHHHHHHHHHHHHhcCCC------cccceEEEeecccCCCccc
Confidence 99532 111 23455555555432211000 0114578999999999853
No 251
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.90 E-value=3.6e-09 Score=92.12 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
...|+++|.+|+|||||+|+|+.
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg 53 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFG 53 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 45688899999999999999993
No 252
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.90 E-value=2.2e-08 Score=93.61 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=82.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceee-ccchh
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC-TVKHS 106 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc-~~~~~ 106 (293)
.+..+++++|.+|+||||++..|... ..|.+++++..|... ......+-..+ ...+-.+.. ....+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R-~aa~eQL~~la----------~~~gvp~~~~~~~~d 161 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR-PAAYDQLKQLA----------EKIGVPFYGDPDNKD 161 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC-HHHHHHHHHHH----------HHcCCcEEecCCccC
Confidence 34668889999999999999999764 457899999988753 11110000000 000000111 11223
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
....+.+.+......|+|||||+|... .....+.+. .+......+.+++|+|+......... ...+.+.
T Consensus 162 ~~~i~~~al~~~~~~DvVIIDTAGr~~~d~~lm~El~---~l~~~~~pdevlLVvda~~gq~av~~-------a~~F~~~ 231 (437)
T PRK00771 162 AVEIAKEGLEKFKKADVIIVDTAGRHALEEDLIEEMK---EIKEAVKPDEVLLVIDATIGQQAKNQ-------AKAFHEA 231 (437)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCcccchHHHHHHHH---HHHHHhcccceeEEEeccccHHHHHH-------HHHHHhc
Confidence 333333333322345999999999544 333333221 12233456789999999775322211 1122221
Q ss_pred hccCEEEEeCCCCCC
Q 022736 186 AFADVVILNKVDLVS 200 (293)
Q Consensus 186 ~~a~iivlNK~D~~~ 200 (293)
-..+-+|+||.|...
T Consensus 232 l~i~gvIlTKlD~~a 246 (437)
T PRK00771 232 VGIGGIIITKLDGTA 246 (437)
T ss_pred CCCCEEEEecccCCC
Confidence 224789999999654
No 253
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=4.7e-09 Score=97.92 Aligned_cols=165 Identities=19% Similarity=0.169 Sum_probs=102.9
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
..|.|++.++|----|||||+-++-+. .+...|.|. ++...-.. .++++.
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t------~Va~~EaGG---ITQhIGA~---------~v~~~~------------ 51 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKT------NVAAGEAGG---ITQHIGAY---------QVPLDV------------ 51 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcC------ccccccCCc---eeeEeeeE---------EEEecc------------
Confidence 358999999999999999999999642 344455542 22111000 000000
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
...+.+.||||||-.-...+- -+...-.|.+++|||+.....+.... .....+....|
T Consensus 52 ---------~~~~~itFiDTPGHeAFt~mR--------aRGa~vtDIaILVVa~dDGv~pQTiE-----AI~hak~a~vP 109 (509)
T COG0532 52 ---------IKIPGITFIDTPGHEAFTAMR--------ARGASVTDIAILVVAADDGVMPQTIE-----AINHAKAAGVP 109 (509)
T ss_pred ---------CCCceEEEEcCCcHHHHHHHH--------hcCCccccEEEEEEEccCCcchhHHH-----HHHHHHHCCCC
Confidence 023568899999954322111 12224468899999998776554321 23344556678
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.++++||+|+.+.+ ..++...+.+..=.+ ..++. --.++++||++|+|+++|...+.
T Consensus 110 ~iVAiNKiDk~~~n-----p~~v~~el~~~gl~~----E~~gg--~v~~VpvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 110 IVVAINKIDKPEAN-----PDKVKQELQEYGLVP----EEWGG--DVIFVPVSAKTGEGIDELLELIL 166 (509)
T ss_pred EEEEEecccCCCCC-----HHHHHHHHHHcCCCH----hhcCC--ceEEEEeeccCCCCHHHHHHHHH
Confidence 99999999999653 567776666542111 11221 14578999999999999987663
No 254
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.88 E-value=4e-08 Score=83.69 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=58.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~iivlNK 195 (293)
..+.++||+|......+...+. ...+.+++++|.......... ..+...+ ..+.+++.||
T Consensus 58 i~i~~~Dt~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~-------~~~~~~i~~~~~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQEKFGGLRDGYY--------IKGQCAIIMFDVTSRITYKNV-------PNWHRDIVRVCENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCchhhhhhhHHHh--------ccCCEEEEEEECcCHHHHHHH-------HHHHHHHHHhCCCCCEEEEEEC
Confidence 4567999999654433322211 245778999998765443211 1122111 2456788999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+|+.+... . .......+..+ ..++.+|+++|.|+++...++..
T Consensus 123 ~Dl~~~~~---~-~~~~~~~~~~~---------------~~~~e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 123 VDVKDRQV---K-ARQITFHRKKN---------------LQYYDISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred ccCccccC---C-HHHHHHHHHcC---------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence 99864321 1 11112222111 23578899999999887776654
No 255
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.85 E-value=3.6e-08 Score=90.16 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=85.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEEcCCCCccccchhhhhcC-CCCcchhhhhhccCcceeeccchh
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~---~~~-~~vavv~~d~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
-.+++++|++|+||||++.+|... ..| .+++++..|.-. .+.-..+-..+ .-++.+ .......+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R-~ga~EqL~~~a~~~gv~~----------~~~~~~~~ 205 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR-IGGHEQLRIFGKILGVPV----------HAVKDGGD 205 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc-ccHHHHHHHHHHHcCCce----------EecCCccc
Confidence 458999999999999999999864 234 589998877642 11111110000 000000 00112234
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
+...+.++ .+.+++||||+|........ +.+. .+........+++|+++......+.. ....+...
T Consensus 206 l~~~l~~l----~~~DlVLIDTaG~~~~d~~l~e~La---~L~~~~~~~~~lLVLsAts~~~~l~e------vi~~f~~~ 272 (374)
T PRK14722 206 LQLALAEL----RNKHMVLIDTIGMSQRDRTVSDQIA---MLHGADTPVQRLLLLNATSHGDTLNE------VVQAYRSA 272 (374)
T ss_pred HHHHHHHh----cCCCEEEEcCCCCCcccHHHHHHHH---HHhccCCCCeEEEEecCccChHHHHH------HHHHHHHh
Confidence 54444433 45799999999976533222 2111 12122233356889999876655443 12223322
Q ss_pred h--------ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736 186 A--------FADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (293)
Q Consensus 186 ~--------~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l 218 (293)
. ..+-+|+||.|-... +-.+.+.+...
T Consensus 273 ~~~p~~~~~~~~~~I~TKlDEt~~------~G~~l~~~~~~ 307 (374)
T PRK14722 273 AGQPKAALPDLAGCILTKLDEASN------LGGVLDTVIRY 307 (374)
T ss_pred hcccccccCCCCEEEEeccccCCC------ccHHHHHHHHH
Confidence 1 257899999997653 24555555444
No 256
>PTZ00416 elongation factor 2; Provisional
Probab=98.84 E-value=3.6e-09 Score=106.87 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=76.1
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.++.-|+|+|..++|||||+++|+.... .+-..+.|.+...|....+. +.-+.+..+++.+........
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g----~i~~~~~g~~~~~D~~~~E~-------~rgiti~~~~~~~~~~~~~~~ 85 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAG----IISSKNAGDARFTDTRADEQ-------ERGITIKSTGISLYYEHDLED 85 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcC----CcccccCCceeecccchhhH-------hhcceeeccceEEEeeccccc
Confidence 3566899999999999999999996321 01111223211122221111 111222233332211100000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
.....+..+.|+||||..+... ........+|++|+|+|+.......... +...+.+...+.
T Consensus 86 -----~~~~~~~~i~liDtPG~~~f~~--------~~~~al~~~D~ailVvda~~g~~~~t~~-----~~~~~~~~~~p~ 147 (836)
T PTZ00416 86 -----GDDKQPFLINLIDSPGHVDFSS--------EVTAALRVTDGALVVVDCVEGVCVQTET-----VLRQALQERIRP 147 (836)
T ss_pred -----ccCCCceEEEEEcCCCHHhHHH--------HHHHHHhcCCeEEEEEECCCCcCccHHH-----HHHHHHHcCCCE
Confidence 0011245688999999876321 2234456789999999998754433221 222333345688
Q ss_pred EEEEeCCCCC
Q 022736 190 VVILNKVDLV 199 (293)
Q Consensus 190 iivlNK~D~~ 199 (293)
++++||+|+.
T Consensus 148 iv~iNK~D~~ 157 (836)
T PTZ00416 148 VLFINKVDRA 157 (836)
T ss_pred EEEEEChhhh
Confidence 9999999987
No 257
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.84 E-value=2.4e-08 Score=88.74 Aligned_cols=129 Identities=21% Similarity=0.275 Sum_probs=71.4
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.+...|+++|.+|+||||++|+|+ |.+++.++...+++.... |.+.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIl----G~~v~~vs~f~s~t~~~~------------------------~~~~------ 81 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSII----GERIATVSAFQSEGLRPM------------------------MVSR------ 81 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCcceeEE------------------------EEEE------
Confidence 346678999999999999999999 666655544333211000 0000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhh--cchhhccccccccEEEE--EcccchHHHHhhhcccCCchHHH-HH
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLW--LDDQLESAVRLDSIITV--VDAKNLLFQIDKYRHLSSYPEAI-HQ 184 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~--~~~~~~~~~~~d~vi~v--vDa~~~~~~~~~~~~~~~~~~~~-~q 184 (293)
...+..+.||||||+.+.....+... ...++ ....+|.+++| +|...+....... +..+...+ ..
T Consensus 82 -------~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l-~~~g~DvVLyV~rLD~~R~~~~Dkql--Lk~Iqe~FG~~ 151 (313)
T TIGR00991 82 -------TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL-LGKTIDVLLYVDRLDAYRVDTLDGQV--IRAITDSFGKD 151 (313)
T ss_pred -------EECCeEEEEEECCCCCchHHHHHHHHHHHHHHh-hcCCCCEEEEEeccCcccCCHHHHHH--HHHHHHHhhhh
Confidence 01345789999999988643332211 01111 12368889999 4544332211110 00011111 33
Q ss_pred HhccCEEEEeCCCCCCCC
Q 022736 185 IAFADVVILNKVDLVSPE 202 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~ 202 (293)
+-...++++|++|..+++
T Consensus 152 iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 152 IWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred hhccEEEEEECCccCCCC
Confidence 345679999999987543
No 258
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.83 E-value=7.1e-08 Score=77.93 Aligned_cols=106 Identities=20% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hccCEEEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFADVVILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a~iivlNK~D 197 (293)
..+-|+|++|..........+ ....+.++++.|..+....... . .+...+... ..+.+++.||+|
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~--------~~~~~~~ii~fd~~~~~S~~~~-~---~~~~~i~~~~~~~~~iivvg~K~D 115 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIF--------YRNSDAIIIVFDVTDEESFENL-K---KWLEEIQKYKPEDIPIIVVGNKSD 115 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHH--------HTTESEEEEEEETTBHHHHHTH-H---HHHHHHHHHSTTTSEEEEEEETTT
T ss_pred ccccccccccccccccccccc--------cccccccccccccccccccccc-c---cccccccccccccccceeeecccc
Confidence 457799999965443333222 2467889999998775443221 1 122222211 246788889999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+.+..+ ...++.++..+..+ . ..+.+|++++.++.++...+
T Consensus 116 ~~~~~~--v~~~~~~~~~~~~~--~-------------~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 116 LSDERE--VSVEEAQEFAKELG--V-------------PYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp GGGGSS--SCHHHHHHHHHHTT--S-------------EEEEEBTTTTTTHHHHHHHH
T ss_pred cccccc--chhhHHHHHHHHhC--C-------------EEEEEECCCCCCHHHHHHHH
Confidence 886443 24456666666554 2 35678999999988765433
No 259
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.83 E-value=7.4e-08 Score=87.67 Aligned_cols=147 Identities=17% Similarity=0.150 Sum_probs=84.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcC-CCCcchhhhhhccCcceeeccchh
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~-~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
.+..+++++|+.|+||||++..|... ..+.+++++..|+.. .+.-..+-..+ ..++ ....+....+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR-~gAveQLk~yae~lgv----------pv~~~~dp~d 272 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR-SGAVEQFQGYADKLDV----------ELIVATSPAE 272 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC-ccHHHHHHHHhhcCCC----------CEEecCCHHH
Confidence 34678999999999999999999763 457899999998753 21111111110 0010 1112234556
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH-
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ- 184 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q- 184 (293)
+..++..+.. ..+.|+|||||+|.... ......+ .. +......+.+++|+++..-..... ..+++
T Consensus 273 L~~al~~l~~-~~~~D~VLIDTAGr~~~d~~~l~EL--~~-l~~~~~p~~~~LVLsag~~~~d~~---------~i~~~f 339 (407)
T PRK12726 273 LEEAVQYMTY-VNCVDHILIDTVGRNYLAEESVSEI--SA-YTDVVHPDLTCFTFSSGMKSADVM---------TILPKL 339 (407)
T ss_pred HHHHHHHHHh-cCCCCEEEEECCCCCccCHHHHHHH--HH-HhhccCCceEEEECCCcccHHHHH---------HHHHhc
Confidence 7666665532 24689999999996432 2222221 11 112234455677887753332221 11111
Q ss_pred -HhccCEEEEeCCCCCC
Q 022736 185 -IAFADVVILNKVDLVS 200 (293)
Q Consensus 185 -i~~a~iivlNK~D~~~ 200 (293)
.-..+-+|+||.|-..
T Consensus 340 ~~l~i~glI~TKLDET~ 356 (407)
T PRK12726 340 AEIPIDGFIITKMDETT 356 (407)
T ss_pred CcCCCCEEEEEcccCCC
Confidence 1235899999999764
No 260
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.83 E-value=2.3e-09 Score=83.50 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=90.8
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
+.++|.-+||||||.|.+.+.+ ...|.+-+++. .+.+++.||+.|
T Consensus 23 l~lvGLq~sGKtt~Vn~ia~g~-------~~edmiptvGf---------------nmrk~tkgnvti------------- 67 (186)
T KOG0075|consen 23 LSLVGLQNSGKTTLVNVIARGQ-------YLEDMIPTVGF---------------NMRKVTKGNVTI------------- 67 (186)
T ss_pred EEEEeeccCCcceEEEEEeecc-------chhhhcccccc---------------eeEEeccCceEE-------------
Confidence 4568999999999999887521 01111111111 234455566644
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhh-hcccCCchHHHHHHhccCEEEE
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDK-YRHLSSYPEAIHQIAFADVVIL 193 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~-~~~~~~~~~~~~qi~~a~iivl 193 (293)
.+.|.+|.-......+-+. ..++.++++|||.... .+.. ..++......-+-.+.|.+++-
T Consensus 68 ---------klwD~gGq~rfrsmWeryc--------R~v~aivY~VDaad~~-k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 68 ---------KLWDLGGQPRFRSMWERYC--------RGVSAIVYVVDAADPD-KLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred ---------EEEecCCCccHHHHHHHHh--------hcCcEEEEEeecCCcc-cchhhHHHHHHHhcchhhcCCcEEEec
Confidence 6999999877666665443 4678899999998622 1111 0000000111122356788888
Q ss_pred eCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchh--hcccccCCcchhhhhhhhhhhhc
Q 022736 194 NKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSE--VLNCRAYDATHVTRLEGLLEEHQ 259 (293)
Q Consensus 194 NK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~--i~~~sa~~~~~~~~l~~~l~~~~ 259 (293)
||.|+.++-. ... .+..++-. .+ .-.+ -|.+|++...+++...+|+.+|.
T Consensus 130 nK~d~~~AL~----~~~---li~rmgL~-si--------tdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 130 NKIDLPGALS----KIA---LIERMGLS-SI--------TDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred ccccCccccc----HHH---HHHHhCcc-cc--------ccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 9999877542 122 23333211 11 1112 26789999999999999998764
No 261
>PRK10867 signal recognition particle protein; Provisional
Probab=98.82 E-value=7.2e-08 Score=90.01 Aligned_cols=152 Identities=21% Similarity=0.227 Sum_probs=80.3
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccch
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKH 105 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~-~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~ 105 (293)
.+..+++++|++||||||++..|... .. |.+++++..|.-. ...-..+-.. ...++.+ . ..+ ......
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R-~aa~eQL~~~a~~~gv~v---~--~~~--~~~dp~ 169 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR-PAAIEQLKTLGEQIGVPV---F--PSG--DGQDPV 169 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc-hHHHHHHHHHHhhcCCeE---E--ecC--CCCCHH
Confidence 34568889999999999999888763 34 8899999998643 1111111000 0011100 0 000 000111
Q ss_pred hHHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 106 SLVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 106 ~l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
.+........ ...++|++||||+|-.. .......+. .+......+.+++|+|+......... ...+.+
T Consensus 170 ~i~~~a~~~a-~~~~~DvVIIDTaGrl~~d~~lm~eL~---~i~~~v~p~evllVlda~~gq~av~~-------a~~F~~ 238 (433)
T PRK10867 170 DIAKAALEEA-KENGYDVVIVDTAGRLHIDEELMDELK---AIKAAVNPDEILLVVDAMTGQDAVNT-------AKAFNE 238 (433)
T ss_pred HHHHHHHHHH-HhcCCCEEEEeCCCCcccCHHHHHHHH---HHHHhhCCCeEEEEEecccHHHHHHH-------HHHHHh
Confidence 2222111112 23578999999999543 333333221 12223456678999999764332221 122222
Q ss_pred HhccCEEEEeCCCCCC
Q 022736 185 IAFADVVILNKVDLVS 200 (293)
Q Consensus 185 i~~a~iivlNK~D~~~ 200 (293)
.-..+-+|+||.|...
T Consensus 239 ~~~i~giIlTKlD~~~ 254 (433)
T PRK10867 239 ALGLTGVILTKLDGDA 254 (433)
T ss_pred hCCCCEEEEeCccCcc
Confidence 1234689999999643
No 262
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=9.1e-09 Score=95.78 Aligned_cols=166 Identities=20% Similarity=0.242 Sum_probs=98.8
Q ss_pred cCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccch
Q 022736 26 ENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH 105 (293)
Q Consensus 26 ~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~ 105 (293)
..-..|.||+-|+|---=|||||+.+|-. .+ |...+.|. |+..+ |.+ .+.++
T Consensus 147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRk----s~--VAA~E~GG---ITQhI------GAF---~V~~p---------- 198 (683)
T KOG1145|consen 147 KLLEPRPPVVTIMGHVDHGKTTLLDALRK----SS--VAAGEAGG---ITQHI------GAF---TVTLP---------- 198 (683)
T ss_pred hhcCCCCCeEEEeecccCChhhHHHHHhh----Cc--eehhhcCC---cccee------ceE---EEecC----------
Confidence 33457999999999999999999999973 22 33444442 22110 000 01111
Q ss_pred hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH
Q 022736 106 SLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI 185 (293)
Q Consensus 106 ~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi 185 (293)
.+-.+.|+||||-+-...+- -+...-.|.|++||-+.....+.... ........
T Consensus 199 -------------~G~~iTFLDTPGHaAF~aMR--------aRGA~vtDIvVLVVAadDGVmpQT~E-----aIkhAk~A 252 (683)
T KOG1145|consen 199 -------------SGKSITFLDTPGHAAFSAMR--------ARGANVTDIVVLVVAADDGVMPQTLE-----AIKHAKSA 252 (683)
T ss_pred -------------CCCEEEEecCCcHHHHHHHH--------hccCccccEEEEEEEccCCccHhHHH-----HHHHHHhc
Confidence 22457899999965433222 12334568899999887665443211 12222333
Q ss_pred hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 186 AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
..|.++.+||+|...+. .+++.+.|-... -.++..-|. -.++++||++|+|++.|.+.+.
T Consensus 253 ~VpiVvAinKiDkp~a~-----pekv~~eL~~~g---i~~E~~GGd---VQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 253 NVPIVVAINKIDKPGAN-----PEKVKRELLSQG---IVVEDLGGD---VQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred CCCEEEEEeccCCCCCC-----HHHHHHHHHHcC---ccHHHcCCc---eeEEEeecccCCChHHHHHHHH
Confidence 45789999999987543 455555443221 112222222 3468999999999999887653
No 263
>PRK13351 elongation factor G; Reviewed
Probab=98.82 E-value=4e-08 Score=97.78 Aligned_cols=70 Identities=19% Similarity=0.177 Sum_probs=45.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
.+..+.||||||..+...... .....+|++++|+|+.......... ....+.+...+.++++||+|+
T Consensus 71 ~~~~i~liDtPG~~df~~~~~--------~~l~~aD~~ilVvd~~~~~~~~~~~-----~~~~~~~~~~p~iiviNK~D~ 137 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVE--------RSLRVLDGAVVVFDAVTGVQPQTET-----VWRQADRYGIPRLIFINKMDR 137 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHH--------HHHHhCCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCCEEEEEECCCC
Confidence 346789999999865433221 2235678999999997653322110 122334456789999999998
Q ss_pred CCC
Q 022736 199 VSP 201 (293)
Q Consensus 199 ~~~ 201 (293)
...
T Consensus 138 ~~~ 140 (687)
T PRK13351 138 VGA 140 (687)
T ss_pred CCC
Confidence 865
No 264
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.81 E-value=5.5e-09 Score=91.94 Aligned_cols=101 Identities=21% Similarity=0.157 Sum_probs=60.1
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
++|+|+||||||||+|+|. +.++ .+.+.+++|+......+.- + +.-.+.|..+
T Consensus 1 igivG~PN~GKSTLfn~Lt----~~~~-~~~n~pftTi~p~~g~v~v-------------~---------d~r~~~l~~~ 53 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT----KAGA-EAANYPFCTIEPNVGIVPV-------------P---------DERLDKLAEI 53 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh----CCCC-ccccccccchhceeeeEEe-------------c---------cchhhhHHHH
Confidence 4789999999999999999 5554 5666677633222111110 0 0001112222
Q ss_pred Hhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736 115 VQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (293)
Q Consensus 115 ~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~ 163 (293)
... .-..++.++|+||+.........+. ...+....++|.+++|||+.
T Consensus 54 ~~~~k~~~~~i~lvD~pGl~~~a~~~~glg-~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 54 VKPKKIVPATIEFVDIAGLVKGASKGEGLG-NKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hCCceeeeeEEEEEECCCcCCCCchhhHHH-HHHHHHHHhCCEEEEEEeCc
Confidence 210 1123589999999886544433222 34466667899999999974
No 265
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.80 E-value=5.4e-08 Score=83.43 Aligned_cols=70 Identities=10% Similarity=0.111 Sum_probs=40.8
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH--HhccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ--IAFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q--i~~a~iivlNK~D~ 198 (293)
..+.|+||+|......+... ....+|++++|+|..+.......... +.....+ -..+.++|.||+|+
T Consensus 49 v~L~iwDt~G~e~~~~l~~~--------~~~~~d~illvfdis~~~Sf~~i~~~---w~~~~~~~~~~~piiLVgnK~DL 117 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPL--------AYPDSDAVLICFDISRPETLDSVLKK---WQGETQEFCPNAKVVLVGCKLDM 117 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHH--------hccCCCEEEEEEECCCHHHHHHHHHH---HHHHHHhhCCCCCEEEEEECccc
Confidence 45779999997543322211 22578899999999876443221000 1111111 13468899999998
Q ss_pred CCC
Q 022736 199 VSP 201 (293)
Q Consensus 199 ~~~ 201 (293)
.+.
T Consensus 118 ~~~ 120 (222)
T cd04173 118 RTD 120 (222)
T ss_pred ccc
Confidence 653
No 266
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.80 E-value=8.1e-08 Score=87.83 Aligned_cols=151 Identities=22% Similarity=0.281 Sum_probs=85.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchh-hhhcCCCCcchhhhhhccCcceeeccchh
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERA-MINEGEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~-~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
.++-+|.++|.-||||||..-+|... ..++|+.++..|.--...++.- .+.. ..++. +.....+ ...-+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~-q~~v~---~f~~~~~----~~Pv~ 169 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAE-QVGVP---FFGSGTE----KDPVE 169 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHH-HcCCc---eecCCCC----CCHHH
Confidence 34556778999999999999998763 4799999999986421111110 0000 00000 0000000 00001
Q ss_pred H-HHHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 107 L-VQALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 107 l-~~~l~~l~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
+ ..++... ....+|++||||+| +.....+.+.+. .+....+.+-+++|+|+..+.+-... ...+.+
T Consensus 170 Iak~al~~a--k~~~~DvvIvDTAGRl~ide~Lm~El~---~Ik~~~~P~E~llVvDam~GQdA~~~-------A~aF~e 237 (451)
T COG0541 170 IAKAALEKA--KEEGYDVVIVDTAGRLHIDEELMDELK---EIKEVINPDETLLVVDAMIGQDAVNT-------AKAFNE 237 (451)
T ss_pred HHHHHHHHH--HHcCCCEEEEeCCCcccccHHHHHHHH---HHHhhcCCCeEEEEEecccchHHHHH-------HHHHhh
Confidence 1 2233322 24568999999999 444455554332 24455678889999999877654332 223322
Q ss_pred HhccCEEEEeCCCCCC
Q 022736 185 IAFADVVILNKVDLVS 200 (293)
Q Consensus 185 i~~a~iivlNK~D~~~ 200 (293)
.---.=+|++|.|...
T Consensus 238 ~l~itGvIlTKlDGda 253 (451)
T COG0541 238 ALGITGVILTKLDGDA 253 (451)
T ss_pred hcCCceEEEEcccCCC
Confidence 2223578899999654
No 267
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.6e-08 Score=88.02 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=78.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
...++.+||+||-+. +.+++ +....-+|..++|+|+..+.+.... ++.-.-..+-...++|+||+|.
T Consensus 68 e~lq~tlvDCPGHas---LIRti-----iggaqiiDlm~lviDv~kG~QtQtA-----EcLiig~~~c~klvvvinkid~ 134 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHAS---LIRTI-----IGGAQIIDLMILVIDVQKGKQTQTA-----ECLIIGELLCKKLVVVINKIDV 134 (522)
T ss_pred ccceeEEEeCCCcHH---HHHHH-----HhhhheeeeeeEEEehhcccccccc-----hhhhhhhhhccceEEEEecccc
Confidence 457899999999653 33333 3445668899999999876654321 1221222223457899999999
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCc----chhhhhhhhhhhhccCC
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA----THVTRLEGLLEEHQYKS 262 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~----~~~~~l~~~l~~~~~~~ 262 (293)
..+.++...++...+++++--.... . -.-.+++++|+.+| +++.+|...+++.-..|
T Consensus 135 lpE~qr~ski~k~~kk~~KtLe~t~-----f--~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 135 LPENQRASKIEKSAKKVRKTLESTG-----F--DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhcC-----c--CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 8876655566666666654322110 0 12257889999999 77888888887654434
No 268
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.79 E-value=1.4e-08 Score=77.93 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=36.6
Q ss_pred EEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-----ccCEEEEeCCC
Q 022736 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-----FADVVILNKVD 197 (293)
Q Consensus 123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-----~a~iivlNK~D 197 (293)
+.+.|++|.......... .....|++++|+|.++....... .. +..++..+. .|.++|.||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~--------~~~~~d~~ilv~D~s~~~s~~~~-~~---~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQF--------FLKKADAVILVYDLSDPESLEYL-SQ---LLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHH--------HHHHSCEEEEEEECCGHHHHHHH-HH---HHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEecCccceecccccc--------hhhcCcEEEEEEcCCChHHHHHH-HH---HHHHHHHHHccCCCCCEEEEEeccC
Confidence 678999997432211111 13568899999999876532221 00 122333333 67899999998
No 269
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.78 E-value=5.8e-08 Score=93.25 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=45.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
++.++.|+||||..+.... .......+|++|+|+|+......... .+.........|.++++||+|+
T Consensus 78 ~~~~inliDTPG~~df~~~--------~~~~l~~aD~aIlVvDa~~gv~~~t~-----~l~~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSED--------TYRTLTAVDNCLMVIDAAKGVETRTR-----KLMEVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred CCeEEEEEECCChhhHHHH--------HHHHHHhCCEEEEEEECCCCCCHHHH-----HHHHHHHhcCCCEEEEEECccc
Confidence 4567899999998543221 12233568999999999864322211 0223334445789999999998
Q ss_pred CCC
Q 022736 199 VSP 201 (293)
Q Consensus 199 ~~~ 201 (293)
...
T Consensus 145 ~~~ 147 (527)
T TIGR00503 145 DIR 147 (527)
T ss_pred cCC
Confidence 754
No 270
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.77 E-value=1.8e-07 Score=87.26 Aligned_cols=150 Identities=20% Similarity=0.238 Sum_probs=80.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchh
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
+.-+++++|++|+||||++..|... ..|.+++++..|.-. ...-..+-.. ...++.+ .. .+ .......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R-~~a~~QL~~~a~~~gvp~---~~--~~--~~~~P~~ 169 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR-PAAIEQLKVLGQQVGVPV---FA--LG--KGQSPVE 169 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc-hHHHHHHHHHHHhcCCce---Ee--cC--CCCCHHH
Confidence 4558889999999999999888764 358899999998643 1111111000 0011100 00 00 0001112
Q ss_pred HH-HHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 107 LV-QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 107 l~-~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
+. +.+... ...++|+|||||+|... .......+. .+......+.+++|+|+......... ...+..
T Consensus 170 i~~~al~~~--~~~~~DvVIIDTaGr~~~d~~l~~eL~---~i~~~~~p~e~lLVvda~tgq~~~~~-------a~~f~~ 237 (428)
T TIGR00959 170 IARRALEYA--KENGFDVVIVDTAGRLQIDEELMEELA---AIKEILNPDEILLVVDAMTGQDAVNT-------AKTFNE 237 (428)
T ss_pred HHHHHHHHH--HhcCCCEEEEeCCCccccCHHHHHHHH---HHHHhhCCceEEEEEeccchHHHHHH-------HHHHHh
Confidence 22 222222 13568999999999543 233332221 12233456788999999764332221 122221
Q ss_pred HhccCEEEEeCCCCCC
Q 022736 185 IAFADVVILNKVDLVS 200 (293)
Q Consensus 185 i~~a~iivlNK~D~~~ 200 (293)
.-..+-+|+||.|...
T Consensus 238 ~v~i~giIlTKlD~~~ 253 (428)
T TIGR00959 238 RLGLTGVVLTKLDGDA 253 (428)
T ss_pred hCCCCEEEEeCccCcc
Confidence 1235789999999643
No 271
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.6e-08 Score=94.24 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=83.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
+-+-+|||||..+...- .-....-++++++||||..+.+..... -+. ..-+.+.+.+.|+||+|+..
T Consensus 125 ylLNLIDTPGHvDFs~E--------VsRslaac~G~lLvVDA~qGvqAQT~a----nf~-lAfe~~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 125 YLLNLIDTPGHVDFSGE--------VSRSLAACDGALLVVDASQGVQAQTVA----NFY-LAFEAGLAIIPVLNKIDLPS 191 (650)
T ss_pred eEEEeecCCCcccccce--------ehehhhhcCceEEEEEcCcCchHHHHH----HHH-HHHHcCCeEEEeeeccCCCC
Confidence 55679999998775311 122335689999999999876543321 011 22334567899999999987
Q ss_pred CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEE
Q 022736 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSI 276 (293)
Q Consensus 201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 276 (293)
++ .++++..+.++.. ++.++++.+||++|.|++++.+.+-+.-..| ....+.+++.+.+
T Consensus 192 ad-----pe~V~~q~~~lF~-----------~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP-~~~~d~plr~Lif 250 (650)
T KOG0462|consen 192 AD-----PERVENQLFELFD-----------IPPAEVIYVSAKTGLNVEELLEAIIRRVPPP-KGIRDAPLRMLIF 250 (650)
T ss_pred CC-----HHHHHHHHHHHhc-----------CCccceEEEEeccCccHHHHHHHHHhhCCCC-CCCCCcchHHHhh
Confidence 64 6888888887764 3456889999999999999887775432222 2233444544433
No 272
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.77 E-value=4.6e-07 Score=79.67 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=85.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
+.+.++++|++|+||||++..+... ..+.+++++..|... .+.-..+..... . +.--...+....++.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-i~~~~ql~~~~~-------~--~~~~~~~~~~~~~l~ 143 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYVK-------T--IGFEVIAVRDEAAMT 143 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHhh-------h--cCceEEecCCHHHHH
Confidence 5689999999999999999998764 346789998887542 111111111100 0 000001112334556
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 109 QALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
..+..+.. ..++|++||||+|-.. .....+.+. ..+ .....+.+++|+|++........ ....+.. -.
T Consensus 144 ~~l~~l~~-~~~~D~ViIDt~Gr~~~~~~~l~el~--~~~-~~~~~~~~~LVl~a~~~~~d~~~------~~~~f~~-~~ 212 (270)
T PRK06731 144 RALTYFKE-EARVDYILIDTAGKNYRASETVEEMI--ETM-GQVEPDYICLTLSASMKSKDMIE------IITNFKD-IH 212 (270)
T ss_pred HHHHHHHh-cCCCCEEEEECCCCCcCCHHHHHHHH--HHH-hhhCCCeEEEEEcCccCHHHHHH------HHHHhCC-CC
Confidence 66655532 3578999999999553 233332221 111 22344568999998754433322 1222222 34
Q ss_pred cCEEEEeCCCCCCC
Q 022736 188 ADVVILNKVDLVSP 201 (293)
Q Consensus 188 a~iivlNK~D~~~~ 201 (293)
.+-+++||.|-...
T Consensus 213 ~~~~I~TKlDet~~ 226 (270)
T PRK06731 213 IDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEEeecCCCC
Confidence 68999999997653
No 273
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.75 E-value=1.6e-08 Score=92.08 Aligned_cols=103 Identities=21% Similarity=0.158 Sum_probs=62.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
..++|+|.||+|||||+|+|. +.+ +.+.+.+++|+......+.- . +.-.+.|.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt----~~~-~~v~nypftTi~p~~G~~~v-------------~---------d~r~~~l~ 55 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALT----KAG-AEAANYPFCTIEPNVGVVPV-------------P---------DPRLDKLA 55 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHh----CCC-CeecccccccccceEEEEEe-------------c---------cccchhhH
Confidence 358899999999999999999 555 56777777643322111110 0 00011122
Q ss_pred HHHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736 113 QLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (293)
Q Consensus 113 ~l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~ 163 (293)
.+... .-..++.++|+||+.......+.+ ....+....++|.+++|||+.
T Consensus 56 ~~~~p~~~~~a~i~lvD~pGL~~~a~~g~gl-g~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 56 EIVKPKKIVPATIEFVDIAGLVKGASKGEGL-GNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HhcCCccccCceEEEEECCCCCCCCChHHHH-HHHHHHHHHhCCEEEEEEeCC
Confidence 22110 012358999999987654433322 244566778999999999984
No 274
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.74 E-value=8.5e-08 Score=82.77 Aligned_cols=125 Identities=19% Similarity=0.272 Sum_probs=70.8
Q ss_pred ceeEEE-EEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 31 SVGVTV-ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 31 ~~pvi~-i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.-|+.+ ++|..|+||||+||+|.... ...++ +.|....+......
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~-~~~v~----~vg~~t~~~~~~~~----------------------------- 82 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGE-VKEVS----KVGVGTDITTRLRL----------------------------- 82 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhcc-Cceee----ecccCCCchhhHHh-----------------------------
Confidence 467765 99999999999999999421 11121 11210111111111
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH-HHHHHhcc
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE-AIHQIAFA 188 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~-~~~qi~~a 188 (293)
..+.-..+|+||||+.+...-.... .+.+..-..++|.|++++|+....-..+... +.. ........
T Consensus 83 -------~~~~~~l~lwDtPG~gdg~~~D~~~-r~~~~d~l~~~DLvL~l~~~~draL~~d~~f----~~dVi~~~~~~~ 150 (296)
T COG3596 83 -------SYDGENLVLWDTPGLGDGKDKDAEH-RQLYRDYLPKLDLVLWLIKADDRALGTDEDF----LRDVIILGLDKR 150 (296)
T ss_pred -------hccccceEEecCCCcccchhhhHHH-HHHHHHHhhhccEEEEeccCCCccccCCHHH----HHHHHHhccCce
Confidence 1223457899999998854333211 1223444567889999999976433322210 111 12333467
Q ss_pred CEEEEeCCCCCCC
Q 022736 189 DVVILNKVDLVSP 201 (293)
Q Consensus 189 ~iivlNK~D~~~~ 201 (293)
.++++|-+|...+
T Consensus 151 ~i~~VtQ~D~a~p 163 (296)
T COG3596 151 VLFVVTQADRAEP 163 (296)
T ss_pred eEEEEehhhhhcc
Confidence 7999999997654
No 275
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.72 E-value=8.2e-07 Score=81.94 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=88.7
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc------CCCCeEEEEEcCCCCccccchhhhhcCC-CCcchhhhhhccCcceeec
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG------KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCT 102 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~------~~~~~vavv~~d~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~gcicc~ 102 (293)
.+..+++++|+.|+||||.+.+|... ..+.+++++..|... .+....+-..+. -++. ..+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R-~aa~eQL~~~a~~lgvp----------v~~~~ 240 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR-IGAKKQIQTYGDIMGIP----------VKAIE 240 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc-HHHHHHHHHHhhcCCcc----------eEeeC
Confidence 34568999999999999999999753 247899999988743 222111111110 1110 11222
Q ss_pred cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHH-HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHH
Q 022736 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEA 181 (293)
Q Consensus 103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~ 181 (293)
...++...+.. ..++|+|||||+|....... ...+ ...+.....-.-+++|+|++.....+. ..
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el--~~~l~~~~~~~e~~LVlsat~~~~~~~---------~~ 305 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEM--KELLNACGRDAEFHLAVSSTTKTSDVK---------EI 305 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHH--HHHHHhcCCCCeEEEEEcCCCCHHHHH---------HH
Confidence 23344444433 35789999999996542211 1111 111221111124789999987654433 23
Q ss_pred HHHHh--ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 182 IHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 182 ~~qi~--~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
+.+.. ..+-+|+||.|-...- ..+.+.+...+
T Consensus 306 ~~~~~~~~~~~~I~TKlDet~~~------G~~l~~~~~~~ 339 (388)
T PRK12723 306 FHQFSPFSYKTVIFTKLDETTCV------GNLISLIYEMR 339 (388)
T ss_pred HHHhcCCCCCEEEEEeccCCCcc------hHHHHHHHHHC
Confidence 33332 2689999999976432 44555554443
No 276
>PRK12740 elongation factor G; Reviewed
Probab=98.72 E-value=9.9e-08 Score=94.73 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=45.2
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
.+.++.+|||||..+..... ......+|.+++|+|+.......... ..........+.++++||+|+
T Consensus 58 ~~~~i~liDtPG~~~~~~~~--------~~~l~~aD~vllvvd~~~~~~~~~~~-----~~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEV--------ERALRVLDGAVVVVCAVGGVEPQTET-----VWRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred CCEEEEEEECCCcHHHHHHH--------HHHHHHhCeEEEEEeCCCCcCHHHHH-----HHHHHHHcCCCEEEEEECCCC
Confidence 45789999999986532211 22335689999999998654322110 122233446789999999998
Q ss_pred CCC
Q 022736 199 VSP 201 (293)
Q Consensus 199 ~~~ 201 (293)
...
T Consensus 125 ~~~ 127 (668)
T PRK12740 125 AGA 127 (668)
T ss_pred CCC
Confidence 764
No 277
>PTZ00258 GTP-binding protein; Provisional
Probab=98.71 E-value=2.4e-08 Score=91.77 Aligned_cols=103 Identities=22% Similarity=0.091 Sum_probs=62.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.-++|+|.||+|||||+|+|. +.+ +.+.+.+++|.......+. ..+.-.+.|.
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt----~~~-~~v~n~pftTi~p~~g~v~----------------------~~d~r~~~l~ 74 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALC----KQQ-VPAENFPFCTIDPNTARVN----------------------VPDERFDWLC 74 (390)
T ss_pred cEEEEECCCCCChHHHHHHHh----cCc-ccccCCCCCcccceEEEEe----------------------cccchhhHHH
Confidence 358889999999999999998 444 3667777764322211111 0111112222
Q ss_pred HHHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736 113 QLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (293)
Q Consensus 113 ~l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~ 163 (293)
.+... .-+.++.++||||+.........+ ....+....++|.+++|||+.
T Consensus 75 ~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gL-g~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 75 KHFKPKSIVPAQLDITDIAGLVKGASEGEGL-GNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHcCCcccCCCCeEEEECCCcCcCCcchhHH-HHHHHHHHHHCCEEEEEEeCC
Confidence 22211 123468999999987654433222 234466678899999999983
No 278
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.70 E-value=4.3e-07 Score=89.63 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=87.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~---~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
-.+++++|+.|+||||++.+|... ..| ++++++..|..- ++.-..+-..+ +...++ ...+....++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R-igA~eQL~~~a-------~~~gvp--v~~~~~~~~l 254 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR-IGALEQLRIYG-------RILGVP--VHAVKDAADL 254 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc-hHHHHHHHHHH-------HhCCCC--ccccCCHHHH
Confidence 359999999999999999999863 234 589998887542 22211111100 000000 0111223445
Q ss_pred HHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 108 ~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
..++..+ .+.|+|||||+|... ...+.+.+. .+......+-+++|+|+......+.. ....+....
T Consensus 255 ~~al~~~----~~~D~VLIDTAGRs~~d~~l~eel~---~l~~~~~p~e~~LVLsAt~~~~~l~~------i~~~f~~~~ 321 (767)
T PRK14723 255 RFALAAL----GDKHLVLIDTVGMSQRDRNVSEQIA---MLCGVGRPVRRLLLLNAASHGDTLNE------VVHAYRHGA 321 (767)
T ss_pred HHHHHHh----cCCCEEEEeCCCCCccCHHHHHHHH---HHhccCCCCeEEEEECCCCcHHHHHH------HHHHHhhcc
Confidence 5555543 467999999999554 233333221 11122334467999999864443322 122233221
Q ss_pred --ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 187 --FADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 187 --~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
..+-+|+||.|-...- -.+.+.+...+
T Consensus 322 ~~~i~glIlTKLDEt~~~------G~iL~i~~~~~ 350 (767)
T PRK14723 322 GEDVDGCIITKLDEATHL------GPALDTVIRHR 350 (767)
T ss_pred cCCCCEEEEeccCCCCCc------cHHHHHHHHHC
Confidence 3678999999976533 44555555444
No 279
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.70 E-value=1.1e-07 Score=91.41 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=45.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
++..+.++||||..+..... ......+|++++|+|+......... .......+...|.++++||+|+
T Consensus 77 ~~~~inliDTPG~~df~~~~--------~~~l~~aD~aIlVvDa~~gv~~~t~-----~l~~~~~~~~iPiiv~iNK~D~ 143 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDT--------YRTLTAVDSALMVIDAAKGVEPQTR-----KLMEVCRLRDTPIFTFINKLDR 143 (526)
T ss_pred CCEEEEEEECCCchhhHHHH--------HHHHHHCCEEEEEEecCCCCCHHHH-----HHHHHHHhcCCCEEEEEECCcc
Confidence 35668999999976543222 1223468999999999764322211 1223344456789999999998
Q ss_pred CCCC
Q 022736 199 VSPE 202 (293)
Q Consensus 199 ~~~~ 202 (293)
....
T Consensus 144 ~~a~ 147 (526)
T PRK00741 144 DGRE 147 (526)
T ss_pred cccC
Confidence 7654
No 280
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=1.2e-07 Score=77.47 Aligned_cols=157 Identities=20% Similarity=0.195 Sum_probs=91.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
-=++++|-.++||||||++++... ..+..++++|+|...- .+.+.
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~-------fd~~YqATIGiDFlsk-----------t~~l~----------------- 67 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDK-------FDNTYQATIGIDFLSK-----------TMYLE----------------- 67 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhh-------hcccccceeeeEEEEE-----------EEEEc-----------------
Confidence 346679999999999999999642 2233444455553210 00110
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc----
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---- 188 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a---- 188 (293)
...+.+-++||+|.-....+..... ....++|.|.|-++....... .++.+-+..-..+
T Consensus 68 -----d~~vrLQlWDTAGQERFrslipsY~--------Rds~vaviVyDit~~~Sfe~t----~kWi~dv~~e~gs~~vi 130 (221)
T KOG0094|consen 68 -----DRTVRLQLWDTAGQERFRSLIPSYI--------RDSSVAVIVYDITDRNSFENT----SKWIEDVRRERGSDDVI 130 (221)
T ss_pred -----CcEEEEEEEecccHHHHhhhhhhhc--------cCCeEEEEEEeccccchHHHH----HHHHHHHHhccCCCceE
Confidence 1234567999999877666554433 345567777887654332211 0012212221223
Q ss_pred CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 189 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 189 ~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.++|-||.||++..+ ...++-...-+++| ...+.+||++|.|+.++-..+.+.
T Consensus 131 I~LVGnKtDL~dkrq--vs~eEg~~kAkel~---------------a~f~etsak~g~NVk~lFrrIaa~ 183 (221)
T KOG0094|consen 131 IFLVGNKTDLSDKRQ--VSIEEGERKAKELN---------------AEFIETSAKAGENVKQLFRRIAAA 183 (221)
T ss_pred EEEEcccccccchhh--hhHHHHHHHHHHhC---------------cEEEEecccCCCCHHHHHHHHHHh
Confidence 245559999998754 34445455555554 245678999999998877666543
No 281
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.69 E-value=6.4e-07 Score=82.80 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=85.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCCccccchhhhhc-CCCCcchhhhhhccCcceeeccchhH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~~~~~d~~~~~~-~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
..+++++|++||||||++.+|... ..|.+++++..|..- .+....+-.. ...++.. . . ..++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R-~aA~eQLk~yAe~lgvp~----------~--~-~~~~ 288 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR-IAAIEQLKRYADTMGMPF----------Y--P-VKDI 288 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh-hhHHHHHHHHHHhcCCCe----------e--e-hHHH
Confidence 457889999999999999999853 457899999988743 1111111110 0001000 0 0 0112
Q ss_pred HHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccc--cccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 108 VQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 108 ~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~--~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
..... .+. ..++|+|||||+|... .....+.+ ...+... ..-.-+++|+|+......+.. ....+ +
T Consensus 289 ~~l~~-~l~-~~~~D~VLIDTaGr~~rd~~~l~eL--~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~------~~~~f-~ 357 (432)
T PRK12724 289 KKFKE-TLA-RDGSELILIDTAGYSHRNLEQLERM--QSFYSCFGEKDSVENLLVLSSTSSYHHTLT------VLKAY-E 357 (432)
T ss_pred HHHHH-HHH-hCCCCEEEEeCCCCCccCHHHHHHH--HHHHHhhcCCCCCeEEEEEeCCCCHHHHHH------HHHHh-c
Confidence 22222 222 3678999999999753 23333222 1111111 112247889999876654432 12222 2
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
.-..+-+|+||.|-...- ..+.+.....+
T Consensus 358 ~~~~~glIlTKLDEt~~~------G~il~i~~~~~ 386 (432)
T PRK12724 358 SLNYRRILLTKLDEADFL------GSFLELADTYS 386 (432)
T ss_pred CCCCCEEEEEcccCCCCc------cHHHHHHHHHC
Confidence 224689999999976432 44555554443
No 282
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.66 E-value=3.2e-07 Score=77.09 Aligned_cols=107 Identities=10% Similarity=-0.012 Sum_probs=60.0
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D~ 198 (293)
..+.|+||+|..+. +.. .....++++++|.|..+....... .. .+...+.+. ..+.++|.||+|+
T Consensus 66 v~l~iwDTaG~~~~--~~~--------~~~~~ad~iilv~d~t~~~Sf~~~-~~--~w~~~i~~~~~~~piilvgNK~DL 132 (195)
T cd01873 66 VSLRLWDTFGDHDK--DRR--------FAYGRSDVVLLCFSIASPNSLRNV-KT--MWYPEIRHFCPRVPVILVGCKLDL 132 (195)
T ss_pred EEEEEEeCCCChhh--hhc--------ccCCCCCEEEEEEECCChhHHHHH-HH--HHHHHHHHhCCCCCEEEEEEchhc
Confidence 45789999997531 110 122468889999998765432111 00 011122221 3467999999998
Q ss_pred CCCC-----------------CCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 199 VSPE-----------------RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 199 ~~~~-----------------~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
.... .+....++.++..+.++ ...+.+||++|+|++++-..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~---------------~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 133 RYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG---------------IPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred cccccchhhhcccccccccccCCccCHHHHHHHHHHhC---------------CEEEEcCCCCCCCHHHHHHHH
Confidence 6421 01112233333333222 146789999999998876554
No 283
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.65 E-value=4.8e-07 Score=84.75 Aligned_cols=158 Identities=22% Similarity=0.251 Sum_probs=84.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.+++|+|+.|+||||++..|... ..+.+++++..|+.. .+....+...+ ....+ ....+....++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r-~~a~eqL~~~a-------~~~~v--p~~~~~~~~~l~ 291 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR-IGAVEQLKTYA-------KIMGI--PVEVVYDPKELA 291 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH-HHHHHHHHHHH-------HHhCC--ceEccCCHHhHH
Confidence 58999999999999999998653 346899999988742 11111111100 00000 001112233455
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPA-PLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~-~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
..+..+ .++|+|||||+|..... .....+ ...+.....-..+.+|+++......+.. +...+..+.
T Consensus 292 ~~l~~~----~~~DlVlIDt~G~~~~d~~~~~~L--~~ll~~~~~~~~~~LVl~a~~~~~~l~~------~~~~f~~~~- 358 (424)
T PRK05703 292 KALEQL----RDCDVILIDTAGRSQRDKRLIEEL--KALIEFSGEPIDVYLVLSATTKYEDLKD------IYKHFSRLP- 358 (424)
T ss_pred HHHHHh----CCCCEEEEeCCCCCCCCHHHHHHH--HHHHhccCCCCeEEEEEECCCCHHHHHH------HHHHhCCCC-
Confidence 555433 46899999999965432 111111 1112211122356788888755444332 122222222
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
.+-+|+||.|-... ...+.+.+...+
T Consensus 359 ~~~vI~TKlDet~~------~G~i~~~~~~~~ 384 (424)
T PRK05703 359 LDGLIFTKLDETSS------LGSILSLLIESG 384 (424)
T ss_pred CCEEEEeccccccc------ccHHHHHHHHHC
Confidence 46899999997543 245555555543
No 284
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.65 E-value=9e-08 Score=90.29 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=59.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH--HhhhcccCCchHHHHHHhcc-CEEEEeC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ--IDKYRHLSSYPEAIHQIAFA-DVVILNK 195 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~--~~~~~~~~~~~~~~~qi~~a-~iivlNK 195 (293)
.+..+.||||||..+.... .......+|..|+|||+...... ........++......++.+ .++++||
T Consensus 83 ~~~~i~liDtPGh~df~~~--------~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNK 154 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKN--------MITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNK 154 (447)
T ss_pred CCEEEEEEECCCHHHHHHH--------HHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEc
Confidence 3456889999996443221 23344678999999999863110 00000000122233445665 4778999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT 249 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~ 249 (293)
+|+.+.......+.++.+.++.+....-. . ..-..++++|+++|+|+.
T Consensus 155 mD~~~~~~~~~~~~~i~~ei~~~l~~~g~-----~-~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 155 MDATTPKYSKARYDEIVKEVSSYLKKVGY-----N-PDKIPFVPISGFEGDNMI 202 (447)
T ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHcCC-----C-cccceEEEEecccccccc
Confidence 99873211001223333333322111000 0 001357899999999874
No 285
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.64 E-value=2.5e-08 Score=80.61 Aligned_cols=91 Identities=25% Similarity=0.332 Sum_probs=59.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccc-----hhhhhcCCCCcchhhhhhccCcceeeccchh
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE-----RAMINEGEGGALVEEWVELANGCICCTVKHS 106 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d-----~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~ 106 (293)
|+.|+|+.|||||||+++|++. ..|.+++++.++.+. ..++ ........ ...+.+.++|.||.....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~-~~~d~~~~D~~~~~~ag-----a~~v~~~~~~~~~~~~~~ 74 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHD-FDIDKNGKDSYRHREAG-----ADQVIVASSRRYAFMHET 74 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc-ccCCCccccHHHHHhCC-----CCEEEEecCCeEEEEEec
Confidence 5789999999999999999985 558899999988654 3333 22232211 234567788888864321
Q ss_pred -HHHHHHHHHhhcCCCCEEEEecCC
Q 022736 107 -LVQALEQLVQRKERLDHILLETTG 130 (293)
Q Consensus 107 -l~~~l~~l~~~~~~~d~iiidt~G 130 (293)
....+..++......|++|||.-+
T Consensus 75 ~~~~~l~~ll~~~~~~D~vlVEG~k 99 (155)
T TIGR00176 75 QEERDLEALLDRLPDLDIILVEGFK 99 (155)
T ss_pred CCCcCHHHHHhhCCCCCEEEECCCC
Confidence 122333444333458999999865
No 286
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=2.8e-07 Score=82.86 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=84.8
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec--cc
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VK 104 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~~ 104 (293)
..+..||.++|..|+||||.+-+|... ..|.|++.+-.|.=-.-..|.-.......++. +.-+ --
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP-----------~ygsyte~ 166 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVP-----------FYGSYTEA 166 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCe-----------eEeccccc
Confidence 446778999999999999999999874 56899998887631101122211111000000 0000 00
Q ss_pred hh---HHHHHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736 105 HS---LVQALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (293)
Q Consensus 105 ~~---l~~~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (293)
+- ..+.+.+. +..++|+||+||+|-+. ...+.+... ........|.||+|+|++........ ..
T Consensus 167 dpv~ia~egv~~f--Kke~fdvIIvDTSGRh~qe~sLfeEM~---~v~~ai~Pd~vi~VmDasiGQaae~Q-------a~ 234 (483)
T KOG0780|consen 167 DPVKIASEGVDRF--KKENFDVIIVDTSGRHKQEASLFEEMK---QVSKAIKPDEIIFVMDASIGQAAEAQ-------AR 234 (483)
T ss_pred chHHHHHHHHHHH--HhcCCcEEEEeCCCchhhhHHHHHHHH---HHHhhcCCCeEEEEEeccccHhHHHH-------HH
Confidence 00 11122222 24689999999999443 333443221 13455678999999999876543322 22
Q ss_pred HHHHHhccCEEEEeCCCCC
Q 022736 181 AIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 181 ~~~qi~~a~iivlNK~D~~ 199 (293)
.+.+.---.-++++|.|--
T Consensus 235 aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 235 AFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HHHHhhccceEEEEecccC
Confidence 3344333457899999954
No 287
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.64 E-value=9.8e-07 Score=83.62 Aligned_cols=156 Identities=19% Similarity=0.270 Sum_probs=84.1
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeec--cc
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VK 104 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~--~~ 104 (293)
+-.+++|+|+.|+||||++.+|... ..+.+++++..|... .+-...+...+. .-|+.+.. ..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR-igA~EQLk~ya~-----------iLgv~v~~a~d~ 416 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR-VGGREQLHSYGR-----------QLGIAVHEADSA 416 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc-ccHHHHHHHhhc-----------ccCceeEecCcH
Confidence 3578999999999999999999753 225789998877642 211111111000 01111111 12
Q ss_pred hhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH-HhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736 105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (293)
Q Consensus 105 ~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~-~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (293)
.++...+. ...++|+|||||+|........ +.+ . .+..... ...++|+++......+.. ....+.
T Consensus 417 ~~L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL--~-~L~aa~~-~a~lLVLpAtss~~Dl~e------ii~~f~ 482 (559)
T PRK12727 417 ESLLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQL--N-WLRAARQ-VTSLLVLPANAHFSDLDE------VVRRFA 482 (559)
T ss_pred HHHHHHHH----HhccCCEEEecCCCcchhhHHHHHHH--H-HHHHhhc-CCcEEEEECCCChhHHHH------HHHHHH
Confidence 23444343 3356899999999976433221 111 0 1111122 246778888754333332 122233
Q ss_pred HHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 184 QIAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 184 qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
.. ...-+|+||.|.... +..+.+.+...+
T Consensus 483 ~~-~~~gvILTKlDEt~~------lG~aLsv~~~~~ 511 (559)
T PRK12727 483 HA-KPQGVVLTKLDETGR------FGSALSVVVDHQ 511 (559)
T ss_pred hh-CCeEEEEecCcCccc------hhHHHHHHHHhC
Confidence 32 568899999997532 355555555443
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.64 E-value=4e-08 Score=99.48 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=84.3
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccch--h
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH--S 106 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~--~ 106 (293)
..++.-|+|+|..++|||||+++|+.... ++-....|.+...|....+. +.-+.+..+++.|.... .
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g----~i~~~~~g~~~~~D~~~~E~-------~rgiti~~~~~~~~~~~~~~ 84 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAG----IIAQEVAGDVRMTDTRADEA-------ERGITIKSTGISLYYEMTDE 84 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcC----CcccccCCceeeccCcHHHH-------HhCCceecceeEEEeecccc
Confidence 34678899999999999999999996421 01111222211122221111 11112222222221110 0
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
......+.. ...++.+-||||||..+...- .......+|+.|+|||+.......... +........
T Consensus 85 ~~~~~~~~~-~~~~~~inliDtPGh~dF~~e--------~~~al~~~D~ailVvda~~Gv~~~t~~-----~~~~~~~~~ 150 (843)
T PLN00116 85 SLKDFKGER-DGNEYLINLIDSPGHVDFSSE--------VTAALRITDGALVVVDCIEGVCVQTET-----VLRQALGER 150 (843)
T ss_pred ccccccccc-CCCceEEEEECCCCHHHHHHH--------HHHHHhhcCEEEEEEECCCCCcccHHH-----HHHHHHHCC
Confidence 000000000 012345679999997653222 133446789999999998664432211 122333445
Q ss_pred ccCEEEEeCCCCCCCCC---CcchHHHHHHHHHhhc
Q 022736 187 FADVVILNKVDLVSPER---SGDSLDELEKEIHEIN 219 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~---~~~~~~~~~~~l~~ln 219 (293)
.|.++++||+|+.--+- ..+....+.+.+.++|
T Consensus 151 ~p~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in 186 (843)
T PLN00116 151 IRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENAN 186 (843)
T ss_pred CCEEEEEECCcccchhhcCCHHHHHHHHHHHHHHHH
Confidence 68899999999872110 0023456666666665
No 289
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=2.2e-08 Score=81.22 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=71.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEE
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVI 192 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iiv 192 (293)
.+..+.++|..|.....++..... ...+.+|+|||+.......... .+....+ ..+.++.
T Consensus 59 kn~~f~vWDvGGq~k~R~lW~~Y~--------~~t~~lIfVvDS~Dr~Ri~eak------~eL~~~l~~~~l~~~~llv~ 124 (181)
T KOG0070|consen 59 KNISFTVWDVGGQEKLRPLWKHYF--------QNTQGLIFVVDSSDRERIEEAK------EELHRMLAEPELRNAPLLVF 124 (181)
T ss_pred cceEEEEEecCCCcccccchhhhc--------cCCcEEEEEEeCCcHHHHHHHH------HHHHHHHcCcccCCceEEEE
Confidence 356788999999866655554332 4577899999998765433221 1122222 2345777
Q ss_pred EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 193 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 193 lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.||-|+.++- ...++.+.+....=.. ....+-.++|.+|+|+.+-.+|+.+.
T Consensus 125 aNKqD~~~al----s~~ei~~~L~l~~l~~----------~~w~iq~~~a~~G~GL~egl~wl~~~ 176 (181)
T KOG0070|consen 125 ANKQDLPGAL----SAAEITNKLGLHSLRS----------RNWHIQSTCAISGEGLYEGLDWLSNN 176 (181)
T ss_pred echhhccccC----CHHHHHhHhhhhccCC----------CCcEEeeccccccccHHHHHHHHHHH
Confidence 7999998765 3466666554221110 12456778999999999999998653
No 290
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4.5e-07 Score=75.21 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=95.8
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
..--++++|-+|+|||.++-++..... ...+.+++++|...- .+++.+.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f-------~~~~~sTiGIDFk~k-----------ti~l~g~------------- 59 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSF-------NTSFISTIGIDFKIK-----------TIELDGK------------- 59 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccC-------cCCccceEEEEEEEE-----------EEEeCCe-------------
Confidence 455688899999999999999997521 112222345543221 1222221
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc---
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF--- 187 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~--- 187 (293)
....-++||.|......+...+. ..+.++++|+|-.+-....... .+...+.+...
T Consensus 60 ---------~i~lQiWDtaGQerf~ti~~sYy--------rgA~gi~LvyDitne~Sfeni~----~W~~~I~e~a~~~v 118 (207)
T KOG0078|consen 60 ---------KIKLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDITNEKSFENIR----NWIKNIDEHASDDV 118 (207)
T ss_pred ---------EEEEEEEEcccchhHHHHHHHHH--------hhcCeeEEEEEccchHHHHHHH----HHHHHHHhhCCCCC
Confidence 12356999999888777775443 5677899999998765443321 13333444332
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE 252 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~ 252 (293)
+-++|-||+|+....+ ...++-++..+.+. -.++.+||+++.|+++.-
T Consensus 119 ~~~LvGNK~D~~~~R~--V~~e~ge~lA~e~G---------------~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 119 VKILVGNKCDLEEKRQ--VSKERGEALAREYG---------------IKFFETSAKTNFNIEEAF 166 (207)
T ss_pred cEEEeecccccccccc--ccHHHHHHHHHHhC---------------CeEEEccccCCCCHHHHH
Confidence 3578889999987433 35566666665542 245779999999987554
No 291
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.5e-07 Score=76.90 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=63.6
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCE---EEEeCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADV---VILNKVD 197 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~i---ivlNK~D 197 (293)
..+.|+||.|.-.-..+..... ..++..|.|.|.++......... .+.++-++.. +++ +|-||+|
T Consensus 54 ikfeIWDTAGQERy~slapMYy--------RgA~AAivvYDit~~~SF~~aK~---WvkeL~~~~~-~~~vialvGNK~D 121 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMYY--------RGANAAIVVYDITDEESFEKAKN---WVKELQRQAS-PNIVIALVGNKAD 121 (200)
T ss_pred EEEEEEEcCCccccccccccee--------cCCcEEEEEEecccHHHHHHHHH---HHHHHHhhCC-CCeEEEEecchhh
Confidence 4578999999765433332221 45667899999987554332110 0122233433 543 3569999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE 257 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~ 257 (293)
+.+..++ ..++....-.... ...+.+||+||.|++++-..+.+
T Consensus 122 L~~~R~V--~~~ea~~yAe~~g---------------ll~~ETSAKTg~Nv~~if~~Ia~ 164 (200)
T KOG0092|consen 122 LLERREV--EFEEAQAYAESQG---------------LLFFETSAKTGENVNEIFQAIAE 164 (200)
T ss_pred hhhcccc--cHHHHHHHHHhcC---------------CEEEEEecccccCHHHHHHHHHH
Confidence 9874432 3444443333211 23577999999999988766654
No 292
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.61 E-value=4.6e-08 Score=83.25 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=69.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCC--CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~--~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
-+++.|..|||||||++++.+... +....+.+..++......
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~------------------------------------ 50 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY------------------------------------ 50 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC------------------------------------
Confidence 467799999999999999997532 233344444443210000
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---hcc
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI---AFA 188 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi---~~a 188 (293)
....+..++||+|..+...+..... ...++++.++|............ .+...+... ..+
T Consensus 51 ------~~~~~~~~~Dt~gq~~~~~~~~~y~--------~~~~~~l~~~d~~~~~~~~~~~~---~~~~~l~~~~~~~~~ 113 (219)
T COG1100 51 ------RRNIKLQLWDTAGQEEYRSLRPEYY--------RGANGILIVYDSTLRESSDELTE---EWLEELRELAPDDVP 113 (219)
T ss_pred ------CCEEEEEeecCCCHHHHHHHHHHHh--------cCCCEEEEEEecccchhhhHHHH---HHHHHHHHhCCCCce
Confidence 0134578999999776555553322 45677888888875332222110 012222222 357
Q ss_pred CEEEEeCCCCCCCC
Q 022736 189 DVVILNKVDLVSPE 202 (293)
Q Consensus 189 ~iivlNK~D~~~~~ 202 (293)
.+++.||+|+....
T Consensus 114 iilv~nK~Dl~~~~ 127 (219)
T COG1100 114 ILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEEecccccccch
Confidence 88999999998764
No 293
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.61 E-value=1.6e-07 Score=85.81 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=72.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEE-----------EEEcCCCCccccc-hhhhhcCCCCcchhhhhhccCcceee
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIA-----------VILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICC 101 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~va-----------vv~~d~g~~~~~d-~~~~~~~~~~~~~~~~~~l~~gcicc 101 (293)
-++++|+-++|||||+|++...---..++ +.+.-.|.++..+ ..++-. +.+++..
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~--------kAvEI~~----- 85 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPN--------EAVEINI----- 85 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccC--------cceEEec-----
Confidence 47899999999999999999431111455 5555556322111 111110 1112110
Q ss_pred ccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhh------------------------hcchhhccccccccEE
Q 022736 102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL------------------------WLDDQLESAVRLDSII 157 (293)
Q Consensus 102 ~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~------------------------~~~~~~~~~~~~d~vi 157 (293)
...-...+.+|||+|+.....+.... .....+. .+.+..+
T Consensus 86 --------------~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~--dhstIgi 149 (492)
T TIGR02836 86 --------------NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ--EHSTIGV 149 (492)
T ss_pred --------------cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH--hcCcEEE
Confidence 00123678999999987655443211 1111111 1456667
Q ss_pred EEE-ccc-------chHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 158 TVV-DAK-------NLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 158 ~vv-Da~-------~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
+|. |++ ++..... .+...+.++..|.++|+||+|-.
T Consensus 150 vVtTDgsi~dI~Re~y~~aEe------~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 150 VVTTDGTITDIPREDYVEAEE------RVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred EEEcCCCccccccccchHHHH------HHHHHHHhcCCCEEEEEECcCCC
Confidence 777 884 2221111 13456788899999999999944
No 294
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.60 E-value=5.5e-08 Score=78.77 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=28.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~ 70 (293)
.++++|++|+|||||+|+|+ +.+.+.+...+|+
T Consensus 104 ~v~~~G~~nvGKStliN~l~----~~~~~~~~~~~g~ 136 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLR----SKKVCKVAPIPGE 136 (157)
T ss_pred EEEEEeCCCCChHHHHHHHh----cCCceeeCCCCCe
Confidence 45689999999999999999 6666777777876
No 295
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=1.5e-07 Score=86.58 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=80.9
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVD 197 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D 197 (293)
.+.+-+|||||..+..- ..-++..-+.+.++||||+.+...... ....-.++ .-.+-|+||+|
T Consensus 75 ~Y~lnlIDTPGHVDFsY--------EVSRSLAACEGalLvVDAsQGveAQTl-------AN~YlAle~~LeIiPViNKID 139 (603)
T COG0481 75 TYVLNLIDTPGHVDFSY--------EVSRSLAACEGALLVVDASQGVEAQTL-------ANVYLALENNLEIIPVLNKID 139 (603)
T ss_pred EEEEEEcCCCCccceEE--------EehhhHhhCCCcEEEEECccchHHHHH-------HHHHHHHHcCcEEEEeeeccc
Confidence 35567899999776420 011233456788999999977543221 11111222 23688999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEe
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSIC 277 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 277 (293)
+..++ .++++..+..+-. ++..+.+.+||++|.|++++.+.+-+.-..| ....+.+.+.+.+.
T Consensus 140 LP~Ad-----pervk~eIe~~iG-----------id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P-~g~~~~pLkALifD 202 (603)
T COG0481 140 LPAAD-----PERVKQEIEDIIG-----------IDASDAVLVSAKTGIGIEDVLEAIVEKIPPP-KGDPDAPLKALIFD 202 (603)
T ss_pred CCCCC-----HHHHHHHHHHHhC-----------CCcchheeEecccCCCHHHHHHHHHhhCCCC-CCCCCCcceEEEEe
Confidence 98764 4677777765542 4567888999999999999888776543323 23445556666654
Q ss_pred c
Q 022736 278 E 278 (293)
Q Consensus 278 ~ 278 (293)
+
T Consensus 203 S 203 (603)
T COG0481 203 S 203 (603)
T ss_pred c
Confidence 3
No 296
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.8e-08 Score=77.23 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=70.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH--HHHhc-cCEEEEeC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQIAF-ADVVILNK 195 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~qi~~-a~iivlNK 195 (293)
.+..+-+.|..|...-.++++-.. ...+.+|+|||+.+.......... +..++ ..+.. ..+++.||
T Consensus 60 KNLk~~vwdLggqtSirPyWRcYy--------~dt~avIyVVDssd~dris~a~~e---l~~mL~E~eLq~a~llv~anK 128 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIRPYWRCYY--------ADTDAVIYVVDSSDRDRISIAGVE---LYSMLQEEELQHAKLLVFANK 128 (182)
T ss_pred ccccceeeEccCcccccHHHHHHh--------cccceEEEEEeccchhhhhhhHHH---HHHHhccHhhcCceEEEEecc
Confidence 456678999999887777775443 467889999999876543222111 11122 22333 35677799
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
.|...... ..++...|.--+-+-++ ..|+..||.+|+|++...+|++.+
T Consensus 129 qD~~~~~t----~~E~~~~L~l~~Lk~r~----------~~Iv~tSA~kg~Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 129 QDYSGALT----RSEVLKMLGLQKLKDRI----------WQIVKTSAVKGEGLDPAMDWLQRP 177 (182)
T ss_pred ccchhhhh----HHHHHHHhChHHHhhhe----------eEEEeeccccccCCcHHHHHHHHH
Confidence 99765432 23333333211111111 457889999999999999999865
No 297
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.56 E-value=3.3e-07 Score=78.05 Aligned_cols=82 Identities=10% Similarity=0.087 Sum_probs=42.0
Q ss_pred CCCCEEEEecCCCCCcHH----HHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HHHhccCEEEE
Q 022736 119 ERLDHILLETTGLANPAP----LASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIAFADVVIL 193 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~----~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~qi~~a~iivl 193 (293)
.+..+.||||||+.++.. +...+. +........++++++|+....+......... .+...+ ..+-.-.+||+
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~-~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~--~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIK-RCLSLCSPGPHAFLLVIPLGRFTEEDREVLE--LLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHH-HHHHHTTT-ESEEEEEEETTB-SHHHHHHHH--HHHHHHCGGGGGGEEEEE
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHH-HHHHhccCCCeEEEEEEecCcchHHHHHHHH--HHHHHccHHHHhHhhHHh
Confidence 456789999999877532 222211 1111223467889999998866433222100 011111 22334578888
Q ss_pred eCCCCCCCCC
Q 022736 194 NKVDLVSPER 203 (293)
Q Consensus 194 NK~D~~~~~~ 203 (293)
+..|......
T Consensus 124 T~~d~~~~~~ 133 (212)
T PF04548_consen 124 THADELEDDS 133 (212)
T ss_dssp EEGGGGTTTT
T ss_pred hhcccccccc
Confidence 9999877653
No 298
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.56 E-value=1.5e-07 Score=76.19 Aligned_cols=150 Identities=23% Similarity=0.230 Sum_probs=85.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCC-ccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~-~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
-|++.|-+|+|||+|+|++.... ..+--+.|..||-+ ++.+|..
T Consensus 11 KViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~---------------------------------- 56 (210)
T KOG0394|consen 11 KVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDR---------------------------------- 56 (210)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCe----------------------------------
Confidence 36779999999999999998642 12223444445432 1122211
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHH--HHhhhcccCCchHHHHH-----
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLF--QIDKYRHLSSYPEAIHQ----- 184 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~--~~~~~~~~~~~~~~~~q----- 184 (293)
..-..|+||+|......+.-.| ....|..+++.|..+... .+++.. .+.+.|
T Consensus 57 --------~vtlQiWDTAGQERFqsLg~aF--------YRgaDcCvlvydv~~~~Sfe~L~~Wr-----~EFl~qa~~~~ 115 (210)
T KOG0394|consen 57 --------SVTLQIWDTAGQERFQSLGVAF--------YRGADCCVLVYDVNNPKSFENLENWR-----KEFLIQASPQD 115 (210)
T ss_pred --------EEEEEEEecccHHHhhhcccce--------ecCCceEEEEeecCChhhhccHHHHH-----HHHHHhcCCCC
Confidence 1235699999977655444222 145677788777655432 222211 122222
Q ss_pred -HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736 185 -IAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE 252 (293)
Q Consensus 185 -i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~ 252 (293)
-.+|.+|+-||+|+-+.+.+.....+.....+.-. . -+.|.+||+...|+++.-
T Consensus 116 Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~g-n-------------ipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 116 PETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKG-N-------------IPYFETSAKEATNVDEAF 170 (210)
T ss_pred CCcccEEEEcccccCCCCccceeeHHHHHHHHHhcC-C-------------ceeEEecccccccHHHHH
Confidence 24678999999998764322223334444443211 1 245778999998876443
No 299
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.56 E-value=2e-06 Score=81.22 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=84.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc---CCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG---KHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~---~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
-.|++++|+.|+||||++..|... ..| .+++++..|... .+.-..+-..+ +... -....+..+.++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R-igA~EQLr~~A-------eilG--Vpv~~~~~~~Dl 325 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR-IGGHEQLRIYG-------KILG--VPVHAVKDAADL 325 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc-hhHHHHHHHHH-------HHhC--CCeeccCCchhH
Confidence 369999999999999999999863 334 589998888642 22211111100 0000 011112233344
Q ss_pred HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc
Q 022736 108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF 187 (293)
Q Consensus 108 ~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~ 187 (293)
...+.. ..+.++++|||+|............ ..+.......-.++|+|+......+.. ....+.. ..
T Consensus 326 ~~aL~~----L~d~d~VLIDTaGr~~~d~~~~e~~--~~l~~~~~p~e~~LVLdAt~~~~~l~~------i~~~f~~-~~ 392 (484)
T PRK06995 326 RLALSE----LRNKHIVLIDTIGMSQRDRMVSEQI--AMLHGAGAPVKRLLLLNATSHGDTLNE------VVQAYRG-PG 392 (484)
T ss_pred HHHHHh----ccCCCeEEeCCCCcChhhHHHHHHH--HHHhccCCCCeeEEEEeCCCcHHHHHH------HHHHhcc-CC
Confidence 433332 2457899999999665332211110 011111112236888999865544332 1112222 23
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
.+-+|+||.|-... ...+.+.+...+
T Consensus 393 ~~g~IlTKlDet~~------~G~~l~i~~~~~ 418 (484)
T PRK06995 393 LAGCILTKLDEAAS------LGGALDVVIRYK 418 (484)
T ss_pred CCEEEEeCCCCccc------chHHHHHHHHHC
Confidence 57889999996543 345555555554
No 300
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.54 E-value=2.9e-07 Score=92.16 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=72.3
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEE-cCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVIL-NEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~-~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.++.-|+++|..++|||||+.+|+.... ++. ...|.+...|....+. +.-+.+..+.+.+...
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g-----~i~~~~~g~~~~~D~~~~E~-------~rgiTi~~~~~~~~~~---- 81 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAG-----MISEELAGEQLALDFDEEEQ-------ARGITIKAANVSMVHE---- 81 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcC-----CcchhhcCcceecCccHHHH-------HhhhhhhccceEEEEE----
Confidence 3677899999999999999999985321 111 1112111122211111 0001111111111000
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc
Q 022736 109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA 188 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a 188 (293)
. ...+..+.||||||..+..... ......+|++++|||+.......... ......+...+
T Consensus 82 ------~-~~~~~~i~liDtPG~~df~~~~--------~~~l~~~D~avlVvda~~g~~~~t~~-----~~~~~~~~~~~ 141 (731)
T PRK07560 82 ------Y-EGKEYLINLIDTPGHVDFGGDV--------TRAMRAVDGAIVVVDAVEGVMPQTET-----VLRQALRERVK 141 (731)
T ss_pred ------e-cCCcEEEEEEcCCCccChHHHH--------HHHHHhcCEEEEEEECCCCCCccHHH-----HHHHHHHcCCC
Confidence 0 0124567899999988743221 23346679999999998654322110 12222333557
Q ss_pred CEEEEeCCCCCC
Q 022736 189 DVVILNKVDLVS 200 (293)
Q Consensus 189 ~iivlNK~D~~~ 200 (293)
-++++||+|+..
T Consensus 142 ~iv~iNK~D~~~ 153 (731)
T PRK07560 142 PVLFINKVDRLI 153 (731)
T ss_pred eEEEEECchhhc
Confidence 799999999874
No 301
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=2.9e-07 Score=73.37 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=90.4
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+..=+++.|.-|||||||++.|- +.+.+..++...- +. +...
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLK----dDrl~qhvPTlHP----TS-------------E~l~----------------- 60 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLK----DDRLGQHVPTLHP----TS-------------EELS----------------- 60 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHc----cccccccCCCcCC----Ch-------------HHhe-----------------
Confidence 34557889999999999999997 4445554443221 00 0011
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-hccC
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-AFAD 189 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-~~a~ 189 (293)
-++..+--+|..|-..........+ ..++.++++||+-...........+.... ...++ ..|.
T Consensus 61 -------Ig~m~ftt~DLGGH~qArr~wkdyf--------~~v~~iv~lvda~d~er~~es~~eld~ll-~~e~la~vp~ 124 (193)
T KOG0077|consen 61 -------IGGMTFTTFDLGGHLQARRVWKDYF--------PQVDAIVYLVDAYDQERFAESKKELDALL-SDESLATVPF 124 (193)
T ss_pred -------ecCceEEEEccccHHHHHHHHHHHH--------hhhceeEeeeehhhHHHhHHHHHHHHHHH-hHHHHhcCcc
Confidence 2456688899999655444443332 56788999999975543322211110011 11222 3577
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCE--EEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAH--VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~--i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+|..||+|...+.. -++++..+.-.|-... .+........+-++|.+|...+.+..+--.|+
T Consensus 125 lilgnKId~p~a~s----e~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl 188 (193)
T KOG0077|consen 125 LILGNKIDIPYAAS----EDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWL 188 (193)
T ss_pred eeecccccCCCccc----HHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeeh
Confidence 88889999877642 2455555443332111 01111112234556666665555543333343
No 302
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.53 E-value=2.7e-07 Score=88.85 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=65.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC-CCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d-~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.|+++|.+|+||||++|.|+ +.+++.+..- +++ ..... ...
T Consensus 120 rIvLVGKTGVGKSSLINSIL----Gekvf~vss~~~~T-Tr~~e--i~~------------------------------- 161 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIF----GEVKFSTDAFGMGT-TSVQE--IEG------------------------------- 161 (763)
T ss_pred EEEEECCCCCCHHHHHHHHh----ccccccccCCCCCc-eEEEE--EEE-------------------------------
Confidence 48899999999999999999 5554444321 232 11100 000
Q ss_pred HHHhhcCCCCEEEEecCCCCCcH---HHHHhhh--cchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH-HHHh
Q 022736 113 QLVQRKERLDHILLETTGLANPA---PLASVLW--LDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI-HQIA 186 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~---~~~~~~~--~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~-~qi~ 186 (293)
...+..+.||||||+.+.. .....+. ....+ ....+|.|++|...............+..+...+ ..+-
T Consensus 162 ----~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L-sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw 236 (763)
T TIGR00993 162 ----LVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI-KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW 236 (763)
T ss_pred ----EECCceEEEEECCCCCccccchHHHHHHHHHHHHHH-hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH
Confidence 0134568999999988752 1111111 01111 1234687887765432222111100000011111 3344
Q ss_pred ccCEEEEeCCCCCCC
Q 022736 187 FADVVILNKVDLVSP 201 (293)
Q Consensus 187 ~a~iivlNK~D~~~~ 201 (293)
.-.+||+|..|.+.+
T Consensus 237 k~tIVVFThgD~lpp 251 (763)
T TIGR00993 237 FNAIVTLTHAASAPP 251 (763)
T ss_pred cCEEEEEeCCccCCC
Confidence 567999999999864
No 303
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.2e-06 Score=83.71 Aligned_cols=102 Identities=23% Similarity=0.308 Sum_probs=62.6
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCCCCC
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLVS 200 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D~~~ 200 (293)
|+++||.||+.-.......+ ......+|++|+|+.+++-.+..... +.....+- +|. +|+.||+|...
T Consensus 207 DivliDsPGld~~se~tswi-----d~~cldaDVfVlV~NaEntlt~sek~-----Ff~~vs~~-KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWI-----DSFCLDADVFVLVVNAENTLTLSEKQ-----FFHKVSEE-KPNIFILNNKWDASA 275 (749)
T ss_pred cceeccCCCCCCchhhhHHH-----HHHhhcCCeEEEEecCccHhHHHHHH-----HHHHhhcc-CCcEEEEechhhhhc
Confidence 79999999976554444322 12336799999999999866554332 22222222 454 66668889876
Q ss_pred CCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccC
Q 022736 201 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 243 (293)
Q Consensus 201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~ 243 (293)
.+. +..+.+++.++.+.|...- -..+.++-+|+.
T Consensus 276 se~--ec~e~V~~Qi~eL~v~~~~-------eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 276 SEP--ECKEDVLKQIHELSVVTEK-------EAADRVFFVSAK 309 (749)
T ss_pred ccH--HHHHHHHHHHHhcCcccHh-------hhcCeeEEEecc
Confidence 654 3667777777766553210 112457778865
No 304
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.51 E-value=2.5e-07 Score=82.00 Aligned_cols=58 Identities=14% Similarity=0.292 Sum_probs=32.9
Q ss_pred cccccEEEEEcccc-hHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCCCCCCCCCcchHHHHHHHHH
Q 022736 151 VRLDSIITVVDAKN-LLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIH 216 (293)
Q Consensus 151 ~~~d~vi~vvDa~~-~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D~~~~~~~~~~~~~~~~~l~ 216 (293)
.+++++++++++.. .....+ .+.++++. ...+-|+.|+|.+..++......++++.|+
T Consensus 112 ~RVH~cLYfI~pt~~~L~~~D--------i~~mk~Ls~~vNvIPvIaKaD~lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 112 TRVHACLYFIPPTGHGLKPLD--------IEFMKRLSKRVNVIPVIAKADTLTPEELQAFKQRIREDLE 172 (281)
T ss_dssp --EEEEEEEE-TTSSSS-HHH--------HHHHHHHTTTSEEEEEESTGGGS-HHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEcCCCccchHHH--------HHHHHHhcccccEEeEEecccccCHHHHHHHHHHHHHHHH
Confidence 57899999999853 333333 23445554 346899999999987654333334444444
No 305
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.51 E-value=4e-07 Score=76.91 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=42.3
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH----------------
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ---------------- 184 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q---------------- 184 (293)
+.+-|+||+|......+...+. ..++++|+|.|.++....... . .+...+.+
T Consensus 54 ~~l~IwDtaG~e~~~~l~~~~y--------r~ad~iIlVyDvtn~~Sf~~l-~---~W~~ei~~~~~~~~~~~~~~~~~~ 121 (202)
T cd04102 54 FFVELWDVGGSESVKSTRAVFY--------NQVNGIILVHDLTNRKSSQNL-Q---RWSLEALNKDTFPTGLLVTNGDYD 121 (202)
T ss_pred EEEEEEecCCchhHHHHHHHHh--------CcCCEEEEEEECcChHHHHHH-H---HHHHHHHHhhcccccccccccccc
Confidence 4467999999866544443322 467899999998876543221 0 01111111
Q ss_pred ------HhccCEEEEeCCCCCCC
Q 022736 185 ------IAFADVVILNKVDLVSP 201 (293)
Q Consensus 185 ------i~~a~iivlNK~D~~~~ 201 (293)
-..|.++|-||+|+.+.
T Consensus 122 ~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 122 SEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred ccccCCCCceEEEEEECccchhh
Confidence 13478999999999754
No 306
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.51 E-value=2.9e-06 Score=70.09 Aligned_cols=162 Identities=18% Similarity=0.176 Sum_probs=84.2
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchh---hhhhcc-CcceeeccchhHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVE---EWVELA-NGCICCTVKHSLVQ 109 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~---~~~~l~-~gcicc~~~~~l~~ 109 (293)
+.+..|..|+||||+.-.|.... +++.++-.|++. .+++..+-.....+.... ....+. --|..|.....+..
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l--~~vlliD~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL--KNVVLADCDVDA-PNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLCGKLVT 78 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH--hCcEEEECCCCC-CchhhhcCCCccccccceecCCceEEchhhhccccchHHHHH
Confidence 56779999999999999987654 789999999764 222211100000000000 000000 01111111122333
Q ss_pred HHHHHH---hhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736 110 ALEQLV---QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 110 ~l~~l~---~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
.+.+.+ ....++|++||||||..... .. ......|.++.++.++......- ....+.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~d~viiDtpp~~~~~-~~---------~~l~~aD~vliv~~~~~~~~~~~-----~~~~~~l~~~~ 143 (179)
T cd03110 79 EVRKHAKEIAKAEGAELIIIDGPPGIGCP-VI---------ASLTGADAALLVTEPTPSGLHDL-----ERAVELVRHFG 143 (179)
T ss_pred HHHHHHHHhhhhcCCCEEEEECcCCCcHH-HH---------HHHHcCCEEEEEecCCcccHHHH-----HHHHHHHHHcC
Confidence 333332 12367999999999755431 11 11245788899998875421110 01233344445
Q ss_pred ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736 187 FADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l 218 (293)
.+..+|+||+|..... ...+++.++..
T Consensus 144 ~~~~vV~N~~~~~~~~-----~~~~~~~~~~~ 170 (179)
T cd03110 144 IPVGVVINKYDLNDEI-----AEEIEDYCEEE 170 (179)
T ss_pred CCEEEEEeCCCCCcch-----HHHHHHHHHHc
Confidence 5668999999865321 24455555543
No 307
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.50 E-value=1.3e-07 Score=77.77 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE 71 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~ 71 (293)
..++++|.||+|||||+|+|+ +.+.+.+.+.+|.|
T Consensus 118 ~~~~~vG~pnvGKSslin~l~----~~~~~~~~~~pg~T 152 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLK----RSRACNVGATPGVT 152 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHh----CcccceecCCCCeE
Confidence 457899999999999999999 66777788888863
No 308
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.49 E-value=5.2e-07 Score=90.14 Aligned_cols=70 Identities=19% Similarity=0.115 Sum_probs=44.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
.+.++.||||||..+..... ......+|++++|+|+.......... ......+...+-++++||+|.
T Consensus 84 ~~~~i~liDTPG~~~f~~~~--------~~al~~aD~~llVvda~~g~~~~t~~-----~~~~~~~~~~p~ivviNKiD~ 150 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGDV--------TRAMRAVDGAIVVVCAVEGVMPQTET-----VLRQALKENVKPVLFINKVDR 150 (720)
T ss_pred CceEEEEEeCCCccccHHHH--------HHHHHhcCEEEEEEecCCCCCccHHH-----HHHHHHHcCCCEEEEEEChhc
Confidence 45788999999987743222 23346789999999997643221110 111222334577899999998
Q ss_pred CCC
Q 022736 199 VSP 201 (293)
Q Consensus 199 ~~~ 201 (293)
...
T Consensus 151 ~~~ 153 (720)
T TIGR00490 151 LIN 153 (720)
T ss_pred ccc
Confidence 753
No 309
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.49 E-value=4.4e-06 Score=77.77 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=85.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceee--ccch
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC--TVKH 105 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc--~~~~ 105 (293)
-.+++++|+.|+||||++..|... ....+++++..|.-. ++.-..+-. .-++. |+-+. ....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r-igalEQL~~----------~a~il-Gvp~~~v~~~~ 258 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR-IGGHEQLRI----------YGKLL-GVSVRSIKDIA 258 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc-hhHHHHHHH----------HHHHc-CCceecCCCHH
Confidence 468999999999999999998753 123567777665432 211111100 00111 22222 2233
Q ss_pred hHHHHHHHHHhhcCCCCEEEEecCCCCCcHHH-HHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 106 SLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 106 ~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~-~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
++...+.. ..+.++++|||+|....... .+.+ .. +.......-+++|+|++.....+.. ....+..
T Consensus 259 dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l--~~-l~~~~~~~~~~LVl~at~~~~~~~~------~~~~f~~ 325 (420)
T PRK14721 259 DLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQI--AM-LSQCGTQVKHLLLLNATSSGDTLDE------VISAYQG 325 (420)
T ss_pred HHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHH--HH-HhccCCCceEEEEEcCCCCHHHHHH------HHHHhcC
Confidence 44444433 35689999999997764322 2211 11 1121223357889999865554432 1222222
Q ss_pred HhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 185 IAFADVVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 185 i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
-..+-+|+||.|-... ...+.+.+...+
T Consensus 326 -~~~~~~I~TKlDEt~~------~G~~l~~~~~~~ 353 (420)
T PRK14721 326 -HGIHGCIITKVDEAAS------LGIALDAVIRRK 353 (420)
T ss_pred -CCCCEEEEEeeeCCCC------ccHHHHHHHHhC
Confidence 3468899999997653 245555555443
No 310
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.49 E-value=4.9e-06 Score=76.10 Aligned_cols=161 Identities=21% Similarity=0.294 Sum_probs=94.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc----CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCccee-eccchh
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHS 106 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~----~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcic-c~~~~~ 106 (293)
..+++++||.|+||||.+.+|... ...++|++|..|.-- +|.-..+-.. -.+-+-.+| |....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR-IGA~EQLk~Y----------a~im~vp~~vv~~~~e 271 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR-IGAVEQLKTY----------ADIMGVPLEVVYSPKE 271 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch-hhHHHHHHHH----------HHHhCCceEEecCHHH
Confidence 779999999999999999999753 346799999987531 2222111111 011111222 234557
Q ss_pred HHHHHHHHHhhcCCCCEEEEecCCCC--CcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 107 LVQALEQLVQRKERLDHILLETTGLA--NPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 107 l~~~l~~l~~~~~~~d~iiidt~G~~--~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
|..++..+- +.|+|+|||.|.. ++..+.+. .........+ -+-+|++++.-...+. +.+.|
T Consensus 272 l~~ai~~l~----~~d~ILVDTaGrs~~D~~~i~el---~~~~~~~~~i-~~~Lvlsat~K~~dlk---------ei~~~ 334 (407)
T COG1419 272 LAEAIEALR----DCDVILVDTAGRSQYDKEKIEEL---KELIDVSHSI-EVYLVLSATTKYEDLK---------EIIKQ 334 (407)
T ss_pred HHHHHHHhh----cCCEEEEeCCCCCccCHHHHHHH---HHHHhccccc-eEEEEEecCcchHHHH---------HHHHH
Confidence 888877663 4599999999954 34333321 2222333344 3566677765433332 23334
Q ss_pred Hhc--cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEE
Q 022736 185 IAF--ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR 226 (293)
Q Consensus 185 i~~--a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~ 226 (293)
... -+-+++||.|-.. .+..+.+.+..-+-....+.
T Consensus 335 f~~~~i~~~I~TKlDET~------s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 335 FSLFPIDGLIFTKLDETT------SLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred hccCCcceeEEEcccccC------chhHHHHHHHHhCCCeEEEe
Confidence 332 3678999999654 34666777666554444443
No 311
>PLN00023 GTP-binding protein; Provisional
Probab=98.47 E-value=7.2e-07 Score=79.89 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=42.5
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH---------------
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--------------- 185 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--------------- 185 (293)
+.+-|+||+|......+...++ ..++++|+|+|.++....... ..+...+.+.
T Consensus 83 v~LqIWDTAGqErfrsL~~~yy--------r~AdgiILVyDITdr~SFenL----~kWl~eI~~~~~~s~p~~s~~~~~~ 150 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFY--------SQINGVIFVHDLSQRRTKTSL----QKWASEVAATGTFSAPLGSGGPGGL 150 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhc--------cCCCEEEEEEeCCCHHHHHHH----HHHHHHHHHhcccccccccccccCC
Confidence 4577999999766554443332 468889999998875433211 1122222222
Q ss_pred hccCEEEEeCCCCCCC
Q 022736 186 AFADVVILNKVDLVSP 201 (293)
Q Consensus 186 ~~a~iivlNK~D~~~~ 201 (293)
..+.+||.||+|+.+.
T Consensus 151 ~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 151 PVPYIVIGNKADIAPK 166 (334)
T ss_pred CCcEEEEEECcccccc
Confidence 1357889999999764
No 312
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.46 E-value=1.2e-06 Score=80.48 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=76.7
Q ss_pred cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCC
Q 022736 118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVD 197 (293)
Q Consensus 118 ~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D 197 (293)
+++..+-||||||.++...-.+-. ..=+|+|+++|||.....+.... .....-..+..-++|+||+|
T Consensus 65 ~~~~~INIvDTPGHADFGGEVERv--------l~MVDgvlLlVDA~EGpMPQTrF-----VlkKAl~~gL~PIVVvNKiD 131 (603)
T COG1217 65 YNGTRINIVDTPGHADFGGEVERV--------LSMVDGVLLLVDASEGPMPQTRF-----VLKKALALGLKPIVVINKID 131 (603)
T ss_pred cCCeEEEEecCCCcCCccchhhhh--------hhhcceEEEEEEcccCCCCchhh-----hHHHHHHcCCCcEEEEeCCC
Confidence 356778899999988864333211 23478999999998665443321 12222233567799999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcc----------hhhhhhhhhhhhccCCCCCCC
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT----------HVTRLEGLLEEHQYKSSQNLH 267 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~----------~~~~l~~~l~~~~~~~~~~~~ 267 (293)
..++.- .+..+++..+.-.+... ...+++. ++-.|+..|. .+..|.+.+-++-..|. ...
T Consensus 132 rp~Arp-~~Vvd~vfDLf~~L~A~-------deQLdFP-ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~-~~~ 201 (603)
T COG1217 132 RPDARP-DEVVDEVFDLFVELGAT-------DEQLDFP-IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK-GDL 201 (603)
T ss_pred CCCCCH-HHHHHHHHHHHHHhCCC-------hhhCCCc-EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC-CCC
Confidence 877542 24555666665555443 2233433 2333554442 24455555555433332 344
Q ss_pred CCCEEEEEE
Q 022736 268 DNNVRTLSI 276 (293)
Q Consensus 268 ~~~~~~~~~ 276 (293)
+.+++....
T Consensus 202 d~PlQ~qvt 210 (603)
T COG1217 202 DEPLQMQVT 210 (603)
T ss_pred CCCeEEEEE
Confidence 556665444
No 313
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.46 E-value=3.6e-07 Score=70.88 Aligned_cols=118 Identities=17% Similarity=0.206 Sum_probs=68.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
+.|..-+.|-.|...-.+++.++. ..+|.+|+|+|+..-.........+.+..+-..-.+.|..|..||-|+
T Consensus 60 g~f~LnvwDiGGqr~IRpyWsNYy--------envd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdl 131 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWSNYY--------ENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDL 131 (185)
T ss_pred CcEEEEEEecCCccccchhhhhhh--------hccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHH
Confidence 346778999999877777765443 578999999997653322211111111111222234577888899998
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 199 VSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+.. .+.+... +|- +- ++ .....+-.+|+.++++...-.+|++..
T Consensus 132 ltaa~----~eeia~k---lnl-~~-lr-----dRswhIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 132 LTAAK----VEEIALK---LNL-AG-LR-----DRSWHIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred Hhhcc----hHHHHHh---cch-hh-hh-----hceEEeeeCccccccCccCcchhhhcC
Confidence 86542 1222221 110 00 00 012345678899999988888898754
No 314
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.6e-06 Score=83.43 Aligned_cols=190 Identities=17% Similarity=0.164 Sum_probs=102.6
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL 107 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l 107 (293)
.-|.||+.|+|---+|||-|+..+-+. -+....+-+..-.|++. ... |+++...
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~-fp~------------------------~ni~e~t 526 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATY-FPA------------------------ENIREKT 526 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccc-cch------------------------HHHHHHH
Confidence 458999999999999999999999753 11112222222333210 000 0111100
Q ss_pred HHHHHHHHh-hcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh
Q 022736 108 VQALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA 186 (293)
Q Consensus 108 ~~~l~~l~~-~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~ 186 (293)
. .+..-.. +..-|.+++|||||.-....+. . ....-+|..|+|||..++..+... +....++.-.
T Consensus 527 k-~~~~~~K~~~kvPg~lvIdtpghEsFtnlR-s-------rgsslC~~aIlvvdImhGlepqti-----ESi~lLR~rk 592 (1064)
T KOG1144|consen 527 K-ELKKDAKKRLKVPGLLVIDTPGHESFTNLR-S-------RGSSLCDLAILVVDIMHGLEPQTI-----ESINLLRMRK 592 (1064)
T ss_pred H-HHHhhhhhhcCCCeeEEecCCCchhhhhhh-h-------ccccccceEEEEeehhccCCcchh-----HHHHHHHhcC
Confidence 0 0111111 1234778999999943222111 1 122346779999999887654332 1344566667
Q ss_pred ccCEEEEeCCCCCCCCCC--------------cchHHHHHHHHHh----hc---CCCEEEEeecCCCCchhhcccccCCc
Q 022736 187 FADVVILNKVDLVSPERS--------------GDSLDELEKEIHE----IN---SLAHVIRSVRCQVDLSEVLNCRAYDA 245 (293)
Q Consensus 187 ~a~iivlNK~D~~~~~~~--------------~~~~~~~~~~l~~----ln---p~a~i~~~~~~~~~~~~i~~~sa~~~ 245 (293)
.+.+|.|||+|.+=.... ......+..++.. ++ =.+.++......-.+--++|+||.+|
T Consensus 593 tpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG 672 (1064)
T KOG1144|consen 593 TPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG 672 (1064)
T ss_pred CCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC
Confidence 899999999996522110 0111112211111 11 11233322233334556889999999
Q ss_pred chhhhhhhhhhh
Q 022736 246 THVTRLEGLLEE 257 (293)
Q Consensus 246 ~~~~~l~~~l~~ 257 (293)
+|+.+|.-||.+
T Consensus 673 eGipdLl~llv~ 684 (1064)
T KOG1144|consen 673 EGIPDLLLLLVQ 684 (1064)
T ss_pred CCcHHHHHHHHH
Confidence 999999877743
No 315
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=4.9e-07 Score=82.15 Aligned_cols=121 Identities=15% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHh--hhcccCCchHHHHHHhc-cCEEEEeC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID--KYRHLSSYPEAIHQIAF-ADVVILNK 195 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~--~~~~~~~~~~~~~qi~~-a~iivlNK 195 (293)
+.+.+-|+|+||.-+. + ..+......+|..|+|||+........ ....-.+..-+.+-++. -.++++||
T Consensus 83 ~k~~~tIiDaPGHrdF--v------knmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNK 154 (428)
T COG5256 83 DKYNFTIIDAPGHRDF--V------KNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNK 154 (428)
T ss_pred CCceEEEeeCCchHHH--H------HHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEc
Confidence 3566899999993321 1 223445577899999999987531111 00111112222233332 35888999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh---hhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT---RLEGLL 255 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~---~l~~~l 255 (293)
+|.++-++ ...+++.+.+..+-...-. . .+-..++|+|++.|.|+- +...|.
T Consensus 155 MD~v~wde--~rf~ei~~~v~~l~k~~G~---~---~~~v~FIPiSg~~G~Nl~~~s~~~pWY 209 (428)
T COG5256 155 MDLVSWDE--ERFEEIVSEVSKLLKMVGY---N---PKDVPFIPISGFKGDNLTKKSENMPWY 209 (428)
T ss_pred ccccccCH--HHHHHHHHHHHHHHHHcCC---C---ccCCeEEecccccCCcccccCcCCcCc
Confidence 99997432 2445555544433211110 0 011347899999999864 344554
No 316
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=2.1e-06 Score=69.83 Aligned_cols=146 Identities=21% Similarity=0.182 Sum_probs=86.3
Q ss_pred EEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCc-cccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEE-IGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~-~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
+++.|-.|+|||.|+.++.... +...-+.+--|+|.+ +.+|
T Consensus 9 yIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id------------------------------------- 51 (216)
T KOG0098|consen 9 YIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID------------------------------------- 51 (216)
T ss_pred EEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-------------------------------------
Confidence 5679999999999999999531 111112223344430 0111
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc---C
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA---D 189 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a---~ 189 (293)
....++-|+||.|.-...++...+. ....++++|.|-++....... ..+.+-++|-..+ .
T Consensus 52 -----~k~IKlqiwDtaGqe~frsv~~syY--------r~a~GalLVydit~r~sF~hL----~~wL~D~rq~~~~NmvI 114 (216)
T KOG0098|consen 52 -----GKQIKLQIWDTAGQESFRSVTRSYY--------RGAAGALLVYDITRRESFNHL----TSWLEDARQHSNENMVI 114 (216)
T ss_pred -----CceEEEEEEecCCcHHHHHHHHHHh--------ccCcceEEEEEccchhhHHHH----HHHHHHHHHhcCCCcEE
Confidence 1334577999999877777765543 345577888988765433211 1123333444333 3
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
+++-||+|+....++ ..++-+..-++ +. -..+.+||++++++++.
T Consensus 115 mLiGNKsDL~~rR~V--s~EEGeaFA~e-hg--------------LifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 115 MLIGNKSDLEARREV--SKEEGEAFARE-HG--------------LIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEcchhhhhccccc--cHHHHHHHHHH-cC--------------ceeehhhhhhhhhHHHH
Confidence 555699999876543 45565555554 11 12346899999998754
No 317
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.41 E-value=2.9e-07 Score=85.17 Aligned_cols=139 Identities=17% Similarity=0.255 Sum_probs=72.5
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
...+..+|+|+||+|||||+|.+.+.+.. +.+.+=+ +..++ +.
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradve-----vqpYaFT----TksL~----------------------------vG 208 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDE-----VQPYAFT----TKLLL----------------------------VG 208 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccc-----cCCcccc----cchhh----------------------------hh
Confidence 34678999999999999999999864321 1111111 11111 00
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCC-cHHHHHhhhcc--hhhccccccccEEEEEcccchHHHH-hhhcccCCchHHHHH-
Q 022736 110 ALEQLVQRKERLDHILLETTGLAN-PAPLASVLWLD--DQLESAVRLDSIITVVDAKNLLFQI-DKYRHLSSYPEAIHQ- 184 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~-~~~~~~~~~~~--~~~~~~~~~d~vi~vvDa~~~~~~~-~~~~~~~~~~~~~~q- 184 (293)
.+. ..=..+.+|||||+.+ |.+-..++... .++.+... .|++++|-+.-..+. ..... ....+.-
T Consensus 209 H~d-----ykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLra--aVLYfmDLSe~CGySva~Qvk---LfhsIKpL 278 (620)
T KOG1490|consen 209 HLD-----YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRS--AVLYFMDLSEMCGYSVAAQVK---LYHSIKPL 278 (620)
T ss_pred hhh-----hheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhh--hheeeeechhhhCCCHHHHHH---HHHHhHHH
Confidence 000 0112357899999766 44333333222 23344333 489999976432211 00000 0111111
Q ss_pred -HhccCEEEEeCCCCCCCCCCcchHHHHHHHH
Q 022736 185 -IAFADVVILNKVDLVSPERSGDSLDELEKEI 215 (293)
Q Consensus 185 -i~~a~iivlNK~D~~~~~~~~~~~~~~~~~l 215 (293)
..++.++|+||+|....+.....-.++...+
T Consensus 279 FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~ 310 (620)
T KOG1490|consen 279 FANKVTILVLNKIDAMRPEDLDQKNQELLQTI 310 (620)
T ss_pred hcCCceEEEeecccccCccccCHHHHHHHHHH
Confidence 2457899999999988765433333444333
No 318
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.39 E-value=5.4e-06 Score=70.20 Aligned_cols=147 Identities=27% Similarity=0.398 Sum_probs=85.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc---CCCCeEEEEEcCCCCc----cccch---------hhhhc---C----CCC-----
Q 022736 34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGEE----IGVER---------AMINE---G----EGG----- 85 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~---~~~~~vavv~~d~g~~----~~~d~---------~~~~~---~----~~~----- 85 (293)
.|+|+|.-|+||||+...|+.. ..+.++.+|-.|+... .++.. .++.. + ..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~ 81 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKE 81 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccccc
Confidence 5889999999999998885543 3458999999887321 12211 11110 0 000
Q ss_pred -cchhh-------------------hhhccCcceeeccchhHHHHHHHHHhhcCCCCEEEEecC-CCCCcHHHHHhhhcc
Q 022736 86 -ALVEE-------------------WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETT-GLANPAPLASVLWLD 144 (293)
Q Consensus 86 -~~~~~-------------------~~~l~~gcicc~~~~~l~~~l~~l~~~~~~~d~iiidt~-G~~~~~~~~~~~~~~ 144 (293)
..+.. ..+...||.|... ..+...|+.+. ....+++++||= |+-+..
T Consensus 82 ~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~-allR~~l~~l~--~~~~e~VivDtEAGiEHfg--------- 149 (255)
T COG3640 82 NPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMN-ALLRRLLRHLI--LNRYEVVIVDTEAGIEHFG--------- 149 (255)
T ss_pred CcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHH-HHHHHHHHHHh--cccCcEEEEecccchhhhc---------
Confidence 00000 1122578988632 23333444444 356899999995 443321
Q ss_pred hhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-ccCEEEEeCCCCC
Q 022736 145 DQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FADVVILNKVDLV 199 (293)
Q Consensus 145 ~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a~iivlNK~D~~ 199 (293)
......+|.+|.|+|++.-.-.... ...+...+++ ....+|+||.|-.
T Consensus 150 --Rg~~~~vD~vivVvDpS~~sl~tae-----ri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 --RGTIEGVDLVIVVVDPSYKSLRTAE-----RIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred --cccccCCCEEEEEeCCcHHHHHHHH-----HHHHHHHHhCCceEEEEEeeccch
Confidence 1223578999999999743221111 1345567777 7889999999854
No 319
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.39 E-value=1.4e-06 Score=77.56 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=69.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVD 197 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D 197 (293)
..-+|||.||||-. ++.+ .+......+|..|.+|||.......... ..-....++.. .++.+||+|
T Consensus 84 ~KRkFIiADTPGHe---QYTR-----NMaTGASTadlAIlLVDAR~Gvl~QTrR-----Hs~I~sLLGIrhvvvAVNKmD 150 (431)
T COG2895 84 EKRKFIIADTPGHE---QYTR-----NMATGASTADLAILLVDARKGVLEQTRR-----HSFIASLLGIRHVVVAVNKMD 150 (431)
T ss_pred ccceEEEecCCcHH---HHhh-----hhhcccccccEEEEEEecchhhHHHhHH-----HHHHHHHhCCcEEEEEEeeec
Confidence 45689999999953 2222 2234446788899999998765443322 23344555543 578899999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh---hhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT---RLEGLLE 256 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~---~l~~~l~ 256 (293)
+++-.+ ...+++++....+..... +.....+|+||+.|.|+. +..+|.+
T Consensus 151 Lvdy~e--~~F~~I~~dy~~fa~~L~--------~~~~~~IPiSAl~GDNV~~~s~~mpWY~ 202 (431)
T COG2895 151 LVDYSE--EVFEAIVADYLAFAAQLG--------LKDVRFIPISALLGDNVVSKSENMPWYK 202 (431)
T ss_pred ccccCH--HHHHHHHHHHHHHHHHcC--------CCcceEEechhccCCcccccccCCCccc
Confidence 998664 244455443333222111 122467899999998864 3344543
No 320
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=1.9e-06 Score=70.67 Aligned_cols=150 Identities=21% Similarity=0.214 Sum_probs=87.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
.-=++|.|-.|+|||=|+.++.... ......+|+++|...-.- ++.
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~-------f~e~~~sTIGVDf~~rt~-----------e~~---------------- 54 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDT-------FTESYISTIGVDFKIRTV-----------ELD---------------- 54 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCC-------cchhhcceeeeEEEEEEe-----------eec----------------
Confidence 3346779999999999999998631 111222335555332111 111
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-----
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA----- 186 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~----- 186 (293)
.....+-|+||+|.-....+.... -..+++||+|.|.+.-..... ...|+..+.
T Consensus 55 ------gk~iKlQIWDTAGQERFrtit~sy--------YR~ahGii~vyDiT~~~SF~~-------v~~Wi~Ei~~~~~~ 113 (205)
T KOG0084|consen 55 ------GKTIKLQIWDTAGQERFRTITSSY--------YRGAHGIIFVYDITKQESFNN-------VKRWIQEIDRYASE 113 (205)
T ss_pred ------ceEEEEEeeeccccHHHhhhhHhh--------ccCCCeEEEEEEcccHHHhhh-------HHHHHHHhhhhccC
Confidence 122346799999985544333222 146889999999986433211 233443332
Q ss_pred -ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736 187 -FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE 252 (293)
Q Consensus 187 -~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~ 252 (293)
.+-++|-||+|+.+.... ..++.+.....++ ...++.+||++..++++.-
T Consensus 114 ~v~~lLVGNK~Dl~~~~~v--~~~~a~~fa~~~~--------------~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 114 NVPKLLVGNKCDLTEKRVV--STEEAQEFADELG--------------IPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred CCCeEEEeeccccHhheec--CHHHHHHHHHhcC--------------CcceeecccCCccCHHHHH
Confidence 256889999999876542 3333333333221 1227789999999887554
No 321
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.38 E-value=3.9e-07 Score=82.42 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=31.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~ 72 (293)
-+.|+|.||+||||+||+|+ +++.+.+++.||.|.
T Consensus 134 ~v~vvG~PNVGKSslIN~L~----~k~~~~~s~~PG~Tk 168 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLL----GKKVAKTSNRPGTTK 168 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHh----cccceeeCCCCceec
Confidence 38899999999999999999 888899999999743
No 322
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.38 E-value=2.4e-07 Score=79.98 Aligned_cols=124 Identities=16% Similarity=0.082 Sum_probs=79.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEc-CCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILN-EFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV 108 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~-d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~ 108 (293)
.+.|-+++.|..|+|||+|+|.+++.. .++-.+. .+|.+..+....
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k---~~~~t~k~K~g~Tq~in~f~------------------------------ 180 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVK---NIADTSKSKNGKTQAINHFH------------------------------ 180 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhh---hhhhhcCCCCccceeeeeee------------------------------
Confidence 456889999999999999999999631 1111111 333311111111
Q ss_pred HHHHHHHhhcCCCCEEEEecCC-----CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHH
Q 022736 109 QALEQLVQRKERLDHILLETTG-----LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIH 183 (293)
Q Consensus 109 ~~l~~l~~~~~~~d~iiidt~G-----~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~ 183 (293)
-+-.+.++|.|| +....+....-+...++.+...+-.+++++|++-..+..+.. +.+++.
T Consensus 181 ----------v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-----~i~~~g 245 (320)
T KOG2486|consen 181 ----------VGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNP-----EIAWLG 245 (320)
T ss_pred ----------ccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChH-----HHHHHh
Confidence 123578999999 332222222223344555556666789999998776665543 566777
Q ss_pred HHhccCEEEEeCCCCCCC
Q 022736 184 QIAFADVVILNKVDLVSP 201 (293)
Q Consensus 184 qi~~a~iivlNK~D~~~~ 201 (293)
+-.-|-.+|+||||....
T Consensus 246 e~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 246 ENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred hcCCCeEEeeehhhhhhh
Confidence 778899999999997643
No 323
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=6.9e-06 Score=64.28 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=95.4
Q ss_pred cCcccCCCCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchh--hhhcCCCCcchhhhhhccCcce
Q 022736 22 SNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCI 99 (293)
Q Consensus 22 ~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~--~~~~~~~~~~~~~~~~l~~gci 99 (293)
...++++..+. -+.|+|-..+|||+|+.+.+... -..+.++ +.|+|.. .+.
T Consensus 12 ~s~dqnFDymf-KlliiGnssvGKTSfl~ry~ddS--Ft~afvs-----TvGidFKvKTvy------------------- 64 (193)
T KOG0093|consen 12 DSIDQNFDYMF-KLLIIGNSSVGKTSFLFRYADDS--FTSAFVS-----TVGIDFKVKTVY------------------- 64 (193)
T ss_pred cccccccccee-eEEEEccCCccchhhhHHhhccc--cccceee-----eeeeeEEEeEee-------------------
Confidence 44556666656 45668999999999999998542 1112211 2344421 111
Q ss_pred eeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCch
Q 022736 100 CCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYP 179 (293)
Q Consensus 100 cc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~ 179 (293)
+...+.++-|+||+|+..-..+.-. -....+++|++.|.++-..... ..
T Consensus 65 ----------------r~~kRiklQiwDTagqEryrtiTTa--------yyRgamgfiLmyDitNeeSf~s-------vq 113 (193)
T KOG0093|consen 65 ----------------RSDKRIKLQIWDTAGQERYRTITTA--------YYRGAMGFILMYDITNEESFNS-------VQ 113 (193)
T ss_pred ----------------ecccEEEEEEEecccchhhhHHHHH--------HhhccceEEEEEecCCHHHHHH-------HH
Confidence 1123467789999997654433321 1245778999999987543221 12
Q ss_pred HHHHHH------hccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736 180 EAIHQI------AFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG 253 (293)
Q Consensus 180 ~~~~qi------~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~ 253 (293)
.+.-|+ ..+.++|-||||+-++.- ...++.+....++. -+.|..|++..-++.++-.
T Consensus 114 dw~tqIktysw~naqvilvgnKCDmd~eRv--is~e~g~~l~~~LG---------------fefFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 114 DWITQIKTYSWDNAQVILVGNKCDMDSERV--ISHERGRQLADQLG---------------FEFFETSAKENINVKQVFE 176 (193)
T ss_pred HHHHHheeeeccCceEEEEecccCCcccee--eeHHHHHHHHHHhC---------------hHHhhhcccccccHHHHHH
Confidence 233333 346789999999876432 34455555555442 3678899998888776544
Q ss_pred h
Q 022736 254 L 254 (293)
Q Consensus 254 ~ 254 (293)
.
T Consensus 177 ~ 177 (193)
T KOG0093|consen 177 R 177 (193)
T ss_pred H
Confidence 3
No 324
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=3.2e-07 Score=80.63 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=73.8
Q ss_pred EEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCCCCC
Q 022736 123 HILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLVSP 201 (293)
Q Consensus 123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~~~~ 201 (293)
+-|+|.||.. -++ ..++....-.|..++|+.|.....+-.- .+...++.-++.- .+|+-||+|+++.
T Consensus 88 VSfVDaPGHe---~LM-----ATMLsGAAlMDgAlLvIaANEpcPQPQT----~EHl~AleIigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 88 VSFVDAPGHE---TLM-----ATMLSGAALMDGALLVIAANEPCPQPQT----REHLMALEIIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred EEEeeCCchH---HHH-----HHHhcchhhhcceEEEEecCCCCCCCch----HHHHHHHhhhccceEEEEecccceecH
Confidence 6799999942 112 2334555567889999998653321110 1134445555544 4556699999988
Q ss_pred CCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhhccCC
Q 022736 202 ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKS 262 (293)
Q Consensus 202 ~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~~~~~ 262 (293)
++..+.+.++++.++.-.. .-.+++++||..+.|++.|.+++++.-..|
T Consensus 156 E~AlE~y~qIk~FvkGt~A------------e~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 156 ERALENYEQIKEFVKGTVA------------ENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHHHHHHHhccccc------------CCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 7544555666666653221 225789999999999999999998754333
No 325
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.37 E-value=6.5e-07 Score=81.68 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=35.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCC
Q 022736 119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 119 ~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~ 198 (293)
..++++++|.||+..+..-.+.++ +. ......|.+|.+.+..-...... .....++.+.+..+|-||+|.
T Consensus 84 ~~pnv~lWDlPG~gt~~f~~~~Yl-~~--~~~~~yD~fiii~s~rf~~ndv~-------La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 84 KFPNVTLWDLPGIGTPNFPPEEYL-KE--VKFYRYDFFIIISSERFTENDVQ-------LAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp S-TTEEEEEE--GGGSS--HHHHH-HH--TTGGG-SEEEEEESSS--HHHHH-------HHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCeEEeCCCCCCCCCCHHHHH-HH--ccccccCEEEEEeCCCCchhhHH-------HHHHHHHcCCcEEEEEecccc
Confidence 346899999999876533222222 11 12356676666655432222222 345667778899999999995
No 326
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=7.1e-07 Score=70.61 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=62.5
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH------hccCEEEE-e
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI------AFADVVIL-N 194 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi------~~a~iivl-N 194 (293)
..-++||+|......+.-+|+ ..+-+.+++.|-++-...+. ...|+.|+ +.||+++. |
T Consensus 68 hLQlWDTAGQERFRSLTTAFf--------RDAMGFlLiFDlT~eqSFLn-------vrnWlSQL~~hAYcE~PDivlcGN 132 (219)
T KOG0081|consen 68 HLQLWDTAGQERFRSLTTAFF--------RDAMGFLLIFDLTSEQSFLN-------VRNWLSQLQTHAYCENPDIVLCGN 132 (219)
T ss_pred EEeeeccccHHHHHHHHHHHH--------HhhccceEEEeccchHHHHH-------HHHHHHHHHHhhccCCCCEEEEcC
Confidence 456899999888777776665 23345688888876544433 23455555 45776655 9
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736 195 KVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG 253 (293)
Q Consensus 195 K~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~ 253 (293)
|+|+.+...+ .-++..++..++. -+.|.+||-+|.++++..+
T Consensus 133 K~DL~~~R~V--s~~qa~~La~kyg---------------lPYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 133 KADLEDQRVV--SEDQAAALADKYG---------------LPYFETSACTGTNVEKAVE 174 (219)
T ss_pred ccchhhhhhh--hHHHHHHHHHHhC---------------CCeeeeccccCcCHHHHHH
Confidence 9999875432 2233333333321 3467889999998764443
No 327
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.36 E-value=7.2e-07 Score=76.66 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccc--hHHHHhhhcccCCchHHHHHHh--ccCEEEEeC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKN--LLFQIDKYRHLSSYPEAIHQIA--FADVVILNK 195 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~--~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK 195 (293)
...+-++|.||........-.. ..-.-...+.++|+|+|+.. +...+... ..+.+.+.+.. ....+.+.|
T Consensus 47 ~~~l~iwD~pGq~~~~~~~~~~---~~~~if~~v~~LIyV~D~qs~~~~~~l~~~---~~~i~~l~~~sp~~~v~vfiHK 120 (232)
T PF04670_consen 47 FLPLNIWDCPGQDDFMENYFNS---QREEIFSNVGVLIYVFDAQSDDYDEDLAYL---SDCIEALRQYSPNIKVFVFIHK 120 (232)
T ss_dssp SCEEEEEEE-SSCSTTHTTHTC---CHHHHHCTESEEEEEEETT-STCHHHHHHH---HHHHHHHHHHSTT-EEEEEEE-
T ss_pred CcEEEEEEcCCccccccccccc---cHHHHHhccCEEEEEEEcccccHHHHHHHH---HHHHHHHHHhCCCCeEEEEEee
Confidence 3567899999976553331100 00111256788999999983 22222221 01122222221 235788999
Q ss_pred CCCCCCCCCcchHHHHHHHHH
Q 022736 196 VDLVSPERSGDSLDELEKEIH 216 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~ 216 (293)
+|++.++.+......+.+.+.
T Consensus 121 ~D~l~~~~r~~~~~~~~~~i~ 141 (232)
T PF04670_consen 121 MDLLSEDEREEIFRDIQQRIR 141 (232)
T ss_dssp CCCS-HHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 999987654344444444443
No 328
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=4.8e-06 Score=65.53 Aligned_cols=147 Identities=19% Similarity=0.210 Sum_probs=81.6
Q ss_pred EEEEecCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGK-HGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~-~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
+++.|+.|+|||-|+.++++.+ .+..-..|--+||+. ++.-+
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSr------IinVG------------------------------- 54 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSR------IVNVG------------------------------- 54 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecce------eeeec-------------------------------
Confidence 6779999999999999999752 111112233345541 11111
Q ss_pred HHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEE-
Q 022736 114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVI- 192 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iiv- 192 (293)
....+.-|+||+|......+.+... ..+.+.++|.|.++....... ..+..-.+.+.-+.++|
T Consensus 55 ----gK~vKLQIWDTAGQErFRSVtRsYY--------RGAAGAlLVYD~TsrdsfnaL----tnWL~DaR~lAs~nIvvi 118 (214)
T KOG0086|consen 55 ----GKTVKLQIWDTAGQERFRSVTRSYY--------RGAAGALLVYDITSRDSFNAL----TNWLTDARTLASPNIVVI 118 (214)
T ss_pred ----CcEEEEEEeecccHHHHHHHHHHHh--------ccccceEEEEeccchhhHHHH----HHHHHHHHhhCCCcEEEE
Confidence 0123467999999888777776543 334567888998865443211 00122223344444444
Q ss_pred --EeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhh
Q 022736 193 --LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL 251 (293)
Q Consensus 193 --lNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l 251 (293)
-||.|+-++.++ .-++ .-+.... +. --.+.+|++||+++++-
T Consensus 119 L~GnKkDL~~~R~V----tflE-As~FaqE--------ne----l~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 119 LCGNKKDLDPEREV----TFLE-ASRFAQE--------NE----LMFLETSALTGENVEEA 162 (214)
T ss_pred EeCChhhcChhhhh----hHHH-HHhhhcc--------cc----eeeeeecccccccHHHH
Confidence 499999776542 1111 1111100 00 12356899999998743
No 329
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.34 E-value=7.1e-07 Score=91.08 Aligned_cols=124 Identities=19% Similarity=0.124 Sum_probs=67.3
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
.+.+.|+||||......+. ......+|.+++|+|+.......... ....+.....|.++++||+|+.
T Consensus 525 ~p~i~fiDTPGhe~F~~lr--------~~g~~~aDivlLVVDa~~Gi~~qT~e-----~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 525 IPGLLFIDTPGHEAFTSLR--------KRGGSLADLAVLVVDINEGFKPQTIE-----AINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred cCcEEEEECCCcHHHHHHH--------HhhcccCCEEEEEEECcccCCHhHHH-----HHHHHHHcCCCEEEEEECCCCc
Confidence 3568999999954332221 11234578999999998643222211 2233444466899999999987
Q ss_pred CCCCC--------------cchHHHHHHHHH-------hhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhh
Q 022736 200 SPERS--------------GDSLDELEKEIH-------EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 200 ~~~~~--------------~~~~~~~~~~l~-------~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
..... .....++...+. +..-.+..+.........-.++++||++|+|+++|..++.
T Consensus 592 ~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~ 669 (1049)
T PRK14845 592 PGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA 669 (1049)
T ss_pred cccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 43210 011222222211 1110010000001111235678999999999999988874
No 330
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.33 E-value=8.5e-07 Score=70.49 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=25.9
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~ 70 (293)
.++++|.+|+|||||+|+|+ +.+...+++.+|.
T Consensus 85 ~~~~~G~~~vGKstlin~l~----~~~~~~~~~~~~~ 117 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALV----GKKKVSVSATPGK 117 (141)
T ss_pred EEEEECCCCCCHHHHHHHHh----CCCceeeCCCCCc
Confidence 68889999999999999999 4444455666664
No 331
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=1.5e-06 Score=85.48 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=86.6
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCc----cccchhhhhcCCCCcchhhhhhccCcceeeccc
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE----IGVERAMINEGEGGALVEEWVELANGCICCTVK 104 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~----~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~ 104 (293)
..++.-+.|+|...+|||||..+|+-.. ++++. .|+. ...|....+. +.-+.+...|++|.-.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~t-----G~i~k-~G~v~~g~~~~D~~e~Eq-------eRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYT-----GIISK-IGEVHDGAATMDWMEQEQ-------ERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHc-----CCcCC-CccccCCCccCCCcHHHH-------hcCCEEeeeeeEEEEc
Confidence 3467779999999999999999998531 12222 3331 1122211111 1123445556655333
Q ss_pred hhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHH
Q 022736 105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQ 184 (293)
Q Consensus 105 ~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~q 184 (293)
+ +..+-||||||..+...-. .++..-+|+.|.|+|+......... ..++|
T Consensus 74 ~--------------~~~iNlIDTPGHVDFt~EV--------~rslrvlDgavvVvdaveGV~~QTE--------tv~rq 123 (697)
T COG0480 74 G--------------DYRINLIDTPGHVDFTIEV--------ERSLRVLDGAVVVVDAVEGVEPQTE--------TVWRQ 123 (697)
T ss_pred C--------------ceEEEEeCCCCccccHHHH--------HHHHHhhcceEEEEECCCCeeecHH--------HHHHH
Confidence 2 3678899999988753222 2344568999999999876544322 23333
Q ss_pred H---hccCEEEEeCCCCCCCCCCcchHHHHHHHHH
Q 022736 185 I---AFADVVILNKVDLVSPERSGDSLDELEKEIH 216 (293)
Q Consensus 185 i---~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~ 216 (293)
. ..|-++++||+|.+..+- .....++...+.
T Consensus 124 a~~~~vp~i~fiNKmDR~~a~~-~~~~~~l~~~l~ 157 (697)
T COG0480 124 ADKYGVPRILFVNKMDRLGADF-YLVVEQLKERLG 157 (697)
T ss_pred HhhcCCCeEEEEECccccccCh-hhhHHHHHHHhC
Confidence 3 448899999999987642 134445555544
No 332
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2.3e-06 Score=66.41 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=67.6
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH--HHHhc-cCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI--HQIAF-ADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~--~qi~~-a~iivlNK~ 196 (293)
+..+-+.|..|.....++...+. ....++|||+|+...........+ .-.++ .|+.. +.+|..||-
T Consensus 60 N~kfNvwdvGGqd~iRplWrhYy--------~gtqglIFV~Dsa~~dr~eeAr~E---Lh~ii~~~em~~~~~LvlANkQ 128 (180)
T KOG0071|consen 60 NVKFNVWDVGGQDKIRPLWRHYY--------TGTQGLIFVVDSADRDRIEEARNE---LHRIINDREMRDAIILILANKQ 128 (180)
T ss_pred eeEEeeeeccCchhhhHHHHhhc--------cCCceEEEEEeccchhhHHHHHHH---HHHHhCCHhhhcceEEEEecCc
Confidence 44577899999887777775433 234568999999765322111111 11112 23333 345566999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
|+.++. ...++.+.++ ..+ ++. ...-+.+.++.+|.|..+-..|+...
T Consensus 129 Dlp~A~----~pqei~d~le----Le~-~r~-----~~W~vqp~~a~~gdgL~eglswlsnn 176 (180)
T KOG0071|consen 129 DLPDAM----KPQEIQDKLE----LER-IRD-----RNWYVQPSCALSGDGLKEGLSWLSNN 176 (180)
T ss_pred cccccc----CHHHHHHHhc----ccc-ccC-----CccEeeccccccchhHHHHHHHHHhh
Confidence 998765 3466666553 111 111 12456788999999988887887543
No 333
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.29 E-value=1.2e-06 Score=69.56 Aligned_cols=143 Identities=19% Similarity=0.219 Sum_probs=83.0
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
++++|-.|+|||+|+-++....... ...+++++|...-. +.+
T Consensus 14 iLlIGeSGVGKSSLllrFv~~~fd~-------~~~~tIGvDFkvk~-----------m~v-------------------- 55 (209)
T KOG0080|consen 14 ILLIGESGVGKSSLLLRFVSNTFDD-------LHPTTIGVDFKVKV-----------MQV-------------------- 55 (209)
T ss_pred EEEEccCCccHHHHHHHHHhcccCc-------cCCceeeeeEEEEE-----------EEE--------------------
Confidence 6678999999999999999642111 01112344422100 000
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-------
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF------- 187 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~------- 187 (293)
...+.++.|+||+|......+...+. ..+.++|+|.|.+....... ..-|++.+..
T Consensus 56 --dg~~~KlaiWDTAGqErFRtLTpSyy--------RgaqGiIlVYDVT~Rdtf~k-------Ld~W~~Eld~Ystn~di 118 (209)
T KOG0080|consen 56 --DGKRLKLAIWDTAGQERFRTLTPSYY--------RGAQGIILVYDVTSRDTFVK-------LDIWLKELDLYSTNPDI 118 (209)
T ss_pred --cCceEEEEEEeccchHhhhccCHhHh--------ccCceeEEEEEccchhhHHh-------HHHHHHHHHhhcCCccH
Confidence 01345688999999766544443322 34567899999986544322 1223333321
Q ss_pred cCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhh
Q 022736 188 ADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT 249 (293)
Q Consensus 188 a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~ 249 (293)
..++|-||+|.-++.. ...++-.+..+..+ -.++.+||++.+++.
T Consensus 119 ikmlVgNKiDkes~R~--V~reEG~kfAr~h~---------------~LFiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 119 IKMLVGNKIDKESERV--VDREEGLKFARKHR---------------CLFIECSAKTRENVQ 163 (209)
T ss_pred hHhhhcccccchhccc--ccHHHHHHHHHhhC---------------cEEEEcchhhhccHH
Confidence 2467889999654322 34555555555443 234678999999865
No 334
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.28 E-value=2.4e-06 Score=73.34 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.3
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHc
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..++-+|.|+|++++|||||+|.|+.
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~ 29 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFG 29 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhC
Confidence 45678899999999999999999994
No 335
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.27 E-value=1e-06 Score=78.52 Aligned_cols=36 Identities=39% Similarity=0.440 Sum_probs=29.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEE 71 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~ 71 (293)
...++++|.||+|||||+|+|. +.+.+.+.+.+|.|
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~----~~~~~~~~~~~g~T 156 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLA----GKKIAKTGNRPGVT 156 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHh----cCCccccCCCCCeE
Confidence 3468889999999999999999 66666677777763
No 336
>COG2403 Predicted GTPase [General function prediction only]
Probab=98.27 E-value=7e-05 Score=67.33 Aligned_cols=167 Identities=28% Similarity=0.356 Sum_probs=100.2
Q ss_pred CceeEEEEEe-cCCCcHHHHHHHHHcc--CCCCeEEEEEcCC---CCccccchhhhhc----CCCCcchhhhhhc----c
Q 022736 30 VSVGVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNEF---GEEIGVERAMINE----GEGGALVEEWVEL----A 95 (293)
Q Consensus 30 ~~~pvi~i~G-~~gaGKTTlin~ll~~--~~~~~vavv~~d~---g~~~~~d~~~~~~----~~~~~~~~~~~~l----~ 95 (293)
...|++.|+| ..|+|||+.-..+.+. ..|.++.++..-. |-++.++-.++.. +......++.-++ .
T Consensus 124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPmiy~~~~ieitve~~~k~edld~ha~t~eereeye~~I~ 203 (449)
T COG2403 124 LEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPMIYRGDRIEITVERLAKLEDLDRHAATDEEREEYESYIP 203 (449)
T ss_pred hcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCceecCCchhhhHHHHhCHhhccccccchhhHHHHhhccc
Confidence 4578888777 5799999998888763 5578887776532 1111111111111 1111122111111 1
Q ss_pred Cc-ceeeccchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcc
Q 022736 96 NG-CICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRH 174 (293)
Q Consensus 96 ~g-cicc~~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~ 174 (293)
-| .... .-++...+++-.. .-|+|++|-.|-.-| .++.|.-|+|+|+..........
T Consensus 204 tg~~vlA--Gvdy~~vlke~~~---~aD~IlwdGgnndfP---------------fvkpd~~Ivvvda~rpg~ei~~~-- 261 (449)
T COG2403 204 TGGGVLA--GVDYGTVLKEGEK---EADFILWDGGNNDFP---------------FVKPDLHIVVVDALRPGEEIGSF-- 261 (449)
T ss_pred cccceEe--eeeHHHHHHHHhh---hccEEEEeCCCCCCC---------------cccCCeeEEEecCCCCchhhccC--
Confidence 11 1110 1123333333221 248999998885544 15677889999998755444332
Q ss_pred cCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEe
Q 022736 175 LSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS 227 (293)
Q Consensus 175 ~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~ 227 (293)
+.- ..+..||++++||+|-...+ ...++.+.++++||.|.++.+
T Consensus 262 ----pGe-~~irlAD~VIItkveea~~~----kvrkI~~~I~~iNP~A~Vi~~ 305 (449)
T COG2403 262 ----PGE-LRIRLADLVIITKVEEAMAE----KVRKIVRNIEEINPKAEVILA 305 (449)
T ss_pred ----CCc-eeeeeccEEEEecccccchH----HHHHHHHHHHhhCCCcEEEec
Confidence 111 23678999999999988765 578999999999999999886
No 337
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.24 E-value=1.6e-06 Score=80.58 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=28.0
Q ss_pred CEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (293)
Q Consensus 122 d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~ 163 (293)
.+-|+||||+......... +...++.....+|.+++|+|+.
T Consensus 73 ~i~i~D~aGl~~ga~~g~g-lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 73 PVELIDVAGLVPGAHEGRG-LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eEEEEEcCCcCCCccchhh-HHHHHHHHHHHCCEEEEEEeCC
Confidence 4669999998654332222 1234456678899999999996
No 338
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.23 E-value=8.5e-06 Score=63.84 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=61.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-----ccCEEEEeC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-----FADVVILNK 195 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-----~a~iivlNK 195 (293)
.+.-|+||+|......+...++ ....++++|.|.++...... ...|+..++ .+-++|-||
T Consensus 57 VkLqIwDtAGqErFrtitstyy--------rgthgv~vVYDVTn~ESF~N-------v~rWLeei~~ncdsv~~vLVGNK 121 (198)
T KOG0079|consen 57 VKLQIWDTAGQERFRTITSTYY--------RGTHGVIVVYDVTNGESFNN-------VKRWLEEIRNNCDSVPKVLVGNK 121 (198)
T ss_pred EEEEEeecccHHHHHHHHHHHc--------cCCceEEEEEECcchhhhHh-------HHHHHHHHHhcCccccceecccC
Confidence 4567999999766666665443 34567899999988665432 233444443 245899999
Q ss_pred CCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhh
Q 022736 196 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLE 252 (293)
Q Consensus 196 ~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~ 252 (293)
+|...... ..-+..++...+.+ -++|.+|++..++++..-
T Consensus 122 ~d~~~Rrv--V~t~dAr~~A~~mg---------------ie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 122 NDDPERRV--VDTEDARAFALQMG---------------IELFETSAKENENVEAMF 161 (198)
T ss_pred CCCcccee--eehHHHHHHHHhcC---------------chheehhhhhcccchHHH
Confidence 99765432 12233333322221 357888998888876543
No 339
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.23 E-value=3.1e-06 Score=77.86 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=57.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
-+.++|.+|+|||||+|+|++...+ .+.+.++..+|+|.++....+
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~--------------------------------- 202 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL--------------------------------- 202 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---------------------------------
Confidence 5788999999999999999975322 345677788886433211100
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcc--hhhccccccccEEEEEcccc
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLD--DQLESAVRLDSIITVVDAKN 164 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~--~~~~~~~~~d~vi~vvDa~~ 164 (293)
+.++.++||||+..+..+...+-.+ ..+.....+..+++.+|...
T Consensus 203 -------~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q 249 (360)
T TIGR03597 203 -------DDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQ 249 (360)
T ss_pred -------CCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCC
Confidence 1235799999998776554322110 01223345667788888754
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.21 E-value=1.2e-06 Score=73.13 Aligned_cols=38 Identities=32% Similarity=0.423 Sum_probs=27.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCC----eEEEEEcCCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGK----RIAVILNEFGE 70 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~----~vavv~~d~g~ 70 (293)
..+.++|.+|+|||||+|+|+...... ..+.++..+|+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gt 169 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGT 169 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCe
Confidence 468899999999999999999642211 22345566665
No 341
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=3.1e-06 Score=77.56 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC-EEEEeCCCCC
Q 022736 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD-VVILNKVDLV 199 (293)
Q Consensus 121 ~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~-iivlNK~D~~ 199 (293)
.-.-|||.||..+. ....+....-+|..+++||+......... +...+++.++... ++|+||+|+.
T Consensus 50 ~~~~fIDvpgh~~~--------i~~miag~~~~d~alLvV~~deGl~~qtg-----EhL~iLdllgi~~giivltk~D~~ 116 (447)
T COG3276 50 GVMGFIDVPGHPDF--------ISNLLAGLGGIDYALLVVAADEGLMAQTG-----EHLLILDLLGIKNGIIVLTKADRV 116 (447)
T ss_pred CceEEeeCCCcHHH--------HHHHHhhhcCCceEEEEEeCccCcchhhH-----HHHHHHHhcCCCceEEEEeccccc
Confidence 35679999997643 12334555678889999999654433221 2455677788776 9999999999
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 200 SPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+..+ +...++++-.... +.-.++|.+|+++|+|+++|...+.+.
T Consensus 117 d~~r-------~e~~i~~Il~~l~--------l~~~~i~~~s~~~g~GI~~Lk~~l~~L 160 (447)
T COG3276 117 DEAR-------IEQKIKQILADLS--------LANAKIFKTSAKTGRGIEELKNELIDL 160 (447)
T ss_pred cHHH-------HHHHHHHHHhhcc--------cccccccccccccCCCHHHHHHHHHHh
Confidence 7643 3333333222211 122467999999999999998877543
No 342
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.20 E-value=1.9e-06 Score=69.52 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=26.9
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~ 70 (293)
+...++++|.+|+|||||+|.|++ .+...+...+|+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~----~~~~~~~~~~~~ 134 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLN----KLKLKVGNVPGT 134 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHc----cccccccCCCCc
Confidence 456688999999999999999994 333335555554
No 343
>PTZ00099 rab6; Provisional
Probab=98.19 E-value=8.5e-06 Score=67.32 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=66.1
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVD 197 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D 197 (293)
..++.|+||+|......+...++ ..+|++|+|+|.+......... . .+....... ..+.++|.||+|
T Consensus 28 ~v~l~iwDt~G~e~~~~~~~~~~--------~~ad~~ilv~D~t~~~sf~~~~-~--w~~~i~~~~~~~~piilVgNK~D 96 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYI--------RDSAAAIVVYDITNRQSFENTT-K--WIQDILNERGKDVIIALVGNKTD 96 (176)
T ss_pred EEEEEEEECCChHHhhhccHHHh--------CCCcEEEEEEECCCHHHHHHHH-H--HHHHHHHhcCCCCeEEEEEECcc
Confidence 35688999999866554433222 4688999999998743321110 0 011111111 234578999999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
+.+.... ...+.....+..+ ..++.+||++|+|++++..|+...
T Consensus 97 L~~~~~v--~~~e~~~~~~~~~---------------~~~~e~SAk~g~nV~~lf~~l~~~ 140 (176)
T PTZ00099 97 LGDLRKV--TYEEGMQKAQEYN---------------TMFHETSAKAGHNIKVLFKKIAAK 140 (176)
T ss_pred cccccCC--CHHHHHHHHHHcC---------------CEEEEEECCCCCCHHHHHHHHHHH
Confidence 8753321 2233333333221 135789999999999999888653
No 344
>PRK13796 GTPase YqeH; Provisional
Probab=98.19 E-value=2.4e-06 Score=78.72 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=30.0
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCC-eEEEEEcCCCCcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGK-RIAVILNEFGEEI 72 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~-~vavv~~d~g~~~ 72 (293)
-+.++|.+|+|||||+|+|++...+. +.+.++.-+|+|.
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~ 201 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTL 201 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccc
Confidence 47789999999999999999753232 4556788888743
No 345
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.19 E-value=5.2e-07 Score=72.93 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++|.+|+|||||+|.|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 78999999999999999999964
No 346
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.18 E-value=3.8e-06 Score=74.70 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=32.6
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CC-C-CeEEEEEcCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KH-G-KRIAVILNEFG 69 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~-~-~~vavv~~d~g 69 (293)
+..+++|+|+.|+||||++..|... .. + .+++++..|+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 4568999999999999999999764 22 4 89999998874
No 347
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.17 E-value=1.9e-06 Score=76.46 Aligned_cols=35 Identities=37% Similarity=0.468 Sum_probs=27.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~ 70 (293)
...++++|.||+|||||+|+|. +.+.+.+.+.+|.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~----~~~~~~~~~~~g~ 152 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLA----GKKVAKVGNRPGV 152 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHh----CCCccccCCCCCe
Confidence 3458889999999999999999 5555556666775
No 348
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=9.3e-06 Score=63.66 Aligned_cols=147 Identities=24% Similarity=0.334 Sum_probs=87.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
.-|+++|-.|+|||-|++++.+. .+| .|+++++|..+- .+++++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppg---------qgatigvdfmik-----------tvev~g-------------- 53 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPG---------QGATIGVDFMIK-----------TVEVNG-------------- 53 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCC---------CCceeeeeEEEE-----------EEEECC--------------
Confidence 34778999999999999999874 233 233344443221 112211
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-cc-
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-FA- 188 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~a- 188 (293)
...+.-|+||+|......+.+... ..+..+|++.|.+--. .....++|++.++ +|
T Consensus 54 --------ekiklqiwdtagqerfrsitqsyy--------rsahalilvydiscqp-------sfdclpewlreie~yan 110 (213)
T KOG0095|consen 54 --------EKIKLQIWDTAGQERFRSITQSYY--------RSAHALILVYDISCQP-------SFDCLPEWLREIEQYAN 110 (213)
T ss_pred --------eEEEEEEeeccchHHHHHHHHHHh--------hhcceEEEEEecccCc-------chhhhHHHHHHHHHHhh
Confidence 234567999999887777775443 3455678888875321 1122466776664 23
Q ss_pred ----CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhh
Q 022736 189 ----DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG 253 (293)
Q Consensus 189 ----~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~ 253 (293)
-++|-||+|+.+..+ ...++-.... .+ ...-.+.+||+..++++.|-.
T Consensus 111 ~kvlkilvgnk~d~~drre---vp~qigeefs----~~----------qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 111 NKVLKILVGNKIDLADRRE---VPQQIGEEFS----EA----------QDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred cceEEEeeccccchhhhhh---hhHHHHHHHH----Hh----------hhhhhhhhcccchhhHHHHHH
Confidence 477889999886542 1222222211 11 112246789999999887753
No 349
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=7e-06 Score=77.43 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhh--cccCCchHHHHHHhc-cCEEEEeCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKY--RHLSSYPEAIHQIAF-ADVVILNKV 196 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~--~~~~~~~~~~~qi~~-a~iivlNK~ 196 (293)
..-+.|+|+||..+.- -.++.....+|..++|||++......... ....+....++-++. -.++++||+
T Consensus 254 ~~~~tliDaPGhkdFi--------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKm 325 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFI--------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKM 325 (603)
T ss_pred ceeEEEecCCCccccc--------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecc
Confidence 4568899999955432 22345557788999999998654332221 111222333444443 368889999
Q ss_pred CCCCCCCCcchHHHHHHHHHhhc-CCCEEEEeecCCCCchhhcccccCCcchhh------hhhhhhhh
Q 022736 197 DLVSPERSGDSLDELEKEIHEIN-SLAHVIRSVRCQVDLSEVLNCRAYDATHVT------RLEGLLEE 257 (293)
Q Consensus 197 D~~~~~~~~~~~~~~~~~l~~ln-p~a~i~~~~~~~~~~~~i~~~sa~~~~~~~------~l~~~l~~ 257 (293)
|+++=.+ ...++++..|...- ..+...+. --.++|+|+++|+|+- +|.+|...
T Consensus 326 D~V~Wsq--~RF~eIk~~l~~fL~~~~gf~es------~v~FIPiSGl~GeNL~k~~~~~~l~~WY~G 385 (603)
T KOG0458|consen 326 DLVSWSQ--DRFEEIKNKLSSFLKESCGFKES------SVKFIPISGLSGENLIKIEQENELSQWYKG 385 (603)
T ss_pred cccCccH--HHHHHHHHHHHHHHHHhcCcccC------CcceEecccccCCcccccccchhhhhhhcC
Confidence 9997443 23455555555433 22222211 1257899999999853 56667654
No 350
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.13 E-value=5.1e-06 Score=67.19 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=34.0
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
+++|+.|+|+.|||||||+.+|++. ..|.++++|.+.-.
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 3689999999999999999999885 56899999987654
No 351
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.11 E-value=3.1e-06 Score=78.72 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=33.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCcc
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~ 72 (293)
.-+|+++|+||+||||+||+|. |.|..-|+..||.|-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLv----G~KkVsVS~TPGkTK 350 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALV----GRKKVSVSSTPGKTK 350 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHh----cCceeeeecCCCCcc
Confidence 4568899999999999999999 888889999999843
No 352
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=98.08 E-value=9.5e-05 Score=60.46 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=73.5
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
+.+..+-.|+||||+.-.|... ..|+++.++..|+.. ..+... ... . .....+...+
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~-~~~~~~-~~~-~------------------~~~~~l~~~~ 60 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG-PSIPKM-WRG-P------------------MKMGAIKQFL 60 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC-CCchHH-HhC-c------------------chHHHHHHHH
Confidence 4567889999999999888663 468999999998864 111111 100 0 0011122222
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CE
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DV 190 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~i 190 (293)
..+. ..++|+||||||+........ . .....+|.+++++.+.......- ..+...+.+...+ ..
T Consensus 61 ~~~~--~~~yD~VIiD~pp~~~~~~~~--~------~~~~~ad~viiV~~p~~~s~~~~-----~~~~~~l~~~~~~~~g 125 (169)
T cd02037 61 TDVD--WGELDYLVIDMPPGTGDEHLT--L------AQSLPIDGAVIVTTPQEVALDDV-----RKAIDMFKKVNIPILG 125 (169)
T ss_pred HHhh--cCCCCEEEEeCCCCCcHHHHH--H------HhccCCCeEEEEECCchhhHHHH-----HHHHHHHHhcCCCeEE
Confidence 2221 257999999999865432211 0 01135688899988764322111 0123344444443 46
Q ss_pred EEEeCCCCC
Q 022736 191 VILNKVDLV 199 (293)
Q Consensus 191 ivlNK~D~~ 199 (293)
+|+|+.+..
T Consensus 126 vv~N~~~~~ 134 (169)
T cd02037 126 VVENMSYFV 134 (169)
T ss_pred EEEcCCccc
Confidence 789998754
No 353
>PRK12289 GTPase RsgA; Reviewed
Probab=98.08 E-value=3.6e-06 Score=76.88 Aligned_cols=21 Identities=43% Similarity=0.752 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 022736 34 VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++|+|++|+|||||||+|+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcC
Confidence 589999999999999999994
No 354
>PRK12288 GTPase RsgA; Reviewed
Probab=98.06 E-value=3.7e-06 Score=76.70 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHc
Q 022736 34 VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++|+|.+|+|||||+|+|+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcc
Confidence 588999999999999999994
No 355
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.05 E-value=1.5e-05 Score=70.30 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=54.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC---ccccchhhhhcCCCCcchhhhhhc-cCcceeeccch
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE---EIGVERAMINEGEGGALVEEWVEL-ANGCICCTVKH 105 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~---~~~~d~~~~~~~~~~~~~~~~~~l-~~gcicc~~~~ 105 (293)
++++.|+|+.|||||||+.+|+.. ..| +++++.++... ..+-|.......... .+..+ .+++.+-.-..
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~----~v~~~s~~~~~~~~~~~ 75 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHFDAGAD----VVYGLTDGEWVASGRDR 75 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHHHCCCc----EEEEecCCeEEEEecCC
Confidence 368999999999999999999885 457 89999998632 012232222221100 00001 11222211223
Q ss_pred hHHHHHHHHHhhcCCCCEEEEecCCCC
Q 022736 106 SLVQALEQLVQRKERLDHILLETTGLA 132 (293)
Q Consensus 106 ~l~~~l~~l~~~~~~~d~iiidt~G~~ 132 (293)
++.+.+..+. .+.|++|||+.+-.
T Consensus 76 ~l~~~l~~l~---~~~D~vlVEG~k~~ 99 (274)
T PRK14493 76 SLDDALDDLA---PGMDYAVVEGFKDS 99 (274)
T ss_pred CHHHHHHhhC---cCCCEEEEECCCCC
Confidence 4555554432 36899999999854
No 356
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.05 E-value=3.3e-06 Score=74.50 Aligned_cols=36 Identities=36% Similarity=0.551 Sum_probs=26.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG 69 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g 69 (293)
.+.+++|.+|+|||||+|+|+.+. ..++.-|+...|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~-~~~t~eIS~~~~ 200 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPEL-NQKTGEISEKLG 200 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchh-hhhhhhhcccCC
Confidence 389999999999999999998532 344555555443
No 357
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.04 E-value=1.7e-05 Score=71.36 Aligned_cols=91 Identities=12% Similarity=0.287 Sum_probs=50.9
Q ss_pred CCCEEEEecCCCCCc-------HHHHHhh-------hcch------hhccccccccEEEEEcccc-hHHHHhhhcccCCc
Q 022736 120 RLDHILLETTGLANP-------APLASVL-------WLDD------QLESAVRLDSIITVVDAKN-LLFQIDKYRHLSSY 178 (293)
Q Consensus 120 ~~d~iiidt~G~~~~-------~~~~~~~-------~~~~------~~~~~~~~d~vi~vvDa~~-~~~~~~~~~~~~~~ 178 (293)
..++.+|||||+.+. .++...+ +.+. ..-...+++++++.+-++. ....++
T Consensus 81 ~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~D-------- 152 (373)
T COG5019 81 HLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLD-------- 152 (373)
T ss_pred EEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHH--------
Confidence 356789999997753 2222111 1000 0122347888999998653 333333
Q ss_pred hHHHHHHhc--cCEEEEeCCCCCCCCCCcchHHHHHHHHHhh
Q 022736 179 PEAIHQIAF--ADVVILNKVDLVSPERSGDSLDELEKEIHEI 218 (293)
Q Consensus 179 ~~~~~qi~~--a~iivlNK~D~~~~~~~~~~~~~~~~~l~~l 218 (293)
.+.+.++.. ..+-|+.|+|....+++..-..++++.+...
T Consensus 153 Ie~Mk~ls~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~ 194 (373)
T COG5019 153 IEAMKRLSKRVNLIPVIAKADTLTDDELAEFKERIREDLEQY 194 (373)
T ss_pred HHHHHHHhcccCeeeeeeccccCCHHHHHHHHHHHHHHHHHh
Confidence 234444432 3678999999999876533444444444444
No 358
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.04 E-value=8.8e-06 Score=74.31 Aligned_cols=102 Identities=20% Similarity=0.125 Sum_probs=58.7
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
++|+|.||+|||||+|.|.+. +++-+.+.|-+|.......+ . ..+.-.+.|..+
T Consensus 5 ~GivGlPn~GKSTlfnaLT~~----~~~~~a~ypftTi~p~~g~v-------------~---------v~d~r~d~L~~~ 58 (368)
T TIGR00092 5 GGIVGLPNVGKSTLFAATTNL----LGNEAANPPFTTIEPNAGVV-------------N---------PSDPRLDLLAIY 58 (368)
T ss_pred EEEECCCCCChHHHHHHHhCC----CccccCCCCCCCCCCceeEE-------------E---------echhHHHHHHHH
Confidence 578999999999999999953 33223343433121111000 0 111122333333
Q ss_pred Hhhc--CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736 115 VQRK--ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (293)
Q Consensus 115 ~~~~--~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~ 163 (293)
.... ....+.++|.||+.........+ ....+.....+|.++.|||+.
T Consensus 59 ~~~~~~~~a~i~~~DiaGlv~gAs~g~Gl-gn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 59 IKPEKVPPTTTEFVDIAGLVGGASKGEGL-GNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hCCcCcCCceEEEEeccccccchhcccCc-chHHHHHHHhCCEEEEEEeCC
Confidence 3211 23467899999987755443322 133466778899999999984
No 359
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=7.6e-06 Score=75.56 Aligned_cols=158 Identities=25% Similarity=0.281 Sum_probs=86.0
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHc--cCCCCeEEEEEcCC---CCc--cccchhhhhcCCCCcchhhhhhccCcceeec
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEF---GEE--IGVERAMINEGEGGALVEEWVELANGCICCT 102 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~--~~~~~~vavv~~d~---g~~--~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~ 102 (293)
.++=+|.++|..|+||||=+.++.- .+.+.+|.|..+|. |+- ..+....+..- .+.. .+..+-.-|
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l-~~~~-v~lfekGYg----- 448 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSAL-HGTM-VELFEKGYG----- 448 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHh-ccch-hHHHhhhcC-----
Confidence 3677899999999999999988743 13367888888874 220 01111111100 0000 011111111
Q ss_pred cchhHHHHHHHH-HhhcCCCCEEEEecCC-CCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchH
Q 022736 103 VKHSLVQALEQL-VQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPE 180 (293)
Q Consensus 103 ~~~~l~~~l~~l-~~~~~~~d~iiidt~G-~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~ 180 (293)
.+.-.-+...+ ..+..++|+|+|||+| +.+..+++..+. -+...-+.|.|++|-.|--+.+-.+... .+-.
T Consensus 449 -kd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~---k~~~~~~pd~i~~vgealvg~dsv~q~~---~fn~ 521 (587)
T KOG0781|consen 449 -KDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLA---KLIKVNKPDLILFVGEALVGNDSVDQLK---KFNR 521 (587)
T ss_pred -CChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHH---HHHhcCCCceEEEehhhhhCcHHHHHHH---HHHH
Confidence 01111111111 2345789999999999 677777765432 1334467898999877754433333211 1222
Q ss_pred HHHHH---hccCEEEEeCCCCCCC
Q 022736 181 AIHQI---AFADVVILNKVDLVSP 201 (293)
Q Consensus 181 ~~~qi---~~a~iivlNK~D~~~~ 201 (293)
++... +.-|-++++|+|.+++
T Consensus 522 al~~~~~~r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 522 ALADHSTPRLIDGILLTKFDTVDD 545 (587)
T ss_pred HHhcCCCccccceEEEEeccchhh
Confidence 22222 2348999999998874
No 360
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.97 E-value=4e-05 Score=58.83 Aligned_cols=92 Identities=23% Similarity=0.257 Sum_probs=56.4
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcc---hhhhhhccCcceeeccchhHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGAL---VEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~---~~~~~~l~~gcicc~~~~~l~~ 109 (293)
++++|..|+||||+...+... ..++++.++..|+.. +............. .-.......||.|-... .+.+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~~~---~~~~~~~~~~~~~~~i~~g~~~~~~~g~~~~~n~-~~~~ 77 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADPDD---LPERLSVEVGEIKLLLVMGMGRPGGEGCYCPENA-LLNA 77 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCchh---hHHHHhhccCCceEEEEecccccCCCCCEehhhH-HHHH
Confidence 678999999999999888663 458889999999843 22222222111111 12223346788887542 2233
Q ss_pred HHHHHHhhcCCCCEEEEecCCCC
Q 022736 110 ALEQLVQRKERLDHILLETTGLA 132 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~ 132 (293)
.+..+. ..++|++++||++-.
T Consensus 78 ~l~~~~--~~~~~~vivDt~ag~ 98 (116)
T cd02034 78 LLRHLV--LTRDEQVVVDTEAGL 98 (116)
T ss_pred HHHHeE--ccCCCEEEEecHHHH
Confidence 333222 356789999999743
No 361
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=1.2e-05 Score=72.54 Aligned_cols=103 Identities=24% Similarity=0.249 Sum_probs=59.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.-++|+|.||+|||||+|++.+. . +-+.|.|=+|+......+ .++. | -...|.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~----~-a~~aNYPF~TIePN~Giv-------------~v~d-~--------rl~~L~ 55 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKA----G-AEIANYPFCTIEPNVGVV-------------YVPD-C--------RLDELA 55 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcC----C-ccccCCCcccccCCeeEE-------------ecCc-h--------HHHHHH
Confidence 34789999999999999999953 2 223333322222111111 1111 1 111222
Q ss_pred HHHhhc---CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736 113 QLVQRK---ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (293)
Q Consensus 113 ~l~~~~---~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~ 163 (293)
.+..+. -...+=|+|.+|+...++..+.+. ...+....++|.++.|||+.
T Consensus 56 ~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLG-NkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 56 EIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLG-NKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred HhcCCCCcEEeeeeEEEEecccCCCcccCCCcc-hHHHHhhhhcCeEEEEEEec
Confidence 222211 123456899999877665554433 45577888999999999987
No 362
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.96 E-value=1.3e-05 Score=72.16 Aligned_cols=121 Identities=12% Similarity=0.242 Sum_probs=81.5
Q ss_pred EEEEecCCCCCcHHHHHhhhcchhhccc--cccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCC
Q 022736 123 HILLETTGLANPAPLASVLWLDDQLESA--VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVS 200 (293)
Q Consensus 123 ~iiidt~G~~~~~~~~~~~~~~~~~~~~--~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~ 200 (293)
+.|+||.|-. ++++ .+++.. .++|..+++|-|....+.... +....+-.++.|.+++++|+|+.+
T Consensus 203 VsfVDtvGHE---pwLr-----TtirGL~gqk~dYglLvVaAddG~~~~tk-----EHLgi~~a~~lPviVvvTK~D~~~ 269 (527)
T COG5258 203 VSFVDTVGHE---PWLR-----TTIRGLLGQKVDYGLLVVAADDGVTKMTK-----EHLGIALAMELPVIVVVTKIDMVP 269 (527)
T ss_pred EEEEecCCcc---HHHH-----HHHHHHhccccceEEEEEEccCCcchhhh-----HhhhhhhhhcCCEEEEEEecccCc
Confidence 5789999953 2221 112111 468888999988776655443 244556667899999999999998
Q ss_pred CCCCcchHHHHHHHHHhhcCCCEEEEeecC----------CCCchhhcccccCCcchhhhhhhhhh
Q 022736 201 PERSGDSLDELEKEIHEINSLAHVIRSVRC----------QVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 201 ~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~----------~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
.+......+++.+.|+..+.-.-+++.... .-...++|.+|+.||+|.+-|..++.
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 876666677777788776644434432211 11245788899999999988877664
No 363
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.95 E-value=0.00027 Score=57.94 Aligned_cols=124 Identities=16% Similarity=0.159 Sum_probs=69.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
+.+..+..|+||||+.-.|... ..|+++.++..|++. .+++......... ...+.
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~-~~~~~~~~~~~~~-------------------~~~~~--- 58 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGL-RNLDLILGLENRV-------------------VYTLH--- 58 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCchhhccccccC-------------------Ccchh---
Confidence 4566789999999999998764 568999999999853 2222211100000 00011
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhc-cCE
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAF-ADV 190 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~-a~i 190 (293)
+.+. -|++||||||...... . ......|.++.++++.......-. ...+.+.+... ...
T Consensus 59 -~~~~----~d~viiD~p~~~~~~~-~---------~~l~~ad~viiv~~~~~~s~~~~~-----~~~~~~~~~~~~~~~ 118 (179)
T cd02036 59 -DVLA----GDYILIDSPAGIERGF-I---------TAIAPADEALLVTTPEISSLRDAD-----RVKGLLEALGIKVVG 118 (179)
T ss_pred -hccc----CCEEEEECCCCCcHHH-H---------HHHHhCCcEEEEeCCCcchHHHHH-----HHHHHHHHcCCceEE
Confidence 1111 1899999998554321 1 112456788999988643321110 01223333222 246
Q ss_pred EEEeCCCCCC
Q 022736 191 VILNKVDLVS 200 (293)
Q Consensus 191 ivlNK~D~~~ 200 (293)
+++|+.+.-.
T Consensus 119 iv~N~~~~~~ 128 (179)
T cd02036 119 VIVNRVRPDM 128 (179)
T ss_pred EEEeCCcccc
Confidence 8999998653
No 364
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=3.5e-05 Score=69.75 Aligned_cols=54 Identities=15% Similarity=0.315 Sum_probs=34.5
Q ss_pred cccccEEEEEcccch-HHHHhhhcccCCchHHHHHHh--ccCEEEEeCCCCCCCCCCcchHHHHHHHHH
Q 022736 151 VRLDSIITVVDAKNL-LFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIH 216 (293)
Q Consensus 151 ~~~d~vi~vvDa~~~-~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D~~~~~~~~~~~~~~~~~l~ 216 (293)
.++++.++.+-+... ..+++ .+.+..+. ...+-|+.|+|.+..+++ ..++..+.
T Consensus 128 ~RVH~cLYFI~P~ghgL~p~D--------i~~Mk~l~~~vNiIPVI~KaD~lT~~El----~~~K~~I~ 184 (366)
T KOG2655|consen 128 NRVHCCLYFISPTGHGLKPLD--------IEFMKKLSKKVNLIPVIAKADTLTKDEL----NQFKKRIR 184 (366)
T ss_pred CceEEEEEEeCCCCCCCcHhh--------HHHHHHHhccccccceeeccccCCHHHH----HHHHHHHH
Confidence 378889999987532 44443 23344443 357889999999988754 44444443
No 365
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=4.1e-05 Score=63.65 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=64.4
Q ss_pred EEEEecCCCcHHHHHHHHHccC--CCCeEEEEEcCCCC-ccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGK--HGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~--~~~~vavv~~d~g~-~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
+++.|-+|+|||-|+.++.+.. ...| +.|--+|++ +..+|.
T Consensus 17 iVliGDS~VGKsnLlsRftrnEF~~~Sk-sTIGvef~t~t~~vd~----------------------------------- 60 (222)
T KOG0087|consen 17 IVLIGDSAVGKSNLLSRFTRNEFSLESK-STIGVEFATRTVNVDG----------------------------------- 60 (222)
T ss_pred EEEeCCCccchhHHHHHhcccccCcccc-cceeEEEEeeceeecC-----------------------------------
Confidence 7889999999999999999852 1112 222223332 011222
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh-c---
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA-F--- 187 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~-~--- 187 (293)
......|+||+|...-..+.... . ...-+.++|.|.+...+.. + ...|+.++. +
T Consensus 61 -------k~vkaqIWDTAGQERyrAitSaY-----Y---rgAvGAllVYDITr~~Tfe-n------v~rWL~ELRdhad~ 118 (222)
T KOG0087|consen 61 -------KTVKAQIWDTAGQERYRAITSAY-----Y---RGAVGALLVYDITRRQTFE-N------VERWLKELRDHADS 118 (222)
T ss_pred -------cEEEEeeecccchhhhccccchh-----h---cccceeEEEEechhHHHHH-H------HHHHHHHHHhcCCC
Confidence 12345799999976544333221 1 2344678899997665543 2 244555543 2
Q ss_pred --cCEEEEeCCCCCC
Q 022736 188 --ADVVILNKVDLVS 200 (293)
Q Consensus 188 --a~iivlNK~D~~~ 200 (293)
+.++|-||+||..
T Consensus 119 nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 119 NIVIMLVGNKSDLNH 133 (222)
T ss_pred CeEEEEeecchhhhh
Confidence 3477779999876
No 366
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.93 E-value=1.5e-05 Score=65.35 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=33.8
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
.+.|+++|+|++|||||||+++|+.. ..+.+++++.++..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 46889999999999999999999875 44778999987543
No 367
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.93 E-value=1.1e-05 Score=70.16 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++|.+|+|||||+|+|+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 47899999999999999999953
No 368
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.92 E-value=2.1e-05 Score=64.57 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=26.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE 70 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~ 70 (293)
.+.++++|.+|+|||||+|+|.+ .+...+...+|+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~----~~~~~~~~~~~~ 149 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRG----KKVAKVGNKPGV 149 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC----CCceeecCCCCE
Confidence 35688999999999999999994 343444555554
No 369
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.91 E-value=0.00014 Score=58.09 Aligned_cols=154 Identities=20% Similarity=0.207 Sum_probs=87.8
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
.+++|.+-+|||+|++.+.+ .|.+-++ ||. +++|.. ..++++..
T Consensus 11 livigdstvgkssll~~ft~----gkfaels-dpt--vgvdff-----------arlie~~p------------------ 54 (213)
T KOG0091|consen 11 LIVIGDSTVGKSSLLRYFTE----GKFAELS-DPT--VGVDFF-----------ARLIELRP------------------ 54 (213)
T ss_pred EEEEcCCcccHHHHHHHHhc----CcccccC-CCc--cchHHH-----------HHHHhcCC------------------
Confidence 46789999999999999995 2333333 443 344421 01112211
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC----E
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD----V 190 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~----i 190 (293)
..+.+.-++||+|......+..... ...-++++|.|.++......- .. ...++...++.|+ .
T Consensus 55 ---g~riklqlwdtagqerfrsitksyy--------rnsvgvllvyditnr~sfehv-~~--w~~ea~m~~q~P~k~VFl 120 (213)
T KOG0091|consen 55 ---GYRIKLQLWDTAGQERFRSITKSYY--------RNSVGVLLVYDITNRESFEHV-EN--WVKEAAMATQGPDKVVFL 120 (213)
T ss_pred ---CcEEEEEEeeccchHHHHHHHHHHh--------hcccceEEEEeccchhhHHHH-HH--HHHHHHHhcCCCCeeEEE
Confidence 2345678999999887777765442 223367889999875432110 00 0122222334454 4
Q ss_pred EEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 191 VILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 191 ivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+|-.|+|+.+..++ ..++.++.-+.. . -..+.+|+++|.|+++--+.+
T Consensus 121 LVGhKsDL~SqRqV--t~EEaEklAa~h-g--------------M~FVETSak~g~NVeEAF~ml 168 (213)
T KOG0091|consen 121 LVGHKSDLQSQRQV--TAEEAEKLAASH-G--------------MAFVETSAKNGCNVEEAFDML 168 (213)
T ss_pred Eeccccchhhhccc--cHHHHHHHHHhc-C--------------ceEEEecccCCCcHHHHHHHH
Confidence 55599999976543 344444333322 1 134678999999987655444
No 370
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=97.90 E-value=9.8e-05 Score=66.74 Aligned_cols=148 Identities=20% Similarity=0.255 Sum_probs=84.6
Q ss_pred CceeEEEE--EecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCC-CCcchhhhhhccC--cceeec
Q 022736 30 VSVGVTVI--TGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELAN--GCICCT 102 (293)
Q Consensus 30 ~~~pvi~i--~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~-~~~~~~~~~~l~~--gcicc~ 102 (293)
..+|||.| .+.-|+|||+++..|++. .+|.+++|++...|....-....+..+. .....+|-..+.. +|.++.
T Consensus 47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V 126 (325)
T PRK00652 47 APVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGGKLEKGPLLVDPDHTAAEVGDEPLLIARRTGAPVAV 126 (325)
T ss_pred CCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCCCcCCCCEEeCCCCChhhhCcHHHHhccCCCceEEE
Confidence 46888988 667799999999999885 5689999999988752201111122111 1112245445544 566555
Q ss_pred cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (293)
Q Consensus 103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (293)
.++... +...+.. ..+.|+||.|= |+-+. . ..=|.=|.++|+...... ....+...+.+-.
T Consensus 127 ~~dR~~-~~~~~~~-~~~~dviilDD-GfQh~-----------~----l~rdl~Ivl~d~~~~fgn-g~~LPaG~LREp~ 187 (325)
T PRK00652 127 SPDRVA-AARALLA-AHGADIIILDD-GLQHY-----------R----LARDIEIVVVDGQRGFGN-GFLLPAGPLREPP 187 (325)
T ss_pred cCcHHH-HHHHHHh-cCCCCEEEEcC-CccCc-----------c----cCCCeEEEEECCCCCCCC-CccCCCcCccCCh
Confidence 444443 3333332 23689999873 22111 1 112344777998654321 1111112233445
Q ss_pred HHHhccCEEEEeCC
Q 022736 183 HQIAFADVVILNKV 196 (293)
Q Consensus 183 ~qi~~a~iivlNK~ 196 (293)
.++..||++++|++
T Consensus 188 ~~l~rAd~vv~~~~ 201 (325)
T PRK00652 188 SRLKSVDAVIVNGG 201 (325)
T ss_pred hHhccCCEEEEeCC
Confidence 68889999999994
No 371
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.87 E-value=5.1e-05 Score=61.46 Aligned_cols=128 Identities=18% Similarity=0.316 Sum_probs=67.1
Q ss_pred EEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL 114 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~l 114 (293)
++|+|--++||||+|++.+. +|...+.-.++++|. +.. .+++ +.+..
T Consensus 23 ~vivGng~VGKssmiqryCk-------gifTkdykktIgvdf--ler---------qi~v------------~~Edv--- 69 (246)
T KOG4252|consen 23 FVIVGNGSVGKSSMIQRYCK-------GIFTKDYKKTIGVDF--LER---------QIKV------------LIEDV--- 69 (246)
T ss_pred EEEECCCccchHHHHHHHhc-------cccccccccccchhh--hhH---------HHHh------------hHHHH---
Confidence 56689999999999999995 233444433344332 111 0000 01111
Q ss_pred HhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH-----hccC
Q 022736 115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI-----AFAD 189 (293)
Q Consensus 115 ~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi-----~~a~ 189 (293)
...++||.|..+...+..+.. +. +...++|+..+...... . ..++...+ +.|.
T Consensus 70 -------r~mlWdtagqeEfDaItkAyy-----rg---aqa~vLVFSTTDr~SFe-a------~~~w~~kv~~e~~~IPt 127 (246)
T KOG4252|consen 70 -------RSMLWDTAGQEEFDAITKAYY-----RG---AQASVLVFSTTDRYSFE-A------TLEWYNKVQKETERIPT 127 (246)
T ss_pred -------HHHHHHhccchhHHHHHHHHh-----cc---ccceEEEEecccHHHHH-H------HHHHHHHHHHHhccCCe
Confidence 124789999887766654332 11 22234444333221110 0 12222222 4589
Q ss_pred EEEEeCCCCCCCCCCcchHHHHHHHHHhhc
Q 022736 190 VVILNKVDLVSPERSGDSLDELEKEIHEIN 219 (293)
Q Consensus 190 iivlNK~D~~~~~~~~~~~~~~~~~l~~ln 219 (293)
++|-||+|++++... ....++.+.+.++
T Consensus 128 V~vqNKIDlveds~~--~~~evE~lak~l~ 155 (246)
T KOG4252|consen 128 VFVQNKIDLVEDSQM--DKGEVEGLAKKLH 155 (246)
T ss_pred EEeeccchhhHhhhc--chHHHHHHHHHhh
Confidence 999999999976542 3344444555444
No 372
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00013 Score=68.90 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=47.4
Q ss_pred ccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc-CEEEEeCCCCCCCCCCcchHHHHHHHH-----HhhcCCCEEE
Q 022736 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-DVVILNKVDLVSPERSGDSLDELEKEI-----HEINSLAHVI 225 (293)
Q Consensus 152 ~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-~iivlNK~D~~~~~~~~~~~~~~~~~l-----~~lnp~a~i~ 225 (293)
-+|.|++++|+.-+..- .. .++..++..-+.| .+-|++..|+.... ..+...++.| ..+.+.|+++
T Consensus 133 IaDLVlLlIdgnfGfEM-ET----mEFLnil~~HGmPrvlgV~ThlDlfk~~---stLr~~KKrlkhRfWtEiyqGaKlF 204 (1077)
T COG5192 133 IADLVLLLIDGNFGFEM-ET----MEFLNILISHGMPRVLGVVTHLDLFKNP---STLRSIKKRLKHRFWTEIYQGAKLF 204 (1077)
T ss_pred hhheeEEEeccccCcee-hH----HHHHHHHhhcCCCceEEEEeecccccCh---HHHHHHHHHHhhhHHHHHcCCceEE
Confidence 45789999999644321 11 0122233333444 56788999987654 2344444444 3577888876
Q ss_pred E---eecCCCCchhhccccc
Q 022736 226 R---SVRCQVDLSEVLNCRA 242 (293)
Q Consensus 226 ~---~~~~~~~~~~i~~~sa 242 (293)
. ...++.+-.+++.+|.
T Consensus 205 ylsgV~nGRYpDreilnLsR 224 (1077)
T COG5192 205 YLSGVENGRYPDREILNLSR 224 (1077)
T ss_pred EecccccCCCCCHHHHHHHH
Confidence 4 2355555566666654
No 373
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.85 E-value=1.6e-05 Score=69.12 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=39.2
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+.++++|++++|+++..+.+-.+. ++.|.|+.|||||||++.|.+
T Consensus 1 ~~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CeeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 468899999999998888865443 599999999999999999986
No 374
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.84 E-value=0.00018 Score=65.72 Aligned_cols=43 Identities=35% Similarity=0.648 Sum_probs=38.0
Q ss_pred CCCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 28 DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 28 ~~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+....++++|+|+-+||||||.+.|++. ..|.+++++..|+|.
T Consensus 69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ 113 (398)
T COG1341 69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQ 113 (398)
T ss_pred hccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCC
Confidence 3557899999999999999999999986 458899999999986
No 375
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=5e-05 Score=72.77 Aligned_cols=158 Identities=23% Similarity=0.277 Sum_probs=82.3
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHH
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ 109 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~ 109 (293)
.++..++++|++++|||+|+.-|....+ .++.. ..++.+-.. + .-..|...||-.-+..--++
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tH--------p~~~~--~~e~~lryt--D----~l~~E~eRg~sIK~~p~Tl~- 188 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTH--------PDFSK--NTEADLRYT--D----TLFYEQERGCSIKSTPVTLV- 188 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceecc--------ccccc--ccccccccc--c----cchhhHhcCceEeecceEEE-
Confidence 3677799999999999999999986421 22211 111100000 0 01122223333221110000
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccC
Q 022736 110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFAD 189 (293)
Q Consensus 110 ~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~ 189 (293)
+.+ .+...+=+-|+||||-.+...- ......-.|++++++|+.......... .....-|-..|.
T Consensus 189 -l~D--~~~KS~l~nilDTPGHVnF~DE--------~ta~l~~sDgvVlvvDv~EGVmlntEr-----~ikhaiq~~~~i 252 (971)
T KOG0468|consen 189 -LSD--SKGKSYLMNILDTPGHVNFSDE--------TTASLRLSDGVVLVVDVAEGVMLNTER-----IIKHAIQNRLPI 252 (971)
T ss_pred -Eec--CcCceeeeeeecCCCcccchHH--------HHHHhhhcceEEEEEEcccCceeeHHH-----HHHHHHhccCcE
Confidence 000 0012233568999997765322 233446789999999997554321110 222334456789
Q ss_pred EEEEeCCCCCCCCCC---cchHHHHHHHHHhhcC
Q 022736 190 VVILNKVDLVSPERS---GDSLDELEKEIHEINS 220 (293)
Q Consensus 190 iivlNK~D~~~~~~~---~~~~~~~~~~l~~lnp 220 (293)
++|+||+|++--+-. ....-+++..+..+|.
T Consensus 253 ~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~ 286 (971)
T KOG0468|consen 253 VVVINKVDRLILELKLPPMDAYYKLRHIIDEINN 286 (971)
T ss_pred EEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcc
Confidence 999999995421100 1345566666777774
No 376
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.84 E-value=1.9e-05 Score=66.19 Aligned_cols=44 Identities=30% Similarity=0.466 Sum_probs=38.4
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++.|+.++|+..+.+.....- +++|+|++|||||||++.|-.
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 58899999999999998876544 599999999999999999964
No 377
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.82 E-value=0.00023 Score=59.12 Aligned_cols=148 Identities=19% Similarity=0.232 Sum_probs=76.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchh-----hhhcCCCCcchhhhhhccCcceee----c
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERA-----MINEGEGGALVEEWVELANGCICC----T 102 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~-----~~~~~~~~~~~~~~~~l~~gcicc----~ 102 (293)
|.+..+..|+||||+.-.|... ..|+++.++..|+.. ...... .+..+..... .....+..+-++- .
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQA-PNLSILFGVYDILREGLENAN-AILKNFESQDIYQGEEYL 78 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS-HHHHHHTTCHHHHTTSSHGHH-CHHESCCHHHHHHHCHCH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCccc-ccHHHHhcchhhccccceehh-hhhhccchhhhhhhhhhh
Confidence 4678899999999999988763 469999999999865 111110 0010000000 0000000000000 0
Q ss_pred cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (293)
Q Consensus 103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (293)
....+.+.+..+.. ..+|+||||||+..... .. ......|.+|.++++.... .... ..+...+
T Consensus 79 ~~~~l~~~l~~l~~--~~yD~iiiD~~~~~~~~-~~---------~~l~~ad~viv~~~~~~~~--i~~~---~~~~~~l 141 (195)
T PF01656_consen 79 DPELLREILESLIK--SDYDYIIIDTPPGLSDP-VR---------NALAAADYVIVPIEPDPSS--IEGA---ERLIELL 141 (195)
T ss_dssp HHHHHHHHHHHHHH--TTSSEEEEEECSSSSHH-HH---------HHHHTSSEEEEEEESSHHH--HHHH---HHHHHHH
T ss_pred HHHHHHHHHHHhhh--ccccceeecccccccHH-HH---------HHHHhCceeeeecCCcHHH--HHHH---HHHHHHH
Confidence 01123333333332 23999999999855433 11 1224577889999887543 1111 0123334
Q ss_pred HHHhc---cCEEEEeCCCCCC
Q 022736 183 HQIAF---ADVVILNKVDLVS 200 (293)
Q Consensus 183 ~qi~~---a~iivlNK~D~~~ 200 (293)
+.... ...+|+||++.-+
T Consensus 142 ~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 142 KRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp HHHTHTEEEEEEEEEEETSCC
T ss_pred HHhccccceEEEEEeeeCCCc
Confidence 44432 3488999998654
No 378
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.81 E-value=2.5e-05 Score=61.97 Aligned_cols=37 Identities=35% Similarity=0.600 Sum_probs=27.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEE-EcCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI-LNEFG 69 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv-~~d~g 69 (293)
|++.|+|+.|||||||+..|++. ..|.+++++ ..+.|
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g 40 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHG 40 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCC
Confidence 79999999999999999999885 468888844 44553
No 379
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=2.6e-05 Score=67.48 Aligned_cols=46 Identities=33% Similarity=0.481 Sum_probs=39.1
Q ss_pred CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.+.++++|+++.|.+.+.+.+.... ++.|+|+.|||||||++.++.
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3579999999999976677765443 689999999999999999996
No 380
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.79 E-value=3.3e-05 Score=68.02 Aligned_cols=40 Identities=30% Similarity=0.275 Sum_probs=31.7
Q ss_pred ceeEEEEEecCCCcHHHHHHHHHcc-CCCCeEEEEEcCCCC
Q 022736 31 SVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE 70 (293)
Q Consensus 31 ~~pvi~i~G~~gaGKTTlin~ll~~-~~~~~vavv~~d~g~ 70 (293)
.-+-+.|+|.||+|||||+|++.+. ....+.+.+-+++|.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGV 182 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGV 182 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCc
Confidence 4456888999999999999999774 223478888888885
No 381
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.77 E-value=6.8e-05 Score=69.18 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=34.8
Q ss_pred CceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 30 ~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
.+.|++.|+|++|||||||+.+|++. ..|.+++++.++-.
T Consensus 203 ~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 203 GAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred CCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 36889999999999999999999985 45889999997654
No 382
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.75 E-value=3e-05 Score=62.66 Aligned_cols=88 Identities=18% Similarity=0.126 Sum_probs=54.1
Q ss_pred ccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHh--ccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEE
Q 022736 148 ESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIA--FADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVI 225 (293)
Q Consensus 148 ~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~--~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~ 225 (293)
.....+|.+++|+|+.......+. .....+.... .+.++|+||+|+.+++ .+...+..+....
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~-----~i~~~l~~~~~~~p~ilVlNKiDl~~~~-------~~~~~~~~~~~~~--- 68 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCK-----HVEEYLKKEKPHKHLIFVLNKCDLVPTW-------VTARWVKILSKEY--- 68 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCH-----HHHHHHHhccCCCCEEEEEEchhcCCHH-------HHHHHHHHHhcCC---
Confidence 345678999999999864322111 0222232222 5789999999998543 2333343332211
Q ss_pred EeecCCCCchhhcccccCCcchhhhhhhhhhhh
Q 022736 226 RSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 226 ~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
++. ++++|+..+.|.++|.+++.+.
T Consensus 69 -------~~~-~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 69 -------PTI-AFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred -------cEE-EEEeeccccccHHHHHHHHHHH
Confidence 112 4788999999999888888654
No 383
>PRK04296 thymidine kinase; Provisional
Probab=97.70 E-value=0.00051 Score=57.39 Aligned_cols=91 Identities=18% Similarity=0.316 Sum_probs=51.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
+++++|++|+||||++-.++.. ..+.++.++...+.++.+ ....... .+.. + .++......++...+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~--lg~~------~--~~~~~~~~~~~~~~~ 72 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSR--IGLS------R--EAIPVSSDTDIFELI 72 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecC--CCCc------c--cceEeCChHHHHHHH
Confidence 6889999999999999888764 457888887543332111 1111111 1110 1 112223333444444
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHH
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLA 138 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~ 138 (293)
.. ..+++++|+||-.++.+...+.
T Consensus 73 ~~---~~~~~dvviIDEaq~l~~~~v~ 96 (190)
T PRK04296 73 EE---EGEKIDCVLIDEAQFLDKEQVV 96 (190)
T ss_pred Hh---hCCCCCEEEEEccccCCHHHHH
Confidence 43 2457899999999876544343
No 384
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.70 E-value=6.1e-05 Score=64.14 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=39.0
Q ss_pred CCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
++.+-.++++++++++++++.+....+- +++|+|++|||||||++.|..
T Consensus 6 ~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 3444468999999999877666654333 589999999999999999985
No 385
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.68 E-value=0.0006 Score=60.01 Aligned_cols=37 Identities=30% Similarity=0.285 Sum_probs=30.8
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+|+|+|.-|+||||+.-.|... ..|+|+.++-.|++.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~ 40 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH 40 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4677899999999988887653 569999999999864
No 386
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.68 E-value=0.00074 Score=53.41 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=65.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
+.+..|..|+||||+.-.+... ..|.++.++..|++. ..
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~-~~-------------------------------------- 42 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL-AN-------------------------------------- 42 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC-CC--------------------------------------
Confidence 3457889999999998888663 568888888888653 00
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccC
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFAD 189 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~ 189 (293)
-.+|++|||+|+....... .....+|.++.+++++...-..... ....+.+. ....
T Consensus 43 -------~~yd~VIiD~p~~~~~~~~----------~~l~~aD~vviv~~~~~~s~~~~~~-----~l~~l~~~~~~~~~ 100 (139)
T cd02038 43 -------LDYDYIIIDTGAGISDNVL----------DFFLAADEVIVVTTPEPTSITDAYA-----LIKKLAKQLRVLNF 100 (139)
T ss_pred -------CCCCEEEEECCCCCCHHHH----------HHHHhCCeEEEEcCCChhHHHHHHH-----HHHHHHHhcCCCCE
Confidence 1178999999985543221 1224568899999987543211000 11122211 1234
Q ss_pred EEEEeCCCCC
Q 022736 190 VVILNKVDLV 199 (293)
Q Consensus 190 iivlNK~D~~ 199 (293)
.+|+|+++..
T Consensus 101 ~lVvN~~~~~ 110 (139)
T cd02038 101 RVVVNRAESP 110 (139)
T ss_pred EEEEeCCCCH
Confidence 6999998743
No 387
>CHL00175 minD septum-site determining protein; Validated
Probab=97.67 E-value=0.0013 Score=58.38 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=29.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
-+.++.|..|+||||+.-.|... ..|+++.++..|++
T Consensus 17 vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~ 55 (281)
T CHL00175 17 IIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG 55 (281)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34445669999999999887653 46899999999985
No 388
>PRK00098 GTPase RsgA; Reviewed
Probab=97.67 E-value=6.3e-05 Score=67.44 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++|++|+|||||+|.|+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999953
No 389
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0002 Score=55.67 Aligned_cols=149 Identities=19% Similarity=0.187 Sum_probs=81.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHccCCC-CeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHH
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA 110 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~~~~-~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~ 110 (293)
+.-++|+|..|+|||-|+..+.+...- .-...+--+||+ + .+++.
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgt------r-------------iievs--------------- 56 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT------R-------------IIEVS--------------- 56 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecce------e-------------EEEec---------------
Confidence 455788999999999999999853100 000112224443 1 11111
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhcc--
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFA-- 188 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a-- 188 (293)
....+.-|+||.|......+.+... ....+.+.|.|......+... + .+..-.+.+..|
T Consensus 57 -------gqkiklqiwdtagqerfravtrsyy--------rgaagalmvyditrrstynhl-s---swl~dar~ltnpnt 117 (215)
T KOG0097|consen 57 -------GQKIKLQIWDTAGQERFRAVTRSYY--------RGAAGALMVYDITRRSTYNHL-S---SWLTDARNLTNPNT 117 (215)
T ss_pred -------CcEEEEEEeecccHHHHHHHHHHHh--------ccccceeEEEEehhhhhhhhH-H---HHHhhhhccCCCce
Confidence 1234567999999876666655432 234466888888765544221 0 111112334444
Q ss_pred -CEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhh
Q 022736 189 -DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR 250 (293)
Q Consensus 189 -~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~ 250 (293)
.+++-||.|+-++..+ ..++.+.... -|. --++..|+++|+++++
T Consensus 118 ~i~lignkadle~qrdv--~yeeak~fae-eng--------------l~fle~saktg~nved 163 (215)
T KOG0097|consen 118 VIFLIGNKADLESQRDV--TYEEAKEFAE-ENG--------------LMFLEASAKTGQNVED 163 (215)
T ss_pred EEEEecchhhhhhcccC--cHHHHHHHHh-hcC--------------eEEEEecccccCcHHH
Confidence 4556699998765432 3333332221 121 1245789999999863
No 390
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.65 E-value=5.2e-05 Score=64.23 Aligned_cols=46 Identities=22% Similarity=0.205 Sum_probs=38.1
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
|++++++++++|+++..+....+- +++|+|+.|||||||++.|...
T Consensus 1 m~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 1 MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999876666655443 5899999999999999999953
No 391
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.65 E-value=8e-05 Score=61.34 Aligned_cols=45 Identities=31% Similarity=0.496 Sum_probs=35.8
Q ss_pred eEEEccccccccCcc-cCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSH-ENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++.|++.+ .+.+..+ -++.++|++|||||||++-|...
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 378899999998875 4444332 35889999999999999999875
No 392
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.64 E-value=6.6e-05 Score=60.47 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHc
Q 022736 33 GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~ 54 (293)
..++++|.+|+||||++|+|..
T Consensus 102 ~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 102 GKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3458999999999999999993
No 393
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.64 E-value=0.00016 Score=61.98 Aligned_cols=93 Identities=23% Similarity=0.199 Sum_probs=57.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.-++++|||.+|||||+..+... +-...+.+|.+-..+.+ +++
T Consensus 63 aRValIGfPSVGKStlLs~iT~T----~SeaA~yeFTTLtcIpG--------------vi~------------------- 105 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITST----HSEAASYEFTTLTCIPG--------------VIH------------------- 105 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcc----hhhhhceeeeEEEeecc--------------eEE-------------------
Confidence 34889999999999999999842 22222333332000000 011
Q ss_pred HHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH
Q 022736 113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ 168 (293)
Q Consensus 113 ~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~ 168 (293)
.++..+-++|.||+.+.+....... .........+|.|+.|+||+....+
T Consensus 106 -----y~ga~IQllDLPGIieGAsqgkGRG-RQviavArtaDlilMvLDatk~e~q 155 (364)
T KOG1486|consen 106 -----YNGANIQLLDLPGIIEGASQGKGRG-RQVIAVARTADLILMVLDATKSEDQ 155 (364)
T ss_pred -----ecCceEEEecCcccccccccCCCCC-ceEEEEeecccEEEEEecCCcchhH
Confidence 2345577999999887665553322 2233445678999999999876543
No 394
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.63 E-value=4.5e-05 Score=67.85 Aligned_cols=103 Identities=21% Similarity=0.137 Sum_probs=57.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE 112 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~ 112 (293)
.-++|+|.||+|||||+|.|.+. +.+ ..|-|=+|+......+. |.| .| + +.|.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~----~a~-~~NfPF~TIdPn~a~V~-----------------v~d--~R--f-d~l~ 73 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKS----KAG-AANFPFCTIDPNEARVE-----------------VPD--SR--F-DLLC 73 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcC----CCC-ccCCCcceeccccceee-----------------cCc--hH--H-HHHH
Confidence 37899999999999999999964 222 22222211222211111 111 11 1 2222
Q ss_pred HHHhhc--CCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEccc
Q 022736 113 QLVQRK--ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 163 (293)
Q Consensus 113 ~l~~~~--~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~ 163 (293)
.+.... -+..+-+.|.+|+...+...+.+. ...+.+...+|.++.||++.
T Consensus 74 ~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLG-N~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 74 PIYGPKSKVPAFLTVYDIAGLVKGASAGEGLG-NKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred HhcCCcceeeeeEEEEeecccccCcccCcCch-HHHHHhhhhccceeEEEEec
Confidence 222111 123467899999876554443332 44567778899999999875
No 395
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.63 E-value=0.00023 Score=59.84 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
=++++|.+|+|||+|..+++..
T Consensus 5 kvvvlG~~gVGKSal~~qf~~~ 26 (196)
T KOG0395|consen 5 KVVVLGAGGVGKSALTIQFLTG 26 (196)
T ss_pred EEEEECCCCCCcchheeeeccc
Confidence 3677999999999999999853
No 396
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=5.6e-05 Score=65.43 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=37.8
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
|.+++++++++|+++..+....+- +++|+|++|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 1 MSIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999876666654333 6999999999999999999853
No 397
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.62 E-value=0.00017 Score=70.58 Aligned_cols=40 Identities=28% Similarity=0.491 Sum_probs=34.8
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCC
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF 68 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~ 68 (293)
.+++|++.|+|+.|||||||+.+|+.. ..|.++++|.++-
T Consensus 7 ~~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 7 PLSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 456899999999999999999999986 4588999999843
No 398
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00018 Score=61.61 Aligned_cols=64 Identities=20% Similarity=0.258 Sum_probs=51.4
Q ss_pred CCCceEEEccccccccCcccCCCCceeE-----EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 7 DPPLAVRIDETTHEFSNSHENDDVSVGV-----TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv-----i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
.++++++++++...+..++.+..-...| .+|+|+.|||||||++-+... +....+.++-.-+|.
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~ 97 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGK 97 (257)
T ss_pred CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccC
Confidence 3446899999999999999999887776 899999999999999999875 223455555556665
No 399
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.61 E-value=0.0002 Score=61.49 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=30.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE 67 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d 67 (293)
++++.|+|+.||||||++.+|+.. ..|.+++++.+.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 368999999999999999999875 458899999753
No 400
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.61 E-value=0.0012 Score=55.55 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=30.2
Q ss_pred eeEEEEE-ecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 32 VGVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 32 ~pvi~i~-G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
..+|.|+ +..|+||||+...|... ..|+++.+|..|+..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4555555 67799999999988764 568999999888754
No 401
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.61 E-value=0.0013 Score=56.94 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=29.3
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
+.++.+.-|+||||+.-.|... ..|+++.++-.|++
T Consensus 3 i~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4566788999999999887653 45889999999984
No 402
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.60 E-value=8.5e-05 Score=66.24 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++|++|+|||||+|.|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 57999999999999999999953
No 403
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.60 E-value=0.00086 Score=57.25 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=31.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+++++|.+|+||||+...+... ..|+++.++..|+..
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 4688999999999999988763 568999999998875
No 404
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.59 E-value=6.7e-05 Score=63.76 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=37.4
Q ss_pred ceEEEccccccc-cCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
|.++++|+.+.| +....+.+.++- +++|+|++|||||||++.|-+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 689999999999 666666665444 499999999999999999974
No 405
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=7.4e-05 Score=65.20 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=37.8
Q ss_pred CCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++| ++++++++.|+++..+....+- +++|+|++|||||||++.|..
T Consensus 2 ~~~~-l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 2 AKKI-ITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred Ccce-EEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444 7899999999876666654433 699999999999999999984
No 406
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=7e-05 Score=64.94 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=37.8
Q ss_pred ceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
|.+++++++++|++++.+..... -+++|+|+.|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999987766665433 36999999999999999999853
No 407
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=9.9e-05 Score=65.07 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=39.4
Q ss_pred CCCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.++++-++++++++++|++...+....+- +++|+|++|||||||++.|..
T Consensus 15 ~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 15 PEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444568999999999876666654333 689999999999999999984
No 408
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.58 E-value=0.0011 Score=49.94 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=51.9
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CC-CCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL 111 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~--~~-~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l 111 (293)
.++.+..|+||||+...|... .. |+++.++..|+..
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~----------------------------------------- 41 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF----------------------------------------- 41 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC-----------------------------------------
Confidence 456788999999999888764 34 8899998877763
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchH
Q 022736 112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLL 166 (293)
Q Consensus 112 ~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~ 166 (293)
.-|++|||||+........ .....|.++.+++++...
T Consensus 42 --------~~D~IIiDtpp~~~~~~~~----------~l~~aD~vlvvv~~~~~s 78 (106)
T cd03111 42 --------GDDYVVVDLGRSLDEVSLA----------ALDQADRVFLVTQQDLPS 78 (106)
T ss_pred --------CCCEEEEeCCCCcCHHHHH----------HHHHcCeEEEEecCChHH
Confidence 0179999999966532111 124567889999887543
No 409
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.58 E-value=0.0012 Score=56.15 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=30.6
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+|.|+|..|+||||+.-.|... ..|+++.++-.|++.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~ 40 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5778899999999988777653 458999999999874
No 410
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.57 E-value=9.3e-05 Score=60.02 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=32.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 32 ~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
++++.|+|++|||||||+++|+.. ..|.+++++.++..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 368999999999999999999985 45788999987654
No 411
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.56 E-value=0.00012 Score=77.03 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.7
Q ss_pred CCceeEEEEEecCCCcHHHHHHHH
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYI 52 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~l 52 (293)
-...|-++|+|++||||||+++.-
T Consensus 108 lY~LPWYlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 108 LYDLPWYLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred hhcCCCEEEECCCCCchhHHHHhC
Confidence 346899999999999999999987
No 412
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=8.4e-05 Score=65.18 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=43.2
Q ss_pred CCCCCCCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
||.-+-.+|| +.+++++++|+.++.+....+- +++|+|++|||||||++.|...
T Consensus 1 ~~~~~~~~~~-i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 1 MEAGKSAEDV-FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred CCCchhhhhh-eeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4555555666 8999999999988877755433 6999999999999999999853
No 413
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.53 E-value=9.7e-05 Score=66.38 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=38.8
Q ss_pred CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+.+++++++++|++...+....+- +++|+|+.|||||||++.|...
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999877666654333 6999999999999999999863
No 414
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.52 E-value=9.3e-05 Score=65.33 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=38.6
Q ss_pred CCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++.+++++++++.|+++..+....+- +++|+|+.|||||||++.|...
T Consensus 3 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CccceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344468999999999876666544333 6999999999999999999853
No 415
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=97.52 E-value=0.0019 Score=56.88 Aligned_cols=36 Identities=31% Similarity=0.257 Sum_probs=29.3
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
|.+.|--|+||||+.-.|... ..|+|+.++-.|++.
T Consensus 3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 566699999999987776542 469999999999874
No 416
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=97.52 E-value=0.0019 Score=57.69 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=31.1
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
+++.|--|+||||+.-.|... ..|+|+.+|-.|++.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 788999999999998887653 569999999999885
No 417
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.00012 Score=63.82 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=37.0
Q ss_pred CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
|=.+++.+++++|++++.+....+- +++|+|+.|||||||++.|..
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3348899999999876666654333 699999999999999999984
No 418
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.50 E-value=0.00015 Score=61.50 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d 67 (293)
+.+..+|+|+|++|||||||.+.|.+...+..+.++..|
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 346789999999999999999999876545567777655
No 419
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00012 Score=64.12 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=37.2
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
-.+++++++++|+++..+....+- +++|+|+.|||||||++.|...
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 348899999999876666654333 6999999999999999999863
No 420
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00032 Score=64.50 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=55.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLV 199 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~ 199 (293)
+.-+-|+||||-.+.+ ++.++...-+|..|.|+|+..+....... ..+..+.-..|.+-.+||.|..
T Consensus 80 ~~~iNLLDTPGHeDFS--------EDTYRtLtAvDsAvMVIDaAKGiE~qT~K-----LfeVcrlR~iPI~TFiNKlDR~ 146 (528)
T COG4108 80 DCLVNLLDTPGHEDFS--------EDTYRTLTAVDSAVMVIDAAKGIEPQTLK-----LFEVCRLRDIPIFTFINKLDRE 146 (528)
T ss_pred CeEEeccCCCCccccc--------hhHHHHHHhhheeeEEEecccCccHHHHH-----HHHHHhhcCCceEEEeeccccc
Confidence 4456799999977653 23344556789999999998776544321 3445566678999999999987
Q ss_pred CCCCCcchHHHHHHHHH
Q 022736 200 SPERSGDSLDELEKEIH 216 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~l~ 216 (293)
..+-. +.++++++.|.
T Consensus 147 ~rdP~-ELLdEiE~~L~ 162 (528)
T COG4108 147 GRDPL-ELLDEIEEELG 162 (528)
T ss_pred cCChH-HHHHHHHHHhC
Confidence 65432 34555555553
No 421
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.49 E-value=0.00012 Score=62.29 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=33.8
Q ss_pred EEEccccccccCcccCCCCceeEEEEEecCCCcHHHHHHHHH
Q 022736 12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL 53 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~pvi~i~G~~gaGKTTlin~ll 53 (293)
+++.|+. +|.....+......+++|+|+.||||||+++.+.
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred EEEECcc-cCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 5566665 7777777766666899999999999999999987
No 422
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.48 E-value=0.00015 Score=62.26 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=37.5
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
..+++++++++|+.+..+....+- +++|+|+.|||||||++.|..
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 368899999999876666655443 599999999999999999985
No 423
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00011 Score=63.97 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=37.1
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
|.+++.++++.|+.+..+.....- +++|+|++|||||||++.|..
T Consensus 1 ~~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 1 MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 568899999999876666654333 699999999999999999985
No 424
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00011 Score=64.21 Aligned_cols=45 Identities=27% Similarity=0.452 Sum_probs=37.1
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
|.+++.+++++|+++..+.....- +++|+|+.|||||||++.|..
T Consensus 1 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (255)
T PRK11231 1 MTLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFAR 50 (255)
T ss_pred CEEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 568899999999876666654333 699999999999999999985
No 425
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.46 E-value=0.0001 Score=56.50 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+|+|+|++||||||+.+.|.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 426
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00015 Score=64.08 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=39.3
Q ss_pred CCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++..+++++++++|+.+..+....+- +++|+|++|||||||++.|..
T Consensus 9 ~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred CCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 345679999999999877666655443 589999999999999999984
No 427
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00016 Score=63.34 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=36.4
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.++++++++.|++++.+.....- +++|+|++|||||||++.|..
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 68899999999876666554333 599999999999999999985
No 428
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=97.45 E-value=0.00073 Score=60.78 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=82.1
Q ss_pred CceeEEEEEe--cCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCC-CcchhhhhhccC--cceeec
Q 022736 30 VSVGVTVITG--FLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEG-GALVEEWVELAN--GCICCT 102 (293)
Q Consensus 30 ~~~pvi~i~G--~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~-~~~~~~~~~l~~--gcicc~ 102 (293)
..+|||.|.. .-|+|||.++..|.+. .+|.+++|++...|....-....+..+.+ ....+|-..+.. +|..+.
T Consensus 26 ~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V 105 (311)
T TIGR00682 26 APVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVA 105 (311)
T ss_pred CCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEE
Confidence 4678877422 5699999999999885 67899999998887522111112222111 011234444433 443333
Q ss_pred cchhHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHH
Q 022736 103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAI 182 (293)
Q Consensus 103 ~~~~l~~~l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~ 182 (293)
.++... +...+.. ..+.|+||.|= |+-+. . ..=|.=|.++|+...... ....+...+.+-.
T Consensus 106 ~~dR~~-a~~~~~~-~~~~dviilDD-GfQh~-----------~----l~rD~~IvlvD~~~~fgn-g~lLPaGpLREp~ 166 (311)
T TIGR00682 106 SKDRKD-AILLILE-QLDPDVIILDD-GLQHR-----------K----LHRDVEIVVVDGQRPFGN-GFLLPAGPLREFP 166 (311)
T ss_pred eChHHH-HHHHHHh-cCCCCEEEECC-CCcCc-----------c----ccCCeEEEEECCCCCCCC-CcccCCcCCCCCh
Confidence 333332 3333332 34689999883 22211 1 122445888998764321 1111111233446
Q ss_pred HHHhccCEEEEeCCC
Q 022736 183 HQIAFADVVILNKVD 197 (293)
Q Consensus 183 ~qi~~a~iivlNK~D 197 (293)
.++..+|++|+|+.+
T Consensus 167 ~~l~raD~vvv~~~~ 181 (311)
T TIGR00682 167 KRLKSADAVIVNGGE 181 (311)
T ss_pred hhhhhCCEEEEeCCc
Confidence 778899999999985
No 429
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.44 E-value=0.00015 Score=58.49 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=47.8
Q ss_pred ccEEEEEcccchHHHHhhhcccCCch-HHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCC
Q 022736 154 DSIITVVDAKNLLFQIDKYRHLSSYP-EAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQV 232 (293)
Q Consensus 154 d~vi~vvDa~~~~~~~~~~~~~~~~~-~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~ 232 (293)
|.+++|+|+.......... .. ..+.....+.++|+||+|+++.+ ...++...++...
T Consensus 1 Dvvl~VvD~~~p~~~~~~~-----i~~~~~~~~~~p~IiVlNK~Dl~~~~----~~~~~~~~~~~~~------------- 58 (155)
T cd01849 1 DVILEVLDARDPLGTRSPD-----IERVLIKEKGKKLILVLNKADLVPKE----VLRKWLAYLRHSY------------- 58 (155)
T ss_pred CEEEEEEeccCCccccCHH-----HHHHHHhcCCCCEEEEEechhcCCHH----HHHHHHHHHHhhC-------------
Confidence 5789999997543221110 11 12233356899999999997642 1122222222111
Q ss_pred CchhhcccccCCcchhhhhhhhhh
Q 022736 233 DLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 233 ~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
...++.+|+.++.|+++|.+.+.
T Consensus 59 -~~~ii~vSa~~~~gi~~L~~~i~ 81 (155)
T cd01849 59 -PTIPFKISATNGQGIEKKESAFT 81 (155)
T ss_pred -CceEEEEeccCCcChhhHHHHHH
Confidence 13467899999999998888764
No 430
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.43 E-value=0.00042 Score=54.81 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=41.8
Q ss_pred CCEEEEecCCCCCc-HHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCC-chHHHHHHhccCEEEEeCCCC
Q 022736 121 LDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSS-YPEAIHQIAFADVVILNKVDL 198 (293)
Q Consensus 121 ~d~iiidt~G~~~~-~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~-~~~~~~qi~~a~iivlNK~D~ 198 (293)
-++.|-||.|+.+- .++-...+ ...|..++|.+..+......- ..+.. +...-..-+.|.+++-||+|+
T Consensus 60 E~l~lyDTaGlq~~~~eLprhy~--------q~aDafVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr 130 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQQELPRHYF--------QFADAFVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDR 130 (198)
T ss_pred heEEEeecccccCchhhhhHhHh--------ccCceEEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhc
Confidence 35789999997764 33333222 346778888887765432211 00000 001112335578888999999
Q ss_pred CCCCC
Q 022736 199 VSPER 203 (293)
Q Consensus 199 ~~~~~ 203 (293)
.++.+
T Consensus 131 ~~p~~ 135 (198)
T KOG3883|consen 131 AEPRE 135 (198)
T ss_pred ccchh
Confidence 86654
No 431
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00016 Score=63.06 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=36.7
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++++++|+.++.+.....- +++|+|++|||||||++.|..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 68899999999876666654333 689999999999999999985
No 432
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00014 Score=63.79 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=36.1
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++.|+.++.+....+- +++|+|++|||||||++.|..
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 68999999999876666543332 699999999999999999984
No 433
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.00019 Score=60.20 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=39.8
Q ss_pred CCceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 8 PPLAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
....+++.++.+.|++.+.+....+ .|++++||+|+|||||++.|=+
T Consensus 4 ~~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 4 KIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ccceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 4457899999999999999986543 3699999999999999988855
No 434
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.0002 Score=63.53 Aligned_cols=49 Identities=29% Similarity=0.375 Sum_probs=39.9
Q ss_pred CCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++...+++.+++++|+.++.+....+- +++|+|++|||||||++.|..
T Consensus 16 ~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 16 DAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred cccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445678999999999887766654443 599999999999999999985
No 435
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00016 Score=62.70 Aligned_cols=45 Identities=31% Similarity=0.343 Sum_probs=36.7
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
|.+++++++++|++++.+....+- +++|+|++|||||||++.|..
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 458899999999776666654433 699999999999999999985
No 436
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00049 Score=58.84 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=37.6
Q ss_pred ceEEEccccccccCcc----cCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSH----ENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++|+++.|+... .+.+..+- +++|+|.+|||||||.+.|+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 5789999999999888 55555444 489999999999999999983
No 437
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00019 Score=62.57 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=37.0
Q ss_pred CceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 9 PLAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+.+++++++++.|+++..+....+ -+++|+|+.|||||||++.|..
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999887665554333 3699999999999999999995
No 438
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.00015 Score=65.50 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=35.7
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.++++|++++|++...+....+- +++++|++|+|||||++.+..
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 58999999999985444443333 699999999999999999974
No 439
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00015 Score=61.49 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=33.7
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|++++.+....+- +++|+|+.|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3577888888776666554333 699999999999999999985
No 440
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.39 E-value=0.0043 Score=54.65 Aligned_cols=38 Identities=29% Similarity=0.234 Sum_probs=31.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCC
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE 70 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~ 70 (293)
.+|.|.|--|+||||+.-.|... ..|+++.+|-.|++.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~ 42 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKH 42 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCc
Confidence 46777799999999988887653 569999999999864
No 441
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.39 E-value=0.00014 Score=58.53 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=50.0
Q ss_pred ccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCC
Q 022736 152 RLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQ 231 (293)
Q Consensus 152 ~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~ 231 (293)
++|.+++|+|+.......+. ...........+.++|+||+|+.+.. ....+. .+... .
T Consensus 12 ~aD~vl~V~D~~~~~~~~~~-----~l~~~~~~~~~p~iiv~NK~Dl~~~~----~~~~~~-~~~~~-~----------- 69 (156)
T cd01859 12 ESDVVLEVLDARDPELTRSR-----KLERYVLELGKKLLIVLNKADLVPKE----VLEKWK-SIKES-E----------- 69 (156)
T ss_pred hCCEEEEEeeCCCCcccCCH-----HHHHHHHhCCCcEEEEEEhHHhCCHH----HHHHHH-HHHHh-C-----------
Confidence 48999999999753321110 01222233357889999999997532 112211 11110 0
Q ss_pred CCchhhcccccCCcchhhhhhhhhhhh
Q 022736 232 VDLSEVLNCRAYDATHVTRLEGLLEEH 258 (293)
Q Consensus 232 ~~~~~i~~~sa~~~~~~~~l~~~l~~~ 258 (293)
..+++.+|++++.|+++|...+.+.
T Consensus 70 --~~~~~~iSa~~~~gi~~L~~~l~~~ 94 (156)
T cd01859 70 --GIPVVYVSAKERLGTKILRRTIKEL 94 (156)
T ss_pred --CCcEEEEEccccccHHHHHHHHHHH
Confidence 1246889999999999998887653
No 442
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00021 Score=62.76 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=36.8
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
-.+++++++++|++++.+....+- +++|+|++|||||||++.|..
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 358899999999876666654333 599999999999999999984
No 443
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.39 E-value=0.00027 Score=56.12 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=58.4
Q ss_pred CCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHHHhhhcccCCchHHHHHH--hccCEEEEeCCC
Q 022736 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQI--AFADVVILNKVD 197 (293)
Q Consensus 120 ~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi--~~a~iivlNK~D 197 (293)
+.+.-|+||+|......+...+ ....+++++|.|.+.......- .. ...+....+ +.+.+||-||+|
T Consensus 61 ra~L~IWDTAGQErfHALGPIY--------YRgSnGalLVyDITDrdSFqKV-Kn--WV~Elr~mlGnei~l~IVGNKiD 129 (218)
T KOG0088|consen 61 RADLHIWDTAGQERFHALGPIY--------YRGSNGALLVYDITDRDSFQKV-KN--WVLELRTMLGNEIELLIVGNKID 129 (218)
T ss_pred eeeeeeeeccchHhhhccCceE--------EeCCCceEEEEeccchHHHHHH-HH--HHHHHHHHhCCeeEEEEecCccc
Confidence 4678899999964432221111 1346788999998754332210 00 011222222 346788889999
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCEEEEeecCCCCchhhcccccCCcchhhhhhhhh
Q 022736 198 LVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 255 (293)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~~~~~~~i~~~sa~~~~~~~~l~~~l 255 (293)
+-.+..+ ...+..+.-+.. . ...+.+||++..|++++-..+
T Consensus 130 LEeeR~V--t~qeAe~YAesv--G-------------A~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 130 LEEERQV--TRQEAEAYAESV--G-------------ALYMETSAKDNVGISELFESL 170 (218)
T ss_pred HHHhhhh--hHHHHHHHHHhh--c-------------hhheecccccccCHHHHHHHH
Confidence 8654321 122222222211 1 345678999999988776555
No 444
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.00015 Score=61.93 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=34.0
Q ss_pred EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|++++.+....+ -+++|+|+.|||||||++.|..
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 367788888877666654433 3589999999999999999985
No 445
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.38 E-value=0.00016 Score=64.61 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=38.0
Q ss_pred ceEEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
..+.+.++++.|+ .+..+.....- ++++.|+.|||||||++.|+..
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3577899999999 57787765332 7999999999999999999863
No 446
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00022 Score=62.81 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=37.4
Q ss_pred CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+-++++++++++|+++..+....+- +++|+|++|||||||++.|..
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3468999999999876666654433 689999999999999999985
No 447
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.38 E-value=0.0002 Score=61.73 Aligned_cols=43 Identities=33% Similarity=0.488 Sum_probs=34.3
Q ss_pred EEEccccccccCc----ccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|+++ +.+....+- +++|+|+.|||||||++.|..
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 6788999988765 555543332 699999999999999999985
No 448
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.36 E-value=0.00026 Score=60.38 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=40.5
Q ss_pred CceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 9 PLAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++++++++++++..+.+-.. -+.+|+|++|+|||||++.++.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~G 56 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG 56 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhc
Confidence 568999999999999999986543 3689999999999999999985
No 449
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.36 E-value=0.00021 Score=62.63 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=36.4
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
.++++|++++|+.++.+....+ -+++|+|++|||||||++.|..
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 6889999999987666655433 3699999999999999999985
No 450
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=97.35 E-value=0.006 Score=53.08 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=29.1
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCC
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG 69 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g 69 (293)
+.+..+..|+||||+.-.|... ..|+++.++-.|++
T Consensus 4 i~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 4 IVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 3455778999999999888663 46899999999985
No 451
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00022 Score=62.29 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=36.3
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++++++|+++..+....+- +++|+|++|||||||++.|..
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 68899999999877666644322 699999999999999999984
No 452
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.35 E-value=0.00069 Score=49.10 Aligned_cols=30 Identities=43% Similarity=0.638 Sum_probs=22.7
Q ss_pred EEEEEecCCCcHHHHHHHHHcc--CCCCeEEE
Q 022736 34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAV 63 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~--~~~~~vav 63 (293)
++++.|..|+||||+...|... ..|.++.+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~ 32 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLL 32 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4678999999999999999864 23445444
No 453
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00022 Score=63.16 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=38.0
Q ss_pred CCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++-++++.++++.|+++..+....+- +++|+|+.|||||||++.|..
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444579999999999876555544333 699999999999999999984
No 454
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.35 E-value=0.00017 Score=61.48 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=32.5
Q ss_pred EEEccccccccC----cccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|+. +..+....+- +++|+|++|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 357788888865 4455443322 699999999999999999985
No 455
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.35 E-value=0.00022 Score=64.15 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=37.6
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|++...+....+- ++++.|+.|||||||++.|+..
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999877666654333 6999999999999999999864
No 456
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00022 Score=61.27 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=37.5
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++++++|+....+.+...- ++.|+|++|+|||||+|-+..
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 57888999999987777766554 499999999999999999985
No 457
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00016 Score=62.46 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=34.1
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++|+++..+....+- +++|+|+.|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567888888766666554333 6999999999999999999853
No 458
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.34 E-value=0.00019 Score=60.86 Aligned_cols=44 Identities=30% Similarity=0.460 Sum_probs=33.9
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++|+.++.+.....- +++|+|++|||||||++.|...
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3577888888776655543322 6899999999999999999853
No 459
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=97.34 E-value=0.0016 Score=58.45 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=84.1
Q ss_pred CCceeEEEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCc-cccchhh----hhc---CCCCcchhhhhhccCcc
Q 022736 29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEE-IGVERAM----INE---GEGGALVEEWVELANGC 98 (293)
Q Consensus 29 ~~~~pvi~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~-~~~d~~~----~~~---~~~~~~~~~~~~l~~gc 98 (293)
...-|.++++|+..+|||||.+-|++- .+|.+...+..|+|.. +.+.+.+ +.. ..+|.....-...+-|-
T Consensus 100 ~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~ 179 (415)
T KOG2749|consen 100 SSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGL 179 (415)
T ss_pred hccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecccchhheecccccchhhCcccCCceeeeccC
Confidence 345789999999999999999999873 5688999999988752 1112111 100 00011000000011111
Q ss_pred eeeccchh--------HHHHHHHHHhh--cCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccchHHH
Q 022736 99 ICCTVKHS--------LVQALEQLVQR--KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQ 168 (293)
Q Consensus 99 icc~~~~~--------l~~~l~~l~~~--~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~~~~ 168 (293)
-..+..-+ +.+++..-... ..+..-+||||.|+.++..+.. +. + ....++++ ++.|+|.+.....
T Consensus 180 ~sp~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~~egy~~-ll-h--ai~~f~v~-vviVLg~ErLy~~ 254 (415)
T KOG2749|consen 180 TSPSTNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIEGEGYAA-LL-H--AIKAFEVD-VVIVLGQERLYSS 254 (415)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHhccCchhcccceEEeccceeccccHHH-HH-H--HHHHcCcc-EEEEeccHHHHHH
Confidence 11111112 22222221110 1134558999999887544432 22 2 23446776 5667777755544
Q ss_pred HhhhcccCCchHHHHHHhccCEEEEeCCCCCCC
Q 022736 169 IDKYRHLSSYPEAIHQIAFADVVILNKVDLVSP 201 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~ 201 (293)
+.... .--.+-.++.+-|.+.+-+
T Consensus 255 lkk~~---------~~~~~v~vv~lpKsgGv~~ 278 (415)
T KOG2749|consen 255 LKKDL---------PPKKNVRVVKLPKSGGVVA 278 (415)
T ss_pred HHhhc---------cccccceEEEecCCCCeEe
Confidence 43221 1114457899999987654
No 460
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.34 E-value=0.00023 Score=60.95 Aligned_cols=44 Identities=32% Similarity=0.408 Sum_probs=34.0
Q ss_pred EEEccccccccCc----ccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++|+.. +.+.....- +++|+|+.|||||||++.|...
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6788899888764 445443322 6999999999999999999853
No 461
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.33 E-value=0.00024 Score=60.37 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=33.3
Q ss_pred EEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|+ +...+....+- +++|+|+.|||||||++.|..
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 67889998884 44555543332 699999999999999999985
No 462
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.33 E-value=0.00021 Score=56.37 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHcc
Q 022736 34 VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+|++.|+||||||||++.|.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999864
No 463
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00026 Score=62.40 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=36.9
Q ss_pred ceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
..++++|++++|+.++.+....+- +++|+|+.|||||||++.|..
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 368999999999876666654333 599999999999999999985
No 464
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00032 Score=61.28 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=36.3
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
++++.+++++|+++..+....+- +++|+|+.|||||||++.|..
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 68999999999876665544332 699999999999999999985
No 465
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.33 E-value=0.00024 Score=61.50 Aligned_cols=43 Identities=23% Similarity=0.432 Sum_probs=34.4
Q ss_pred EEEcccccccc-CcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|+ +++.+....+- +++|+|+.|||||||++.|..
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 67888888887 55566544333 699999999999999999985
No 466
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00021 Score=61.54 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=36.2
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++|+++.|++.....+...- +++++|++||||||+++-+-+
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999998888876554 488999999999999866543
No 467
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00021 Score=64.95 Aligned_cols=46 Identities=28% Similarity=0.449 Sum_probs=38.5
Q ss_pred CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+..+++++++++|++...+.+..+- ++.+.|++||||||+++.|..
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999987777755433 588999999999999999985
No 468
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.33 E-value=0.00018 Score=65.73 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=38.0
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
++++.|++++|+....+....+- +++++|+.|||||||++.|+..
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 69999999999887777654332 6999999999999999999863
No 469
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.32 E-value=0.0002 Score=60.66 Aligned_cols=43 Identities=33% Similarity=0.448 Sum_probs=34.0
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|+.+..+....+- +++|+|+.|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3577888888776666544333 699999999999999999995
No 470
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.32 E-value=0.00021 Score=61.77 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=35.0
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++|+++..+....+- +++|+|+.|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6788899888876666544332 6999999999999999999853
No 471
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.32 E-value=0.00086 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHcc
Q 022736 33 GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
++++|+|++||||||+++.|++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999875
No 472
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.32 E-value=0.00019 Score=61.56 Aligned_cols=43 Identities=26% Similarity=0.488 Sum_probs=33.6
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|++++.+....+- +++|+|+.|||||||++.|..
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3577888888776665543332 699999999999999999984
No 473
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.32 E-value=0.00025 Score=48.98 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=23.2
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEE
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVI 64 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv 64 (293)
+++++|.+||||||+.+.|.+...+.++.++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 4788999999999999999865322444444
No 474
>PRK01889 GTPase RsgA; Reviewed
Probab=97.32 E-value=0.00024 Score=65.23 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=50.0
Q ss_pred cccccEEEEEcccchHHHHhhhcccCCchHHHHHHhccCEEEEeCCCCCCCCCCcchHHHHHHHHHhhcCCCEEEEeecC
Q 022736 151 VRLDSIITVVDAKNLLFQIDKYRHLSSYPEAIHQIAFADVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRC 230 (293)
Q Consensus 151 ~~~d~vi~vvDa~~~~~~~~~~~~~~~~~~~~~qi~~a~iivlNK~D~~~~~~~~~~~~~~~~~l~~lnp~a~i~~~~~~ 230 (293)
..+|.++.|+++........ +..+.......+.+-+||+||+|+++.. +...+.++.+++..
T Consensus 111 ANvD~vliV~s~~p~~~~~~----ldr~L~~a~~~~i~piIVLNK~DL~~~~------~~~~~~~~~~~~g~-------- 172 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRR----IERYLALAWESGAEPVIVLTKADLCEDA------EEKIAEVEALAPGV-------- 172 (356)
T ss_pred EeCCEEEEEEecCCCCChhH----HHHHHHHHHHcCCCEEEEEEChhcCCCH------HHHHHHHHHhCCCC--------
Confidence 57898999998853222110 0113444455566779999999998642 22234444443332
Q ss_pred CCCchhhcccccCCcchhhhhhhhhh
Q 022736 231 QVDLSEVLNCRAYDATHVTRLEGLLE 256 (293)
Q Consensus 231 ~~~~~~i~~~sa~~~~~~~~l~~~l~ 256 (293)
+++.+|+.++.|++.|..++.
T Consensus 173 -----~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 173 -----PVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -----cEEEEECCCCccHHHHHHHhh
Confidence 356677777777777777764
No 475
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00024 Score=62.75 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=35.5
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++.+++++|+++..+....+- +++|+|+.|||||||++.|..
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 6789999999876666654333 699999999999999999985
No 476
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.31 E-value=0.00019 Score=64.40 Aligned_cols=46 Identities=28% Similarity=0.387 Sum_probs=37.4
Q ss_pred ceEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
|.+++.+++++|++...+....+ -+++|+|+.|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 1 MSIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CEEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999987666665322 26999999999999999999863
No 477
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.0002 Score=62.66 Aligned_cols=44 Identities=25% Similarity=0.424 Sum_probs=34.9
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++|+++..+....+- +++|+|+.|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6788899888776555544332 6999999999999999999863
No 478
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.31 E-value=0.00021 Score=61.52 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=33.8
Q ss_pred EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|++++.+....+ -+++|+|+.|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 357788888877666654332 3699999999999999999985
No 479
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.00019 Score=61.32 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=32.6
Q ss_pred EEEccccccccC----cccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSN----SHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~----~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++|+. ++.+....+ -+++|+|+.|||||||++.|...
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 357788888876 444444322 26999999999999999999853
No 480
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00025 Score=61.76 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=36.0
Q ss_pred eEEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 11 AVRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+++++++++|++++.+....+ -+++|+|+.|||||||++.|...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999887665554332 26999999999999999999853
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.31 E-value=0.00022 Score=59.90 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=27.3
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE 67 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d 67 (293)
+++|+|++|||||||++.|.+...+.++.++..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5889999999999999999875444566676665
No 482
>PF13479 AAA_24: AAA domain
Probab=97.31 E-value=0.00082 Score=57.23 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=49.5
Q ss_pred EEEEEecCCCcHHHHHHHHHccCCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccchhHHHHHHH
Q 022736 34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ 113 (293)
Q Consensus 34 vi~i~G~~gaGKTTlin~ll~~~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~~~l~~~l~~ 113 (293)
-++|.|.+|+|||||+..+ .++.++..|.|. ..+... .. .. .+.+ ..-.++.+++..
T Consensus 5 ~~lIyG~~G~GKTt~a~~~------~k~l~id~E~g~-~~~~~~--~~-~~------~i~i-------~s~~~~~~~~~~ 61 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL------PKPLFIDTENGS-DSLKFL--DD-GD------VIPI-------TSWEDFLEALDE 61 (213)
T ss_pred EEEEECCCCCCHHHHHHhC------CCeEEEEeCCCc-cchhhh--cC-CC------eeCc-------CCHHHHHHHHHH
Confidence 4778999999999999988 567888888884 111100 00 00 0111 134467777766
Q ss_pred HHhhcCCCCEEEEecCCCC
Q 022736 114 LVQRKERLDHILLETTGLA 132 (293)
Q Consensus 114 l~~~~~~~d~iiidt~G~~ 132 (293)
+.....+++.|+||+....
T Consensus 62 l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 62 LEEDEADYDTIVIDSISWL 80 (213)
T ss_pred HHhccCCCCEEEEECHHHH
Confidence 6555678999999998743
No 483
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.31 E-value=0.00022 Score=60.01 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=35.2
Q ss_pred EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|++++.+....+ .+++|+|+.|||||||++.|..
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 678899988887666665433 3699999999999999999985
No 484
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.31 E-value=0.0056 Score=52.79 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=59.2
Q ss_pred EEEEecCCCcHHHHHHHHHcc--CCCCeEEEEEcCCCCccccchhhhhcCCCCcchhhhhhccCcceeeccc--hhHHHH
Q 022736 35 TVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK--HSLVQA 110 (293)
Q Consensus 35 i~i~G~~gaGKTTlin~ll~~--~~~~~vavv~~d~g~~~~~d~~~~~~~~~~~~~~~~~~l~~gcicc~~~--~~l~~~ 110 (293)
.+...--|+||||+.-.|... ..|++++++..|++.. ... ....... .. .....|.-.... ..+...
T Consensus 5 ~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s--~~~-w~~~~~~----~~--~~~~~~~~~~~~~~~~l~~~ 75 (231)
T PRK13849 5 TFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP--LTR-WKENALR----SN--TWDPACEVYAADELPLLEAA 75 (231)
T ss_pred EEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC--HHH-HHHhhcc----cc--CCCccceecCCCHHHHHHHH
Confidence 344567799999999888653 5689999999999752 111 1111000 00 001111111110 112222
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHhhhcchhhccccccccEEEEEcccch
Q 022736 111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 165 (293)
Q Consensus 111 l~~l~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~~~~~~~~~d~vi~vvDa~~~ 165 (293)
+..+. .+.+|++||||||..... .. ......|.||..+.++.+
T Consensus 76 l~~~~--~~~yD~iiID~pp~~~~~--~~--------~al~~aD~vliP~~ps~~ 118 (231)
T PRK13849 76 YEDAE--LQGFDYALADTHGGSSEL--NN--------TIIASSNLLLIPTMLTPL 118 (231)
T ss_pred HHHHh--hCCCCEEEEeCCCCccHH--HH--------HHHHHCCEEEEeccCcHH
Confidence 33221 256999999999965422 11 122456778888877654
No 485
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.31 E-value=0.00023 Score=60.08 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=35.1
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++.+++++|+.++.+....+- +++|+|+.|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6788888888776666554333 6999999999999999999853
No 486
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.30 E-value=0.00028 Score=61.44 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=36.3
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++++++|+++..+.....- +++|+|++|||||||++.|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 48899999999876666654333 589999999999999999985
No 487
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.30 E-value=0.00029 Score=60.48 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=34.5
Q ss_pred eEEEccccccccCc----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNS----HENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++++++|++. ..+....+ -+++|+|+.|||||||++.|..
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 47899999998752 24444332 3799999999999999999985
No 488
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.30 E-value=0.0003 Score=61.23 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=36.7
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.++++++++.|+++..+.....- +++|+|+.|||||||++.|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 67899999999876666654433 699999999999999999984
No 489
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.30 E-value=0.00031 Score=67.75 Aligned_cols=54 Identities=22% Similarity=0.293 Sum_probs=40.1
Q ss_pred CCCCCCCCceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 2 EDEEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
.+.+-..+-.+++++++++|+++..+....+- +++|+|+.|||||||++.|...
T Consensus 2 ~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 2 QTSDTTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred CCCcCCCCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33343333368999999999876666544332 5999999999999999999863
No 490
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.30 E-value=0.00026 Score=60.25 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=33.6
Q ss_pred EEEccccccccCc----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNS----HENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|+.. +.+..... -+++|+|+.|||||||++.|..
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 6788899888765 44554322 2589999999999999999985
No 491
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00027 Score=61.70 Aligned_cols=44 Identities=36% Similarity=0.538 Sum_probs=36.5
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.++++|++++|++++.+....+- +++|+|++|||||||++.|..
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999876666654433 699999999999999999985
No 492
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00019 Score=60.80 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=32.7
Q ss_pred EEEccccccccCcccCCCCce-----eEEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSV-----GVTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|++++.+....+ -+++|+|+.|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 356788888876555544322 2689999999999999999995
No 493
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.29 E-value=0.00027 Score=60.31 Aligned_cols=43 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred EEEccccccccCc----ccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~----~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++++.|... +.+.....- +++|+|++|||||||+|-+-.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567777766554 334433222 599999999999999999974
No 494
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00027 Score=61.60 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=35.9
Q ss_pred eEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
++++++++++|+++..+....+- +++|+|+.|||||||++.|..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 57899999999876666544332 699999999999999999974
No 495
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00027 Score=62.70 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=35.3
Q ss_pred ceEEEccccccccCc-----ccCCCCce-----eEEEEEecCCCcHHHHHHHHHcc
Q 022736 10 LAVRIDETTHEFSNS-----HENDDVSV-----GVTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 10 ~~~~~~~~~~~~~~~-----~~~~~~~~-----pvi~i~G~~gaGKTTlin~ll~~ 55 (293)
|.+++++++++|+.. +.+....+ -+++|+|+.|||||||++.|...
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 668899999998752 34443322 26899999999999999999853
No 496
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.29 E-value=0.00033 Score=61.22 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=35.7
Q ss_pred CceEEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
|..+++++++++| ..+.+.....- +++|+|++|||||||++.|..
T Consensus 2 ~~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 2 PQQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred CcEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999988 44555544332 699999999999999999985
No 497
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.29 E-value=0.00025 Score=61.69 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=35.0
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHcc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG 55 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~~ 55 (293)
+++++++++|+....+....+- +++|+|++|||||||++.|...
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6788999888776656554333 6999999999999999999853
No 498
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.28 E-value=0.00025 Score=47.71 Aligned_cols=21 Identities=57% Similarity=0.707 Sum_probs=19.4
Q ss_pred eEEEEEecCCCcHHHHHHHHH
Q 022736 33 GVTVITGFLGAGKSTLVNYIL 53 (293)
Q Consensus 33 pvi~i~G~~gaGKTTlin~ll 53 (293)
++++|+|+.||||||++.++.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999986
No 499
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.00027 Score=60.93 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=33.8
Q ss_pred eEEEccccccccCc----ccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 11 ~~~~~~~~~~~~~~----~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
.+++++++++|+.. +.+....+- +++|+|+.|||||||++.|..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 38899999988642 344433222 689999999999999999985
No 500
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.28 E-value=0.00021 Score=61.92 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=33.6
Q ss_pred EEEccccccccCcccCCCCcee-----EEEEEecCCCcHHHHHHHHHc
Q 022736 12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN 54 (293)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~p-----vi~i~G~~gaGKTTlin~ll~ 54 (293)
+++++++++|++++.+.....- +++|+|+.|||||||++.|..
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3577888888766655543322 699999999999999999985
Done!